diff options
1071 files changed, 32096 insertions, 14477 deletions
diff --git a/.github/CODEOWNERS b/.github/CODEOWNERS index 8adb04ecbf5a0..a2c1c228746d1 100644 --- a/.github/CODEOWNERS +++ b/.github/CODEOWNERS @@ -67,6 +67,9 @@ /nixos/lib/make-disk-image.nix @raitobezarius # Nix, the package manager +# @raitobezarius is not "code owner", but is listed here to be notified of changes +# pertaining to the Nix package manager. +# i.e. no authority over those files. pkgs/tools/package-management/nix/ @raitobezarius nixos/modules/installer/tools/nix-fallback-paths.nix @raitobezarius @@ -152,6 +155,7 @@ nixos/modules/installer/tools/nix-fallback-paths.nix @raitobezarius # C compilers /pkgs/development/compilers/gcc +/pkgs/development/compilers/llvm @RossComputerGuy /pkgs/development/compilers/emscripten @raitobezarius /doc/languages-frameworks/emscripten.section.md @raitobezarius @@ -363,3 +367,16 @@ pkgs/by-name/lx/lxc* @adamcstephens pkgs/by-name/lx/lxd* @adamcstephens pkgs/os-specific/linux/lxc/ @adamcstephens +# ExpidusOS, Flutter +/pkgs/development/compilers/flutter @RossComputerGuy +/pkgs/desktops/expidus @RossComputerGuy + +# GNU Tar & Zip +/pkgs/tools/archivers/gnutar @RossComputerGuy +/pkgs/tools/archivers/zip @RossComputerGuy + +# SELinux +/pkgs/os-specific/linux/checkpolicy @RossComputerGuy +/pkgs/os-specific/linux/libselinux @RossComputerGuy +/pkgs/os-specific/linux/libsepol @RossComputerGuy + diff --git a/doc/build-helpers/special/makesetuphook.section.md b/doc/build-helpers/special/makesetuphook.section.md index e83164b7eb701..179d8d456372c 100644 --- a/doc/build-helpers/special/makesetuphook.section.md +++ b/doc/build-helpers/special/makesetuphook.section.md @@ -9,22 +9,40 @@ pkgs.makeSetupHook { name = "something-hook"; propagatedBuildInputs = [ pkgs.commandsomething ]; depsTargetTargetPropagated = [ pkgs.libsomething ]; -} ./script.sh +} ./script.sh; ``` ### setup hook that depends on the hello package and runs hello and @shell@ is substituted with path to bash {#sec-pkgs.makeSetupHook-usage-example} ```nix -pkgs.makeSetupHook { +pkgs.makeSetupHook + { name = "run-hello-hook"; - propagatedBuildInputs = [ pkgs.hello ]; - substitutions = { shell = "${pkgs.bash}/bin/bash"; }; - passthru.tests.greeting = callPackage ./test { }; - meta.platforms = lib.platforms.linux; -} (writeScript "run-hello-hook.sh" '' - #!@shell@ - hello -'') + # Put dependencies here if they have hooks or necessary dependencies propagated + # otherwise prefer direct paths to executables. + propagatedBuildInputs = [ + pkgs.hello + pkgs.cowsay + ]; + substitutions = { + shell = "${pkgs.bash}/bin/bash"; + cowsay = "${pkgs.cowsay}/bin/cowsay"; + }; + } + ( + writeScript "run-hello-hook.sh" '' + #!@shell@ + # the direct path to the executable has to be here because + # this will be run when the file is sourced + # at which point '$PATH' has not yet been populated with inputs + @cowsay@ cow + + _printHelloHook() { + hello + } + preConfigureHooks+=(_printHelloHook) + '' + ); ``` ## Attributes {#sec-pkgs.makeSetupHook-attributes} diff --git a/doc/languages-frameworks/dart.section.md b/doc/languages-frameworks/dart.section.md index 594ef7391cbb1..1b065ff4cde71 100644 --- a/doc/languages-frameworks/dart.section.md +++ b/doc/languages-frameworks/dart.section.md @@ -101,7 +101,7 @@ See the [Dart documentation](#ssec-dart-applications) for more details on requir `flutter` in Nixpkgs always points to `flutterPackages.stable`, which is the latest packaged version. To avoid unforeseen breakage during upgrade, packages in Nixpkgs should use a specific flutter version, such as `flutter319` and `flutter322`, instead of using `flutter` directly. ```nix -{ flutter, fetchFromGitHub }: +{ flutter322, fetchFromGitHub }: flutter322.buildFlutterApplication { pname = "firmware-updater"; diff --git a/doc/languages-frameworks/ocaml.section.md b/doc/languages-frameworks/ocaml.section.md index 44f514e90a1b9..46fddcb3b9dee 100644 --- a/doc/languages-frameworks/ocaml.section.md +++ b/doc/languages-frameworks/ocaml.section.md @@ -120,14 +120,6 @@ buildDunePackage rec { } ``` -Note about `minimalOCamlVersion`. A deprecated version of this argument was -spelled `minimumOCamlVersion`; setting the old attribute wrongly modifies the -derivation hash and is therefore inappropriate. As a technical dept, currently -packaged libraries may still use the old spelling: maintainers are invited to -fix this when updating packages. Massive renaming is strongly discouraged as it -would be challenging to review, difficult to test, and will cause unnecessary -rebuild. - The build will automatically fail if two distinct versions of the same library are added to `buildInputs` (which usually happens transitively because of `propagatedBuildInputs`). Set `dontDetectOcamlConflicts` to true to disable this diff --git a/lib/attrsets.nix b/lib/attrsets.nix index 83f8d0f34186e..c0ac6eeb41bcf 100644 --- a/lib/attrsets.nix +++ b/lib/attrsets.nix @@ -11,7 +11,7 @@ let in rec { - inherit (builtins) attrNames listToAttrs hasAttr isAttrs getAttr removeAttrs; + inherit (builtins) attrNames listToAttrs hasAttr isAttrs getAttr removeAttrs intersectAttrs; /** diff --git a/lib/default.nix b/lib/default.nix index d5d47defb8e64..9c6f886c9ee46 100644 --- a/lib/default.nix +++ b/lib/default.nix @@ -64,22 +64,21 @@ let # linux kernel configuration kernel = callLibs ./kernel.nix; - inherit (builtins) add addErrorContext attrNames concatLists - deepSeq elem elemAt filter genericClosure genList getAttr - hasAttr head isAttrs isBool isInt isList isPath isString length - lessThan listToAttrs pathExists readFile replaceStrings seq - stringLength sub substring tail trace; + # TODO: For consistency, all builtins should also be available from a sub-library; + # these are the only ones that are currently not + inherit (builtins) addErrorContext isPath trace; inherit (self.trivial) id const pipe concat or and xor bitAnd bitOr bitXor bitNot boolToString mergeAttrs flip mapNullable inNixShell isFloat min max importJSON importTOML warn warnIf warnIfNot throwIf throwIfNot checkListOfEnum info showWarnings nixpkgsVersion version isInOldestRelease - mod compare splitByAndCompare + mod compare splitByAndCompare seq deepSeq lessThan add sub functionArgs setFunctionArgs isFunction toFunction mirrorFunctionArgs - toHexString toBaseDigits inPureEvalMode; + toHexString toBaseDigits inPureEvalMode isBool isInt pathExists + genericClosure readFile; inherit (self.fixedPoints) fix fix' converge extends composeExtensions composeManyExtensions makeExtensible makeExtensibleWithCustomName; inherit (self.attrsets) attrByPath hasAttrByPath setAttrByPath - getAttrFromPath attrVals attrValues getAttrs catAttrs filterAttrs + getAttrFromPath attrVals attrNames attrValues getAttrs catAttrs filterAttrs filterAttrsRecursive foldlAttrs foldAttrs collect nameValuePair mapAttrs mapAttrs' mapAttrsToList attrsToList concatMapAttrs mapAttrsRecursive mapAttrsRecursiveCond genAttrs isDerivation toDerivation optionalAttrs @@ -87,14 +86,16 @@ let recursiveUpdate matchAttrs mergeAttrsList overrideExisting showAttrPath getOutput getBin getLib getDev getMan chooseDevOutputs zipWithNames zip recurseIntoAttrs dontRecurseIntoAttrs cartesianProduct cartesianProductOfSets - mapCartesianProduct updateManyAttrsByPath; - inherit (self.lists) singleton forEach foldr fold foldl foldl' imap0 imap1 - ifilter0 concatMap flatten remove findSingle findFirst any all count + mapCartesianProduct updateManyAttrsByPath listToAttrs hasAttr getAttr isAttrs intersectAttrs removeAttrs; + inherit (self.lists) singleton forEach map foldr fold foldl foldl' imap0 imap1 + filter ifilter0 concatMap flatten remove findSingle findFirst any all count optional optionals toList range replicate partition zipListsWith zipLists reverseList listDfs toposort sort sortOn naturalSort compareLists take drop sublist last init crossLists unique allUnique intersectLists - subtractLists mutuallyExclusive groupBy groupBy'; + subtractLists mutuallyExclusive groupBy groupBy' concatLists genList + length head tail elem elemAt isList; inherit (self.strings) concatStrings concatMapStrings concatImapStrings + stringLength substring isString replaceStrings intersperse concatStringsSep concatMapStringsSep concatImapStringsSep concatLines makeSearchPath makeSearchPathOutput makeLibraryPath makeIncludePath makeBinPath optionalString @@ -105,7 +106,7 @@ let escapeRegex escapeURL escapeXML replaceChars lowerChars upperChars toLower toUpper addContextFrom splitString removePrefix removeSuffix versionOlder versionAtLeast - getName getVersion + getName getVersion match split cmakeOptionType cmakeBool cmakeFeature mesonOption mesonBool mesonEnable nameFromURL enableFeature enableFeatureAs withFeature diff --git a/lib/licenses.nix b/lib/licenses.nix index 8dbdf27fa845a..a608d3ec3f543 100644 --- a/lib/licenses.nix +++ b/lib/licenses.nix @@ -362,6 +362,12 @@ in mkLicense lset) ({ fullName = "Creative Commons Attribution Share Alike 4.0"; }; + cc-sa-10 = { + shortName = "CC-SA-1.0"; + fullName = "Creative Commons Share Alike 1.0"; + url = "https://creativecommons.org/licenses/sa/1.0"; + }; + cddl = { spdxId = "CDDL-1.0"; fullName = "Common Development and Distribution License 1.0"; @@ -524,6 +530,13 @@ in mkLicense lset) ({ fullName = "Unspecified free software license"; }; + fsl11Mit = { + fullName = "Functional Source License, Version 1.1, MIT Future License"; + url = "https://fsl.software/FSL-1.1-MIT.template.md"; + free = false; + redistributable = true; + }; + ftl = { spdxId = "FTL"; fullName = "Freetype Project License"; @@ -1272,11 +1285,21 @@ in mkLicense lset) ({ fullName = "xinetd License"; }; + xskat = { + spdxId = "XSkat"; + fullName = "XSkat License"; + }; + zlib = { spdxId = "Zlib"; fullName = "zlib License"; }; + zsh = { + url = "https://github.com/zsh-users/zsh/blob/master/LICENCE"; + fulllName = "Zsh License"; + }; + zpl20 = { spdxId = "ZPL-2.0"; fullName = "Zope Public License 2.0"; @@ -1287,10 +1310,6 @@ in mkLicense lset) ({ fullName = "Zope Public License 2.1"; }; - xskat = { - spdxId = "XSkat"; - fullName = "XSkat License"; - }; } // { # TODO: remove legacy aliases apsl10 = { diff --git a/maintainers/maintainer-list.nix b/maintainers/maintainer-list.nix index 434758515514e..0621e8bce12a9 100644 --- a/maintainers/maintainer-list.nix +++ b/maintainers/maintainer-list.nix @@ -1551,12 +1551,6 @@ githubId = 56009; name = "Arcadio Rubio GarcÃa"; }; - arcayr = { - email = "nix@arcayr.online"; - github = "arcayr"; - githubId = 11192354; - name = "Elliot Speck"; - }; archer-65 = { email = "mario.liguori.056@gmail.com"; github = "archer-65"; @@ -1983,6 +1977,12 @@ githubId = 12958979; name = "Mika Naylor"; }; + autra = { + email = "augustin.trancart@gmail.com"; + github = "autra"; + githubId = 1576598; + name = "Augustin Trancart"; + }; autrimpo = { email = "michal@koutensky.net"; github = "autrimpo"; @@ -3962,6 +3962,12 @@ githubId = 40290417; name = "Seb Blair"; }; + CompileTime = { + email = "socialcoms@posteo.de"; + github = "Compile-Time"; + githubId = 18414241; + name = "Andreas Erdes"; + }; confus = { email = "con-f-use@gmx.net"; github = "con-f-use"; @@ -4260,6 +4266,12 @@ github = "d4ilyrun"; githubId = 34611103; }; + d4rkstar = { + name = "Bruno Salzano"; + email = "d4rkstar@gmail.com"; + github = "d4rkstar"; + githubId = 4957015; + }; dadada = { name = "dadada"; email = "dadada@dadada.li"; @@ -6500,6 +6512,18 @@ githubId = 8182846; name = "Francesco Gazzetta"; }; + fidgetingbits = { + name = "fidgetingbits"; + email = "nixpkgs.xe7au@passmail.net"; + matrix = "@fidgetingbits:matrix.org"; + github = "fidgetingbits"; + githubId = 13679876; + keys = [ + { fingerprint = "U+vNNrQxJRj3NPu9EoD0LFZssRbk6LBg4YPN5nFvQvs"; } + { fingerprint = "lX5ewVcaQLxuzqI92gujs3jFNki4d8qF+PATexMijoQ"; } + { fingerprint = "elY15tXap1tddxbBVoUoAioe1u0RDWti5rc9cauSmwo"; } + ]; + }; figsoda = { email = "figsoda@pm.me"; matrix = "@figsoda:matrix.org"; @@ -6806,6 +6830,14 @@ matrix = "@frogamic:beeper.com"; keys = [ { fingerprint = "779A 7CA8 D51C C53A 9C51 43F7 AAE0 70F0 67EC 00A5"; } ]; }; + frontear = { + name = "Ali Rizvi"; + email = "perm-iterate-0b@icloud.com"; + matrix = "@frontear:matrix.org"; + github = "Frontear"; + githubId = 31909298; + keys = [ { fingerprint = "C170 11B7 C0AA BB3F 7415 022C BCB5 CEFD E222 82F5"; } ]; + }; frontsideair = { email = "photonia@gmail.com"; github = "frontsideair"; @@ -7367,12 +7399,6 @@ github = "gmacon"; githubId = 238853; }; - gmemstr = { - email = "git@gmem.ca"; - github = "gmemstr"; - githubId = 1878840; - name = "Gabriel Simmer"; - }; gnxlxnxx = { email = "gnxlxnxx@web.de"; github = "gnxlxnxx"; @@ -8393,6 +8419,12 @@ githubId = 7403236; name = "Markus J. Ankenbrand"; }; + iivusly = { + email = "iivusly@icloud.com"; + github = "iivusly"; + githubId = 52052910; + name = "iivusly"; + }; ikervagyok = { email = "ikervagyok@gmail.com"; github = "ikervagyok"; @@ -10568,13 +10600,6 @@ name = "Kat Inskip"; keys = [ { fingerprint = "9CC6 44B5 69CD A59B C874 C4C9 E8DD E3ED 1C90 F3A0"; } ]; }; - kiwi = { - email = "envy1988@gmail.com"; - github = "Kiwi"; - githubId = 35715; - name = "Robert Djubek"; - keys = [ { fingerprint = "8992 44FC D291 5CA2 0A97 802C 156C 88A5 B0A0 4B2A"; } ]; - }; kjeremy = { email = "kjeremy@gmail.com"; name = "Jeremy Kolb"; @@ -11291,12 +11316,6 @@ github = "LogicalOverflow"; githubId = 5919957; }; - lheckemann = { - email = "git@sphalerite.org"; - github = "lheckemann"; - githubId = 341954; - name = "Linus Heckemann"; - }; lhvwb = { email = "nathaniel.baxter@gmail.com"; github = "nathanielbaxter"; @@ -13131,6 +13150,12 @@ githubId = 3269878; name = "Miguel Madrid MencÃa"; }; + mimvoid = { + github = "mimvoid"; + githubId = 153698678; + email = "mimvoid@proton.me"; + name = "mimvoid"; + }; mindavi = { email = "rol3517@gmail.com"; github = "Mindavi"; @@ -13407,14 +13432,6 @@ githubId = 754512; name = "Mogria"; }; - mohe2015 = { - name = "Moritz Hedtke"; - email = "Moritz.Hedtke@t-online.de"; - matrix = "@moritz.hedtke:matrix.org"; - github = "mohe2015"; - githubId = 13287984; - keys = [ { fingerprint = "1248 D3E1 1D11 4A85 75C9 8934 6794 D45A 488C 2EDE"; } ]; - }; momeemt = { name = "Mutsuha Asada"; email = "me@momee.mt"; @@ -13629,6 +13646,12 @@ githubId = 3856390; email = "mschwaig+nixpkgs@eml.cc"; }; + msciabarra = { + email = "msciabarra@apache.org"; + github = "sciabarracom"; + githubId = 30654959; + name = "Michele Sciabarra"; + }; msiedlarek = { email = "mikolaj@siedlarek.pl"; github = "msiedlarek"; @@ -15392,6 +15415,12 @@ githubId = 920910; name = "peelz"; }; + peigongdsd = { + email = "peigong2013@outlook.com"; + github = "peigongdsd"; + githubId = 51317171; + name = "Peilin Lee"; + }; pelme = { email = "andreas@pelme.se"; github = "pelme"; @@ -15780,6 +15809,12 @@ githubId = 4303706; keys = [ { fingerprint = "B00F E582 FD3F 0732 EA48 3937 F558 14E4 D687 4375"; } ]; }; + pladypus = { + name = "Peter Loftus"; + email = "loftusp5976+nixpkgs@gmail.com"; + github = "pladypus"; + githubId = 56337621; + }; plchldr = { email = "mail@oddco.de"; github = "plchldr"; @@ -17670,13 +17705,6 @@ githubId = 226872; name = "Samuel Ainsworth"; }; - samueldr = { - email = "samuel@dionne-riel.com"; - matrix = "@samueldr:matrix.org"; - github = "samueldr"; - githubId = 132835; - name = "Samuel Dionne-Riel"; - }; samuelefacenda = { name = "Samuele Facenda"; email = "samuele.facenda@gmail.com"; @@ -18780,14 +18808,6 @@ githubId = 53029739; name = "Joshua Ortiz"; }; - Sorixelle = { - email = "ruby+nixpkgs@srxl.me"; - matrix = "@ruby:isincredibly.gay"; - name = "Ruby Iris Juric"; - github = "Sorixelle"; - githubId = 38685302; - keys = [ { fingerprint = "2D76 76C7 A28E 16FC 75C7 268D 1B55 6ED8 4B0E 303A"; } ]; - }; sorki = { email = "srk@48.io"; github = "sorki"; @@ -20007,12 +20027,6 @@ githubId = 1391883; name = "Tom Hall"; }; - thubrecht = { - email = "tom@hubrecht.ovh"; - github = "Tom-Hubrecht"; - githubId = 26650391; - name = "Tom Hubrecht"; - }; Thunderbottom = { email = "chinmaydpai@gmail.com"; github = "Thunderbottom"; @@ -21543,12 +21557,6 @@ githubId = 11740700; name = "Andrei Pampu"; }; - wolfangaukang = { - email = "clone.gleeful135+nixpkgs@anonaddy.me"; - github = "WolfangAukang"; - githubId = 8378365; - name = "P. R. d. O."; - }; wolfgangwalther = { name = "Wolfgang Walther"; email = "walther@technowledgy.de"; diff --git a/maintainers/scripts/pluginupdate.py b/maintainers/scripts/pluginupdate.py index 8ae86e2e93a49..ce4f55ae1e3cd 100644 --- a/maintainers/scripts/pluginupdate.py +++ b/maintainers/scripts/pluginupdate.py @@ -788,7 +788,10 @@ def update_plugins(editor: Editor, args): fetch_config = FetchConfig(args.proc, args.github_token) update = editor.get_update(args.input_file, args.outfile, fetch_config) + start_time = time.time() redirects = update() + duration = time.time() - start_time + print(f"The plugin update took {duration}s.") editor.rewrite_input(fetch_config, args.input_file, editor.deprecated, redirects) autocommit = not args.no_commit diff --git a/maintainers/team-list.nix b/maintainers/team-list.nix index 26ed7fd6ef510..51b5f575487ac 100644 --- a/maintainers/team-list.nix +++ b/maintainers/team-list.nix @@ -677,12 +677,6 @@ with lib.maintainers; shortName = "Mercury Employees"; }; - mobile = { - members = [ samueldr ]; - scope = "Maintain Mobile NixOS."; - shortName = "Mobile"; - }; - nix = { members = [ eelco diff --git a/nixos/doc/manual/configuration/gpu-accel.chapter.md b/nixos/doc/manual/configuration/gpu-accel.chapter.md index 3b98bdd97c681..8afa2807b7b60 100644 --- a/nixos/doc/manual/configuration/gpu-accel.chapter.md +++ b/nixos/doc/manual/configuration/gpu-accel.chapter.md @@ -30,7 +30,7 @@ $ export \ ``` The second mechanism is to add the OpenCL driver package to -[](#opt-hardware.opengl.extraPackages). +[](#opt-hardware.graphics.extraPackages). This links the ICD file under `/run/opengl-driver`, where it will be visible to the ICD loader. @@ -51,12 +51,12 @@ Platform Vendor Advanced Micro Devices, Inc. Modern AMD [Graphics Core Next](https://en.wikipedia.org/wiki/Graphics_Core_Next) (GCN) GPUs are supported through the rocmPackages.clr.icd package. Adding this package to -[](#opt-hardware.opengl.extraPackages) +[](#opt-hardware.graphics.extraPackages) enables OpenCL support: ```nix { - hardware.opengl.extraPackages = [ + hardware.graphics.extraPackages = [ rocmPackages.clr.icd ]; } @@ -71,13 +71,13 @@ intel-compute-runtime package. The proprietary Intel OpenCL runtime, in the intel-ocl package, is an alternative for Gen7 GPUs. The intel-compute-runtime or intel-ocl package can be added to -[](#opt-hardware.opengl.extraPackages) +[](#opt-hardware.graphics.extraPackages) to enable OpenCL support. For example, for Gen8 and later GPUs, the following configuration can be used: ```nix { - hardware.opengl.extraPackages = [ + hardware.graphics.extraPackages = [ intel-compute-runtime ]; } @@ -90,8 +90,8 @@ compute API for GPUs. It is used directly by games or indirectly though compatibility layers like [DXVK](https://github.com/doitsujin/dxvk/wiki). -By default, if [](#opt-hardware.opengl.driSupport) -is enabled, mesa is installed and provides Vulkan for supported hardware. +By default, if [](#opt-hardware.graphics.enable) +is enabled, Mesa is installed and provides Vulkan for supported hardware. Similar to OpenCL, Vulkan drivers are loaded through the *Installable Client Driver* (ICD) mechanism. ICD files for Vulkan are JSON files that @@ -110,7 +110,7 @@ $ export \ ``` The second mechanism is to add the Vulkan driver package to -[](#opt-hardware.opengl.extraPackages). +[](#opt-hardware.graphics.extraPackages). This links the ICD file under `/run/opengl-driver`, where it will be visible to the ICD loader. @@ -140,18 +140,18 @@ Modern AMD [Graphics Core Next](https://en.wikipedia.org/wiki/Graphics_Core_Next) (GCN) GPUs are supported through either radv, which is part of mesa, or the amdvlk package. Adding the amdvlk package to -[](#opt-hardware.opengl.extraPackages) +[](#opt-hardware.graphics.extraPackages) makes amdvlk the default driver and hides radv and lavapipe from the device list. A specific driver can be forced as follows: ```nix { - hardware.opengl.extraPackages = [ + hardware.graphics.extraPackages = [ pkgs.amdvlk ]; # To enable Vulkan support for 32-bit applications, also add: - hardware.opengl.extraPackages32 = [ + hardware.graphics.extraPackages32 = [ pkgs.driversi686Linux.amdvlk ]; @@ -171,7 +171,7 @@ graphics hardware acceleration capabilities for video processing. VA-API drivers are loaded by `libva`. The version in nixpkgs is built to search the opengl driver path, so drivers can be installed in -[](#opt-hardware.opengl.extraPackages). +[](#opt-hardware.graphics.extraPackages). VA-API can be tested using: @@ -185,7 +185,7 @@ Modern Intel GPUs use the iHD driver, which can be installed with: ```nix { - hardware.opengl.extraPackages = [ + hardware.graphics.extraPackages = [ intel-media-driver ]; } @@ -195,7 +195,7 @@ Older Intel GPUs use the i965 driver, which can be installed with: ```nix { - hardware.opengl.extraPackages = [ + hardware.graphics.extraPackages = [ intel-vaapi-driver ]; } diff --git a/nixos/doc/manual/configuration/x-windows.chapter.md b/nixos/doc/manual/configuration/x-windows.chapter.md index 31752330dd9a8..362ae5d7e5df1 100644 --- a/nixos/doc/manual/configuration/x-windows.chapter.md +++ b/nixos/doc/manual/configuration/x-windows.chapter.md @@ -79,7 +79,7 @@ Wine, you should also set the following: ```nix { - hardware.opengl.driSupport32Bit = true; + hardware.graphics.enable32Bit = true; } ``` @@ -183,23 +183,6 @@ If you have an older card, you may have to use one of the legacy drivers: You may need to reboot after enabling this driver to prevent a clash with other kernel modules. -## Proprietary AMD drivers {#sec-x11--graphics-cards-amd} - -AMD provides a proprietary driver for its graphics cards that is not -enabled by default because it's not Free Software, is often broken in -nixpkgs and as of this writing doesn't offer more features or -performance. If you still want to use it anyway, you need to explicitly -set: - -```nix -{ - services.xserver.videoDrivers = [ "amdgpu-pro" ]; -} -``` - -You will need to reboot after enabling this driver to prevent a clash -with other kernel modules. - ## Touchpads {#sec-x11-touchpads} Support for Synaptics touchpads (found in many laptops such as the Dell diff --git a/nixos/doc/manual/release-notes/rl-2205.section.md b/nixos/doc/manual/release-notes/rl-2205.section.md index 3a2c70fb7a31b..dad45f12373e6 100644 --- a/nixos/doc/manual/release-notes/rl-2205.section.md +++ b/nixos/doc/manual/release-notes/rl-2205.section.md @@ -453,7 +453,7 @@ In addition to numerous new and upgraded packages, this release has the followin The new names are as follows: - `bindAddress`: [`services.keycloak.settings.http-host`](#opt-services.keycloak.settings.http-host) - - `forceBackendUrlToFrontendUrl`: [`services.keycloak.settings.hostname-strict-backchannel`](#opt-services.keycloak.settings.hostname-strict-backchannel) + - `forceBackendUrlToFrontendUrl`: `services.keycloak.settings.hostname-strict-backchannel` - `httpPort`: [`services.keycloak.settings.http-port`](#opt-services.keycloak.settings.http-port) - `httpsPort`: [`services.keycloak.settings.https-port`](#opt-services.keycloak.settings.https-port) diff --git a/nixos/doc/manual/release-notes/rl-2405.section.md b/nixos/doc/manual/release-notes/rl-2405.section.md index 165e3e13a78ef..b1b18b35e9c28 100644 --- a/nixos/doc/manual/release-notes/rl-2405.section.md +++ b/nixos/doc/manual/release-notes/rl-2405.section.md @@ -62,7 +62,7 @@ In addition to numerous new and upgraded packages, this release has the followin <!-- Please keep entries alphabetically sorted. --> - [Anki Sync Server](https://docs.ankiweb.net/sync-server.html), the official sync server built into recent versions of Anki. Available as [services.anki-sync-server](#opt-services.anki-sync-server.enable). -The pre-existing [services.ankisyncd](#opt-services.ankisyncd.enable) has been marked deprecated and will be dropped after 24.05 due to lack of maintenance of the anki-sync-server software. +The pre-existing [services.ankisyncd](#opt-services.ankisyncd.enable) has been marked deprecated and will be dropped after 24.05 due to lack of maintenance of the ankisyncd software. - [ALVR](https://github.com/alvr-org/alvr), a VR desktop streamer. Available as [programs.alvr](#opt-programs.alvr.enable). @@ -207,6 +207,8 @@ The pre-existing [services.ankisyncd](#opt-services.ankisyncd.enable) has been m - [xdg-terminal-exec](https://github.com/Vladimir-csp/xdg-terminal-exec), the proposed Default Terminal Execution Specification. +- Convenience options for `amdgpu`, open source driver for Radeon cards, is now available under `hardware.amdgpu`. + - [ydotool](https://github.com/ReimuNotMoe/ydotool), a generic command-line automation tool now has a module. Available as [programs.ydotool](#opt-programs.ydotool.enable). - [your_spotify](https://github.com/Yooooomi/your_spotify), a self hosted Spotify tracking dashboard. Available as [services.your_spotify](#opt-services.your_spotify.enable) @@ -822,3 +824,4 @@ Module System: ### Internal {#sec-release-24.05-lib-internal} - `lib` now has [Readme for contributing](https://github.com/NixOS/nixpkgs/tree/master/lib#readme). - Some function's documentation is now written using the [accepted doc comment syntax](https://github.com/NixOS/rfcs/pull/145). +- `odoo` has been updated from `16.0.20231024` to `17.0.20240507`. diff --git a/nixos/doc/manual/release-notes/rl-2411.section.md b/nixos/doc/manual/release-notes/rl-2411.section.md index ab02e6888f8d8..2de4cf4d08af2 100644 --- a/nixos/doc/manual/release-notes/rl-2411.section.md +++ b/nixos/doc/manual/release-notes/rl-2411.section.md @@ -4,6 +4,8 @@ ## Highlights {#sec-release-24.11-highlights} +- Convenience options for `amdgpu`, open source driver for Radeon cards, is now available under `hardware.amdgpu`. + - [AMDVLK](https://github.com/GPUOpen-Drivers/AMDVLK), AMD's open source Vulkan driver, is now available to be configured as `hardware.amdgpu.amdvlk` option. This also allows configuring runtime settings of AMDVLK and enabling experimental features. @@ -23,11 +25,25 @@ - `androidenv.androidPkgs_9_0` has been removed, and replaced with `androidenv.androidPkgs` for a more complete Android SDK including support for Android 9 and later. +- `wstunnel` has had a major version upgrade that entailed rewriting the program in Rust. + The module was updated to accommodate for breaking changes. + Breaking changes to the module API were minimised as much as possible, + but some were nonetheless inevitable due to changes in the upstream CLI. + Certain options were moved from separate CLI arguments into the forward specifications, + and those options were also removed from the module's API, + please consult the wstunnel man page for more detail. + Also be aware that if you have set additional options in `services.wstunnel.{clients,servers}.<name>.extraArgs`, + that those might have been removed or modified upstream. + - `nginx` package no longer includes `gd` and `geoip` dependencies. For enabling it, override `nginx` package with the optionals `withImageFilter` and `withGeoIP`. - `openssh` and `openssh_hpn` are now compiled without Kerberos 5 / GSSAPI support in an effort to reduce the attack surface of the components for the majority of users. Users needing this support can use the new `opensshWithKerberos` and `openssh_hpnWithKerberos` flavors (e.g. `programs.ssh.package = pkgs.openssh_gssapi`). +- `security.ipa.ipaHostname` now defaults to the value of `networking.fqdn` if + it is set, instead of the previous hardcoded default of + `${networking.hostName}.${security.ipa.domain}`. + - `nvimpager` was updated to version 0.13.0, which changes the order of user and nvimpager settings: user commands in `-c` and `--cmd` now override the respective default settings because they are executed later. @@ -75,6 +91,9 @@ services.portunus.ldap.package = pkgs.openldap.override { libxcrypt = pkgs.libxcrypt-legacy; }; ``` +- `keycloak` was updated to version 25, which introduces new hostname related options. + See [Upgrading Guide](https://www.keycloak.org/docs/25.0.1/upgrading/#migrating-to-25-0-0) for instructions. + - The `tracy` package no longer works on X11, since it's moved to Wayland support, which is the intended default behavior by Tracy maintainers. X11 users have to switch to the new package `tracy-x11`. diff --git a/nixos/modules/config/swap.nix b/nixos/modules/config/swap.nix index a606ebd767598..53aea5d847129 100644 --- a/nixos/modules/config/swap.nix +++ b/nixos/modules/config/swap.nix @@ -275,7 +275,6 @@ in chattr +C "$DEVICE" 2>/dev/null || true dd if=/dev/zero of="$DEVICE" bs=1M count=${toString sw.size} - chmod 0600 ${sw.device} ${optionalString (!sw.randomEncryption.enable) "mkswap ${sw.realDevice}"} fi ''} @@ -292,9 +291,12 @@ in unitConfig.RequiresMountsFor = [ "${dirOf sw.device}" ]; unitConfig.DefaultDependencies = false; # needed to prevent a cycle - serviceConfig.Type = "oneshot"; - serviceConfig.RemainAfterExit = sw.randomEncryption.enable; - serviceConfig.ExecStop = optionalString sw.randomEncryption.enable "${pkgs.cryptsetup}/bin/cryptsetup luksClose ${sw.deviceName}"; + serviceConfig = { + Type = "oneshot"; + RemainAfterExit = sw.randomEncryption.enable; + UMask = "0177"; + ExecStop = optionalString sw.randomEncryption.enable "${pkgs.cryptsetup}/bin/cryptsetup luksClose ${sw.deviceName}"; + }; restartIfChanged = false; }; diff --git a/nixos/modules/hardware/graphics.nix b/nixos/modules/hardware/graphics.nix new file mode 100644 index 0000000000000..99c122f75c2a1 --- /dev/null +++ b/nixos/modules/hardware/graphics.nix @@ -0,0 +1,126 @@ +{ config, lib, pkgs, ... }: +let + cfg = config.hardware.graphics; + + driversEnv = pkgs.buildEnv { + name = "graphics-drivers"; + paths = [ cfg.package ] ++ cfg.extraPackages; + }; + + driversEnv32 = pkgs.buildEnv { + name = "graphics-drivers-32bit"; + paths = [ cfg.package32 ] ++ cfg.extraPackages32; + }; +in +{ + imports = [ + (lib.mkRenamedOptionModule [ "services" "xserver" "vaapiDrivers" ] [ "hardware" "opengl" "extraPackages" ]) + (lib.mkRemovedOptionModule [ "hardware" "opengl" "s3tcSupport" ] "S3TC support is now always enabled in Mesa.") + (lib.mkRemovedOptionModule [ "hardware" "opengl" "driSupport"] "The setting can be removed.") + + (lib.mkRenamedOptionModule [ "hardware" "opengl" "enable"] [ "hardware" "graphics" "enable" ]) + (lib.mkRenamedOptionModule [ "hardware" "opengl" "driSupport32Bit"] [ "hardware" "graphics" "enable32Bit" ]) + (lib.mkRenamedOptionModule [ "hardware" "opengl" "package"] [ "hardware" "graphics" "package" ]) + (lib.mkRenamedOptionModule [ "hardware" "opengl" "package32"] [ "hardware" "graphics" "package32" ]) + (lib.mkRenamedOptionModule [ "hardware" "opengl" "extraPackages"] [ "hardware" "graphics" "extraPackages" ]) + (lib.mkRenamedOptionModule [ "hardware" "opengl" "extraPackages32"] [ "hardware" "graphics" "extraPackages32" ]) + ]; + + options.hardware.graphics = { + enable = lib.mkOption { + description = '' + Whether to enable hardware accelerated graphics drivers. + + This is required to allow most graphical applications and + environments to use hardware rendering, video encode/decode + acceleration, etc. + + This option should be enabled by default by the corresponding modules, + so you do not usually have to set it yourself. + ''; + type = lib.types.bool; + default = false; + }; + + enable32Bit = lib.mkOption { + description = '' + On 64-bit systems, whether to also install 32-bit drivers for + 32-bit applications (such as Wine). + ''; + type = lib.types.bool; + default = false; + }; + + package = lib.mkOption { + description = '' + The package that provides the default driver set. + ''; + type = lib.types.package; + internal = true; + }; + + package32 = lib.mkOption { + description = '' + The package that provides the 32-bit driver set. Used when {option}`enable32Bit` is enabled. + set. + ''; + type = lib.types.package; + internal = true; + }; + + extraPackages = lib.mkOption { + description = '' + Additional packages to add to the default graphics driver lookup path. + This can be used to add OpenCL drivers, VA-API/VDPAU drivers, etc. + + ::: {.note} + intel-media-driver supports hardware Broadwell (2014) or newer. Older hardware should use the mostly unmaintained intel-vaapi-driver driver. + ::: + ''; + type = lib.types.listOf lib.types.package; + default = []; + example = lib.literalExpression "with pkgs; [ intel-media-driver intel-ocl intel-vaapi-driver ]"; + }; + + extraPackages32 = lib.mkOption { + description = '' + Additional packages to add to 32-bit graphics driver lookup path on 64-bit systems. + Used when {option}`enable32Bit` is set. This can be used to add OpenCL drivers, VA-API/VDPAU drivers, etc. + + ::: {.note} + intel-media-driver supports hardware Broadwell (2014) or newer. Older hardware should use the mostly unmaintained intel-vaapi-driver driver. + ::: + ''; + type = lib.types.listOf lib.types.package; + default = []; + example = lib.literalExpression "with pkgs.pkgsi686Linux; [ intel-media-driver intel-vaapi-driver ]"; + }; + }; + + config = lib.mkIf cfg.enable { + assertions = [ + { + assertion = cfg.enable32Bit -> pkgs.stdenv.isx86_64; + message = "`hardware.graphics.enable32Bit` only makes sense on a 64-bit system."; + } + { + assertion = cfg.enable32Bit -> (config.boot.kernelPackages.kernel.features.ia32Emulation or false); + message = "`hardware.graphics.enable32Bit` requires a kernel that supports 32-bit emulation"; + } + ]; + + systemd.tmpfiles.settings.graphics-driver = { + "/run/opengl-driver"."L+".argument = toString driversEnv; + "/run/opengl-driver-32" = + if pkgs.stdenv.isi686 then + { "L+".argument = "opengl-driver"; } + else if cfg.enable32Bit then + { "L+".argument = toString driversEnv32; } + else + { "r" = {}; }; + }; + + hardware.graphics.package = lib.mkDefault pkgs.mesa.drivers; + hardware.graphics.package32 = lib.mkDefault pkgs.pkgsi686Linux.mesa.drivers; + }; +} diff --git a/nixos/modules/hardware/opengl.nix b/nixos/modules/hardware/opengl.nix deleted file mode 100644 index 3ca9deec8961d..0000000000000 --- a/nixos/modules/hardware/opengl.nix +++ /dev/null @@ -1,158 +0,0 @@ -{ config, lib, pkgs, ... }: - -let - - cfg = config.hardware.opengl; - - kernelPackages = config.boot.kernelPackages; - - videoDrivers = config.services.xserver.videoDrivers; - - package = pkgs.buildEnv { - name = "opengl-drivers"; - paths = [ cfg.package ] ++ cfg.extraPackages; - }; - - package32 = pkgs.buildEnv { - name = "opengl-drivers-32bit"; - paths = [ cfg.package32 ] ++ cfg.extraPackages32; - }; - -in - -{ - - imports = [ - (lib.mkRenamedOptionModule [ "services" "xserver" "vaapiDrivers" ] [ "hardware" "opengl" "extraPackages" ]) - (lib.mkRemovedOptionModule [ "hardware" "opengl" "s3tcSupport" ] "S3TC support is now always enabled in Mesa.") - ]; - - options = { - - hardware.opengl = { - enable = lib.mkOption { - description = '' - Whether to enable OpenGL drivers. This is needed to enable - OpenGL support in X11 systems, as well as for Wayland compositors - like sway and Weston. It is enabled by default - by the corresponding modules, so you do not usually have to - set it yourself, only if there is no module for your wayland - compositor of choice. See services.xserver.enable and - programs.sway.enable. - ''; - type = lib.types.bool; - default = false; - }; - - driSupport = lib.mkOption { - type = lib.types.bool; - default = true; - description = '' - Whether to enable accelerated OpenGL rendering through the - Direct Rendering Interface (DRI). - ''; - }; - - driSupport32Bit = lib.mkOption { - type = lib.types.bool; - default = false; - description = '' - On 64-bit systems, whether to support Direct Rendering for - 32-bit applications (such as Wine). This is currently only - supported for the `nvidia` as well as - `Mesa`. - ''; - }; - - package = lib.mkOption { - type = lib.types.package; - internal = true; - description = '' - The package that provides the OpenGL implementation. - ''; - }; - - package32 = lib.mkOption { - type = lib.types.package; - internal = true; - description = '' - The package that provides the 32-bit OpenGL implementation on - 64-bit systems. Used when {option}`driSupport32Bit` is - set. - ''; - }; - - extraPackages = lib.mkOption { - type = lib.types.listOf lib.types.package; - default = []; - example = lib.literalExpression "with pkgs; [ intel-media-driver intel-ocl intel-vaapi-driver ]"; - description = '' - Additional packages to add to OpenGL drivers. - This can be used to add OpenCL drivers, VA-API/VDPAU drivers etc. - - ::: {.note} - intel-media-driver supports hardware Broadwell (2014) or newer. Older hardware should use the mostly unmaintained intel-vaapi-driver driver. - ::: - ''; - }; - - extraPackages32 =lib. mkOption { - type = lib.types.listOf lib.types.package; - default = []; - example = lib.literalExpression "with pkgs.pkgsi686Linux; [ intel-media-driver intel-vaapi-driver ]"; - description = '' - Additional packages to add to 32-bit OpenGL drivers on 64-bit systems. - Used when {option}`driSupport32Bit` is set. This can be used to add OpenCL drivers, VA-API/VDPAU drivers etc. - - ::: {.note} - intel-media-driver supports hardware Broadwell (2014) or newer. Older hardware should use the mostly unmaintained intel-vaapi-driver driver. - ::: - ''; - }; - - setLdLibraryPath = lib.mkOption { - type = lib.types.bool; - internal = true; - default = false; - description = '' - Whether the `LD_LIBRARY_PATH` environment variable - should be set to the locations of driver libraries. Drivers which - rely on overriding libraries should set this to true. Drivers which - support `libglvnd` and other dispatch libraries - instead of overriding libraries should not set this. - ''; - }; - }; - - }; - - config = lib.mkIf cfg.enable { - assertions = [ - { assertion = cfg.driSupport32Bit -> pkgs.stdenv.isx86_64; - message = "Option driSupport32Bit only makes sense on a 64-bit system."; - } - { assertion = cfg.driSupport32Bit -> (config.boot.kernelPackages.kernel.features.ia32Emulation or false); - message = "Option driSupport32Bit requires a kernel that supports 32bit emulation"; - } - ]; - - systemd.tmpfiles.settings.opengl = { - "/run/opengl-driver"."L+".argument = toString package; - "/run/opengl-driver-32" = - if pkgs.stdenv.isi686 then - { "L+".argument = "opengl-driver"; } - else if cfg.driSupport32Bit then - { "L+".argument = toString package32; } - else - { "r" = {}; }; - }; - - environment.sessionVariables.LD_LIBRARY_PATH = lib.mkIf cfg.setLdLibraryPath - ([ "/run/opengl-driver/lib" ] ++ lib.optional cfg.driSupport32Bit "/run/opengl-driver-32/lib"); - - hardware.opengl.package = lib.mkDefault pkgs.mesa.drivers; - hardware.opengl.package32 = lib.mkDefault pkgs.pkgsi686Linux.mesa.drivers; - - boot.extraModulePackages = lib.optional (lib.elem "virtualbox" videoDrivers) kernelPackages.virtualboxGuestAdditions; - }; -} diff --git a/nixos/modules/hardware/video/amdgpu-pro.nix b/nixos/modules/hardware/video/amdgpu-pro.nix deleted file mode 100644 index 2a86280eec8cb..0000000000000 --- a/nixos/modules/hardware/video/amdgpu-pro.nix +++ /dev/null @@ -1,69 +0,0 @@ -# This module provides the proprietary AMDGPU-PRO drivers. - -{ config, lib, pkgs, ... }: - -with lib; - -let - - drivers = config.services.xserver.videoDrivers; - - enabled = elem "amdgpu-pro" drivers; - - package = config.boot.kernelPackages.amdgpu-pro; - package32 = pkgs.pkgsi686Linux.linuxPackages.amdgpu-pro.override { kernel = null; }; - - opengl = config.hardware.opengl; - -in - -{ - - config = mkIf enabled { - services.xserver.drivers = singleton - { name = "amdgpu"; modules = [ package ]; display = true; }; - - hardware.opengl.package = package; - hardware.opengl.package32 = package32; - hardware.opengl.setLdLibraryPath = true; - - boot.extraModulePackages = [ package.kmod ]; - - boot.kernelPackages = pkgs.linuxKernel.packagesFor - (pkgs.linuxKernel.kernels.linux_5_10.override { - structuredExtraConfig = { - DEVICE_PRIVATE = kernel.yes; - KALLSYMS_ALL = kernel.yes; - }; - }); - - hardware.firmware = [ package.fw ]; - - systemd.tmpfiles.settings.amdgpu-pro = { - "/run/amdgpu"."L+".argument = "${package}/opt/amdgpu"; - "/run/amdgpu-pro"."L+".argument = "${package}/opt/amdgpu-pro"; - }; - - system.requiredKernelConfig = with config.lib.kernelConfig; [ - (isYes "DEVICE_PRIVATE") - (isYes "KALLSYMS_ALL") - ]; - - boot.initrd.extraUdevRulesCommands = mkIf (!config.boot.initrd.systemd.enable) '' - cp -v ${package}/etc/udev/rules.d/*.rules $out/ - ''; - boot.initrd.services.udev.packages = [ package ]; - - environment.systemPackages = - [ package.vulkan ] ++ - # this isn't really DRI, but we'll reuse this option for now - optional config.hardware.opengl.driSupport32Bit package32.vulkan; - - environment.etc = { - "modprobe.d/blacklist-radeon.conf".source = package + "/etc/modprobe.d/blacklist-radeon.conf"; - amd.source = package + "/etc/amd"; - }; - - }; - -} diff --git a/nixos/modules/hardware/video/nvidia.nix b/nixos/modules/hardware/video/nvidia.nix index ae5c2aa7a034a..0274dfcaa70f9 100644 --- a/nixos/modules/hardware/video/nvidia.nix +++ b/nixos/modules/hardware/video/nvidia.nix @@ -297,7 +297,7 @@ in KERNEL=="nvidia_uvm", RUN+="${pkgs.runtimeShell} -c 'mknod -m 666 /dev/nvidia-uvm c $$(grep nvidia-uvm /proc/devices | cut -d \ -f 1) 0'" KERNEL=="nvidia_uvm", RUN+="${pkgs.runtimeShell} -c 'mknod -m 666 /dev/nvidia-uvm-tools c $$(grep nvidia-uvm /proc/devices | cut -d \ -f 1) 1'" ''; - hardware.opengl = { + hardware.graphics = { extraPackages = [ nvidia_x11.out ]; extraPackages32 = [ nvidia_x11.lib32 ]; }; @@ -467,7 +467,7 @@ in "egl/egl_external_platform.d".source = "/run/opengl-driver/share/egl/egl_external_platform.d/"; }; - hardware.opengl = { + hardware.graphics = { extraPackages = [ pkgs.nvidia-vaapi-driver ]; extraPackages32 = [ pkgs.pkgsi686Linux.nvidia-vaapi-driver ]; }; diff --git a/nixos/modules/hardware/video/virtualbox.nix b/nixos/modules/hardware/video/virtualbox.nix new file mode 100644 index 0000000000000..31ed92b7d148e --- /dev/null +++ b/nixos/modules/hardware/video/virtualbox.nix @@ -0,0 +1,7 @@ +{ lib, config, ... }: +let + inherit (config.boot) kernelPackages; + inherit (config.services.xserver) videoDrivers; +in { + boot.extraModulePackages = lib.mkIf (lib.elem "virtualbox" videoDrivers) [ kernelPackages.virtualboxGuestAdditions ]; +} diff --git a/nixos/modules/module-list.nix b/nixos/modules/module-list.nix index a008c3c5bdeae..d412e414f68b5 100644 --- a/nixos/modules/module-list.nix +++ b/nixos/modules/module-list.nix @@ -67,6 +67,7 @@ ./hardware/gkraken.nix ./hardware/glasgow.nix ./hardware/gpgsmartcards.nix + ./hardware/graphics.nix ./hardware/hackrf.nix ./hardware/i2c.nix ./hardware/infiniband.nix @@ -84,7 +85,6 @@ ./hardware/new-lg4ff.nix ./hardware/nitrokey.nix ./hardware/onlykey/default.nix - ./hardware/opengl.nix ./hardware/openrazer.nix ./hardware/opentabletdriver.nix ./hardware/pcmcia.nix @@ -103,7 +103,6 @@ ./hardware/uni-sync.nix ./hardware/usb-modeswitch.nix ./hardware/usb-storage.nix - ./hardware/video/amdgpu-pro.nix ./hardware/video/bumblebee.nix ./hardware/video/capture/mwprocapture.nix ./hardware/video/displaylink.nix @@ -111,6 +110,7 @@ ./hardware/video/nvidia.nix ./hardware/video/switcheroo-control.nix ./hardware/video/uvcvideo/default.nix + ./hardware/video/virtualbox.nix ./hardware/video/webcam/facetimehd.nix ./hardware/video/webcam/ipu6.nix ./hardware/wooting.nix @@ -549,6 +549,7 @@ ./services/games/xonotic.nix ./services/hardware/acpid.nix ./services/hardware/actkbd.nix + ./services/hardware/amdgpu.nix ./services/hardware/amdvlk.nix ./services/hardware/argonone.nix ./services/hardware/asusd.nix diff --git a/nixos/modules/programs/miriway.nix b/nixos/modules/programs/miriway.nix index 00c1356ab0836..418bb3dc4f2dd 100644 --- a/nixos/modules/programs/miriway.nix +++ b/nixos/modules/programs/miriway.nix @@ -65,7 +65,7 @@ in { }; }; - hardware.opengl.enable = lib.mkDefault true; + hardware.graphics.enable = lib.mkDefault true; fonts.enableDefaultPackages = lib.mkDefault true; programs.dconf.enable = lib.mkDefault true; programs.xwayland.enable = lib.mkDefault true; diff --git a/nixos/modules/programs/steam.nix b/nixos/modules/programs/steam.nix index 5138588dbd3e5..2ee464dc22d37 100644 --- a/nixos/modules/programs/steam.nix +++ b/nixos/modules/programs/steam.nix @@ -50,7 +50,7 @@ in { }) // (prev.extraEnv or {}); extraLibraries = pkgs: let prevLibs = if prev ? extraLibraries then prev.extraLibraries pkgs else [ ]; - additionalLibs = with config.hardware.opengl; + additionalLibs = with config.hardware.graphics; if pkgs.stdenv.hostPlatform.is64bit then [ package ] ++ extraPackages else [ package32 ] ++ extraPackages32; @@ -176,10 +176,9 @@ in { }; config = lib.mkIf cfg.enable { - hardware.opengl = { # this fixes the "glXChooseVisual failed" bug, context: https://github.com/NixOS/nixpkgs/issues/47932 + hardware.graphics = { # this fixes the "glXChooseVisual failed" bug, context: https://github.com/NixOS/nixpkgs/issues/47932 enable = true; - driSupport = true; - driSupport32Bit = true; + enable32Bit = true; }; security.wrappers = lib.mkIf (cfg.gamescopeSession.enable && gamescopeCfg.capSysNice) { diff --git a/nixos/modules/programs/turbovnc.nix b/nixos/modules/programs/turbovnc.nix index c28b7f7d79910..c7ab18a2e2886 100644 --- a/nixos/modules/programs/turbovnc.nix +++ b/nixos/modules/programs/turbovnc.nix @@ -17,7 +17,7 @@ in Whether to set up NixOS such that TurboVNC's built-in software OpenGL implementation works. - This will enable {option}`hardware.opengl.enable` so that OpenGL + This will enable {option}`hardware.graphics.enable` so that OpenGL programs can find Mesa's llvmpipe drivers. Setting this option to `false` does not mean that software @@ -46,7 +46,7 @@ in # can find the llvmpipe `swrast.so` software rendering DRI lib via `libglvnd`. # This comment exists to explain why `hardware.` is involved, # even though 100% software rendering is used. - hardware.opengl.enable = true; + hardware.graphics.enable = true; }; } diff --git a/nixos/modules/programs/wayland/wayland-session.nix b/nixos/modules/programs/wayland/wayland-session.nix index 877b106684700..09fb2a5f14b2e 100644 --- a/nixos/modules/programs/wayland/wayland-session.nix +++ b/nixos/modules/programs/wayland/wayland-session.nix @@ -11,7 +11,7 @@ pam.services.swaylock = {}; }; - hardware.opengl.enable = lib.mkDefault true; + hardware.graphics.enable = lib.mkDefault true; fonts.enableDefaultPackages = lib.mkDefault true; programs = { diff --git a/nixos/modules/programs/xonsh.nix b/nixos/modules/programs/xonsh.nix index eed5152ba69a5..6bf18d4ebd89c 100644 --- a/nixos/modules/programs/xonsh.nix +++ b/nixos/modules/programs/xonsh.nix @@ -23,7 +23,7 @@ in }; package = lib.mkPackageOption pkgs "xonsh" { - example = "xonsh.override { extraPackages = ps: [ ps.requests ]; }"; + example = "xonsh.wrapper.override { extraPackages = ps: [ ps.requests ]; }"; }; config = lib.mkOption { @@ -61,17 +61,14 @@ in aliases['ls'] = _ls_alias del _ls_alias - ${cfg.config} ''; environment.systemPackages = [ cfg.package ]; - environment.shells = - [ "/run/current-system/sw/bin/xonsh" - "${cfg.package}/bin/xonsh" - ]; - + environment.shells = [ + "/run/current-system/sw/bin/xonsh" + "${lib.getExe cfg.package}" + ]; }; - } diff --git a/nixos/modules/security/ipa.nix b/nixos/modules/security/ipa.nix index 543b1abfa672c..e746ca75724a1 100644 --- a/nixos/modules/security/ipa.nix +++ b/nixos/modules/security/ipa.nix @@ -85,6 +85,18 @@ in { description = "Whether to cache credentials."; }; + ipaHostname = mkOption { + type = types.str; + example = "myworkstation.example.com"; + default = if config.networking.domain != null then config.networking.fqdn + else "${config.networking.hostName}.${cfg.domain}"; + defaultText = literalExpression '' + if config.networking.domain != null then config.networking.fqdn + else "''${networking.hostName}.''${security.ipa.domain}" + ''; + description = "Fully-qualified hostname used to identify this host in the IPA domain."; + }; + ifpAllowedUids = mkOption { type = types.listOf types.str; default = ["root"]; @@ -218,7 +230,7 @@ in { ipa_domain = ${cfg.domain} ipa_server = _srv_, ${cfg.server} - ipa_hostname = ${config.networking.hostName}.${cfg.domain} + ipa_hostname = ${cfg.ipaHostname} cache_credentials = ${pyBool cfg.cacheCredentials} krb5_store_password_if_offline = ${pyBool cfg.offlinePasswords} @@ -232,7 +244,6 @@ in { ldap_user_extra_attrs = mail:mail, sn:sn, givenname:givenname, telephoneNumber:telephoneNumber, lock:nsaccountlock [sssd] - debug_level = 65510 services = nss, sudo, pam, ssh, ifp domains = ${cfg.domain} @@ -244,7 +255,6 @@ in { pam_verbosity = 3 [sudo] - debug_level = 65510 [autofs] diff --git a/nixos/modules/services/admin/docuum.nix b/nixos/modules/services/admin/docuum.nix index 6f6cd4e027337..51a21740b276a 100644 --- a/nixos/modules/services/admin/docuum.nix +++ b/nixos/modules/services/admin/docuum.nix @@ -2,7 +2,7 @@ let cfg = config.services.docuum; - inherit (lib) mkIf mkEnableOption mkOption getExe types; + inherit (lib) mkIf mkEnableOption mkOption getExe types optionals concatMap; in { options.services.docuum = { @@ -14,6 +14,27 @@ in default = "10 GB"; example = "50%"; }; + + minAge = mkOption { + description = "Sets the minimum age of images to be considered for deletion."; + type = types.nullOr types.str; + default = null; + example = "1d"; + }; + + keep = mkOption { + description = "Prevents deletion of images for which repository:tag matches the specified regex."; + type = types.listOf types.str; + default = []; + example = [ "^my-image" ]; + }; + + deletionChunkSize = mkOption { + description = "Removes specified quantity of images at a time."; + type = types.int; + default = 1; + example = 10; + }; }; config = mkIf cfg.enable { @@ -35,10 +56,13 @@ in DynamicUser = true; StateDirectory = "docuum"; SupplementaryGroups = [ "docker" ]; - ExecStart = utils.escapeSystemdExecArgs [ + ExecStart = utils.escapeSystemdExecArgs ([ (getExe pkgs.docuum) "--threshold" cfg.threshold - ]; + "--deletion-chunk-size" cfg.deletionChunkSize + ] ++ (concatMap (keep: [ "--keep" keep ]) cfg.keep) + ++ (optionals (cfg.minAge != null) [ "--min-age" cfg.minAge ]) + ); }; }; }; diff --git a/nixos/modules/services/admin/meshcentral.nix b/nixos/modules/services/admin/meshcentral.nix index 25779e01123ec..6e0801e1c0894 100644 --- a/nixos/modules/services/admin/meshcentral.nix +++ b/nixos/modules/services/admin/meshcentral.nix @@ -42,5 +42,5 @@ in with lib; { }; }; }; - meta.maintainers = [ maintainers.lheckemann ]; + meta.maintainers = [ ]; } diff --git a/nixos/modules/services/desktop-managers/lomiri.nix b/nixos/modules/services/desktop-managers/lomiri.nix index eec33597dc711..0b871aa38183e 100644 --- a/nixos/modules/services/desktop-managers/lomiri.nix +++ b/nixos/modules/services/desktop-managers/lomiri.nix @@ -63,7 +63,7 @@ in { ]; # Copy-pasted basic stuff - hardware.opengl.enable = lib.mkDefault true; + hardware.graphics.enable = lib.mkDefault true; fonts.enableDefaultPackages = lib.mkDefault true; programs.dconf.enable = lib.mkDefault true; diff --git a/nixos/modules/services/desktops/gnome/gnome-keyring.nix b/nixos/modules/services/desktops/gnome/gnome-keyring.nix index 79bce0ade2fc5..02b198fd81cb9 100644 --- a/nixos/modules/services/desktops/gnome/gnome-keyring.nix +++ b/nixos/modules/services/desktops/gnome/gnome-keyring.nix @@ -1,45 +1,52 @@ # GNOME Keyring daemon. -{ config, pkgs, lib, ... }: - +{ + config, + pkgs, + lib, + ... +}: +let + cfg = config.services.gnome.gnome-keyring; +in { meta = { maintainers = lib.teams.gnome.members; }; - ###### interface - options = { - services.gnome.gnome-keyring = { - - enable = lib.mkOption { - type = lib.types.bool; - default = false; - description = '' - Whether to enable GNOME Keyring daemon, a service designed to - take care of the user's security credentials, - such as user names and passwords. - ''; - }; - + enable = lib.mkEnableOption '' + GNOME Keyring daemon, a service designed to + take care of the user's security credentials, + such as user names and passwords + ''; }; - }; - - ###### implementation - - config = lib.mkIf config.services.gnome.gnome-keyring.enable { - + config = lib.mkIf cfg.enable { environment.systemPackages = [ pkgs.gnome.gnome-keyring ]; - services.dbus.packages = [ pkgs.gnome.gnome-keyring pkgs.gcr ]; + services.dbus.packages = [ + pkgs.gnome.gnome-keyring + pkgs.gcr + ]; xdg.portal.extraPortals = [ pkgs.gnome.gnome-keyring ]; - security.pam.services.login.enableGnomeKeyring = true; + security.pam.services = lib.mkMerge [ + { + login.enableGnomeKeyring = true; + } + (lib.mkIf config.services.xserver.displayManager.gdm.enable { + gdm-password.enableGnomeKeyring = true; + gdm-autologin.enableGnomeKeyring = true; + }) + (lib.mkIf (config.services.xserver.displayManager.gdm.enable && config.services.fprintd.enable) { + gdm-fingerprint.enableGnomeKeyring = true; + }) + ]; security.wrappers.gnome-keyring-daemon = { owner = "root"; @@ -47,7 +54,5 @@ capabilities = "cap_ipc_lock=ep"; source = "${pkgs.gnome.gnome-keyring}/bin/gnome-keyring-daemon"; }; - }; - } diff --git a/nixos/modules/services/display-managers/default.nix b/nixos/modules/services/display-managers/default.nix index feba4b163ccd2..9a7bd6c84b15b 100644 --- a/nixos/modules/services/display-managers/default.nix +++ b/nixos/modules/services/display-managers/default.nix @@ -212,9 +212,7 @@ in after = [ "acpid.service" "systemd-logind.service" "systemd-user-sessions.service" ]; restartIfChanged = false; - environment = lib.optionalAttrs config.hardware.opengl.setLdLibraryPath { - LD_LIBRARY_PATH = lib.makeLibraryPath [ pkgs.addOpenGLRunpath.driverLink ]; - } // cfg.environment; + environment = cfg.environment; preStart = cfg.preStart; script = lib.mkIf (config.systemd.services.display-manager.enable == true) cfg.execCmd; diff --git a/nixos/modules/services/hardware/amdgpu.nix b/nixos/modules/services/hardware/amdgpu.nix new file mode 100644 index 0000000000000..1952be08a17cf --- /dev/null +++ b/nixos/modules/services/hardware/amdgpu.nix @@ -0,0 +1,43 @@ +{ config, lib, pkgs, ... }: + +let + cfg = config.hardware.amdgpu; +in { + options.hardware.amdgpu = { + legacySupport.enable = lib.mkEnableOption '' + using `amdgpu` kernel driver instead of `radeon` for Southern Islands + (Radeon HD 7000) series and Sea Islands (Radeon HD 8000) + series cards. Note: this removes support for analog video outputs, + which is only available in the `radeon` driver + ''; + initrd.enable = lib.mkEnableOption '' + loading `amdgpu` kernelModule in stage 1. + Can fix lower resolution in boot screen during initramfs phase + ''; + opencl.enable = lib.mkEnableOption ''OpenCL support using ROCM runtime library''; + # cfg.amdvlk option is defined in ./amdvlk.nix module + }; + + config = { + boot.kernelParams = lib.optionals cfg.legacySupport.enable [ + "amdgpu.si_support=1" + "amdgpu.cik_support=1" + "radeon.si_support=0" + "radeon.cik_support=0" + ]; + + boot.initrd.kernelModules = lib.optionals cfg.initrd.enable [ "amdgpu" ]; + + hardware.graphics = lib.mkIf cfg.opencl.enable { + enable = lib.mkDefault true; + extraPackages = [ + pkgs.rocmPackages.clr + pkgs.rocmPackages.clr.icd + ]; + }; + }; + + meta = { + maintainers = with lib.maintainers; [ johnrtitor ]; + }; +} diff --git a/nixos/modules/services/hardware/amdvlk.nix b/nixos/modules/services/hardware/amdvlk.nix index 20879f2f21b43..32d6fb3be21dc 100644 --- a/nixos/modules/services/hardware/amdvlk.nix +++ b/nixos/modules/services/hardware/amdvlk.nix @@ -31,11 +31,9 @@ in { }; config = lib.mkIf cfg.enable { - hardware.opengl = { + hardware.graphics = { enable = true; - driSupport = true; extraPackages = [ cfg.package ]; - driSupport32Bit = cfg.support32Bit.enable; extraPackages32 = [ cfg.support32Bit.package ]; }; diff --git a/nixos/modules/services/mail/mailman.nix b/nixos/modules/services/mail/mailman.nix index 180c9800d7345..ab10206fea42e 100644 --- a/nixos/modules/services/mail/mailman.nix +++ b/nixos/modules/services/mail/mailman.nix @@ -646,7 +646,7 @@ in { }; meta = { - maintainers = with lib.maintainers; [ lheckemann qyliss ]; + maintainers = with lib.maintainers; [ qyliss ]; doc = ./mailman.md; }; diff --git a/nixos/modules/services/matrix/synapse.nix b/nixos/modules/services/matrix/synapse.nix index bc88fb53012b7..6d2e6201d66d3 100644 --- a/nixos/modules/services/matrix/synapse.nix +++ b/nixos/modules/services/matrix/synapse.nix @@ -1121,7 +1121,7 @@ in { The client listener on matrix-synapse is configured to use UNIX domain sockets. This configuration is incompatible with the `register_new_matrix_user` script. - Disable `services.mastrix-synapse.enableRegistrationScript` to continue. + Disable `services.matrix-synapse.enableRegistrationScript` to continue. ''; } ] diff --git a/nixos/modules/services/misc/graphical-desktop.nix b/nixos/modules/services/misc/graphical-desktop.nix index a88c02e610bf4..c8fe0d921c6ad 100644 --- a/nixos/modules/services/misc/graphical-desktop.nix +++ b/nixos/modules/services/misc/graphical-desktop.nix @@ -38,7 +38,7 @@ in fonts.enableDefaultPackages = lib.mkDefault true; - hardware.opengl.enable = lib.mkDefault true; + hardware.graphics.enable = lib.mkDefault true; programs.gnupg.agent.pinentryPackage = lib.mkOverride 1100 pkgs.pinentry-gnome3; diff --git a/nixos/modules/services/misc/snapper.nix b/nixos/modules/services/misc/snapper.nix index a42fca5b60289..1b16ef7958ad2 100644 --- a/nixos/modules/services/misc/snapper.nix +++ b/nixos/modules/services/misc/snapper.nix @@ -1,16 +1,32 @@ -{ config, pkgs, lib, ... }: +{ + config, + pkgs, + lib, + ... +}: with lib; let cfg = config.services.snapper; - mkValue = v: - if isList v then "\"${concatMapStringsSep " " (escape [ "\\" " " ]) v}\"" - else if v == true then "yes" - else if v == false then "no" - else if isString v then "\"${v}\"" - else builtins.toJSON v; + mkValue = + v: + if isList v then + "\"${ + concatMapStringsSep " " (escape [ + "\\" + " " + ]) v + }\"" + else if v == true then + "yes" + else if v == false then + "no" + else if isString v then + "\"${v}\"" + else + builtins.toJSON v; mkKeyValue = k: v: "${k}=${mkValue v}"; @@ -43,7 +59,7 @@ let ALLOW_GROUPS = mkOption { type = types.listOf safeStr; - default = []; + default = [ ]; description = '' List of groups allowed to operate with the config. @@ -53,7 +69,7 @@ let ALLOW_USERS = mkOption { type = types.listOf safeStr; - default = []; + default = [ ]; example = [ "alice" ]; description = '' List of users allowed to operate with the config. "root" is always @@ -78,6 +94,54 @@ let Defines whether hourly snapshots should be created. ''; }; + + TIMELINE_LIMIT_HOURLY = mkOption { + type = types.str; + default = "10"; + description = '' + Limits for timeline cleanup. + ''; + }; + + TIMELINE_LIMIT_DAILY = mkOption { + type = types.str; + default = "10"; + description = '' + Limits for timeline cleanup. + ''; + }; + + TIMELINE_LIMIT_WEEKLY = mkOption { + type = types.str; + default = "0"; + description = '' + Limits for timeline cleanup. + ''; + }; + + TIMELINE_LIMIT_MONTHLY = mkOption { + type = types.str; + default = "10"; + description = '' + Limits for timeline cleanup. + ''; + }; + + TIMELINE_LIMIT_QUARTERLY = mkOption { + type = types.str; + default = "0"; + description = '' + Limits for timeline cleanup. + ''; + }; + + TIMELINE_LIMIT_YEARLY = mkOption { + type = types.str; + default = "10"; + description = '' + Limits for timeline cleanup. + ''; + }; }; in @@ -152,112 +216,129 @@ in is valid here, even if NixOS doesn't document it. ''; - type = types.attrsOf (types.submodule { - freeformType = types.attrsOf (types.oneOf [ (types.listOf safeStr) types.bool safeStr types.number ]); - - options = configOptions; - }); + type = types.attrsOf ( + types.submodule { + freeformType = types.attrsOf ( + types.oneOf [ + (types.listOf safeStr) + types.bool + safeStr + types.number + ] + ); + + options = configOptions; + } + ); }; }; - config = mkIf (cfg.configs != {}) (let - documentation = [ "man:snapper(8)" "man:snapper-configs(5)" ]; - in { - - environment = { - - systemPackages = [ pkgs.snapper ]; - - # Note: snapper/config-templates/default is only needed for create-config - # which is not the NixOS way to configure. - etc = { - - "sysconfig/snapper".text = '' - SNAPPER_CONFIGS="${lib.concatStringsSep " " (builtins.attrNames cfg.configs)}" - ''; - - } - // (mapAttrs' (name: subvolume: nameValuePair "snapper/configs/${name}" ({ - text = lib.generators.toKeyValue { inherit mkKeyValue; } (filterAttrs (k: v: v != defaultOf k) subvolume); - })) cfg.configs) - // (lib.optionalAttrs (cfg.filters != null) { - "snapper/filters/default.txt".text = cfg.filters; - }); - - }; + config = mkIf (cfg.configs != { }) ( + let + documentation = [ + "man:snapper(8)" + "man:snapper-configs(5)" + ]; + in + { + environment = { + + systemPackages = [ pkgs.snapper ]; + + # Note: snapper/config-templates/default is only needed for create-config + # which is not the NixOS way to configure. + etc = + { + + "sysconfig/snapper".text = '' + SNAPPER_CONFIGS="${lib.concatStringsSep " " (builtins.attrNames cfg.configs)}" + ''; + } + // (mapAttrs' ( + name: subvolume: + nameValuePair "snapper/configs/${name}" ({ + text = lib.generators.toKeyValue { inherit mkKeyValue; } ( + filterAttrs (k: v: v != defaultOf k) subvolume + ); + }) + ) cfg.configs) + // (lib.optionalAttrs (cfg.filters != null) { "snapper/filters/default.txt".text = cfg.filters; }); + }; - services.dbus.packages = [ pkgs.snapper ]; - - systemd.services.snapperd = { - description = "DBus interface for snapper"; - inherit documentation; - serviceConfig = { - Type = "dbus"; - BusName = "org.opensuse.Snapper"; - ExecStart = "${pkgs.snapper}/bin/snapperd"; - CapabilityBoundingSet = "CAP_DAC_OVERRIDE CAP_FOWNER CAP_CHOWN CAP_FSETID CAP_SETFCAP CAP_SYS_ADMIN CAP_SYS_MODULE CAP_IPC_LOCK CAP_SYS_NICE"; - LockPersonality = true; - NoNewPrivileges = false; - PrivateNetwork = true; - ProtectHostname = true; - RestrictAddressFamilies = "AF_UNIX"; - RestrictRealtime = true; + services.dbus.packages = [ pkgs.snapper ]; + + systemd.services.snapperd = { + description = "DBus interface for snapper"; + inherit documentation; + serviceConfig = { + Type = "dbus"; + BusName = "org.opensuse.Snapper"; + ExecStart = "${pkgs.snapper}/bin/snapperd"; + CapabilityBoundingSet = "CAP_DAC_OVERRIDE CAP_FOWNER CAP_CHOWN CAP_FSETID CAP_SETFCAP CAP_SYS_ADMIN CAP_SYS_MODULE CAP_IPC_LOCK CAP_SYS_NICE"; + LockPersonality = true; + NoNewPrivileges = false; + PrivateNetwork = true; + ProtectHostname = true; + RestrictAddressFamilies = "AF_UNIX"; + RestrictRealtime = true; + }; }; - }; - systemd.services.snapper-timeline = { - description = "Timeline of Snapper Snapshots"; - inherit documentation; - requires = [ "local-fs.target" ]; - serviceConfig.ExecStart = "${pkgs.snapper}/lib/snapper/systemd-helper --timeline"; - }; + systemd.services.snapper-timeline = { + description = "Timeline of Snapper Snapshots"; + inherit documentation; + requires = [ "local-fs.target" ]; + serviceConfig.ExecStart = "${pkgs.snapper}/lib/snapper/systemd-helper --timeline"; + }; - systemd.timers.snapper-timeline = { - wantedBy = [ "timers.target" ]; - timerConfig = { - Persistent = cfg.persistentTimer; - OnCalendar = cfg.snapshotInterval; + systemd.timers.snapper-timeline = { + wantedBy = [ "timers.target" ]; + timerConfig = { + Persistent = cfg.persistentTimer; + OnCalendar = cfg.snapshotInterval; + }; }; - }; - systemd.services.snapper-cleanup = { - description = "Cleanup of Snapper Snapshots"; - inherit documentation; - serviceConfig.ExecStart = "${pkgs.snapper}/lib/snapper/systemd-helper --cleanup"; - }; + systemd.services.snapper-cleanup = { + description = "Cleanup of Snapper Snapshots"; + inherit documentation; + serviceConfig.ExecStart = "${pkgs.snapper}/lib/snapper/systemd-helper --cleanup"; + }; - systemd.timers.snapper-cleanup = { - description = "Cleanup of Snapper Snapshots"; - inherit documentation; - wantedBy = [ "timers.target" ]; - requires = [ "local-fs.target" ]; - timerConfig.OnBootSec = "10m"; - timerConfig.OnUnitActiveSec = cfg.cleanupInterval; - }; + systemd.timers.snapper-cleanup = { + description = "Cleanup of Snapper Snapshots"; + inherit documentation; + wantedBy = [ "timers.target" ]; + requires = [ "local-fs.target" ]; + timerConfig.OnBootSec = "10m"; + timerConfig.OnUnitActiveSec = cfg.cleanupInterval; + }; - systemd.services.snapper-boot = lib.optionalAttrs cfg.snapshotRootOnBoot { - description = "Take snapper snapshot of root on boot"; - inherit documentation; - serviceConfig.ExecStart = "${pkgs.snapper}/bin/snapper --config root create --cleanup-algorithm number --description boot"; - serviceConfig.Type = "oneshot"; - requires = [ "local-fs.target" ]; - wantedBy = [ "multi-user.target" ]; - unitConfig.ConditionPathExists = "/etc/snapper/configs/root"; - }; + systemd.services.snapper-boot = lib.mkIf cfg.snapshotRootOnBoot { + description = "Take snapper snapshot of root on boot"; + inherit documentation; + serviceConfig.ExecStart = "${pkgs.snapper}/bin/snapper --config root create --cleanup-algorithm number --description boot"; + serviceConfig.Type = "oneshot"; + requires = [ "local-fs.target" ]; + wantedBy = [ "multi-user.target" ]; + unitConfig.ConditionPathExists = "/etc/snapper/configs/root"; + }; - assertions = - concatMap - (name: - let - sub = cfg.configs.${name}; - in - [ { assertion = !(sub ? extraConfig); - message = '' - The option definition `services.snapper.configs.${name}.extraConfig' no longer has any effect; please remove it. - The contents of this option should be migrated to attributes on `services.snapper.configs.${name}'. - ''; - } - ] ++ + assertions = concatMap ( + name: + let + sub = cfg.configs.${name}; + in + [ + { + assertion = !(sub ? extraConfig); + message = '' + The option definition `services.snapper.configs.${name}.extraConfig' no longer has any effect; please remove it. + The contents of this option should be migrated to attributes on `services.snapper.configs.${name}'. + ''; + } + ] + ++ map (attr: { assertion = !(hasAttr attr sub); @@ -265,8 +346,11 @@ in The option definition `services.snapper.configs.${name}.${attr}' has been renamed to `services.snapper.configs.${name}.${toUpper attr}'. ''; }) - [ "fstype" "subvolume" ] - ) - (attrNames cfg.configs); - }); + [ + "fstype" + "subvolume" + ] + ) (attrNames cfg.configs); + } + ); } diff --git a/nixos/modules/services/monitoring/grafana-reporter.nix b/nixos/modules/services/monitoring/grafana-reporter.nix index 340ab7abd19b7..528041cab37af 100644 --- a/nixos/modules/services/monitoring/grafana-reporter.nix +++ b/nixos/modules/services/monitoring/grafana-reporter.nix @@ -60,7 +60,7 @@ in { "-templates ${cfg.templateDir}" ]; in { - ExecStart = "${pkgs.grafana_reporter}/bin/grafana-reporter ${args}"; + ExecStart = "${pkgs.grafana-reporter}/bin/grafana-reporter ${args}"; }; }; }; diff --git a/nixos/modules/services/monitoring/netdata.nix b/nixos/modules/services/monitoring/netdata.nix index 90e00e91deed2..8f89408bdea59 100644 --- a/nixos/modules/services/monitoring/netdata.nix +++ b/nixos/modules/services/monitoring/netdata.nix @@ -13,6 +13,9 @@ let ln -s /run/wrappers/bin/slabinfo.plugin $out/libexec/netdata/plugins.d/slabinfo.plugin ln -s /run/wrappers/bin/freeipmi.plugin $out/libexec/netdata/plugins.d/freeipmi.plugin ln -s /run/wrappers/bin/systemd-journal.plugin $out/libexec/netdata/plugins.d/systemd-journal.plugin + ln -s /run/wrappers/bin/logs-management.plugin $out/libexec/netdata/plugins.d/logs-management.plugin + ln -s /run/wrappers/bin/network-viewer.plugin $out/libexec/netdata/plugins.d/network-viewer.plugin + ln -s /run/wrappers/bin/debugfs.plugin $out/libexec/netdata/plugins.d/debugfs.plugin ''; plugins = [ @@ -47,6 +50,7 @@ let defaultUser = "netdata"; + isThereAnyWireGuardTunnels = config.networking.wireguard.enable || lib.any (c: lib.hasAttrByPath [ "netdevConfig" "Kind" ] c && c.netdevConfig.Kind == "wireguard") (builtins.attrValues config.systemd.network.netdevs); in { options = { services.netdata = { @@ -86,6 +90,14 @@ in { Whether to enable python-based plugins ''; }; + recommendedPythonPackages = mkOption { + type = types.bool; + default = false; + description = '' + Whether to enable a set of recommended Python plugins + by installing extra Python packages. + ''; + }; extraPackages = mkOption { type = types.functionTo (types.listOf types.package); default = ps: []; @@ -198,13 +210,26 @@ in { } ]; + # Includes a set of recommended Python plugins in exchange of imperfect disk consumption. + services.netdata.python.extraPackages = lib.mkIf cfg.python.recommendedPythonPackages (ps: [ + ps.requests + ps.pandas + ps.numpy + ps.psycopg2 + ps.python-ldap + ps.netdata-pandas + ps.changefinder + ]); + services.netdata.configDir.".opt-out-from-anonymous-statistics" = mkIf (!cfg.enableAnalyticsReporting) (pkgs.writeText ".opt-out-from-anonymous-statistics" ""); environment.etc."netdata/netdata.conf".source = configFile; environment.etc."netdata/conf.d".source = configDirectory; systemd.services.netdata = { description = "Real time performance monitoring"; - after = [ "network.target" ]; + after = [ "network.target" "suid-sgid-wrappers.service" ]; + # No wrapper means no "useful" netdata. + requires = [ "suid-sgid-wrappers.service" ]; wantedBy = [ "multi-user.target" ]; path = (with pkgs; [ curl @@ -213,10 +238,16 @@ in { which procps bash + nvme-cli # for go.d + iw # for charts.d + apcupsd # for charts.d + # TODO: firehol # for FireQoS -- this requires more NixOS module support. util-linux # provides logger command; required for syslog health alarms ]) ++ lib.optional cfg.python.enable (pkgs.python3.withPackages cfg.python.extraPackages) - ++ lib.optional config.virtualisation.libvirtd.enable (config.virtualisation.libvirtd.package); + ++ lib.optional config.virtualisation.libvirtd.enable config.virtualisation.libvirtd.package + ++ lib.optional config.virtualisation.docker.enable config.virtualisation.docker.package + ++ lib.optionals config.virtualisation.podman.enable [ pkgs.jq config.virtualisation.podman.package ]; environment = { PYTHONPATH = "${cfg.package}/libexec/netdata/python.d/python_modules"; NETDATA_PIPENAME = "/run/netdata/ipc"; @@ -256,6 +287,8 @@ in { # Configuration directory and mode ConfigurationDirectory = "netdata"; ConfigurationDirectoryMode = "0755"; + # AmbientCapabilities + AmbientCapabilities = lib.optional isThereAnyWireGuardTunnels "CAP_NET_ADMIN"; # Capabilities CapabilityBoundingSet = [ "CAP_DAC_OVERRIDE" # is required for freeipmi and slabinfo plugins @@ -269,7 +302,7 @@ in { "CAP_SYS_CHROOT" # is required for cgroups plugin "CAP_SETUID" # is required for cgroups and cgroups-network plugins "CAP_SYSLOG" # is required for systemd-journal plugin - ]; + ] ++ lib.optional isThereAnyWireGuardTunnels "CAP_NET_ADMIN"; # Sandboxing ProtectSystem = "full"; ProtectHome = "read-only"; @@ -308,6 +341,14 @@ in { permissions = "u+rx,g+x,o-rwx"; }; + "debugfs.plugin" = { + source = "${cfg.package}/libexec/netdata/plugins.d/debugfs.plugin.org"; + capabilities = "cap_dac_read_search+ep"; + owner = cfg.user; + group = cfg.group; + permissions = "u+rx,g+x,o-rwx"; + }; + "cgroup-network" = { source = "${cfg.package}/libexec/netdata/plugins.d/cgroup-network.org"; capabilities = "cap_setuid+ep"; @@ -332,6 +373,14 @@ in { permissions = "u+rx,g+x,o-rwx"; }; + "logs-management.plugin" = { + source = "${cfg.package}/libexec/netdata/plugins.d/logs-management.plugin.org"; + capabilities = "cap_dac_read_search,cap_syslog+ep"; + owner = cfg.user; + group = cfg.group; + permissions = "u+rx,g+x,o-rwx"; + }; + "slabinfo.plugin" = { source = "${cfg.package}/libexec/netdata/plugins.d/slabinfo.plugin.org"; capabilities = "cap_dac_override+ep"; @@ -348,6 +397,14 @@ in { group = cfg.group; permissions = "u+rx,g+x,o-rwx"; }; + } // optionalAttrs (cfg.package.withNetworkViewer) { + "network-viewer.plugin" = { + source = "${cfg.package}/libexec/netdata/plugins.d/network-viewer.plugin.org"; + capabilities = "cap_sys_admin,cap_dac_read_search,cap_sys_ptrace+ep"; + owner = cfg.user; + group = cfg.group; + permissions = "u+rx,g+x,o-rwx"; + }; }; security.pam.loginLimits = [ @@ -359,6 +416,8 @@ in { ${defaultUser} = { group = defaultUser; isSystemUser = true; + extraGroups = lib.optional config.virtualisation.docker.enable "docker" + ++ lib.optional config.virtualisation.podman.enable "podman"; }; }; diff --git a/nixos/modules/services/network-filesystems/davfs2.nix b/nixos/modules/services/network-filesystems/davfs2.nix index 9a7d0daa6421f..49a363476c975 100644 --- a/nixos/modules/services/network-filesystems/davfs2.nix +++ b/nixos/modules/services/network-filesystems/davfs2.nix @@ -4,7 +4,7 @@ let inherit (lib.attrsets) optionalAttrs; inherit (lib.generators) toINIWithGlobalSection; inherit (lib.lists) optional; - inherit (lib.modules) mkIf; + inherit (lib.modules) mkIf mkRemovedOptionModule; inherit (lib.options) literalExpression mkEnableOption mkOption; inherit (lib.strings) escape; inherit (lib.types) attrsOf bool int lines oneOf str submodule; @@ -27,6 +27,13 @@ let in { + imports = [ + (mkRemovedOptionModule [ "services" "davfs2" "extraConfig" ] '' + The option extraConfig got removed, please migrate to + services.davfs2.settings instead. + '') + ]; + options.services.davfs2 = { enable = mkEnableOption "davfs2"; diff --git a/nixos/modules/services/network-filesystems/samba.nix b/nixos/modules/services/network-filesystems/samba.nix index 66ef3f14ed700..c70d0cf7beac3 100644 --- a/nixos/modules/services/network-filesystems/samba.nix +++ b/nixos/modules/services/network-filesystems/samba.nix @@ -201,14 +201,10 @@ in message = "If samba.nsswins is enabled, then samba.enableWinbindd must also be enabled"; } ]; - # Always provide a smb.conf to shut up programs like smbclient and smbspool. - environment.etc."samba/smb.conf".source = mkOptionDefault ( - if cfg.enable then configFile - else pkgs.writeText "smb-dummy.conf" "# Samba is disabled." - ); } (mkIf cfg.enable { + environment.etc."samba/smb.conf".source = configFile; system.nssModules = optional cfg.nsswins samba; system.nssDatabases.hosts = optional cfg.nsswins "wins"; diff --git a/nixos/modules/services/networking/netbird.nix b/nixos/modules/services/networking/netbird.nix index 7add377896cab..e68c39946fe3b 100644 --- a/nixos/modules/services/networking/netbird.nix +++ b/nixos/modules/services/networking/netbird.nix @@ -37,7 +37,6 @@ in { meta.maintainers = with maintainers; [ misuzu - thubrecht ]; meta.doc = ./netbird.md; diff --git a/nixos/modules/services/networking/netbird/server.nix b/nixos/modules/services/networking/netbird/server.nix index 2b6ad696646e9..e3de286a04fa4 100644 --- a/nixos/modules/services/networking/netbird/server.nix +++ b/nixos/modules/services/networking/netbird/server.nix @@ -16,7 +16,7 @@ in { meta = { - maintainers = with lib.maintainers; [thubrecht patrickdag]; + maintainers = with lib.maintainers; [patrickdag]; doc = ./server.md; }; diff --git a/nixos/modules/services/networking/wstunnel.nix b/nixos/modules/services/networking/wstunnel.nix index 1b169567624c0..bd7536351955a 100644 --- a/nixos/modules/services/networking/wstunnel.nix +++ b/nixos/modules/services/networking/wstunnel.nix @@ -1,83 +1,94 @@ -{ config, lib, options, pkgs, utils, ... }: -with lib; +{ config +, lib +, pkgs +, ... +}: + let cfg = config.services.wstunnel; - attrsToArgs = attrs: utils.escapeSystemdExecArgs ( - mapAttrsToList - (name: value: if value == true then "--${name}" else "--${name}=${value}") - attrs - ); - hostPortToString = { host, port }: "${host}:${builtins.toString port}"; + hostPortToString = { host, port }: "${host}:${toString port}"; hostPortSubmodule = { options = { - host = mkOption { + host = lib.mkOption { description = "The hostname."; - type = types.str; + type = lib.types.str; }; - port = mkOption { + port = lib.mkOption { description = "The port."; - type = types.port; + type = lib.types.port; }; }; }; commonOptions = { - enable = mkOption { - description = "Whether to enable this `wstunnel` instance."; - type = types.bool; + enable = lib.mkEnableOption "this `wstunnel` instance." // { default = true; }; - package = mkPackageOption pkgs "wstunnel" {}; + package = lib.mkPackageOption pkgs "wstunnel" { }; - autoStart = mkOption { - description = "Whether this tunnel server should be started automatically."; - type = types.bool; - default = true; - }; + autoStart = + lib.mkEnableOption "starting this wstunnel instance automatically." // { + default = true; + }; - extraArgs = mkOption { - description = "Extra command line arguments to pass to `wstunnel`. Attributes of the form `argName = true;` will be translated to `--argName`, and `argName = \"value\"` to `--argName=value`."; - type = with types; attrsOf (either str bool); - default = {}; + extraArgs = lib.mkOption { + description = '' + Extra command line arguments to pass to `wstunnel`. + Attributes of the form `argName = true;` will be translated to `--argName`, + and `argName = \"value\"` to `--argName value`. + ''; + type = with lib.types; attrsOf (either str bool); + default = { }; example = { "someNewOption" = true; "someNewOptionWithValue" = "someValue"; }; }; - loggingLevel = mkOption { + loggingLevel = lib.mkOption { description = '' Passed to --log-lvl Control the log verbosity. i.e: TRACE, DEBUG, INFO, WARN, ERROR, OFF For more details, checkout [EnvFilter](https://docs.rs/tracing-subscriber/latest/tracing_subscriber/filter/struct.EnvFilter.html#example-syntax) ''; - type = types.nullOr types.str; + type = lib.types.nullOr lib.types.str; example = "INFO"; default = null; }; - environmentFile = mkOption { - description = "Environment file to be passed to the systemd service. Useful for passing secrets to the service to prevent them from being world-readable in the Nix store. Note however that the secrets are passed to `wstunnel` through the command line, which makes them locally readable for all users of the system at runtime."; - type = types.nullOr types.path; + environmentFile = lib.mkOption { + description = '' + Environment file to be passed to the systemd service. + Useful for passing secrets to the service to prevent them from being + world-readable in the Nix store. + Note however that the secrets are passed to `wstunnel` through + the command line, which makes them locally readable for all users of + the system at runtime. + ''; + type = lib.types.nullOr lib.types.path; default = null; example = "/var/lib/secrets/wstunnelSecrets"; }; }; - serverSubmodule = { config, ...}: { + serverSubmodule = { config, ... }: { options = commonOptions // { - listen = mkOption { - description = "Address and port to listen on. Setting the port to a value below 1024 will also give the process the required `CAP_NET_BIND_SERVICE` capability."; - type = types.submodule hostPortSubmodule; + listen = lib.mkOption { + description = '' + Address and port to listen on. + Setting the port to a value below 1024 will also give the process + the required `CAP_NET_BIND_SERVICE` capability. + ''; + type = lib.types.submodule hostPortSubmodule; default = { host = "0.0.0.0"; port = if config.enableHTTPS then 443 else 80; }; - defaultText = literalExpression '' + defaultText = lib.literalExpression '' { host = "0.0.0.0"; port = if enableHTTPS then 443 else 80; @@ -85,39 +96,50 @@ let ''; }; - restrictTo = mkOption { - description = "Accepted traffic will be forwarded only to this service. Set to `null` to allow forwarding to arbitrary addresses."; - type = types.listOf (types.submodule hostPortSubmodule); - default = []; + restrictTo = lib.mkOption { + description = '' + Accepted traffic will be forwarded only to this service. + ''; + type = lib.types.listOf (lib.types.submodule hostPortSubmodule); + default = [ ]; example = [{ host = "127.0.0.1"; port = 51820; }]; }; - enableHTTPS = mkOption { + enableHTTPS = lib.mkOption { description = "Use HTTPS for the tunnel server."; - type = types.bool; + type = lib.types.bool; default = true; }; - tlsCertificate = mkOption { - description = "TLS certificate to use instead of the hardcoded one in case of HTTPS connections. Use together with `tlsKey`."; - type = types.nullOr types.path; + tlsCertificate = lib.mkOption { + description = '' + TLS certificate to use instead of the hardcoded one in case of HTTPS connections. + Use together with `tlsKey`. + ''; + type = lib.types.nullOr lib.types.path; default = null; example = "/var/lib/secrets/cert.pem"; }; - tlsKey = mkOption { - description = "TLS key to use instead of the hardcoded on in case of HTTPS connections. Use together with `tlsCertificate`."; - type = types.nullOr types.path; + tlsKey = lib.mkOption { + description = '' + TLS key to use instead of the hardcoded on in case of HTTPS connections. + Use together with `tlsCertificate`. + ''; + type = lib.types.nullOr lib.types.path; default = null; example = "/var/lib/secrets/key.pem"; }; - useACMEHost = mkOption { - description = "Use a certificate generated by the NixOS ACME module for the given host. Note that this will not generate a new certificate - you will need to do so with `security.acme.certs`."; - type = types.nullOr types.str; + useACMEHost = lib.mkOption { + description = '' + Use a certificate generated by the NixOS ACME module for the given host. + Note that this will not generate a new certificate - you will need to do so with `security.acme.certs`. + ''; + type = lib.types.nullOr lib.types.str; default = null; example = "example.com"; }; @@ -126,95 +148,113 @@ let clientSubmodule = { config, ... }: { options = commonOptions // { - connectTo = mkOption { + connectTo = lib.mkOption { description = "Server address and port to connect to."; - type = types.str; + type = lib.types.str; example = "https://wstunnel.server.com:8443"; }; - localToRemote = mkOption { + localToRemote = lib.mkOption { description = ''Listen on local and forwards traffic from remote.''; - type = types.listOf (types.str); - default = []; + type = lib.types.listOf (lib.types.str); + default = [ ]; example = [ "tcp://1212:google.com:443" "unix:///tmp/wstunnel.sock:g.com:443" ]; }; - remoteToLocal = mkOption { + remoteToLocal = lib.mkOption { description = "Listen on remote and forwards traffic from local. Only tcp is supported"; - type = types.listOf (types.str); - default = []; + type = lib.types.listOf lib.types.str; + default = [ ]; example = [ "tcp://1212:google.com:443" "unix://wstunnel.sock:g.com:443" ]; }; - addNetBind = mkEnableOption "Whether add CAP_NET_BIND_SERVICE to the tunnel service, this should be enabled if you want to bind port < 1024"; + addNetBind = lib.mkEnableOption "Whether add CAP_NET_BIND_SERVICE to the tunnel service, this should be enabled if you want to bind port < 1024"; - httpProxy = mkOption { + httpProxy = lib.mkOption { description = '' Proxy to use to connect to the wstunnel server (`USER:PASS@HOST:PORT`). ::: {.warning} - Passwords specified here will be world-readable in the Nix store! To pass a password to the service, point the `environmentFile` option to a file containing `PROXY_PASSWORD=<your-password-here>` and set this option to `<user>:$PROXY_PASSWORD@<host>:<port>`. Note however that this will also locally leak the passwords at runtime via e.g. /proc/<pid>/cmdline. - + Passwords specified here will be world-readable in the Nix store! + To pass a password to the service, point the `environmentFile` option + to a file containing `PROXY_PASSWORD=<your-password-here>` and set + this option to `<user>:$PROXY_PASSWORD@<host>:<port>`. + Note however that this will also locally leak the passwords at + runtime via e.g. /proc/<pid>/cmdline. ::: ''; - type = types.nullOr types.str; + type = lib.types.nullOr lib.types.str; default = null; }; - soMark = mkOption { - description = "Mark network packets with the SO_MARK sockoption with the specified value. Setting this option will also enable the required `CAP_NET_ADMIN` capability for the systemd service."; - type = types.nullOr types.int; + soMark = lib.mkOption { + description = '' + Mark network packets with the SO_MARK sockoption with the specified value. + Setting this option will also enable the required `CAP_NET_ADMIN` capability + for the systemd service. + ''; + type = lib.types.nullOr lib.types.ints.unsigned; default = null; }; - upgradePathPrefix = mkOption { - description = "Use a specific HTTP path prefix that will show up in the upgrade request to the `wstunnel` server. Useful when running `wstunnel` behind a reverse proxy."; - type = types.nullOr types.str; + upgradePathPrefix = lib.mkOption { + description = '' + Use a specific HTTP path prefix that will show up in the upgrade + request to the `wstunnel` server. + Useful when running `wstunnel` behind a reverse proxy. + ''; + type = lib.types.nullOr lib.types.str; default = null; example = "wstunnel"; }; - tlsSNI = mkOption { + tlsSNI = lib.mkOption { description = "Use this as the SNI while connecting via TLS. Useful for circumventing hostname-based firewalls."; - type = types.nullOr types.str; + type = lib.types.nullOr lib.types.str; default = null; }; - tlsVerifyCertificate = mkOption { + tlsVerifyCertificate = lib.mkOption { description = "Whether to verify the TLS certificate of the server. It might be useful to set this to `false` when working with the `tlsSNI` option."; - type = types.bool; + type = lib.types.bool; default = true; }; # The original argument name `websocketPingFrequency` is a misnomer, as the frequency is the inverse of the interval. - websocketPingInterval = mkOption { + websocketPingInterval = lib.mkOption { description = "Frequency at which the client will send websocket ping to the server."; - type = types.nullOr types.ints.unsigned; + type = lib.types.nullOr lib.types.ints.unsigned; default = null; }; - upgradeCredentials = mkOption { + upgradeCredentials = lib.mkOption { description = '' - Use these credentials to authenticate during the HTTP upgrade request (Basic authorization type, `USER:[PASS]`). + Use these credentials to authenticate during the HTTP upgrade request + (Basic authorization type, `USER:[PASS]`). ::: {.warning} - Passwords specified here will be world-readable in the Nix store! To pass a password to the service, point the `environmentFile` option to a file containing `HTTP_PASSWORD=<your-password-here>` and set this option to `<user>:$HTTP_PASSWORD`. Note however that this will also locally leak the passwords at runtime via e.g. /proc/<pid>/cmdline. + Passwords specified here will be world-readable in the Nix store! + To pass a password to the service, point the `environmentFile` option + to a file containing `HTTP_PASSWORD=<your-password-here>` and set this + option to `<user>:$HTTP_PASSWORD`. + Note however that this will also locally leak the passwords at runtime + via e.g. /proc/<pid>/cmdline. ::: ''; - type = types.nullOr types.str; + type = lib.types.nullOr lib.types.str; default = null; }; - customHeaders = mkOption { + customHeaders = lib.mkOption { description = "Custom HTTP headers to send during the upgrade request."; - type = types.attrsOf types.str; - default = {}; + type = lib.types.attrsOf lib.types.str; + default = { }; example = { "X-Some-Header" = "some-value"; }; @@ -224,49 +264,63 @@ let generateServerUnit = name: serverCfg: { name = "wstunnel-server-${name}"; - value = { - description = "wstunnel server - ${name}"; - requires = [ "network.target" "network-online.target" ]; - after = [ "network.target" "network-online.target" ]; - wantedBy = optional serverCfg.autoStart "multi-user.target"; - - serviceConfig = let - certConfig = config.security.acme.certs."${serverCfg.useACMEHost}"; - in { - Type = "simple"; - ExecStart = with serverCfg; let - resolvedTlsCertificate = if useACMEHost != null - then "${certConfig.directory}/fullchain.pem" - else tlsCertificate; - resolvedTlsKey = if useACMEHost != null - then "${certConfig.directory}/key.pem" - else tlsKey; - in '' - ${package}/bin/wstunnel \ + value = + let + certConfig = config.security.acme.certs.${serverCfg.useACMEHost}; + in + { + description = "wstunnel server - ${name}"; + requires = [ "network.target" "network-online.target" ]; + after = [ "network.target" "network-online.target" ]; + wantedBy = lib.optional serverCfg.autoStart "multi-user.target"; + + environment.RUST_LOG = serverCfg.loggingLevel; + + serviceConfig = { + Type = "exec"; + EnvironmentFile = + lib.optional (serverCfg.environmentFile != null) serverCfg.environmentFile; + DynamicUser = true; + SupplementaryGroups = + lib.optional (serverCfg.useACMEHost != null) certConfig.group; + PrivateTmp = true; + AmbientCapabilities = + lib.optionals (serverCfg.listen.port < 1024) [ "CAP_NET_BIND_SERVICE" ]; + NoNewPrivileges = true; + RestrictNamespaces = "uts ipc pid user cgroup"; + ProtectSystem = "strict"; + ProtectHome = true; + ProtectKernelTunables = true; + ProtectKernelModules = true; + ProtectControlGroups = true; + PrivateDevices = true; + RestrictSUIDSGID = true; + + Restart = "on-failure"; + RestartSec = 2; + RestartSteps = 20; + RestartMaxDelaySec = "5min"; + }; + + script = with serverCfg; '' + ${lib.getExe package} \ server \ - ${concatStringsSep " " (builtins.map (hostPair: "--restrict-to ${utils.escapeSystemdExecArg (hostPortToString hostPair)}") restrictTo)} \ - ${optionalString (resolvedTlsCertificate != null) "--tls-certificate ${utils.escapeSystemdExecArg resolvedTlsCertificate}"} \ - ${optionalString (resolvedTlsKey != null) "--tls-private-key ${utils.escapeSystemdExecArg resolvedTlsKey}"} \ - ${optionalString (loggingLevel != null) "--log-lvl ${loggingLevel}"} \ - ${attrsToArgs extraArgs} \ - ${utils.escapeSystemdExecArg "${if enableHTTPS then "wss" else "ws"}://${hostPortToString listen}"} + ${lib.cli.toGNUCommandLineShell { } ( + lib.recursiveUpdate + { + restrict-to = map hostPortToString restrictTo; + tls-certificate = if useACMEHost != null + then "${certConfig.directory}/fullchain.pem" + else "${tlsCertificate}"; + tls-private-key = if useACMEHost != null + then "${certConfig.directory}/key.pem" + else "${tlsKey}"; + } + extraArgs + )} \ + ${lib.escapeShellArg "${if enableHTTPS then "wss" else "ws"}://${hostPortToString listen}"} ''; - EnvironmentFile = optional (serverCfg.environmentFile != null) serverCfg.environmentFile; - DynamicUser = true; - SupplementaryGroups = optional (serverCfg.useACMEHost != null) certConfig.group; - PrivateTmp = true; - AmbientCapabilities = optionals (serverCfg.listen.port < 1024) [ "CAP_NET_BIND_SERVICE" ]; - NoNewPrivileges = true; - RestrictNamespaces = "uts ipc pid user cgroup"; - ProtectSystem = "strict"; - ProtectHome = true; - ProtectKernelTunables = true; - ProtectKernelModules = true; - ProtectControlGroups = true; - PrivateDevices = true; - RestrictSUIDSGID = true; }; - }; }; generateClientUnit = name: clientCfg: { @@ -275,30 +329,19 @@ let description = "wstunnel client - ${name}"; requires = [ "network.target" "network-online.target" ]; after = [ "network.target" "network-online.target" ]; - wantedBy = optional clientCfg.autoStart "multi-user.target"; + wantedBy = lib.optional clientCfg.autoStart "multi-user.target"; + + environment.RUST_LOG = clientCfg.loggingLevel; serviceConfig = { - Type = "simple"; - ExecStart = with clientCfg; '' - ${package}/bin/wstunnel client \ - ${concatStringsSep " " (builtins.map (x: "--local-to-remote ${x}") localToRemote)} \ - ${concatStringsSep " " (builtins.map (x: "--remote-to-local ${x}") remoteToLocal)} \ - ${concatStringsSep " " (mapAttrsToList (n: v: "--http-headers \"${n}: ${v}\"") customHeaders)} \ - ${optionalString (httpProxy != null) "--http-proxy ${httpProxy}"} \ - ${optionalString (soMark != null) "--socket-so-mark=${toString soMark}"} \ - ${optionalString (upgradePathPrefix != null) "--http-upgrade-path-prefix ${upgradePathPrefix}"} \ - ${optionalString (tlsSNI != null) "--tls-sni-override ${tlsSNI}"} \ - ${optionalString tlsVerifyCertificate "--tls-verify-certificate"} \ - ${optionalString (websocketPingInterval != null) "--websocket-ping-frequency-sec ${toString websocketPingInterval}"} \ - ${optionalString (upgradeCredentials != null) "--http-upgrade-credentials ${upgradeCredentials}"} \ - ${optionalString (loggingLevel != null) "--log-lvl ${loggingLevel}"} \ - ${attrsToArgs extraArgs} \ - ${utils.escapeSystemdExecArg connectTo} - ''; - EnvironmentFile = optional (clientCfg.environmentFile != null) clientCfg.environmentFile; + Type = "exec"; + EnvironmentFile = + lib.optional (clientCfg.environmentFile != null) clientCfg.environmentFile; DynamicUser = true; PrivateTmp = true; - AmbientCapabilities = (optionals (clientCfg.soMark != null) [ "CAP_NET_ADMIN" ]) ++ (optionals (clientCfg.addNetBind) [ "CAP_NET_BIND_SERVICE" ]); + AmbientCapabilities = + (lib.optionals clientCfg.addNetBind [ "CAP_NET_BIND_SERVICE" ]) ++ + (lib.optionals (clientCfg.soMark != null) [ "CAP_NET_ADMIN" ]); NoNewPrivileges = true; RestrictNamespaces = "uts ipc pid user cgroup"; ProtectSystem = "strict"; @@ -308,17 +351,45 @@ let ProtectControlGroups = true; PrivateDevices = true; RestrictSUIDSGID = true; + + Restart = "on-failure"; + RestartSec = 2; + RestartSteps = 20; + RestartMaxDelaySec = "5min"; }; + + script = with clientCfg; '' + ${lib.getExe package} \ + client \ + ${lib.cli.toGNUCommandLineShell { } ( + lib.recursiveUpdate + { + local-to-remote = localToRemote; + remote-to-local = remoteToLocal; + http-headers = lib.mapAttrsToList (n: v: "${n}:${v}") customHeaders; + http-proxy = httpProxy; + socket-so-mark = soMark; + http-upgrade-path-prefix = upgradePathPrefix; + tls-sni-override = tlsSNI; + tls-verify-certificate = tlsVerifyCertificate; + websocket-ping-frequency-sec = websocketPingInterval; + http-upgrade-credentials = upgradeCredentials; + } + extraArgs + )} \ + ${lib.escapeShellArg connectTo} + ''; }; }; -in { +in +{ options.services.wstunnel = { - enable = mkEnableOption "wstunnel"; + enable = lib.mkEnableOption "wstunnel"; - servers = mkOption { + servers = lib.mkOption { description = "`wstunnel` servers to set up."; - type = types.attrsOf (types.submodule serverSubmodule); - default = {}; + type = lib.types.attrsOf (lib.types.submodule serverSubmodule); + default = { }; example = { "wg-tunnel" = { listen = { @@ -336,13 +407,13 @@ in { }; }; - clients = mkOption { + clients = lib.mkOption { description = "`wstunnel` clients to set up."; - type = types.attrsOf (types.submodule clientSubmodule); - default = {}; + type = lib.types.attrsOf (lib.types.submodule clientSubmodule); + default = { }; example = { "wg-tunnel" = { - connectTo = "https://wstunnel.server.com:8443"; + connectTo = "wss://wstunnel.server.com:8443"; localToRemote = [ "tcp://1212:google.com:443" "tcp://2:n.lan:4?proxy_protocol" @@ -356,28 +427,42 @@ in { }; }; - config = mkIf cfg.enable { - systemd.services = (mapAttrs' generateServerUnit (filterAttrs (n: v: v.enable) cfg.servers)) // (mapAttrs' generateClientUnit (filterAttrs (n: v: v.enable) cfg.clients)); - - assertions = (mapAttrsToList (name: serverCfg: { - assertion = !(serverCfg.useACMEHost != null && (serverCfg.tlsCertificate != null || serverCfg.tlsKey != null)); - message = '' - Options services.wstunnel.servers."${name}".useACMEHost and services.wstunnel.servers."${name}".{tlsCertificate, tlsKey} are mutually exclusive. - ''; - }) cfg.servers) ++ - (mapAttrsToList (name: serverCfg: { - assertion = !((serverCfg.tlsCertificate != null || serverCfg.tlsKey != null) && !(serverCfg.tlsCertificate != null && serverCfg.tlsKey != null)); - message = '' - services.wstunnel.servers."${name}".tlsCertificate and services.wstunnel.servers."${name}".tlsKey need to be set together. - ''; - }) cfg.servers) ++ - (mapAttrsToList (name: clientCfg: { - assertion = !(clientCfg.localToRemote == [] && clientCfg.remoteToLocal == []); - message = '' - Either one of services.wstunnel.clients."${name}".localToRemote or services.wstunnel.clients."${name}".remoteToLocal must be set. - ''; - }) cfg.clients); + config = lib.mkIf cfg.enable { + systemd.services = + (lib.mapAttrs' generateServerUnit (lib.filterAttrs (n: v: v.enable) cfg.servers)) // + (lib.mapAttrs' generateClientUnit (lib.filterAttrs (n: v: v.enable) cfg.clients)); + + assertions = + (lib.mapAttrsToList + (name: serverCfg: { + assertion = + !(serverCfg.useACMEHost != null && serverCfg.tlsCertificate != null); + message = '' + Options services.wstunnel.servers."${name}".useACMEHost and services.wstunnel.servers."${name}".{tlsCertificate, tlsKey} are mutually exclusive. + ''; + }) + cfg.servers) ++ + + (lib.mapAttrsToList + (name: serverCfg: { + assertion = + (serverCfg.tlsCertificate == null && serverCfg.tlsKey == null) || + (serverCfg.tlsCertificate != null && serverCfg.tlsKey != null); + message = '' + services.wstunnel.servers."${name}".tlsCertificate and services.wstunnel.servers."${name}".tlsKey need to be set together. + ''; + }) + cfg.servers) ++ + + (lib.mapAttrsToList + (name: clientCfg: { + assertion = !(clientCfg.localToRemote == [ ] && clientCfg.remoteToLocal == [ ]); + message = '' + Either one of services.wstunnel.clients."${name}".localToRemote or services.wstunnel.clients."${name}".remoteToLocal must be set. + ''; + }) + cfg.clients); }; - meta.maintainers = with maintainers; [ alyaeanyx neverbehave ]; + meta.maintainers = with lib.maintainers; [ alyaeanyx rvdp neverbehave ]; } diff --git a/nixos/modules/services/networking/zerotierone.nix b/nixos/modules/services/networking/zerotierone.nix index 86c1efc629a98..68c04118fdd58 100644 --- a/nixos/modules/services/networking/zerotierone.nix +++ b/nixos/modules/services/networking/zerotierone.nix @@ -4,7 +4,9 @@ with lib; let cfg = config.services.zerotierone; - localConfFile = pkgs.writeText "zt-local.conf" (builtins.toJSON cfg.localConf); + + settingsFormat = pkgs.formats.json {}; + localConfFile = settingsFormat.generate "zt-local.conf" cfg.localConf; localConfFilePath = "/var/lib/zerotier-one/local.conf"; in { @@ -41,7 +43,7 @@ in example = { settings.allowTcpFallbackRelay = false; }; - type = types.nullOr types.attrs; + type = settingsFormat.type; }; config = mkIf cfg.enable { @@ -60,7 +62,7 @@ in chown -R root:root /var/lib/zerotier-one '' + (concatMapStrings (netId: '' touch "/var/lib/zerotier-one/networks.d/${netId}.conf" - '') cfg.joinNetworks) + optionalString (cfg.localConf != null) '' + '') cfg.joinNetworks) + optionalString (cfg.localConf != {}) '' if [ -L "${localConfFilePath}" ] then rm ${localConfFilePath} diff --git a/nixos/modules/services/security/sslmate-agent.nix b/nixos/modules/services/security/sslmate-agent.nix index c850eb22a0311..57cb955a39dd9 100644 --- a/nixos/modules/services/security/sslmate-agent.nix +++ b/nixos/modules/services/security/sslmate-agent.nix @@ -6,7 +6,7 @@ let cfg = config.services.sslmate-agent; in { - meta.maintainers = with maintainers; [ wolfangaukang ]; + meta.maintainers = [ ]; options = { services.sslmate-agent = { diff --git a/nixos/modules/services/security/step-ca.nix b/nixos/modules/services/security/step-ca.nix index e9195fbd51608..43bc402e7818b 100644 --- a/nixos/modules/services/security/step-ca.nix +++ b/nixos/modules/services/security/step-ca.nix @@ -4,7 +4,7 @@ let settingsFormat = (pkgs.formats.json { }); in { - meta.maintainers = with lib.maintainers; [ mohe2015 ]; + meta.maintainers = with lib.maintainers; [ ]; options = { services.step-ca = { diff --git a/nixos/modules/services/ttys/kmscon.nix b/nixos/modules/services/ttys/kmscon.nix index 74314e1e76e40..031c5bbb383e1 100644 --- a/nixos/modules/services/ttys/kmscon.nix +++ b/nixos/modules/services/ttys/kmscon.nix @@ -107,7 +107,7 @@ in { fonts = optional (cfg.fonts != null) "font-name=${lib.concatMapStringsSep ", " (f: f.name) cfg.fonts}"; in lib.concatStringsSep "\n" (render ++ fonts); - hardware.opengl.enable = mkIf cfg.hwRender true; + hardware.graphics.enable = mkIf cfg.hwRender true; fonts = mkIf (cfg.fonts != null) { fontconfig.enable = true; diff --git a/nixos/modules/services/wayland/cage.nix b/nixos/modules/services/wayland/cage.nix index 91949f197cfed..870ae58f8646e 100644 --- a/nixos/modules/services/wayland/cage.nix +++ b/nixos/modules/services/wayland/cage.nix @@ -101,7 +101,7 @@ in { session required ${config.systemd.package}/lib/security/pam_systemd.so ''; - hardware.opengl.enable = mkDefault true; + hardware.graphics.enable = mkDefault true; systemd.targets.graphical.wants = [ "cage-tty1.service" ]; diff --git a/nixos/modules/services/web-apps/firefly-iii.nix b/nixos/modules/services/web-apps/firefly-iii.nix index 3e51bd226b02e..338f049093202 100644 --- a/nixos/modules/services/web-apps/firefly-iii.nix +++ b/nixos/modules/services/web-apps/firefly-iii.nix @@ -33,10 +33,10 @@ let ${optionalString (cfg.settings.DB_CONNECTION == "sqlite") "touch ${cfg.dataDir}/storage/database/database.sqlite"} + ${artisan} cache:clear ${artisan} package:discover ${artisan} firefly-iii:upgrade-database ${artisan} firefly-iii:laravel-passport-keys - ${artisan} cache:clear ${artisan} view:cache ${artisan} route:cache ${artisan} config:cache @@ -283,8 +283,6 @@ in { before = [ "phpfpm-firefly-iii.service" ]; serviceConfig = { ExecStart = firefly-iii-maintenance; - RuntimeDirectory = "phpfpm"; - RuntimeDirectoryPreserve = true; RemainAfterExit = true; } // commonServiceConfig; unitConfig.JoinsNamespaceOf = "phpfpm-firefly-iii.service"; diff --git a/nixos/modules/services/web-apps/keycloak.md b/nixos/modules/services/web-apps/keycloak.md index 020bee4003489..4036885ce151c 100644 --- a/nixos/modules/services/web-apps/keycloak.md +++ b/nixos/modules/services/web-apps/keycloak.md @@ -68,13 +68,11 @@ to `/auth`. See the option description for more details. ::: -[](#opt-services.keycloak.settings.hostname-strict-backchannel) -determines whether Keycloak should force all requests to go -through the frontend URL. By default, -Keycloak allows backend requests to -instead use its local hostname or IP address and may also -advertise it to clients through its OpenID Connect Discovery -endpoint. +[](#opt-services.keycloak.settings.hostname-backchannel-dynamic) +Keycloak has the capability to offer a separate URL for backchannel requests, +enabling internal communication while maintaining the use of a public URL +for frontchannel requests. Moreover, the backchannel is dynamically +resolved based on incoming headers endpoint. For more information on hostname configuration, see the [Hostname section of the Keycloak Server Installation and Configuration diff --git a/nixos/modules/services/web-apps/keycloak.nix b/nixos/modules/services/web-apps/keycloak.nix index 6d472cf48cd01..36bae2575974e 100644 --- a/nixos/modules/services/web-apps/keycloak.nix +++ b/nixos/modules/services/web-apps/keycloak.nix @@ -328,8 +328,7 @@ in }; hostname = mkOption { - type = nullOr str; - default = null; + type = str; example = "keycloak.example.com"; description = '' The hostname part of the public URL used as base for @@ -340,16 +339,13 @@ in ''; }; - hostname-strict-backchannel = mkOption { + hostname-backchannel-dynamic = mkOption { type = bool; default = false; example = true; description = '' - Whether Keycloak should force all requests to go - through the frontend URL. By default, Keycloak allows - backend requests to instead use its local hostname or - IP address and may also advertise it to clients - through its OpenID Connect Discovery endpoint. + Enables dynamic resolving of backchannel URLs, + including hostname, scheme, port and context path. See <https://www.keycloak.org/server/hostname> for more information about hostname configuration. @@ -482,12 +478,20 @@ in message = "Setting up a local PostgreSQL db for Keycloak requires `standard_conforming_strings` turned on to work reliably"; } { - assertion = cfg.settings.hostname != null || cfg.settings.hostname-url or null != null; - message = "Setting the Keycloak hostname is required, see `services.keycloak.settings.hostname`"; + assertion = cfg.settings.hostname-url or null == null; + message = '' + The option `services.keycloak.settings.hostname-url' has been removed. + Set `services.keycloak.settings.hostname' instead. + See [New Hostname options](https://www.keycloak.org/docs/25.0.0/upgrading/#new-hostname-options) for details. + ''; } { - assertion = !(cfg.settings.hostname != null && cfg.settings.hostname-url or null != null); - message = "`services.keycloak.settings.hostname` and `services.keycloak.settings.hostname-url` are mutually exclusive"; + assertion = cfg.settings.hostname-strict-backchannel or null == null; + message = '' + The option `services.keycloak.settings.hostname-strict-backchannel' has been removed. + Set `services.keycloak.settings.hostname-backchannel-dynamic' instead. + See [New Hostname options](https://www.keycloak.org/docs/25.0.0/upgrading/#new-hostname-options) for details. + ''; } ]; diff --git a/nixos/modules/services/web-apps/mealie.nix b/nixos/modules/services/web-apps/mealie.nix index 0d41cffd3d9dd..2484b2489c0d0 100644 --- a/nixos/modules/services/web-apps/mealie.nix +++ b/nixos/modules/services/web-apps/mealie.nix @@ -59,7 +59,7 @@ in PRODUCTION = "true"; ALEMBIC_CONFIG_FILE="${pkg}/config/alembic.ini"; API_PORT = toString cfg.port; - BASE_URL = "http://localhost:${cfg.port}"; + BASE_URL = "http://localhost:${toString cfg.port}"; DATA_DIR = "/var/lib/mealie"; CRF_MODEL_PATH = "/var/lib/mealie/model.crfmodel"; } // (builtins.mapAttrs (_: val: toString val) cfg.settings); diff --git a/nixos/modules/services/web-apps/zitadel.nix b/nixos/modules/services/web-apps/zitadel.nix index 99b0a0bc56f67..ed7fae8d9dda0 100644 --- a/nixos/modules/services/web-apps/zitadel.nix +++ b/nixos/modules/services/web-apps/zitadel.nix @@ -219,5 +219,5 @@ in users.groups.zitadel = lib.mkIf (cfg.group == "zitadel") { }; }; - meta.maintainers = with lib.maintainers; [ Sorixelle ]; + meta.maintainers = [ ]; } diff --git a/nixos/modules/services/web-servers/bluemap.nix b/nixos/modules/services/web-servers/bluemap.nix index 28eaad3db313e..731468fd9a0ec 100644 --- a/nixos/modules/services/web-servers/bluemap.nix +++ b/nixos/modules/services/web-servers/bluemap.nix @@ -71,9 +71,7 @@ in { host = mkOption { type = lib.types.str; - default = "bluemap.${config.networking.domain}"; - defaultText = lib.literalExpression "bluemap.\${config.networking.domain}"; - description = "Domain to configure nginx for"; + description = "Domain on which nginx will serve the bluemap webapp"; }; onCalendar = mkOption { diff --git a/nixos/modules/services/x11/desktop-managers/phosh.nix b/nixos/modules/services/x11/desktop-managers/phosh.nix index e8494b2c017c9..12b39f927c012 100644 --- a/nixos/modules/services/x11/desktop-managers/phosh.nix +++ b/nixos/modules/services/x11/desktop-managers/phosh.nix @@ -216,7 +216,7 @@ in security.pam.services.phosh = {}; - hardware.opengl.enable = mkDefault true; + hardware.graphics.enable = mkDefault true; services.gnome.core-shell.enable = true; services.gnome.core-os-services.enable = true; diff --git a/nixos/modules/services/x11/xserver.nix b/nixos/modules/services/x11/xserver.nix index 5a86d055c2719..57e83399eded6 100644 --- a/nixos/modules/services/x11/xserver.nix +++ b/nixos/modules/services/x11/xserver.nix @@ -302,7 +302,7 @@ in default = [ "modesetting" "fbdev" ]; example = [ "nvidia" - "amdgpu-pro" + "amdgpu" ]; # TODO(@oxij): think how to easily add the rest, like those nvidia things relatedPackages = concatLists @@ -716,10 +716,7 @@ in restartIfChanged = false; - environment = - optionalAttrs config.hardware.opengl.setLdLibraryPath - { LD_LIBRARY_PATH = lib.makeLibraryPath [ pkgs.addOpenGLRunpath.driverLink ]; } - // config.services.displayManager.environment; + environment = config.services.displayManager.environment; preStart = '' diff --git a/nixos/modules/virtualisation/docker.nix b/nixos/modules/virtualisation/docker.nix index bcc649dcbec0a..8a0894ed85c3d 100644 --- a/nixos/modules/virtualisation/docker.nix +++ b/nixos/modules/virtualisation/docker.nix @@ -244,8 +244,8 @@ in }; assertions = [ - { assertion = cfg.enableNvidia && pkgs.stdenv.isx86_64 -> config.hardware.opengl.driSupport32Bit or false; - message = "Option enableNvidia on x86_64 requires 32bit support libraries"; + { assertion = cfg.enableNvidia && pkgs.stdenv.isx86_64 -> config.hardware.graphics.enable32Bit or false; + message = "Option enableNvidia on x86_64 requires 32-bit support libraries"; }]; virtualisation.docker.daemon.settings = { diff --git a/nixos/modules/virtualisation/oci-image.nix b/nixos/modules/virtualisation/oci-image.nix index d4af5016dd71c..1e2b90bfd46e2 100644 --- a/nixos/modules/virtualisation/oci-image.nix +++ b/nixos/modules/virtualisation/oci-image.nix @@ -9,10 +9,10 @@ in config = { system.build.OCIImage = import ../../lib/make-disk-image.nix { inherit config lib pkgs; + inherit (cfg) diskSize; name = "oci-image"; configFile = ./oci-config-user.nix; format = "qcow2"; - diskSize = 8192; partitionTableType = if cfg.efi then "efi" else "legacy"; }; diff --git a/nixos/modules/virtualisation/oci-options.nix b/nixos/modules/virtualisation/oci-options.nix index 0dfedc6a530c8..76f3475a42817 100644 --- a/nixos/modules/virtualisation/oci-options.nix +++ b/nixos/modules/virtualisation/oci-options.nix @@ -9,6 +9,12 @@ Whether the OCI instance is using EFI. ''; }; + diskSize = lib.mkOption { + type = lib.types.int; + default = 8192; + description = "Size of the disk image created in MB."; + example = "diskSize = 12 * 1024; # 12GiB"; + }; }; }; } diff --git a/nixos/modules/virtualisation/spice-usb-redirection.nix b/nixos/modules/virtualisation/spice-usb-redirection.nix index 255327f2622c9..1631a91ccf863 100644 --- a/nixos/modules/virtualisation/spice-usb-redirection.nix +++ b/nixos/modules/virtualisation/spice-usb-redirection.nix @@ -22,5 +22,5 @@ }; }; - meta.maintainers = [ lib.maintainers.lheckemann ]; + meta.maintainers = [ ]; } diff --git a/nixos/tests/all-tests.nix b/nixos/tests/all-tests.nix index 708332a9317b5..f2aa9c6c73147 100644 --- a/nixos/tests/all-tests.nix +++ b/nixos/tests/all-tests.nix @@ -414,6 +414,7 @@ in { pyload = handleTest ./pyload.nix {}; oci-containers = handleTestOn ["aarch64-linux" "x86_64-linux"] ./oci-containers.nix {}; odoo = handleTest ./odoo.nix {}; + odoo16 = handleTest ./odoo.nix { package = pkgs.odoo16; }; odoo15 = handleTest ./odoo.nix { package = pkgs.odoo15; }; # 9pnet_virtio used to mount /nix partition doesn't support # hibernation. This test happens to work on x86_64-linux but @@ -499,7 +500,8 @@ in { libreddit = handleTest ./libreddit.nix {}; librenms = handleTest ./librenms.nix {}; libresprite = handleTest ./libresprite.nix {}; - libreswan = handleTest ./libreswan.nix {}; + libreswan = runTest ./libreswan.nix; + libreswan-nat = runTest ./libreswan-nat.nix; librewolf = handleTest ./firefox.nix { firefoxPackage = pkgs.librewolf; }; libuiohook = handleTest ./libuiohook.nix {}; libvirtd = handleTest ./libvirtd.nix {}; @@ -834,7 +836,7 @@ in { scrutiny = handleTest ./scrutiny.nix {}; sddm = handleTest ./sddm.nix {}; seafile = handleTest ./seafile.nix {}; - searx = handleTest ./searx.nix {}; + searx = runTest ./searx.nix; seatd = handleTest ./seatd.nix {}; service-runner = handleTest ./service-runner.nix {}; sftpgo = runTest ./sftpgo.nix; @@ -1044,6 +1046,7 @@ in { wordpress = handleTest ./wordpress.nix {}; wrappers = handleTest ./wrappers.nix {}; writefreely = handleTest ./web-apps/writefreely.nix {}; + wstunnel = runTest ./wstunnel.nix; xandikos = handleTest ./xandikos.nix {}; xautolock = handleTest ./xautolock.nix {}; xfce = handleTest ./xfce.nix {}; diff --git a/nixos/tests/armagetronad.nix b/nixos/tests/armagetronad.nix index d59827354b771..ca93ce8fb6c5d 100644 --- a/nixos/tests/armagetronad.nix +++ b/nixos/tests/armagetronad.nix @@ -12,7 +12,7 @@ let { pkgs, ... }: { imports = [ ./common/user-account.nix ./common/x11.nix ]; - hardware.opengl.driSupport = true; + hardware.graphics.enable = true; virtualisation.memorySize = 256; environment = { systemPackages = [ pkgs.armagetronad ]; diff --git a/nixos/tests/cagebreak.nix b/nixos/tests/cagebreak.nix index 1fef7cb57cfc5..4d7664c1505f3 100644 --- a/nixos/tests/cagebreak.nix +++ b/nixos/tests/cagebreak.nix @@ -14,9 +14,7 @@ in }; nodes.machine = { config, ... }: - let - alice = config.users.users.alice; - in { + { # Automatically login on tty1 as a normal user: imports = [ ./common/user-account.nix ]; services.getty.autologinUser = "alice"; @@ -31,7 +29,7 @@ in fi ''; - hardware.opengl.enable = true; + hardware.graphics.enable = true; programs.xwayland.enable = true; security.polkit.enable = true; environment.systemPackages = [ pkgs.cagebreak pkgs.wayland-utils ]; diff --git a/nixos/tests/crabfit.nix b/nixos/tests/crabfit.nix index 0cd0741f6fa4b..0daf47d52f25d 100644 --- a/nixos/tests/crabfit.nix +++ b/nixos/tests/crabfit.nix @@ -4,7 +4,7 @@ import ./make-test-python.nix ( { name = "crabfit"; - meta.maintainers = with lib.maintainers; [ thubrecht ]; + meta.maintainers = with lib.maintainers; [ ]; nodes = { machine = diff --git a/nixos/tests/initrd-secrets.nix b/nixos/tests/initrd-secrets.nix index 0f3f83b0904e3..dbbdd83588491 100644 --- a/nixos/tests/initrd-secrets.nix +++ b/nixos/tests/initrd-secrets.nix @@ -9,7 +9,7 @@ let testWithCompressor = compressor: testing.makeTest { name = "initrd-secrets-${compressor}"; - meta.maintainers = [ lib.maintainers.lheckemann ]; + meta.maintainers = [ ]; nodes.machine = { ... }: { virtualisation.useBootLoader = true; diff --git a/nixos/tests/keycloak.nix b/nixos/tests/keycloak.nix index 67b412c80961d..259f1340a22d7 100644 --- a/nixos/tests/keycloak.nix +++ b/nixos/tests/keycloak.nix @@ -44,7 +44,6 @@ let }; plugins = with config.services.keycloak.package.plugins; [ keycloak-discord - keycloak-metrics-spi ]; }; environment.systemPackages = with pkgs; [ @@ -122,14 +121,6 @@ let | jq -r '"Authorization: bearer " + .access_token' >admin_auth_header """) - # Register the metrics SPI - keycloak.succeed( - """${pkgs.jre}/bin/keytool -import -alias snakeoil -file ${certs.ca.cert} -storepass aaaaaa -keystore cacert.jks -noprompt""", - """KC_OPTS='-Djavax.net.ssl.trustStore=cacert.jks -Djavax.net.ssl.trustStorePassword=aaaaaa' kcadm.sh config credentials --server '${frontendUrl}' --realm master --user admin --password "$(<${adminPasswordFile})" """, - """KC_OPTS='-Djavax.net.ssl.trustStore=cacert.jks -Djavax.net.ssl.trustStorePassword=aaaaaa' kcadm.sh update events/config -s 'eventsEnabled=true' -s 'adminEventsEnabled=true' -s 'eventsListeners+=metrics-listener'""", - """curl -sSf '${frontendUrl}/realms/master/metrics' | grep '^keycloak_admin_event_UPDATE'""" - ) - # Publish the realm, including a test OIDC client and user keycloak.succeed( "curl -sSf -H @admin_auth_header -X POST -H 'Content-Type: application/json' -d @${realmDataJson} '${frontendUrl}/admin/realms/'" diff --git a/nixos/tests/libreswan-nat.nix b/nixos/tests/libreswan-nat.nix new file mode 100644 index 0000000000000..973e304f9e3a3 --- /dev/null +++ b/nixos/tests/libreswan-nat.nix @@ -0,0 +1,238 @@ +# This test sets up an IPsec VPN server that allows a client behind an IPv4 NAT +# router to access the IPv6 internet. We check that the client initially can't +# ping an IPv6 hosts and its connection to the server can be eavesdropped by +# the router, but once the IPsec tunnel is enstablished it can talk to an +# IPv6-only host and the connection is secure. +# +# Notes: +# - the VPN is implemented using policy-based routing. +# - the client is assigned an IPv6 address from the same /64 subnet +# of the server, without DHCPv6 or SLAAC. +# - the server acts as NDP proxy for the client, so that the latter +# becomes reachable at its assigned IPv6 via the server. +# - the client falls back to TCP if UDP is blocked + +{ lib, pkgs, ... }: + +let + + # Common network setup + baseNetwork = { + # shared hosts file + networking.extraHosts = lib.mkVMOverride '' + 203.0.113.1 router + 203.0.113.2 server + 2001:db8::2 inner + 192.168.1.1 client + ''; + # open a port for testing + networking.firewall.allowedUDPPorts = [ 1234 ]; + }; + + # Common IPsec configuration + baseTunnel = { + services.libreswan.enable = true; + environment.etc."ipsec.d/tunnel.secrets" = + { text = ''@server %any : PSK "j1JbIi9WY07rxwcNQ6nbyThKCf9DGxWOyokXIQcAQUnafsNTUJxfsxwk9WYK8fHj"''; + mode = "600"; + }; + }; + + # Helpers to add a static IP address on an interface + setAddress4 = iface: addr: { + networking.interfaces.${iface}.ipv4.addresses = + lib.mkVMOverride [ { address = addr; prefixLength = 24; } ]; + }; + setAddress6 = iface: addr: { + networking.interfaces.${iface}.ipv6.addresses = + lib.mkVMOverride [ { address = addr; prefixLength = 64; } ]; + }; + +in + +{ + name = "libreswan-nat"; + meta = with lib.maintainers; { + maintainers = [ rnhmjoj ]; + }; + + nodes.router = { pkgs, ... }: lib.mkMerge [ + baseNetwork + (setAddress4 "eth1" "203.0.113.1") + (setAddress4 "eth2" "192.168.1.1") + { + virtualisation.vlans = [ 1 2 ]; + environment.systemPackages = [ pkgs.tcpdump ]; + networking.nat = { + enable = true; + externalInterface = "eth1"; + internalInterfaces = [ "eth2" ]; + }; + networking.firewall.trustedInterfaces = [ "eth2" ]; + } + ]; + + nodes.inner = lib.mkMerge [ + baseNetwork + (setAddress6 "eth1" "2001:db8::2") + { virtualisation.vlans = [ 3 ]; } + ]; + + nodes.server = lib.mkMerge [ + baseNetwork + baseTunnel + (setAddress4 "eth1" "203.0.113.2") + (setAddress6 "eth2" "2001:db8::1") + { + virtualisation.vlans = [ 1 3 ]; + networking.firewall.allowedUDPPorts = [ 500 4500 ]; + networking.firewall.allowedTCPPorts = [ 993 ]; + + # see https://github.com/NixOS/nixpkgs/pull/310857 + networking.firewall.checkReversePath = false; + + boot.kernel.sysctl = { + # enable forwarding packets + "net.ipv6.conf.all.forwarding" = 1; + "net.ipv4.conf.all.forwarding" = 1; + # enable NDP proxy for VPN clients + "net.ipv6.conf.all.proxy_ndp" = 1; + }; + + services.libreswan.configSetup = "listen-tcp=yes"; + services.libreswan.connections.tunnel = '' + # server + left=203.0.113.2 + leftid=@server + leftsubnet=::/0 + leftupdown=${pkgs.writeScript "updown" '' + # act as NDP proxy for VPN clients + if test "$PLUTO_VERB" = up-client-v6; then + ip neigh add proxy "$PLUTO_PEER_CLIENT_NET" dev eth2 + fi + if test "$PLUTO_VERB" = down-client-v6; then + ip neigh del proxy "$PLUTO_PEER_CLIENT_NET" dev eth2 + fi + ''} + + # clients + right=%any + rightaddresspool=2001:db8:0:0:c::/97 + modecfgdns=2001:db8::1 + + # clean up vanished clients + dpddelay=30 + + auto=add + keyexchange=ikev2 + rekey=no + narrowing=yes + fragmentation=yes + authby=secret + + leftikeport=993 + retransmit-timeout=10s + ''; + } + ]; + + nodes.client = lib.mkMerge [ + baseNetwork + baseTunnel + (setAddress4 "eth1" "192.168.1.2") + { + virtualisation.vlans = [ 2 ]; + networking.defaultGateway = { + address = "192.168.1.1"; + interface = "eth1"; + }; + services.libreswan.connections.tunnel = '' + # client + left=%defaultroute + leftid=@client + leftmodecfgclient=yes + leftsubnet=::/0 + + # server + right=203.0.113.2 + rightid=@server + rightsubnet=::/0 + + auto=add + narrowing=yes + rekey=yes + fragmentation=yes + authby=secret + + # fallback when UDP is blocked + enable-tcp=fallback + tcp-remoteport=993 + retransmit-timeout=5s + ''; + } + ]; + + testScript = + '' + def client_to_host(machine, msg: str): + """ + Sends a message from client to server + """ + machine.execute("nc -lu :: 1234 >/tmp/msg &") + client.sleep(1) + client.succeed(f"echo '{msg}' | nc -uw 0 {machine.name} 1234") + client.sleep(1) + machine.succeed(f"grep '{msg}' /tmp/msg") + + + def eavesdrop(): + """ + Starts eavesdropping on the router + """ + match = "udp port 1234" + router.execute(f"tcpdump -i eth1 -c 1 -Avv {match} >/tmp/log &") + + + start_all() + + with subtest("Network is up"): + client.wait_until_succeeds("ping -c1 server") + client.succeed("systemctl restart ipsec") + server.succeed("systemctl restart ipsec") + + with subtest("Router can eavesdrop cleartext traffic"): + eavesdrop() + client_to_host(server, "I secretly love turnip") + router.sleep(1) + router.succeed("grep turnip /tmp/log") + + with subtest("Libreswan is ready"): + client.wait_for_unit("ipsec") + server.wait_for_unit("ipsec") + client.succeed("ipsec checkconfig") + server.succeed("ipsec checkconfig") + + with subtest("Client can't ping VPN host"): + client.fail("ping -c1 inner") + + with subtest("Client can start the tunnel"): + client.succeed("ipsec start tunnel") + client.succeed("ip -6 addr show lo | grep -q 2001:db8:0:0:c") + + with subtest("Client can ping VPN host"): + client.wait_until_succeeds("ping -c1 2001:db8::1") + client.succeed("ping -c1 inner") + + with subtest("Eve no longer can eavesdrop"): + eavesdrop() + client_to_host(inner, "Just kidding, I actually like rhubarb") + router.sleep(1) + router.fail("grep rhubarb /tmp/log") + + with subtest("TCP fallback is available"): + server.succeed("iptables -I nixos-fw -p udp -j DROP") + client.succeed("ipsec restart") + client.execute("ipsec start tunnel") + client.wait_until_succeeds("ping -c1 inner") + ''; +} diff --git a/nixos/tests/libreswan.nix b/nixos/tests/libreswan.nix index c798a04645bc0..6dd9a845d19af 100644 --- a/nixos/tests/libreswan.nix +++ b/nixos/tests/libreswan.nix @@ -3,7 +3,7 @@ # Eve can eavesdrop the plaintext traffic between Alice and Bob, but once they # enable the secure tunnel Eve's spying becomes ineffective. -import ./make-test-python.nix ({ lib, pkgs, ... }: +{ lib, pkgs, ... }: let @@ -133,4 +133,4 @@ in eve.sleep(1) eve.fail("grep rhubarb /tmp/log") ''; -}) +} diff --git a/nixos/tests/matomo.nix b/nixos/tests/matomo.nix index 130f3dd8485a3..cf54f71b738fc 100644 --- a/nixos/tests/matomo.nix +++ b/nixos/tests/matomo.nix @@ -41,14 +41,14 @@ let in { matomo = matomoTest pkgs.matomo // { name = "matomo"; - meta.maintainers = with maintainers; [ florianjacob kiwi mmilata twey boozedog ]; + meta.maintainers = with maintainers; [ florianjacob mmilata twey boozedog ]; }; matomo-beta = matomoTest pkgs.matomo-beta // { name = "matomo-beta"; - meta.maintainers = with maintainers; [ florianjacob kiwi mmilata twey boozedog ]; + meta.maintainers = with maintainers; [ florianjacob mmilata twey boozedog ]; }; matomo_5 = matomoTest pkgs.matomo_5 // { name = "matomo-5"; - meta.maintainers = with maintainers; [ florianjacob kiwi mmilata twey boozedog ] ++ lib.teams.flyingcircus.members; + meta.maintainers = with maintainers; [ florianjacob mmilata twey boozedog ] ++ lib.teams.flyingcircus.members; }; } diff --git a/nixos/tests/monado.nix b/nixos/tests/monado.nix index 8368950951e73..6f0d27ee42454 100644 --- a/nixos/tests/monado.nix +++ b/nixos/tests/monado.nix @@ -5,7 +5,7 @@ import ./make-test-python.nix ({ pkgs, ... }: { { pkgs, ... }: { - hardware.opengl.enable = true; + hardware.graphics.enable = true; users.users.alice = { isNormalUser = true; uid = 1000; diff --git a/nixos/tests/netdata.nix b/nixos/tests/netdata.nix index e3438f63404e7..df4d342905c68 100644 --- a/nixos/tests/netdata.nix +++ b/nixos/tests/netdata.nix @@ -11,7 +11,10 @@ import ./make-test-python.nix ({ pkgs, ...} : { { pkgs, ... }: { environment.systemPackages = with pkgs; [ curl jq netdata ]; - services.netdata.enable = true; + services.netdata = { + enable = true; + python.recommendedPythonPackages = true; + }; }; }; diff --git a/nixos/tests/odoo.nix b/nixos/tests/odoo.nix index 00ae4a2137d10..45ec7b7d7a6b7 100644 --- a/nixos/tests/odoo.nix +++ b/nixos/tests/odoo.nix @@ -14,6 +14,18 @@ import ./make-test-python.nix ({ pkgs, lib, package ? pkgs.odoo, ...} : { package = package; domain = "localhost"; }; + + # odoo does not automatically initialize its database, + # even if passing what _should_ be the equivalent of these options: + # settings = { + # options = { + # database = "odoo"; + # init = "base"; + # }; + # }; + systemd.services.odoo.preStart = '' + HOME=$STATE_DIRECTORY ${package}/bin/odoo -d odoo -i base --stop-after-init --without-demo all + ''; }; }; diff --git a/nixos/tests/openarena.nix b/nixos/tests/openarena.nix index 63dc1b9a68570..4dfe71a9a1e95 100644 --- a/nixos/tests/openarena.nix +++ b/nixos/tests/openarena.nix @@ -5,7 +5,7 @@ let { pkgs, ... }: { imports = [ ./common/x11.nix ]; - hardware.opengl.driSupport = true; + hardware.graphics.enable = true; environment.systemPackages = [ pkgs.openarena ]; }; diff --git a/nixos/tests/quake3.nix b/nixos/tests/quake3.nix index 4b7ca03b365b5..ff4025e56f4c4 100644 --- a/nixos/tests/quake3.nix +++ b/nixos/tests/quake3.nix @@ -21,7 +21,7 @@ let { pkgs, ... }: { imports = [ ./common/x11.nix ]; - hardware.opengl.driSupport = true; + hardware.graphics.enable = true; environment.systemPackages = [ pkgs.quake3demo ]; nixpkgs.config.packageOverrides = overrides; nixpkgs.config.allowUnfreePredicate = unfreePredicate; diff --git a/nixos/tests/searx.nix b/nixos/tests/searx.nix index 02a88f690db78..0008424f068b2 100644 --- a/nixos/tests/searx.nix +++ b/nixos/tests/searx.nix @@ -1,4 +1,4 @@ -import ./make-test-python.nix ({ pkgs, ...} : +{ pkgs, ... }: { name = "searx"; @@ -7,108 +7,108 @@ import ./make-test-python.nix ({ pkgs, ...} : }; # basic setup: searx running the built-in webserver - nodes.base = { ... }: { - imports = [ ../modules/profiles/minimal.nix ]; - - services.searx = { - enable = true; - environmentFile = pkgs.writeText "secrets" '' - WOLFRAM_API_KEY = sometoken - SEARX_SECRET_KEY = somesecret - ''; + nodes.base = + { ... }: + { + services.searx = { + enable = true; + environmentFile = pkgs.writeText "secrets" '' + WOLFRAM_API_KEY = sometoken + SEARX_SECRET_KEY = somesecret + ''; - settings.server = - { port = "8080"; + settings.server = { + port = "8080"; bind_address = "0.0.0.0"; secret_key = "@SEARX_SECRET_KEY@"; }; - settings.engines = [ - { name = "wolframalpha"; - api_key = "@WOLFRAM_API_KEY@"; - engine = "wolframalpha_api"; - } - { name = "startpage"; - shortcut = "start"; - } - ]; - }; + settings.engines = [ + { + name = "wolframalpha"; + api_key = "@WOLFRAM_API_KEY@"; + engine = "wolframalpha_api"; + } + { + name = "startpage"; + shortcut = "start"; + } + ]; + }; - }; + }; # fancy setup: run in uWSGI and use nginx as proxy - nodes.fancy = { config, ... }: { - imports = [ ../modules/profiles/minimal.nix ]; - - services.searx = { - enable = true; - # searx refuses to run if unchanged - settings.server.secret_key = "somesecret"; - - runInUwsgi = true; - uwsgiConfig = { - # serve using the uwsgi protocol - socket = "/run/searx/uwsgi.sock"; - chmod-socket = "660"; - - # use /searx as url "mountpoint" - mount = "/searx=searx.webapp:application"; - module = ""; - manage-script-name = true; + nodes.fancy = + { config, ... }: + { + services.searx = { + enable = true; + # searx refuses to run if unchanged + settings.server.secret_key = "somesecret"; + + runInUwsgi = true; + uwsgiConfig = { + # serve using the uwsgi protocol + socket = "/run/searx/uwsgi.sock"; + chmod-socket = "660"; + + # use /searx as url "mountpoint" + mount = "/searx=searx.webapp:application"; + module = ""; + manage-script-name = true; + }; }; - }; - # use nginx as reverse proxy - services.nginx.enable = true; - services.nginx.virtualHosts.localhost = { - locations."/searx".extraConfig = - '' + # use nginx as reverse proxy + services.nginx.enable = true; + services.nginx.virtualHosts.localhost = { + locations."/searx".extraConfig = '' include ${pkgs.nginx}/conf/uwsgi_params; uwsgi_pass unix:/run/searx/uwsgi.sock; ''; - locations."/searx/static/".alias = "${config.services.searx.package}/share/static/"; - }; - - # allow nginx access to the searx socket - users.users.nginx.extraGroups = [ "searx" ]; - - }; - - testScript = - '' - base.start() - - with subtest("Settings have been merged"): - base.wait_for_unit("searx-init") - base.wait_for_file("/run/searx/settings.yml") - output = base.succeed( - "${pkgs.yq-go}/bin/yq eval" - " '.engines[] | select(.name==\"startpage\") | .shortcut'" - " /run/searx/settings.yml" - ).strip() - assert output == "start", "Settings not merged" + locations."/searx/static/".alias = "${config.services.searx.package}/share/static/"; + }; - with subtest("Environment variables have been substituted"): - base.succeed("grep -q somesecret /run/searx/settings.yml") - base.succeed("grep -q sometoken /run/searx/settings.yml") - base.copy_from_vm("/run/searx/settings.yml") + # allow nginx access to the searx socket + users.users.nginx.extraGroups = [ "searx" ]; - with subtest("Basic setup is working"): - base.wait_for_open_port(8080) - base.wait_for_unit("searx") - base.succeed( - "${pkgs.curl}/bin/curl --fail http://localhost:8080" - ) - base.shutdown() + }; - with subtest("Nginx+uWSGI setup is working"): - fancy.start() - fancy.wait_for_open_port(80) - fancy.wait_for_unit("uwsgi") - fancy.succeed( - "${pkgs.curl}/bin/curl --fail http://localhost/searx >&2" - ) - fancy.succeed( - "${pkgs.curl}/bin/curl --fail http://localhost/searx/static/themes/simple/js/leaflet.js >&2" - ) - ''; -}) + testScript = '' + base.start() + + with subtest("Settings have been merged"): + base.wait_for_unit("searx-init") + base.wait_for_file("/run/searx/settings.yml") + output = base.succeed( + "${pkgs.yq-go}/bin/yq eval" + " '.engines[] | select(.name==\"startpage\") | .shortcut'" + " /run/searx/settings.yml" + ).strip() + assert output == "start", "Settings not merged" + + with subtest("Environment variables have been substituted"): + base.succeed("grep -q somesecret /run/searx/settings.yml") + base.succeed("grep -q sometoken /run/searx/settings.yml") + base.copy_from_vm("/run/searx/settings.yml") + + with subtest("Basic setup is working"): + base.wait_for_open_port(8080) + base.wait_for_unit("searx") + base.succeed( + "${pkgs.curl}/bin/curl --fail http://localhost:8080" + ) + base.shutdown() + + with subtest("Nginx+uWSGI setup is working"): + fancy.start() + fancy.wait_for_open_port(80) + fancy.wait_for_unit("uwsgi") + fancy.succeed( + "${pkgs.curl}/bin/curl --fail http://localhost/searx >&2" + ) + fancy.succeed( + "${pkgs.curl}/bin/curl --fail http://localhost/searx/static/themes/simple/js/leaflet.js >&2" + ) + ''; +} diff --git a/nixos/tests/seatd.nix b/nixos/tests/seatd.nix index 138a6cb1cf44c..9178492fdb0ef 100644 --- a/nixos/tests/seatd.nix +++ b/nixos/tests/seatd.nix @@ -39,7 +39,7 @@ in dwl -s 'foot touch /tmp/foot_started' ''; - hardware.opengl.enable = true; + hardware.graphics.enable = true; virtualisation.qemu.options = [ "-vga none -device virtio-gpu-pci" ]; services.seatd.enable = true; }; diff --git a/nixos/tests/snapper.nix b/nixos/tests/snapper.nix index 674523584fdaa..0369419930f15 100644 --- a/nixos/tests/snapper.nix +++ b/nixos/tests/snapper.nix @@ -19,7 +19,9 @@ import ./make-test-python.nix ({ ... }: services.snapper.filters = "/nix"; }; - testScript = '' + testScript = { nodes, ... }: let + inherit (nodes.machine.services.snapper) snapshotRootOnBoot; + in '' machine.succeed("btrfs subvolume create /home/.snapshots") machine.succeed("snapper -c home list") machine.succeed("snapper -c home create --description empty") @@ -31,5 +33,6 @@ import ./make-test-python.nix ({ ... }: machine.succeed("snapper -c home delete 2") machine.succeed("systemctl --wait start snapper-timeline.service") machine.succeed("systemctl --wait start snapper-cleanup.service") + machine.${if snapshotRootOnBoot then "succeed" else "fail"}("systemctl cat snapper-boot.service") ''; }) diff --git a/nixos/tests/tigervnc.nix b/nixos/tests/tigervnc.nix index b80cb49519c45..79c4f19178d5e 100644 --- a/nixos/tests/tigervnc.nix +++ b/nixos/tests/tigervnc.nix @@ -7,7 +7,7 @@ with import ../lib/testing-python.nix { inherit system pkgs; }; makeTest { name = "tigervnc"; meta = with pkgs.lib.maintainers; { - maintainers = [ lheckemann ]; + maintainers = [ ]; }; nodes = { diff --git a/nixos/tests/timezone.nix b/nixos/tests/timezone.nix index 7fc9a5058eee9..5d0318e33daab 100644 --- a/nixos/tests/timezone.nix +++ b/nixos/tests/timezone.nix @@ -1,6 +1,6 @@ import ./make-test-python.nix ({ pkgs, ...} : { name = "timezone"; - meta.maintainers = with pkgs.lib.maintainers; [ lheckemann ]; + meta.maintainers = with pkgs.lib.maintainers; [ ]; nodes = { node_eutz = { pkgs, ... }: { diff --git a/nixos/tests/tinywl.nix b/nixos/tests/tinywl.nix index 9199866b57af7..2dc354812a75e 100644 --- a/nixos/tests/tinywl.nix +++ b/nixos/tests/tinywl.nix @@ -16,7 +16,7 @@ import ./make-test-python.nix ({ pkgs, lib, ... }: systemPackages = with pkgs; [ tinywl foot wayland-utils ]; }; - hardware.opengl.enable = true; + hardware.graphics.enable = true; # Automatically start TinyWL when logging in on tty1: programs.bash.loginShellInit = '' diff --git a/nixos/tests/wstunnel.nix b/nixos/tests/wstunnel.nix new file mode 100644 index 0000000000000..3bbc295568fb7 --- /dev/null +++ b/nixos/tests/wstunnel.nix @@ -0,0 +1,96 @@ +let + certs = import ./common/acme/server/snakeoil-certs.nix; + domain = certs.domain; +in + +{ + name = "wstunnel"; + + nodes = { + server = { + virtualisation.vlans = [ 1 ]; + + security.pki.certificateFiles = [ certs.ca.cert ]; + + networking = { + useNetworkd = true; + useDHCP = false; + firewall.enable = false; + }; + + systemd.network.networks."01-eth1" = { + name = "eth1"; + networkConfig.Address = "10.0.0.1/24"; + }; + + services.wstunnel = { + enable = true; + servers.my-server = { + listen = { + host = "10.0.0.1"; + port = 443; + }; + tlsCertificate = certs.${domain}.cert; + tlsKey = certs.${domain}.key; + }; + }; + }; + + client = { + virtualisation.vlans = [ 1 ]; + + security.pki.certificateFiles = [ certs.ca.cert ]; + + networking = { + useNetworkd = true; + useDHCP = false; + firewall.enable = false; + extraHosts = '' + 10.0.0.1 ${domain} + ''; + }; + + systemd.network.networks."01-eth1" = { + name = "eth1"; + networkConfig.Address = "10.0.0.2/24"; + }; + + services.wstunnel = { + enable = true; + clients.my-client = { + autoStart = false; + connectTo = "wss://${domain}:443"; + localToRemote = [ + "tcp://8080:localhost:2080" + ]; + remoteToLocal = [ + "tcp://2081:localhost:8081" + ]; + }; + }; + }; + }; + + testScript = /* python */ '' + start_all() + server.wait_for_unit("wstunnel-server-my-server.service") + client.wait_for_open_port(443, "10.0.0.1") + + client.systemctl("start wstunnel-client-my-client.service") + client.wait_for_unit("wstunnel-client-my-client.service") + + with subtest("connection from client to server"): + server.succeed("nc -l 2080 >/tmp/msg &") + client.sleep(1) + client.succeed('nc -w1 localhost 8080 <<<"Hello from client"') + server.succeed('grep "Hello from client" /tmp/msg') + + with subtest("connection from server to client"): + client.succeed("nc -l 8081 >/tmp/msg &") + server.sleep(1) + server.succeed('nc -w1 localhost 2081 <<<"Hello from server"') + client.succeed('grep "Hello from server" /tmp/msg') + + client.systemctl("stop wstunnel-client-my-client.service") + ''; +} diff --git a/pkgs/applications/audio/audacity/default.nix b/pkgs/applications/audio/audacity/default.nix index 365ea7d9c9eb0..802fccf29cc18 100644 --- a/pkgs/applications/audio/audacity/default.nix +++ b/pkgs/applications/audio/audacity/default.nix @@ -202,7 +202,7 @@ stdenv.mkDerivation rec { # Documentation. cc-by-30 ]; - maintainers = with maintainers; [ lheckemann veprbl wegank ]; + maintainers = with maintainers; [ veprbl wegank ]; platforms = platforms.unix; }; } diff --git a/pkgs/applications/audio/cmus/default.nix b/pkgs/applications/audio/cmus/default.nix index 7448e562ffa60..db32f8548517b 100644 --- a/pkgs/applications/audio/cmus/default.nix +++ b/pkgs/applications/audio/cmus/default.nix @@ -8,12 +8,12 @@ , samplerateSupport ? jackSupport, libsamplerate ? null , ossSupport ? false, alsa-oss ? null , pulseaudioSupport ? config.pulseaudio or false, libpulseaudio ? null +, sndioSupport ? false, sndio ? null , mprisSupport ? stdenv.isLinux, systemd ? null # TODO: add these #, artsSupport #, roarSupport -#, sndioSupport #, sunSupport #, waveoutSupport @@ -59,11 +59,11 @@ let (mkFlag samplerateSupport "CONFIG_SAMPLERATE=y" libsamplerate) (mkFlag ossSupport "CONFIG_OSS=y" alsa-oss) (mkFlag pulseaudioSupport "CONFIG_PULSE=y" libpulseaudio) + (mkFlag sndioSupport "CONFIG_SNDIO=y" sndio) (mkFlag mprisSupport "CONFIG_MPRIS=y" systemd) #(mkFlag artsSupport "CONFIG_ARTS=y") #(mkFlag roarSupport "CONFIG_ROAR=y") - #(mkFlag sndioSupport "CONFIG_SNDIO=y") #(mkFlag sunSupport "CONFIG_SUN=y") #(mkFlag waveoutSupport "CONFIG_WAVEOUT=y") @@ -92,13 +92,13 @@ in stdenv.mkDerivation rec { pname = "cmus"; - version = "2.10.0-unstable-2023-11-05"; + version = "2.11.0"; src = fetchFromGitHub { owner = "cmus"; repo = "cmus"; - rev = "23afab39902d3d97c47697196b07581305337529"; - sha256 = "sha256-pxDIYbeJMoaAuErCghWJpDSh1WbYbhgJ7+ca5WLCrOs="; + rev = "v${version}"; + hash = "sha256-kUJC+ORLkYD57mPL/1p5VCm9yiNzVdOZhxp7sVP6oMw="; }; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/applications/audio/easytag/default.nix b/pkgs/applications/audio/easytag/default.nix index 55a4c474a2967..35ba2666f0b6b 100644 --- a/pkgs/applications/audio/easytag/default.nix +++ b/pkgs/applications/audio/easytag/default.nix @@ -34,7 +34,7 @@ stdenv.mkDerivation rec { # https://gitlab.gnome.org/GNOME/easytag/-/merge_requests/8 # Borrowed from Gentoo (fetchpatch { - url = "https://gitweb.gentoo.org/repo/gentoo.git/plain/media-sound/easytag/files/easytag-2.4.3-ogg-corruption.patch"; + url = "https://gitweb.gentoo.org/repo/gentoo.git/plain/media-sound/easytag/files/easytag-2.4.3-ogg-corruption.patch?id=b175a159c1138702bdfb009ff4d6565019ed3c4a"; hash = "sha256-z75dYTEVp1raSFROjpakLeBjF96sgWBxxRB6ut9wYXw="; }) ]; diff --git a/pkgs/applications/audio/exaile/default.nix b/pkgs/applications/audio/exaile/default.nix index 036bcc70ddd0e..4f49564898a9a 100644 --- a/pkgs/applications/audio/exaile/default.nix +++ b/pkgs/applications/audio/exaile/default.nix @@ -51,7 +51,7 @@ stdenv.mkDerivation rec { gst-plugins-ugly gst-libav ]) ++ (with python3.pkgs; [ - bsddb3 + berkeleydb dbus-python mutagen pygobject3 diff --git a/pkgs/applications/audio/giada/default.nix b/pkgs/applications/audio/giada/default.nix index 2693c31846d4e..2880bce40f8bc 100644 --- a/pkgs/applications/audio/giada/default.nix +++ b/pkgs/applications/audio/giada/default.nix @@ -21,15 +21,15 @@ , nlohmann_json }: -stdenv.mkDerivation rec { +stdenv.mkDerivation (finalAttrs: { pname = "giada"; version = "1.0.0"; src = fetchFromGitHub { owner = "monocasual"; - repo = pname; - rev = version; - sha256 = "sha256-vTOUS9mI4B3yRNnM2dNCH7jgMuD3ztdhe1FMgXUIt58="; + repo = "giada"; + rev = finalAttrs.version; + hash = "sha256-vTOUS9mI4B3yRNnM2dNCH7jgMuD3ztdhe1FMgXUIt58="; fetchSubmodules = true; }; @@ -66,12 +66,12 @@ stdenv.mkDerivation rec { libXrandr ]; - meta = with lib; { + meta = { description = "Free, minimal, hardcore audio tool for DJs, live performers and electronic musicians"; mainProgram = "giada"; homepage = "https://giadamusic.com/"; - license = licenses.gpl3; - maintainers = with maintainers; [ kashw2 ]; - platforms = platforms.all; + license = lib.licenses.gpl3; + maintainers = with lib.maintainers; [ kashw2 ]; + platforms = lib.platforms.all; }; -} +}) diff --git a/pkgs/applications/audio/gnome-podcasts/default.nix b/pkgs/applications/audio/gnome-podcasts/default.nix index 55ffb370d60aa..f5e53a1c7c66a 100644 --- a/pkgs/applications/audio/gnome-podcasts/default.nix +++ b/pkgs/applications/audio/gnome-podcasts/default.nix @@ -15,6 +15,7 @@ , desktop-file-utils , dbus , openssl +, glib-networking , sqlite , gst_all_1 , wrapGAppsHook4 @@ -22,19 +23,19 @@ stdenv.mkDerivation rec { pname = "gnome-podcasts"; - version = "0.6.1"; + version = "0.7.1"; src = fetchFromGitLab { domain = "gitlab.gnome.org"; owner = "World"; repo = "podcasts"; rev = version; - hash = "sha256-LPwCYgAFgUMFQZ0i4ldiuGYGMMWcMqYct3/o7eTIhmU="; + hash = "sha256-KCjHT/4AeJ+RXCtawkhs6f4D8NCJotYIPk3tGr5YG9M="; }; cargoDeps = rustPlatform.fetchCargoTarball { inherit pname version src; - hash = "sha256-n3ZcUhqn1rvvgkBKSKvH0b8wbOCqcBGwpb2OqMe8h0s="; + hash = "sha256-XTfKqKs7874ak7Lzscxw8E2qcnJOWMZaaol8TpIB6Vw="; }; nativeBuildInputs = [ @@ -56,6 +57,7 @@ stdenv.mkDerivation rec { gettext dbus openssl + glib-networking sqlite gst_all_1.gstreamer gst_all_1.gst-plugins-base @@ -66,13 +68,13 @@ stdenv.mkDerivation rec { # tests require network doCheck = false; - meta = with lib; { + meta = { description = "Listen to your favorite podcasts"; mainProgram = "gnome-podcasts"; homepage = "https://apps.gnome.org/Podcasts/"; - license = licenses.gpl3Plus; - maintainers = teams.gnome.members; - platforms = platforms.unix; + license = lib.licenses.gpl3Plus; + maintainers = lib.teams.gnome.members; + platforms = lib.platforms.unix; broken = stdenv.isDarwin; # never built on Hydra https://hydra.nixos.org/job/nixpkgs/trunk/gnome-podcasts.x86_64-darwin }; } diff --git a/pkgs/applications/audio/go-musicfox/default.nix b/pkgs/applications/audio/go-musicfox/default.nix index 613756ffaeebb..243fa8fa1a2a1 100644 --- a/pkgs/applications/audio/go-musicfox/default.nix +++ b/pkgs/applications/audio/go-musicfox/default.nix @@ -10,18 +10,18 @@ buildGoModule rec { pname = "go-musicfox"; - version = "4.4.1"; + version = "4.5.3"; src = fetchFromGitHub { owner = "go-musicfox"; repo = "go-musicfox"; rev = "v${version}"; - hash = "sha256-pIfQ0ufn8W0opm+N6IPFBPWNxNWMOU7FudPtIFop51c="; + hash = "sha256-qf4XAAfWWlHAnNGhXaYpnjj+2z+/lWOHaTyv8R4UDgQ="; }; deleteVendor = true; - vendorHash = "sha256-ey78zeCSEuRgteG5ZRb4uO88E6lwEgqSxKfjJg3NGT4="; + vendorHash = "sha256-oz/kVp/Jj2Lmo19UFOn2VPD/iWbSRCbmKy8fK8RdkYs="; subPackages = [ "cmd/musicfox.go" ]; diff --git a/pkgs/applications/audio/pmidi/default.nix b/pkgs/applications/audio/pmidi/default.nix index d8c33351a8dd1..29215aa061952 100644 --- a/pkgs/applications/audio/pmidi/default.nix +++ b/pkgs/applications/audio/pmidi/default.nix @@ -16,7 +16,7 @@ stdenv.mkDerivation { meta = with lib; { homepage = "https://www.parabola.me.uk/alsa/pmidi.html"; description = "Straightforward command line program to play midi files through the ALSA sequencer"; - maintainers = with maintainers; [ lheckemann ]; + maintainers = with maintainers; [ ]; license = licenses.gpl2; mainProgram = "pmidi"; }; diff --git a/pkgs/applications/audio/pocket-casts/default.nix b/pkgs/applications/audio/pocket-casts/default.nix index e07904b32485c..8777f0bb54028 100644 --- a/pkgs/applications/audio/pocket-casts/default.nix +++ b/pkgs/applications/audio/pocket-casts/default.nix @@ -52,7 +52,7 @@ buildNpmPackage rec { description = "Pocket Casts webapp, packaged for the Linux Desktop"; homepage = "https://github.com/felicianotech/pocket-casts-desktop-app"; license = licenses.mit; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; mainProgram = "pocket-casts"; platforms = platforms.linux; }; diff --git a/pkgs/applications/audio/spotify-qt/default.nix b/pkgs/applications/audio/spotify-qt/default.nix index d5947d145172b..0fbf7c9438427 100644 --- a/pkgs/applications/audio/spotify-qt/default.nix +++ b/pkgs/applications/audio/spotify-qt/default.nix @@ -1,4 +1,5 @@ -{ fetchFromGitHub +{ stdenvNoCC +, fetchFromGitHub , lib , cmake , mkDerivation @@ -26,12 +27,18 @@ mkDerivation rec { installFlags = [ "DESTDIR=$(out)" ]; + postInstall = lib.optionalString stdenvNoCC.isDarwin '' + mkdir -p $out/Applications + mv $out/bin/spotify-qt.app $out/Applications + ln $out/Applications/spotify-qt.app/Contents/MacOS/spotify-qt $out/bin/spotify-qt + ''; + meta = with lib; { description = "Lightweight unofficial Spotify client using Qt"; mainProgram = "spotify-qt"; homepage = "https://github.com/kraxarn/spotify-qt"; license = licenses.gpl3Only; - maintainers = with maintainers; [ ]; + maintainers = with maintainers; [ iivusly ]; platforms = platforms.unix; }; } diff --git a/pkgs/applications/audio/tenacity/default.nix b/pkgs/applications/audio/tenacity/default.nix index f44a3f5da2e2b..c5606677fd45c 100644 --- a/pkgs/applications/audio/tenacity/default.nix +++ b/pkgs/applications/audio/tenacity/default.nix @@ -152,7 +152,7 @@ stdenv.mkDerivation rec { mainProgram = "tenacity"; homepage = "https://tenacityaudio.org/"; license = licenses.gpl2Plus; - maintainers = with maintainers; [ irenes lheckemann ]; + maintainers = with maintainers; [ irenes ]; platforms = platforms.linux; }; } diff --git a/pkgs/applications/audio/waylyrics/default.nix b/pkgs/applications/audio/waylyrics/default.nix index 15cec6faa8a7d..69069f01243c3 100644 --- a/pkgs/applications/audio/waylyrics/default.nix +++ b/pkgs/applications/audio/waylyrics/default.nix @@ -9,16 +9,16 @@ rustPlatform.buildRustPackage rec { pname = "waylyrics"; - version = "0.3.11"; + version = "0.3.12"; src = fetchFromGitHub { owner = "waylyrics"; repo = "waylyrics"; rev = "v${version}"; - hash = "sha256-8jmB6kJUNHTT0w/1ADgjoMAP1zNpohsPl9FIGoh8UG4="; + hash = "sha256-FfrgeUDKiM9m0mvKlu02KEuvsq+3Gv3yPFW1DIQw05I="; }; - cargoHash = "sha256-hH9EQAH1uSD6uRUxKv7O3ewZsijrbCSWWY7EmC0Z7tI="; + cargoHash = "sha256-xD46aKT18Kl+81Pfv+zleUUKhSV1Px7JFjhXw1/4cBA="; nativeBuildInputs = [ pkg-config wrapGAppsHook4 ]; buildInputs = [ openssl dbus ]; diff --git a/pkgs/applications/blockchains/bisq-desktop/default.nix b/pkgs/applications/blockchains/bisq-desktop/default.nix index 5e3d54c305960..26b2cb94e1aaa 100644 --- a/pkgs/applications/blockchains/bisq-desktop/default.nix +++ b/pkgs/applications/blockchains/bisq-desktop/default.nix @@ -38,11 +38,11 @@ let in stdenv.mkDerivation rec { pname = "bisq-desktop"; - version = "1.9.15"; + version = "1.9.16"; src = fetchurl { url = "https://github.com/bisq-network/bisq/releases/download/v${version}/Bisq-64bit-${version}.deb"; - sha256 = "0bz4yzfrzn9rwsmwwnsqdgxsqd42dyiz3vxi53qxj36h49nh8lzg"; + sha256 = "sha256-DxYgZgDa3vOHj7svJqu/pdyXKZ+uBTy35Fchw49xxoA="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/blockchains/dcrwallet/default.nix b/pkgs/applications/blockchains/dcrwallet/default.nix index ee195b0e6aacf..07dc5b24bc987 100644 --- a/pkgs/applications/blockchains/dcrwallet/default.nix +++ b/pkgs/applications/blockchains/dcrwallet/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "dcrwallet"; - version = "2.0.2"; + version = "2.0.3"; src = fetchFromGitHub { owner = "decred"; repo = "dcrwallet"; rev = "release-v${version}"; - hash = "sha256-fsmil9YQNvXDyBxyt+Ei3F5U/dvbrzbZ01+v9o3+jVY="; + hash = "sha256-sRwGpOVydfZjgo7W+4RsHC4JElPyilbV5xhcHxPh2Wc="; }; - vendorHash = "sha256-ehtgsBCFzMft8285IjpsQ6y9HPb/UpZmcj9X4m8ZKXo="; + vendorHash = "sha256-lVVIS3FL8XwthCpzRKdw59NVtHVxXQ0ouD7jYQzOecM="; subPackages = [ "." ]; diff --git a/pkgs/applications/display-managers/lightdm-slick-greeter/default.nix b/pkgs/applications/display-managers/lightdm-slick-greeter/default.nix index 655552df3249a..d7054e6f4080a 100644 --- a/pkgs/applications/display-managers/lightdm-slick-greeter/default.nix +++ b/pkgs/applications/display-managers/lightdm-slick-greeter/default.nix @@ -22,13 +22,13 @@ stdenv.mkDerivation rec { pname = "lightdm-slick-greeter"; - version = "2.0.4"; + version = "2.0.5"; src = fetchFromGitHub { owner = "linuxmint"; repo = "slick-greeter"; rev = version; - sha256 = "sha256-1UOODak5YkoMLdIkN1rBIrlr3Zjj5SS2yx90vmF1prA="; + sha256 = "sha256-Q37CprukHvDRBcuPbfusKg2DY+JCwmjVX1+KnfSH2iw="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/editors/jetbrains/bin/linux.nix b/pkgs/applications/editors/jetbrains/bin/linux.nix index ca70c4e4cec57..1effb9def0079 100644 --- a/pkgs/applications/editors/jetbrains/bin/linux.nix +++ b/pkgs/applications/editors/jetbrains/bin/linux.nix @@ -110,7 +110,7 @@ with stdenv; lib.makeOverridable mkDerivation (rec { --set-default JDK_HOME "$jdk" \ --set-default ANDROID_JAVA_HOME "$jdk" \ --set-default JAVA_HOME "$jdk" \ - --set-default JETBRAINSCLIENT_JDK "$jdk" \ + --set-default JETBRAINS_CLIENT_JDK "$jdk" \ --set-default ${hiName}_JDK "$jdk" \ --set-default ${hiName}_VM_OPTIONS ${vmoptsFile} diff --git a/pkgs/applications/editors/jetbrains/patches/no-download.patch b/pkgs/applications/editors/jetbrains/patches/no-download.patch index f82d8c04016c1..700425665a917 100644 --- a/pkgs/applications/editors/jetbrains/patches/no-download.patch +++ b/pkgs/applications/editors/jetbrains/patches/no-download.patch @@ -1,27 +1,20 @@ --- a/build/deps/src/org/jetbrains/intellij/build/impl/BundledMavenDownloader.kt +++ b/build/deps/src/org/jetbrains/intellij/build/impl/BundledMavenDownloader.kt -@@ -87,13 +87,13 @@ - } - val targetFile = root.resolve("${split[1]}-${split[2]}.jar") - val uri = BuildDependenciesDownloader.getUriForMavenArtifact( -- mavenRepository = BuildDependenciesConstants.MAVEN_CENTRAL_URL, -+ mavenRepository = "MAVEN_REPO_HERE", - groupId = split[0], - artifactId = split[1], - version = split[2], - packaging = "jar" - ) -- targetFile to downloadFileToCacheLocation(uri.toString(), communityRoot) -+ targetFile to Path.of(uri.toString()) - } +@@ -89,7 +89,7 @@ } - }.asSequence().map { it.getCompleted() }.toMap() -@@ -133,21 +133,6 @@ + val file = root.resolve("${split[1]}-${split[2]}.jar") + val uri = BuildDependenciesDownloader.getUriForMavenArtifact( +- mavenRepository = BuildDependenciesConstants.MAVEN_CENTRAL_URL, ++ mavenRepository = "MAVEN_REPO_HERE", + groupId = split[0], + artifactId = split[1], + version = split[2], +@@ -145,22 +145,7 @@ } - + suspend fun downloadMavenDistribution(communityRoot: BuildDependenciesCommunityRoot): Path { - val extractDir = communityRoot.communityRoot.resolve("plugins/maven/maven36-server-impl/lib/maven3") -- val properties = BuildDependenciesDownloader.getDependenciesProperties(communityRoot) +- val properties = BuildDependenciesDownloader.getDependencyProperties(communityRoot) - val bundledMavenVersion = properties.property("bundledMavenVersion") - mutex.withLock { - val uri = BuildDependenciesDownloader.getUriForMavenArtifact( @@ -38,7 +31,8 @@ - return extractDir + return Path.of("MAVEN_PATH_HERE") } - } + + suspend fun downloadMavenTelemetryDependencies(communityRoot: BuildDependenciesCommunityRoot): Path = --- a/platform/build-scripts/downloader/src/org/jetbrains/intellij/build/dependencies/BuildDependenciesDownloader.kt +++ b/platform/build-scripts/downloader/src/org/jetbrains/intellij/build/dependencies/BuildDependenciesDownloader.kt @@ -70,7 +70,7 @@ @@ -52,19 +46,19 @@ return URI.create("${base}/${groupStr}/${artifactId}/${version}/${artifactId}-${version}${classifierStr}.${packaging}") --- a/platform/build-scripts/downloader/src/org/jetbrains/intellij/build/dependencies/JdkDownloader.kt +++ b/platform/build-scripts/downloader/src/org/jetbrains/intellij/build/dependencies/JdkDownloader.kt -@@ -25,11 +25,7 @@ +@@ -33,11 +33,7 @@ } - - fun getJdkHome(communityRoot: BuildDependenciesCommunityRoot, os: OS, arch: Arch, infoLog: (String) -> Unit): Path { -- val jdkUrl = getUrl(communityRoot, os, arch) -- val jdkArchive = BuildDependenciesDownloader.downloadFileToCacheLocation(communityRoot, jdkUrl) -- val jdkExtracted = BuildDependenciesDownloader.extractFileToCacheLocation( -- communityRoot, jdkArchive, BuildDependenciesExtractOptions.STRIP_ROOT) -- infoLog("jps-bootstrap JDK is at $jdkExtracted") + + suspend fun getJdkHome(communityRoot: BuildDependenciesCommunityRoot, os: OS, arch: Arch, infoLog: (String) -> Unit): Path { +- val jdkUrl = getUrl(communityRoot = communityRoot, os = os, arch = arch) +- val jdkArchive = downloadFileToCacheLocation(url = jdkUrl.toString(), communityRoot = communityRoot) +- val jdkExtracted = BuildDependenciesDownloader.extractFileToCacheLocation(communityRoot = communityRoot, +- archiveFile = jdkArchive, +- BuildDependenciesExtractOptions.STRIP_ROOT) + val jdkExtracted = Path.of("JDK_PATH_HERE") - - val jdkHome: Path = if (os == OS.MACOSX) { - jdkExtracted.resolve("Contents").resolve("Home") + val jdkHome = if (os == OS.MACOSX) jdkExtracted.resolve("Contents").resolve("Home") else jdkExtracted + infoLog("JPS-bootstrap JDK (jdkHome=$jdkHome, executable=${getJavaExecutable(jdkHome)})") + return jdkHome --- a/platform/build-scripts/src/org/jetbrains/intellij/build/LinuxDistributionCustomizer.kt +++ b/platform/build-scripts/src/org/jetbrains/intellij/build/LinuxDistributionCustomizer.kt @@ -46,7 +46,7 @@ @@ -98,23 +92,24 @@ val tarGzPath = buildTarGz(arch = arch, runtimeDir = runtimeDir, unixDistPath = osAndArchSpecificDistPath, suffix = suffix(arch)) --- a/platform/build-scripts/src/org/jetbrains/intellij/build/impl/brokenPlugins.kt +++ b/platform/build-scripts/src/org/jetbrains/intellij/build/impl/brokenPlugins.kt -@@ -11,6 +11,7 @@ - import java.nio.file.Files - import java.nio.file.Path +@@ -9,6 +9,8 @@ + import java.io.ByteArrayOutputStream + import java.io.DataOutputStream import java.util.* ++import java.nio.file.Path +import kotlin.io.path.readText - + private const val MARKETPLACE_BROKEN_PLUGINS_URL = "https://plugins.jetbrains.com/files/brokenPlugins.json" - -@@ -22,7 +23,7 @@ - + +@@ -19,7 +21,7 @@ + val span = Span.current() + val allBrokenPlugins = try { - val jsonFormat = Json { ignoreUnknownKeys = true } - val content = downloadAsText(MARKETPLACE_BROKEN_PLUGINS_URL) + val content = Path.of("BROKEN_PLUGINS_HERE").readText() - jsonFormat.decodeFromString(ListSerializer(MarketplaceBrokenPlugin.serializer()), content) + @Suppress("JSON_FORMAT_REDUNDANT") + Json { ignoreUnknownKeys = true }.decodeFromString(ListSerializer(MarketplaceBrokenPlugin.serializer()), content) } - catch (e: Exception) { --- a/platform/build-scripts/src/org/jetbrains/intellij/build/kotlin/KotlinCompilerDependencyDownloader.kt +++ b/platform/build-scripts/src/org/jetbrains/intellij/build/kotlin/KotlinCompilerDependencyDownloader.kt @@ -23,31 +23,11 @@ @@ -151,3 +146,17 @@ } fun getKotlinJpsPluginVersion(communityRoot: BuildDependenciesCommunityRoot): String { +--- a/platform/build-scripts/downloader/src/ktor.kt ++++ b/platform/build-scripts/downloader/src/ktor.kt +@@ -221,6 +221,11 @@ + val lock = fileLocks.getLock(targetPath.hashCode()) + lock.lock() + try { ++ if (url.startsWith("/")) { ++ var sourceUrl = Path.of(url) ++ Files.copy(sourceUrl, target) ++ } ++ + if (Files.exists(target)) { + Span.current().addEvent("use asset from cache", Attributes.of( + AttributeKey.stringKey("url"), url, diff --git a/pkgs/applications/editors/jetbrains/patches/restarter-no-static-crt-override.patch b/pkgs/applications/editors/jetbrains/patches/restarter-no-static-crt-override.patch deleted file mode 100644 index cbc0405eee82a..0000000000000 --- a/pkgs/applications/editors/jetbrains/patches/restarter-no-static-crt-override.patch +++ /dev/null @@ -1,9 +0,0 @@ ---- a/.cargo/config.toml -+++ b/.cargo/config.toml -@@ -3,6 +3,3 @@ - - [target.'cfg(all(target_os = "macos", target_arch = "x86_64"))'] - rustflags = ["-C", "link-arg=-mmacosx-version-min=10.15"] -- --[target.'cfg(all(target_os = "linux", target_arch = "x86_64"))'] --rustflags = ["-C", "target-feature=+crt-static"] diff --git a/pkgs/applications/editors/jetbrains/source/brokenPlugins.json b/pkgs/applications/editors/jetbrains/source/brokenPlugins.json index 4e4a0d35dd2b8..90bc95e8a5d83 100644 --- a/pkgs/applications/editors/jetbrains/source/brokenPlugins.json +++ b/pkgs/applications/editors/jetbrains/source/brokenPlugins.json @@ -1 +1 @@ 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\ No newline at end of file diff --git a/pkgs/applications/editors/jetbrains/source/build.nix b/pkgs/applications/editors/jetbrains/source/build.nix index 9b71f73ecf12d..b5dbb28559c8f 100644 --- a/pkgs/applications/editors/jetbrains/source/build.nix +++ b/pkgs/applications/editors/jetbrains/source/build.nix @@ -30,7 +30,7 @@ let - jbr = jetbrains.jdk-no-jcef; + jbr = jetbrains.jdk-no-jcef-17; ideaSrc = fetchFromGitHub { owner = "jetbrains"; @@ -115,7 +115,6 @@ let pname = "restarter"; version = buildVer; inherit src; - patches = [ ../patches/restarter-no-static-crt-override.patch ]; sourceRoot = "source/native/restarter"; cargoHash = restarterHash; }; @@ -188,11 +187,11 @@ let repoUrl = "https://cache-redirector.jetbrains.com/maven.pkg.jetbrains.space/kotlin/p/kotlin/kotlin-ide-plugin-dependencies"; groupId = builtins.replaceStrings [ "." ] [ "/" ] "org.jetbrains.kotlin"; artefactId = "kotlin-jps-plugin-classpath"; - version = "1.9.10"; + version = "1.9.22"; in fetchurl { url = repoUrl + "/" + groupId + "/" + artefactId + "/" + version + "/" + artefactId + "-" + version + ".jar"; - hash = "sha256-gpB4lg6wailtxSgPyyOrarXCL9+DszojaYGC4ULgU3c="; + hash = "sha256-ZPfEceGoIChDmjIAjjhDZpyMWQ7/DtP9Ll4YIrZN+PM="; }; targetClass = if buildType == "pycharm" then "intellij.pycharm.community.build" else "intellij.idea.community.build"; @@ -231,7 +230,7 @@ stdenvNoCC.mkDerivation rec { -e 's|MAVEN_REPO_HERE|${mvnRepo}/.m2/repository/|' \ -e 's|MAVEN_PATH_HERE|${maven}/maven|' \ -i build/deps/src/org/jetbrains/intellij/build/impl/BundledMavenDownloader.kt - echo '${buildVer}' > build.txt + echo '${buildVer}.SNAPSHOT' > build.txt ''; configurePhase = '' diff --git a/pkgs/applications/editors/jetbrains/source/default.nix b/pkgs/applications/editors/jetbrains/source/default.nix index 36cdc5bd836ab..53a64bdfbd954 100644 --- a/pkgs/applications/editors/jetbrains/source/default.nix +++ b/pkgs/applications/editors/jetbrains/source/default.nix @@ -3,21 +3,21 @@ { idea-community = callPackage ./build.nix { - buildVer = "233.13135.103"; + buildVer = "241.17890.1"; buildType = "idea"; - ideaHash = "sha256-ld6qvc0ceERrLSJOC07JEgDmg3lEYdU/XgjZXgzWTAg="; - androidHash = "sha256-D8zKkmPOx4RliAtyq2Z8Up2u224blP0SjNjW3yO7nSQ="; - jpsHash = "sha256-0cmn0N1UVNzw1hNOpy+9HhkHHNq+rVKnfXM+LjHAQ40="; - restarterHash = "sha256-56GqBY/w8expWTXSP3Bad9u7QV3q8LpNN8nd8tk+Zzk="; + ideaHash = "sha256-jWFnewxRkriSmV6CgGX1r//uaErMINfx3Z+JpkE34jk="; + androidHash = "sha256-hX2YdRYNRg0guskNiYfxdl9osgZojRen82IhgA6G0Eo="; + jpsHash = "sha256-Abr7L1FyqzRoUSDtsJs3cTEdkhORY5DzsQnOo5irVRI="; + restarterHash = "sha256-XdjyuJUQMvhC0fl6sMj0sRWlqgUb3ZgBmKKXcD3egkk="; mvnDeps = ./idea_maven_artefacts.json; }; pycharm-community = callPackage ./build.nix { - buildVer = "233.13135.95"; + buildVer = "241.17890.14"; buildType = "pycharm"; - ideaHash = "sha256-avRdwIr+uSXZhcMeamfy7OMYy0Ez7qWljwPc5V6n/60="; - androidHash = "sha256-D8zKkmPOx4RliAtyq2Z8Up2u224blP0SjNjW3yO7nSQ="; - jpsHash = "sha256-0cmn0N1UVNzw1hNOpy+9HhkHHNq+rVKnfXM+LjHAQ40="; - restarterHash = "sha256-YW+5Jl0EWqBj7iRkk70NFL+gccK9/tAOlm/n08XKH8M="; + ideaHash = "sha256-tTB91/RHEWP/ZILPNFAbolVBLvgjLXTdD/uF/pdJ22Y="; + androidHash = "sha256-hX2YdRYNRg0guskNiYfxdl9osgZojRen82IhgA6G0Eo="; + jpsHash = "sha256-Abr7L1FyqzRoUSDtsJs3cTEdkhORY5DzsQnOo5irVRI="; + restarterHash = "sha256-TbTIz9pc5wqL54TAMRoQ/9Ax/qsDp+r+h5jn2ub0hes="; mvnDeps = ./idea_maven_artefacts.json; }; } diff --git a/pkgs/applications/editors/jetbrains/source/idea_maven_artefacts.json b/pkgs/applications/editors/jetbrains/source/idea_maven_artefacts.json index cbba57435ebe2..72ef07816035b 100644 --- a/pkgs/applications/editors/jetbrains/source/idea_maven_artefacts.json +++ b/pkgs/applications/editors/jetbrains/source/idea_maven_artefacts.json @@ -10,34 +10,19 @@ "path": "cglib/cglib-nodep/3.3.0/cglib-nodep-3.3.0.jar" }, { - "url": "org/jetbrains/intellij/deps/gradle-api/8.4/gradle-api-8.4.jar", - "hash": 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"software/amazon/ion/ion-java/1.0.2/ion-java-1.0.2.jar", - "hash": "0d127b205a1fce0abc2a3757a041748651bc66c15cf4c059bac5833b27d471a5", - "path": "software/amazon/ion/ion-java/1.0.2/ion-java-1.0.2.jar" - }, - { "url": "com/amazonaws/jmespath-java/1.12.431/jmespath-java-1.12.431.jar", "hash": "238630e244b369b57238bb35e9a23382be65771b04a0f36d85df07b61b4ae2b9", "path": "com/amazonaws/jmespath-java/1.12.431/jmespath-java-1.12.431.jar" @@ -2890,14 +2655,14 @@ "path": "com/auth0/java-jwt/4.3.0/java-jwt-4.3.0.jar" }, { - "url": "org/jetbrains/intellij/plugins/structure-intellij/3.247/structure-intellij-3.247.jar", - "hash": "92bf25de8508be9d8dc84f65fd1b08c348a3f54a726fae389f0a92797e8816ce", - "path": "org/jetbrains/intellij/plugins/structure-intellij/3.247/structure-intellij-3.247.jar" + "url": "org/jetbrains/intellij/plugins/structure-intellij/3.262/structure-intellij-3.262.jar", + "hash": "d71b06f876f58c014227ddb68e1ff38e2267cf540acb3f6cc0e6a647b417bf20", + "path": 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"c115b9b1c197db5d1d563207692980309c4eaa7ef0b6ea0e0ad2037fb8a270f0", - "path": "org/jetbrains/intellij/deps/android/tools/base/studio.android.sdktools.adblib.ddmlibcompatibility/231.0.1.4/studio.android.sdktools.adblib.ddmlibcompatibility-231.0.1.4.jar" + "path": "org/jetbrains/intellij/deps/android/tools/base/studio.android.sdktools.adblib.ddmlibcompatibility/231.0.26.0/studio.android.sdktools.adblib.ddmlibcompatibility-231.0.26.0.jar" }, { - "url": "org/jetbrains/intellij/deps/android/tools/base/studio.android.sdktools.adblib.ddmlibcompatibility_test/231.0.1.4/studio.android.sdktools.adblib.ddmlibcompatibility_test-231.0.1.4.jar", + "url": "org/jetbrains/intellij/deps/android/tools/base/studio.android.sdktools.adblib.ddmlibcompatibility_test/231.0.26.0/studio.android.sdktools.adblib.ddmlibcompatibility_test-231.0.26.0.jar", "hash": "1e46e3749659bca70a030530956ee7186c8d6ad8c8cf324b487f2b252cd5ca8b", - "path": "org/jetbrains/intellij/deps/android/tools/base/studio.android.sdktools.adblib.ddmlibcompatibility_test/231.0.1.4/studio.android.sdktools.adblib.ddmlibcompatibility_test-231.0.1.4.jar" + "path": "org/jetbrains/intellij/deps/android/tools/base/studio.android.sdktools.adblib.ddmlibcompatibility_test/231.0.26.0/studio.android.sdktools.adblib.ddmlibcompatibility_test-231.0.26.0.jar" }, { - "url": "org/jetbrains/intellij/deps/android/tools/base/studio.android.sdktools.adblib/231.0.1.4/studio.android.sdktools.adblib-231.0.1.4.jar", + "url": "org/jetbrains/intellij/deps/android/tools/base/studio.android.sdktools.adblib/231.0.26.0/studio.android.sdktools.adblib-231.0.26.0.jar", "hash": "fe915843096d74ea40330ea7699f94c48421e4ff79bba19c950cd50f173bdd83", - "path": "org/jetbrains/intellij/deps/android/tools/base/studio.android.sdktools.adblib/231.0.1.4/studio.android.sdktools.adblib-231.0.1.4.jar" + "path": "org/jetbrains/intellij/deps/android/tools/base/studio.android.sdktools.adblib/231.0.26.0/studio.android.sdktools.adblib-231.0.26.0.jar" }, { - "url": "org/jetbrains/intellij/deps/android/tools/base/studio.android.sdktools.adblib_test/231.0.1.4/studio.android.sdktools.adblib_test-231.0.1.4.jar", + "url": "org/jetbrains/intellij/deps/android/tools/base/studio.android.sdktools.adblib_test/231.0.26.0/studio.android.sdktools.adblib_test-231.0.26.0.jar", "hash": "ddd8f1dc8f4c585075b915675159a849fb20e74dca467d911efe3085fd0aa33b", - "path": "org/jetbrains/intellij/deps/android/tools/base/studio.android.sdktools.adblib_test/231.0.1.4/studio.android.sdktools.adblib_test-231.0.1.4.jar" + "path": "org/jetbrains/intellij/deps/android/tools/base/studio.android.sdktools.adblib_test/231.0.26.0/studio.android.sdktools.adblib_test-231.0.26.0.jar" } ] diff --git a/pkgs/applications/editors/lifeograph/default.nix b/pkgs/applications/editors/lifeograph/default.nix index 52e12beb317aa..0501d25c51c92 100644 --- a/pkgs/applications/editors/lifeograph/default.nix +++ b/pkgs/applications/editors/lifeograph/default.nix @@ -35,7 +35,7 @@ stdenv.mkDerivation rec { homepage = "https://lifeograph.sourceforge.net/wiki/Main_Page"; description = "Lifeograph is an off-line and private journal and note taking application"; license = licenses.gpl3Only; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; mainProgram = "lifeograph"; platforms = platforms.linux; }; diff --git a/pkgs/applications/editors/thiefmd/default.nix b/pkgs/applications/editors/thiefmd/default.nix index d603981302342..59e28a75ad138 100644 --- a/pkgs/applications/editors/thiefmd/default.nix +++ b/pkgs/applications/editors/thiefmd/default.nix @@ -66,6 +66,6 @@ stdenv.mkDerivation rec { mainProgram = "com.github.kmwallio.thiefmd"; license = licenses.gpl3Only; platforms = platforms.linux; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; }; } diff --git a/pkgs/applications/editors/vim/plugins/deprecated.json b/pkgs/applications/editors/vim/plugins/deprecated.json index 64eaf1cb58577..d679dfed6db4c 100644 --- a/pkgs/applications/editors/vim/plugins/deprecated.json +++ b/pkgs/applications/editors/vim/plugins/deprecated.json @@ -12,7 +12,7 @@ "new": "vim-fern" }, "gina-vim": { - "date": "2024-06-11", + "date": "2024-06-19", "new": "vim-gina" }, "gist-vim": { @@ -60,7 +60,7 @@ "new": "vim-suda" }, "vim-fsharp": { - "date": "2024-06-11", + "date": "2024-06-19", "new": "zarchive-vim-fsharp" }, "vim-jade": { diff --git a/pkgs/applications/editors/vim/plugins/generated.nix b/pkgs/applications/editors/vim/plugins/generated.nix index 7507faa4e81ec..29e087d801fe1 100644 --- a/pkgs/applications/editors/vim/plugins/generated.nix +++ b/pkgs/applications/editors/vim/plugins/generated.nix @@ -77,12 +77,12 @@ final: prev: Coqtail = buildVimPlugin { pname = "Coqtail"; - version = "2024-06-02"; + version = "2024-06-15"; src = fetchFromGitHub { owner = "whonore"; repo = "Coqtail"; - rev = "d77080e17787afe9ad0366d86327658da36febbb"; - sha256 = "03qq50mas5dk3aj1rbv1f0x68rfa9b07cacj12sxp76sda9c0prz"; + rev = "a36352930b5e5f8d33dda09eef0c9d7c96190a02"; + sha256 = "07vy515qgfc6f1y96dn0ykm0kh3ylkhf6igb23f4jv608ylz4f12"; }; meta.homepage = "https://github.com/whonore/Coqtail/"; }; @@ -185,24 +185,24 @@ final: prev: LazyVim = buildVimPlugin { pname = "LazyVim"; - version = "2024-06-11"; + version = "2024-06-18"; src = fetchFromGitHub { owner = "LazyVim"; repo = "LazyVim"; - rev = "d1d24fa077add680bc532e08fd68aaa0841a14dc"; - sha256 = "113z6y6fxq5m45x9sbaa4jsxmxxw769wb207x76qvvph6ixdrdks"; + rev = "67eece6d74f071035ca7b934a753d71d1677dd9b"; + sha256 = "15r8n3ch609lifv8lvyis5kn663c6jjj4zkzhyn4v4cxcxj3lb5d"; }; meta.homepage = "https://github.com/LazyVim/LazyVim/"; }; LeaderF = buildVimPlugin { pname = "LeaderF"; - version = "2024-06-06"; + version = "2024-06-19"; src = fetchFromGitHub { owner = "Yggdroot"; repo = "LeaderF"; - rev = "98a0d1af8e901342718bd626e94ae4742fa1a937"; - sha256 = "12zkyr24q56mq626g5g7hxzddvah21zy31vm7b5wpzhmamkdb17b"; + rev = "11c08af2ae56fac83772d21aa5133913784ca2c4"; + sha256 = "1yld7h2s1yr5l65iagk51xx4znf1vh5m7c5c4gmmp5zr2px0bn8b"; }; meta.homepage = "https://github.com/Yggdroot/LeaderF/"; }; @@ -317,12 +317,12 @@ final: prev: SchemaStore-nvim = buildVimPlugin { pname = "SchemaStore.nvim"; - version = "2024-06-11"; + version = "2024-06-15"; src = fetchFromGitHub { owner = "b0o"; repo = "SchemaStore.nvim"; - rev = "493250022db69edd8afe8e6d0f17105756a3b721"; - sha256 = "1zc5rqygmwdnvvpqsgj59nyxykjfwab309wzmpc3y3yqwvanh355"; + rev = "35f36c50b9f1e1e916d0e3f004cb48dffd2bf737"; + sha256 = "0a3488c74hrykcmharzza5svy9c0smw9yzafpdsgw10adav2mxqb"; }; meta.homepage = "https://github.com/b0o/SchemaStore.nvim/"; }; @@ -510,12 +510,12 @@ final: prev: actions-preview-nvim = buildVimPlugin { pname = "actions-preview.nvim"; - version = "2024-06-10"; + version = "2024-06-16"; src = fetchFromGitHub { owner = "aznhe21"; repo = "actions-preview.nvim"; - rev = "d7f490c278982d3c4650b0998772df848df93179"; - sha256 = "1pcs1dzmr4a1q6f9slzpmfi7nm6wdynp32ipy5hnnw4k0wqxz7zd"; + rev = "9f52a01c374318e91337697ebed51c6fae57f8a4"; + sha256 = "0gr3gwmb2mcqphybx1yxsbpdlvvjpchzwich3a9wnz5mrjzyr24m"; }; meta.homepage = "https://github.com/aznhe21/actions-preview.nvim/"; }; @@ -534,12 +534,12 @@ final: prev: aerial-nvim = buildVimPlugin { pname = "aerial.nvim"; - version = "2024-06-02"; + version = "2024-06-17"; src = fetchFromGitHub { owner = "stevearc"; repo = "aerial.nvim"; - rev = "75de06f8edbd0006997a19b760045753d4f6693c"; - sha256 = "1zjp5w8p0x4rrlfvj3a5al6kgk0h0jq5gybz2gcf7d8j2afwamsi"; + rev = "eb25396dae306cef5b8fffbe9ae98283d2f1c199"; + sha256 = "1byzkpcc77a2zwlypgmcmzik816i4qcaydb8ssy0vxrf3nsjx9s4"; fetchSubmodules = true; }; meta.homepage = "https://github.com/stevearc/aerial.nvim/"; @@ -715,12 +715,12 @@ final: prev: astrotheme = buildVimPlugin { pname = "astrotheme"; - version = "2024-05-27"; + version = "2024-06-17"; src = fetchFromGitHub { owner = "AstroNvim"; repo = "astrotheme"; - rev = "2bcd030c93489a02aab6cff2288e49adb0c84fad"; - sha256 = "0gmj86y9lf824yyvck1qfd61a98p9y0rgw1ncpw9ck4s33903r4j"; + rev = "ab0cb19c32181126f92b8239700cec97ba81b0fd"; + sha256 = "187glbn1lysawl4rs9rzvzqwd26yl6kkc72sabx1hs9wn3xl3x0i"; }; meta.homepage = "https://github.com/AstroNvim/astrotheme/"; }; @@ -835,12 +835,12 @@ final: prev: asynctasks-vim = buildVimPlugin { pname = "asynctasks.vim"; - version = "2023-12-11"; + version = "2024-06-18"; src = fetchFromGitHub { owner = "skywind3000"; repo = "asynctasks.vim"; - rev = "851da4282ffb2ce3d5e4c2f70d2d09da7839d48f"; - sha256 = "12xm92dz599w0imd7flpvay4d73hfvj0hrnz90aq6xvfrry8mzpq"; + rev = "2604a6dd7348cff5bbca869ba68170f67b48159a"; + sha256 = "033x1z1jr2s6cv0ff98qjqn62vz82isajbxbb4hbyihhk4d0zka5"; }; meta.homepage = "https://github.com/skywind3000/asynctasks.vim/"; }; @@ -859,12 +859,12 @@ final: prev: aurora = buildVimPlugin { pname = "aurora"; - version = "2024-05-22"; + version = "2024-06-14"; src = fetchFromGitHub { owner = "ray-x"; repo = "aurora"; - rev = "fe84aed4bcf6648381adbe1f81ccf3aec752fa45"; - sha256 = "0knj1xvffmnh6h97jz3ypfhikc89wgfyfwz98qld9z3k2c83k4ln"; + rev = "31fc4eb67afca6d88a98cb9a17c206d72224423e"; + sha256 = "13h8xf5f5ny2rc50z1v1kbrypx9xlbfg2l0pafkg9m05w70kmc93"; }; meta.homepage = "https://github.com/ray-x/aurora/"; }; @@ -1040,12 +1040,12 @@ final: prev: bamboo-nvim = buildVimPlugin { pname = "bamboo.nvim"; - version = "2024-06-08"; + version = "2024-06-18"; src = fetchFromGitHub { owner = "ribru17"; repo = "bamboo.nvim"; - rev = "2fa7eab875bc5cc9e98134f15360aa2d96cdfa65"; - sha256 = "1kzh4az8j7kyrwspdcbr5271ipjaqacxlm8zi8h5ydb4dyjq9jl6"; + rev = "a1b2661f3cb248ae4fafc0cc50ca2588532e231d"; + sha256 = "0f004i98g6jvgnl561bmhzga09gdh1nizk95ahyyg6y5bkqkbrn8"; }; meta.homepage = "https://github.com/ribru17/bamboo.nvim/"; }; @@ -1208,12 +1208,12 @@ final: prev: bluloco-nvim = buildVimPlugin { pname = "bluloco.nvim"; - version = "2024-06-08"; + version = "2024-06-14"; src = fetchFromGitHub { owner = "uloco"; repo = "bluloco.nvim"; - rev = "5e70851f396decd0d28a10655d5235ddf507fd95"; - sha256 = "0al77jp0zjfjqy12vnzv15abykry2yd6pq55r3hwd6njwrv0fsj2"; + rev = "e7586def35c3584f1cc71fecf3e89e53dc4a40c6"; + sha256 = "030n232cbf5fhwddf59fv4jqqwsvbks7a0xksd14sccp8p1d92gc"; }; meta.homepage = "https://github.com/uloco/bluloco.nvim/"; }; @@ -1388,12 +1388,12 @@ final: prev: chadtree = buildVimPlugin { pname = "chadtree"; - version = "2024-06-09"; + version = "2024-06-17"; src = fetchFromGitHub { owner = "ms-jpq"; repo = "chadtree"; - rev = "fa33b2c6bdb06bf772301a17984498819b52bd92"; - sha256 = "05r19g7472fhk97jxjwg53y0drmnliv0hhm739lyabxnbcrc0dq9"; + rev = "156372cb7485a49b02229bd1e3d07fccc5a1c089"; + sha256 = "1yrncyvfqa16vypdh7ay0nb7wzgidd3cxx81bc01jw4h3f1gfrx0"; }; meta.homepage = "https://github.com/ms-jpq/chadtree/"; }; @@ -1436,12 +1436,12 @@ final: prev: cinnamon-nvim = buildVimPlugin { pname = "cinnamon.nvim"; - version = "2024-06-02"; + version = "2024-06-19"; src = fetchFromGitHub { owner = "declancm"; repo = "cinnamon.nvim"; - rev = "e48538cba26f079822329a6d12b8cf2b916e925a"; - sha256 = "1p5xh8xkp554l7d4csf3mpwjbg5jhqwxf76k0d1jbi7qx7jg3dxa"; + rev = "513154670f9e174e0b5dc75dd0662c5da493c284"; + sha256 = "0apnz8qmj0173dw4nnxj3zjr5695f20za599pwlmfrld0nfgaqc2"; }; meta.homepage = "https://github.com/declancm/cinnamon.nvim/"; }; @@ -1532,12 +1532,12 @@ final: prev: cloak-nvim = buildVimPlugin { pname = "cloak.nvim"; - version = "2024-03-23"; + version = "2024-06-12"; src = fetchFromGitHub { owner = "laytan"; repo = "cloak.nvim"; - rev = "6e5bcd50bebc5cdb7cd3a00eb3d97ab7c4cc3b94"; - sha256 = "1bplsykmfg923vrywfw0wi1zjy19lc7impch27kcrawji6g838nv"; + rev = "648aca6d33ec011dc3166e7af3b38820d01a71e4"; + sha256 = "1jfjc65iimzy2phm8w1x6m0f6hrmiy3kc0mq9bm02168xqi0vfjp"; }; meta.homepage = "https://github.com/laytan/cloak.nvim/"; }; @@ -1556,12 +1556,12 @@ final: prev: cmake-tools-nvim = buildVimPlugin { pname = "cmake-tools.nvim"; - version = "2024-06-08"; + version = "2024-06-11"; src = fetchFromGitHub { owner = "Civitasv"; repo = "cmake-tools.nvim"; - rev = "56b448e839ee0aa1ff488b2c1f76971bcab9fe8b"; - sha256 = "0llwf8ckkmbqnypli8pfs0wqjhpr91sc1xpcq4a1mls9wwy8wf03"; + rev = "09bd61415ecdba84f378fe734680f69375260985"; + sha256 = "1ygqn0qwmgq19c46aadrqb7kysmwh5igrdj5jwy79zc6f20zh3b7"; }; meta.homepage = "https://github.com/Civitasv/cmake-tools.nvim/"; }; @@ -1759,12 +1759,12 @@ final: prev: cmp-fish = buildVimPlugin { pname = "cmp-fish"; - version = "2022-09-01"; + version = "2024-06-17"; src = fetchFromGitHub { owner = "mtoohey31"; repo = "cmp-fish"; - rev = "8ae7bfb1b3251d433c4adf4e64396ef929fbd91f"; - sha256 = "02yvzj7n8j20x6hxbgj7jy2ddhfqbccg6bg9hfl2yg67prqmz7p5"; + rev = "3a23492e2aead05522a9887ec685d70e8c987323"; + sha256 = "0sl5spsbdmcky4ccvymd0hi1mh4gd3c770y08jiaaqx92vkmp9qm"; }; meta.homepage = "https://github.com/mtoohey31/cmp-fish/"; }; @@ -2287,12 +2287,12 @@ final: prev: codeium-vim = buildVimPlugin { pname = "codeium.vim"; - version = "2024-06-05"; + version = "2024-06-19"; src = fetchFromGitHub { owner = "Exafunction"; repo = "codeium.vim"; - rev = "decfb541c9fd176f467991dcde8923c7db362e02"; - sha256 = "1dk7bzcrf6sxl6rp3npndr63h3hbmyhqdnyg9kvawyhlmpnw1yw5"; + rev = "625a5cf79443a532c81f9290b3344ed8f91d2e20"; + sha256 = "1i2l9ss9i39zdxmfzrpvwsp6lx49ly7synrr2bm6byywmpx1cp37"; }; meta.homepage = "https://github.com/Exafunction/codeium.vim/"; }; @@ -2467,12 +2467,12 @@ final: prev: compiler-nvim = buildVimPlugin { pname = "compiler.nvim"; - version = "2024-06-10"; + version = "2024-06-14"; src = fetchFromGitHub { owner = "Zeioth"; repo = "compiler.nvim"; - rev = "77687ea0bd438df4a370f4328c47a220b60c20b0"; - sha256 = "1lxiswlxdx8xpz0jn5ihb4dvjyms1bfipi5j85bjsyr9sfj8jmhj"; + rev = "520ca6e0bd924e3ca8bd26e036a3b830955cf52f"; + sha256 = "18086w0hawhf94xzbgrk2h5qsnxx58w9193v5ldwmx55l7dn9i16"; }; meta.homepage = "https://github.com/Zeioth/compiler.nvim/"; }; @@ -2551,12 +2551,12 @@ final: prev: conform-nvim = buildVimPlugin { pname = "conform.nvim"; - version = "2024-06-10"; + version = "2024-06-19"; src = fetchFromGitHub { owner = "stevearc"; repo = "conform.nvim"; - rev = "07d1298739cd7c616cb683bfd848f6b369f93297"; - sha256 = "15b98s6i6bzwf5hrwndb2mqf3204nilzcbsihjf1f5jjza3491fy"; + rev = "bde3bee1773c96212b6c49f009e05174f932c23a"; + sha256 = "083a6glk20zj1rxnajchi6v6mah9632qmbzrs270lmjplk6dc2qk"; fetchSubmodules = true; }; meta.homepage = "https://github.com/stevearc/conform.nvim/"; @@ -2564,12 +2564,12 @@ final: prev: conjure = buildVimPlugin { pname = "conjure"; - version = "2024-05-24"; + version = "2024-05-31"; src = fetchFromGitHub { owner = "Olical"; repo = "conjure"; - rev = "e97e0db338f76f943f3043089000252adbecc966"; - sha256 = "1lzbkfgvn956dcnc0l2zl910r39hfrpxqrx7l09fhv9d91lqn6w4"; + rev = "934687860a71d1d03e569ce11f880a4d404e69aa"; + sha256 = "1j0rsyw37wc0sh3im1m20akriyj0fmwlhbwfpkzav25wk9c8kmf2"; }; meta.homepage = "https://github.com/Olical/conjure/"; }; @@ -2600,36 +2600,36 @@ final: prev: copilot-cmp = buildVimPlugin { pname = "copilot-cmp"; - version = "2023-09-09"; + version = "2024-06-17"; src = fetchFromGitHub { owner = "zbirenbaum"; repo = "copilot-cmp"; - rev = "72fbaa03695779f8349be3ac54fa8bd77eed3ee3"; - sha256 = "09j6jm77dw6g0d2yxxg954kbsf7vx4zgjyfjq1n9ls5z36i0vf5j"; + rev = "b6e5286b3d74b04256d0a7e3bd2908eabec34b44"; + sha256 = "1y7qp011rm8nx5qr4r97n1zc64377iipankkmn0qz441cjin03zk"; }; meta.homepage = "https://github.com/zbirenbaum/copilot-cmp/"; }; copilot-lua = buildVimPlugin { pname = "copilot.lua"; - version = "2024-02-28"; + version = "2024-06-15"; src = fetchFromGitHub { owner = "zbirenbaum"; repo = "copilot.lua"; - rev = "f7612f5af4a7d7615babf43ab1e67a2d790c13a6"; - sha256 = "01xwq4kz4a3m90z29pf5yp8aiax1nv80lpxzxqc3k7nfr5vfqz95"; + rev = "86537b286f18783f8b67bccd78a4ef4345679625"; + sha256 = "13ri0rj0bgs3s5hkh0hc9blk9xv9knv8q97zrx0y90w4b9k50b8w"; }; meta.homepage = "https://github.com/zbirenbaum/copilot.lua/"; }; copilot-vim = buildVimPlugin { pname = "copilot.vim"; - version = "2024-06-06"; + version = "2024-06-14"; src = fetchFromGitHub { owner = "github"; repo = "copilot.vim"; - rev = "1dcaf72099b436b5832d6117d9cd7a4a098a8d77"; - sha256 = "074c9q0isg7763b8170y5zm4mj5i21y81j0rhqqgafc38yhgpiq4"; + rev = "88d08cf54f623341adde4b18362bffc95174dcd5"; + sha256 = "1ih8f8bbivywlaj54jaxnz6i05770qss028fafqsvn3h9cindigi"; }; meta.homepage = "https://github.com/github/copilot.vim/"; }; @@ -2672,12 +2672,12 @@ final: prev: coq_nvim = buildVimPlugin { pname = "coq_nvim"; - version = "2024-06-09"; + version = "2024-06-11"; src = fetchFromGitHub { owner = "ms-jpq"; repo = "coq_nvim"; - rev = "4ac5c9051e9e133e203a242f345393591fa29eca"; - sha256 = "0rfibvh4r63d36iacnflv0kgmsmyjm00rr1zc8lnnwy74w5ixhi5"; + rev = "83808cfdebca290c84808c85b73f4dbcf5cf981f"; + sha256 = "17l52gd96kfqq4nc0z8qprigvzzrbsa1vijx7kdvgr0qbw4mr5gy"; }; meta.homepage = "https://github.com/ms-jpq/coq_nvim/"; }; @@ -2720,12 +2720,12 @@ final: prev: crates-nvim = buildVimPlugin { pname = "crates.nvim"; - version = "2024-06-06"; + version = "2024-06-19"; src = fetchFromGitHub { owner = "saecki"; repo = "crates.nvim"; - rev = "0c8436cb10e9ac62354baa5874a4a3413f2432c1"; - sha256 = "13ipmpmrmiz4jnaf2a6h459ib22yjli8yy4rqz0sc8gvs9mbxvpx"; + rev = "909d233a8a86fd5ca8ef9eb1e404e89b81e05c41"; + sha256 = "1gbksj75hpkxn5mvvqhyhwx9l2b5xrp2vgwplydxgp3ml4f66rv7"; }; meta.homepage = "https://github.com/saecki/crates.nvim/"; }; @@ -2816,12 +2816,12 @@ final: prev: cyberdream-nvim = buildVimPlugin { pname = "cyberdream.nvim"; - version = "2024-06-10"; + version = "2024-06-18"; src = fetchFromGitHub { owner = "scottmckendry"; repo = "cyberdream.nvim"; - rev = "1801de891253b80e2e5b8fdc7c3faf54f49b93ae"; - sha256 = "14xcxdz3xyjyw3wilyhg4c4hixqlxhmqi0nl37blial8ln1b64p8"; + rev = "db76342d8dff74b9382bf1e9c9e648ee16869809"; + sha256 = "1vzhylvw54jsz3fnmbx85if1izkmzzzbpzmdzw6dvmyqiw4axj7i"; }; meta.homepage = "https://github.com/scottmckendry/cyberdream.nvim/"; }; @@ -2852,24 +2852,24 @@ final: prev: dashboard-nvim = buildVimPlugin { pname = "dashboard-nvim"; - version = "2024-06-04"; + version = "2024-06-12"; src = fetchFromGitHub { owner = "nvimdev"; repo = "dashboard-nvim"; - rev = "5346d023afc4bfc7ff63d05c70bcdb0784bb657a"; - sha256 = "1z26va49qpvihs3h2gkfi6v1plmy952h8ksz56wf5r56c4gmvqhj"; + rev = "b88c997f468a1bacb1e9b13ff3b567638caa06e6"; + sha256 = "0q77lzd9ls62dc3fbzrc401aaxah2sh1p1g9zfsxvimb4y313b7c"; }; meta.homepage = "https://github.com/nvimdev/dashboard-nvim/"; }; debugprint-nvim = buildVimPlugin { pname = "debugprint.nvim"; - version = "2024-05-21"; + version = "2024-06-14"; src = fetchFromGitHub { owner = "andrewferrier"; repo = "debugprint.nvim"; - rev = "375e992064637e6db6da29caab0f90715a5d4d5a"; - sha256 = "1cd7psb7wgy9lz5pgbfp1csbdg98p4cp07yyhlxxw3r41fc6al54"; + rev = "bc691e879a3c1c7b92f62e830d58ec3f40331fbd"; + sha256 = "0paylwmbs15vnj25nxcqn4dw7nzw3xqp7xdq2mr4p6xdhyw4akvx"; }; meta.homepage = "https://github.com/andrewferrier/debugprint.nvim/"; }; @@ -2972,24 +2972,24 @@ final: prev: denops-vim = buildVimPlugin { pname = "denops.vim"; - version = "2024-05-16"; + version = "2024-06-18"; src = fetchFromGitHub { owner = "vim-denops"; repo = "denops.vim"; - rev = "9dd9ae9da9b8d65916dd44e0e4d881665397de63"; - sha256 = "1cvicx69741jna07vm4rchclnspcbpdj8yyik0bsicf95w5w6blp"; + rev = "c6fa7c615ea7209ece65b2322591f0dd0167358d"; + sha256 = "1qxnk06sxrs1i5rhraiid9v6jr2nw5psgj8f0n42jfbpiadb6m2h"; }; meta.homepage = "https://github.com/vim-denops/denops.vim/"; }; deol-nvim = buildVimPlugin { pname = "deol.nvim"; - version = "2024-06-11"; + version = "2024-06-18"; src = fetchFromGitHub { owner = "Shougo"; repo = "deol.nvim"; - rev = "dcdd22afe5f4522361e5236d8a89a92a44b91dc9"; - sha256 = "0zhy4apb1hbgc7apnky6xrr66f8sczsg26m3jfnadmwcwdvwivmc"; + rev = "7fe1a74a1e9abba978e3a1e02f798bf04de71a5f"; + sha256 = "0s61cwhjacnj5rvg87l263pf8rrla6ym8z89pp43wqj875d8d8s5"; }; meta.homepage = "https://github.com/Shougo/deol.nvim/"; }; @@ -3274,12 +3274,12 @@ final: prev: diffview-nvim = buildVimPlugin { pname = "diffview.nvim"; - version = "2024-05-29"; + version = "2024-06-13"; src = fetchFromGitHub { owner = "sindrets"; repo = "diffview.nvim"; - rev = "3afa6a053f680e9f1329c4a151db988a482306cd"; - sha256 = "0ws7zn0y54lg8sq66lfrc1ay92xxvxnr283f3dbzrvw77kdz0bph"; + rev = "4516612fe98ff56ae0415a259ff6361a89419b0a"; + sha256 = "0brabpd02596hg98bml118bx6z2sly98kf1cr2p0xzybiinb4zs9"; }; meta.homepage = "https://github.com/sindrets/diffview.nvim/"; }; @@ -3358,24 +3358,24 @@ final: prev: dressing-nvim = buildVimPlugin { pname = "dressing.nvim"; - version = "2024-06-02"; + version = "2024-06-19"; src = fetchFromGitHub { owner = "stevearc"; repo = "dressing.nvim"; - rev = "e3714c8049b2243e792492c4149e4cc395c68eb9"; - sha256 = "02akn2qw6hjqc0gbwayrdwg8ishgbl94lal7r3kc4gakzkd3nv2i"; + rev = "6741f1062d3dc6e4755367a7e9b347b553623f04"; + sha256 = "0mwg7z7gns6gw3b6iq2xs0hynn846k7r4q4fzqba8ky8bzzh8mrf"; }; meta.homepage = "https://github.com/stevearc/dressing.nvim/"; }; dropbar-nvim = buildVimPlugin { pname = "dropbar.nvim"; - version = "2024-05-25"; + version = "2024-06-15"; src = fetchFromGitHub { owner = "Bekaboo"; repo = "dropbar.nvim"; - rev = "2b546383bdf4daa254ac70c760ee1e5524bc60b1"; - sha256 = "0x52s0s0skqim321frhi9kd9h0d391fngmrc25bgn47s4wkfkp38"; + rev = "79847a78ec0c58f5e5c0360192b03d0cee803e95"; + sha256 = "0k92lqkqfah0xgl3yq85f1fr8pryp6cfcgglwdbsqw1jwsh37687"; }; meta.homepage = "https://github.com/Bekaboo/dropbar.nvim/"; }; @@ -3418,12 +3418,12 @@ final: prev: edgy-nvim = buildVimPlugin { pname = "edgy.nvim"; - version = "2024-03-26"; + version = "2024-06-16"; src = fetchFromGitHub { owner = "folke"; repo = "edgy.nvim"; - rev = "de79b7d92a5979cd71a9a1d8b6282515345e5055"; - sha256 = "0z5mb5cnwdpcswy3w099vyfjz0hmb04j4vbkgxnc8g9y6lffn2rs"; + rev = "a8bc1d24798c80a391f1a5d898a50c41a7f93883"; + sha256 = "066963g4jykzw5fg3mhv301ksc67vmjgzw0fm9izip9qrpb9i91h"; }; meta.homepage = "https://github.com/folke/edgy.nvim/"; }; @@ -3467,12 +3467,12 @@ final: prev: elixir-tools-nvim = buildVimPlugin { pname = "elixir-tools.nvim"; - version = "2024-05-23"; + version = "2024-06-14"; src = fetchFromGitHub { owner = "elixir-tools"; repo = "elixir-tools.nvim"; - rev = "815cf0b0aab0421f8490199c0dd7442d22a7c1b7"; - sha256 = "0b8ikabwh8lpmvb1n1w29vq322ibcld8rk4dpbfalqbrz4gzy8hi"; + rev = "ab10b425a4d4b34447b0699bd93aa42f97bdf4b5"; + sha256 = "180h1w5aka6kz9np5l2xr6kiyw9xkj238lqcgqqv2dx7chdssxsi"; }; meta.homepage = "https://github.com/elixir-tools/elixir-tools.nvim/"; }; @@ -3503,12 +3503,12 @@ final: prev: emmet-vim = buildVimPlugin { pname = "emmet-vim"; - version = "2021-12-04"; + version = "2024-06-14"; src = fetchFromGitHub { owner = "mattn"; repo = "emmet-vim"; - rev = "def5d57a1ae5afb1b96ebe83c4652d1c03640f4d"; - sha256 = "1x9v455q4z71dqzalvswd0l4lsp7ic0h1sr1z6pcgwf8ik3j7f7x"; + rev = "3fb2f63799e1922f7647ed9ff3b32154031a76ee"; + sha256 = "03rlfwfnghqp6bjnpi2mb4f0ki7fyj2im718f51mpfv6wr5c5gac"; fetchSubmodules = true; }; meta.homepage = "https://github.com/mattn/emmet-vim/"; @@ -3781,12 +3781,12 @@ final: prev: flit-nvim = buildVimPlugin { pname = "flit.nvim"; - version = "2024-04-08"; + version = "2024-06-18"; src = fetchFromGitHub { owner = "ggandor"; repo = "flit.nvim"; - rev = "56490317983218b09698f8c960c3669958b12b32"; - sha256 = "1m1l9dh7gwphf7ry7wzvx1hrha3i9b5alp6kpazpjidnjr1mjzb9"; + rev = "a9be4e76c30a128f1e51af448c8321bf8366bcd4"; + sha256 = "0fx2jrnfmr5bl537ha02w3wmkmx89n938h2a4vgc2771kwpb1cy5"; }; meta.homepage = "https://github.com/ggandor/flit.nvim/"; }; @@ -3889,12 +3889,12 @@ final: prev: friendly-snippets = buildVimPlugin { pname = "friendly-snippets"; - version = "2024-06-09"; + version = "2024-06-17"; src = fetchFromGitHub { owner = "rafamadriz"; repo = "friendly-snippets"; - rev = "700c4a25caacbb4648c9a27972c2fe203948e0c2"; - sha256 = "1c21nax3rrnx86vyby4i8ph09n72j2yaxz6gykmb6fd363caplnk"; + rev = "682157939e57bd6a2c86277dfd4d6fbfce63dbac"; + sha256 = "16fivgnm9vzsk0gqjg8xjp15lrfdlq0w9wa00344yifqvbfam9qi"; }; meta.homepage = "https://github.com/rafamadriz/friendly-snippets/"; }; @@ -3997,12 +3997,12 @@ final: prev: fzf-lua = buildNeovimPlugin { pname = "fzf-lua"; - version = "2024-06-11"; + version = "2024-06-19"; src = fetchFromGitHub { owner = "ibhagwan"; repo = "fzf-lua"; - rev = "04a1bb63db5bf7603cdbdd0d8e75a3f2fa8dc301"; - sha256 = "01igpw1xlzka112gikbx4lwrfxl7jlkqr3kvifp3z5zk1az0dfdd"; + rev = "c56717d6833166adadd11cad05d979b1fb370c57"; + sha256 = "17cwiv25qg3lvlm6j5v95pdxd92470kb1495xvp2iaanzzmkl1h8"; }; meta.homepage = "https://github.com/ibhagwan/fzf-lua/"; }; @@ -4127,6 +4127,18 @@ final: prev: meta.homepage = "https://github.com/rhysd/git-messenger.vim/"; }; + git-prompt-string-lualine-nvim = buildVimPlugin { + pname = "git-prompt-string-lualine.nvim"; + version = "2024-04-22"; + src = fetchFromGitHub { + owner = "mikesmithgh"; + repo = "git-prompt-string-lualine.nvim"; + rev = "5426ce15462abe4faf5cd76db7476b2686120fe9"; + sha256 = "sha256-BM1AEpIcOd5nr4N/ZoxK9NodiUbUuY9hw7n/wRTXzzk="; + }; + meta.homepage = "https://github.com/mikesmithgh/git-prompt-string-lualine.nvim/"; + }; + git-worktree-nvim = buildVimPlugin { pname = "git-worktree.nvim"; version = "2023-11-07"; @@ -4177,12 +4189,12 @@ final: prev: gitsigns-nvim = buildNeovimPlugin { pname = "gitsigns.nvim"; - version = "2024-06-07"; + version = "2024-06-19"; src = fetchFromGitHub { owner = "lewis6991"; repo = "gitsigns.nvim"; - rev = "4a143f13e122ab91abdc88f89eefbe70a4858a56"; - sha256 = "09rqxrw8wcybcd806zgqcgich9x88sdsqvm8638y08bb18bj6rqm"; + rev = "651d5ed082605f3ed96b0f037a768ca06ecf8fc3"; + sha256 = "0fllibgmp1sfargpkswg1h3kg667y0sdazc0z5midaq8skr9crz6"; }; meta.homepage = "https://github.com/lewis6991/gitsigns.nvim/"; }; @@ -4237,12 +4249,12 @@ final: prev: go-nvim = buildVimPlugin { pname = "go.nvim"; - version = "2024-05-30"; + version = "2024-06-19"; src = fetchFromGitHub { owner = "ray-x"; repo = "go.nvim"; - rev = "8f8ab4b968d08bd70ecda1f2909fb5e6177452ca"; - sha256 = "1i2faj6lz9k13h7qlv1ibq9argd45znvw86jg3iidhqm2g8ajlvh"; + rev = "78c6d7b970a79c34dc0f35149f4bd845e09803d6"; + sha256 = "0pg14jml1n27imy4rdb1ri7wi7bnh2fp8q7rah5az8k80g26ghpg"; }; meta.homepage = "https://github.com/ray-x/go.nvim/"; }; @@ -4405,12 +4417,12 @@ final: prev: gruvbox-material-nvim = buildVimPlugin { pname = "gruvbox-material.nvim"; - version = "2024-05-23"; + version = "2024-06-16"; src = fetchFromGitHub { owner = "f4z3r"; repo = "gruvbox-material.nvim"; - rev = "0ecaa68ace7862ff7e0b28371965a760be99e673"; - sha256 = "1azqb5hpjww6sxvwbk5l0q1lzf0dm7ymp665pw93qxxlaijasllr"; + rev = "0ab9d8c7a8b4cd26338ca0c816c4ca1a48f9d5d6"; + sha256 = "0il0rkj3yskfy591phdvyd8kdc14303m1g58hygvdd46ccsxj8kw"; }; meta.homepage = "https://github.com/f4z3r/gruvbox-material.nvim/"; }; @@ -4453,12 +4465,12 @@ final: prev: guess-indent-nvim = buildVimPlugin { pname = "guess-indent.nvim"; - version = "2023-04-03"; + version = "2024-06-19"; src = fetchFromGitHub { owner = "nmac427"; repo = "guess-indent.nvim"; - rev = "b8ae749fce17aa4c267eec80a6984130b94f80b2"; - sha256 = "1i31vbwih28yzjnkmv1xkjrbviyardk7j1dpxmcwa1ch8v4iz93y"; + rev = "6c75506e71836f34fe5c5efa322dfce3e0494e7b"; + sha256 = "0pg2jbksvdh6sy1ygygiax5r1d93axmdg6n0jdk6iyfa1jlzdhrw"; }; meta.homepage = "https://github.com/nmac427/guess-indent.nvim/"; }; @@ -4489,12 +4501,12 @@ final: prev: hardhat-nvim = buildVimPlugin { pname = "hardhat.nvim"; - version = "2024-05-21"; + version = "2024-06-14"; src = fetchFromGitHub { owner = "TheSnakeWitcher"; repo = "hardhat.nvim"; - rev = "6cdda17ff53c947b96e563c26fd81005d95f3328"; - sha256 = "01wccn69wgv979wksmwhkan0zy1z2rc0miz1613c52kyw6fdkcq9"; + rev = "9d5b241261904ae22429877c1459e7c632dba736"; + sha256 = "1xb93g4cxy3w4jjagaqmyvf2qfii4fm5biriadkmf4a08vdxg682"; }; meta.homepage = "https://github.com/TheSnakeWitcher/hardhat.nvim/"; }; @@ -4560,12 +4572,12 @@ final: prev: haskell-tools-nvim = buildNeovimPlugin { pname = "haskell-tools.nvim"; - version = "2024-06-03"; + version = "2024-06-16"; src = fetchFromGitHub { owner = "MrcJkb"; repo = "haskell-tools.nvim"; - rev = "ce95d095fc5abe29868c1bca35ce815803a90148"; - sha256 = "1md4n679h3r9p49n2wvsm49f54grijnkfmn8dd7djjlvdq69g4yx"; + rev = "0223bf4b47ab517030f406617c153e7d1e4a7811"; + sha256 = "1ab3s6lrqh870qcphxjsvj5q8jg7lxv27119r5qyp60rf657q39a"; }; meta.homepage = "https://github.com/MrcJkb/haskell-tools.nvim/"; }; @@ -4751,12 +4763,12 @@ final: prev: hover-nvim = buildVimPlugin { pname = "hover.nvim"; - version = "2024-06-04"; + version = "2024-06-12"; src = fetchFromGitHub { owner = "lewis6991"; repo = "hover.nvim"; - rev = "4d2cef11e03879bbb5514f6fa26fe13ec5a210bd"; - sha256 = "18vzvlcr8005vcdhgwda88gvv3gbkimchqsrlj1gns0byxywjdj0"; + rev = "4339cbbcb572b1934c53dcb66ad4bf6a0abb7918"; + sha256 = "1nnhm8xhkdjvqal7016v22cljhpga8y0mydmvalz954cviskhna3"; }; meta.homepage = "https://github.com/lewis6991/hover.nvim/"; }; @@ -4799,12 +4811,12 @@ final: prev: iceberg-vim = buildVimPlugin { pname = "iceberg.vim"; - version = "2022-11-23"; + version = "2024-06-19"; src = fetchFromGitHub { owner = "cocopon"; repo = "iceberg.vim"; - rev = "e01ac08c2202e7544531f4d806f6893539da6471"; - sha256 = "19a0wk1qjp385jmd3kp3r5mkmly90j0jipz64zkbpdsh0v8fvsnk"; + rev = "23835d5ed696436f716cbfdb56a93a7850fe3b18"; + sha256 = "04cw04yirvbfq1l7wbavpnx46830qsp3cgx6rqidhhj794pn3xvc"; }; meta.homepage = "https://github.com/cocopon/iceberg.vim/"; }; @@ -4847,12 +4859,12 @@ final: prev: image-nvim = buildNeovimPlugin { pname = "image.nvim"; - version = "2024-06-05"; + version = "2024-06-16"; src = fetchFromGitHub { owner = "3rd"; repo = "image.nvim"; - rev = "a2a0849e0b3dbed90f9283603cedb683bda5d4d1"; - sha256 = "18rs9wfckgkkw77hw0j244bl4c3asicbvigcnxv5galph1p1ws4g"; + rev = "bdd5506be7fb39668692e30141f1637b691379af"; + sha256 = "0dfvg393l0rwr8lm25fkw8gh1vx592jc1ccslal81jvyjnvgc237"; }; meta.homepage = "https://github.com/3rd/image.nvim/"; }; @@ -5197,12 +5209,12 @@ final: prev: kanagawa-nvim = buildVimPlugin { pname = "kanagawa.nvim"; - version = "2024-05-26"; + version = "2024-06-12"; src = fetchFromGitHub { owner = "rebelot"; repo = "kanagawa.nvim"; - rev = "08ed29989834f5f2606cb1ef9d5b24c5ea7b8fa5"; - sha256 = "1whdsamsl0qss92hmby1q8ch6r6hvfsz87kv4gr1aqpi51vdxyrn"; + rev = "fe5b2c9e2549862c3dc3f3c8e9cf7ddece0f40c2"; + sha256 = "1ip8f9i822d6mmaxvzrvap19k5lr9mp8k6lgh2xyspszbgxi0nhg"; }; meta.homepage = "https://github.com/rebelot/kanagawa.nvim/"; }; @@ -5233,12 +5245,12 @@ final: prev: knap = buildVimPlugin { pname = "knap"; - version = "2024-05-28"; + version = "2024-06-13"; src = fetchFromGitHub { owner = "frabjous"; repo = "knap"; - rev = "00e94c10b5b969b2aca791f1b2d36ad77c89a252"; - sha256 = "0bryyya5wgxh45nh2injmhhrzgkaca62cn9vaifbcyrmpp99y140"; + rev = "0040760bb504a713ea5988c7c490a15faf477c57"; + sha256 = "1l09cc3mi9w9y6g23cylxd5jsrwh451bbmi7w7amymwz17419wsf"; }; meta.homepage = "https://github.com/frabjous/knap/"; }; @@ -5317,24 +5329,24 @@ final: prev: lazy-nvim = buildVimPlugin { pname = "lazy.nvim"; - version = "2024-06-07"; + version = "2024-06-18"; src = fetchFromGitHub { owner = "folke"; repo = "lazy.nvim"; - rev = "eb4957442e3182f051b0ae11da32e06d22c190e3"; - sha256 = "11bi66yvmff74102w903z9fx756n7zvkq0nb15ssq0vyikq4m13z"; + rev = "bc620783663ab09d16bff9fdecc07da65b2a1528"; + sha256 = "180rvpy9bv7c7gnimhwgzyxr2hml9v371ki8n73v726ssk4x1pzc"; }; meta.homepage = "https://github.com/folke/lazy.nvim/"; }; lazydev-nvim = buildVimPlugin { - pname = "lazydev-nvim"; - version = "2024-06-09"; + pname = "lazydev.nvim"; + version = "2024-06-15"; src = fetchFromGitHub { owner = "folke"; repo = "lazydev.nvim"; - rev = "7cbb524c85f87017df9c1ea2377a1d840ad8ed51"; - sha256 = "034abfj3rskgqqcynw6mz61bhjmq8x8qn6f4lq6wvyhzhkfplaqb"; + rev = "6184ebbbc8045d70077659b7d30c705a588dc62f"; + sha256 = "1kj3p5x7h8k1xp8m5pxjkzbfigcbrschgm1kzlc3qkv0py3i5k5h"; }; meta.homepage = "https://github.com/folke/lazydev.nvim/"; }; @@ -5389,24 +5401,24 @@ final: prev: leap-nvim = buildVimPlugin { pname = "leap.nvim"; - version = "2024-06-04"; + version = "2024-06-18"; src = fetchFromGitHub { owner = "ggandor"; repo = "leap.nvim"; - rev = "0d15057cc47fa49f6609bf364f5ad3842f08c58c"; - sha256 = "0wlrj39ynv6h5sp37zwhvqmz8pvch5xy0jvqlgh724ibkidf7lh8"; + rev = "2ec33f2a38974fe6997c42c5ce61ce84eab84cc8"; + sha256 = "0xavag2c5mq5ii14b5dvm7nm13cs97nhag28gpvjdzwgkzz3c21v"; }; meta.homepage = "https://github.com/ggandor/leap.nvim/"; }; legendary-nvim = buildVimPlugin { pname = "legendary.nvim"; - version = "2024-06-07"; + version = "2024-06-14"; src = fetchFromGitHub { owner = "mrjones2014"; repo = "legendary.nvim"; - rev = "280d5ffa73927317ff44d781ac1becdec6415540"; - sha256 = "0v5nmfz3adzpf5pbr0qf83w5c1fz8s9i2i4a1xqlqfxm77vxj9k8"; + rev = "89e0d00c5aed623c1f29cf2a963fd1737358e92a"; + sha256 = "0i4xh66xydssvr4n2kknrg1qibj8ikfvy5m6ljbmhbvgxim74y48"; }; meta.homepage = "https://github.com/mrjones2014/legendary.nvim/"; }; @@ -5665,12 +5677,12 @@ final: prev: llm-nvim = buildVimPlugin { pname = "llm.nvim"; - version = "2024-06-10"; + version = "2024-06-18"; src = fetchFromGitHub { owner = "huggingface"; repo = "llm.nvim"; - rev = "1dcf5192f9cd2c1cb5e7c78fbebf45a56e178f66"; - sha256 = "0bi9dlk8wy6nrfjsrvppypl0rg4w154s43y7y2v9wg7sdswn583z"; + rev = "9832a149bdcf0709433ca9c2c3a1c87460e98d13"; + sha256 = "1ywlvpbsgdzn7idv0sjcbp6nh2h18h9a9cmqvl3b3h928651xi53"; }; meta.homepage = "https://github.com/huggingface/llm.nvim/"; }; @@ -5784,12 +5796,12 @@ final: prev: lsp_signature-nvim = buildVimPlugin { pname = "lsp_signature.nvim"; - version = "2024-06-01"; + version = "2024-06-15"; src = fetchFromGitHub { owner = "ray-x"; repo = "lsp_signature.nvim"; - rev = "2ec2ba23882329c1302dff773b0d3620371d634f"; - sha256 = "15nccly483r7sjvbb268y3sy2n81ap40xyryvidll6ghb2yljcvv"; + rev = "a38da0a61c172bb59e34befc12efe48359884793"; + sha256 = "1p6fznwg6pxr39x08lf9qhjkcvfysd58k1as6d4lwibkav7rfkki"; }; meta.homepage = "https://github.com/ray-x/lsp_signature.nvim/"; }; @@ -5820,24 +5832,24 @@ final: prev: lspsaga-nvim = buildVimPlugin { pname = "lspsaga.nvim"; - version = "2024-06-09"; + version = "2024-06-11"; src = fetchFromGitHub { owner = "nvimdev"; repo = "lspsaga.nvim"; - rev = "343b71768c741432bab47d201624e92126a38686"; - sha256 = "0r0g30096rx5aqzigdlm6brr53lx87vk7bxm0zxnd93wnrqfayxb"; + rev = "6f920cfabddb9b7de5a3a4d0b7cd4f0774ae23e2"; + sha256 = "1zgc53kdc10k7pa67svjw9bndazblmjw1lrsmdprggsxvcd1x2n8"; }; meta.homepage = "https://github.com/nvimdev/lspsaga.nvim/"; }; ltex_extra-nvim = buildVimPlugin { pname = "ltex_extra.nvim"; - version = "2024-05-30"; + version = "2024-06-15"; src = fetchFromGitHub { owner = "barreiroleo"; repo = "ltex_extra.nvim"; - rev = "3ee08af31bf826c6ae2ca2a294b79f688306c0be"; - sha256 = "0br2bq86a83wrix684agcfrxaf24x9nllmkvwzj6qi73199q1a9c"; + rev = "24acd044ce7a26b3cdb537cbd094de37c3e1ac45"; + sha256 = "1dq93f4aj3xni9xbls8bhsf5jja36dlpgdlkfk1lvkvyh489wrrq"; }; meta.homepage = "https://github.com/barreiroleo/ltex_extra.nvim/"; }; @@ -5881,12 +5893,12 @@ final: prev: luatab-nvim = buildVimPlugin { pname = "luatab.nvim"; - version = "2024-05-19"; + version = "2024-06-16"; src = fetchFromGitHub { owner = "alvarosevilla95"; repo = "luatab.nvim"; - rev = "d771888a061db83f1338fbca827bde4a19658c22"; - sha256 = "1wqvnp273warkvrpbbprz3ndwpfddiwq40hl4qr76l3zacyqhkhb"; + rev = "93504f3eda13fc925834429d4caa419d65bc6a01"; + sha256 = "138wp7qm2w0p7y02hplnl6grgi49p9r9wbxfb6brx1zgyqqcxv09"; }; meta.homepage = "https://github.com/alvarosevilla95/luatab.nvim/"; }; @@ -5917,12 +5929,12 @@ final: prev: lz-n = buildNeovimPlugin { pname = "lz.n"; - version = "2024-06-16"; + version = "2024-06-19"; src = fetchFromGitHub { owner = "nvim-neorocks"; repo = "lz.n"; - rev = "ffd6633cbe2145177bd522fa340104fa44afbc1c"; - sha256 = "sha256-aV+m4+8oWwIPTQhilXfHOUyYqQGl4NRnk7HvEQYMp0Y="; + rev = "ed1dfca4c69ad84558bace90740b3ea2dd6ac842"; + sha256 = "122rx7khasj0liwrw07m4x7ysq86342b3q5fzg0gdkln7nn5pv4n"; }; meta.homepage = "https://github.com/nvim-neorocks/lz.n/"; }; @@ -6001,12 +6013,12 @@ final: prev: mason-lspconfig-nvim = buildVimPlugin { pname = "mason-lspconfig.nvim"; - version = "2024-06-07"; + version = "2024-06-12"; src = fetchFromGitHub { owner = "williamboman"; repo = "mason-lspconfig.nvim"; - rev = "8db12610bcb7ce67013cfdfaba4dd47a23c6e851"; - sha256 = "01d9kpaiap1m59ms810qfsly70rl45168iq6k4z5s248cjpij0dz"; + rev = "37a336b653f8594df75c827ed589f1c91d91ff6c"; + sha256 = "1xiv4km5m3y8znqq2a5f31fqw5aygcdr11lwpg0xrvf359z41g7i"; }; meta.homepage = "https://github.com/williamboman/mason-lspconfig.nvim/"; }; @@ -6049,12 +6061,12 @@ final: prev: material-nvim = buildVimPlugin { pname = "material.nvim"; - version = "2024-05-17"; + version = "2024-06-15"; src = fetchFromGitHub { owner = "marko-cerovac"; repo = "material.nvim"; - rev = "b6407868026175fda8b2e3dfdc524a3c60222a23"; - sha256 = "0iz9d8a20w0jdv1d9lslwpcz7w6rj6n9gdqmlcic8744rcgkqqm2"; + rev = "173bde5eea25e73c5ece9448e19c3e30b5b21ae1"; + sha256 = "0smlnk3d5dv33ww1k96f7mbyy6xs3ma179f86kifv08k1wn7n4xq"; }; meta.homepage = "https://github.com/marko-cerovac/material.nvim/"; }; @@ -6145,12 +6157,12 @@ final: prev: mini-nvim = buildVimPlugin { pname = "mini.nvim"; - version = "2024-06-09"; + version = "2024-06-14"; src = fetchFromGitHub { owner = "echasnovski"; repo = "mini.nvim"; - rev = "f1dd64cf2ac1b348bd440e59446abf680c7188d6"; - sha256 = "04zxj23lsl8fy9pqkr5vkwhb3s90609d76lqp496qxihxhdjnvrm"; + rev = "ebc8cb0c1f73ee6c53e0560957a37a2307a70f98"; + sha256 = "0jvrqs9fmn8m1h5wdnl981dpjyp4w9b5q09ypblg6dp1f817c0nf"; }; meta.homepage = "https://github.com/echasnovski/mini.nvim/"; }; @@ -6181,12 +6193,12 @@ final: prev: mkdnflow-nvim = buildVimPlugin { pname = "mkdnflow.nvim"; - version = "2024-06-05"; + version = "2024-06-14"; src = fetchFromGitHub { owner = "jakewvincent"; repo = "mkdnflow.nvim"; - rev = "ff86169949466bf3e43e87a7c44c696fe7445e7b"; - sha256 = "1fymhj6jgzhzg6md8y0yb3rqajzypbf44d3ganfzifwks8q7gf03"; + rev = "e6179d25f7e696baa612aa35b951b5ca3f3e75b6"; + sha256 = "02mvgvdrq9p80gcgh668qajgc32pxhn5aahw0gkc40mc4f10lzlm"; }; meta.homepage = "https://github.com/jakewvincent/mkdnflow.nvim/"; }; @@ -6205,12 +6217,12 @@ final: prev: modicator-nvim = buildVimPlugin { pname = "modicator.nvim"; - version = "2024-03-05"; + version = "2024-06-19"; src = fetchFromGitHub { owner = "mawkler"; repo = "modicator.nvim"; - rev = "780ea1e98c9bee8f3816685213b0aac42b34cd75"; - sha256 = "1db48c8yfpvlz5v17c7vxrsjz8n0x0fxjbb59w0bm88n85rd2pnv"; + rev = "d1d327fd4bdfc3af4cfdf83b85c2eaefa71de7a8"; + sha256 = "1w1rybbh6dhzc0qvw5mr0kv0qcpqxasdhwzghl5g1k9rq520q42y"; }; meta.homepage = "https://github.com/mawkler/modicator.nvim/"; }; @@ -6577,12 +6589,12 @@ final: prev: neoconf-nvim = buildVimPlugin { pname = "neoconf.nvim"; - version = "2024-06-11"; + version = "2024-06-19"; src = fetchFromGitHub { owner = "folke"; repo = "neoconf.nvim"; - rev = "c81b91fbb39d4d46aedca2d1eacaa2389ae0eeaa"; - sha256 = "0qrjdxcvhzpra3fdsz29zd5j22y4g1xyda5p14j0chs60r6qzmms"; + rev = "60f6dd6aa1006fa5c3ff4b7bf01586dcecbe9187"; + sha256 = "03hz05kpzrbwy2d9pdmi2yihg7svsh876fv3kk0276v9276hwi1s"; }; meta.homepage = "https://github.com/folke/neoconf.nvim/"; }; @@ -6649,12 +6661,12 @@ final: prev: neogit = buildVimPlugin { pname = "neogit"; - version = "2024-06-10"; + version = "2024-06-17"; src = fetchFromGitHub { owner = "NeogitOrg"; repo = "neogit"; - rev = "e11bd464f3a3b4b3af8ea0a8e54ee1b70fee7371"; - sha256 = "19ih3nisp3hflv0zkwkq0xd12qq28pi6aqx6w2xfj88qf1m2qfhq"; + rev = "11dea1b67bb153cd5b4a2de348ceefa69508dfce"; + sha256 = "07d8kmn19hngl06ak2ch7p0mfjwlgyim0xkjfmnsdhxd0ksqdn49"; }; meta.homepage = "https://github.com/NeogitOrg/neogit/"; }; @@ -6721,24 +6733,24 @@ final: prev: neorg = buildVimPlugin { pname = "neorg"; - version = "2024-06-10"; + version = "2024-06-13"; src = fetchFromGitHub { owner = "nvim-neorg"; repo = "neorg"; - rev = "5239a98c462fb24201e76305d9d6265e4742a31e"; - sha256 = "1y6vvz86rfk9y58ifk9rx1baqvb05cr5xyyqi7zvjx0hnn3q1kis"; + rev = "ebf75f57fa8dadd8747a678724b273b398143dc4"; + sha256 = "05zq8q88z14hd9y9ywp09kxjxpxfzb72yjm3gl7px8xxh18nqrds"; }; meta.homepage = "https://github.com/nvim-neorg/neorg/"; }; neorg-telescope = buildVimPlugin { pname = "neorg-telescope"; - version = "2024-06-05"; + version = "2024-06-19"; src = fetchFromGitHub { owner = "nvim-neorg"; repo = "neorg-telescope"; - rev = "329ee31b8d92f252d880d8f607089eb89a1640b8"; - sha256 = "05nrab0qr5llmmbbyyqimxj8zrfcdcgqh5rgy25bgibvc34wcdhs"; + rev = "fe255a3432ce639de7a374ccfb8602f517244dcd"; + sha256 = "0w86sh0pfff7qipjwgfqhsvm95j0hlv1srn9p2fphg1jsixfd5jm"; }; meta.homepage = "https://github.com/nvim-neorg/neorg-telescope/"; }; @@ -6903,12 +6915,12 @@ final: prev: neotest-gtest = buildVimPlugin { pname = "neotest-gtest"; - version = "2024-05-21"; + version = "2024-06-12"; src = fetchFromGitHub { owner = "alfaix"; repo = "neotest-gtest"; - rev = "081787a082abc0a14d53b3baff4aa5964045d204"; - sha256 = "10dfb9jc95zp2vk0avw8g3s0gqxi1nnsgcll8bqfdb545ag82w2x"; + rev = "b44c8afc26cea75ffc80617ce07b4e745a56e589"; + sha256 = "09h94w4s1yp3qx0n342qkksixgilkfmqiqp65jayfxiwa3jpkgya"; fetchSubmodules = true; }; meta.homepage = "https://github.com/alfaix/neotest-gtest/"; @@ -6916,24 +6928,24 @@ final: prev: neotest-haskell = buildVimPlugin { pname = "neotest-haskell"; - version = "2024-06-10"; + version = "2024-06-16"; src = fetchFromGitHub { owner = "MrcJkb"; repo = "neotest-haskell"; - rev = "35582894783456a50094086c1c3cfad50d980c1a"; - sha256 = "0y2mdn98jf81zpmzb78kqazss8b518z7ypy4p009vbvz9wv1hzy9"; + rev = "0481d2c79564d6658caa1a4962bdfba3a608b5d1"; + sha256 = "142j5s3fcyggkrx92w8k6d3vas2m7580k9vd6ca913adby5ys2cn"; }; meta.homepage = "https://github.com/MrcJkb/neotest-haskell/"; }; neotest-java = buildVimPlugin { pname = "neotest-java"; - version = "2024-05-24"; + version = "2024-06-15"; src = fetchFromGitHub { owner = "rcasia"; repo = "neotest-java"; - rev = "154c937b9bd8613b943a27b989813f0532fd80ed"; - sha256 = "1n3c1lribbzq1w1h08qh51f3173bzganyf45aagb8rq2wdkm5r89"; + rev = "7b9e0419bd92f641f730e31a4236074e53a5ac99"; + sha256 = "1f9a0aa4q6c4armj9fjmbkpk2j2svgiyf1mlmq46g0mqcmhnnbbh"; }; meta.homepage = "https://github.com/rcasia/neotest-java/"; }; @@ -6988,12 +7000,12 @@ final: prev: neotest-playwright = buildVimPlugin { pname = "neotest-playwright"; - version = "2024-06-08"; + version = "2024-06-18"; src = fetchFromGitHub { owner = "thenbe"; repo = "neotest-playwright"; - rev = "e35465a43729dbf9f790c56c9c6e3402ba27a2c0"; - sha256 = "1ghrms2mv1lgmkbyyhcqf3vxjxhx3cvvmhaw1cnw5ba51rg292qg"; + rev = "f61463f5c74d53fc5975b7e086b7c6e9356d9215"; + sha256 = "18d9qqxqrgng373xlkiinxcp9s13zj40sjxsibhdccji75pr3ziy"; }; meta.homepage = "https://github.com/thenbe/neotest-playwright/"; }; @@ -7084,12 +7096,12 @@ final: prev: neotest-zig = buildVimPlugin { pname = "neotest-zig"; - version = "2024-06-09"; + version = "2024-06-17"; src = fetchFromGitHub { owner = "lawrence-laz"; repo = "neotest-zig"; - rev = "7308fc1f7f3d4a876f5b941bc42b2066b7b8edf6"; - sha256 = "0x7hfaafj3iqiyz9jp2prhayinchvfniamvym2x8lnijsfx443z9"; + rev = "7cc48ba642a6acb96f377054cc4439c6a135fb5d"; + sha256 = "0dlc2zd5qwak5gwv1pv1arbpj56scnaz4n1my50i97rvj4yf3vmh"; }; meta.homepage = "https://github.com/lawrence-laz/neotest-zig/"; }; @@ -7300,12 +7312,12 @@ final: prev: nlsp-settings-nvim = buildVimPlugin { pname = "nlsp-settings.nvim"; - version = "2024-06-10"; + version = "2024-06-19"; src = fetchFromGitHub { owner = "tamago324"; repo = "nlsp-settings.nvim"; - rev = "731654f66617aea9017e8e7fc22a9a7f80b5af61"; - sha256 = "0rfp9kywi6raz9m7ll4y25hm5dn3629r55kv2biang31gyyp16cb"; + rev = "4c068cf7a74d77cc405aedda875f3174f7eb9143"; + sha256 = "1q5wrryf5xp13lljjgm95aavn4s2cq0p52pbxcxykm97vm1zi9n7"; }; meta.homepage = "https://github.com/tamago324/nlsp-settings.nvim/"; }; @@ -7360,24 +7372,24 @@ final: prev: noice-nvim = buildVimPlugin { pname = "noice.nvim"; - version = "2024-06-07"; + version = "2024-06-18"; src = fetchFromGitHub { owner = "folke"; repo = "noice.nvim"; - rev = "e5cb20c6e14305d24025ecb77d7d4dd9d61f1a64"; - sha256 = "18r6prl1qba6b21j66zwipn2vz6lc7kc47x72xgf9hln2c93vrpn"; + rev = "88ac36864b5976a64b14a8f156c616f41b32f228"; + sha256 = "0qkm5g6mfaydgbsgkkng79j3zm0nfbnim30ibjpgby74fjpmzp09"; }; meta.homepage = "https://github.com/folke/noice.nvim/"; }; none-ls-nvim = buildVimPlugin { pname = "none-ls.nvim"; - version = "2024-06-04"; + version = "2024-06-14"; src = fetchFromGitHub { owner = "nvimtools"; repo = "none-ls.nvim"; - rev = "8691504118b252d64fc5023a104aedd100ab754a"; - sha256 = "0ihnnhd6jqhdz5zkbjvm1cahjq16ppsxcm4l8k09qdk5v66syjma"; + rev = "cc0a3c45047e3daf85d07c1571d65476cfce6480"; + sha256 = "1aa2dcrrwmbh8dh8vccwz2jdwyfsy10jagvqbpmh7ax1mnmphnqv"; }; meta.homepage = "https://github.com/nvimtools/none-ls.nvim/"; }; @@ -7396,12 +7408,12 @@ final: prev: nordic-nvim = buildVimPlugin { pname = "nordic.nvim"; - version = "2024-03-15"; + version = "2024-06-16"; src = fetchFromGitHub { owner = "andersevenrud"; repo = "nordic.nvim"; - rev = "9697dc86e888f603cdb7e3a0742b7814b8a01cd1"; - sha256 = "1rf4z8rvdh4iv4ifq3z1hic2ldcpkja82834w5nhig3x2rn5hw7m"; + rev = "c88388b2a5f6e621df2718c316b856d4971bb89d"; + sha256 = "0js2dmiaa5jwym2c3xwzcwprbnyk7rp61wn7hzl3gkgn239sv6ca"; }; meta.homepage = "https://github.com/andersevenrud/nordic.nvim/"; }; @@ -7838,6 +7850,18 @@ final: prev: meta.homepage = "https://github.com/sakhnik/nvim-gdb/"; }; + nvim-genghis = buildVimPlugin { + pname = "nvim-genghis"; + version = "2024-06-19"; + src = fetchFromGitHub { + owner = "chrisgrieser"; + repo = "nvim-genghis"; + rev = "6077a6376f9a15eaf3d60a12caca57adb59028b5"; + sha256 = "1lm9mjjqwgf4cqgh4xkq9kfbx9bjz6p68dfimixm3rlsvrxz2wai"; + }; + meta.homepage = "https://github.com/chrisgrieser/nvim-genghis/"; + }; + nvim-gps = buildVimPlugin { pname = "nvim-gps"; version = "2022-07-05"; @@ -7876,12 +7900,12 @@ final: prev: nvim-hlslens = buildVimPlugin { pname = "nvim-hlslens"; - version = "2024-04-05"; + version = "2024-06-14"; src = fetchFromGitHub { owner = "kevinhwang91"; repo = "nvim-hlslens"; - rev = "3e8fceb2b030100857ee72741a8f48c9a1d8595e"; - sha256 = "0j6i7rv78xxkmqgmi4w7yqhj4rng7p2skbgs8gq8jcb3k6ghcs3q"; + rev = "1db56afda3e85791a14b096e483dfda699dd9163"; + sha256 = "13mx0p3ia7wajvjk1gvyhnv2v5z900bjr4c82b1wbdpmv68z69yv"; }; meta.homepage = "https://github.com/kevinhwang91/nvim-hlslens/"; }; @@ -8019,12 +8043,12 @@ final: prev: nvim-lspconfig = buildVimPlugin { pname = "nvim-lspconfig"; - version = "2024-06-10"; + version = "2024-06-18"; src = fetchFromGitHub { owner = "neovim"; repo = "nvim-lspconfig"; - rev = "4d38bece98300e3e5cd24a9aa0d0ebfea4951c16"; - sha256 = "0aj6bxm43bwgfajg23z6kj32kmihizfg7hs75fjxyzvian2w27km"; + rev = "5c33bf1f708ac8cb839469e1a03d45987fec305c"; + sha256 = "1mdqckjmk1hdxgipa2qwncwmbv6ad8mi5cqisinkz7610k55sxpm"; }; meta.homepage = "https://github.com/neovim/nvim-lspconfig/"; }; @@ -8283,12 +8307,12 @@ final: prev: nvim-scrollview = buildVimPlugin { pname = "nvim-scrollview"; - version = "2024-05-17"; + version = "2024-06-13"; src = fetchFromGitHub { owner = "dstein64"; repo = "nvim-scrollview"; - rev = "9257c3f3ebf7608a8711caf44f878d87cd40395d"; - sha256 = "1nppzm8v7akpz38f9zr22m2281hdxvhxiy8a46kprrhw2030j4k1"; + rev = "fd334e5ad0c616987d1b9114890a59c97165cf83"; + sha256 = "1s8dr79mnqw2ii54myi43fy3knd2i28c2k5g59fln2m8g90j21lg"; }; meta.homepage = "https://github.com/dstein64/nvim-scrollview/"; }; @@ -8439,12 +8463,12 @@ final: prev: nvim-treesitter = buildVimPlugin { pname = "nvim-treesitter"; - version = "2024-06-11"; + version = "2024-06-19"; src = fetchFromGitHub { owner = "nvim-treesitter"; repo = "nvim-treesitter"; - rev = "9a7ad2ff7a7ea81016aca2fc89c9b2c1a5365421"; - sha256 = "02jpij2aqg651m7nn1bzncbj49qgpvz78v2627isndyvxlifn0pd"; + rev = "66ae8748fd4e8550c8b17cf115c9739aea1e4067"; + sha256 = "0hll69cjhgjnbyh6xqvk9xk6pr8fna9h1rj4nz3fkmq57iwzs812"; }; meta.homepage = "https://github.com/nvim-treesitter/nvim-treesitter/"; }; @@ -8523,12 +8547,12 @@ final: prev: nvim-ts-autotag = buildVimPlugin { pname = "nvim-ts-autotag"; - version = "2024-06-10"; + version = "2024-06-11"; src = fetchFromGitHub { owner = "windwp"; repo = "nvim-ts-autotag"; - rev = "2692808eca8a4ac3311516a1c4a14bb97ecc6482"; - sha256 = "10cfvdpp6ml6cm64wi6xvcfhgjap526ws94nkjrii22fh318av4p"; + rev = "06fe07d7523ba8c755fac7c913fceba43b1720ee"; + sha256 = "1k23jy33abcxc84qgkw68mzbcl8fxpvg8p5phh5pgvp5n32aspbz"; }; meta.homepage = "https://github.com/windwp/nvim-ts-autotag/"; }; @@ -8655,12 +8679,12 @@ final: prev: obsidian-nvim = buildVimPlugin { pname = "obsidian.nvim"; - version = "2024-06-04"; + version = "2024-06-17"; src = fetchFromGitHub { owner = "epwalsh"; repo = "obsidian.nvim"; - rev = "c6bd6d93e4724ac2dc0cae73ebe1d568bf406537"; - sha256 = "0jkr1mwl2bi0nqr41f5vjm4wwvypwbmm20bznjmah1dq6sjhb11d"; + rev = "7e087da48bd88fb3a6c6229a97713ac35694337a"; + sha256 = "1dgqm7qjnkgz9wm8fv5j6q2f46ip9hac1csbwxv7lqavi1xw9p0l"; }; meta.homepage = "https://github.com/epwalsh/obsidian.nvim/"; }; @@ -8691,24 +8715,24 @@ final: prev: octo-nvim = buildVimPlugin { pname = "octo.nvim"; - version = "2024-06-09"; + version = "2024-06-15"; src = fetchFromGitHub { owner = "pwntester"; repo = "octo.nvim"; - rev = "22f34582a4eb1fb221eafd0daa9eb1b2bacfb813"; - sha256 = "1zxa89b375vc7zjnbg42fcc7npr2gmpk2d04ld9yqkapy0q8jds0"; + rev = "1f0029d5283443bad9a818fd7d9db253404bf8aa"; + sha256 = "1il6jy83d56lxlgxyklvl76dxk7iikq2941jl6ihbf0v5lbig472"; }; meta.homepage = "https://github.com/pwntester/octo.nvim/"; }; oil-nvim = buildVimPlugin { pname = "oil.nvim"; - version = "2024-06-10"; + version = "2024-06-16"; src = fetchFromGitHub { owner = "stevearc"; repo = "oil.nvim"; - rev = "a62ec258d1c99d354b256a2ec39733ad9109d808"; - sha256 = "1bn2g3argjfiiq3arrdhplm0sx47p1g0yl9vz2xwgxsy7rsvd3yi"; + rev = "64a3a555b40d96faae488ed6cf5d0f8b38520891"; + sha256 = "1wmg72r6ydmrgiy4c8jv8fpgkf2wwxpyq7zv4a2bx4imhly4zccx"; fetchSubmodules = true; }; meta.homepage = "https://github.com/stevearc/oil.nvim/"; @@ -8884,12 +8908,12 @@ final: prev: orgmode = buildVimPlugin { pname = "orgmode"; - version = "2024-06-09"; + version = "2024-06-14"; src = fetchFromGitHub { owner = "nvim-orgmode"; repo = "orgmode"; - rev = "ac9a6e0eac2d298a27ab4f59511e60897cb61a08"; - sha256 = "1c0x4d33gnzpj7kwl0xp00v291g76zavq2bg3f07rzw6wlp4bnx9"; + rev = "cc51c1914e3f0bf20bd543a7176df5bab12ec247"; + sha256 = "1pr5fh2pr3awmxvaw0n811165nf9p3n0pp2cg4f8qs15y6ncbkq7"; }; meta.homepage = "https://github.com/nvim-orgmode/orgmode/"; }; @@ -8932,12 +8956,12 @@ final: prev: overseer-nvim = buildVimPlugin { pname = "overseer.nvim"; - version = "2024-06-09"; + version = "2024-06-14"; src = fetchFromGitHub { owner = "stevearc"; repo = "overseer.nvim"; - rev = "6271cab7ccc4ca840faa93f54440ffae3a3918bd"; - sha256 = "04i64hih371psp3abav4vv046fk9ykhr436rh3yxx3wcf46k74px"; + rev = "d78fa84c06d37b1eb3bd42b4b5467c7476e74589"; + sha256 = "130y8gjbyr3bg9l24s0iiiv40wpqq48axzvbjpraalca181zkhcd"; fetchSubmodules = true; }; meta.homepage = "https://github.com/stevearc/overseer.nvim/"; @@ -9028,7 +9052,7 @@ final: prev: }; parpar-nvim = buildVimPlugin { - pname = "parpar-nvim"; + pname = "parpar.nvim"; version = "2023-09-12"; src = fetchFromGitHub { owner = "dundalek"; @@ -9065,24 +9089,24 @@ final: prev: persisted-nvim = buildVimPlugin { pname = "persisted.nvim"; - version = "2024-06-03"; + version = "2024-06-15"; src = fetchFromGitHub { owner = "olimorris"; repo = "persisted.nvim"; - rev = "e50e0b65b06298a7b937a3d42550a4bc27d13ce7"; - sha256 = "18vz2i22zf9bl3svhzj4gb9zbpc1l8hxxdycz9xxw81g4nxm26mv"; + rev = "0a9eebf5cc92b1113a382a660ee73f21ffd62ae7"; + sha256 = "0gyacxix6m9wpzlm6a5p1s2aa9916750fd8chgkga8m3q34bdq9a"; }; meta.homepage = "https://github.com/olimorris/persisted.nvim/"; }; persistence-nvim = buildVimPlugin { pname = "persistence.nvim"; - version = "2024-05-16"; + version = "2024-06-12"; src = fetchFromGitHub { owner = "folke"; repo = "persistence.nvim"; - rev = "5fe077056c821aab41f87650bd6e1c48cd7dd047"; - sha256 = "1saanhqa9ldm1xlq5w28w72yxkwh60cay3cazi62zwmph0mgygp9"; + rev = "95d03ad5450389ad7dc2a0fab14ebb3d46bc2c96"; + sha256 = "1hmwrr15w8ybvy8m2jrn34n5dq2svklf498k7j431mw9y1knj68v"; }; meta.homepage = "https://github.com/folke/persistence.nvim/"; }; @@ -9463,11 +9487,11 @@ final: prev: rainbow-delimiters-nvim = buildVimPlugin { pname = "rainbow-delimiters.nvim"; - version = "2024-06-10"; + version = "2024-06-14"; src = fetchgit { url = "https://gitlab.com/HiPhish/rainbow-delimiters.nvim"; - rev = "073e45546acaff6b4248e3faea8e67b399d3e864"; - sha256 = "1q88b1l3rcvb4dcs95bxnsb1yqq9g3pg368lpp4pz6m18v78y2ip"; + rev = "5c9660801ce345cd3835e1947c12b54290ab7e71"; + sha256 = "0jm02hp7g5pqfrv2jr93gd4zz8v33w4cb220m7akq07gwhj7fag8"; }; meta.homepage = "https://gitlab.com/HiPhish/rainbow-delimiters.nvim"; }; @@ -9546,12 +9570,12 @@ final: prev: refactoring-nvim = buildVimPlugin { pname = "refactoring.nvim"; - version = "2024-03-15"; + version = "2024-06-15"; src = fetchFromGitHub { owner = "theprimeagen"; repo = "refactoring.nvim"; - rev = "d2786877c91aa409c824f27b4ce8a9f560dda60a"; - sha256 = "0s0pd2b9hnz4rbgva1xad7lzg8z8mq7j8x15ppnrw6bplx5m35jd"; + rev = "e6b10b2346bd7e469a5f17099775ad906da153ae"; + sha256 = "1m0ah5f1w18g7y78ra78yczzpdb4giwk9hsig3379f26xz5fknp2"; }; meta.homepage = "https://github.com/theprimeagen/refactoring.nvim/"; }; @@ -9570,12 +9594,12 @@ final: prev: remember-nvim = buildVimPlugin { pname = "remember.nvim"; - version = "2023-06-12"; + version = "2024-06-13"; src = fetchFromGitHub { owner = "vladdoster"; repo = "remember.nvim"; - rev = "b7613e14692478a0428dc69ca380b6fbb2448e60"; - sha256 = "1kki1v7bdixkyn53ryqsz4r53j68s9csfdxg8ffchkd7qamwzlsw"; + rev = "1b5176283bcf91d052b5755d9ba6e8ce14dfc95b"; + sha256 = "128ci86rypdnmv2c93qj04pmhdx70b7vdcnzgcr417dmn5212s2l"; }; meta.homepage = "https://github.com/vladdoster/remember.nvim/"; }; @@ -9652,6 +9676,18 @@ final: prev: meta.homepage = "https://github.com/mfukar/robotframework-vim/"; }; + rocks-nvim = buildNeovimPlugin { + pname = "rocks.nvim"; + version = "2024-06-19"; + src = fetchFromGitHub { + owner = "nvim-neorocks"; + repo = "rocks.nvim"; + rev = "6737e01a76eaaae06d11b45c8b5b774fa97c283b"; + sha256 = "0vl6rm3rv1730iw3bwzrwjsgr1hw5h4ksdgpir5spd3vqj7i97lz"; + }; + meta.homepage = "https://github.com/nvim-neorocks/rocks.nvim/"; + }; + ron-vim = buildVimPlugin { pname = "ron.vim"; version = "2022-08-19"; @@ -9726,12 +9762,12 @@ final: prev: rustaceanvim = buildNeovimPlugin { pname = "rustaceanvim"; - version = "2024-06-07"; + version = "2024-06-18"; src = fetchFromGitHub { owner = "mrcjkb"; repo = "rustaceanvim"; - rev = "00a9508e8f95b8f8f9f60125a2082a53e0740987"; - sha256 = "1mi11cfcg19yz52g4qz2g47647awq6lylcw3a8rn8bmfis8ph33f"; + rev = "14a5a4bdf23d1971d1a6386b73b89e57590a5e7d"; + sha256 = "098zlwlrdw5icvns5a7qp4bl2ly1imv2fm3981i9wqdvvvzqmn3k"; }; meta.homepage = "https://github.com/mrcjkb/rustaceanvim/"; }; @@ -9762,12 +9798,12 @@ final: prev: satellite-nvim = buildVimPlugin { pname = "satellite.nvim"; - version = "2024-02-16"; + version = "2024-06-11"; src = fetchFromGitHub { owner = "lewis6991"; repo = "satellite.nvim"; - rev = "40eb89743e3439c66192abfc31eb3280622a5d3c"; - sha256 = "1zi3m7zhjl9naggmq9z81x9lfvahjs9bmp43d6b1p1idxa716pij"; + rev = "777ed56e1ef45ec808df701730b6597fc4fb0fbc"; + sha256 = "16byf6fa7amxad3gkwi2xyb2i5q5g7c6q0phmf15pqc1skxnr0nk"; }; meta.homepage = "https://github.com/lewis6991/satellite.nvim/"; }; @@ -9955,24 +9991,24 @@ final: prev: slimv = buildVimPlugin { pname = "slimv"; - version = "2023-07-01"; + version = "2024-06-17"; src = fetchFromGitHub { owner = "kovisoft"; repo = "slimv"; - rev = "f4775f044cbb28ff4a444143cd2e6712b3694f21"; - sha256 = "1k67h7i07xab8f5a0qn0psrmj1xbm42w03gh5kmal8ay3maqvscd"; + rev = "e2c2bbb698c89de8c8aa91ad9ab1fd40ef6add00"; + sha256 = "0da4hcqb2936jby7zx84i0i2qxxg4wfkcfx4xx1fa92bgv79s0mx"; }; meta.homepage = "https://github.com/kovisoft/slimv/"; }; smart-splits-nvim = buildVimPlugin { pname = "smart-splits.nvim"; - version = "2024-06-07"; + version = "2024-06-15"; src = fetchFromGitHub { owner = "mrjones2014"; repo = "smart-splits.nvim"; - rev = "d99162711fa619595b8cb0e1f0981e3d301debc9"; - sha256 = "0lmwrsxxj0sys4kkz1ayi4rmkjk030bhnhkbic3jlzkj1kla2fwp"; + rev = "3d9fa9e4b31c30d6b328f2447a4dc7dceffbc2ea"; + sha256 = "1pvi03f98f6lys6l3jlra9l95dpavdc9y8ghl91mlwvlglrnwjrk"; }; meta.homepage = "https://github.com/mrjones2014/smart-splits.nvim/"; }; @@ -10316,12 +10352,12 @@ final: prev: statuscol-nvim = buildVimPlugin { pname = "statuscol.nvim"; - version = "2024-06-05"; + version = "2024-06-15"; src = fetchFromGitHub { owner = "luukvbaal"; repo = "statuscol.nvim"; - rev = "2eaca29ef3079dedc484dbd7824ad723e8d35676"; - sha256 = "0mnqwy0mnl1wh4pp73y38kbxrwnd53wvci2zy7pdlyh7damsq31i"; + rev = "d6f7f5437c5404d958b88bb73e0721b1c0e09223"; + sha256 = "0qv4prxfgzn740jjhscafi7dgiirm1w4h2f4ph74j7x28yk94dlk"; }; meta.homepage = "https://github.com/luukvbaal/statuscol.nvim/"; }; @@ -10400,12 +10436,12 @@ final: prev: sved = buildVimPlugin { pname = "sved"; - version = "2024-05-28"; + version = "2024-06-18"; src = fetchFromGitHub { owner = "peterbjorgensen"; repo = "sved"; - rev = "2609d23030a5149b47e49cfabe53196d65ba80bf"; - sha256 = "1b1njhm18j6daljn08a58rfyjwywh2kvrhynj6ip1riqzfznvzlb"; + rev = "3edf1030c28e3a5e3b01aea7f94fa04ac4f0e48a"; + sha256 = "15idmbzbgmvh75l75y6zkhpa6f72978rxqflfr08apz7g56zl9kl"; }; meta.homepage = "https://github.com/peterbjorgensen/sved/"; }; @@ -10727,12 +10763,12 @@ final: prev: telescope-frecency-nvim = buildVimPlugin { pname = "telescope-frecency.nvim"; - version = "2024-06-01"; + version = "2024-06-19"; src = fetchFromGitHub { owner = "nvim-telescope"; repo = "telescope-frecency.nvim"; - rev = "1f2e9b07ac7f927f36c17313071cc12759670767"; - sha256 = "0m0bjxdxp6av4i86s0q3ji2dmxfyid1g32h76z19n4dwh9827fgy"; + rev = "78570e237c8b2494dd74ffe196fbd01d0c9e5460"; + sha256 = "1vsfsi39i8f8x6cbsrq491s54p1gh8fh3a0vjgik7x07a9i21l6h"; }; meta.homepage = "https://github.com/nvim-telescope/telescope-frecency.nvim/"; }; @@ -10957,12 +10993,12 @@ final: prev: telescope-nvim = buildNeovimPlugin { pname = "telescope.nvim"; - version = "2024-06-09"; + version = "2024-06-15"; src = fetchFromGitHub { owner = "nvim-telescope"; repo = "telescope.nvim"; - rev = "f12b15e1b3a33524eb06a1ae7bc852fb1fd92197"; - sha256 = "12r9sqrwxsmpc9gvckp7n4j55127hkwg9788chjgjrszj90sj8n2"; + rev = "c392f1b78eaaf870ca584bd698e78076ed301b26"; + sha256 = "14k0z9k0d8krs50filg8d38fkcpxv4gy9lilgfj2wrvssd6c9vqy"; }; meta.homepage = "https://github.com/nvim-telescope/telescope.nvim/"; }; @@ -11161,12 +11197,12 @@ final: prev: tmux-nvim = buildVimPlugin { pname = "tmux.nvim"; - version = "2024-06-08"; + version = "2024-06-17"; src = fetchFromGitHub { owner = "aserowy"; repo = "tmux.nvim"; - rev = "3787752613777b96111ba02e24cbcfdcc6ebd57a"; - sha256 = "1wlx6lmw2nkijja530yslqdv8dwqjd8sqasfgmchhpd95fpfb7ny"; + rev = "da618e075f42793400c3ee1e59ef3ebada2cb23c"; + sha256 = "00jbds0fg8aqdfq2swjlch22x6j2ispmj5q11jqgp0h99xdxmvr1"; }; meta.homepage = "https://github.com/aserowy/tmux.nvim/"; }; @@ -11185,12 +11221,12 @@ final: prev: todo-comments-nvim = buildVimPlugin { pname = "todo-comments.nvim"; - version = "2024-06-10"; + version = "2024-06-12"; src = fetchFromGitHub { owner = "folke"; repo = "todo-comments.nvim"; - rev = "9c104cf7868f1c739b43a07e5593666cc9de2d67"; - sha256 = "0js766asdwhimcq1yr1ql02d5jyrj49178cq2yjpi5bbn61b163x"; + rev = "51e10f838e84b4756c16311d0b1ef0972c6482d2"; + sha256 = "06kbz52ddr0nkvzm92c71wghm1kngwa3bnn329k6wl13qy2j7i09"; }; meta.homepage = "https://github.com/folke/todo-comments.nvim/"; }; @@ -11222,12 +11258,12 @@ final: prev: tokyonight-nvim = buildVimPlugin { pname = "tokyonight.nvim"; - version = "2024-06-10"; + version = "2024-06-13"; src = fetchFromGitHub { owner = "folke"; repo = "tokyonight.nvim"; - rev = "719713b0515c56fcb66ed2c1acd385d3e1de7895"; - sha256 = "1kb13ymdpzdcclj3clwqr8ah7np9s81zcp4ddr73ag3fngddasgs"; + rev = "81c867c5f638597a82c82094dcb90ed42444dabc"; + sha256 = "0bq6yjzv7sza4f2mp5x7bv19pg0mj5j6xh3crz4q20l16f2i3hag"; }; meta.homepage = "https://github.com/folke/tokyonight.nvim/"; }; @@ -11319,12 +11355,12 @@ final: prev: trouble-nvim = buildVimPlugin { pname = "trouble.nvim"; - version = "2024-06-11"; + version = "2024-06-14"; src = fetchFromGitHub { owner = "folke"; repo = "trouble.nvim"; - rev = "483eb2d7590b3b87cf159e3bdf96170eaaa361e8"; - sha256 = "1n5xmx6w5vza45flh5zv4gzhacj3lc00ycz8fral7fh82hqb8igf"; + rev = "58a3acfc6d8d819324dab4c87068596319032e64"; + sha256 = "0vs7s7byz80mdww86icvgk7ksvbbgm67afiw8vn19ghf2hr78s8r"; }; meta.homepage = "https://github.com/folke/trouble.nvim/"; }; @@ -11403,12 +11439,12 @@ final: prev: typescript-tools-nvim = buildVimPlugin { pname = "typescript-tools.nvim"; - version = "2024-01-16"; + version = "2024-06-18"; src = fetchFromGitHub { owner = "pmizio"; repo = "typescript-tools.nvim"; - rev = "c43d9580c3ff5999a1eabca849f807ab33787ea7"; - sha256 = "1af90ydixj8lpm0q6kkd7yv61wpyd572vgb44a4jpfbsaxhl75wj"; + rev = "3f942ec187523d1d82f813106ceea9be9dac5287"; + sha256 = "0yr8vmfq6rm7xd39jig1k6fjqhzb7pi0x9iy9mv5vvixj4drz21i"; }; meta.homepage = "https://github.com/pmizio/typescript-tools.nvim/"; }; @@ -11499,12 +11535,12 @@ final: prev: unison = buildVimPlugin { pname = "unison"; - version = "2024-06-11"; + version = "2024-06-18"; src = fetchFromGitHub { owner = "unisonweb"; repo = "unison"; - rev = "a45fc88fb1a7fd3d00d7fc6b16ece53dcc386d07"; - sha256 = "1rr9b5014y5rwwiajanjd02wxws83220sm7cfcrln2cw9bn4ld69"; + rev = "e354912fe85c39ae0b148562ddf31aa622e24638"; + sha256 = "1k17nkcdx5xlsw2r6izsyh1fjjfa9mj1v77yd00wznibczd9jnkq"; }; meta.homepage = "https://github.com/unisonweb/unison/"; }; @@ -11619,12 +11655,12 @@ final: prev: vim-DetectSpellLang = buildVimPlugin { pname = "vim-DetectSpellLang"; - version = "2024-06-10"; + version = "2024-06-15"; src = fetchFromGitHub { owner = "konfekt"; repo = "vim-DetectSpellLang"; - rev = "548714ade77d1c062b3a876deddb05fd8718131e"; - sha256 = "12w5lmr8c1fq4bjajq17f9hzg5mna98qbn3f9pmc116q15r7p69w"; + rev = "c5ae86e2b010fc4e89d16ae0512b5f01a38dfb3c"; + sha256 = "1m0r0vazqrfg0ap4q4iirgf8j75d4hrn9xa3v75kq5ab0agcihgr"; }; meta.homepage = "https://github.com/konfekt/vim-DetectSpellLang/"; }; @@ -11943,12 +11979,12 @@ final: prev: vim-airline = buildVimPlugin { pname = "vim-airline"; - version = "2024-05-20"; + version = "2024-06-16"; src = fetchFromGitHub { owner = "vim-airline"; repo = "vim-airline"; - rev = "16c1638f93f93fad41da8cb6eef2bcd8eed0a57a"; - sha256 = "13pxm4mh1sar6332z7w0cimbdcm5hg8yi7p86byg8hp1wwpm0g91"; + rev = "02894b6ef4752afd8579fc837aec5fb4f62409f7"; + sha256 = "07jxqibg8zdir3w5lq2ibjvf6zw9b9386y9pwybgzg91c9pvd9xk"; }; meta.homepage = "https://github.com/vim-airline/vim-airline/"; }; @@ -12207,12 +12243,12 @@ final: prev: vim-better-whitespace = buildVimPlugin { pname = "vim-better-whitespace"; - version = "2024-01-13"; + version = "2024-06-12"; src = fetchFromGitHub { owner = "ntpeters"; repo = "vim-better-whitespace"; - rev = "029f35c783f1b504f9be086b9ea757a36059c846"; - sha256 = "189s0bhavrsv5im810cdl2723wfjr0k267fl83m8zy5mc8ir156k"; + rev = "86a0579b330b133b8181b8e088943e81c26a809e"; + sha256 = "19717vah1j37b2yqyk3wbwv71ffsh6qgvjzxzgvfljnp8ib0zrls"; }; meta.homepage = "https://github.com/ntpeters/vim-better-whitespace/"; }; @@ -13167,12 +13203,12 @@ final: prev: vim-flog = buildVimPlugin { pname = "vim-flog"; - version = "2024-05-25"; + version = "2024-06-13"; src = fetchFromGitHub { owner = "rbong"; repo = "vim-flog"; - rev = "2f0836128cac9368176a564b237382d1766723f0"; - sha256 = "1nwxia9dcj7kqai1ig3a1z1bkzk6dx56bdr1g070kn5pli7w051b"; + rev = "255631abf7ea132393fc7dd745d6911c37ac6a4c"; + sha256 = "0k92fs7wq1yhbwgf29awv70k06nb36x375b4rjwc4sf559i223mc"; }; meta.homepage = "https://github.com/rbong/vim-flog/"; }; @@ -13227,12 +13263,12 @@ final: prev: vim-fugitive = buildVimPlugin { pname = "vim-fugitive"; - version = "2024-05-19"; + version = "2024-06-12"; src = fetchFromGitHub { owner = "tpope"; repo = "vim-fugitive"; - rev = "4f59455d2388e113bd510e85b310d15b9228ca0d"; - sha256 = "0q2ymynp6xjha14g52i01in1lqkhkdvcjl93fp2zqjzcg5pns8wz"; + rev = "64d6cafb9dcbacce18c26d7daf617ebb96b273f3"; + sha256 = "1ddab7xflb08gy168042k8w35z84hdvrbz5kx37v96skayq30rni"; }; meta.homepage = "https://github.com/tpope/vim-fugitive/"; }; @@ -13359,12 +13395,12 @@ final: prev: vim-glsl = buildVimPlugin { pname = "vim-glsl"; - version = "2022-05-10"; + version = "2024-06-15"; src = fetchFromGitHub { owner = "tikhomirov"; repo = "vim-glsl"; - rev = "bfd330a271933c3372fcfa8ce052970746c8e9dd"; - sha256 = "0nqpg95mh5z0wmiqvc8cfzq1gb99ximc1gbz9bv3x7239f66z5vn"; + rev = "40dd0b143ef93f3930a8a409f60c1bb85e28b727"; + sha256 = "0m7c0z7f4zz4vnl0ls71grnish7m07kqz9n2jsrm6hsq5pjn36bp"; }; meta.homepage = "https://github.com/tikhomirov/vim-glsl/"; }; @@ -13383,12 +13419,12 @@ final: prev: vim-go = buildVimPlugin { pname = "vim-go"; - version = "2024-06-05"; + version = "2024-06-11"; src = fetchFromGitHub { owner = "fatih"; repo = "vim-go"; - rev = "b5fc46841e818dc118abb5da650b00bd93355290"; - sha256 = "1668szf6jdz1y4nmdb61pys2znz2512hnvky15w2kdhb3mq6nl0j"; + rev = "665ef24144b748b842a0a27c237e63f3447f901a"; + sha256 = "1yh9phdrax4b5v9bb37n8bzxbi6a8ca422c90f73r9cwgvfx4i2v"; }; meta.homepage = "https://github.com/fatih/vim-go/"; }; @@ -13985,12 +14021,12 @@ final: prev: vim-just = buildVimPlugin { pname = "vim-just"; - version = "2024-06-05"; + version = "2024-06-17"; src = fetchFromGitHub { owner = "NoahTheDuke"; repo = "vim-just"; - rev = "152d4f62e16140183d6b4500b689f6bf851a6029"; - sha256 = "02dxasq5yqqvhk32f2pzsmr2akc1l896qbswm8hazxd0bqjl3i81"; + rev = "5ad2c6b625d40d929d58cddeca9c459d5f380755"; + sha256 = "0bmm3z4njnajv1qzqam9i9lfsaxfw8n792wzdyg7yklp534zaxxn"; }; meta.homepage = "https://github.com/NoahTheDuke/vim-just/"; }; @@ -14249,12 +14285,12 @@ final: prev: vim-lsp-settings = buildVimPlugin { pname = "vim-lsp-settings"; - version = "2024-06-10"; + version = "2024-06-13"; src = fetchFromGitHub { owner = "mattn"; repo = "vim-lsp-settings"; - rev = "2cad696eb76755ff00415d97ce4bd5c82d6e2fb3"; - sha256 = "0bkjg5w0856621rbip2wjqwpzxpfpfn00a15w54g7am56pjq4s7w"; + rev = "3debb34bf6fac8e1cb195d9e89a23b7ea98bee47"; + sha256 = "0pdw13m2xn4fih0kk9acbhlgq660a7p6c7ppp4jb310jf0l3xg3i"; }; meta.homepage = "https://github.com/mattn/vim-lsp-settings/"; }; @@ -15006,12 +15042,12 @@ final: prev: vim-plug = buildVimPlugin { pname = "vim-plug"; - version = "2024-06-01"; + version = "2024-06-19"; src = fetchFromGitHub { owner = "junegunn"; repo = "vim-plug"; - rev = "db37a8a29a61a55808fb7c6e1af63940d5478199"; - sha256 = "065xlfp4rfqsqdsns6gxjxbdq2aj38xra34k26rjrhma9lll3alq"; + rev = "d863d0783236e1a46291f7791347740891186154"; + sha256 = "0h8np5gfqa1r2089sxmrpfg5rfggsms3d688c2d7fb9vsba8ghhi"; }; meta.homepage = "https://github.com/junegunn/vim-plug/"; }; @@ -15126,12 +15162,12 @@ final: prev: vim-prosession = buildVimPlugin { pname = "vim-prosession"; - version = "2024-03-07"; + version = "2024-06-13"; src = fetchFromGitHub { owner = "dhruvasagar"; repo = "vim-prosession"; - rev = "1cb2eadde0b79f49eb4b5a54cc78735aea33cbca"; - sha256 = "01ky6lgxcb9ghgmd8bw0ja6rvd0hsds8fzdpa7dn8j6x7yl4mcbv"; + rev = "4b8323d4e9b74afe9132a34b2d7ea6cfa9461550"; + sha256 = "0xhbqphjldw5ygxmblx9r2zgbda1dgc2h0py6h05ss43cdvzikwa"; }; meta.homepage = "https://github.com/dhruvasagar/vim-prosession/"; }; @@ -15678,12 +15714,12 @@ final: prev: vim-snipmate = buildVimPlugin { pname = "vim-snipmate"; - version = "2024-06-06"; + version = "2024-06-16"; src = fetchFromGitHub { owner = "garbas"; repo = "vim-snipmate"; - rev = "8f785fd0bcdc43e5e5402eb15f1cf287ace597dd"; - sha256 = "1g9vdmq4dknhn5alr0lgrgcjv26m1vyzspsfz2mdyw81lc5jnsp2"; + rev = "673e686c46149d947283620847ea64deb2a0be6c"; + sha256 = "08j897l9gpna5x969mgc137vy8ajdq7i8mvz2xwiaf5x13b8db4c"; }; meta.homepage = "https://github.com/garbas/vim-snipmate/"; }; @@ -15750,12 +15786,12 @@ final: prev: vim-spirv = buildVimPlugin { pname = "vim-spirv"; - version = "2024-06-11"; + version = "2024-06-19"; src = fetchFromGitHub { owner = "kbenzie"; repo = "vim-spirv"; - rev = "a2c9040c868d64f1ae92954055cda9719d14b21b"; - sha256 = "0adh47z8x86pa3hyvvlb3g7i947xgfmwz45np70ijyrjkrzg96yp"; + rev = "64b8125fdca0e67cfe7c415f133809a4d23eb8b5"; + sha256 = "01r9wz4sc7qlaibi2hhrymcgzrfjchif3cn9w1q71prbvchjhpnm"; }; meta.homepage = "https://github.com/kbenzie/vim-spirv/"; }; @@ -15942,12 +15978,12 @@ final: prev: vim-teal = buildVimPlugin { pname = "vim-teal"; - version = "2021-01-05"; + version = "2024-06-19"; src = fetchFromGitHub { owner = "teal-language"; repo = "vim-teal"; - rev = "d2aa107b257879e774680792a2aebaf9cd5742e0"; - sha256 = "02ag8vhmh1zj99vhvqslfnasw9i5psx396r7qyag0yyzyp9ynzkc"; + rev = "912602f9fab602234a55ad8b0f5f590f657d3e66"; + sha256 = "0lqr6ss3pvsd9q3w88vy3qf456939crddv17jhc1ynib90ngb59c"; }; meta.homepage = "https://github.com/teal-language/vim-teal/"; }; @@ -15991,12 +16027,12 @@ final: prev: vim-test = buildVimPlugin { pname = "vim-test"; - version = "2024-05-30"; + version = "2024-06-15"; src = fetchFromGitHub { owner = "vim-test"; repo = "vim-test"; - rev = "6acc7d96487abaaa57a19b0d43efaea6633d6bb7"; - sha256 = "02v57iljw8w42gxg31z48iiq38pgyygmniq1qbaxiyh8rvyvcrq9"; + rev = "79c14672b0bfec6f92c626dc331326fdbed62b4f"; + sha256 = "0vbfnqggh2lwcpfx110phlasmdqq66fdjcgvanydj1vqpvfn8fsa"; }; meta.homepage = "https://github.com/vim-test/vim-test/"; }; @@ -16171,12 +16207,12 @@ final: prev: vim-tpipeline = buildVimPlugin { pname = "vim-tpipeline"; - version = "2024-04-12"; + version = "2024-06-13"; src = fetchFromGitHub { owner = "vimpostor"; repo = "vim-tpipeline"; - rev = "5dd3832bd6e239feccb11cadca583cdcf9d5bda1"; - sha256 = "14f4fjjjjml3rbh99385xzkkcfqa7awa9bjc191qvvvycqipp0hw"; + rev = "f59f144b73e79aae7a73bb86bf527e79ad86de8f"; + sha256 = "0h16bs65ic5iwry8mq22v4xkn1wc2a6xin0vqn5qnlg38q7fgpn1"; }; meta.homepage = "https://github.com/vimpostor/vim-tpipeline/"; }; @@ -16507,12 +16543,12 @@ final: prev: vim-xkbswitch = buildVimPlugin { pname = "vim-xkbswitch"; - version = "2024-03-12"; + version = "2024-06-19"; src = fetchFromGitHub { owner = "lyokha"; repo = "vim-xkbswitch"; - rev = "42ef558e792e35600e608d1cd7ad8a760f157269"; - sha256 = "0aim4bdznk4iklz67nrbw67x3vjv18nmiqy2730b75kl88v0n6iw"; + rev = "bcd79dd6a1b74efe1a16c70fe6a06bfc6a99e543"; + sha256 = "1ym08zy9lbqakflbif48kvgirfd4fajpaynmx8wgp6q2xhks6xvd"; }; meta.homepage = "https://github.com/lyokha/vim-xkbswitch/"; }; @@ -16736,12 +16772,12 @@ final: prev: vimtex = buildVimPlugin { pname = "vimtex"; - version = "2024-06-07"; + version = "2024-06-13"; src = fetchFromGitHub { owner = "lervag"; repo = "vimtex"; - rev = "0587a064f675fd85cdfb8a76d6a3ff698af3944b"; - sha256 = "0wg89y12fir6wndcj7niq454nh0d65lv55r24jkcb6gfm401jvpp"; + rev = "8ed94566e6fe3f5b163131dc374d224d2d320db7"; + sha256 = "13na944xyy8cj6pck6af4p9hhrr3811pa43zmmj42bxrf5kpbqds"; }; meta.homepage = "https://github.com/lervag/vimtex/"; }; @@ -16820,12 +16856,12 @@ final: prev: vista-vim = buildVimPlugin { pname = "vista.vim"; - version = "2024-04-06"; + version = "2024-06-11"; src = fetchFromGitHub { owner = "liuchengxu"; repo = "vista.vim"; - rev = "04fa99afe865b16324af94fd8a8391121117d8f7"; - sha256 = "0gjma1ba0ds0dznhqdajmhib1i49b08iv7hf0c4vjz833kcjagqj"; + rev = "c07585b588071adc8e9670becadb89307153e4d1"; + sha256 = "0gpa38jn41pa550l30kvb5wb04bac45sl4dxbwhqhnay42wc90fk"; }; meta.homepage = "https://github.com/liuchengxu/vista.vim/"; }; @@ -16916,12 +16952,12 @@ final: prev: wiki-vim = buildVimPlugin { pname = "wiki.vim"; - version = "2024-06-07"; + version = "2024-06-17"; src = fetchFromGitHub { owner = "lervag"; repo = "wiki.vim"; - rev = "5943633f66d8c50834baebd0354d8248df171be6"; - sha256 = "19fm7s3qyixfgpj3hpd157s8f8sgq1199rdxzbvq2yvg6h9wbwa1"; + rev = "da5f1e0a5acd70d4e44c54b4d6286fd8f97742ab"; + sha256 = "0aiy18yw2kkj1xb7ixlw86xlxpn1v1pqa19d05kr4jnbabdajcr4"; }; meta.homepage = "https://github.com/lervag/wiki.vim/"; }; @@ -17169,14 +17205,14 @@ final: prev: zenbones-nvim = buildVimPlugin { pname = "zenbones.nvim"; - version = "2024-05-21"; + version = "2024-06-16"; src = fetchFromGitHub { - owner = "mcchrish"; + owner = "zenbones-theme"; repo = "zenbones.nvim"; - rev = "5746d0277439fe264108a2ecace83f09f1b57e1f"; - sha256 = "0wkc3flhb961q7h09zy8lbq9j851s6fx159bc7gbipx4p33l80kb"; + rev = "e9ba8305f65524f9355515cdd8704b2c6ba2def6"; + sha256 = "0bmj5b4n0rj7i1nh9lccszqv3jbcdcjw5gi6v010d3cf312rkda6"; }; - meta.homepage = "https://github.com/mcchrish/zenbones.nvim/"; + meta.homepage = "https://github.com/zenbones-theme/zenbones.nvim/"; }; zenburn = buildVimPlugin { @@ -17253,12 +17289,12 @@ final: prev: catppuccin-nvim = buildVimPlugin { pname = "catppuccin-nvim"; - version = "2024-06-10"; + version = "2024-06-14"; src = fetchFromGitHub { owner = "catppuccin"; repo = "nvim"; - rev = "cc8e290d4c0d572171243087f8541e49be2c8764"; - sha256 = "0h8kkn27siyifhynw81h8ah2jsvpz3h7xvxzzwms7zgxhsj94k0r"; + rev = "c0bea773a09e49e123136b099bce9ddc1bf395d2"; + sha256 = "15ccqv7r382rk8l50ims0a9m5kn4kzgd3bar5427w12skayp0d09"; }; meta.homepage = "https://github.com/catppuccin/nvim/"; }; @@ -17277,24 +17313,24 @@ final: prev: dracula-vim = buildVimPlugin { pname = "dracula-vim"; - version = "2024-04-14"; + version = "2024-06-13"; src = fetchFromGitHub { owner = "dracula"; repo = "vim"; - rev = "28874a1e9d583eb0b1dfebb9191445b822812ea3"; - sha256 = "1answqiln7pg1f0cpgknjrnnzk4cslhn19vnv2hvji9xm45lvvbv"; + rev = "ada471d684d4acfe803c4e033d7c3ae5d7252db6"; + sha256 = "1w1bxg532l1khgb285xs4y6l40bj4dq0kdh6iwfihw6x0mqsrv1j"; }; meta.homepage = "https://github.com/dracula/vim/"; }; embark-vim = buildVimPlugin { pname = "embark-vim"; - version = "2024-02-14"; + version = "2024-06-17"; src = fetchFromGitHub { owner = "embark-theme"; repo = "vim"; - rev = "d0ce0502c83864721c92d0723dde10f38a09c714"; - sha256 = "01bx2hkxmqi9401n327m9k63m8n2jyqklgl3xkv0w3h0a16wc7h6"; + rev = "2ab955cb0b5eaf0b00cc5064234064f02822f458"; + sha256 = "0ncr3kf7s0j2ghr0321vajsfphs4cp710xxrwdhphfxdpzxjlsbw"; }; meta.homepage = "https://github.com/embark-theme/vim/"; }; @@ -17349,12 +17385,12 @@ final: prev: nightfly = buildVimPlugin { pname = "nightfly"; - version = "2024-06-11"; + version = "2024-06-19"; src = fetchFromGitHub { owner = "bluz71"; repo = "vim-nightfly-colors"; - rev = "1b33693163db64ebba44eb22f30a7fe4c1c467d9"; - sha256 = "055rivg97ccc3f2w4vhq93i9rqrhxf5cqvdwqp9cqxiaab6fhnga"; + rev = "b20ee4855bd3cb9fbe0615cf0e27bbb8b04df13e"; + sha256 = "1wcvnx0s328md2zil1gwxqsl19jin5vmpxvzajjx52yxsrgm0qrm"; }; meta.homepage = "https://github.com/bluz71/vim-nightfly-colors/"; }; @@ -17373,12 +17409,12 @@ final: prev: nvchad-ui = buildVimPlugin { pname = "nvchad-ui"; - version = "2024-06-09"; + version = "2024-06-15"; src = fetchFromGitHub { owner = "nvchad"; repo = "ui"; - rev = "dff8115670efc5051e5db9fef4660b2ceae3a26a"; - sha256 = "032chcri6hi9x01lpyi1qdsxw8qiw2nnpnzpsf1vcgydnkfism20"; + rev = "75a0044e5f4d164d93557fd49863e088f0ecf749"; + sha256 = "1md8gsibb1224df6qi2vnyxp5ja51vfppdziply33zdlh7qa6ycc"; }; meta.homepage = "https://github.com/nvchad/ui/"; }; @@ -17480,30 +17516,4 @@ final: prev: }; - nvim-genghis = buildVimPlugin { - pname = "nvim-genghis"; - version = "2024-05-21"; - src = fetchFromGitHub { - owner = "chrisgrieser"; - repo = "nvim-genghis"; - rev = "7ed82d0d0513946bbc678f326e5750c79a942351"; - sha256 = "sha256-R3YHrcpRJ8bbVctKTWQbouyCYcbKpQ2Sz6NWDOkqLYI="; - }; - meta.homepage = "https://github.com/chrisgrieser/nvim-genghis"; - }; - - - git-prompt-string-lualine-nvim = buildVimPlugin { - pname = "git-prompt-string-lualine-nvim"; - version = "2024-04-22"; - src = fetchFromGitHub { - owner = "mikesmithgh"; - repo = "git-prompt-string-lualine.nvim"; - rev = "5426ce15462abe4faf5cd76db7476b2686120fe9"; - sha256 = "sha256-BM1AEpIcOd5nr4N/ZoxK9NodiUbUuY9hw7n/wRTXzzk="; - }; - meta.homepage = "https://github.com/mikesmithgh/git-prompt-string-lualine.nvim"; - }; - - } diff --git a/pkgs/applications/editors/vim/plugins/nvim-treesitter/generated.nix b/pkgs/applications/editors/vim/plugins/nvim-treesitter/generated.nix index e5369b8539640..c4a0aea589992 100644 --- a/pkgs/applications/editors/vim/plugins/nvim-treesitter/generated.nix +++ b/pkgs/applications/editors/vim/plugins/nvim-treesitter/generated.nix @@ -303,12 +303,12 @@ }; corn = buildGrammar { language = "corn"; - version = "0.0.0+rev=604d73c"; + version = "0.0.0+rev=4646547"; src = fetchFromGitHub { owner = "jakestanger"; repo = "tree-sitter-corn"; - rev = "604d73c38d4c28ca68e9e441ffd405d68cb63051"; - hash = "sha256-ewpLp+se6XTY8aRoz247YlouS1p/kaS7CqVFu412C+Q="; + rev = "464654742cbfd3a3de560aba120998f1d5dfa844"; + hash = "sha256-fI7S+TkI2ofQ/Hal4CJ2HAaeQrjOju1rgJvyc6P3t9k="; }; meta.homepage = "https://github.com/jakestanger/tree-sitter-corn"; }; @@ -325,12 +325,12 @@ }; cpp = buildGrammar { language = "cpp"; - version = "0.0.0+rev=9d412ba"; + version = "0.0.0+rev=7ce8946"; src = fetchFromGitHub { owner = "tree-sitter"; repo = "tree-sitter-cpp"; - rev = "9d412ba7e597fe158f209da33e60f31b1f0df967"; - hash = "sha256-mMHNRKhfhI+OXmNOf1nlVr7JWmJ8BJMOJdaXqv3pk9w="; + rev = "7ce8946cae4bb25adebe5b50394f702beb007026"; + hash = "sha256-haU0fXNwYh3YaP8VMY1krRHxrGvNkDV4hMcxp5z9TVA="; }; meta.homepage = "https://github.com/tree-sitter/tree-sitter-cpp"; }; @@ -447,12 +447,12 @@ }; djot = buildGrammar { language = "djot"; - version = "0.0.0+rev=ea851b9"; + version = "0.0.0+rev=87bf828"; src = fetchFromGitHub { owner = "treeman"; repo = "tree-sitter-djot"; - rev = "ea851b9cf1a71e475f4e2ac4dc03609a1b9ca56d"; - hash = "sha256-6vekPB1IufGuMhX+n2Ve9EMXqZdX6FlBuI/lh/8/msw="; + rev = "87bf82874c86dcf563f5521069d603ed50e5f0cc"; + hash = "sha256-abAEVbS9hqc1uHx6NxXRBA2SLrCL3gBBPLgAK9Tz3G4="; }; meta.homepage = "https://github.com/treeman/tree-sitter-djot"; }; @@ -503,12 +503,12 @@ }; earthfile = buildGrammar { language = "earthfile"; - version = "0.0.0+rev=b267228"; + version = "0.0.0+rev=b5bdcb5"; src = fetchFromGitHub { owner = "glehmann"; repo = "tree-sitter-earthfile"; - rev = "b2672286174c078eb80cdffc61375d0364e7fafb"; - hash = "sha256-Vyme1ghs61lyitnwukccXbzAOeuiPbS1vvrvT9y1rbs="; + rev = "b5bdcb5813ce0e582fbd8e03eb42c80d3cc8984e"; + hash = "sha256-fhHu8kniYOLhrlHLgfP1NHtBxURrM7GNn51zmPNcTIU="; }; meta.homepage = "https://github.com/glehmann/tree-sitter-earthfile"; }; @@ -1032,12 +1032,12 @@ }; hcl = buildGrammar { language = "hcl"; - version = "0.0.0+rev=e936d3f"; + version = "0.0.0+rev=422cbe1"; src = fetchFromGitHub { owner = "MichaHoffmann"; repo = "tree-sitter-hcl"; - rev = "e936d3fef8bac884661472dce71ad82284761eb1"; - hash = "sha256-lcvs4auZrMb1f9ocrAnLVxX8JnvrPT18LsJBqoNG9Oo="; + rev = "422cbe1d93a8ae3847744b664041fc76876babcd"; + hash = "sha256-PrA/F8IIJDzr2HjX9NToApzbM7nO+NesMcKhOQyOyNU="; }; meta.homepage = "https://github.com/MichaHoffmann/tree-sitter-hcl"; }; @@ -1165,12 +1165,12 @@ }; hyprlang = buildGrammar { language = "hyprlang"; - version = "0.0.0+rev=e5da7d0"; + version = "0.0.0+rev=c9012d6"; src = fetchFromGitHub { owner = "luckasRanarison"; repo = "tree-sitter-hyprlang"; - rev = "e5da7d0aa44403153e0394d87d9edea4e5bd6609"; - hash = "sha256-jKp880I0XkApB3aFINAPfwn1txuMwalh4NrLUHan3H4="; + rev = "c9012d6dcaaa939f17c21e1fdb17b013d139e6b9"; + hash = "sha256-yI/3DVX2SgvU+mP1KVe7OA8OtqXbaZG9/mTUQjUHCgk="; }; meta.homepage = "https://github.com/luckasRanarison/tree-sitter-hyprlang"; }; @@ -1220,12 +1220,12 @@ }; janet_simple = buildGrammar { language = "janet_simple"; - version = "0.0.0+rev=6bfbaad"; + version = "0.0.0+rev=2a05cab"; src = fetchFromGitHub { owner = "sogaiu"; repo = "tree-sitter-janet-simple"; - rev = "6bfbaadac2ba0da21087041eff85d26129c4c920"; - hash = "sha256-O06k8ruDFf16VVNb44Sz0maRQkrpFgsePzKjPUNteX8="; + rev = "2a05cab838dfec52daa76f10920917d2e69a85bc"; + hash = "sha256-NOnm40FSzTX6Pf4NchH0hYcTwyxX/usEVKxz8KsIlk4="; }; meta.homepage = "https://github.com/sogaiu/tree-sitter-janet-simple"; }; @@ -1452,12 +1452,12 @@ }; liquid = buildGrammar { language = "liquid"; - version = "0.0.0+rev=2933698"; + version = "0.0.0+rev=0419ac4"; src = fetchFromGitHub { owner = "hankthetank27"; repo = "tree-sitter-liquid"; - rev = "293369818da219d97327908aab33707b04b63fd9"; - hash = "sha256-RmpVKvQfk4IQuE3KOTL3nbBS7LSpBlvMpl5JDAAKb5Q="; + rev = "0419ac4868585320eee8615c90b864a1b04ef433"; + hash = "sha256-1FPDsQSPM86NvMrmxIOVnIC65bUOFtKEwRuAtMDbw6M="; }; meta.homepage = "https://github.com/hankthetank27/tree-sitter-liquid"; }; @@ -2099,12 +2099,12 @@ }; qmljs = buildGrammar { language = "qmljs"; - version = "0.0.0+rev=2c57cac"; + version = "0.0.0+rev=febf48a"; src = fetchFromGitHub { owner = "yuja"; repo = "tree-sitter-qmljs"; - rev = "2c57cac27e207425f8df15327884434cb12365a3"; - hash = "sha256-LFOujMN9HMtDqjq2ZOP0oxydQHFS0wvL6ORBqruGXeM="; + rev = "febf48a5b6928600cd8fb2a01254743af550780d"; + hash = "sha256-bRb5h6gBBxbzhxpCxJK8CsQ5BCtPTuKtuZesE/+mDY0="; }; meta.homepage = "https://github.com/yuja/tree-sitter-qmljs"; }; @@ -2165,12 +2165,12 @@ }; rbs = buildGrammar { language = "rbs"; - version = "0.0.0+rev=e5e807a"; + version = "0.0.0+rev=88d8ed4"; src = fetchFromGitHub { owner = "joker1007"; repo = "tree-sitter-rbs"; - rev = "e5e807a50fcd104a2d740d354632fc671700a0bf"; - hash = "sha256-xEh1oHrLPjLT5LSJfOBFgi0nholVr8EFVGlEMPNIxSI="; + rev = "88d8ed487b5449ddda2fc0c4fe23b71cba29ca24"; + hash = "sha256-z7Ls0SXh18bRMX+FpVIzaeeuItyeCTOnGgQ3tDyrtSU="; }; meta.homepage = "https://github.com/joker1007/tree-sitter-rbs"; }; @@ -2209,12 +2209,12 @@ }; rego = buildGrammar { language = "rego"; - version = "0.0.0+rev=23b1da8"; + version = "0.0.0+rev=20b5a59"; src = fetchFromGitHub { owner = "FallenAngel97"; repo = "tree-sitter-rego"; - rev = "23b1da8de9766d766c4f01531e8be14b5c00c493"; - hash = "sha256-h0z060AFhbQJDyJen3yAjMDxi5nY/QX/KPus2y8oFY0="; + rev = "20b5a5958c837bc9f74b231022a68a594a313f6d"; + hash = "sha256-XwlVsOlxYzB0x+T05iuIp7nFAoQkMByKiHXZ0t5QsjI="; }; meta.homepage = "https://github.com/FallenAngel97/tree-sitter-rego"; }; @@ -2253,14 +2253,14 @@ }; roc = buildGrammar { language = "roc"; - version = "0.0.0+rev=7df2c08"; + version = "0.0.0+rev=df46a85"; src = fetchFromGitHub { - owner = "nat-418"; + owner = "faldor20"; repo = "tree-sitter-roc"; - rev = "7df2c0892e62efb81a7504d9799d4e0d0443d241"; - hash = "sha256-8HJH63NcSuqmPviVWO+UE27ydoU7vRXEIXSTjKLSYvk="; + rev = "df46a85abda9f948d38f5d4e3684cec49c42fef2"; + hash = "sha256-4E9ZnMizo+1wnnkYSPNKMkTTyDKRJT+JqtUWoJH45aA="; }; - meta.homepage = "https://github.com/nat-418/tree-sitter-roc"; + meta.homepage = "https://github.com/faldor20/tree-sitter-roc"; }; ron = buildGrammar { language = "ron"; @@ -2397,23 +2397,23 @@ }; snakemake = buildGrammar { language = "snakemake"; - version = "0.0.0+rev=ba1b386"; + version = "0.0.0+rev=5a7b140"; src = fetchFromGitHub { owner = "osthomas"; repo = "tree-sitter-snakemake"; - rev = "ba1b3868eaa960b945593404af9a7c2f296d3643"; - hash = "sha256-7xYevZTRZwhotT2rBigrRT4w5j4TVgyB416a2XWTL+I="; + rev = "5a7b14074bca95b25935e865ca8f1efad32317e4"; + hash = "sha256-mYqftgJOnlWgQZrXaNtFXvjRQgC14PXYyruTVw5J8Zg="; }; meta.homepage = "https://github.com/osthomas/tree-sitter-snakemake"; }; solidity = buildGrammar { language = "solidity"; - version = "0.0.0+rev=1c94fe3"; + version = "0.0.0+rev=ee5a2d2"; src = fetchFromGitHub { owner = "JoranHonig"; repo = "tree-sitter-solidity"; - rev = "1c94fe3d5351dfcff3551ec1f49614cbf758e444"; - hash = "sha256-8UWFIqvd2L0BpVBF/7XLcOyGq5xDd2kJbzfzMpzEZbU="; + rev = "ee5a2d2ba30b487c4bbf613d2ef310a454c09c7c"; + hash = "sha256-q9SFHnxBUDet65WuxxYFS3N8xDHuQz7K2LWED7uSaWA="; }; meta.homepage = "https://github.com/JoranHonig/tree-sitter-solidity"; }; @@ -2553,23 +2553,23 @@ }; svelte = buildGrammar { language = "svelte"; - version = "0.0.0+rev=2c97326"; + version = "0.0.0+rev=7218cf6"; src = fetchFromGitHub { owner = "tree-sitter-grammars"; repo = "tree-sitter-svelte"; - rev = "2c97326cd96b7c3016c3d249e8dc244c89b4abeb"; - hash = "sha256-rlfLelXjNLtQ2/UACwxB3QO5l+QYFLsfGnBaxTAtgTE="; + rev = "7218cf622b057ae9c530e1f0a7a3ce49806ca55e"; + hash = "sha256-mS4KxJXXb/EzQB5H+Pj+/SEbCTerGFjKiJah8oAGA8c="; }; meta.homepage = "https://github.com/tree-sitter-grammars/tree-sitter-svelte"; }; swift = buildGrammar { language = "swift"; - version = "0.0.0+rev=13ffaec"; + version = "0.0.0+rev=d657f98"; src = fetchFromGitHub { owner = "alex-pinkus"; repo = "tree-sitter-swift"; - rev = "13ffaec4068facfff608e3afbdb7a581c185f6a6"; - hash = "sha256-Y1QioBOgrziHsBkbSVt/N1FnjDxYKZK4WulMQcqyrEU="; + rev = "d657f98dd6bbc34cb48438c9e5956f15a6d89f1d"; + hash = "sha256-KE+qjTP3UWKvcLJPYIJmEGeKBWAdpCzgW4/vIccueng="; }; generate = true; meta.homepage = "https://github.com/alex-pinkus/tree-sitter-swift"; @@ -2665,12 +2665,12 @@ }; terraform = buildGrammar { language = "terraform"; - version = "0.0.0+rev=e936d3f"; + version = "0.0.0+rev=422cbe1"; src = fetchFromGitHub { owner = "MichaHoffmann"; repo = "tree-sitter-hcl"; - rev = "e936d3fef8bac884661472dce71ad82284761eb1"; - hash = "sha256-lcvs4auZrMb1f9ocrAnLVxX8JnvrPT18LsJBqoNG9Oo="; + rev = "422cbe1d93a8ae3847744b664041fc76876babcd"; + hash = "sha256-PrA/F8IIJDzr2HjX9NToApzbM7nO+NesMcKhOQyOyNU="; }; location = "dialects/terraform"; meta.homepage = "https://github.com/MichaHoffmann/tree-sitter-hcl"; @@ -2766,12 +2766,12 @@ }; tsx = buildGrammar { language = "tsx"; - version = "0.0.0+rev=4ad3010"; + version = "0.0.0+rev=4f3eb66"; src = fetchFromGitHub { owner = "tree-sitter"; repo = "tree-sitter-typescript"; - rev = "4ad3010c91d700026d036b5230e2d99ba94ae8a4"; - hash = "sha256-9GCo/xjP6J/tEimx4ce2Qd7XhhbSuWZoTVrysac7BOw="; + rev = "4f3eb6655a1cd1a1f87ef10201f8e22886dcd76e"; + hash = "sha256-f/xk4MdGVvkZv0642aOwA9UFZSb0GvoLu+jgXUp/bhw="; }; location = "tsx"; meta.homepage = "https://github.com/tree-sitter/tree-sitter-typescript"; @@ -2789,23 +2789,23 @@ }; twig = buildGrammar { language = "twig"; - version = "0.0.0+rev=eaf80e6"; + version = "0.0.0+rev=085648e"; src = fetchFromGitHub { owner = "gbprod"; repo = "tree-sitter-twig"; - rev = "eaf80e6af969e25993576477a9dbdba3e48c1305"; - hash = "sha256-fp7HcdJEFxi/zBFSrM86THwBMpqFwAGugcTVbPk3bd4="; + rev = "085648e01d1422163a1702a44e72303b4e2a0bd1"; + hash = "sha256-87jFYAAnblTeEdlXqTjyiiNee/OgasPam1b2xyKQIHY="; }; meta.homepage = "https://github.com/gbprod/tree-sitter-twig"; }; typescript = buildGrammar { language = "typescript"; - version = "0.0.0+rev=4ad3010"; + version = "0.0.0+rev=4f3eb66"; src = fetchFromGitHub { owner = "tree-sitter"; repo = "tree-sitter-typescript"; - rev = "4ad3010c91d700026d036b5230e2d99ba94ae8a4"; - hash = "sha256-9GCo/xjP6J/tEimx4ce2Qd7XhhbSuWZoTVrysac7BOw="; + rev = "4f3eb6655a1cd1a1f87ef10201f8e22886dcd76e"; + hash = "sha256-f/xk4MdGVvkZv0642aOwA9UFZSb0GvoLu+jgXUp/bhw="; }; location = "typescript"; meta.homepage = "https://github.com/tree-sitter/tree-sitter-typescript"; @@ -2901,12 +2901,12 @@ }; v = buildGrammar { language = "v"; - version = "0.0.0+rev=7e11a6f"; + version = "0.0.0+rev=e91f8a4"; src = fetchFromGitHub { owner = "vlang"; repo = "v-analyzer"; - rev = "7e11a6f8f369df935664fadd2f0c99d90fe3226f"; - hash = "sha256-zCXfYW8NCsdqKKEMkZUudpCEQM4bLePyCGFS0w86DY0="; + rev = "e91f8a42de7842f24f4ce600754f2b6651985fd4"; + hash = "sha256-38nerR7oZBwxXWd08QqEEMSxAZqXRHCRdLbMEbRhcQI="; }; location = "tree_sitter_v"; meta.homepage = "https://github.com/vlang/v-analyzer"; @@ -3101,12 +3101,12 @@ }; zig = buildGrammar { language = "zig"; - version = "0.0.0+rev=0d08703"; + version = "0.0.0+rev=7c5a29b"; src = fetchFromGitHub { owner = "maxxnino"; repo = "tree-sitter-zig"; - rev = "0d08703e4c3f426ec61695d7617415fff97029bd"; - hash = "sha256-a3W7eBUN4V3HD3YPr1+3tpuWQfIQy1Wu8qxCQx0hEnI="; + rev = "7c5a29b721d409be8842017351bf007d7e384401"; + hash = "sha256-UXJCh8GvXzn+sssTrIsLViXD3TiBZhLFABYCKM+fNMQ="; }; meta.homepage = "https://github.com/maxxnino/tree-sitter-zig"; }; diff --git a/pkgs/applications/editors/vim/plugins/overrides.nix b/pkgs/applications/editors/vim/plugins/overrides.nix index 2c8147cfce73c..dc7fe9b2303d1 100644 --- a/pkgs/applications/editors/vim/plugins/overrides.nix +++ b/pkgs/applications/editors/vim/plugins/overrides.nix @@ -60,6 +60,9 @@ , zsh , # codeium-nvim dependencies codeium +, # codesnap-nvim dependencies + clang +, libuv , # command-t dependencies getconf , ruby @@ -400,6 +403,54 @@ ''; }; + codesnap-nvim = + let + version = "1.3.1"; + src = fetchFromGitHub { + owner = "mistricky"; + repo = "codesnap.nvim"; + rev = "refs/tags/v${version}"; + hash = "sha256-nS/bAWsBQ1L4M9437Yp6FdmHoogzalKlLIAXnRZyMp0="; + }; + codesnap-lib = rustPlatform.buildRustPackage { + pname = "codesnap-lib"; + inherit version src; + + sourceRoot = "${src.name}/generator"; + + cargoHash = "sha256-FTQl5WIGEf+RQKYJ4BbIE3cCeN+NYUp7VXIrpxB05tU="; + + nativeBuildInputs = [ + pkg-config + rustPlatform.bindgenHook + ]; + + buildInputs = [ + libuv.dev + ] ++ lib.optionals stdenv.isDarwin [ + darwin.apple_sdk.frameworks.AppKit + ]; + }; + in + buildVimPlugin { + pname = "codesnap.nvim"; + inherit version src; + + # - Remove the shipped pre-built binaries + # - Copy the resulting binary from the codesnap-lib derivation + # Note: the destination should be generator.so, even on darwin + # https://github.com/mistricky/codesnap.nvim/blob/main/scripts/build_generator.sh + postInstall = let + extension = if stdenv.isDarwin then "dylib" else "so"; + in '' + rm -r $out/lua/*.so + cp ${codesnap-lib}/lib/libgenerator.${extension} $out/lua/generator.so + ''; + + doInstallCheck = true; + nvimRequireCheck = "codesnap"; + }; + command-t = super.command-t.overrideAttrs { nativeBuildInputs = [ getconf ruby ]; buildPhase = '' @@ -1485,6 +1536,11 @@ ''; }; + todo-comments-nvim = super.todo-comments-nvim.overrideAttrs { + dependencies = [ self.plenary-nvim ]; + nvimRequireCheck = "todo-comments"; + }; + tup = let # Based on the comment at the top of https://github.com/gittup/tup/blob/master/contrib/syntax/tup.vim diff --git a/pkgs/applications/editors/vim/plugins/vim-plugin-names b/pkgs/applications/editors/vim/plugins/vim-plugin-names index 25b19fcf8f8d7..2f1c42fe67f2f 100644 --- a/pkgs/applications/editors/vim/plugins/vim-plugin-names +++ b/pkgs/applications/editors/vim/plugins/vim-plugin-names @@ -191,6 +191,7 @@ https://github.com/neoclide/coc.nvim/,release, https://github.com/manicmaniac/coconut.vim/,HEAD, https://github.com/Exafunction/codeium.nvim/,HEAD, https://github.com/Exafunction/codeium.vim/,HEAD, +https://github.com/mistricky/codesnap.nvim/,HEAD, https://github.com/gorbit99/codewindow.nvim/,HEAD, https://github.com/metakirby5/codi.vim/,, https://github.com/tjdevries/colorbuddy.nvim/,, @@ -691,7 +692,7 @@ https://github.com/yamatsum/nvim-nonicons/,, https://github.com/rcarriga/nvim-notify/,, https://github.com/LhKipp/nvim-nu/,HEAD, https://github.com/ojroques/nvim-osc52/,, -https://github.com/julienvincent/nvim-paredit,, +https://github.com/julienvincent/nvim-paredit/,, https://github.com/gpanders/nvim-parinfer/,HEAD, https://github.com/gennaro-tedesco/nvim-peekup/,, https://github.com/yorickpeterse/nvim-pqf/,HEAD, @@ -760,7 +761,7 @@ https://github.com/drewtempelmeyer/palenight.vim/,, https://github.com/JoosepAlviste/palenightfall.nvim/,, https://github.com/roobert/palette.nvim/,HEAD, https://github.com/NLKNguyen/papercolor-theme/,, -https://github.com/dundalek/parpar.nvim,, +https://github.com/dundalek/parpar.nvim/,, https://github.com/tmsvg/pear-tree/,, https://github.com/steelsojka/pears.nvim/,, https://github.com/olimorris/persisted.nvim/,HEAD, @@ -813,6 +814,7 @@ https://github.com/vim-scripts/restore_view.vim/,HEAD,restore-view-vim https://github.com/gu-fan/riv.vim/,, https://github.com/kevinhwang91/rnvimr/,, https://github.com/mfukar/robotframework-vim/,, +https://github.com/nvim-neorocks/rocks.nvim/,, https://github.com/ron-rs/ron.vim/,, https://github.com/jmederosalvarado/roslyn.nvim/,HEAD, https://github.com/keith/rspec.vim/,, diff --git a/pkgs/applications/editors/vscode/extensions/default.nix b/pkgs/applications/editors/vscode/extensions/default.nix index 9d54a778b836a..94d77cf65efdb 100644 --- a/pkgs/applications/editors/vscode/extensions/default.nix +++ b/pkgs/applications/editors/vscode/extensions/default.nix @@ -2721,7 +2721,7 @@ let description = "CloudFormation Linter IDE integration, autocompletion, and documentation"; homepage = "https://github.com/aws-cloudformation/cfn-lint-visual-studio-code"; license = lib.licenses.asl20; - maintainers = [ lib.maintainers.wolfangaukang ]; + maintainers = [ ]; }; }; @@ -3362,6 +3362,23 @@ let }; }; + ms-vscode-remote.remote-wsl = buildVscodeMarketplaceExtension { + mktplcRef = { + name = "remote-wsl"; + publisher = "ms-vscode-remote"; + version = "0.88.2"; + hash = "sha256-fl7fLNd3EHA9eMiPUIL/23SUiA81gveqZLFkqaHTX+Q="; + }; + meta = { + changelog = "https://marketplace.visualstudio.com/items/ms-vscode-remote.remote-wsl/changelog"; + description = "Windows Subsystem for Linux support for Visual Studio Code"; + downloadPage = "https://marketplace.visualstudio.com/items?itemName=ms-vscode-remote.remote-wsl"; + homepage = "https://code.visualstudio.com/docs/remote/wsl"; + license = lib.licenses.unfree; + maintainers = [ lib.maintainers.uncenter ]; + }; + }; + ms-vsliveshare.vsliveshare = callPackage ./ms-vsliveshare.vsliveshare { }; mshr-h.veriloghdl = buildVscodeMarketplaceExtension { @@ -3945,6 +3962,31 @@ let }; }; + sdras.night-owl = buildVscodeMarketplaceExtension rec { + mktplcRef = { + name = "night-owl"; + publisher = "sdras"; + version = "2.0.1"; + hash = "sha256-AqfcVV9GYZ+GLgusXfij9z4WzrU9cCHp3sdZb0i6HzE="; + }; + meta = { + changelog = "https://github.com/sdras/night-owl-vscode-theme/blob/main/CHANGELOG.md#${ + builtins.replaceStrings [ "." ] [ "" ] mktplcRef.version + }"; + description = "A Visual Studio Code theme named Light Owl for daytime usage"; + longDescription = '' + A VS Code theme for the night owls out there. Now introducing + Light Owl theme for daytime usage. Decisions were based + on meaningful contrast for reading comprehension and for + optimal razzle dazzle. + ''; + downloadPage = "https://marketplace.visualstudio.com/items?itemName=sdras.night-owl"; + homepage = "https://github.com/sdras/night-owl-vscode-theme"; + license = lib.licenses.mit; + maintainers = [ lib.maintainers.pladypus ]; + }; + }; + seatonjiang.gitmoji-vscode = buildVscodeMarketplaceExtension { mktplcRef = { publisher = "seatonjiang"; @@ -4689,7 +4731,7 @@ let }; meta = { license = lib.licenses.mit; - maintainers = [ lib.maintainers.wolfangaukang ]; + maintainers = [ ]; }; }; diff --git a/pkgs/applications/editors/vscode/vscode.nix b/pkgs/applications/editors/vscode/vscode.nix index 2eb93a086ea6d..ac4d1d69795bb 100644 --- a/pkgs/applications/editors/vscode/vscode.nix +++ b/pkgs/applications/editors/vscode/vscode.nix @@ -30,21 +30,21 @@ let archive_fmt = if stdenv.isDarwin then "zip" else "tar.gz"; sha256 = { - x86_64-linux = "039yb1v4vcgsyp3gfvsfm7pxivf20ycyvidhrk26jfm54ghbbnlz"; - x86_64-darwin = "1nkwww12yalkxja8vdln45kzrbybhrca8q0zxj8kk9s8bdzsvr5d"; - aarch64-linux = "0pz8qji6n7j0vrm4l84vxw2sad6q3swz7jda4zyw1n13y7p9kpcj"; - aarch64-darwin = "1a1b233f28x0v7rb7295jdivzxqvp812x585vacxx1qfmpn6mabl"; - armv7l-linux = "12569045nzz5zsmaqd4xvq5lmajcl7w3qdv0n9m5rh2g6s32585c"; + x86_64-linux = "0d0cgsiafmr1wmxqji7mi4hmms7zqql868bcfbq9lmkw96zw85dw"; + x86_64-darwin = "1zga9zm25h33m42cdnbkpzx5vbcwm9n7036qapq8pgrb23mals7f"; + aarch64-linux = "0wsdcny0y8xfvdf62qh792ifcq1am8i8xkchh5rscjc3xli6r86s"; + aarch64-darwin = "13jd39lm667206ga8fqbdb7mdqbkmbgq1l7wid3h4yanz87zbm99"; + armv7l-linux = "1xpvcypm0xnwjmbj2c1a245yav3nwi0g2k564x91vazfw4nmi7mv"; }.${system} or throwSystem; in callPackage ./generic.nix rec { # Please backport all compatible updates to the stable release. # This is important for the extension ecosystem. - version = "1.90.1"; + version = "1.90.2"; pname = "vscode" + lib.optionalString isInsiders "-insiders"; # This is used for VS Code - Remote SSH test - rev = "611f9bfce64f25108829dd295f54a6894e87339d"; + rev = "5437499feb04f7a586f677b155b039bc2b3669eb"; executableName = "code" + lib.optionalString isInsiders "-insiders"; longName = "Visual Studio Code" + lib.optionalString isInsiders " - Insiders"; @@ -68,7 +68,7 @@ in src = fetchurl { name = "vscode-server-${rev}.tar.gz"; url = "https://update.code.visualstudio.com/commit:${rev}/server-linux-x64/stable"; - sha256 = "1j4fd3281jsm10ngq9lzwph3nil0xwbypc180sh5wifb66bmprf6"; + sha256 = "18npvj29g9xwjyxv3a0fxipk30hgm487cfr3d91dvp5hxhl4dwwr"; }; }; diff --git a/pkgs/applications/editors/xed-editor/default.nix b/pkgs/applications/editors/xed-editor/default.nix index d44b07292ca0e..7458618a1e143 100644 --- a/pkgs/applications/editors/xed-editor/default.nix +++ b/pkgs/applications/editors/xed-editor/default.nix @@ -19,13 +19,13 @@ stdenv.mkDerivation rec { pname = "xed-editor"; - version = "3.6.2"; + version = "3.6.3"; src = fetchFromGitHub { owner = "linuxmint"; repo = "xed"; rev = version; - sha256 = "sha256-+yY+vzDMeS4AMMAklzADD4/LAQgav3clM2CCK6xh47Q="; + sha256 = "sha256-xsNqzicI11dM/DjY00pXaPpQdHA0ltP23g34fMWUoUA="; }; patches = [ diff --git a/pkgs/applications/file-managers/clifm/default.nix b/pkgs/applications/file-managers/clifm/default.nix index 026c6f52d0207..cd263dd2e851a 100644 --- a/pkgs/applications/file-managers/clifm/default.nix +++ b/pkgs/applications/file-managers/clifm/default.nix @@ -11,13 +11,13 @@ stdenv.mkDerivation rec { pname = "clifm"; - version = "1.18"; + version = "1.19"; src = fetchFromGitHub { owner = "leo-arch"; repo = pname; rev = "v${version}"; - hash = "sha256-tgCGZCLCWcF7ktXqDHjoUkeVqxg6QVOkZb7pbk3nA+U="; + hash = "sha256-QNxEvFZ5e4jQV2Tv2/D9KPRDoCoQlrqStFnbKVgcXxg="; }; buildInputs = [ diff --git a/pkgs/applications/file-managers/walk/default.nix b/pkgs/applications/file-managers/walk/default.nix index d6273cf07ed55..fab06bd8da96b 100644 --- a/pkgs/applications/file-managers/walk/default.nix +++ b/pkgs/applications/file-managers/walk/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "walk"; - version = "1.7.0"; + version = "1.8.0"; src = fetchFromGitHub { owner = "antonmedv"; repo = "walk"; rev = "v${version}"; - hash = "sha256-hif62WAyJyFHpJoP3ph7gJk1QkEL7qkcv/BJuoXkwFU="; + hash = "sha256-xs9K8WrckkpyzHnjYlzRsicMW+o7nTMYCIZVWOwx4PU="; }; - vendorHash = "sha256-e292ke0JiFEopLSozb+FkpwzSuhpIs/PdWOYuNI2M2o="; + vendorHash = "sha256-p92H4JqklrV0c4vp9puAgDzBzMpwI40WPz9ix0e77l8="; meta = with lib; { description = "Terminal file manager"; diff --git a/pkgs/applications/finance/odoo/update.sh b/pkgs/applications/finance/odoo/update.sh deleted file mode 100755 index 0f7ee144cf8a2..0000000000000 --- a/pkgs/applications/finance/odoo/update.sh +++ /dev/null @@ -1,27 +0,0 @@ -#!/usr/bin/env nix-shell -#!nix-shell -i bash -p curl gnused nix coreutils nix-prefetch - -set -euo pipefail - -DOCKER=$(curl -s https://raw.githubusercontent.com/odoo/docker/master/16.0/Dockerfile) - -get_var() { - echo "$DOCKER" | grep -E "^[A-Z][A-Z][A-Z] ODOO_$1" | sed -r "s|^[A-Z]{3} ODOO_$1.||g" -} - -VERSION=$(get_var VERSION) -RELEASE=$(get_var RELEASE) - -latestVersion="$VERSION.$RELEASE" -currentVersion=$(nix-instantiate --eval -E "with import ./. {}; odoo.version or (lib.getVersion odoo)" | tr -d '"') - -if [[ "$currentVersion" == "$latestVersion" ]]; then - echo "odoo is up-to-date: $currentVersion" - exit 0 -fi - -cd "$(dirname "${BASH_SOURCE[0]}")" - -sed -ri "s| hash.+ # odoo| hash = \"$(nix-prefetch -q fetchzip --url "https://nightly.odoo.com/${VERSION}/nightly/src/odoo_${latestVersion}.zip")\"; # odoo|g" default.nix -sed -ri "s| odoo_version.+| odoo_version = \"$VERSION\";|" default.nix -sed -ri "s| odoo_release.+| odoo_release = \"$RELEASE\";|" default.nix diff --git a/pkgs/applications/graphics/djv/default.nix b/pkgs/applications/graphics/djv/default.nix index 00d3d93a25e15..b2ba5c891c4c6 100644 --- a/pkgs/applications/graphics/djv/default.nix +++ b/pkgs/applications/graphics/djv/default.nix @@ -17,6 +17,7 @@ , libpng , opencolorio_1 , freetype +, openexr }: let @@ -145,11 +146,12 @@ stdenv.mkDerivation rec { ilmbase glm glfw3 - zlib.dev + zlib libpng freetype opencolorio_1 djv-deps + openexr ]; postPatch = '' @@ -162,6 +164,13 @@ stdenv.mkDerivation rec { sed -i cmake/Modules/FindOCIO.cmake \ -e 's/PATH_SUFFIXES static//' \ -e '/OpenColorIO_STATIC/d' + + # When searching for OpenEXR this looks for Iex.h, which exists in ilmbase, + # since it's a secondary inport, to find the correct OpenEXR lib, we search + # for something specifically in OpenEXR. + + sed -i cmake/Modules/FindOpenEXR.cmake \ + -e 's/find_path(OpenEXR_INCLUDE_DIR NAMES Iex.h PATH_SUFFIXES OpenEXR)/find_path(OpenEXR_INCLUDE_DIR NAMES ImfImage.h PATH_SUFFIXES OpenEXR)/' ''; # GLFW requires a working X11 session. diff --git a/pkgs/applications/graphics/drawio/default.nix b/pkgs/applications/graphics/drawio/default.nix index fdecceeac74e7..448b371d2ca91 100644 --- a/pkgs/applications/graphics/drawio/default.nix +++ b/pkgs/applications/graphics/drawio/default.nix @@ -14,14 +14,14 @@ stdenv.mkDerivation rec { pname = "drawio"; - version = "24.4.8"; + version = "24.6.1"; src = fetchFromGitHub { owner = "jgraph"; repo = "drawio-desktop"; rev = "v${version}"; fetchSubmodules = true; - hash = "sha256-dtkRi7oisdgMAbaltPcz5umxcd6/F1WOjKQpJUAFFY0="; + hash = "sha256-trBSNE5OBBNq18Dn/IwhHpD3ZQ7C5venwsBtyZxv+2k="; }; # `@electron/fuses` tries to run `codesign` and fails. Disable and use autoSignDarwinBinariesHook instead @@ -31,7 +31,7 @@ stdenv.mkDerivation rec { offlineCache = fetchYarnDeps { yarnLock = src + "/yarn.lock"; - hash = "sha256-JbDIaO5jgPAoSD3hkMaKp3vLU5Avt+G5h427bvWJ08k="; + hash = "sha256-9Hq08DXEiOK0P+x89Gl3Y2+dN5r7aS7GNrCSVDGMpFs="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/graphics/pixeluvo/default.nix b/pkgs/applications/graphics/pixeluvo/default.nix index 0ae800710d486..9d19e13709658 100644 --- a/pkgs/applications/graphics/pixeluvo/default.nix +++ b/pkgs/applications/graphics/pixeluvo/default.nix @@ -52,7 +52,7 @@ stdenv.mkDerivation rec { sourceProvenance = with sourceTypes; [ binaryNativeCode ]; license = licenses.unfree; platforms = [ "x86_64-linux" ]; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; mainProgram = "pixeluvo"; }; } diff --git a/pkgs/applications/kde/alligator.nix b/pkgs/applications/kde/alligator.nix index 425f9733b38aa..78263cb73be57 100644 --- a/pkgs/applications/kde/alligator.nix +++ b/pkgs/applications/kde/alligator.nix @@ -38,6 +38,6 @@ mkDerivation rec { # https://invent.kde.org/plasma-mobile/alligator/-/commit/db30f159c4700244532b17a260deb95551045b7a # * SPDX-License-Identifier: GPL-2.0-only OR GPL-3.0-only OR LicenseRef-KDE-Accepted-GPL license = with licenses; [ gpl2Only gpl3Only ]; - maintainers = with maintainers; [ samueldr ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/applications/kde/audiotube.nix b/pkgs/applications/kde/audiotube.nix index c5a5da8550083..58d188d486fbb 100644 --- a/pkgs/applications/kde/audiotube.nix +++ b/pkgs/applications/kde/audiotube.nix @@ -66,6 +66,6 @@ mkDerivation rec { homepage = "https://invent.kde.org/plasma-mobile/audiotube"; # https://invent.kde.org/plasma-mobile/audiotube/-/tree/c503d0607a3386112beaa9cf990ab85fe33ef115/LICENSES license = with licenses; [ bsd2 cc0 gpl2Only gpl3Only ]; - maintainers = with maintainers; [ samueldr ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/applications/kde/calindori.nix b/pkgs/applications/kde/calindori.nix index bb10fa7bb10c7..c1e9f4d59b18b 100644 --- a/pkgs/applications/kde/calindori.nix +++ b/pkgs/applications/kde/calindori.nix @@ -41,6 +41,6 @@ mkDerivation rec { description = "Calendar for Plasma Mobile"; homepage = "https://invent.kde.org/plasma-mobile/calindori"; license = licenses.gpl3Plus; - maintainers = with maintainers; [ samueldr ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/applications/kde/kalk.nix b/pkgs/applications/kde/kalk.nix index c151078e910e0..d88741d179bb7 100644 --- a/pkgs/applications/kde/kalk.nix +++ b/pkgs/applications/kde/kalk.nix @@ -46,6 +46,6 @@ mkDerivation rec { mainProgram = "kalk"; homepage = "https://invent.kde.org/plasma-mobile/kalk"; license = licenses.gpl3Plus; - maintainers = with maintainers; [ samueldr ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/applications/kde/kasts.nix b/pkgs/applications/kde/kasts.nix index 65e4d09409c7a..87136676df40b 100644 --- a/pkgs/applications/kde/kasts.nix +++ b/pkgs/applications/kde/kasts.nix @@ -63,6 +63,6 @@ mkDerivation rec { homepage = "https://apps.kde.org/kasts/"; # https://invent.kde.org/plasma-mobile/kasts/-/tree/master/LICENSES license = with licenses; [ bsd2 cc-by-sa-40 cc0 gpl2Only gpl2Plus gpl3Only gpl3Plus lgpl3Plus ]; - maintainers = with maintainers; [ samueldr ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/applications/kde/kclock.nix b/pkgs/applications/kde/kclock.nix index 6212fa8b0400b..d97ad54177448 100644 --- a/pkgs/applications/kde/kclock.nix +++ b/pkgs/applications/kde/kclock.nix @@ -41,6 +41,6 @@ mkDerivation rec { description = "Clock app for plasma mobile"; homepage = "https://invent.kde.org/plasma-mobile/kclock"; license = licenses.gpl2Plus; - maintainers = with maintainers; [ samueldr ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/applications/kde/keysmith.nix b/pkgs/applications/kde/keysmith.nix index cca4d2ece5635..6dd8e3505b537 100644 --- a/pkgs/applications/kde/keysmith.nix +++ b/pkgs/applications/kde/keysmith.nix @@ -34,7 +34,7 @@ mkDerivation rec { mainProgram = "keysmith"; license = licenses.gpl3; homepage = "https://github.com/KDE/keysmith"; - maintainers = with maintainers; [ samueldr shamilton ]; + maintainers = with maintainers; [ shamilton ]; platforms = platforms.linux; }; } diff --git a/pkgs/applications/kde/koko.nix b/pkgs/applications/kde/koko.nix index 826125f91d104..d47734b94e1f9 100644 --- a/pkgs/applications/kde/koko.nix +++ b/pkgs/applications/kde/koko.nix @@ -77,6 +77,6 @@ mkDerivation rec { homepage = "https://apps.kde.org/koko/"; # LGPL-2.1-only OR LGPL-3.0-only OR LicenseRef-KDE-Accepted-LGPL license = [ licenses.lgpl3Only licenses.lgpl21Only ]; - maintainers = with maintainers; [ samueldr ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/applications/kde/konquest.nix b/pkgs/applications/kde/konquest.nix index ba400bd5da2e9..41ca056f8a96b 100644 --- a/pkgs/applications/kde/konquest.nix +++ b/pkgs/applications/kde/konquest.nix @@ -26,6 +26,6 @@ mkDerivation { description = "Galactic strategy game"; mainProgram = "konquest"; license = with lib.licenses; [ gpl2 ]; - maintainers = with lib.maintainers; [ lheckemann ]; + maintainers = with lib.maintainers; [ ]; }; } diff --git a/pkgs/applications/kde/kpublictransport.nix b/pkgs/applications/kde/kpublictransport.nix index 0678aa10daff5..84d97a42ac3fe 100644 --- a/pkgs/applications/kde/kpublictransport.nix +++ b/pkgs/applications/kde/kpublictransport.nix @@ -10,7 +10,7 @@ mkDerivation { pname = "kpublictransport"; meta = with lib; { license = [ licenses.cc0 ]; - maintainers = [ maintainers.samueldr ]; + maintainers = [ ]; }; nativeBuildInputs = [ extra-cmake-modules ]; diff --git a/pkgs/applications/kde/krecorder.nix b/pkgs/applications/kde/krecorder.nix index afa5ddee2ed67..d6bdfcc4d38cb 100644 --- a/pkgs/applications/kde/krecorder.nix +++ b/pkgs/applications/kde/krecorder.nix @@ -38,6 +38,6 @@ mkDerivation rec { mainProgram = "krecorder"; homepage = "https://invent.kde.org/plasma-mobile/krecorder"; license = licenses.gpl3Plus; - maintainers = with maintainers; [ samueldr ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/applications/kde/ktrip.nix b/pkgs/applications/kde/ktrip.nix index ebcb85d67d4a1..8780a64d51a98 100644 --- a/pkgs/applications/kde/ktrip.nix +++ b/pkgs/applications/kde/ktrip.nix @@ -43,6 +43,6 @@ mkDerivation rec { homepage = "https://apps.kde.org/ktrip/"; # GPL-2.0-or-later license = licenses.gpl2Plus; - maintainers = with maintainers; [ samueldr ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/applications/kde/kweather.nix b/pkgs/applications/kde/kweather.nix index b9a5fc04f6dfa..5c2f244fae60e 100644 --- a/pkgs/applications/kde/kweather.nix +++ b/pkgs/applications/kde/kweather.nix @@ -44,6 +44,6 @@ mkDerivation rec { mainProgram = "kweather"; homepage = "https://invent.kde.org/plasma-mobile/kweather"; license = with licenses; [ gpl2Plus cc-by-40 ]; - maintainers = with maintainers; [ samueldr ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/applications/kde/libkdegames.nix b/pkgs/applications/kde/libkdegames.nix index 8e96bc1ad56c5..ec53fa9b0507d 100644 --- a/pkgs/applications/kde/libkdegames.nix +++ b/pkgs/applications/kde/libkdegames.nix @@ -20,6 +20,6 @@ mkDerivation { ]; meta = { license = with lib.licenses; [ gpl2 ]; - maintainers = with lib.maintainers; [ lheckemann ]; + maintainers = with lib.maintainers; [ ]; }; } diff --git a/pkgs/applications/misc/auto-multiple-choice/default.nix b/pkgs/applications/misc/auto-multiple-choice/default.nix index cd27d3584b70b..33a4edbdbe579 100644 --- a/pkgs/applications/misc/auto-multiple-choice/default.nix +++ b/pkgs/applications/misc/auto-multiple-choice/default.nix @@ -37,31 +37,28 @@ stdenv.mkDerivation (finalAttrs: rec { makeFlags = [ "PERLPATH=${perl}/bin/perl" - # We *need* to pass DESTDIR, as the Makefile ignores PREFIX. - "DESTDIR=$(out)" - # Relative paths. - "BINDIR=/bin" - "PERLDIR=/share/perl5" - "MODSDIR=/lib" # At runtime, AMC will test for that dir before - # defaulting to the "portable" strategy we use, so this test - # *must* fail. *But* this variable cannot be set to anything but - # "/lib" , because that name is hardcoded in the main executable - # and this variable controls both both the path AMC will check at - # runtime, AND the path where the actual modules will be stored at - # build-time. This has been reported upstream as - # https://project.auto-multiple-choice.net/issues/872 - "TEXDIR=/tex/latex/" # what texlive.combine expects - "TEXDOCDIR=/share/doc/texmf/" # TODO where to put this? - "MAN1DIR=/share/man/man1" - "DESKTOPDIR=/share/applications" - "METAINFODIR=/share/metainfo" - "ICONSDIR=/share/auto-multiple-choice/icons" - "APPICONDIR=/share/icons/hicolor" - "LOCALEDIR=/share/locale" - "MODELSDIR=/share/auto-multiple-choice/models" - "DOCDIR=/share/doc/auto-multiple-choice" - "SHARED_MIMEINFO_DIR=/share/mime/packages" - "LANG_GTKSOURCEVIEW_DIR=/share/gtksourceview-4/language-specs" + # We *need* to set DESTDIR as empty and use absolute paths below, + # because the Makefile ignores PREFIX and MODSDIR is required to + # be an absolute path to not trigger "portable distribution" check + # in auto-multiple-choice.in. + "DESTDIR=" + # Set variables from Makefile.conf to absolute paths + "BINDIR=${placeholder "out"}/bin" + "PERLDIR=${placeholder "out"}/share/perl5" + "MODSDIR=${placeholder "out"}/lib" + "TEXDIR=${placeholder "out"}/tex/latex/" # what texlive.combine expects + "TEXDOCDIR=${placeholder "out"}/share/doc/texmf/" # TODO where to put this? + "MAN1DIR=${placeholder "out"}/share/man/man1" + "DESKTOPDIR=${placeholder "out"}/share/applications" + "METAINFODIR=${placeholder "out"}/share/metainfo" + "ICONSDIR=${placeholder "out"}/share/auto-multiple-choice/icons" + "CSSDIR=${placeholder "out"}/share/auto-multiple-choice/gtk" + "APPICONDIR=${placeholder "out"}/share/icons/hicolor" + "LOCALEDIR=${placeholder "out"}/share/locale" + "MODELSDIR=${placeholder "out"}/share/auto-multiple-choice/models" + "DOCDIR=${placeholder "out"}/share/doc/auto-multiple-choice" + "SHARED_MIMEINFO_DIR=${placeholder "out"}/share/mime/packages" + "LANG_GTKSOURCEVIEW_DIR=${placeholder "out"}/share/gtksourceview-4/language-specs" # Pretend to be redhat so `install` doesn't try to chown/chgrp. "SYSTEM_TYPE=rpm" "GCC=${stdenv.cc.targetPrefix}cc" @@ -93,6 +90,7 @@ stdenv.mkDerivation (finalAttrs: rec { XMLWriter ]}:"$out/share/perl5 \ --prefix XDG_DATA_DIRS : "$out/share:$XDG_ICON_DIRS:$GSETTINGS_SCHEMAS_PATH" \ + --prefix PATH : "$out/bin" \ --set TEXINPUTS ":.:$out/tex/latex" ''; diff --git a/pkgs/applications/misc/bemenu/default.nix b/pkgs/applications/misc/bemenu/default.nix index 5cda5ec969bc5..d017f4306fe73 100644 --- a/pkgs/applications/misc/bemenu/default.nix +++ b/pkgs/applications/misc/bemenu/default.nix @@ -44,7 +44,7 @@ stdenv.mkDerivation (finalAttrs: { homepage = "https://github.com/Cloudef/bemenu"; description = "Dynamic menu library and client program inspired by dmenu"; license = licenses.gpl3Plus; - maintainers = with maintainers; [ lheckemann ]; + maintainers = with maintainers; [ ]; mainProgram = "bemenu"; platforms = with platforms; linux; }; diff --git a/pkgs/applications/misc/cobang/default.nix b/pkgs/applications/misc/cobang/default.nix index 8759991d9b3b5..49e3f13b6d2e5 100644 --- a/pkgs/applications/misc/cobang/default.nix +++ b/pkgs/applications/misc/cobang/default.nix @@ -97,7 +97,7 @@ buildPythonApplication rec { description = "QR code scanner desktop app for Linux"; homepage = "https://github.com/hongquan/CoBang"; license = licenses.gpl3Only; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; mainProgram = "cobang"; platforms = [ "x86_64-linux" ]; }; diff --git a/pkgs/applications/misc/cotp/default.nix b/pkgs/applications/misc/cotp/default.nix index 827a76fdd4518..14c8ee0edd4e2 100644 --- a/pkgs/applications/misc/cotp/default.nix +++ b/pkgs/applications/misc/cotp/default.nix @@ -8,16 +8,16 @@ rustPlatform.buildRustPackage rec { pname = "cotp"; - version = "1.7.0"; + version = "1.7.1"; src = fetchFromGitHub { owner = "replydev"; repo = "cotp"; rev = "v${version}"; - hash = "sha256-Qr4pHtTQfJjRiFI4vZAynRWyJWYqWHYhZH4Mgd6OgR8="; + hash = "sha256-6FriNAwxo+YnJWmCrScyafUEkJvEJz3O9Zoj9yerpSI="; }; - cargoHash = "sha256-U/kVN8oaNuZ9CdLkAQWK3H5kZv5qZgzWQwi8pHMVPcM="; + cargoHash = "sha256-/CW0CGhPjKd5oU2LYW4lPWKMATn9aJdjIy44yZJyU/E="; buildInputs = lib.optionals stdenv.isLinux [ libxcb ] ++ lib.optionals stdenv.isDarwin [ AppKit ]; diff --git a/pkgs/applications/misc/diebahn/default.nix b/pkgs/applications/misc/diebahn/default.nix index 30a22e1c7be4f..3bf71ddab71cb 100644 --- a/pkgs/applications/misc/diebahn/default.nix +++ b/pkgs/applications/misc/diebahn/default.nix @@ -21,19 +21,19 @@ stdenv.mkDerivation rec { pname = "diebahn"; - version = "2.5.0"; + version = "2.6.0"; src = fetchFromGitLab { owner = "schmiddi-on-mobile"; repo = "railway"; rev = version; - hash = "sha256-Oj+y3BFAVzWUt+S0iOtKzFBiJGOGHuTj41FHHuOrWh8="; + hash = "sha256-cVCq7iVurX5SlCs7A5FSds6KaxMW3Qv/JIhhO69FTrk="; }; cargoDeps = rustPlatform.fetchCargoTarball { name = "${pname}-${src}"; inherit src; - hash = "sha256-//tr1CLn5Qoc+XMFzwNIvmsQD4SrjNRTX3hUPqlhwNs="; + hash = "sha256-J8KOmvSiUNBpt4qSFnNEwSKFJMSaTFd14G2INDYwPUE="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/misc/firefly-desktop/default.nix b/pkgs/applications/misc/firefly-desktop/default.nix index 0db1a801c5dac..6e32f7431b642 100644 --- a/pkgs/applications/misc/firefly-desktop/default.nix +++ b/pkgs/applications/misc/firefly-desktop/default.nix @@ -27,7 +27,7 @@ in appimageTools.wrapType2 { description = "IOTA's New Wallet"; homepage = "https://firefly.iota.org"; license = licenses.asl20; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; platforms = [ "x86_64-linux" ]; mainProgram = "firefly-desktop"; }; diff --git a/pkgs/applications/misc/gramps/default.nix b/pkgs/applications/misc/gramps/default.nix index 7feab95b003a1..5ecab79226c8c 100644 --- a/pkgs/applications/misc/gramps/default.nix +++ b/pkgs/applications/misc/gramps/default.nix @@ -69,7 +69,7 @@ buildPythonApplication rec { ; propagatedBuildInputs = with pythonPackages; [ - bsddb3 + berkeleydb pyicu pygobject3 pycairo diff --git a/pkgs/applications/misc/keepassxc/default.nix b/pkgs/applications/misc/keepassxc/default.nix index abeaa45047aa0..ec633ac7514b9 100644 --- a/pkgs/applications/misc/keepassxc/default.nix +++ b/pkgs/applications/misc/keepassxc/default.nix @@ -41,13 +41,13 @@ stdenv.mkDerivation rec { pname = "keepassxc"; - version = "2.7.8"; + version = "2.7.9"; src = fetchFromGitHub { owner = "keepassxreboot"; repo = "keepassxc"; rev = version; - hash = "sha256-Gb5/CPhn/phVVvz9BFv7rb12n/P3rPNl5r2gA+E5b0o="; + hash = "sha256-rnietdc8eDNTag0GaZ8VJb28JsKKD/qrQ0Gg6FMWpr0="; }; env.NIX_CFLAGS_COMPILE = lib.optionalString stdenv.cc.isClang (toString [ diff --git a/pkgs/applications/misc/librecad/default.nix b/pkgs/applications/misc/librecad/default.nix index eb2e3c136cf4c..3ce387c410d9f 100644 --- a/pkgs/applications/misc/librecad/default.nix +++ b/pkgs/applications/misc/librecad/default.nix @@ -72,7 +72,7 @@ mkDerivation rec { description = "2D CAD package based on Qt"; homepage = "https://librecad.org"; license = licenses.gpl2Only; - maintainers = with maintainers; [ kiwi viric ]; + maintainers = with maintainers; [ viric ]; platforms = platforms.linux; }; } diff --git a/pkgs/applications/misc/maliit-framework/default.nix b/pkgs/applications/misc/maliit-framework/default.nix index 2f30e805c5848..f730e9265d257 100644 --- a/pkgs/applications/misc/maliit-framework/default.nix +++ b/pkgs/applications/misc/maliit-framework/default.nix @@ -73,6 +73,6 @@ mkDerivation rec { mainProgram = "maliit-server"; homepage = "http://maliit.github.io/"; license = licenses.lgpl21Plus; - maintainers = with maintainers; [ samueldr ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/applications/misc/maliit-keyboard/default.nix b/pkgs/applications/misc/maliit-keyboard/default.nix index 9613639b0f174..c315b5251cea0 100644 --- a/pkgs/applications/misc/maliit-keyboard/default.nix +++ b/pkgs/applications/misc/maliit-keyboard/default.nix @@ -69,6 +69,6 @@ mkDerivation rec { mainProgram = "maliit-keyboard"; homepage = "http://maliit.github.io/"; license = with licenses; [ lgpl3Only bsd3 cc-by-30 ]; - maintainers = with maintainers; [ samueldr ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/applications/misc/mobilecoin-wallet/default.nix b/pkgs/applications/misc/mobilecoin-wallet/default.nix index 6c4eb8ff3ebc2..42bbae72af5ae 100644 --- a/pkgs/applications/misc/mobilecoin-wallet/default.nix +++ b/pkgs/applications/misc/mobilecoin-wallet/default.nix @@ -33,7 +33,7 @@ in appimageTools.wrapType2 { description = "User-friendly desktop wallet with support for transaction history, encrypted contact book, gift codes, and payments"; homepage = "https://github.com/mobilecoinofficial/desktop-wallet"; license = licenses.gpl3Only; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; mainProgram = "mobilecoin-wallet"; platforms = [ "x86_64-linux" ]; }; diff --git a/pkgs/applications/misc/obsidian/default.nix b/pkgs/applications/misc/obsidian/default.nix index ff7c789a6eb5f..000d94bbeec39 100644 --- a/pkgs/applications/misc/obsidian/default.nix +++ b/pkgs/applications/misc/obsidian/default.nix @@ -8,6 +8,7 @@ , writeScript , undmg , unzip +, commandLineArgs ? "" }: let inherit (stdenv.hostPlatform) system; @@ -52,7 +53,8 @@ let mkdir -p $out/bin makeWrapper ${electron}/bin/electron $out/bin/obsidian \ --add-flags $out/share/obsidian/app.asar \ - --add-flags "\''${NIXOS_OZONE_WL:+\''${WAYLAND_DISPLAY:+--ozone-platform=wayland}}" + --add-flags "\''${NIXOS_OZONE_WL:+\''${WAYLAND_DISPLAY:+--ozone-platform=wayland}}" \ + --add-flags ${lib.escapeShellArg commandLineArgs} install -m 444 -D resources/app.asar $out/share/obsidian/app.asar install -m 444 -D resources/obsidian.asar $out/share/obsidian/obsidian.asar install -m 444 -D "${desktopItem}/share/applications/"* \ diff --git a/pkgs/applications/misc/organicmaps/default.nix b/pkgs/applications/misc/organicmaps/default.nix index 2dcaeda72a74c..5388b7b7485eb 100644 --- a/pkgs/applications/misc/organicmaps/default.nix +++ b/pkgs/applications/misc/organicmaps/default.nix @@ -29,13 +29,13 @@ let }; in stdenv.mkDerivation rec { pname = "organicmaps"; - version = "2024.06.02-12"; + version = "2024.06.19-3"; src = fetchFromGitHub { owner = "organicmaps"; repo = "organicmaps"; rev = "${version}-android"; - hash = "sha256-TOKBEnSa9kzfGsiNpMllLjcJtdhYfz9m4uAg0lUF8Z4="; + hash = "sha256-LB3yLBoO6nXRvfuWWB2JofeAgQQFtEgqNo2QFQ3k/vc="; fetchSubmodules = true; }; diff --git a/pkgs/applications/misc/sticky/default.nix b/pkgs/applications/misc/sticky/default.nix index 62c3c8394b6aa..5d9cf35957829 100644 --- a/pkgs/applications/misc/sticky/default.nix +++ b/pkgs/applications/misc/sticky/default.nix @@ -15,13 +15,13 @@ stdenv.mkDerivation rec { pname = "sticky"; - version = "1.20"; + version = "1.21"; src = fetchFromGitHub { owner = "linuxmint"; repo = pname; rev = version; - hash = "sha256-HzTXaJgDu72pWM0mGNNBy2yFB0u0rqATFK9JzyOw8oE="; + hash = "sha256-EH5EyvI3iAZr+aSV3DKM9RLkPmUcwKKXlOXSU0ECsPI="; }; postPatch = '' diff --git a/pkgs/applications/misc/thedesk/default.nix b/pkgs/applications/misc/thedesk/default.nix index 3fb11f883a2a6..b3292b8ebb5d0 100644 --- a/pkgs/applications/misc/thedesk/default.nix +++ b/pkgs/applications/misc/thedesk/default.nix @@ -48,7 +48,7 @@ stdenv.mkDerivation rec { homepage = "https://thedesk.top"; sourceProvenance = with sourceTypes; [ binaryNativeCode ]; license = licenses.gpl3Only; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; platforms = [ "x86_64-linux" ]; mainProgram = "thedesk"; }; diff --git a/pkgs/applications/misc/transifex-cli/default.nix b/pkgs/applications/misc/transifex-cli/default.nix index 05b344fc3e774..1be49361f5b5d 100644 --- a/pkgs/applications/misc/transifex-cli/default.nix +++ b/pkgs/applications/misc/transifex-cli/default.nix @@ -5,13 +5,13 @@ buildGoModule rec { pname = "transifex-cli"; - version = "1.6.13"; + version = "1.6.14"; src = fetchFromGitHub { owner = "transifex"; repo = "cli"; rev = "v${version}"; - sha256 = "sha256-SVXrrpkz2veA1L5p88iGQxHAUtySiYge0ffY2HyVCr0="; + sha256 = "sha256-yKkRoeq0hPYMjZcoL9h3l8FimnCjjVSlk9whliEnkzE="; }; vendorHash = "sha256-rcimaHr3fFeHSjZXw1w23cKISCT+9t8SgtPnY/uYGAU="; diff --git a/pkgs/applications/misc/upwork/default.nix b/pkgs/applications/misc/upwork/default.nix index 6375b2537258d..b5b15b48d7f88 100644 --- a/pkgs/applications/misc/upwork/default.nix +++ b/pkgs/applications/misc/upwork/default.nix @@ -63,6 +63,6 @@ stdenv.mkDerivation rec { sourceProvenance = with sourceTypes; [ binaryNativeCode ]; license = licenses.unfree; platforms = [ "x86_64-linux" ]; - maintainers = with maintainers; [ zakkor wolfangaukang ]; + maintainers = with maintainers; [ zakkor ]; }; } diff --git a/pkgs/applications/misc/whalebird/default.nix b/pkgs/applications/misc/whalebird/default.nix index c9de782c1aefa..15bd937506ee0 100644 --- a/pkgs/applications/misc/whalebird/default.nix +++ b/pkgs/applications/misc/whalebird/default.nix @@ -107,7 +107,7 @@ stdenv.mkDerivation rec { homepage = "https://whalebird.social"; changelog = "https://github.com/h3poteto/whalebird-desktop/releases/tag/v${version}"; license = licenses.gpl3Only; - maintainers = with maintainers; [ wolfangaukang weathercold ]; + maintainers = with maintainers; [ weathercold ]; platforms = [ "x86_64-linux" "aarch64-linux" ]; }; } diff --git a/pkgs/applications/networking/browsers/brave/default.nix b/pkgs/applications/networking/browsers/brave/default.nix index 5197f92d8c832..59b753192a2ae 100644 --- a/pkgs/applications/networking/browsers/brave/default.nix +++ b/pkgs/applications/networking/browsers/brave/default.nix @@ -6,17 +6,17 @@ callPackage ./make-brave.nix (removeAttrs args [ "callPackage" ]) if stdenv.isAarch64 then { pname = "brave"; - version = "1.66.118"; - url = "https://github.com/brave/brave-browser/releases/download/v1.66.118/brave-browser_1.66.118_arm64.deb"; - hash = "sha256-H2f6i86lDToHEkJ9JZCBp3tlpnI+zoFHY3YzLdp5lE4="; + version = "1.67.116"; + url = "https://github.com/brave/brave-browser/releases/download/v1.67.116/brave-browser_1.67.116_arm64.deb"; + hash = "sha256-YOvfXI+bSX3WZRBYXxGYhNme9NZl3ob/JYw6KshXn54="; platform = "aarch64-linux"; } else if stdenv.isx86_64 then { pname = "brave"; - version = "1.66.118"; - url = "https://github.com/brave/brave-browser/releases/download/v1.66.118/brave-browser_1.66.118_amd64.deb"; - hash = "sha256-r7lpEOxECOqJ23XxTHqSy6KhyNPRwOkuJvnZUuuBN4k="; + version = "1.67.116"; + url = "https://github.com/brave/brave-browser/releases/download/v1.67.116/brave-browser_1.67.116_amd64.deb"; + hash = "sha256-J4ap0bEAg5Q40U155AdAyzereBAo8Q/YDedDVqYvaT4="; platform = "x86_64-linux"; } else diff --git a/pkgs/applications/networking/browsers/chromium/upstream-info.nix b/pkgs/applications/networking/browsers/chromium/upstream-info.nix index 746cc6d6068bb..bbcfc835071c8 100644 --- a/pkgs/applications/networking/browsers/chromium/upstream-info.nix +++ b/pkgs/applications/networking/browsers/chromium/upstream-info.nix @@ -1,11 +1,11 @@ { stable = { chromedriver = { - hash_darwin = "sha256-OvRkO/mBXOk3IqZtvjKzOsBPBaZzq+YOb//SsXtgB9k="; + hash_darwin = "sha256-BWZaa1+3EUG11RmZjjbwG2UPZhlCpW3X9rkpiWrjgzM="; hash_darwin_aarch64 = - "sha256-ODR4fFW24yh4vIGcWjBVH+mfK+LECU/LXlWVq+NBNlI="; - hash_linux = "sha256-7vWid5i9bOyuGL2v9kdzv2yW2ZqWNNZDQScSDriaxxM="; - version = "126.0.6478.61"; + "sha256-wkUIFolVdvcnEQKKehKCyD5GS5Q42fVFKj/iHtiIj8I="; + hash_linux = "sha256-owTmkkgMcmuuhGv23uNjFjBdC49IJt+v6rjWu7xuchQ="; + version = "126.0.6478.62"; }; deps = { gn = { @@ -15,8 +15,8 @@ version = "2024-05-13"; }; }; - hash = "sha256-cB2jrasrtaFWM8tpG9leuC+jUAvoU8g5977cn4r7rbw="; - version = "126.0.6478.61"; + hash = "sha256-sXP+/KXDoy3QnRoa9acGbsXKVCPspyNGtZTLMHBqxvw="; + version = "126.0.6478.114"; }; ungoogled-chromium = { deps = { @@ -27,11 +27,11 @@ version = "2024-05-13"; }; ungoogled-patches = { - hash = "sha256-vQrUQMmNSw+b9nPzP1RmkncQHasmZvnxNHjfiPoMUXo="; - rev = "126.0.6478.61-1"; + hash = "sha256-lj/XYWkEo7M1i3D5e1MVXTXh02U55lNoo+sxKpu8FNc="; + rev = "126.0.6478.114-1"; }; }; - hash = "sha256-cB2jrasrtaFWM8tpG9leuC+jUAvoU8g5977cn4r7rbw="; - version = "126.0.6478.61"; + hash = "sha256-sXP+/KXDoy3QnRoa9acGbsXKVCPspyNGtZTLMHBqxvw="; + version = "126.0.6478.114"; }; } diff --git a/pkgs/applications/networking/browsers/firefox-bin/release_sources.nix b/pkgs/applications/networking/browsers/firefox-bin/release_sources.nix index 17a35eb797ac0..30cb040f3ed8a 100644 --- a/pkgs/applications/networking/browsers/firefox-bin/release_sources.nix +++ b/pkgs/applications/networking/browsers/firefox-bin/release_sources.nix @@ -1,1025 +1,1025 @@ { - version = "127.0"; + version = "127.0.1"; sources = [ - { url = "https://archive.mozilla.org/pub/firefox/releases/127.0/linux-x86_64/ach/firefox-127.0.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/127.0.1/linux-x86_64/ach/firefox-127.0.1.tar.bz2"; locale = "ach"; arch = "linux-x86_64"; - sha256 = "0a67c7dde1f0ab336f61a81a7e00d16522f4f630f83bb212cbaa157daabf8ff7"; + sha256 = "a0c0adf6375c16fb0788c5d2547a58cdf4eb39fa2202490709e828143e253858"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/127.0/linux-x86_64/af/firefox-127.0.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/127.0.1/linux-x86_64/af/firefox-127.0.1.tar.bz2"; locale = "af"; arch = "linux-x86_64"; - sha256 = "5bca443b096fb57d232d607267cdac3b85ff4988c00b358fe770c10f5f8d1fe5"; + sha256 = "537284719c1ce1f5e5664bc0d7215d70e1ff8ceebebfd8f4de5aca7af6d078e8"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/127.0/linux-x86_64/an/firefox-127.0.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/127.0.1/linux-x86_64/an/firefox-127.0.1.tar.bz2"; locale = "an"; arch = "linux-x86_64"; - sha256 = "34e22b87df1217486c3f439fb6e8b443d9d315e4f3702754ca5160b108bedc05"; + sha256 = "ed24dab4577adad1932474182bfc1a4bbc421879b295234c9bfcf12201254e45"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/127.0/linux-x86_64/ar/firefox-127.0.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/127.0.1/linux-x86_64/ar/firefox-127.0.1.tar.bz2"; locale = "ar"; arch = "linux-x86_64"; - sha256 = "103d49634a1bbbdce20bde4b11185a2607aa4712027e25a9c983b37479290282"; + sha256 = "7a5d3b7a6519b1a82935486f21ee8bf6802a6bbd5fcc2035674b9881b5b0cba0"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/127.0/linux-x86_64/ast/firefox-127.0.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/127.0.1/linux-x86_64/ast/firefox-127.0.1.tar.bz2"; locale = "ast"; arch = "linux-x86_64"; - sha256 = "637198f8fa350a53b3ea9f284e9bf9006523f577cf7814add964b47458f05df9"; + sha256 = "b3219057f2b99d0d84225af34dbd35988cf3d462df2e69e3f57aba9bbc87e093"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/127.0/linux-x86_64/az/firefox-127.0.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/127.0.1/linux-x86_64/az/firefox-127.0.1.tar.bz2"; locale = "az"; arch = "linux-x86_64"; - sha256 = "450e09b45349230677aa82c37a5a7e32fe2f806a2edf821566836aaf8d80f011"; + sha256 = "d16a676d90b8290f2a97fc09cf7edc6ba5c57a33b4b626163a1a2ffc559c444e"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/127.0/linux-x86_64/be/firefox-127.0.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/127.0.1/linux-x86_64/be/firefox-127.0.1.tar.bz2"; locale = "be"; arch = "linux-x86_64"; - sha256 = "c82606883df11382810cf2547e43ba12cec76de58deea725c5c511e078f99ae8"; + sha256 = "9697faa8a0fef7fcf2149d4e27a943b5576ddd1f166d1e9e3436019306b51c0d"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/127.0/linux-x86_64/bg/firefox-127.0.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/127.0.1/linux-x86_64/bg/firefox-127.0.1.tar.bz2"; locale = "bg"; arch = "linux-x86_64"; - sha256 = "6171b5ca99b35247578c42f857f64e3fd618121314bb9b28d6125dca747502ec"; + sha256 = "c156390b7821f8e9b818273ef4645b18b0370fb4eff2685c386b28e26035b1ba"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/127.0/linux-x86_64/bn/firefox-127.0.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/127.0.1/linux-x86_64/bn/firefox-127.0.1.tar.bz2"; locale = "bn"; arch = "linux-x86_64"; - sha256 = "c22061db0e6f8659d4d1372b67d8507d66fcc1427bcb310ebcc665cd958c6740"; + sha256 = "a237d94d62d8310ad6a7f4b44e8560aa70869bacec5eb1ff03ad10b1fa204099"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/127.0/linux-x86_64/br/firefox-127.0.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/127.0.1/linux-x86_64/br/firefox-127.0.1.tar.bz2"; locale = "br"; arch = "linux-x86_64"; - sha256 = "335fd937e3d15b204ab09aafff283b4cd44de2fe17417792568075d86b970fb8"; + sha256 = "0e8e14857e6fe8f07dab736ca94704f042488aa66f09a34472d2e4db68a1d7fc"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/127.0/linux-x86_64/bs/firefox-127.0.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/127.0.1/linux-x86_64/bs/firefox-127.0.1.tar.bz2"; locale = "bs"; arch = "linux-x86_64"; - sha256 = "1ea048261669b711f457f8e52ae96af6a05664ef94cb64a9163371ff42eff29b"; + sha256 = "a4533e64c5b28e3b721f6b5d27b226fbf25c781335af9541249a2d4805fdda3c"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/127.0/linux-x86_64/ca-valencia/firefox-127.0.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/127.0.1/linux-x86_64/ca-valencia/firefox-127.0.1.tar.bz2"; locale = "ca-valencia"; arch = "linux-x86_64"; - sha256 = "c233e6274cab4131c5ffb89e10a626a8ea47cf2a64b092b40b41687786746250"; + sha256 = "c06fe9609e60476da4dd993eb56a282c85ba6f6b6ed0334e02ff6fa76792e243"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/127.0/linux-x86_64/ca/firefox-127.0.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/127.0.1/linux-x86_64/ca/firefox-127.0.1.tar.bz2"; locale = "ca"; arch = "linux-x86_64"; - sha256 = "5b9d75338e8f32336636c50cd5c0154538f962e75038a05a6aa6e6c67df653b5"; + sha256 = "3d7d25afeb97e4349798642fa2726e54d52a075dab40dc4c8bdf8c1a56a90e9f"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/127.0/linux-x86_64/cak/firefox-127.0.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/127.0.1/linux-x86_64/cak/firefox-127.0.1.tar.bz2"; locale = "cak"; arch = "linux-x86_64"; - sha256 = "51b7ceaf4edf5feb223c3ea1e2bb7d61c0871945e9ceffa294d5886f5286a57d"; + sha256 = "091c97903fe7ca206ba6e65432c303ed411e9dee5a58ce4acde78e092c255982"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/127.0/linux-x86_64/cs/firefox-127.0.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/127.0.1/linux-x86_64/cs/firefox-127.0.1.tar.bz2"; locale = "cs"; arch = "linux-x86_64"; - sha256 = "55cc585eb9b35429632dc659cd513c18609ce1a606aa0cfc2a4732980347e256"; + sha256 = "62b1713abeb49e6d2857cdd90ed881df1e406845a021166a2404110b85aca93c"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/127.0/linux-x86_64/cy/firefox-127.0.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/127.0.1/linux-x86_64/cy/firefox-127.0.1.tar.bz2"; locale = "cy"; arch = "linux-x86_64"; - sha256 = "f65c007d20f8f4ef76ddf8219e602e6bff78abbadf3eb61bd02067923c68f479"; + sha256 = "7471bdb9c4f8e0ae467674f4a0d962edd6c09514edc02b132c2d99b5684c6f66"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/127.0/linux-x86_64/da/firefox-127.0.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/127.0.1/linux-x86_64/da/firefox-127.0.1.tar.bz2"; locale = "da"; arch = "linux-x86_64"; - sha256 = "1ee5b89a11a020c3d88e81e7928fd42d71237f1233868919deee331ee49d4301"; + sha256 = "6bfa2559875407261eb3c92a369b40ca4c037a11e8e469625a994fb7121ee6e2"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/127.0/linux-x86_64/de/firefox-127.0.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/127.0.1/linux-x86_64/de/firefox-127.0.1.tar.bz2"; locale = "de"; arch = "linux-x86_64"; - sha256 = "54422d0272acb6f36c524669d371a797ceff24a451080cbf3338f41323bbe472"; + sha256 = "8f2b346f972edcba3f0b8e8cd5797ab688a9753b8c518696d5cb48a449d4430f"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/127.0/linux-x86_64/dsb/firefox-127.0.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/127.0.1/linux-x86_64/dsb/firefox-127.0.1.tar.bz2"; locale = "dsb"; arch = "linux-x86_64"; - sha256 = "080fce82c2e02455ad2d547e04001d497a972abcd20dd026b933e97c7f26ba55"; + sha256 = "954ba4d197384bd088890c5405f153b704b2377e9e831214da195c2d317c8cb4"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/127.0/linux-x86_64/el/firefox-127.0.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/127.0.1/linux-x86_64/el/firefox-127.0.1.tar.bz2"; locale = "el"; arch = "linux-x86_64"; - sha256 = "c1f8823b35b439985eb34dfb52c96e97e103f88d5a57e2defc142a46f5802925"; + sha256 = "fb2e5c257cf29c26b2a9b070324d6545ed2b97d4a7ca2454426081773cbc6fd8"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/127.0/linux-x86_64/en-CA/firefox-127.0.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/127.0.1/linux-x86_64/en-CA/firefox-127.0.1.tar.bz2"; locale = "en-CA"; arch = "linux-x86_64"; - sha256 = "7ea0e26d468e8c29a376d69cbe5ebda6e988b5eb7b21a05cc0ee3584ea3beafe"; + sha256 = "223758c5b6b45dd153655543909d18f0a4e9050d27b101a6609f6bf267c6ce2e"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/127.0/linux-x86_64/en-GB/firefox-127.0.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/127.0.1/linux-x86_64/en-GB/firefox-127.0.1.tar.bz2"; locale = "en-GB"; arch = "linux-x86_64"; - sha256 = "e9afa76b35c2857bea6d9ce325e3fd06a15768dc16c1f79c06e7feeae9f25c89"; + sha256 = "7018c6907f2de68555b167f880a68b37016f55f4b5ac5546faa376c43d4d0dca"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/127.0/linux-x86_64/en-US/firefox-127.0.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/127.0.1/linux-x86_64/en-US/firefox-127.0.1.tar.bz2"; locale = "en-US"; arch = "linux-x86_64"; - sha256 = "0d1a523f2348cb3068d792ca7cb31b209d0c6c8e4b95bcd708f4c096a88d0ae9"; + sha256 = "57564e6219f8f79418ba49d1e7a6edf44f8e253f777d0ae7de7dbff200c3d5f4"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/127.0/linux-x86_64/eo/firefox-127.0.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/127.0.1/linux-x86_64/eo/firefox-127.0.1.tar.bz2"; locale = "eo"; arch = "linux-x86_64"; - sha256 = "87005fe22463bf0e259bbc34679f5329e7937602864e5adf6c988435f290b846"; + sha256 = "24a0e8904f7b6cd7609706fde278ccb57cf076d13569f9ac1197b5cbb6f8c6b9"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/127.0/linux-x86_64/es-AR/firefox-127.0.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/127.0.1/linux-x86_64/es-AR/firefox-127.0.1.tar.bz2"; locale = "es-AR"; arch = "linux-x86_64"; - sha256 = "32f79d6b7c006ce348ee95c2d7c2870db7404513ca733761a9b31c583f2194d1"; + sha256 = "a29924f5eb27ce2e6907d23e32d95fb1f39c44e377703e558eabd10a0becc6ce"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/127.0/linux-x86_64/es-CL/firefox-127.0.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/127.0.1/linux-x86_64/es-CL/firefox-127.0.1.tar.bz2"; locale = "es-CL"; arch = "linux-x86_64"; - sha256 = "f110fccdae7d1b3f524ff22e3fd56117703382986993ff236aa8b2261507449f"; + sha256 = "a273ae90dcdac41bb83ed9024e0c1a7be9e6389c3e43af983b8d1f26f29d72cf"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/127.0/linux-x86_64/es-ES/firefox-127.0.tar.bz2"; 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+ sha256 = "2f90f140ffb61f3990bed58bfa238aeccb7b4bc9364b3fe892adfedfa1eb1b08"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/127.0/linux-i686/uz/firefox-127.0.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/127.0.1/linux-i686/uz/firefox-127.0.1.tar.bz2"; locale = "uz"; arch = "linux-i686"; - sha256 = "01d433fde589aa3d59153bb3b24f16d622d1856a93f89e436fe96d13ae6652dc"; + sha256 = "6efec5797d0e1cb0ef5971d5de550029a507ff8337d3f33baa14ad6cde638040"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/127.0/linux-i686/vi/firefox-127.0.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/127.0.1/linux-i686/vi/firefox-127.0.1.tar.bz2"; locale = "vi"; arch = "linux-i686"; - sha256 = "ab6eeb62c245a2f65f67e155d838cd63d0a01d52f2dbe6aa6fea71b344015f23"; + sha256 = "e0a9d3a491019eca75690c814943c326cc3403d1fda9321c7103f38e343a9338"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/127.0/linux-i686/xh/firefox-127.0.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/127.0.1/linux-i686/xh/firefox-127.0.1.tar.bz2"; locale = "xh"; arch = "linux-i686"; - sha256 = "e364bc82c577582f453fa020a9e807e290fb29e6112cfccd76277f6437497890"; + sha256 = "ec0e2949de14be425f8d621599a710d1b9e17d0dfa657693f3ef15c599dffa7a"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/127.0/linux-i686/zh-CN/firefox-127.0.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/127.0.1/linux-i686/zh-CN/firefox-127.0.1.tar.bz2"; locale = "zh-CN"; arch = "linux-i686"; - sha256 = "d73dcc173856e93246692b15ec8bcef5a55db927498d38ac42b67dfc135724fa"; + sha256 = "769b437188b4b0869ee385e74898598e07c98b251a948f7a85dd970260540f12"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/127.0/linux-i686/zh-TW/firefox-127.0.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/127.0.1/linux-i686/zh-TW/firefox-127.0.1.tar.bz2"; locale = "zh-TW"; arch = "linux-i686"; - sha256 = "2b088c518a8d1eb3a430384ac94ad37f2f8cbc5255715c2b9f75966985589392"; + sha256 = "0ab4ae5fc776cf44b88237fb84c5d13e4676bf330c07bd8d1b3a1d220d12292e"; } ]; } diff --git a/pkgs/applications/networking/browsers/firefox/packages.nix b/pkgs/applications/networking/browsers/firefox/packages.nix index 2cd6a8977f8ed..c34124cfb1b1b 100644 --- a/pkgs/applications/networking/browsers/firefox/packages.nix +++ b/pkgs/applications/networking/browsers/firefox/packages.nix @@ -3,10 +3,10 @@ { firefox = buildMozillaMach rec { pname = "firefox"; - version = "127.0"; + version = "127.0.1"; src = fetchurl { url = "mirror://mozilla/firefox/releases/${version}/source/firefox-${version}.source.tar.xz"; - sha512 = "5a17bce357e7f445c37540115f2c131ad5a055c0cf04f20bc2eaca18f8d241a99ac76739d172b38f2ad2681633f901a0a15893801082ac5db9e20e31fc8b8291"; + sha512 = "13df770a89b703033601cab56892a2fc62427521936b366893008e68cd1f48d7b18917a3cede23764d024208819037ad0d28c2d4b73b99fdc204cbd53bb1297e"; }; extraPatches = [ diff --git a/pkgs/applications/networking/browsers/librewolf/src.json b/pkgs/applications/networking/browsers/librewolf/src.json index 4534ceb4313b5..67fed12e16538 100644 --- a/pkgs/applications/networking/browsers/librewolf/src.json +++ b/pkgs/applications/networking/browsers/librewolf/src.json @@ -1,15 +1,15 @@ { - "packageVersion": "126.0.1-1", + "packageVersion": "127.0-1", "source": { - "rev": "126.0.1-1", - "sha256": "0cac80073vkzd85ai9rbnwixs1h9bpy4dj2ri6jxdlqsy5d663km" + "rev": "127.0-1", + "sha256": "0zif9b7ky423bg3cf3njyxl465hrbsha1f1hxpdgccql0id5qr7r" }, "settings": { "rev": "1debc2d30949baff2d1e7df23e87900f1987a8ae", "sha256": "12xgjv40mihbyfsah26vvdyb4yirydc1a884v2chnca4f5q00lc2" }, "firefox": { - "version": "126.0.1", - "sha512": "249605c4891ee9271def187d161369bd3ccbd347f5f0e175d0239aced3cb9ae9655d3c134b7705bda80ea1e63c0a2ee8eb4e76db0840019683376c00f20fc7ac" + "version": "127.0", + "sha512": "5a17bce357e7f445c37540115f2c131ad5a055c0cf04f20bc2eaca18f8d241a99ac76739d172b38f2ad2681633f901a0a15893801082ac5db9e20e31fc8b8291" } } diff --git a/pkgs/applications/networking/calls/default.nix b/pkgs/applications/networking/calls/default.nix index 77ed9916e16eb..cc9b60558e2c7 100644 --- a/pkgs/applications/networking/calls/default.nix +++ b/pkgs/applications/networking/calls/default.nix @@ -110,7 +110,7 @@ stdenv.mkDerivation rec { longDescription = "GNOME Calls is a phone dialer and call handler. Setting NixOS option `programs.calls.enable = true` is recommended."; homepage = "https://gitlab.gnome.org/GNOME/calls"; license = licenses.gpl3Plus; - maintainers = with maintainers; [ craigem lheckemann ]; + maintainers = with maintainers; [ craigem ]; platforms = platforms.linux; mainProgram = "gnome-calls"; }; diff --git a/pkgs/applications/networking/cluster/arkade/default.nix b/pkgs/applications/networking/cluster/arkade/default.nix index aeac7254ef017..b3f3dd21b9e17 100644 --- a/pkgs/applications/networking/cluster/arkade/default.nix +++ b/pkgs/applications/networking/cluster/arkade/default.nix @@ -7,13 +7,13 @@ buildGoModule rec { pname = "arkade"; - version = "0.11.15"; + version = "0.11.16"; src = fetchFromGitHub { owner = "alexellis"; repo = "arkade"; rev = version; - hash = "sha256-tfJ9LTPu8B6xlIkAKmbl2d2GLY9p4VcOQGOC5TTx9Cs="; + hash = "sha256-i/wEgUK4NxFonZXJKuhLHBgCXQ25A/UDyavhJdjuJ+M="; }; CGO_ENABLED = 0; diff --git a/pkgs/applications/networking/cluster/atmos/default.nix b/pkgs/applications/networking/cluster/atmos/default.nix index 9fc3a6f742520..3e9dbe040c305 100644 --- a/pkgs/applications/networking/cluster/atmos/default.nix +++ b/pkgs/applications/networking/cluster/atmos/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "atmos"; - version = "1.79.0"; + version = "1.81.0"; src = fetchFromGitHub { owner = "cloudposse"; repo = pname; rev = "v${version}"; - sha256 = "sha256-bYeqeR+3EkEE7DtdQnjvVygssmHzn0WqOb+m0LE4hjo="; + sha256 = "sha256-drreGXCYpjF1UD1OUzuGh2rezEhHw7Zq0Y6JujLsMMk="; }; - vendorHash = "sha256-jI0gBRRNcL3tkfqPRazp4TdfsUEgdXtUDAujVwH1QMk="; + vendorHash = "sha256-ojl+dGrj+zmE2lqlclq3jA0K6AXdi9Ofhd4GA6nVrDo="; ldflags = [ "-s" "-w" "-X github.com/cloudposse/atmos/cmd.Version=v${version}" ]; diff --git a/pkgs/applications/networking/cluster/glooctl/default.nix b/pkgs/applications/networking/cluster/glooctl/default.nix index 13f8b9ce64425..c492db4688ea0 100644 --- a/pkgs/applications/networking/cluster/glooctl/default.nix +++ b/pkgs/applications/networking/cluster/glooctl/default.nix @@ -6,13 +6,13 @@ buildGoModule rec { pname = "glooctl"; - version = "1.16.15"; + version = "1.16.16"; src = fetchFromGitHub { owner = "solo-io"; repo = "gloo"; rev = "v${version}"; - hash = "sha256-VWtn0PyGYXURQmEhI0LbhIuEIbFLkhNWWI7c3wdh6H8="; + hash = "sha256-N7Yao/lRyzmbFDIqfvQoZXKGbYPxlA8HCD3tPkl8RKk="; }; vendorHash = "sha256-wLB+sUaSOBb1VLx/iwlU4U6LKakUP+GbhdWfjlvCu84="; diff --git a/pkgs/applications/networking/cluster/k9s/default.nix b/pkgs/applications/networking/cluster/k9s/default.nix index 274bff5d253fe..c83566170d0f3 100644 --- a/pkgs/applications/networking/cluster/k9s/default.nix +++ b/pkgs/applications/networking/cluster/k9s/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "k9s"; - version = "0.32.4"; + version = "0.32.5"; src = fetchFromGitHub { owner = "derailed"; repo = "k9s"; rev = "v${version}"; - hash = "sha256-0MAnN1ekzHLs25EspDN3xacmDvwXGwKO/5RsCMMwTI8="; + hash = "sha256-H0PimkPXs2/iirOpN82az3Bge71k1RZOhMtr0UmGOy8="; }; ldflags = [ @@ -23,7 +23,7 @@ buildGoModule rec { proxyVendor = true; - vendorHash = "sha256-Eaz56iU862KDAlVPuMo8qPuWSFCxEFcJ3Qubl9TUiyI="; + vendorHash = "sha256-U/tIsYpoog3S8V2yQGGqaQ+Av7TfvCYt3zn74qWuQKs="; # TODO investigate why some config tests are failing doCheck = !(stdenv.isDarwin && stdenv.isAarch64); diff --git a/pkgs/applications/networking/cluster/kops/default.nix b/pkgs/applications/networking/cluster/kops/default.nix index bcd0b78f7a523..5fa09dcb2ce41 100644 --- a/pkgs/applications/networking/cluster/kops/default.nix +++ b/pkgs/applications/networking/cluster/kops/default.nix @@ -62,6 +62,12 @@ rec { }; kops_1_28 = mkKops rec { + version = "1.28.5"; + sha256 = "sha256-spw3lTrp6RlxkTNoZ/3Yz/U2tdvBnwiYORS2QtOSX9k="; + rev = "v${version}"; + }; + + kops_1_29 = mkKops rec { version = "1.29.0"; sha256 = "sha256-YneB9pc4IR+tYPRFE5CS+4JK/kPOHMo5/70A3k1x1tg="; rev = "v${version}"; diff --git a/pkgs/applications/networking/cluster/kubeseal/default.nix b/pkgs/applications/networking/cluster/kubeseal/default.nix index af646127fba59..10dc9cecfbfc6 100644 --- a/pkgs/applications/networking/cluster/kubeseal/default.nix +++ b/pkgs/applications/networking/cluster/kubeseal/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "kubeseal"; - version = "0.26.3"; + version = "0.27.0"; src = fetchFromGitHub { owner = "bitnami-labs"; repo = "sealed-secrets"; rev = "v${version}"; - sha256 = "sha256-2MU1/znfp2LfojfgFPovgcJbZLtqY+6O7YKZNhPIT8k="; + sha256 = "sha256-Ja+z+QmdU37RC9WIczlmzJWN6enhks3jDJLQMV+kfCY="; }; - vendorHash = "sha256-B50+G29ze1jPBTlFA0nvMfh25t4Xb3YCxEkPkjxKMj0="; + vendorHash = "sha256-QSF6/8FLXJrM5LAWW0NgDP6U0om2lXsOGP9qDasz+2c="; subPackages = [ "cmd/kubeseal" ]; diff --git a/pkgs/applications/networking/cluster/nixops/plugins/nixops-digitalocean.nix b/pkgs/applications/networking/cluster/nixops/plugins/nixops-digitalocean.nix index 094f493dbb720..8a0d2d4c49338 100644 --- a/pkgs/applications/networking/cluster/nixops/plugins/nixops-digitalocean.nix +++ b/pkgs/applications/networking/cluster/nixops/plugins/nixops-digitalocean.nix @@ -48,6 +48,6 @@ buildPythonPackage { description = "NixOps Digitalocean plugin"; homepage = "https://github.com/nix-community/nixops-digitalocean"; license = licenses.lgpl3Only; - maintainers = with maintainers; [ kiwi ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/applications/networking/cluster/opentofu/default.nix b/pkgs/applications/networking/cluster/opentofu/default.nix index ed2d78f6c79e2..5125f318ee007 100644 --- a/pkgs/applications/networking/cluster/opentofu/default.nix +++ b/pkgs/applications/networking/cluster/opentofu/default.nix @@ -58,7 +58,6 @@ let changelog = "https://github.com/opentofu/opentofu/blob/v${version}/CHANGELOG.md"; license = licenses.mpl20; maintainers = with maintainers; [ - gmemstr nickcao zowoq ]; diff --git a/pkgs/applications/networking/cluster/temporal-cli/default.nix b/pkgs/applications/networking/cluster/temporal-cli/default.nix index fe23809bf5d3e..4bf6a34f1c0bd 100644 --- a/pkgs/applications/networking/cluster/temporal-cli/default.nix +++ b/pkgs/applications/networking/cluster/temporal-cli/default.nix @@ -17,16 +17,16 @@ let tctl-next = buildGoModule rec { pname = "tctl-next"; - version = "0.12.0"; + version = "0.13.0"; src = fetchFromGitHub { owner = "temporalio"; repo = "cli"; rev = "v${version}"; - hash = "sha256-rqwDubKNBvtJ4rTQheCoSIcbfQZQN3iD99PcZewmx5c="; + hash = "sha256-2zk+B+GomLZwep5LNRpWJj8JjFC0OxAl1XhAv+8b2kc="; }; - vendorHash = "sha256-bnmlh11gtNdgcrI20gjNqxWB+OQTv0b9lgETucoBaXc="; + vendorHash = "sha256-NLteuVOswIw2ModdE0Ak4XmApkHLoYDt6SDAZGsgwBk="; inherit overrideModAttrs; diff --git a/pkgs/applications/networking/cluster/werf/default.nix b/pkgs/applications/networking/cluster/werf/default.nix deleted file mode 100644 index b7442da2aedca..0000000000000 --- a/pkgs/applications/networking/cluster/werf/default.nix +++ /dev/null @@ -1,97 +0,0 @@ -{ lib -, stdenv -, buildGoModule -, fetchFromGitHub -, installShellFiles -, btrfs-progs -, testers -, werf -}: - -buildGoModule rec { - pname = "werf"; - version = "2.5.0"; - - src = fetchFromGitHub { - owner = "werf"; - repo = "werf"; - rev = "v${version}"; - hash = "sha256-dZwZzBisQUmOz1lij6L0NHigXW2DtUd6s86sHYq8UPA="; - }; - - vendorHash = "sha256-cWOnIEvVer+USqNQJmhZ7pYSJfzY2xjq2oTxRd/y94w="; - - proxyVendor = true; - - subPackages = [ "cmd/werf" ]; - - nativeBuildInputs = [ installShellFiles ]; - - buildInputs = lib.optionals stdenv.isLinux [ btrfs-progs ] - ++ lib.optionals stdenv.hostPlatform.isGnu [ stdenv.cc.libc.static ]; - - CGO_ENABLED = if stdenv.isLinux then 1 else 0; - - ldflags = [ - "-s" - "-w" - "-X github.com/werf/werf/v2/pkg/werf.Version=${src.rev}" - ] ++ lib.optionals (CGO_ENABLED == 1) [ - "-extldflags=-static" - "-linkmode external" - ]; - - tags = [ - "containers_image_openpgp" - "dfrunmount" - "dfrunnetwork" - "dfrunsecurity" - "dfssh" - ] ++ lib.optionals (CGO_ENABLED == 1) [ - "cni" - "exclude_graphdriver_devicemapper" - "netgo" - "no_devmapper" - "osusergo" - "static_build" - ]; - - preCheck = '' - # Test all targets. - unset subPackages - - # Remove tests that require external services. - rm -rf \ - integration/suites \ - pkg/true_git/*test.go \ - test/e2e - '' + lib.optionalString (CGO_ENABLED == 0) '' - # A workaround for osusergo. - export USER=nixbld - ''; - - postInstall = '' - installShellCompletion --cmd werf \ - --bash <($out/bin/werf completion --shell=bash) \ - --zsh <($out/bin/werf completion --shell=zsh) - ''; - - passthru.tests.version = testers.testVersion { - package = werf; - command = "werf version"; - version = src.rev; - }; - - meta = with lib; { - description = "GitOps delivery tool"; - mainProgram = "werf"; - longDescription = '' - The CLI tool gluing Git, Docker, Helm & Kubernetes with any CI system to - implement CI/CD and Giterminism. - ''; - homepage = "https://werf.io"; - changelog = "https://github.com/werf/werf/releases/tag/${src.rev}"; - license = licenses.asl20; - maintainers = with maintainers; [ azahi ]; - }; -} diff --git a/pkgs/applications/networking/feedreaders/gnome-feeds/default.nix b/pkgs/applications/networking/feedreaders/gnome-feeds/default.nix deleted file mode 100644 index def8bfb515200..0000000000000 --- a/pkgs/applications/networking/feedreaders/gnome-feeds/default.nix +++ /dev/null @@ -1,89 +0,0 @@ -{ lib -, callPackage - -, fetchFromGitLab - -, appstream -, gobject-introspection -, meson -, ninja -, pkg-config -, wrapGAppsHook3 - -, glib -, glib-networking -, gtk3 -, libhandy -, listparser ? callPackage ./listparser.nix { } -, webkitgtk -, python3 -}: - -python3.pkgs.buildPythonApplication rec { - pname = "gnome-feeds"; - version = "0.16.2"; - - src = fetchFromGitLab { - domain = "gitlab.gnome.org"; - owner = "World"; - repo = "gfeeds"; - rev = version; - sha256 = "sha256-66dwVR9owg050aHCHJek7jYnT+/yyCKo4AaUE0hCqBA="; - }; - - format = "other"; - - nativeBuildInputs = [ - appstream - glib # for glib-compile-schemas - gobject-introspection - meson - ninja - pkg-config - wrapGAppsHook3 - ]; - - buildInputs = [ - glib - glib-networking - gtk3 - libhandy - webkitgtk - ]; - - propagatedBuildInputs = with python3.pkgs; [ - beautifulsoup4 - python-dateutil - feedparser - html5lib - listparser - lxml - pillow - pygments - pygobject3 - readability-lxml - pytz - requests - ]; - - dontWrapGApps = true; - - preFixup = '' - makeWrapperArgs+=("''${gappsWrapperArgs[@]}") - ''; - - passthru = { - inherit listparser; - }; - - meta = with lib; { - description = "RSS/Atom feed reader for GNOME"; - mainProgram = "gfeeds"; - homepage = "https://gitlab.gnome.org/World/gfeeds"; - license = licenses.gpl3Plus; - maintainers = [ - maintainers.pbogdan - ]; - platforms = platforms.linux; - }; -} diff --git a/pkgs/applications/networking/feedreaders/gnome-feeds/listparser.nix b/pkgs/applications/networking/feedreaders/gnome-feeds/listparser.nix deleted file mode 100644 index 7dd2f752598fa..0000000000000 --- a/pkgs/applications/networking/feedreaders/gnome-feeds/listparser.nix +++ /dev/null @@ -1,33 +0,0 @@ -{ lib -, python3 -, fetchPypi -}: - -python3.pkgs.buildPythonPackage rec { - pname = "listparser"; - version = "0.18"; - - src = fetchPypi { - inherit pname version; - sha256 = "0hdqs1mmayw1r8yla43hgb4d9y3zqs5483vgf8j9ygczkd2wrq2b"; - }; - - propagatedBuildInputs = with python3.pkgs; [ - requests - six - ]; - - checkPhase = '' - ${python3.interpreter} lptest.py - ''; - - meta = with lib; { - description = "Parser for subscription lists"; - homepage = "https://github.com/kurtmckee/listparser"; - license = licenses.lgpl3Plus; - maintainers = [ - maintainers.pbogdan - ]; - platforms = platforms.linux; - }; -} diff --git a/pkgs/applications/networking/flexget/default.nix b/pkgs/applications/networking/flexget/default.nix index 1c2402f6495b3..5bdda1c1f4efa 100644 --- a/pkgs/applications/networking/flexget/default.nix +++ b/pkgs/applications/networking/flexget/default.nix @@ -5,7 +5,7 @@ python3.pkgs.buildPythonApplication rec { pname = "flexget"; - version = "3.11.37"; + version = "3.11.39"; pyproject = true; # Fetch from GitHub in order to use `requirements.in` @@ -13,7 +13,7 @@ python3.pkgs.buildPythonApplication rec { owner = "Flexget"; repo = "Flexget"; rev = "refs/tags/v${version}"; - hash = "sha256-bZd/iLEGF5+Zt4kKAvUmjHiPKA1v1FWf5/BEcsLy9MU="; + hash = "sha256-saNxs+Xdf6OTRRcMTceU8/ITcYzwtP8VqRKxsWyas+o="; }; postPatch = '' diff --git a/pkgs/applications/networking/instant-messengers/alfaview/default.nix b/pkgs/applications/networking/instant-messengers/alfaview/default.nix index 398a3457df9b9..681ba5cc59c98 100644 --- a/pkgs/applications/networking/instant-messengers/alfaview/default.nix +++ b/pkgs/applications/networking/instant-messengers/alfaview/default.nix @@ -75,7 +75,7 @@ stdenv.mkDerivation rec { homepage = "https://alfaview.com"; sourceProvenance = with sourceTypes; [ binaryNativeCode ]; license = licenses.unfree; - maintainers = with maintainers; [ wolfangaukang hexchen ]; + maintainers = with maintainers; [ hexchen ]; mainProgram = "alfaview"; platforms = [ "x86_64-linux" ]; }; diff --git a/pkgs/applications/networking/instant-messengers/cinny-desktop/Cargo.lock b/pkgs/applications/networking/instant-messengers/cinny-desktop/Cargo.lock index 0fe7233f63ad4..07f897d9fa662 100644 --- a/pkgs/applications/networking/instant-messengers/cinny-desktop/Cargo.lock +++ b/pkgs/applications/networking/instant-messengers/cinny-desktop/Cargo.lock @@ -18,6 +18,15 @@ dependencies = [ ] [[package]] +name = "aho-corasick" +version = "1.1.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "b2969dcb958b36655471fc61f7e416fa76033bdd4bfed0678d8fee1e2d07a1f0" +dependencies = [ + "memchr", +] + +[[package]] name = "alloc-no-stdlib" version = "2.0.4" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -33,12 +42,149 @@ dependencies = [ ] [[package]] +name = "android-tzdata" +version = "0.1.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "e999941b234f3131b00bc13c22d06e8c5ff726d1b6318ac7eb276997bbb4fef0" + +[[package]] +name = "android_system_properties" +version = "0.1.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "819e7219dbd41043ac279b19830f2efc897156490d7fd6ea916720117ee66311" +dependencies = [ + "libc", +] + +[[package]] name = "anyhow" version = "1.0.66" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "216261ddc8289130e551ddcd5ce8a064710c0d064a4d2895c67151c92b5443f6" [[package]] +name = "async-broadcast" +version = "0.5.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "7c48ccdbf6ca6b121e0f586cbc0e73ae440e56c67c30fa0873b4e110d9c26d2b" +dependencies = [ + "event-listener", + "futures-core", +] + +[[package]] +name = "async-channel" +version = "1.9.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "81953c529336010edd6d8e358f886d9581267795c61b19475b71314bffa46d35" +dependencies = [ + "concurrent-queue", + "event-listener", + "futures-core", +] + +[[package]] +name = "async-executor" +version = "1.6.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "4b0c4a4f319e45986f347ee47fef8bf5e81c9abc3f6f58dc2391439f30df65f0" +dependencies = [ + "async-lock", + "async-task", + "concurrent-queue", + "fastrand 2.0.1", + "futures-lite", + "slab", +] + +[[package]] +name = "async-fs" +version = "1.6.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = 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[[package]] @@ -246,8 +410,21 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "baf1de4339761588bc0619e3cbc0120ee582ebb74b53b4efbf79117bd2da40fd" [[package]] +name = "chrono" +version = "0.4.31" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "7f2c685bad3eb3d45a01354cedb7d5faa66194d1d58ba6e267a8de788f79db38" +dependencies = [ + "android-tzdata", + "iana-time-zone", + "num-traits", + "serde", + "windows-targets 0.48.5", +] + +[[package]] name = "cinny" -version = "3.1.0" +version = "3.2.0" dependencies = [ "serde", "serde_json", @@ -303,6 +480,15 @@ dependencies = [ ] [[package]] +name = "concurrent-queue" +version = "2.3.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "f057a694a54f12365049b0958a1685bb52d567f5593b355fbf685838e873d400" +dependencies = [ + "crossbeam-utils", +] + +[[package]] name = "convert_case" version = "0.4.0" source = "registry+https://github.com/rust-lang/crates.io-index" 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"hermit-abi 0.3.3", + "libc", + "windows-sys 0.48.0", +] + +[[package]] +name = "ipnet" +version = "2.9.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "8f518f335dce6725a761382244631d86cf0ccb2863413590b31338feb467f9c3" + +[[package]] name = "itoa" version = "0.4.8" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -1213,12 +1662,13 @@ dependencies = [ [[package]] name = "json-patch" -version = "0.2.7" +version = "1.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "eb3fa5a61630976fc4c353c70297f2e93f1930e3ccee574d59d618ccbd5154ce" +checksum = "55ff1e1486799e3f64129f8ccad108b38290df9cd7015cd31bed17239f0789d6" dependencies = [ "serde", "serde_json", + "thiserror", "treediff", ] @@ -1229,7 +1679,20 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "1ea8e9c6e031377cff82ee3001dc8026cdf431ed4e2e6b51f98ab8c73484a358" dependencies = [ "cssparser", - "html5ever", + "html5ever 0.25.2", + "matches", + "selectors", +] + +[[package]] +name = "kuchikiki" +version = "0.8.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "f29e4755b7b995046f510a7520c42b2fed58b77bd94d5a87a8eb43d2fd126da8" +dependencies = [ + "cssparser", + "html5ever 0.26.0", + "indexmap 1.9.2", "matches", "selectors", ] @@ -1266,18 +1729,9 @@ dependencies = [ [[package]] name = "libc" -version = "0.2.138" +version = "0.2.149" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "db6d7e329c562c5dfab7a46a2afabc8b987ab9a4834c9d1ca04dc54c1546cef8" - -[[package]] -name = "libdbus-sys" -version = "0.2.2" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c185b5b7ad900923ef3a8ff594083d4d9b5aea80bb4f32b8342363138c0d456b" -dependencies = [ - "pkg-config", -] +checksum = "a08173bc88b7955d1b3145aa561539096c421ac8debde8cbc3612ec635fee29b" [[package]] name = "libloading" @@ -1299,6 +1753,12 @@ dependencies = [ ] [[package]] +name = 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"registry+https://github.com/rust-lang/crates.io-index" +checksum = "7a2629bb1404f3d34c2e921f21fd34ba00b206124c81f65c50b43b6aaefeb016" +dependencies = [ + "log", + "phf 0.10.1", + "phf_codegen 0.10.0", "string_cache", "string_cache_codegen", "tendril", @@ -1380,7 +1851,7 @@ version = "0.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "8263075bb86c5a1b1427b5ae862e8889656f126e9f77c484496e8b47cf5c5558" dependencies = [ - "regex-automata", + "regex-automata 0.1.10", ] [[package]] @@ -1405,6 +1876,21 @@ dependencies = [ ] [[package]] +name = "memoffset" +version = "0.7.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "5de893c32cde5f383baa4c04c5d6dbdd735cfd4a794b0debdb2bb1b421da5ff4" +dependencies = [ + "autocfg", +] + +[[package]] +name = "mime" +version = "0.3.17" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "6877bb514081ee2a7ff5ef9de3281f14a4dd4bceac4c09388074a6b5df8a139a" + +[[package]] name = "minisign-verify" version = "0.2.1" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -1420,6 +1906,18 @@ dependencies = [ ] [[package]] +name = "mio" +version = "0.8.9" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "3dce281c5e46beae905d4de1870d8b1509a9142b62eedf18b443b011ca8343d0" +dependencies = [ + "libc", + "log", + "wasi 0.11.0+wasi-snapshot-preview1", + "windows-sys 0.48.0", +] + +[[package]] name = "native-tls" version = "0.2.11" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -1472,6 +1970,18 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "e4a24736216ec316047a1fc4252e27dabb04218aa4a3f37c6e7ddbf1f9782b54" [[package]] +name = "nix" +version = "0.26.4" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "598beaf3cc6fdd9a5dfb1630c2800c7acd31df7aaf0f565796fba2b53ca1af1b" +dependencies = [ + "bitflags", + "cfg-if", + "libc", + "memoffset 0.7.1", +] + +[[package]] name = "nodrop" version = "0.1.14" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -1483,9 +1993,12 @@ version = "4.6.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "5cc2e370356160e41aba3fd0fbac26d86a89ddd2ac4300c03de999a77cfa2509" dependencies = [ - "dbus", "mac-notification-sys", + "serde", "tauri-winrt-notification", + "zbus", + "zvariant", + "zvariant_derive", ] [[package]] @@ -1534,7 +2047,7 @@ version = "1.14.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "f6058e64324c71e02bc2b150e4f3bc8286db6c83092132ffa3f6b1eab0f9def5" dependencies = [ - "hermit-abi", + "hermit-abi 0.1.19", "libc", ] @@ -1556,7 +2069,7 @@ dependencies = [ "proc-macro-crate", "proc-macro2", "quote", - "syn", + "syn 1.0.105", ] [[package]] @@ -1637,7 +2150,7 @@ checksum = "b501e44f11665960c7e7fcf062c7d96a14ade4aa98116c004b2e37b5be7d736c" dependencies = [ "proc-macro2", "quote", - "syn", + "syn 1.0.105", ] [[package]] @@ -1660,6 +2173,16 @@ dependencies = [ ] [[package]] +name = "ordered-stream" +version = "0.2.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "9aa2b01e1d916879f73a53d01d1d6cee68adbb31d6d9177a8cfce093cced1d50" +dependencies = [ + "futures-core", + "pin-project-lite", +] + +[[package]] name = "os_info" version = "3.5.1" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -1712,6 +2235,12 @@ dependencies = [ ] [[package]] +name = "parking" +version = "2.2.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "bb813b8af86854136c6922af0598d719255ecb2179515e6e7730d468f05c9cae" + +[[package]] name = "parking_lot" version = "0.12.1" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -1735,12 +2264,6 @@ dependencies = [ ] [[package]] -name = "paste" -version = "1.0.9" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = 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-1959,9 +2508,9 @@ checksum = "dbf0c48bc1d91375ae5c3cd81e3722dff1abcf81a30960240640d223f59fe0e5" [[package]] name = "proc-macro2" -version = "1.0.47" +version = "1.0.69" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5ea3d908b0e36316caf9e9e2c4625cdde190a7e6f440d794667ed17a1855e725" +checksum = "134c189feb4956b20f6f547d2cf727d4c0fe06722b20a0eec87ed445a97f92da" dependencies = [ "unicode-ident", ] @@ -1977,9 +2526,9 @@ dependencies = [ [[package]] name = "quote" -version = "1.0.21" +version = "1.0.33" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "bbe448f377a7d6961e30f5955f9b8d106c3f5e449d493ee1b125c1d43c2b5179" +checksum = "5267fca4496028628a95160fc423a33e8b2e6af8a5302579e322e4b520293cae" dependencies = [ "proc-macro2", ] @@ -2096,13 +2645,14 @@ dependencies = [ [[package]] name = "regex" -version = "1.7.0" +version = "1.9.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e076559ef8e241f2ae3479e36f97bd5741c0330689e217ad51ce2c76808b868a" +checksum = "12de2eff854e5fa4b1295edd650e227e9d8fb0c9e90b12e7f36d6a6811791a29" dependencies = [ - "aho-corasick", + "aho-corasick 1.1.2", "memchr", - "regex-syntax", + "regex-automata 0.3.7", + "regex-syntax 0.7.5", ] [[package]] @@ -2111,7 +2661,18 @@ version = "0.1.10" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "6c230d73fb8d8c1b9c0b3135c5142a8acee3a0558fb8db5cf1cb65f8d7862132" dependencies = [ - "regex-syntax", + "regex-syntax 0.6.28", +] + +[[package]] +name = "regex-automata" +version = "0.3.7" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "49530408a136e16e5b486e883fbb6ba058e8e4e8ae6621a77b048b314336e629" +dependencies = [ + "aho-corasick 1.1.2", + "memchr", + "regex-syntax 0.7.5", ] [[package]] @@ -2121,6 +2682,12 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "456c603be3e8d448b072f410900c09faf164fbce2d480456f50eea6e25f9c848" [[package]] +name = "regex-syntax" +version = "0.7.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "dbb5fb1acd8a1a18b3dd5be62d25485eb770e05afb408a9627d14d451bae12da" + +[[package]] name = "remove_dir_all" version = "0.5.3" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -2130,6 +2697,46 @@ dependencies = [ ] [[package]] +name = "reqwest" +version = "0.11.22" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "046cd98826c46c2ac8ddecae268eb5c2e58628688a5fc7a2643704a73faba95b" +dependencies = [ + "base64 0.21.5", + "bytes", + "encoding_rs", + "futures-core", + "futures-util", + "h2", + "http", + "http-body", + "hyper", + "hyper-tls", + "ipnet", + "js-sys", + "log", + "mime", + "native-tls", + "once_cell", + "percent-encoding", + "pin-project-lite", + "serde", + "serde_json", + "serde_urlencoded", + "system-configuration", + "tokio", + "tokio-native-tls", + "tokio-util", + "tower-service", + "url", + "wasm-bindgen", + "wasm-bindgen-futures", + "wasm-streams", + "web-sys", + "winreg 0.50.0", +] + +[[package]] name = "rfd" version = "0.10.0" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -2172,6 +2779,20 @@ dependencies = [ ] [[package]] +name = "rustix" +version = "0.37.27" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "fea8ca367a3a01fe35e6943c400addf443c0f57670e6ec51196f71a4b8762dd2" +dependencies = [ + "bitflags", + "errno", + "io-lifetimes", + "libc", + "linux-raw-sys", + "windows-sys 0.48.0", +] + +[[package]] name = "rustversion" version = "1.0.9" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -2256,7 +2877,7 @@ dependencies = [ "log", "matches", "phf 0.8.0", - "phf_codegen", + "phf_codegen 0.8.0", "precomputed-hash", "servo_arc", "smallvec", @@ -2292,29 +2913,29 @@ dependencies = [ [[package]] name = "serde" -version = "1.0.152" +version = 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"registry+https://github.com/rust-lang/crates.io-index" -checksum = "e182d6ec6f05393cc0e5ed1bf81ad6db3a8feedf8ee515ecdd369809bcce8082" +checksum = "93634eb5f75a2323b16de4748022ac4297f9e76b6dced2be287a099f41b5e788" dependencies = [ "darling", "proc-macro2", "quote", - "syn", + "syn 2.0.38", ] [[package]] @@ -2385,7 +3022,7 @@ checksum = "74064874e9f6a15f04c1f3cb627902d0e6b410abbf36668afa873c61889f1763" dependencies = [ "proc-macro2", "quote", - "syn", + "syn 1.0.105", ] [[package]] @@ -2399,6 +3036,17 @@ dependencies = [ ] [[package]] +name = "sha1" +version = "0.10.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "f04293dc80c3993519f2d7f6f511707ee7094fe0c6d3406feb330cdb3540eba3" +dependencies = [ + "cfg-if", + "cpufeatures", + "digest", +] + +[[package]] name = "sha2" version = "0.10.6" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -2429,6 +3077,25 @@ dependencies = [ ] [[package]] +name = "signal-hook" +version = "0.3.17" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "8621587d4798caf8eb44879d42e56b9a93ea5dcd315a6487c357130095b62801" +dependencies = [ + "libc", + "signal-hook-registry", +] + +[[package]] +name = "signal-hook-registry" +version = "1.4.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "d8229b473baa5980ac72ef434c4415e70c4b5e71b423043adb4ba059f89c99a1" +dependencies = [ + "libc", +] + +[[package]] name = "siphasher" version = "0.3.10" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -2450,6 +3117,16 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "a507befe795404456341dfab10cef66ead4c041f62b8b11bbb92bffe5d0953e0" [[package]] +name = "socket2" +version = "0.4.10" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "9f7916fc008ca5542385b89a3d3ce689953c143e9304a9bf8beec1de48994c0d" +dependencies = [ + "libc", + "winapi", +] + +[[package]] name = "soup2" version = "0.2.1" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -2493,6 +3170,12 @@ dependencies = [ ] [[package]] +name = "static_assertions" +version = "1.1.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "a2eb9349b6444b326872e140eb1cf5e7c522154d69e7a0ffb0fb81c06b37543f" + +[[package]] name = "string_cache" version = "0.8.4" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -2542,7 +3225,7 @@ dependencies = [ "heck 0.3.3", "proc-macro2", "quote", - "syn", + "syn 1.0.105", ] [[package]] @@ -2557,6 +3240,51 @@ dependencies = [ ] [[package]] +name = "syn" +version = "2.0.38" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "e96b79aaa137db8f61e26363a0c9b47d8b4ec75da28b7d1d614c2303e232408b" +dependencies = [ + "proc-macro2", + "quote", + "unicode-ident", +] + +[[package]] +name = "sys-locale" +version = "0.2.4" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "f8a11bd9c338fdba09f7881ab41551932ad42e405f61d01e8406baea71c07aee" +dependencies = [ + "js-sys", + "libc", + "wasm-bindgen", + "web-sys", + "windows-sys 0.45.0", +] + +[[package]] +name = "system-configuration" +version = "0.5.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "ba3a3adc5c275d719af8cb4272ea1c4a6d668a777f37e115f6d11ddbc1c8e0e7" +dependencies = [ + "bitflags", + "core-foundation", + "system-configuration-sys", +] + +[[package]] +name = "system-configuration-sys" +version = "0.5.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "a75fb188eb626b924683e3b95e3a48e63551fcfb51949de2f06a9d91dbee93c9" +dependencies = [ + "core-foundation-sys", + "libc", +] + +[[package]] name = "system-deps" version = "5.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -2565,7 +3293,7 @@ dependencies = [ "cfg-expr 0.9.1", "heck 0.3.3", "pkg-config", - "toml", + "toml 0.5.9", "version-compare 0.0.11", ] @@ -2578,15 +3306,15 @@ dependencies = [ "cfg-expr 0.11.0", "heck 0.4.0", "pkg-config", - "toml", + "toml 0.5.9", "version-compare 0.1.1", ] [[package]] name = "tao" -version = "0.15.7" +version = "0.16.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a1fa15735311b4816d030ff54da58560b047daca0970e1031aed5502e84231a8" +checksum = "75f5aefd6be4cd3ad3f047442242fd9f57cbfb3e565379f66b5e14749364fa4f" dependencies = [ "bitflags", "cairo-rs", @@ -2600,6 +3328,7 @@ dependencies = [ "gdk", "gdk-pixbuf", "gdk-sys", + "gdkwayland-sys", "gdkx11-sys", "gio", "glib", @@ -2618,19 +3347,30 @@ dependencies = [ "objc", "once_cell", "parking_lot", - "paste", "png", "raw-window-handle", "scopeguard", "serde", + "tao-macros", "unicode-segmentation", - "uuid 1.2.2", + "uuid", "windows 0.39.0", "windows-implement", "x11-dl", ] [[package]] +name = "tao-macros" +version = "0.1.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "ec114582505d158b669b136e6851f85840c109819d77c42bb7c0709f727d18c2" +dependencies = [ + "proc-macro2", + "quote", + "syn 1.0.105", +] + +[[package]] name = "tar" version = "0.4.38" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -2643,13 +3383,13 @@ dependencies = [ [[package]] name = "tauri" -version = "1.2.3" +version = "1.5.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5b48820ee3bb6a5031a83b2b6e11f8630bdc5a2f68cb841ab8ebc7a15a916679" +checksum = "9bfe673cf125ef364d6f56b15e8ce7537d9ca7e4dae1cf6fbbdeed2e024db3d9" dependencies = [ "anyhow", - "attohttpc", - "base64", + "base64 0.21.5", + "bytes", "cocoa", "dirs-next", "embed_plist", @@ -2673,6 +3413,7 @@ dependencies = [ "rand 0.8.5", "raw-window-handle", "regex", + "reqwest", "rfd", "semver 1.0.14", "serde", @@ -2681,6 +3422,7 @@ dependencies = [ "serialize-to-javascript", "shared_child", "state", + "sys-locale", "tar", "tauri-macros", "tauri-runtime", @@ -2691,7 +3433,7 @@ dependencies = [ "time", "tokio", "url", - "uuid 1.2.2", + "uuid", "webkit2gtk", "webview2-com", "windows 0.39.0", @@ -2700,27 +3442,30 @@ dependencies = [ [[package]] name = "tauri-build" -version = "1.2.1" +version = "1.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8807c85d656b2b93927c19fe5a5f1f1f348f96c2de8b90763b3c2d561511f9b4" +checksum = "defbfc551bd38ab997e5f8e458f87396d2559d05ce32095076ad6c30f7fc5f9c" dependencies = [ "anyhow", "cargo_toml", + "dirs-next", "heck 0.4.0", "json-patch", "semver 1.0.14", + "serde", "serde_json", "tauri-utils", - "winres", + "tauri-winres", + "walkdir", ] [[package]] name = "tauri-codegen" -version = "1.2.1" +version = "1.4.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "14388d484b6b1b5dc0f6a7d6cc6433b3b230bec85eaa576adcdf3f9fafa49251" +checksum = "7b3475e55acec0b4a50fb96435f19631fb58cbcd31923e1a213de5c382536bbb" dependencies = [ - "base64", + "base64 0.21.5", "brotli", "ico", "json-patch", @@ -2736,29 +3481,29 @@ dependencies = [ "tauri-utils", "thiserror", "time", - "uuid 1.2.2", + "uuid", "walkdir", ] [[package]] name = "tauri-macros" -version = "1.2.1" +version = "1.4.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "069319e5ecbe653a799b94b0690d9f9bf5d00f7b1d3989aa331c524d4e354075" +checksum = "613740228de92d9196b795ac455091d3a5fbdac2654abb8bb07d010b62ab43af" dependencies = [ "heck 0.4.0", "proc-macro2", "quote", - "syn", + "syn 1.0.105", "tauri-codegen", "tauri-utils", ] [[package]] name = "tauri-runtime" -version = "0.12.1" +version = "0.14.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c507d954d08ac8705d235bc70ec6975b9054fb95ff7823af72dbb04186596f3b" +checksum = "07f8e9e53e00e9f41212c115749e87d5cd2a9eebccafca77a19722eeecd56d43" dependencies = [ "gtk", "http", @@ -2769,16 +3514,17 @@ dependencies = [ "serde_json", "tauri-utils", "thiserror", - "uuid 1.2.2", + "url", + "uuid", "webview2-com", "windows 0.39.0", ] [[package]] name = "tauri-runtime-wry" -version = "0.12.2" +version = "0.14.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "36b1c5764a41a13176a4599b5b7bd0881bea7d94dfe45e1e755f789b98317e30" +checksum = "8141d72b6b65f2008911e9ef5b98a68d1e3413b7a1464e8f85eb3673bb19a895" dependencies = [ "cocoa", "gtk", @@ -2787,7 +3533,7 @@ dependencies = [ "raw-window-handle", "tauri-runtime", "tauri-utils", - "uuid 1.2.2", + "uuid", "webkit2gtk", "webview2-com", "windows 0.39.0", @@ -2796,18 +3542,20 @@ dependencies = [ [[package]] name = "tauri-utils" -version = "1.2.1" +version = "1.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5abbc109a6eb45127956ffcc26ef0e875d160150ac16cfa45d26a6b2871686f1" +checksum = "34d55e185904a84a419308d523c2c6891d5e2dbcee740c4997eb42e75a7b0f46" dependencies = [ "brotli", "ctor", + "dunce", "glob", "heck 0.4.0", - "html5ever", + "html5ever 0.26.0", "infer", "json-patch", - "kuchiki", + "kuchikiki", + "log", "memchr", "phf 0.10.1", "proc-macro2", @@ -2823,6 +3571,16 @@ dependencies = [ ] [[package]] +name = "tauri-winres" +version = "0.1.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "5993dc129e544393574288923d1ec447c857f3f644187f4fbf7d9a875fbfc4fb" +dependencies = [ + "embed-resource", + "toml 0.7.8", +] + +[[package]] name = "tauri-winrt-notification" version = "0.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -2840,7 +3598,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "5cdb1ef4eaeeaddc8fbd371e5017057064af0911902ef36b39801f67cc6d79e4" dependencies = [ "cfg-if", - "fastrand", + "fastrand 1.8.0", "libc", "redox_syscall", "remove_dir_all", @@ -2866,22 +3624,22 @@ checksum = "8eaa81235c7058867fa8c0e7314f33dcce9c215f535d1913822a2b3f5e289f3c" [[package]] name = "thiserror" -version = "1.0.37" +version = "1.0.50" source = 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= "bbae76ab933c85776efabc971569dd6119c580d8f5d448769dec1764bf796ef2" +dependencies = [ + "native-tls", + "tokio", +] + +[[package]] +name = "tokio-util" +version = "0.7.8" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "806fe8c2c87eccc8b3267cbae29ed3ab2d0bd37fca70ab622e46aaa9375ddb7d" +dependencies = [ + "bytes", + "futures-core", + "futures-sink", + "pin-project-lite", + "tokio", + "tracing", +] + +[[package]] name = "toml" version = "0.5.9" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -2959,6 +3744,71 @@ dependencies = [ ] [[package]] +name = "toml" +version = "0.7.8" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "dd79e69d3b627db300ff956027cc6c3798cef26d22526befdfcd12feeb6d2257" +dependencies = [ + "serde", + "serde_spanned", + "toml_datetime", + "toml_edit 0.19.15", +] + +[[package]] +name = "toml" +version = "0.8.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "3efaf127c78d5339cc547cce4e4d973bd5e4f56e949a06d091c082ebeef2f800" +dependencies = [ + "serde", + "serde_spanned", + "toml_datetime", + "toml_edit 0.20.5", +] + +[[package]] +name = "toml_datetime" +version = "0.6.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "3550f4e9685620ac18a50ed434eb3aec30db8ba93b0287467bca5826ea25baf1" +dependencies = [ + "serde", +] + +[[package]] +name = "toml_edit" +version = "0.19.15" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "1b5bb770da30e5cbfde35a2d7b9b8a2c4b8ef89548a7a6aeab5c9a576e3e7421" +dependencies = [ + "indexmap 2.0.2", + "serde", + "serde_spanned", + "toml_datetime", + "winnow", +] + +[[package]] +name = "toml_edit" +version = "0.20.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "782bf6c2ddf761c1e7855405e8975472acf76f7f36d0d4328bd3b7a2fae12a85" +dependencies = [ + "indexmap 2.0.2", + "serde", + "serde_spanned", + "toml_datetime", + "winnow", +] + +[[package]] +name = "tower-service" +version = "0.3.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "b6bc1c9ce2b5135ac7f93c72918fc37feb872bdc6a5533a8b85eb4b86bfdae52" + +[[package]] name = "tracing" version = "0.1.37" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -2978,7 +3828,7 @@ checksum = "4017f8f45139870ca7e672686113917c71c7a6e02d4924eda67186083c03081a" dependencies = [ "proc-macro2", "quote", - "syn", + "syn 1.0.105", ] [[package]] @@ -3022,14 +3872,20 @@ dependencies = [ [[package]] name = "treediff" -version = "3.0.2" +version = "4.0.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "761e8d5ad7ce14bb82b7e61ccc0ca961005a275a060b9644a2431aa11553c2ff" +checksum = "52984d277bdf2a751072b5df30ec0377febdb02f7696d64c2d7d54630bac4303" dependencies = [ "serde_json", ] [[package]] +name = "try-lock" +version = "0.2.4" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "3528ecfd12c466c6f163363caf2d02a71161dd5e1cc6ae7b34207ea2d42d81ed" + +[[package]] name = "typenum" version = "1.16.0" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -3042,6 +3898,16 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "9e79c4d996edb816c91e4308506774452e55e95c3c9de07b6729e17e15a5ef81" [[package]] +name = "uds_windows" +version = "1.0.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "ce65604324d3cce9b966701489fbd0cf318cb1f7bd9dd07ac9a4ee6fb791930d" +dependencies = [ + "tempfile", + "winapi", +] + +[[package]] name = "unicode-bidi" version = "0.3.8" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -3088,12 +3954,6 @@ checksum = "09cc8ee72d2a9becf2f2febe0205bbed8fc6615b7cb429ad062dc7b7ddd036a9" [[package]] name = "uuid" -version = "0.8.2" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "bc5cf98d8186244414c848017f0e2676b3fcb46807f6668a97dfe67359a3c4b7" - -[[package]] -name = "uuid" version = "1.2.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "422ee0de9031b5b948b97a8fc04e3aa35230001a722ddd27943e0be31564ce4c" @@ -3132,6 +3992,32 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "49874b5167b65d7193b8aba1567f5c7d93d001cafc34600cee003eda787e483f" [[package]] +name = "vswhom" +version = "0.1.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "be979b7f07507105799e854203b470ff7c78a1639e330a58f183b5fea574608b" +dependencies = [ + "libc", + "vswhom-sys", +] + +[[package]] +name = "vswhom-sys" +version = "0.1.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "d3b17ae1f6c8a2b28506cd96d412eebf83b4a0ff2cbefeeb952f2f9dfa44ba18" +dependencies = [ + "cc", + "libc", +] + +[[package]] +name = "waker-fn" +version = "1.1.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "f3c4517f54858c779bbcbf228f4fca63d121bf85fbecb2dc578cdf4a39395690" + +[[package]] name = "walkdir" version = "2.3.2" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -3143,6 +4029,15 @@ dependencies = [ ] [[package]] +name = "want" +version = "0.3.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "bfa7760aed19e106de2c7c0b581b509f2f25d3dacaf737cb82ac61bc6d760b0e" +dependencies = [ + "try-lock", +] + +[[package]] name = "wasi" version = "0.9.0+wasi-snapshot-preview1" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -3175,7 +4070,7 @@ dependencies = [ "once_cell", "proc-macro2", "quote", - "syn", + "syn 1.0.105", "wasm-bindgen-shared", ] @@ -3209,7 +4104,7 @@ checksum = "07bc0c051dc5f23e307b13285f9d75df86bfdf816c5721e573dec1f9b8aa193c" dependencies = [ "proc-macro2", "quote", - "syn", + "syn 1.0.105", "wasm-bindgen-backend", "wasm-bindgen-shared", ] @@ -3221,6 +4116,19 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "1c38c045535d93ec4f0b4defec448e4291638ee608530863b1e2ba115d4fff7f" [[package]] +name = "wasm-streams" +version = "0.3.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "b4609d447824375f43e1ffbc051b50ad8f4b3ae8219680c94452ea05eb240ac7" +dependencies = [ + "futures-util", + "js-sys", + "wasm-bindgen", + "wasm-bindgen-futures", + "web-sys", +] + +[[package]] name = "web-sys" version = "0.3.60" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -3297,7 +4205,7 @@ checksum = "eaebe196c01691db62e9e4ca52c5ef1e4fd837dcae27dae3ada599b5a8fd05ac" dependencies = [ "proc-macro2", "quote", - "syn", + "syn 1.0.105", ] [[package]] @@ -3384,12 +4292,21 @@ dependencies = [ ] [[package]] +name = "windows-core" +version = "0.51.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "f1f8cf84f35d2db49a46868f947758c7a1138116f7fac3bc844f43ade1292e64" +dependencies = [ + "windows-targets 0.48.5", +] + +[[package]] name = "windows-implement" version = "0.39.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "ba01f98f509cb5dc05f4e5fc95e535f78260f15fea8fe1a8abdd08f774f1cee7" dependencies = [ - "syn", + "syn 1.0.105", "windows-tokens", ] @@ -3418,13 +4335,61 @@ version = "0.42.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "5a3e1820f08b8513f676f7ab6c1f99ff312fb97b553d30ff4dd86f9f15728aa7" dependencies = [ - "windows_aarch64_gnullvm", - "windows_aarch64_msvc 0.42.0", - "windows_i686_gnu 0.42.0", - "windows_i686_msvc 0.42.0", - "windows_x86_64_gnu 0.42.0", - "windows_x86_64_gnullvm", - "windows_x86_64_msvc 0.42.0", + "windows_aarch64_gnullvm 0.42.2", + "windows_aarch64_msvc 0.42.2", + "windows_i686_gnu 0.42.2", + "windows_i686_msvc 0.42.2", + "windows_x86_64_gnu 0.42.2", + "windows_x86_64_gnullvm 0.42.2", + "windows_x86_64_msvc 0.42.2", +] + +[[package]] +name = "windows-sys" +version = "0.45.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "75283be5efb2831d37ea142365f009c02ec203cd29a3ebecbc093d52315b66d0" +dependencies = [ + "windows-targets 0.42.2", +] + +[[package]] +name = "windows-sys" +version = "0.48.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "677d2418bec65e3338edb076e806bc1ec15693c5d0104683f2efe857f61056a9" +dependencies = [ + "windows-targets 0.48.5", +] + +[[package]] +name = "windows-targets" +version = "0.42.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "8e5180c00cd44c9b1c88adb3693291f1cd93605ded80c250a75d472756b4d071" +dependencies = [ + "windows_aarch64_gnullvm 0.42.2", + "windows_aarch64_msvc 0.42.2", + "windows_i686_gnu 0.42.2", + "windows_i686_msvc 0.42.2", + "windows_x86_64_gnu 0.42.2", + "windows_x86_64_gnullvm 0.42.2", + "windows_x86_64_msvc 0.42.2", +] + +[[package]] +name = "windows-targets" +version = "0.48.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "9a2fa6e2155d7247be68c096456083145c183cbbbc2764150dda45a87197940c" +dependencies = [ + "windows_aarch64_gnullvm 0.48.5", + "windows_aarch64_msvc 0.48.5", + "windows_i686_gnu 0.48.5", + "windows_i686_msvc 0.48.5", + "windows_x86_64_gnu 0.48.5", + "windows_x86_64_gnullvm 0.48.5", + "windows_x86_64_msvc 0.48.5", ] [[package]] @@ -3435,9 +4400,15 @@ checksum = "f838de2fe15fe6bac988e74b798f26499a8b21a9d97edec321e79b28d1d7f597" [[package]] name = "windows_aarch64_gnullvm" -version = "0.42.0" +version = "0.42.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "597a5118570b68bc08d8d59125332c54f1ba9d9adeedeef5b99b02ba2b0698f8" + +[[package]] +name = "windows_aarch64_gnullvm" +version = "0.48.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "41d2aa71f6f0cbe00ae5167d90ef3cfe66527d6f613ca78ac8024c3ccab9a19e" +checksum = "2b38e32f0abccf9987a4e3079dfb67dcd799fb61361e53e2882c3cbaf0d905d8" [[package]] name = "windows_aarch64_msvc" @@ -3459,9 +4430,15 @@ checksum = "ec7711666096bd4096ffa835238905bb33fb87267910e154b18b44eaabb340f2" [[package]] name = "windows_aarch64_msvc" -version = "0.42.0" +version = "0.42.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "dd0f252f5a35cac83d6311b2e795981f5ee6e67eb1f9a7f64eb4500fbc4dcdb4" +checksum = "e08e8864a60f06ef0d0ff4ba04124db8b0fb3be5776a5cd47641e942e58c4d43" + +[[package]] +name = "windows_aarch64_msvc" +version = "0.48.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "dc35310971f3b2dbbf3f0690a219f40e2d9afcf64f9ab7cc1be722937c26b4bc" [[package]] name = "windows_i686_gnu" @@ -3483,9 +4460,15 @@ checksum = "763fc57100a5f7042e3057e7e8d9bdd7860d330070251a73d003563a3bb49e1b" [[package]] name = "windows_i686_gnu" -version = "0.42.0" +version = "0.42.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fbeae19f6716841636c28d695375df17562ca208b2b7d0dc47635a50ae6c5de7" +checksum = "c61d927d8da41da96a81f029489353e68739737d3beca43145c8afec9a31a84f" + +[[package]] +name = "windows_i686_gnu" +version = "0.48.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "a75915e7def60c94dcef72200b9a8e58e5091744960da64ec734a6c6e9b3743e" [[package]] name = "windows_i686_msvc" @@ -3507,9 +4490,15 @@ checksum = "7bc7cbfe58828921e10a9f446fcaaf649204dcfe6c1ddd712c5eebae6bda1106" [[package]] name = "windows_i686_msvc" -version = "0.42.0" +version = "0.42.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "84c12f65daa39dd2babe6e442988fc329d6243fdce47d7d2d155b8d874862246" +checksum = "44d840b6ec649f480a41c8d80f9c65108b92d89345dd94027bfe06ac444d1060" + +[[package]] +name = "windows_i686_msvc" +version = "0.48.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "8f55c233f70c4b27f66c523580f78f1004e8b5a8b659e05a4eb49d4166cca406" [[package]] name = "windows_x86_64_gnu" @@ -3531,15 +4520,27 @@ checksum = "6868c165637d653ae1e8dc4d82c25d4f97dd6605eaa8d784b5c6e0ab2a252b65" [[package]] name = "windows_x86_64_gnu" -version = "0.42.0" +version = "0.42.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "bf7b1b21b5362cbc318f686150e5bcea75ecedc74dd157d874d754a2ca44b0ed" +checksum = "8de912b8b8feb55c064867cf047dda097f92d51efad5b491dfb98f6bbb70cb36" + +[[package]] +name = "windows_x86_64_gnu" +version = "0.48.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "53d40abd2583d23e4718fddf1ebec84dbff8381c07cae67ff7768bbf19c6718e" [[package]] name = "windows_x86_64_gnullvm" -version = "0.42.0" +version = "0.42.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "26d41b46a36d453748aedef1486d5c7a85db22e56aff34643984ea85514e94a3" + +[[package]] +name = "windows_x86_64_gnullvm" +version = "0.48.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "09d525d2ba30eeb3297665bd434a54297e4170c7f1a44cad4ef58095b4cd2028" +checksum = "0b7b52767868a23d5bab768e390dc5f5c55825b6d30b86c844ff2dc7414044cc" [[package]] name = "windows_x86_64_msvc" @@ -3561,26 +4562,52 @@ checksum = "5e4d40883ae9cae962787ca76ba76390ffa29214667a111db9e0a1ad8377e809" [[package]] name = "windows_x86_64_msvc" -version = "0.42.0" +version = "0.42.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f40009d85759725a34da6d89a94e63d7bdc50a862acf0dbc7c8e488f1edcb6f5" +checksum = "9aec5da331524158c6d1a4ac0ab1541149c0b9505fde06423b02f5ef0106b9f0" [[package]] -name = "winres" -version = "0.1.12" +name = "windows_x86_64_msvc" +version = "0.48.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "ed94fce61571a4006852b7389a063ab983c02eb1bb37b47f8272ce92d06d9538" + +[[package]] +name = "winnow" +version = "0.5.17" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b68db261ef59e9e52806f688020631e987592bd83619edccda9c47d42cde4f6c" +checksum = "a3b801d0e0a6726477cc207f60162da452f3a95adb368399bef20a946e06f65c" dependencies = [ - "toml", + "memchr", +] + +[[package]] +name = "winreg" +version = "0.50.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "524e57b2c537c0f9b1e69f1965311ec12182b4122e45035b1508cd24d2adadb1" +dependencies = [ + "cfg-if", + "windows-sys 0.48.0", +] + +[[package]] +name = "winreg" +version = "0.51.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "937f3df7948156640f46aacef17a70db0de5917bda9c92b0f751f3a955b588fc" +dependencies = [ + "cfg-if", + "windows-sys 0.48.0", ] [[package]] name = "wry" -version = "0.23.3" +version = "0.24.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9ae300cf3ac1abd15037d0956d25d084077c8d67a075d7ef6971426a04f6fdd1" +checksum = "88ef04bdad49eba2e01f06e53688c8413bd6a87b0bc14b72284465cf96e3578e" dependencies = [ - "base64", + "base64 0.13.1", "block", "cocoa", "core-graphics", @@ -3590,7 +4617,7 @@ dependencies = [ "gio", "glib", "gtk", - "html5ever", + "html5ever 0.25.2", "http", "kuchiki", "libc", @@ -3643,12 +4670,88 @@ dependencies = [ ] [[package]] +name = "xdg-home" +version = "1.0.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "2769203cd13a0c6015d515be729c526d041e9cf2c0cc478d57faee85f40c6dcd" +dependencies = [ + "nix", + "winapi", +] + +[[package]] name = "xml-rs" version = "0.8.4" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "d2d7d3948613f75c98fd9328cfdcc45acc4d360655289d0a7d4ec931392200a3" [[package]] +name = "zbus" +version = "3.14.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "31de390a2d872e4cd04edd71b425e29853f786dc99317ed72d73d6fcf5ebb948" +dependencies = [ + "async-broadcast", + "async-executor", + "async-fs", + "async-io", + "async-lock", + "async-process", + "async-recursion", + "async-task", + "async-trait", + "blocking", + "byteorder", + "derivative", + "enumflags2", + "event-listener", + "futures-core", + "futures-sink", + "futures-util", + "hex", + "nix", + "once_cell", + "ordered-stream", + "rand 0.8.5", + "serde", + "serde_repr", + "sha1", + "static_assertions", + "tracing", + "uds_windows", + "winapi", + "xdg-home", + "zbus_macros", + "zbus_names", + "zvariant", +] + +[[package]] +name = "zbus_macros" +version = "3.14.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "41d1794a946878c0e807f55a397187c11fc7a038ba5d868e7db4f3bd7760bc9d" +dependencies = [ + "proc-macro-crate", + "proc-macro2", + "quote", + "regex", + "syn 1.0.105", + "zvariant_utils", +] + +[[package]] +name = "zbus_names" +version = "2.6.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "fb80bb776dbda6e23d705cf0123c3b95df99c4ebeaec6c2599d4a5419902b4a9" +dependencies = [ + "serde", + "static_assertions", + "zvariant", +] + +[[package]] name = "zip" version = "0.6.3" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -3658,3 +4761,41 @@ dependencies = [ "crc32fast", "crossbeam-utils", ] + +[[package]] +name = "zvariant" +version = "3.15.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "44b291bee0d960c53170780af148dca5fa260a63cdd24f1962fa82e03e53338c" +dependencies = [ + "byteorder", + "enumflags2", + "libc", + "serde", + "static_assertions", + "zvariant_derive", +] + +[[package]] +name = "zvariant_derive" +version = "3.15.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "934d7a7dfc310d6ee06c87ffe88ef4eca7d3e37bb251dece2ef93da8f17d8ecd" +dependencies = [ + "proc-macro-crate", + "proc-macro2", + "quote", + "syn 1.0.105", + "zvariant_utils", +] + +[[package]] +name = "zvariant_utils" +version = "1.0.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "7234f0d811589db492d16893e3f21e8e2fd282e6d01b0cddee310322062cc200" +dependencies = [ + "proc-macro2", + "quote", + "syn 1.0.105", +] diff --git a/pkgs/applications/networking/instant-messengers/cinny-desktop/default.nix b/pkgs/applications/networking/instant-messengers/cinny-desktop/default.nix index 95956b3f25605..23ad9cc02961b 100644 --- a/pkgs/applications/networking/instant-messengers/cinny-desktop/default.nix +++ b/pkgs/applications/networking/instant-messengers/cinny-desktop/default.nix @@ -21,13 +21,13 @@ rustPlatform.buildRustPackage rec { pname = "cinny-desktop"; # We have to be using the same version as cinny-web or this isn't going to work. - version = "3.1.0"; + version = "3.2.0"; src = fetchFromGitHub { owner = "cinnyapp"; repo = "cinny-desktop"; rev = "v${version}"; - hash = "sha256-v5D0/EHVQ2xo7TGo+jZoRDBVFczkaZu2ka6QpwV4dpw="; + hash = "sha256-uHGqvulH7/9JpUjkpcbCh1pPvX4/ndVIKcBXzWmDo+s="; }; sourceRoot = "${src.name}/src-tauri"; diff --git a/pkgs/applications/networking/instant-messengers/cinny/default.nix b/pkgs/applications/networking/instant-messengers/cinny/default.nix index 87e3d17314014..f3ae1665fe3d9 100644 --- a/pkgs/applications/networking/instant-messengers/cinny/default.nix +++ b/pkgs/applications/networking/instant-messengers/cinny/default.nix @@ -18,16 +18,16 @@ let in buildNpmPackage rec { pname = "cinny"; - version = "3.1.0"; + version = "3.2.0"; src = fetchFromGitHub { owner = "cinnyapp"; repo = "cinny"; rev = "v${version}"; - hash = "sha256-GcygxK9NcGlv4rwxQCJqi0BhNlOTFxjGB8mbfTaBMOk="; + hash = "sha256-wAa7y2mXPkXAfirRSFqwZYIJK0CKDzZG8ULzXzr4zZ4="; }; - npmDepsHash = "sha256-4R+To2LhcnEM9x1noo6MhCckyBKgPWiAi7zgDqAmaN0="; + npmDepsHash = "sha256-dVdylvclUIHvF5syVumdxkXR4bG1FA4LOYg3GmnNzXE="; # Fix error: no member named 'aligned_alloc' in the global namespace env.NIX_CFLAGS_COMPILE = lib.optionalString ( diff --git a/pkgs/applications/networking/instant-messengers/deltachat-cursed/default.nix b/pkgs/applications/networking/instant-messengers/deltachat-cursed/default.nix index 8e496c6c11012..a8299361d928b 100644 --- a/pkgs/applications/networking/instant-messengers/deltachat-cursed/default.nix +++ b/pkgs/applications/networking/instant-messengers/deltachat-cursed/default.nix @@ -7,7 +7,7 @@ python3.pkgs.buildPythonApplication rec { pname = "deltachat-cursed"; - version = "0.8.0"; + version = "0.9.0"; pyproject = true; @@ -15,17 +15,17 @@ python3.pkgs.buildPythonApplication rec { owner = "adbenitez"; repo = "deltachat-cursed"; rev = "v${version}"; - hash = "sha256-1QNhNPa6ZKn0lGQXs/cmfdSFHscwlYwFC/2DpnMoHvY="; + hash = "sha256-z4JKe5soR4FdIn8hugxtnxQr/9V8m8a7QRzE1liIexc="; }; - nativeBuildInputs = with python3.pythonOnBuildForHost.pkgs; [ + build-system = with python3.pythonOnBuildForHost.pkgs; [ setuptools setuptools-scm ]; - propagatedBuildInputs = with python3.pkgs; [ + dependencies = with python3.pkgs; [ appdirs - deltachat + deltachat2 emoji notify-py setuptools # for pkg_resources diff --git a/pkgs/applications/networking/instant-messengers/deltachat-desktop/default.nix b/pkgs/applications/networking/instant-messengers/deltachat-desktop/default.nix index d53b122068a91..43a18d775f9ee 100644 --- a/pkgs/applications/networking/instant-messengers/deltachat-desktop/default.nix +++ b/pkgs/applications/networking/instant-messengers/deltachat-desktop/default.nix @@ -1,11 +1,12 @@ { lib , buildNpmPackage , copyDesktopItems -, electron_28 +, electron , buildGoModule , esbuild , fetchFromGitHub , jq +, deltachat-rpc-server , libdeltachat , makeDesktopItem , makeWrapper @@ -36,16 +37,16 @@ let in buildNpmPackage rec { pname = "deltachat-desktop"; - version = "1.44.1"; + version = "1.46.1"; src = fetchFromGitHub { owner = "deltachat"; repo = "deltachat-desktop"; rev = "v${version}"; - hash = "sha256-fL+9oPQ5dAgvQREZ7A+hKo2MnZKeVvadQDvDPsDNbnQ="; + hash = "sha256-90/Wmh0h75i3kvqj3Wo+A3KlKW8LLDWfPza2gDrDY6E="; }; - npmDepsHash = "sha256-rUxJLDsAfp+brecTThYTdHIVIfVkKwZ/W5sHV0hHHIk="; + npmDepsHash = "sha256-UzWxMd+DYH5A8Zo1rzi8oIsoKbmzsVbGpr3uWtc02rY="; postPatch = '' test \ @@ -64,6 +65,7 @@ buildNpmPackage rec { ]; buildInputs = [ + deltachat-rpc-server libdeltachat ] ++ lib.optionals stdenv.isDarwin [ CoreServices @@ -77,7 +79,8 @@ buildNpmPackage rec { }; preBuild = '' - rm -r node_modules/deltachat-node/node/prebuilds + rm node_modules/@deltachat/stdio-rpc-server-*/deltachat-rpc-server + ln -s ${lib.getExe deltachat-rpc-server} node_modules/@deltachat/stdio-rpc-server-linux-* ''; npmBuildScript = "build4production"; @@ -93,6 +96,9 @@ buildNpmPackage rec { awk '!/^#/ && NF' build/packageignore_list \ | xargs -I {} sh -c "rm -rf $out/lib/node_modules/deltachat-desktop/{}" || true + # required for electron to import index.js as a module + cp package.json $out/lib/node_modules/deltachat-desktop + install -D build/icon.png \ $out/share/icons/hicolor/scalable/apps/deltachat.png @@ -103,7 +109,7 @@ buildNpmPackage rec { $out/lib/node_modules/deltachat-desktop/html-dist/fonts done - makeWrapper ${lib.getExe electron_28} $out/bin/deltachat \ + makeWrapper ${lib.getExe electron} $out/bin/deltachat \ --set LD_PRELOAD ${sqlcipher}/lib/libsqlcipher${stdenv.hostPlatform.extensions.sharedLibrary} \ --add-flags $out/lib/node_modules/deltachat-desktop diff --git a/pkgs/applications/networking/instant-messengers/discord/default.nix b/pkgs/applications/networking/instant-messengers/discord/default.nix index ec8bcb5a8d8eb..7c0d9c7b1e5a2 100644 --- a/pkgs/applications/networking/instant-messengers/discord/default.nix +++ b/pkgs/applications/networking/instant-messengers/discord/default.nix @@ -4,7 +4,7 @@ let if stdenv.isLinux then { stable = "0.0.56"; ptb = "0.0.90"; - canary = "0.0.422"; + canary = "0.0.431"; development = "0.0.19"; } else { stable = "0.0.307"; @@ -25,7 +25,7 @@ let }; canary = fetchurl { url = "https://dl-canary.discordapp.net/apps/linux/${version}/discord-canary-${version}.tar.gz"; - hash = "sha256-MTC079WTN0Vw57aLro1WkHRL09IKYjnUsfBAMiiHjI0="; + hash = "sha256-59Sv3U3osfk+QoXgorpqK7CU0nJBdpFOMkoGRgHN3v8="; }; development = fetchurl { url = "https://dl-development.discordapp.net/apps/linux/${version}/discord-development-${version}.tar.gz"; diff --git a/pkgs/applications/networking/instant-messengers/rambox/default.nix b/pkgs/applications/networking/instant-messengers/rambox/default.nix index 3ecda10bb973e..9310154d04448 100644 --- a/pkgs/applications/networking/instant-messengers/rambox/default.nix +++ b/pkgs/applications/networking/instant-messengers/rambox/default.nix @@ -2,11 +2,11 @@ let pname = "rambox"; - version = "2.3.3"; + version = "2.3.4"; src = fetchurl { url = "https://github.com/ramboxapp/download/releases/download/v${version}/Rambox-${version}-linux-x64.AppImage"; - hash = "sha256-Z6ux/liDpE0Fb4h0eAZC7F/Tt3eKlXQPBQVCd7Je9TI="; + hash = "sha256-YaLvqd0yr0wlsvjtoN/9GXoZIpjH26DInhWC0Vg62Rs="; }; desktopItem = (makeDesktopItem { diff --git a/pkgs/applications/networking/instant-messengers/signal-desktop/signal-desktop-beta.nix b/pkgs/applications/networking/instant-messengers/signal-desktop/signal-desktop-beta.nix index f982124cb8436..8621aaf1b3eab 100644 --- a/pkgs/applications/networking/instant-messengers/signal-desktop/signal-desktop-beta.nix +++ b/pkgs/applications/networking/instant-messengers/signal-desktop/signal-desktop-beta.nix @@ -2,7 +2,7 @@ callPackage ./generic.nix { } rec { pname = "signal-desktop-beta"; dir = "Signal Beta"; - version = "7.13.0-beta.1"; + version = "7.14.0-beta.1"; url = "https://updates.signal.org/desktop/apt/pool/s/signal-desktop-beta/signal-desktop-beta_${version}_amd64.deb"; - hash = "sha256-DvYRvIA+rg4RKXbqWjWj7oFnfLboEiMeP7HgGYkRBDM="; + hash = "sha256-SC7CCqylPkc/qmlSYlXJcVWGi1+hvRQ9qBGR6wqo6sk="; } diff --git a/pkgs/applications/networking/instant-messengers/signal-desktop/signal-desktop.nix b/pkgs/applications/networking/instant-messengers/signal-desktop/signal-desktop.nix index 4e1797127b241..c4f59cd3dd557 100644 --- a/pkgs/applications/networking/instant-messengers/signal-desktop/signal-desktop.nix +++ b/pkgs/applications/networking/instant-messengers/signal-desktop/signal-desktop.nix @@ -2,7 +2,7 @@ callPackage ./generic.nix { } rec { pname = "signal-desktop"; dir = "Signal"; - version = "7.11.1"; + version = "7.13.0"; url = "https://updates.signal.org/desktop/apt/pool/s/signal-desktop/signal-desktop_${version}_amd64.deb"; - hash = "sha256-ROJ2aQY0NPZD2GcjdQ1OxbeXKC+60n791Nxs93CyJ/Y="; + hash = "sha256-lwo5O8UAjjMuaeM8J804oN+y72uYZBL+eP/NwpnD4H0="; } diff --git a/pkgs/applications/networking/instant-messengers/signalbackup-tools/default.nix b/pkgs/applications/networking/instant-messengers/signalbackup-tools/default.nix index 00f7fdcaaa47f..ef0a62ac9ed9d 100644 --- a/pkgs/applications/networking/instant-messengers/signalbackup-tools/default.nix +++ b/pkgs/applications/networking/instant-messengers/signalbackup-tools/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "signalbackup-tools"; - version = "20240610"; + version = "20240615-1"; src = fetchFromGitHub { owner = "bepaald"; repo = pname; rev = version; - hash = "sha256-txtOCw7fakQavzpTJrVbelZdEw2mYNe9lb8p1zH6dyw="; + hash = "sha256-70lHZXGdPxT2d15oZW/hKrPS1qfpxH8O5jnyGy7CVz0="; }; postPatch = '' diff --git a/pkgs/applications/networking/instant-messengers/threema-desktop/default.nix b/pkgs/applications/networking/instant-messengers/threema-desktop/default.nix index 34bf49304cb65..2f71df5cef5ac 100644 --- a/pkgs/applications/networking/instant-messengers/threema-desktop/default.nix +++ b/pkgs/applications/networking/instant-messengers/threema-desktop/default.nix @@ -122,7 +122,7 @@ buildNpmPackage rec { homepage = "https://threema.ch"; license = licenses.agpl3Only; mainProgram = "threema"; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; platforms = [ "x86_64-linux" ]; }; } diff --git a/pkgs/applications/networking/instant-messengers/twitch-tui/default.nix b/pkgs/applications/networking/instant-messengers/twitch-tui/default.nix index f4eef4684bebe..f6145678d38f1 100644 --- a/pkgs/applications/networking/instant-messengers/twitch-tui/default.nix +++ b/pkgs/applications/networking/instant-messengers/twitch-tui/default.nix @@ -11,16 +11,16 @@ rustPlatform.buildRustPackage rec { pname = "twitch-tui"; - version = "2.6.11"; + version = "2.6.12"; src = fetchFromGitHub { owner = "Xithrius"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-3Ibf9UULQ0NQ6+oVvLVxUsSSaQ4ilxLehBPZhkrzILQ="; + hash = "sha256-mEpeuopMzZhWOAikEP7Er8xcgNkGbCTkJJYrQr7GrBQ="; }; - cargoHash = "sha256-GK9P+IytkfhfogvPLuYF9+ngs2vr6Quv+v+Rai2cgx8="; + cargoHash = "sha256-U9L4SrYTAUcQ9/2f8tD7jxByVQS9P6OXpra6QvbhNNg="; nativeBuildInputs = [ pkg-config diff --git a/pkgs/applications/networking/instant-messengers/wire-desktop/default.nix b/pkgs/applications/networking/instant-messengers/wire-desktop/default.nix index a9f29029b0694..8dda89f776b49 100644 --- a/pkgs/applications/networking/instant-messengers/wire-desktop/default.nix +++ b/pkgs/applications/networking/instant-messengers/wire-desktop/default.nix @@ -60,7 +60,6 @@ let license = licenses.gpl3Plus; maintainers = with maintainers; [ arianvp - kiwi toonn ]; platforms = platforms.darwin ++ [ diff --git a/pkgs/applications/networking/mailreaders/tutanota-desktop/default.nix b/pkgs/applications/networking/mailreaders/tutanota-desktop/default.nix index 78aa173867692..3e09dbc9b8786 100644 --- a/pkgs/applications/networking/mailreaders/tutanota-desktop/default.nix +++ b/pkgs/applications/networking/mailreaders/tutanota-desktop/default.nix @@ -30,7 +30,7 @@ appimageTools.wrapType2 rec { changelog = "https://github.com/tutao/tutanota/releases/tag/tutanota-desktop-release-${version}"; license = licenses.gpl3Only; sourceProvenance = with sourceTypes; [ binaryNativeCode ]; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; mainProgram = "tutanota-desktop"; platforms = [ "x86_64-linux" ]; }; diff --git a/pkgs/applications/networking/newsreaders/liferea/default.nix b/pkgs/applications/networking/newsreaders/liferea/default.nix index 7bed268a477cc..7e35c4b22fb5e 100644 --- a/pkgs/applications/networking/newsreaders/liferea/default.nix +++ b/pkgs/applications/networking/newsreaders/liferea/default.nix @@ -24,11 +24,11 @@ stdenv.mkDerivation rec { pname = "liferea"; - version = "1.15.6"; + version = "1.15.7"; src = fetchurl { url = "https://github.com/lwindolf/${pname}/releases/download/v${version}/${pname}-${version}.tar.bz2"; - hash = "sha256-4P/0fwHofsRjZcLuFdkUKxWIp/9P5yXA2ED/zqTGd94="; + hash = "sha256-vv6hrvfD1T+eH/Bi1ID0yoxB4747Q+nMvklT49uaX38="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/networking/newsreaders/raven-reader/default.nix b/pkgs/applications/networking/newsreaders/raven-reader/default.nix index 811a0d747fa76..275ef729016f4 100644 --- a/pkgs/applications/networking/newsreaders/raven-reader/default.nix +++ b/pkgs/applications/networking/newsreaders/raven-reader/default.nix @@ -31,7 +31,7 @@ appimageTools.wrapType2 { mainProgram = "raven-reader"; homepage = "https://ravenreader.app/"; license = licenses.mit; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; platforms = [ "x86_64-linux" ]; }; } diff --git a/pkgs/applications/networking/protonvpn-cli/default.nix b/pkgs/applications/networking/protonvpn-cli/default.nix index e480ab5f67b1c..7a79c986ca300 100644 --- a/pkgs/applications/networking/protonvpn-cli/default.nix +++ b/pkgs/applications/networking/protonvpn-cli/default.nix @@ -33,7 +33,7 @@ buildPythonApplication rec { meta = with lib; { description = "Linux command-line client for ProtonVPN"; homepage = "https://github.com/protonvpn/linux-cli"; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; license = licenses.gpl3Plus; platforms = platforms.linux; mainProgram = "protonvpn-cli"; diff --git a/pkgs/applications/networking/protonvpn-gui/default.nix b/pkgs/applications/networking/protonvpn-gui/default.nix index 19081bd138631..38b196cb6c3d2 100644 --- a/pkgs/applications/networking/protonvpn-gui/default.nix +++ b/pkgs/applications/networking/protonvpn-gui/default.nix @@ -98,6 +98,6 @@ buildPythonApplication rec { license = licenses.gpl3Plus; platforms = platforms.linux; mainProgram = "protonvpn-app"; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; }; } diff --git a/pkgs/applications/networking/protonvpn-gui/legacy.nix b/pkgs/applications/networking/protonvpn-gui/legacy.nix index 32828b5590f67..a749b2875affb 100644 --- a/pkgs/applications/networking/protonvpn-gui/legacy.nix +++ b/pkgs/applications/networking/protonvpn-gui/legacy.nix @@ -71,7 +71,7 @@ buildPythonApplication rec { meta = with lib; { description = "Official ProtonVPN Linux app"; homepage = "https://github.com/ProtonVPN/linux-app"; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; license = licenses.gpl3Plus; mainProgram = "protonvpn"; platforms = platforms.linux; diff --git a/pkgs/applications/networking/remote/freerdp/3.nix b/pkgs/applications/networking/remote/freerdp/3.nix index 17da5643a9a11..b25e090bf8b48 100644 --- a/pkgs/applications/networking/remote/freerdp/3.nix +++ b/pkgs/applications/networking/remote/freerdp/3.nix @@ -202,7 +202,7 @@ stdenv.mkDerivation (finalAttrs: { ''; homepage = "https://www.freerdp.com/"; license = licenses.asl20; - maintainers = with maintainers; [ peterhoeg lheckemann ]; + maintainers = with maintainers; [ peterhoeg ]; platforms = platforms.unix; }; }) diff --git a/pkgs/applications/networking/remote/freerdp/default.nix b/pkgs/applications/networking/remote/freerdp/default.nix index fd34c054d2091..e2b974a41e40c 100644 --- a/pkgs/applications/networking/remote/freerdp/default.nix +++ b/pkgs/applications/networking/remote/freerdp/default.nix @@ -207,7 +207,7 @@ stdenv.mkDerivation rec { homepage = "https://www.freerdp.com/"; changelog = "https://github.com/FreeRDP/FreeRDP/releases/tag/${src.rev}"; license = licenses.asl20; - maintainers = with maintainers; [ peterhoeg lheckemann ]; + maintainers = with maintainers; [ peterhoeg ]; platforms = platforms.unix; }; } diff --git a/pkgs/applications/networking/trayscale/default.nix b/pkgs/applications/networking/trayscale/default.nix index 5bb826e77d0a8..d6f2f2ef04476 100644 --- a/pkgs/applications/networking/trayscale/default.nix +++ b/pkgs/applications/networking/trayscale/default.nix @@ -11,16 +11,16 @@ buildGoModule rec { pname = "trayscale"; - version = "0.12.3"; + version = "0.12.4"; src = fetchFromGitHub { owner = "DeedleFake"; repo = "trayscale"; rev = "v${version}"; - hash = "sha256-2mGPbH74a9d1uhRGMSEfrzCnwjgdgbopu20K9/g6wg0="; + hash = "sha256-quy1maeC1ebVzMvN+JzKf8AmMbipju9vvdTU03SyNnc="; }; - vendorHash = "sha256-Iedd8WsJPAVQexRqDSLAmv7MAWc4IFQXHk6XpnStMps="; + vendorHash = "sha256-lGjJLqEGBFd2aYm82xrDfLK90Mcrhb7bMtXSNZpp/bM="; subPackages = [ "cmd/trayscale" ]; diff --git a/pkgs/applications/networking/znc/modules.nix b/pkgs/applications/networking/znc/modules.nix index 91c2ec526d1c3..7478461947299 100644 --- a/pkgs/applications/networking/znc/modules.nix +++ b/pkgs/applications/networking/znc/modules.nix @@ -77,7 +77,7 @@ in description = "ZNC clientaway module"; homepage = "https://github.com/kylef/znc-contrib"; license = licenses.gpl2; - maintainers = with maintainers; [ kiwi ]; + maintainers = with maintainers; [ ]; }; }; @@ -117,7 +117,7 @@ in description = "ZNC ignore module"; homepage = "https://github.com/kylef/znc-contrib"; license = licenses.gpl2; - maintainers = with maintainers; [ kiwi ]; + maintainers = with maintainers; [ ]; }; }; @@ -137,7 +137,7 @@ in description = "Palaver ZNC module"; homepage = "https://github.com/cocodelabs/znc-palaver"; license = licenses.mit; - maintainers = with maintainers; [ kiwi szlend ]; + maintainers = with maintainers; [ szlend ]; }; }; diff --git a/pkgs/applications/office/clockify/default.nix b/pkgs/applications/office/clockify/default.nix index 6acb243acec76..8bcd2785bc22c 100644 --- a/pkgs/applications/office/clockify/default.nix +++ b/pkgs/applications/office/clockify/default.nix @@ -25,7 +25,7 @@ appimageTools.wrapType2 rec { description = "Free time tracker and timesheet app that lets you track work hours across projects"; homepage = "https://clockify.me"; license = licenses.unfree; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; mainProgram = "clockify"; platforms = [ "x86_64-linux" ]; }; diff --git a/pkgs/applications/office/morgen/default.nix b/pkgs/applications/office/morgen/default.nix index 7bae5b5388d7a..433b8855a9a21 100644 --- a/pkgs/applications/office/morgen/default.nix +++ b/pkgs/applications/office/morgen/default.nix @@ -54,7 +54,7 @@ stdenv.mkDerivation rec { mainProgram = "morgen"; sourceProvenance = with sourceTypes; [ binaryNativeCode ]; license = licenses.unfree; - maintainers = with maintainers; [ justanotherariel wolfangaukang ]; + maintainers = with maintainers; [ justanotherariel ]; platforms = [ "x86_64-linux" ]; }; } diff --git a/pkgs/applications/office/paperless-ngx/default.nix b/pkgs/applications/office/paperless-ngx/default.nix index a46498a0f0017..cb380c8c2193a 100644 --- a/pkgs/applications/office/paperless-ngx/default.nix +++ b/pkgs/applications/office/paperless-ngx/default.nix @@ -24,13 +24,13 @@ }: let - version = "2.9.0"; + version = "2.10.1"; src = fetchFromGitHub { owner = "paperless-ngx"; repo = "paperless-ngx"; rev = "refs/tags/v${version}"; - hash = "sha256-7dcZbuz3yi0sND6AEqIwIo9byeZheOpIAhmBpOW5lhU="; + hash = "sha256-M1S5ebdpw11Ot4h4xvbk/rbJxXom2dZ5Of+6eOlBIuE="; }; # subpath installation is broken with uvicorn >= 0.26 @@ -86,7 +86,7 @@ let cd src-ui ''; - npmDepsHash = "sha256-gLEzifZK8Ok1SOo3YIIV5pTx4cbedQh025VqkodYrYQ="; + npmDepsHash = "sha256-zmlYwlH2cnGbbKf6jt5zBLh0Iv3C9/xN0iA4xVetRNE="; nativeBuildInputs = [ pkg-config @@ -150,6 +150,7 @@ python.pkgs.buildPythonApplication rec { django-filter django-guardian django-multiselectfield + django-soft-delete djangorestframework djangorestframework-guardian2 drf-writable-nested @@ -165,7 +166,7 @@ python.pkgs.buildPythonApplication rec { ocrmypdf pathvalidate pdf2image - psycopg2 + psycopg python-dateutil python-dotenv python-gnupg diff --git a/pkgs/applications/office/qownnotes/default.nix b/pkgs/applications/office/qownnotes/default.nix index 12f76073d410c..53563d72d6584 100644 --- a/pkgs/applications/office/qownnotes/default.nix +++ b/pkgs/applications/office/qownnotes/default.nix @@ -21,14 +21,14 @@ let pname = "qownnotes"; appname = "QOwnNotes"; - version = "24.6.1"; + version = "24.6.3"; in stdenv.mkDerivation { inherit pname version; src = fetchurl { url = "https://github.com/pbek/QOwnNotes/releases/download/v${version}/qownnotes-${version}.tar.xz"; - hash = "sha256-FS4VJtTh0LIrrIK+IJxSBqcEsNU7/e6KG3190FLAQC4="; + hash = "sha256-UdWyS5DalnGDoNEOx8d9MglKpJeqOXY1mTgLl3r/9gY="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/office/scribus/default.nix b/pkgs/applications/office/scribus/default.nix index 941f34231ca94..85c0afe9db66a 100644 --- a/pkgs/applications/office/scribus/default.nix +++ b/pkgs/applications/office/scribus/default.nix @@ -70,7 +70,6 @@ stdenv.mkDerivation (finalAttrs: { meta = with lib; { maintainers = with maintainers; [ - kiwi arthsmn ]; description = "Desktop Publishing (DTP) and Layout program"; diff --git a/pkgs/applications/office/treesheets/default.nix b/pkgs/applications/office/treesheets/default.nix index cff458a63fd3f..c2a84adc2a0da 100644 --- a/pkgs/applications/office/treesheets/default.nix +++ b/pkgs/applications/office/treesheets/default.nix @@ -12,13 +12,13 @@ stdenv.mkDerivation rec { pname = "treesheets"; - version = "0-unstable-2024-06-09"; + version = "0-unstable-2024-06-20"; src = fetchFromGitHub { owner = "aardappel"; repo = "treesheets"; - rev = "c753ce40686c3044eb7fb653bb913d1610096cd1"; - hash = "sha256-WpbG2RY7z71GBSDjv/VjcFsGcb/YK7P4oMVEydsYpuw="; + rev = "d363b4207281caaa6f3b84af93b0cd56c1855692"; + hash = "sha256-aZIt0DAGDQmIeLZHXjYao5CUhjLp9pjTiXJyoDi0kpQ="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/plasma-mobile/plasma-dialer.nix b/pkgs/applications/plasma-mobile/plasma-dialer.nix index 5a5132cd90519..975d4571a16e9 100644 --- a/pkgs/applications/plasma-mobile/plasma-dialer.nix +++ b/pkgs/applications/plasma-mobile/plasma-dialer.nix @@ -82,6 +82,6 @@ mkDerivation rec { mainProgram = "plasmaphonedialer"; homepage = "https://invent.kde.org/plasma-mobile/plasma-dialer"; license = licenses.gpl3Plus; - maintainers = with maintainers; [ samueldr ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/applications/plasma-mobile/plasma-phonebook.nix b/pkgs/applications/plasma-mobile/plasma-phonebook.nix index bc186b67d3177..67164f548d1e0 100644 --- a/pkgs/applications/plasma-mobile/plasma-phonebook.nix +++ b/pkgs/applications/plasma-mobile/plasma-phonebook.nix @@ -37,6 +37,6 @@ mkDerivation rec { homepage = "https://invent.kde.org/plasma-mobile/plasma-phonebook"; # https://invent.kde.org/plasma-mobile/plasma-phonebook/-/commit/3ac27760417e51c051c5dd44155c3f42dd000e4f license = licenses.gpl3Plus; - maintainers = with maintainers; [ samueldr ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/applications/plasma-mobile/plasma-settings.nix b/pkgs/applications/plasma-mobile/plasma-settings.nix index 28047954304a1..c30cda1cd8393 100644 --- a/pkgs/applications/plasma-mobile/plasma-settings.nix +++ b/pkgs/applications/plasma-mobile/plasma-settings.nix @@ -53,6 +53,6 @@ mkDerivation rec { homepage = "https://invent.kde.org/plasma-mobile/plasma-settings"; # https://invent.kde.org/plasma-mobile/plasma-settings/-/commit/a59007f383308503e59498b3036e1483bca26e35 license = licenses.gpl2Plus; - maintainers = with maintainers; [ samueldr ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/applications/plasma-mobile/spacebar.nix b/pkgs/applications/plasma-mobile/spacebar.nix index 7ae6e7684acc8..8dce4192a08c1 100644 --- a/pkgs/applications/plasma-mobile/spacebar.nix +++ b/pkgs/applications/plasma-mobile/spacebar.nix @@ -52,6 +52,6 @@ mkDerivation { mainProgram = "spacebar"; homepage = "https://invent.kde.org/plasma-mobile/spacebar"; license = licenses.gpl2Plus; - maintainers = with maintainers; [ samueldr ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/applications/radio/qlog/default.nix b/pkgs/applications/radio/qlog/default.nix index 2f14292e66704..7ec6756f20aa3 100644 --- a/pkgs/applications/radio/qlog/default.nix +++ b/pkgs/applications/radio/qlog/default.nix @@ -16,13 +16,13 @@ stdenv.mkDerivation rec { pname = "qlog"; - version = "0.35.2"; + version = "0.36.0"; src = fetchFromGitHub { owner = "foldynl"; repo = "QLog"; rev = "v${version}"; - hash = "sha256-3ht3/J4uJ7Nyfp0xpVDYa8GnV/EvHjf09XGSEBLRGZU="; + hash = "sha256-YbjtN08zEj8rlRDC5tS/JsBOH70DV98wmL6pFQTehgg="; fetchSubmodules = true; }; diff --git a/pkgs/applications/science/electronics/gtkwave/default.nix b/pkgs/applications/science/electronics/gtkwave/default.nix index 3e0f3613ba903..d28a5cf809065 100644 --- a/pkgs/applications/science/electronics/gtkwave/default.nix +++ b/pkgs/applications/science/electronics/gtkwave/default.nix @@ -16,11 +16,11 @@ stdenv.mkDerivation rec { pname = "gtkwave"; - version = "3.3.119"; + version = "3.3.120"; src = fetchurl { url = "mirror://sourceforge/gtkwave/${pname}-gtk3-${version}.tar.gz"; - sha256 = "sha256-6rPgnnZBEVwHhIv7MPfdDDu+K4y+RQF+leB327pqwDg="; + sha256 = "sha256-XalIY/suXYjMAZ4r/cZ2AiOYETiUtYXYZOEcqDQbJNg="; }; nativeBuildInputs = [ pkg-config wrapGAppsHook3 ]; diff --git a/pkgs/applications/science/logic/cbmc/default.nix b/pkgs/applications/science/logic/cbmc/default.nix index dcf5b5bb37fa2..0a81b2a09ef1d 100644 --- a/pkgs/applications/science/logic/cbmc/default.nix +++ b/pkgs/applications/science/logic/cbmc/default.nix @@ -13,13 +13,13 @@ stdenv.mkDerivation rec { pname = "cbmc"; - version = "5.95.1"; + version = "6.0.0"; src = fetchFromGitHub { owner = "diffblue"; repo = pname; rev = "${pname}-${version}"; - sha256 = "sha256-fDLSo5EeHyPTliAqFp+5mfaB0iZXIMXeMyF21fjl5k4="; + sha256 = "sha256-mPRkkKN7Hz9Qi6a3fEwVFh7a9OaBFcksNw9qwNOarao="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/science/logic/lean4/default.nix b/pkgs/applications/science/logic/lean4/default.nix index ac41b03643dc7..2ec05098f4078 100644 --- a/pkgs/applications/science/logic/lean4/default.nix +++ b/pkgs/applications/science/logic/lean4/default.nix @@ -10,13 +10,13 @@ stdenv.mkDerivation (finalAttrs: { pname = "lean4"; - version = "4.7.0"; + version = "4.8.0"; src = fetchFromGitHub { owner = "leanprover"; repo = "lean4"; rev = "v${finalAttrs.version}"; - hash = "sha256-jHY8BhDotfGcMS0Xzl5iawqCaug3dDEKuD5Y1WcM06I="; + hash = "sha256-R75RrAQb/tRTtMvy/ddLl1KQaA7V71nocvjIS9geMrg="; }; postPatch = '' diff --git a/pkgs/applications/science/math/R/default.nix b/pkgs/applications/science/math/R/default.nix index 5ceb413a24211..b6fac3cca9e5a 100644 --- a/pkgs/applications/science/math/R/default.nix +++ b/pkgs/applications/science/math/R/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchurl, fetchpatch, bzip2, gfortran, libX11, libXmu, libXt, libjpeg, libpng +{ lib, stdenv, fetchurl, bzip2, gfortran, libX11, libXmu, libXt, libjpeg, libpng , libtiff, ncurses, pango, pcre2, perl, readline, tcl, texlive, texliveSmall, tk, xz, zlib , less, texinfo, graphviz, icu, pkg-config, bison, imake, which, jdk, blas, lapack , curl, Cocoa, Foundation, libobjc, libcxx, tzdata @@ -15,13 +15,13 @@ assert (!blas.isILP64) && (!lapack.isILP64); stdenv.mkDerivation (finalAttrs: { pname = "R"; - version = "4.3.3"; + version = "4.4.1"; src = let inherit (finalAttrs) pname version; in fetchurl { url = "https://cran.r-project.org/src/base/R-${lib.versions.major version}/${pname}-${version}.tar.gz"; - sha256 = "sha256-gIUSMTk7hb84d+6eObKC51Dthkxexgy9aObhOfBSAzA="; + sha256 = "sha256-tMtnXequtymdOyZdIYzeQ/GSlRzluJt7saUUijay2U0="; }; outputs = [ "out" "tex" ]; @@ -37,12 +37,6 @@ stdenv.mkDerivation (finalAttrs: { patches = [ ./no-usr-local-search-paths.patch - (fetchpatch { - # https://hiddenlayer.com/research/r-bitrary-code-execution/ - name = "CVE-2024-27322.patch"; - url = "https://github.com/r-devel/r-svn/commit/f7c46500f455eb4edfc3656c3fa20af61b16abb7.patch"; - hash = "sha256-CH2mMmie9E96JeGSC7UGm7/roUNhK5xv6HO53N2ixEI="; - }) ]; # Test of the examples for package 'tcltk' fails in Darwin sandbox. See: diff --git a/pkgs/applications/science/math/eigenmath/default.nix b/pkgs/applications/science/math/eigenmath/default.nix index cb6748ec37796..a120de87b9ff1 100644 --- a/pkgs/applications/science/math/eigenmath/default.nix +++ b/pkgs/applications/science/math/eigenmath/default.nix @@ -7,13 +7,13 @@ stdenv.mkDerivation rec { pname = "eigenmath"; - version = "3.26-unstable-2024-06-09"; + version = "3.27-unstable-2024-06-20"; src = fetchFromGitHub { owner = "georgeweigt"; repo = pname; - rev = "285fc0133f0e7bb5e1e220b75246ce542ae50269"; - hash = "sha256-ddED3PaHSSupe/QqMYj88GCmh9IrRvpAd4/WEpRTN00="; + rev = "c3e3da104dbef888c3e52659134d5e9bdc12764d"; + hash = "sha256-fqCphnRQw79v7ZTCZU9ucm/R7BKY7yCZYDSnxD7uRS8="; }; checkPhase = let emulator = stdenv.hostPlatform.emulator buildPackages; in '' diff --git a/pkgs/applications/science/misc/boinc/default.nix b/pkgs/applications/science/misc/boinc/default.nix index 0c559a530e089..68134a99a2035 100644 --- a/pkgs/applications/science/misc/boinc/default.nix +++ b/pkgs/applications/science/misc/boinc/default.nix @@ -27,14 +27,14 @@ stdenv.mkDerivation rec { pname = "boinc"; - version = "8.0.2"; + version = "8.0.3"; src = fetchFromGitHub { name = "${pname}-${version}-src"; owner = "BOINC"; repo = "boinc"; rev = "client_release/${lib.versions.majorMinor version}/${version}"; - hash = "sha256-e0zEdiN3QQHj6MNGd1pfaZf3o9rOpCTmuNSJQb3sss4="; + hash = "sha256-kkEEJp7NTpHwbo03BGjjJAraFQIJcoNyV+oDsCZlzPQ="; }; nativeBuildInputs = [ libtool automake autoconf m4 pkg-config ]; diff --git a/pkgs/applications/system/glances/default.nix b/pkgs/applications/system/glances/default.nix index 69a94efbbd8a4..4be42e97344a6 100644 --- a/pkgs/applications/system/glances/default.nix +++ b/pkgs/applications/system/glances/default.nix @@ -26,14 +26,15 @@ buildPythonApplication rec { pname = "glances"; - version = "4.0.7"; + # use unstable to fix a build error for aarch64. + version = "4.0.8-unstable-2024-06-09"; disabled = isPyPy; src = fetchFromGitHub { owner = "nicolargo"; repo = "glances"; - rev = "refs/tags/v${version}"; - hash = "sha256-Vfsco8Wno57aPM7PtwCc/gI+6FnAG3H/t5OAUngDU5o="; + rev = "051006e12f7c90281dda4af60871b535b0dcdcb9"; + hash = "sha256-iCK5soTACQwtCVMmMsFaqXvZtTKX9WbTul0mUeSWC2M="; }; # On Darwin this package segfaults due to mismatch of pure and impure diff --git a/pkgs/applications/terminal-emulators/iterm2/default.nix b/pkgs/applications/terminal-emulators/iterm2/default.nix index f88c3c6753794..96e387e49123b 100644 --- a/pkgs/applications/terminal-emulators/iterm2/default.nix +++ b/pkgs/applications/terminal-emulators/iterm2/default.nix @@ -11,11 +11,11 @@ stdenvNoCC.mkDerivation rec { pname = "iterm2"; - version = "3.4.23"; + version = "3.5.2"; src = fetchzip { url = "https://iterm2.com/downloads/stable/iTerm2-${lib.replaceStrings ["."] ["_"] version}.zip"; - hash = "sha256-hQV/jGT/3JOvHBICyCeNnuSYMeeF7lfErN55f+Frg2w="; + hash = "sha256-WiRRxklI3A/3MtJY63jAkUVe8qa5jfRACzUESfwAmmw="; }; dontFixup = true; diff --git a/pkgs/applications/version-management/git-branchless/default.nix b/pkgs/applications/version-management/git-branchless/default.nix index cccbb0503fedd..44047945728a9 100644 --- a/pkgs/applications/version-management/git-branchless/default.nix +++ b/pkgs/applications/version-management/git-branchless/default.nix @@ -27,12 +27,14 @@ rustPlatform.buildRustPackage rec { patches = [ # Fix tests with Git 2.44.0+ (fetchpatch { - url = "https://github.com/arxanas/git-branchless/pull/1245.patch"; + name = "1245.patch"; # https://github.com/arxanas/git-branchless/pull/1245 + url = "https://github.com/arxanas/git-branchless/commit/c8436aed3d616409b4d6fb1eedb383077f435497.patch"; hash = "sha256-gBm0A478Uhg9IQVLQppvIeTa8s1yHUMddxiUbpHUvGw="; }) # Fix tests with Git 2.44.0+ (fetchpatch { - url = "https://github.com/arxanas/git-branchless/pull/1161.patch"; + name = "1161.patch"; # https://github.com/arxanas/git-branchless/pull/1161 + url = "https://github.com/arxanas/git-branchless/commit/6e1f26900a0dd60d10d9aa3552cab9181fa7be03.patch"; hash = "sha256-KHobEIXhlDar8CvIVUi4I695jcJZXgGRhU86b99x86Y="; }) ]; diff --git a/pkgs/applications/version-management/git-publish/default.nix b/pkgs/applications/version-management/git-publish/default.nix index d84c5f096b8ce..dd752b94843d2 100644 --- a/pkgs/applications/version-management/git-publish/default.nix +++ b/pkgs/applications/version-management/git-publish/default.nix @@ -26,7 +26,7 @@ stdenv.mkDerivation rec { meta = { description = "Prepare and store patch revisions as git tags"; license = lib.licenses.mit; - maintainers = [ lib.maintainers.lheckemann ]; + maintainers = [ ]; homepage = "https://github.com/stefanha/git-publish"; mainProgram = "git-publish"; }; diff --git a/pkgs/applications/video/deface/default.nix b/pkgs/applications/video/deface/default.nix index 428275535af49..0b0a2d0859810 100644 --- a/pkgs/applications/video/deface/default.nix +++ b/pkgs/applications/video/deface/default.nix @@ -8,21 +8,23 @@ python3.pkgs.buildPythonApplication rec { pname = "deface"; - version = "1.4.0"; - format = "pyproject"; + version = "1.5.0"; + pyproject = true; + + disabled = python3.pythonOlder "3.8"; src = fetchFromGitHub { owner = "ORB-HD"; repo = "deface"; - rev = "v${version}"; - hash = "sha256-tLNTgdnKKmyYHVajz0dHIb7cvC1by5LQ5CFIbMvPEYk="; + rev = "refs/tags/v${version}"; + hash = "sha256-/mXWeL6OSgW4BMXtAZD/3UxQUGt7UE5ZvH8CXNCueJo="; }; - nativeBuildInputs = with python3.pkgs; [ + build-system = with python3.pkgs; [ setuptools-scm ]; - propagatedBuildInputs = with python3.pkgs; [ + dependencies = with python3.pkgs; [ imageio imageio-ffmpeg numpy @@ -38,17 +40,21 @@ python3.pkgs.buildPythonApplication rec { ''--prefix LD_LIBRARY_PATH : "${lib.makeLibraryPath [ pkgs.onnxruntime ]}"'' ]; - patchPhase = '' - substituteInPlace pyproject.toml requirements.txt --replace "opencv-python" "opencv" + postPatch = '' + substituteInPlace pyproject.toml \ + --replace-fail "opencv-python" "opencv" ''; pythonImportsCheck = [ "deface" "onnx" "onnxruntime" ]; - meta = with lib; { + meta = { description = "Video anonymization by face detection"; homepage = "https://github.com/ORB-HD/deface"; - license = licenses.mit; - maintainers = with maintainers; [ lurkki ]; + changelog = "https://github.com/ORB-HD/deface/releases/tag/v${version}"; + license = lib.licenses.mit; + maintainers = with lib.maintainers; [ lurkki ]; mainProgram = "deface"; + # terminate called after throwing an instance of 'onnxruntime::OnnxRuntimeException' + broken = stdenv.hostPlatform.system == "aarch64-linux"; }; } diff --git a/pkgs/applications/video/flowblade/default.nix b/pkgs/applications/video/flowblade/default.nix index 423f45ba590f9..92f035ca9018d 100644 --- a/pkgs/applications/video/flowblade/default.nix +++ b/pkgs/applications/video/flowblade/default.nix @@ -5,13 +5,13 @@ stdenv.mkDerivation rec { pname = "flowblade"; - version = "2.16.2"; + version = "2.16.3"; src = fetchFromGitHub { owner = "jliljebl"; repo = pname; rev = "v${version}"; - sha256 = "sha256-dLrrV+ZMXqcJMf69PkgLCDCCPBrUadLtT7vm06Y+1rA="; + sha256 = "sha256-WXB071lndw4/APTgwxNVjmYBvzMXZdLn1OaWqBXjW2Q="; }; buildInputs = [ diff --git a/pkgs/applications/video/freetube/default.nix b/pkgs/applications/video/freetube/default.nix index 3d86b182a1515..72bdd1f97916e 100644 --- a/pkgs/applications/video/freetube/default.nix +++ b/pkgs/applications/video/freetube/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "freetube"; - version = "0.20.0"; + version = "0.21.0"; src = fetchurl { url = "https://github.com/FreeTubeApp/FreeTube/releases/download/v${version}-beta/freetube_${version}_amd64.AppImage"; - sha256 = "sha256-7k5hyiK3m+117AxmsoecGsgXSxs8xhyTf8+rl4oBbB8="; + sha256 = "sha256-jTDJ0oyDrgOM6T+nwiOakm3QUqKfK2UNY6AfpoaJzd0="; }; passthru.tests = nixosTests.freetube; diff --git a/pkgs/applications/video/hypnotix/default.nix b/pkgs/applications/video/hypnotix/default.nix index e164666e85f18..00f8eb6b024ba 100644 --- a/pkgs/applications/video/hypnotix/default.nix +++ b/pkgs/applications/video/hypnotix/default.nix @@ -14,13 +14,13 @@ stdenv.mkDerivation rec { pname = "hypnotix"; - version = "4.4"; + version = "4.5"; src = fetchFromGitHub { owner = "linuxmint"; repo = "hypnotix"; rev = version; - hash = "sha256-SGKa3yo3iEDAjsvfa6dBfM7sAnBVr0pB6zLKQb6e4Ys="; + hash = "sha256-tcBBPJr9C+3FC8VWAM+KzETKAovfyehBvlmn7mIR7VQ="; }; patches = [ diff --git a/pkgs/applications/video/kodi/addons/skyvideoitalia/default.nix b/pkgs/applications/video/kodi/addons/skyvideoitalia/default.nix new file mode 100644 index 0000000000000..c791391578c70 --- /dev/null +++ b/pkgs/applications/video/kodi/addons/skyvideoitalia/default.nix @@ -0,0 +1,31 @@ +{ lib, rel, buildKodiAddon, fetchzip, addonUpdateScript, requests, inputstreamhelper, simplecache }: + +buildKodiAddon rec { + pname = "skyvideoitalia"; + namespace = "plugin.video.skyvideoitalia"; + version = "1.0.4"; + + src = fetchzip { + url = "https://mirrors.kodi.tv/addons/${lib.toLower rel}/${namespace}/${namespace}-${version}.zip"; + sha256 = "sha256-ciLtqT++6bn7la4xRVvlRwzbbUUUPN5WU35rJpR4l+w="; + }; + + propagatedBuildInputs = [ + requests + inputstreamhelper + simplecache + ]; + + passthru = { + updateScript = addonUpdateScript { + attrPath = "kodi.packages.skyvideoitalia"; + }; + }; + + meta = with lib; { + homepage = "https://www.github.com/nixxo/plugin.video.skyvideoitalia"; + description = "Show video content from the website of Sky Italia (video.sky.it). News, sport, entertainment and much more"; + license = licenses.gpl3Plus; + maintainers = teams.kodi.members; + }; +} diff --git a/pkgs/applications/video/mlv-app/default.nix b/pkgs/applications/video/mlv-app/default.nix index 72e53090d33c7..05c6799e4213b 100644 --- a/pkgs/applications/video/mlv-app/default.nix +++ b/pkgs/applications/video/mlv-app/default.nix @@ -54,9 +54,7 @@ mkDerivation rec { description = "All in one MLV processing app that is pretty great"; homepage = "https://mlv.app"; license = licenses.gpl3; - maintainers = with maintainers; [ - kiwi - ]; + maintainers = with maintainers; [ ]; platforms = platforms.linux; mainProgram = "mlvapp"; }; diff --git a/pkgs/applications/video/mpv/scripts/mpv-notify-send.nix b/pkgs/applications/video/mpv/scripts/mpv-notify-send.nix index 623e5db22664a..b103a45d275bf 100644 --- a/pkgs/applications/video/mpv/scripts/mpv-notify-send.nix +++ b/pkgs/applications/video/mpv/scripts/mpv-notify-send.nix @@ -21,7 +21,8 @@ buildLua rec { patches = [ # show title of online videos instead of url (fetchpatch { - url = "https://github.com/emilazy/mpv-notify-send/pull/6.patch"; + name = "6.patch"; # https://github.com/emilazy/mpv-notify-send/pull/6 + url = "https://github.com/emilazy/mpv-notify-send/commit/948347e14890e15e89cd1e069beb1140e2d01dce.patch"; hash = "sha256-7aXQ8qeqG4yX0Uyn09xCIESnwPZsb6Frd7C49XgbpFw="; }) ]; diff --git a/pkgs/applications/video/mpv/scripts/mpvacious.nix b/pkgs/applications/video/mpv/scripts/mpvacious.nix index 659dc498f0b11..34776679aa257 100644 --- a/pkgs/applications/video/mpv/scripts/mpvacious.nix +++ b/pkgs/applications/video/mpv/scripts/mpvacious.nix @@ -10,13 +10,13 @@ buildLua rec { pname = "mpvacious"; - version = "0.34"; + version = "0.35"; src = fetchFromGitHub { owner = "Ajatt-Tools"; repo = "mpvacious"; rev = "v${version}"; - sha256 = "sha256-YsbeMWGpRi9wUdnrMA2YQXXWQUALxDOTs+gBJ56okkI="; + sha256 = "sha256-LcO17zkGkXWqSjWPTA3cVwRnmSrhTlS3W4RhhYaKgY4="; }; passthru.updateScript = gitUpdater { rev-prefix = "v"; }; diff --git a/pkgs/applications/video/mpv/scripts/thumbnail.nix b/pkgs/applications/video/mpv/scripts/thumbnail.nix index 51784f012f68b..fc37b1a50dea8 100644 --- a/pkgs/applications/video/mpv/scripts/thumbnail.nix +++ b/pkgs/applications/video/mpv/scripts/thumbnail.nix @@ -8,13 +8,13 @@ buildLua rec { pname = "mpv-thumbnail-script"; - version = "0.5.3"; + version = "0.5.4"; src = fetchFromGitHub { owner = "marzzzello"; repo = "mpv_thumbnail_script"; rev = version; - sha256 = "sha256-J24Rou7BTE7zoiPlBkWuO9dtYJiuzkuwB4FROuzXzag="; + sha256 = "sha256-nflavx25skLj9kitneL6Uz3zI2DyMMhQC595npofzbQ="; }; passthru.updateScript = gitUpdater { }; diff --git a/pkgs/applications/video/obs-studio/plugins/obs-vertical-canvas.nix b/pkgs/applications/video/obs-studio/plugins/obs-vertical-canvas.nix index 82767da10d998..7b6f98c2b63d7 100644 --- a/pkgs/applications/video/obs-studio/plugins/obs-vertical-canvas.nix +++ b/pkgs/applications/video/obs-studio/plugins/obs-vertical-canvas.nix @@ -9,13 +9,13 @@ stdenv.mkDerivation rec { pname = "obs-vertical-canvas"; - version = "1.4.2"; + version = "1.4.3"; src = fetchFromGitHub { owner = "Aitum"; repo = "obs-vertical-canvas"; rev = version; - sha256 = "sha256-3lFM7bOzsKex6JUdbcw8MNS4PRzaN/E/vngdukgfV0s="; + sha256 = "sha256-nzuPjVwtWGPSNLnWNT4D03j1xZp37HH77t1DnilSQ8E="; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/applications/video/webtorrent_desktop/default.nix b/pkgs/applications/video/webtorrent_desktop/default.nix index 75a8d9f5c639f..60ef7c57cdc8a 100644 --- a/pkgs/applications/video/webtorrent_desktop/default.nix +++ b/pkgs/applications/video/webtorrent_desktop/default.nix @@ -12,12 +12,14 @@ buildNpmPackage { patches = [ # electron 27 fix (fetchpatch { - url = "https://github.com/webtorrent/webtorrent-desktop/pull/2388.patch"; + name = "2388.patch"; # https://github.com/webtorrent/webtorrent-desktop/pull/2388 + url = "https://github.com/webtorrent/webtorrent-desktop/compare/ebaf9cf8487dbd9e14a9a0c5adc3eab23b199e58...0c3e55d1f091bf66a342e2732550ebeccc2e4169.patch"; hash = "sha256-gam5oAZtsaiCNFwecA5ff0nhraySLx3SOHlb/js+cPM="; }) # startup fix (fetchpatch { - url = "https://github.com/webtorrent/webtorrent-desktop/pull/2389.patch"; + name = "2389.patch"; # https://github.com/webtorrent/webtorrent-desktop/pull/2389 + url = "https://github.com/webtorrent/webtorrent-desktop/commit/407046d150ed7ff876a5e1978f68630e9c8f0074.patch"; hash = "sha256-hBJGLNNjcGRhYOFlLm/RL0po+70tEeJtR6Y/CfacPAI="; }) ]; diff --git a/pkgs/applications/virtualization/cloud-hypervisor/Cargo.lock b/pkgs/applications/virtualization/cloud-hypervisor/Cargo.lock index 18d10d781df63..302b760135471 100644 --- a/pkgs/applications/virtualization/cloud-hypervisor/Cargo.lock +++ b/pkgs/applications/virtualization/cloud-hypervisor/Cargo.lock @@ -74,9 +74,9 @@ dependencies = [ [[package]] name = "anstyle-wincon" -version = "3.0.2" +version = "3.0.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1cd54b81ec8d6180e24654d0b371ad22fc3dd083b6ff8ba325b72e00c87660a7" +checksum = "61a38449feb7068f52bb06c12759005cf459ee52bb4adc1d5a7c4322d716fb19" dependencies = [ "anstyle", "windows-sys 0.52.0", @@ -92,6 +92,7 @@ checksum = "0952808a6c2afd1aa8947271f3a60f1a6763c7b912d210184c5149b5cf147247" name = "api_client" version = "0.1.0" dependencies = [ + "thiserror", "vmm-sys-util", ] @@ -123,12 +124,14 @@ dependencies = [ [[package]] name = "async-broadcast" -version = "0.5.1" +version = "0.7.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7c48ccdbf6ca6b121e0f586cbc0e73ae440e56c67c30fa0873b4e110d9c26d2b" +checksum = "258b52a1aa741b9f09783b2d86cf0aeeb617bbf847f6933340a39644227acbdb" dependencies = [ - "event-listener 2.5.3", + "event-listener 5.3.0", + "event-listener-strategy 0.5.1", "futures-core", + "pin-project-lite", ] [[package]] @@ -152,57 +155,36 @@ checksum = "b10202063978b3351199d68f8b22c4e47e4b1b822f8d43fd862d5ea8c006b29a" dependencies = [ "async-task", "concurrent-queue", - "fastrand 2.0.2", - "futures-lite 2.3.0", + "fastrand", + "futures-lite", "slab", ] [[package]] name = "async-fs" -version = "1.6.0" +version = "2.1.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "279cf904654eeebfa37ac9bb1598880884924aab82e290aa65c9e77a0e142e06" +checksum = "ebcd09b382f40fcd159c2d695175b2ae620ffa5f3bd6f664131efff4e8b9e04a" dependencies = [ - "async-lock 2.8.0", - "autocfg", + "async-lock", "blocking", - "futures-lite 1.13.0", + "futures-lite", ] [[package]] name = "async-io" -version = "1.13.0" +version = "2.3.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0fc5b45d93ef0529756f812ca52e44c221b35341892d3dcc34132ac02f3dd2af" +checksum = "0d6baa8f0178795da0e71bc42c9e5d13261aac7ee549853162e66a241ba17964" dependencies = [ - "async-lock 2.8.0", - "autocfg", - "cfg-if", - "concurrent-queue", - "futures-lite 1.13.0", - "log", - "parking", - "polling 2.8.0", - "rustix 0.37.27", - "slab", - "socket2", - "waker-fn", -] - -[[package]] -name = "async-io" -version = "2.3.2" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "dcccb0f599cfa2f8ace422d3555572f47424da5648a4382a9dd0310ff8210884" -dependencies = [ - "async-lock 3.3.0", + "async-lock", "cfg-if", "concurrent-queue", "futures-io", - "futures-lite 2.3.0", + "futures-lite", "parking", - "polling 3.6.0", - "rustix 0.38.32", + "polling", + "rustix", "slab", "tracing", "windows-sys 0.52.0", @@ -210,15 +192,6 @@ dependencies = [ [[package]] name = "async-lock" -version = "2.8.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "287272293e9d8c41773cec55e365490fe034813a2f172f502d6ddcf75b2f582b" -dependencies = [ - "event-listener 2.5.3", -] - -[[package]] -name = "async-lock" version = "3.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "d034b430882f8381900d3fe6f0aaa3ad94f2cb4ac519b429692a1bc2dda4ae7b" @@ -230,55 +203,58 @@ dependencies = [ [[package]] name = "async-process" -version = "1.8.1" +version = "2.2.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ea6438ba0a08d81529c69b36700fa2f95837bfe3e776ab39cde9c14d9149da88" +checksum = "a53fc6301894e04a92cb2584fedde80cb25ba8e02d9dc39d4a87d036e22f397d" dependencies = [ - "async-io 1.13.0", - "async-lock 2.8.0", + "async-channel", + "async-io", + "async-lock", "async-signal", + "async-task", "blocking", "cfg-if", - "event-listener 3.1.0", - "futures-lite 1.13.0", - "rustix 0.38.32", - "windows-sys 0.48.0", + "event-listener 5.3.0", + "futures-lite", + "rustix", + "tracing", + "windows-sys 0.52.0", ] [[package]] name = "async-recursion" -version = "1.1.0" +version = "1.1.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "30c5ef0ede93efbf733c1a727f3b6b5a1060bbedd5600183e66f6e4be4af0ec5" +checksum = "3b43422f69d8ff38f95f1b2bb76517c91589a924d1559a0e935d7c8ce0274c11" dependencies = [ "proc-macro2", "quote", - "syn 2.0.58", + "syn 2.0.66", ] [[package]] name = "async-signal" -version = "0.2.5" +version = "0.2.6" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9e47d90f65a225c4527103a8d747001fc56e375203592b25ad103e1ca13124c5" +checksum = "afe66191c335039c7bb78f99dc7520b0cbb166b3a1cb33a03f53d8a1c6f2afda" dependencies = [ - "async-io 2.3.2", - "async-lock 2.8.0", + "async-io", + "async-lock", "atomic-waker", "cfg-if", "futures-core", "futures-io", - "rustix 0.38.32", + "rustix", "signal-hook-registry", "slab", - "windows-sys 0.48.0", + "windows-sys 0.52.0", ] [[package]] name = "async-task" -version = "4.7.0" +version = "4.7.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fbb36e985947064623dbd357f727af08ffd077f93d696782f3c56365fa2e2799" +checksum = "8b75356056920673b02621b35afd0f7dda9306d03c79a30f5c56c44cf256e3de" [[package]] name = "async-trait" @@ -288,7 +264,7 @@ checksum = "c6fa2087f2753a7da8cc1c0dbfcf89579dd57458e36769de5ac750b4671737ca" dependencies = [ "proc-macro2", "quote", - "syn 2.0.58", + "syn 2.0.66", ] [[package]] @@ -299,9 +275,9 @@ checksum = "1505bd5d3d116872e7271a6d4e16d81d0c8570876c8de68093a09ac269d8aac0" [[package]] name = "autocfg" -version = "1.2.0" +version = "1.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f1fdabc7756949593fe60f30ec81974b613357de856987752631dea1e3394c80" +checksum = "0c4b4d0bd25bd0b74681c0ad21497610ce1b7c91b1022cd21c80c6fbdd9476b0" [[package]] name = "backtrace" @@ -326,7 +302,7 @@ checksum = "a26b8cea8bb6a81b75a84603b9e096f05fa86db057904ef29be1deee900532bd" dependencies = [ "proc-macro2", "quote", - "syn 2.0.58", + "syn 2.0.66", ] [[package]] @@ -373,18 +349,15 @@ dependencies = [ [[package]] name = "blocking" -version = "1.5.1" +version = "1.6.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "6a37913e8dc4ddcc604f0c6d3bf2887c995153af3611de9e23c352b44c1b9118" +checksum = "703f41c54fc768e63e091340b424302bb1c29ef4aa0c7f10fe849dfb114d29ea" dependencies = [ "async-channel", - "async-lock 3.3.0", "async-task", - "fastrand 2.0.2", "futures-io", - "futures-lite 2.3.0", + "futures-lite", "piper", - "tracing", ] [[package]] @@ -401,9 +374,9 @@ checksum = "1fd0f2584146f6f2ef48085050886acf353beff7305ebd1ae69500e27c67f64b" [[package]] name = "cc" -version = "1.0.95" +version = "1.0.99" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d32a725bc159af97c3e629873bb9f88fb8cf8a4867175f76dc987815ea07c83b" +checksum = "96c51067fd44124faa7f870b4b1c969379ad32b2ba805aa959430ceaa384f695" [[package]] name = "cfg-if" @@ -412,6 +385,12 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "baf1de4339761588bc0619e3cbc0120ee582ebb74b53b4efbf79117bd2da40fd" [[package]] +name = "cfg_aliases" +version = "0.1.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "fd16c4719339c4530435d38e511904438d07cce7950afa3718a84ac36c10e89e" + +[[package]] name = "clap" version = "4.5.4" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -429,7 +408,7 @@ dependencies = [ "anstream", "anstyle", "clap_lex", - "strsim 0.11.1", + "strsim", "terminal_size", ] @@ -441,7 +420,7 @@ checksum = "98cc8fbded0c607b7ba9dd60cd98df59af97e84d24e49c8557331cfc26d301ce" [[package]] name = "cloud-hypervisor" -version = "39.0.0" +version = "40.0.0" dependencies = [ "anyhow", "api_client", @@ -478,9 +457,9 @@ checksum = "acbf1af155f9b9ef647e42cdc158db4b64a1b61f743629225fde6f3e0be2a7c7" [[package]] name = "concurrent-queue" -version = "2.4.0" +version = "2.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d16048cd947b08fa32c24458a22f5dc5e835264f689f4f5653210c69fd107363" +checksum = "4ca0197aee26d1ae37445ee532fefce43251d24cc7c166799f4d46817f1d3973" dependencies = [ "crossbeam-utils", ] @@ -514,9 +493,9 @@ dependencies = [ [[package]] name = "crossbeam-utils" -version = "0.8.19" +version = "0.8.20" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "248e3bacc7dc6baa3b21e405ee045c3047101a49145e7e9eca583ab4c2ca5345" +checksum = "22ec99545bb0ed0ea7bb9b8e1e9122ea386ff8a48c0922e43f36d45ab09e0e80" [[package]] name = "crypto-common" @@ -530,9 +509,9 @@ dependencies = [ [[package]] name = "darling" -version = "0.20.8" +version = "0.20.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "54e36fcd13ed84ffdfda6f5be89b31287cbb80c439841fe69e04841435464391" +checksum = "83b2eb4d90d12bdda5ed17de686c2acb4c57914f8f921b8da7e112b5a36f3fe1" dependencies = [ "darling_core", "darling_macro", @@ -540,27 +519,27 @@ dependencies = [ [[package]] name = "darling_core" -version = "0.20.8" +version = "0.20.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9c2cf1c23a687a1feeb728783b993c4e1ad83d99f351801977dd809b48d0a70f" +checksum = "622687fe0bac72a04e5599029151f5796111b90f1baaa9b544d807a5e31cd120" dependencies = [ "fnv", "ident_case", "proc-macro2", "quote", - "strsim 0.10.0", - "syn 2.0.58", + "strsim", + "syn 2.0.66", ] [[package]] name = "darling_macro" -version = "0.20.8" +version = "0.20.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a668eda54683121533a393014d8692171709ff57a7d61f187b6e782719f8933f" +checksum = "733cabb43482b1a1b53eee8583c2b9e8684d592215ea83efd305dd31bc2f0178" dependencies = [ "darling_core", "quote", - "syn 2.0.58", + "syn 2.0.66", ] [[package]] @@ -652,6 +631,12 @@ dependencies = [ ] [[package]] +name = "endi" +version = "1.1.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "a3d8a32ae18130a3c84dd492d4215c3d913c3b07c6b63c2eb3eb7ff1101ab7bf" + +[[package]] name = "enumflags2" version = "0.7.9" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -669,7 +654,7 @@ checksum = "5c785274071b1b420972453b306eeca06acf4633829db4223b58a2a8c5953bc4" dependencies = [ "proc-macro2", "quote", - "syn 2.0.58", + "syn 2.0.66", ] [[package]] @@ -723,23 +708,6 @@ dependencies = [ [[package]] name = "event-listener" -version = "2.5.3" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0206175f82b8d6bf6652ff7d71a1e27fd2e4efde587fd368662814d6ec1d9ce0" - -[[package]] -name = "event-listener" -version = "3.1.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d93877bcde0eb80ca09131a08d23f0a5c18a620b01db137dba666d18cd9b30c2" -dependencies = [ - "concurrent-queue", - "parking", - "pin-project-lite", -] - -[[package]] -name = "event-listener" version = "4.0.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "67b215c49b2b248c855fb73579eb1f4f26c38ffdc12973e20e07b91d78d5646e" @@ -793,18 +761,9 @@ dependencies = [ [[package]] name = "fastrand" -version = "1.9.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e51093e27b0797c359783294ca4f0a911c270184cb10f85783b118614a1501be" -dependencies = [ - "instant", -] - -[[package]] -name = "fastrand" -version = "2.0.2" +version = "2.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "658bd65b1cf4c852a3cc96f18a8ce7b5640f6b703f905c7d74532294c2a63984" +checksum = "9fc0510504f03c51ada170672ac806f1f105a88aa97a5281117e1ddc3368e51a" [[package]] name = "fdt" @@ -880,26 +839,11 @@ checksum = "a44623e20b9681a318efdd71c299b6b222ed6f231972bfe2f224ebad6311f0c1" [[package]] name = "futures-lite" -version = "1.13.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "49a9d51ce47660b1e808d3c990b4709f2f415d928835a17dfd16991515c46bce" -dependencies = [ - "fastrand 1.9.0", - "futures-core", - "futures-io", - "memchr", - "parking", - "pin-project-lite", - "waker-fn", -] - -[[package]] -name = "futures-lite" version = "2.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "52527eb5074e35e9339c6b4e8d12600c7128b68fb25dcb9fa9dec18f7c25f3a5" dependencies = [ - "fastrand 2.0.2", + "fastrand", "futures-core", "futures-io", "parking", @@ -914,7 +858,7 @@ checksum = "87750cf4b7a4c0625b1529e4c543c2182106e4dedc60a2a6455e00d212c489ac" dependencies = [ "proc-macro2", "quote", - "syn 2.0.58", + "syn 2.0.66", ] [[package]] @@ -983,9 +927,9 @@ dependencies = [ [[package]] name = "getrandom" -version = "0.2.13" +version = "0.2.14" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a06fddc2749e0528d2813f95e050e87e52c8cbbae56223b9babf73b3e53b0cc6" +checksum = "94b22e06ecb0110981051723910cbf0b5f5e09a2062dd7663334ee79a9d1286c" dependencies = [ "cfg-if", "js-sys", @@ -1071,8 +1015,9 @@ checksum = "b9e0384b61958566e926dc50660321d12159025e767c18e043daf26b70104c39" [[package]] name = "igvm" -version = "0.1.9" -source = "git+https://github.com/microsoft/igvm?branch=main#494aac2318df4111a2737d360ea46f74f5350223" +version = "0.3.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "2bc8970c7e36437c52af3b3ef1acaa5e334c2a95cd8ee9639d574830f48af17e" dependencies = [ "bitfield-struct", "crc32fast", @@ -1087,8 +1032,9 @@ dependencies = [ [[package]] name = "igvm_defs" -version = "0.1.9" -source = "git+https://github.com/microsoft/igvm?branch=main#494aac2318df4111a2737d360ea46f74f5350223" +version = "0.3.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "2c4942827cef415726296f6d62411afdb13c1b1924125f3222988f04bef33ad2" dependencies = [ "bitfield-struct", "open-enum", @@ -1116,17 +1062,6 @@ dependencies = [ ] [[package]] -name = "io-lifetimes" -version = "1.0.11" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "eae7b9aee968036d54dce06cebaefd919e4472e753296daccd6d344e3e2df0c2" -dependencies = [ - "hermit-abi", - "libc", - "windows-sys 0.48.0", -] - -[[package]] name = "io-uring" version = "0.6.3" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -1242,15 +1177,9 @@ dependencies = [ [[package]] name = "linux-raw-sys" -version = "0.3.8" +version = "0.4.14" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ef53942eb7bf7ff43a617b3e2c1c4a5ecf5944a7c1bc12d7ee39bbb15e5c1519" - -[[package]] -name = "linux-raw-sys" -version = "0.4.13" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "01cda141df6706de531b6c46c3a33ecca755538219bd484262fa09410c13539c" +checksum = "78b3ae25bc7c8c38cec158d1f2757ee79e9b3740fbc7ccf0e59e4b08d793fa89" [[package]] name = "lock_api" @@ -1282,15 +1211,6 @@ checksum = "6c8640c5d730cb13ebd907d8d04b52f55ac9a2eec55b440c8892f40d56c76c1d" [[package]] name = "memoffset" -version = "0.7.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5de893c32cde5f383baa4c04c5d6dbdd735cfd4a794b0debdb2bb1b421da5ff4" -dependencies = [ - "autocfg", -] - -[[package]] -name = "memoffset" version = "0.9.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "488016bfae457b036d996092f6cb448677611ce4449e970ceaf42695203f218a" @@ -1324,8 +1244,8 @@ checksum = "9bec4598fddb13cc7b528819e697852653252b760f1228b7642679bf2ff2cd07" [[package]] name = "mshv-bindings" -version = "0.1.1" -source = "git+https://github.com/rust-vmm/mshv?branch=main#fed467ffa4e910d37fc5cd0012f6d59f4a8009d8" +version = "0.2.0" +source = "git+https://github.com/rust-vmm/mshv?tag=v0.2.0#dd0a9f5ab9c32673e88d6de200af788dbfca6a72" dependencies = [ "libc", "num_enum", @@ -1337,8 +1257,8 @@ dependencies = [ [[package]] name = "mshv-ioctls" -version = "0.1.1" -source = "git+https://github.com/rust-vmm/mshv?branch=main#fed467ffa4e910d37fc5cd0012f6d59f4a8009d8" +version = "0.2.0" +source = "git+https://github.com/rust-vmm/mshv?tag=v0.2.0#dd0a9f5ab9c32673e88d6de200af788dbfca6a72" dependencies = [ "libc", "mshv-bindings", @@ -1387,14 +1307,15 @@ dependencies = [ [[package]] name = "nix" -version = "0.26.4" +version = "0.28.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "598beaf3cc6fdd9a5dfb1630c2800c7acd31df7aaf0f565796fba2b53ca1af1b" +checksum = "ab2156c4fce2f8df6c499cc1c763e4394b7482525bf2a9701c9d79d215f519e4" dependencies = [ - "bitflags 1.3.2", + "bitflags 2.5.0", "cfg-if", + "cfg_aliases", "libc", - "memoffset 0.7.1", + "memoffset", ] [[package]] @@ -1405,9 +1326,9 @@ checksum = "43794a0ace135be66a25d3ae77d41b91615fb68ae937f904090203e81f755b65" [[package]] name = "num-traits" -version = "0.2.18" +version = "0.2.19" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "da0df0e5185db44f69b44f26786fe401b6c293d1907744beaa7fa62b2e5a517a" +checksum = "071dfc062690e90b734c0b2273ce72ad0ffa95f0c74596bc250dcfd960262841" dependencies = [ "autocfg", ] @@ -1429,7 +1350,7 @@ checksum = "681030a937600a36906c185595136d26abfebb4aa9c65701cefcaf8578bb982b" dependencies = [ "proc-macro2", "quote", - "syn 2.0.58", + "syn 2.0.66", ] [[package]] @@ -1622,7 +1543,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "668d31b1c4eba19242f2088b2bf3316b82ca31082a8335764db4e083db7485d4" dependencies = [ "atomic-waker", - "fastrand 2.0.2", + "fastrand", "futures-io", ] @@ -1677,7 +1598,7 @@ dependencies = [ "proc-macro2", "quote", "regex", - "syn 2.0.58", + "syn 2.0.66", ] [[package]] @@ -1725,22 +1646,6 @@ dependencies = [ [[package]] name = "polling" -version = "2.8.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4b2d323e8ca7996b3e23126511a523f7e62924d93ecd5ae73b333815b0eb3dce" -dependencies = [ - "autocfg", - "bitflags 1.3.2", - "cfg-if", - "concurrent-queue", - "libc", - "log", - "pin-project-lite", - "windows-sys 0.48.0", -] - -[[package]] -name = "polling" version = "3.6.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "e0c976a60b2d7e99d6f229e414670a9b85d13ac305cc6d1e9c134de58c5aaaf6" @@ -1749,7 +1654,7 @@ dependencies = [ "concurrent-queue", "hermit-abi", "pin-project-lite", - "rustix 0.38.32", + "rustix", "tracing", "windows-sys 0.52.0", ] @@ -1762,28 +1667,27 @@ checksum = "5b40af805b3121feab8a3c29f04d8ad262fa8e0561883e7653e024ae4479e6de" [[package]] name = "proc-macro-crate" -version = "1.3.1" +version = "3.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7f4c021e1093a56626774e81216a4ce732a735e5bad4868a03f3ed65ca0c3919" +checksum = "6d37c51ca738a55da99dc0c4a34860fd675453b8b36209178c2249bb13651284" dependencies = [ - "once_cell", "toml_edit", ] [[package]] name = "proc-macro2" -version = "1.0.79" +version = "1.0.85" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e835ff2298f5721608eb1a980ecaee1aef2c132bf95ecc026a11b7bf3c01c02e" +checksum = "22244ce15aa966053a896d1accb3a6e68469b97c7f33f284b99f0d576879fc23" dependencies = [ "unicode-ident", ] [[package]] name = "quote" -version = "1.0.35" +version = "1.0.36" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "291ec9ab5efd934aaf503a6466c5d5251535d108ee747472c3977cc5acc868ef" +checksum = "0fa76aaf39101c457836aec0ce2316dbdc3ab723cdda1c6bd4e6ad4208acaca7" dependencies = [ "proc-macro2", ] @@ -1820,9 +1724,9 @@ dependencies = [ [[package]] name = "range_map_vec" -version = "0.1.0" +version = "0.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8edc89eaa583cf6bc4c6ef16a219f0a60d342ca3bf0eae793560038ac8af1795" +checksum = "7cc2191ec1fd850e3ede4cf09ccfd40a33df561111f73e96e1b7c3f9eee31328" [[package]] name = "rate_limiter" @@ -1878,9 +1782,9 @@ dependencies = [ [[package]] name = "regex-automata" -version = "0.4.6" +version = "0.4.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "86b83b8b9847f9bf95ef68afb0b8e6cdb80f498442f5179a29fad448fcc1eaea" +checksum = "38caf58cc5ef2fed281f89292ef23f6365465ed9a41b7a7754eb4e26496c92df" dependencies = [ "aho-corasick", "memchr", @@ -1901,14 +1805,14 @@ checksum = "ad9f2390298a947ee0aa6073d440e221c0726188cfbcdf9604addb6ee393eb4a" dependencies = [ "proc-macro2", "quote", - "syn 2.0.58", + "syn 2.0.66", ] [[package]] name = "rustc-demangle" -version = "0.1.23" +version = "0.1.24" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d626bb9dae77e28219937af045c257c28bfd3f69333c512553507f5f9798cb76" +checksum = "719b953e2095829ee67db738b3bfa9fa368c94900df327b3f07fe6e794d2fe1f" [[package]] name = "rustc-hash" @@ -1918,36 +1822,22 @@ checksum = "08d43f7aa6b08d49f382cde6a7982047c3426db949b1424bc4b7ec9ae12c6ce2" [[package]] name = "rustix" -version = "0.37.27" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fea8ca367a3a01fe35e6943c400addf443c0f57670e6ec51196f71a4b8762dd2" -dependencies = [ - "bitflags 1.3.2", - "errno", - "io-lifetimes", - "libc", - "linux-raw-sys 0.3.8", - "windows-sys 0.48.0", -] - -[[package]] -name = "rustix" -version = "0.38.32" +version = "0.38.34" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "65e04861e65f21776e67888bfbea442b3642beaa0138fdb1dd7a84a52dffdb89" +checksum = "70dc5ec042f7a43c4a73241207cecc9873a06d45debb38b329f8541d85c2730f" dependencies = [ "bitflags 2.5.0", "errno", "libc", - "linux-raw-sys 0.4.13", + "linux-raw-sys", "windows-sys 0.52.0", ] [[package]] name = "ryu" -version = "1.0.17" +version = "1.0.18" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e86697c916019a8588c99b5fac3cead74ec0b4b819707a682fd4d23fa0ce1ba1" +checksum = "f3cb5ba0dc43242ce17de99c180e96db90b235b8a9fdc9543c96d2209116bd9f" [[package]] name = "scopeguard" @@ -1966,22 +1856,22 @@ dependencies = [ [[package]] name = "serde" -version = "1.0.197" +version = "1.0.203" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3fb1c873e1b9b056a4dc4c0c198b24c3ffa059243875552b2bd0933b1aee4ce2" +checksum = "7253ab4de971e72fb7be983802300c30b5a7f0c2e56fab8abfc6a214307c0094" dependencies = [ "serde_derive", ] [[package]] name = "serde_derive" -version = "1.0.197" +version = "1.0.203" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7eb0b34b42edc17f6b7cac84a52a1c5f0e1bb2227e997ca9011ea3dd34e8610b" +checksum = "500cbc0ebeb6f46627f50f3f5811ccf6bf00643be300b4c3eabc0ef55dc5b5ba" dependencies = [ "proc-macro2", "quote", - "syn 2.0.58", + "syn 2.0.66", ] [[package]] @@ -2003,7 +1893,7 @@ checksum = "6c64451ba24fc7a6a2d60fc75dd9c83c90903b19028d4eff35e88fc1e86564e9" dependencies = [ "proc-macro2", "quote", - "syn 2.0.58", + "syn 2.0.66", ] [[package]] @@ -2026,7 +1916,7 @@ dependencies = [ "darling", "proc-macro2", "quote", - "syn 2.0.58", + "syn 2.0.66", ] [[package]] @@ -2079,16 +1969,6 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "3c5e1a9a646d36c3599cd173a41282daf47c44583ad367b8e6837255952e5c67" [[package]] -name = "socket2" -version = "0.4.10" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9f7916fc008ca5542385b89a3d3ce689953c143e9304a9bf8beec1de48994c0d" -dependencies = [ - "libc", - "winapi", -] - -[[package]] name = "spin" version = "0.9.8" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -2117,12 +1997,6 @@ checksum = "a2eb9349b6444b326872e140eb1cf5e7c522154d69e7a0ffb0fb81c06b37543f" [[package]] name = "strsim" -version = "0.10.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "73473c0e59e6d5812c5dfe2a064a6444949f089e20eec9a2e5506596494e4623" - -[[package]] -name = "strsim" version = "0.11.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "7da8b5736845d9f2fcb837ea5d9e2628564b3b043a70948a3f0b778838c5fb4f" @@ -2140,9 +2014,9 @@ dependencies = [ [[package]] name = "syn" -version = "2.0.58" +version = "2.0.66" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "44cfb93f38070beee36b3fef7d4f5a16f27751d94b187b666a5cc5e9b0d30687" +checksum = "c42f3f41a2de00b01c0aaad383c5a45241efc8b2d1eda5661812fda5f3cdcff5" dependencies = [ "proc-macro2", "quote", @@ -2156,8 +2030,8 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "85b77fafb263dd9d05cbeac119526425676db3784113aa9295c88498cbf8bff1" dependencies = [ "cfg-if", - "fastrand 2.0.2", - "rustix 0.38.32", + "fastrand", + "rustix", "windows-sys 0.52.0", ] @@ -2167,7 +2041,7 @@ version = "0.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "21bebf2b7c9e0a515f6e0f8c51dc0f8e4696391e6f1ff30379559f8365fb0df7" dependencies = [ - "rustix 0.38.32", + "rustix", "windows-sys 0.48.0", ] @@ -2188,22 +2062,22 @@ dependencies = [ [[package]] name = "thiserror" -version = "1.0.58" +version = "1.0.61" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "03468839009160513471e86a034bb2c5c0e4baae3b43f79ffc55c4a5427b3297" +checksum = "c546c80d6be4bc6a00c0f01730c08df82eaa7a7a61f11d656526506112cc1709" dependencies = [ "thiserror-impl", ] [[package]] name = "thiserror-impl" -version = "1.0.58" +version = "1.0.61" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c61f3ba182994efc43764a46c018c347bc492c79f024e705f46567b418f6d4f7" +checksum = "46c3384250002a6d5af4d114f2845d37b57521033f30d5c3f46c4d70e1197533" dependencies = [ "proc-macro2", "quote", - "syn 2.0.58", + "syn 2.0.66", ] [[package]] @@ -2220,9 +2094,9 @@ checksum = "3550f4e9685620ac18a50ed434eb3aec30db8ba93b0287467bca5826ea25baf1" [[package]] name = "toml_edit" -version = "0.19.15" +version = "0.21.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1b5bb770da30e5cbfde35a2d7b9b8a2c4b8ef89548a7a6aeab5c9a576e3e7421" +checksum = "6a8534fd7f78b5405e860340ad6575217ce99f38d4d5c8f2442cb5ecb50090e1" dependencies = [ "indexmap", "toml_datetime", @@ -2272,7 +2146,7 @@ checksum = "34704c8d6ebcbc939824180af020566b01a7c01f80641264eba0999f6c2b6be7" dependencies = [ "proc-macro2", "quote", - "syn 2.0.58", + "syn 2.0.66", ] [[package]] @@ -2296,7 +2170,7 @@ version = "1.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "89daebc3e6fd160ac4aa9fc8b3bf71e1f74fbf92367ae71fb83a037e8bf164b9" dependencies = [ - "memoffset 0.9.1", + "memoffset", "tempfile", "winapi", ] @@ -2337,7 +2211,7 @@ checksum = "49874b5167b65d7193b8aba1567f5c7d93d001cafc34600cee003eda787e483f" [[package]] name = "vfio-bindings" version = "0.4.0" -source = "git+https://github.com/rust-vmm/vfio?branch=main#da8c5b67095fb70f5ef237ca63d316219888f015" +source = "git+https://github.com/rust-vmm/vfio?branch=main#64171f3da1af7926adf162ecf545cb05fb9243c9" dependencies = [ "vmm-sys-util", ] @@ -2345,7 +2219,7 @@ dependencies = [ [[package]] name = "vfio-ioctls" version = "0.2.0" -source = "git+https://github.com/rust-vmm/vfio?branch=main#da8c5b67095fb70f5ef237ca63d316219888f015" +source = "git+https://github.com/rust-vmm/vfio?branch=main#64171f3da1af7926adf162ecf545cb05fb9243c9" dependencies = [ "byteorder", "kvm-bindings", @@ -2379,9 +2253,9 @@ dependencies = [ [[package]] name = "vhost" -version = "0.10.0" +version = "0.11.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2b64e816d0d49769fbfaa1494eb77cc2a3ddc526ead05c7f922cb7d64106286f" +checksum = "6be08d1166d41a78861ad50212ab3f9eca0729c349ac3a7a8f557c62406b87cc" dependencies = [ "bitflags 2.5.0", "libc", @@ -2391,9 +2265,9 @@ dependencies = [ [[package]] name = "vhost-user-backend" -version = "0.13.1" +version = "0.15.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "72c8c447d076ac508d78cb45664d203df7989e891656dce260a7e93d72352c9a" +checksum = "1f0ffb1dd8e00a708a0e2c32d5efec5812953819888591fff9ff68236b8a5096" dependencies = [ "libc", "log", @@ -2482,9 +2356,9 @@ dependencies = [ [[package]] name = "virtio-queue" -version = "0.11.0" +version = "0.12.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e3f69a13d6610db9312acbb438b0390362af905d37634a2106be70c0f734986d" +checksum = "07d8406e7250c934462de585d8f2d2781c31819bca1fbb7c5e964ca6bbaabfe8" dependencies = [ "log", "virtio-bindings", @@ -2565,6 +2439,7 @@ dependencies = [ "cfg-if", "clap", "devices", + "dhat", "epoll", "event_monitor", "flume", @@ -2630,12 +2505,6 @@ dependencies = [ ] [[package]] -name = "waker-fn" -version = "1.1.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f3c4517f54858c779bbcbf228f4fca63d121bf85fbecb2dc578cdf4a39395690" - -[[package]] name = "wasi" version = "0.11.0+wasi-snapshot-preview1" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -2662,7 +2531,7 @@ dependencies = [ "once_cell", "proc-macro2", "quote", - "syn 2.0.58", + "syn 2.0.66", "wasm-bindgen-shared", ] @@ -2684,7 +2553,7 @@ checksum = "e94f17b526d0a461a191c78ea52bbce64071ed5c04c9ffe424dcb38f74171bb7" dependencies = [ "proc-macro2", "quote", - "syn 2.0.58", + "syn 2.0.66", "wasm-bindgen-backend", "wasm-bindgen-shared", ] @@ -2870,30 +2739,28 @@ dependencies = [ [[package]] name = "zbus" -version = "3.15.2" +version = "4.1.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "675d170b632a6ad49804c8cf2105d7c31eddd3312555cffd4b740e08e97c25e6" +checksum = "c9ff46f2a25abd690ed072054733e0bc3157e3d4c45f41bd183dce09c2ff8ab9" dependencies = [ "async-broadcast", "async-executor", "async-fs", - "async-io 1.13.0", - "async-lock 2.8.0", + "async-io", + "async-lock", "async-process", "async-recursion", "async-task", "async-trait", "blocking", - "byteorder", "derivative", "enumflags2", - "event-listener 2.5.3", + "event-listener 5.3.0", "futures-core", "futures-sink", "futures-util", "hex", "nix", - "once_cell", "ordered-stream", "rand", "serde", @@ -2902,7 +2769,7 @@ dependencies = [ "static_assertions", "tracing", "uds_windows", - "winapi", + "windows-sys 0.52.0", "xdg-home", "zbus_macros", "zbus_names", @@ -2911,23 +2778,23 @@ dependencies = [ [[package]] name = "zbus_macros" -version = "3.15.2" +version = "4.1.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7131497b0f887e8061b430c530240063d33bf9455fa34438f388a245da69e0a5" +checksum = "4e0e3852c93dcdb49c9462afe67a2a468f7bd464150d866e861eaf06208633e0" dependencies = [ "proc-macro-crate", "proc-macro2", "quote", "regex", "syn 1.0.109", - "zvariant_utils", + "zvariant_utils 1.1.0", ] [[package]] name = "zbus_names" -version = "2.6.1" +version = "3.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "437d738d3750bed6ca9b8d423ccc7a8eb284f6b1d6d4e225a0e4e6258d864c8d" +checksum = "4b9b1fef7d021261cc16cba64c351d291b715febe0fa10dc3a443ac5a5022e6c" dependencies = [ "serde", "static_assertions", @@ -2952,18 +2819,17 @@ checksum = "9ce1b18ccd8e73a9321186f97e46f9f04b778851177567b1975109d26a08d2a6" dependencies = [ "proc-macro2", "quote", - "syn 2.0.58", + "syn 2.0.66", ] [[package]] name = "zvariant" -version = "3.15.2" +version = "4.1.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4eef2be88ba09b358d3b58aca6e41cd853631d44787f319a1383ca83424fb2db" +checksum = "9aa6d31a02fbfb602bfde791de7fedeb9c2c18115b3d00f3a36e489f46ffbbc7" dependencies = [ - "byteorder", + "endi", "enumflags2", - "libc", "serde", "static_assertions", "zvariant_derive", @@ -2971,24 +2837,35 @@ dependencies = [ [[package]] name = "zvariant_derive" -version = "3.15.2" +version = "4.1.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "37c24dc0bed72f5f90d1f8bb5b07228cbf63b3c6e9f82d82559d4bae666e7ed9" +checksum = "642bf1b6b6d527988b3e8193d20969d53700a36eac734d21ae6639db168701c8" dependencies = [ "proc-macro-crate", "proc-macro2", "quote", - "syn 1.0.109", - "zvariant_utils", + "syn 2.0.66", + "zvariant_utils 2.0.0", ] [[package]] name = "zvariant_utils" -version = "1.0.1" +version = "1.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7234f0d811589db492d16893e3f21e8e2fd282e6d01b0cddee310322062cc200" +checksum = "00bedb16a193cc12451873fee2a1bc6550225acece0e36f333e68326c73c8172" dependencies = [ "proc-macro2", "quote", "syn 1.0.109", ] + +[[package]] +name = "zvariant_utils" +version = "2.0.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "fc242db087efc22bd9ade7aa7809e4ba828132edc312871584a6b4391bdf8786" +dependencies = [ + "proc-macro2", + "quote", + "syn 2.0.66", +] diff --git a/pkgs/applications/virtualization/cloud-hypervisor/default.nix b/pkgs/applications/virtualization/cloud-hypervisor/default.nix index f48b5436f5c6b..c208ec8f92d9c 100644 --- a/pkgs/applications/virtualization/cloud-hypervisor/default.nix +++ b/pkgs/applications/virtualization/cloud-hypervisor/default.nix @@ -2,23 +2,22 @@ rustPlatform.buildRustPackage rec { pname = "cloud-hypervisor"; - version = "39.0"; + version = "40.0"; src = fetchFromGitHub { owner = "cloud-hypervisor"; repo = pname; rev = "v${version}"; - hash = "sha256-sMnfeICo/PhpljstTIj4CiE4QBuyVKYD9oWvWf0Ouew="; + hash = "sha256-zrMJGdbOukNbzmcTuIcHlwAbJvTzhz53dc4TO/Fplb4="; }; cargoLock = { lockFile = ./Cargo.lock; outputHashes = { "acpi_tables-0.1.0" = "sha256-a6ojB2XVeH+YzzXRle0agg+ljn0Jsgyaf6TJZAGt8sQ="; - "igvm-0.1.9" = "sha256-OztgRiv+//27MS9SqSBJPbrVlXihK2m9UkG4REZ9Vn0="; "micro_http-0.1.0" = "sha256-yIgcoEfc7eeS1+bijzkifaBxVNHa71Y+Vn79owMaKvM="; - "mshv-bindings-0.1.1" = "sha256-US/AzS7iRUQijkGs1EG04Hk4Q7dPz65BeTMsI8rtMqw="; - "vfio-bindings-0.4.0" = "sha256-k8Hf5y8MiTnd3k2iEgnnX/o8VdVS7prKlnssyEerVRM="; + "mshv-bindings-0.2.0" = "sha256-NYViItbjt1Q2G4yO3j37naHe9EJ+llkjrNt6w4zoiW8="; + "vfio-bindings-0.4.0" = "sha256-mzdYH23CVWm7fvu4+1cFHlPhkUjh7+JlU/ScoXaDNgA="; "vfio_user-0.1.0" = "sha256-LJ84k9pMkSAaWkuaUd+2LnPXnNgrP5LdbPOc1Yjz5xA="; "vm-fdt-0.3.0" = "sha256-9PywgSnSL+8gT6lcl9t6w7X4fEINa+db+H1vWS+gDOI="; }; diff --git a/pkgs/applications/virtualization/docker/compose.nix b/pkgs/applications/virtualization/docker/compose.nix index a5919f709971c..e5ce653f8b137 100644 --- a/pkgs/applications/virtualization/docker/compose.nix +++ b/pkgs/applications/virtualization/docker/compose.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "docker-compose"; - version = "2.27.1"; + version = "2.27.2"; src = fetchFromGitHub { owner = "docker"; repo = "compose"; rev = "v${version}"; - hash = "sha256-miAfEllN7/qDBD8UQZIfUeXSezEhmSwMo6oTDfiw2Bk="; + hash = "sha256-QwTn/oAfB1bJkPcI0oDGC4vp0xUQxjhF8+jZ+hqpr5Q="; }; postPatch = '' @@ -16,7 +16,7 @@ buildGoModule rec { rm -rf e2e/ ''; - vendorHash = "sha256-5HJ4qaPD1pbBFKgAArW0CKNBuP7pjxswZe3rHgjsgLg="; + vendorHash = "sha256-KczMkSwYP9Ng1dYUU7+ig2VRUEOPkaWTV77c9xGqbw0="; ldflags = [ "-X github.com/docker/compose/v2/internal.Version=${version}" "-s" "-w" ]; diff --git a/pkgs/applications/virtualization/docker/default.nix b/pkgs/applications/virtualization/docker/default.nix index aa040938ee7e0..3d096c3389f9d 100644 --- a/pkgs/applications/virtualization/docker/default.nix +++ b/pkgs/applications/virtualization/docker/default.nix @@ -10,7 +10,7 @@ rec { , tiniRev, tiniHash , buildxSupport ? true, composeSupport ? true, sbomSupport ? false # package dependencies - , stdenv, fetchFromGitHub, fetchpatch, buildGoPackage + , stdenv, fetchFromGitHub, fetchpatch, buildGoModule , makeWrapper, installShellFiles, pkg-config, glibc , go-md2man, go, containerd, runc, tini, libtool , sqlite, iproute2, docker-buildx, docker-compose, docker-sbom @@ -23,7 +23,7 @@ rec { , withSeccomp ? stdenv.isLinux, libseccomp }: let - docker-runc = runc.overrideAttrs (oldAttrs: { + docker-runc = runc.overrideAttrs { pname = "docker-runc"; inherit version; @@ -36,7 +36,7 @@ rec { # docker/runc already include these patches / are not applicable patches = []; - }); + }; docker-containerd = containerd.overrideAttrs (oldAttrs: { pname = "docker-containerd"; @@ -53,7 +53,7 @@ rec { ++ lib.optionals withSeccomp [ libseccomp ]; }); - docker-tini = tini.overrideAttrs (oldAttrs: { + docker-tini = tini.overrideAttrs { pname = "docker-init"; inherit version; @@ -70,7 +70,7 @@ rec { buildInputs = [ glibc glibc.static ]; env.NIX_CFLAGS_COMPILE = "-DMINIMAL=ON"; - }); + }; moby-src = fetchFromGitHub { owner = "moby"; @@ -79,13 +79,13 @@ rec { hash = mobyHash; }; - moby = buildGoPackage (lib.optionalAttrs stdenv.isLinux rec { + moby = buildGoModule (lib.optionalAttrs stdenv.isLinux rec { pname = "moby"; inherit version; src = moby-src; - goPackagePath = "github.com/docker/docker"; + vendorHash = null; nativeBuildInputs = [ makeWrapper pkg-config go-md2man go libtool installShellFiles ]; buildInputs = [ sqlite ] @@ -126,16 +126,13 @@ rec { buildPhase = '' export GOCACHE="$TMPDIR/go-cache" # build engine - cd ./go/src/${goPackagePath} export AUTO_GOPATH=1 export DOCKER_GITCOMMIT="${cliRev}" export VERSION="${version}" ./hack/make.sh dynbinary - cd - ''; installPhase = '' - cd ./go/src/${goPackagePath} install -Dm755 ./bundles/dynbinary-daemon/dockerd $out/libexec/docker/dockerd install -Dm755 ./bundles/dynbinary-daemon/docker-proxy $out/libexec/docker/docker-proxy @@ -149,7 +146,7 @@ rec { # systemd install -Dm644 ./contrib/init/systemd/docker.service $out/etc/systemd/system/docker.service - substituteInPlace $out/etc/systemd/system/docker.service --replace /usr/bin/dockerd $out/bin/dockerd + substituteInPlace $out/etc/systemd/system/docker.service --replace-fail /usr/bin/dockerd $out/bin/dockerd install -Dm644 ./contrib/init/systemd/docker.socket $out/etc/systemd/system/docker.socket # rootless Docker @@ -169,7 +166,7 @@ rec { ++ lib.optional sbomSupport docker-sbom; pluginsRef = symlinkJoin { name = "docker-plugins"; paths = plugins; }; in - buildGoPackage (lib.optionalAttrs (!clientOnly) { + buildGoModule (lib.optionalAttrs (!clientOnly) { # allow overrides of docker components # TODO: move packages out of the let...in into top-level to allow proper overrides inherit docker-runc docker-containerd docker-tini moby; @@ -184,7 +181,7 @@ rec { hash = cliHash; }; - goPackagePath = "github.com/docker/cli"; + vendorHash = null; nativeBuildInputs = [ makeWrapper pkg-config go-md2man go libtool installShellFiles @@ -197,9 +194,9 @@ rec { postPatch = '' patchShebangs man scripts/build/ - substituteInPlace ./scripts/build/.variables --replace "set -eu" "" + substituteInPlace ./scripts/build/.variables --replace-fail "set -eu" "" '' + lib.optionalString (plugins != []) '' - substituteInPlace ./cli-plugins/manager/manager_unix.go --replace /usr/libexec/docker/cli-plugins \ + substituteInPlace ./cli-plugins/manager/manager_unix.go --replace-fail /usr/libexec/docker/cli-plugins \ "${pluginsRef}/libexec/docker/cli-plugins" ''; @@ -207,7 +204,6 @@ rec { buildPhase = '' export GOCACHE="$TMPDIR/go-cache" - cd ./go/src/${goPackagePath} # Mimic AUTO_GOPATH mkdir -p .gopath/src/github.com/docker/ ln -sf $PWD .gopath/src/github.com/docker/cli @@ -215,17 +211,14 @@ rec { export GITCOMMIT="${cliRev}" export VERSION="${version}" export BUILDTIME="1970-01-01T00:00:00Z" - source ./scripts/build/.variables - export CGO_ENABLED=1 - go build -tags pkcs11 --ldflags "$GO_LDFLAGS" github.com/docker/cli/cmd/docker - cd - + make dynbinary + ''; outputs = ["out"] ++ lib.optional (lib.versionOlder version "23") "man"; installPhase = '' - cd ./go/src/${goPackagePath} - install -Dm755 ./docker $out/libexec/docker/docker + install -Dm755 ./build/docker $out/libexec/docker/docker makeWrapper $out/libexec/docker/docker $out/bin/docker \ --prefix PATH : "$out/libexec/docker:$extraPath" diff --git a/pkgs/applications/virtualization/docker/distribution.nix b/pkgs/applications/virtualization/docker/distribution.nix deleted file mode 100644 index 1a22aa0fafbff..0000000000000 --- a/pkgs/applications/virtualization/docker/distribution.nix +++ /dev/null @@ -1,23 +0,0 @@ -{ lib, buildGoPackage, fetchFromGitHub }: - -buildGoPackage rec { - pname = "distribution"; - version = "2.8.3"; - rev = "v${version}"; - - goPackagePath = "github.com/docker/distribution"; - - src = fetchFromGitHub { - owner = "docker"; - repo = "distribution"; - inherit rev; - sha256 = "sha256-6/clOTkI1JnDjb+crcHmjbQlaqffP/sntGqUB2ftajU="; - }; - - meta = with lib; { - description = "Docker toolset to pack, ship, store, and deliver content"; - license = licenses.asl20; - maintainers = []; - platforms = platforms.unix; - }; -} diff --git a/pkgs/applications/virtualization/kvmtool/default.nix b/pkgs/applications/virtualization/kvmtool/default.nix index ddcc24f3557dc..880334294af66 100644 --- a/pkgs/applications/virtualization/kvmtool/default.nix +++ b/pkgs/applications/virtualization/kvmtool/default.nix @@ -1,12 +1,13 @@ -{ stdenv, fetchzip, lib, dtc }: +{ stdenv, fetchgit, lib, dtc }: stdenv.mkDerivation { pname = "kvmtool"; - version = "unstable-2023-07-12"; + version = "0-unstable-2024-04-09"; - src = fetchzip { - url = "https://git.kernel.org/pub/scm/linux/kernel/git/will/kvmtool.git/snapshot/kvmtool-106e2ea7756d980454d68631b87d5e25ba4e4881.tar.gz"; - hash = "sha256-wpc5DfHnui0lBVH4uOq6a7pXVUZStjNLRvauu6QpRvE="; + src = fetchgit { + url = "https://git.kernel.org/pub/scm/linux/kernel/git/will/kvmtool.git"; + rev = "da4cfc3e540341b84c4bbad705b5a15865bc1f80"; + hash = "sha256-05tNsZauOXe1L1y1YchzvLZm3xOctPJhHCjyAyRnwy4="; }; patches = [ ./strlcpy-glibc-2.38-fix.patch ]; @@ -17,18 +18,17 @@ stdenv.mkDerivation { makeFlags = [ "prefix=${placeholder "out"}" + "CROSS_COMPILE=${stdenv.cc.targetPrefix}" + "ARCH=${stdenv.hostPlatform.linuxArch}" ] ++ lib.optionals stdenv.hostPlatform.isAarch64 ([ "LIBFDT_DIR=${dtc}/lib" - ] ++ lib.optionals (stdenv.buildPlatform != stdenv.hostPlatform) [ - "CROSS_COMPILE=aarch64-unknown-linux-gnu-" - "ARCH=arm64" ]); meta = with lib; { description = "Lightweight tool for hosting KVM guests"; homepage = "https://git.kernel.org/pub/scm/linux/kernel/git/will/kvmtool.git/tree/README"; license = licenses.gpl2Only; - maintainers = with maintainers; [ astro mfrw ]; + maintainers = with maintainers; [ astro mfrw peigongdsd ]; platforms = [ "x86_64-linux" "aarch64-linux" ]; mainProgram = "lkvm"; }; diff --git a/pkgs/applications/window-managers/hyprwm/hyprland-protocols/default.nix b/pkgs/applications/window-managers/hyprwm/hyprland-protocols/default.nix index 050c1c73d63c4..8815205b0e9d1 100644 --- a/pkgs/applications/window-managers/hyprwm/hyprland-protocols/default.nix +++ b/pkgs/applications/window-managers/hyprwm/hyprland-protocols/default.nix @@ -6,13 +6,13 @@ }: stdenv.mkDerivation (finalAttrs: { pname = "hyprland-protocols"; - version = "0.2"; + version = "0.3.0"; src = fetchFromGitHub { owner = "hyprwm"; repo = finalAttrs.pname; rev = "v${finalAttrs.version}"; - hash = "sha256-QPzwwlGKX95tl6ZEshboZbEwwAXww6lNLdVYd6T9Mrc="; + hash = "sha256-HUklK5u86w2Yh9dOkk4FdsL8eehcOZ95jPhLixGDRQY="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/window-managers/hyprwm/hyprpaper/default.nix b/pkgs/applications/window-managers/hyprwm/hyprpaper/default.nix index 508596d887830..9da143be08bf1 100644 --- a/pkgs/applications/window-managers/hyprwm/hyprpaper/default.nix +++ b/pkgs/applications/window-managers/hyprwm/hyprpaper/default.nix @@ -2,14 +2,24 @@ , stdenv , fetchFromGitHub , cmake +, cairo +, expat , file +, fribidi , hyprlang +, libdatrie , libGL , libjpeg +, libselinux +, libsepol +, libthai , libwebp -, mesa +, libXdmcp , pango +, pcre +, pcre2 , pkg-config +, util-linux , wayland , wayland-protocols , wayland-scanner @@ -33,13 +43,23 @@ stdenv.mkDerivation (finalAttrs: { ]; buildInputs = [ + cairo + expat file + fribidi hyprlang + libdatrie libGL libjpeg + libselinux + libsepol + libthai libwebp - mesa + libXdmcp pango + pcre + pcre2 + util-linux wayland wayland-protocols ]; @@ -49,18 +69,6 @@ stdenv.mkDerivation (finalAttrs: { --replace GIT_COMMIT_HASH '"${finalAttrs.src.rev}"' ''; - preConfigure = '' - make protocols - ''; - - installPhase = '' - runHook preInstall - - install -Dm755 ./hyprpaper -t $out/bin - - runHook postInstall - ''; - meta = with lib; { inherit (finalAttrs.src.meta) homepage; description = "Blazing fast wayland wallpaper utility"; diff --git a/pkgs/build-support/build-fhsenv-bubblewrap/buildFHSEnv.nix b/pkgs/build-support/build-fhsenv-bubblewrap/buildFHSEnv.nix index 1e34ad1e5e448..ffd19cfd4a8a0 100644 --- a/pkgs/build-support/build-fhsenv-bubblewrap/buildFHSEnv.nix +++ b/pkgs/build-support/build-fhsenv-bubblewrap/buildFHSEnv.nix @@ -116,6 +116,10 @@ let export PKG_CONFIG_PATH=/usr/lib/pkgconfig export ACLOCAL_PATH=/usr/share/aclocal + # GStreamer searches for plugins relative to its real binary's location + # https://gitlab.freedesktop.org/gstreamer/gstreamer/-/commit/bd97973ce0f2c5495bcda5cccd4f7ef7dcb7febc + export GST_PLUGIN_SYSTEM_PATH_1_0=/usr/lib/gstreamer-1.0:/usr/lib32/gstreamer-1.0 + ${profile} ''; diff --git a/pkgs/build-support/kernel/make-initrd-ng-tool.nix b/pkgs/build-support/kernel/make-initrd-ng-tool.nix index 5e08c091c0549..7ffa0bf6813a5 100644 --- a/pkgs/build-support/kernel/make-initrd-ng-tool.nix +++ b/pkgs/build-support/kernel/make-initrd-ng-tool.nix @@ -12,7 +12,7 @@ rustPlatform.buildRustPackage { meta = { description = "Tool for copying binaries and their dependencies"; mainProgram = "make-initrd-ng"; - maintainers = with lib.maintainers; [ das_j elvishjerricco k900 lheckemann ]; + maintainers = with lib.maintainers; [ das_j elvishjerricco k900 ]; license = lib.licenses.mit; }; } diff --git a/pkgs/build-support/ocaml/dune.nix b/pkgs/build-support/ocaml/dune.nix index 972244f80b0a4..e293605cb31d0 100644 --- a/pkgs/build-support/ocaml/dune.nix +++ b/pkgs/build-support/ocaml/dune.nix @@ -7,8 +7,7 @@ let Dune = { "1" = dune_1; "2" = dune_2; "3" = dune_3; }."${dune-version}" ; in -if (args ? minimumOCamlVersion && lib.versionOlder ocaml.version args.minimumOCamlVersion) || - (args ? minimalOCamlVersion && lib.versionOlder ocaml.version args.minimalOCamlVersion) +if args ? minimalOCamlVersion && lib.versionOlder ocaml.version args.minimalOCamlVersion then throw "${pname}-${version} is not available for OCaml ${ocaml.version}" else diff --git a/pkgs/build-support/rust/build-rust-crate/configure-crate.nix b/pkgs/build-support/rust/build-rust-crate/configure-crate.nix index 4077ee5ced8e4..ab872bac854f8 100644 --- a/pkgs/build-support/rust/build-rust-crate/configure-crate.nix +++ b/pkgs/build-support/rust/build-rust-crate/configure-crate.nix @@ -198,13 +198,16 @@ in '' ) set +e - EXTRA_BUILD=$(sed -n "s/^cargo:rustc-flags=\(.*\)/\1/p" target/build/${crateName}.opt | tr '\n' ' ' | sort -u) - EXTRA_FEATURES=$(sed -n "s/^cargo:rustc-cfg=\(.*\)/--cfg \1/p" target/build/${crateName}.opt | tr '\n' ' ') - EXTRA_LINK_ARGS=$(sed -n "s/^cargo:rustc-link-arg=\(.*\)/-C link-arg=\1/p" target/build/${crateName}.opt | tr '\n' ' ') - EXTRA_LINK_ARGS_BINS=$(sed -n "s/^cargo:rustc-link-arg-bins=\(.*\)/-C link-arg=\1/p" target/build/${crateName}.opt | tr '\n' ' ') - EXTRA_LINK_ARGS_LIB=$(sed -n "s/^cargo:rustc-link-arg-lib=\(.*\)/-C link-arg=\1/p" target/build/${crateName}.opt | tr '\n' ' ') - EXTRA_LINK_LIBS=$(sed -n "s/^cargo:rustc-link-lib=\(.*\)/\1/p" target/build/${crateName}.opt | tr '\n' ' ') - EXTRA_LINK_SEARCH=$(sed -n "s/^cargo:rustc-link-search=\(.*\)/\1/p" target/build/${crateName}.opt | tr '\n' ' ' | sort -u) + # We want to support the new prefix invocation syntax which uses two colons + # See https://doc.rust-lang.org/cargo/reference/build-scripts.html#outputs-of-the-build-script + + EXTRA_BUILD=$(sed -n "s/^cargo::\{0,1\}rustc-flags=\(.*\)/\1/p" target/build/${crateName}.opt | tr '\n' ' ' | sort -u) + EXTRA_FEATURES=$(sed -n "s/^cargo::\{0,1\}rustc-cfg=\(.*\)/--cfg \1/p" target/build/${crateName}.opt | tr '\n' ' ') + EXTRA_LINK_ARGS=$(sed -n "s/^cargo::\{0,1\}rustc-link-arg=\(.*\)/-C link-arg=\1/p" target/build/${crateName}.opt | tr '\n' ' ') + EXTRA_LINK_ARGS_BINS=$(sed -n "s/^cargo::\{0,1\}rustc-link-arg-bins=\(.*\)/-C link-arg=\1/p" target/build/${crateName}.opt | tr '\n' ' ') + EXTRA_LINK_ARGS_LIB=$(sed -n "s/^cargo::\{0,1\}rustc-link-arg-lib=\(.*\)/-C link-arg=\1/p" target/build/${crateName}.opt | tr '\n' ' ') + EXTRA_LINK_LIBS=$(sed -n "s/^cargo::\{0,1\}rustc-link-lib=\(.*\)/\1/p" target/build/${crateName}.opt | tr '\n' ' ') + EXTRA_LINK_SEARCH=$(sed -n "s/^cargo::\{0,1\}rustc-link-search=\(.*\)/\1/p" target/build/${crateName}.opt | tr '\n' ' ' | sort -u) # We want to read part of every line that has cargo:rustc-env= prefix and # export it as environment variables. This turns out tricky if the lines @@ -217,14 +220,15 @@ in '' # _OLDIFS="$IFS" IFS=$'\n' - for env in $(sed -n "s/^cargo:rustc-env=\(.*\)/\1/p" target/build/${crateName}.opt); do + for env in $(sed -n "s/^cargo::\{0,1\}rustc-env=\(.*\)/\1/p" target/build/${crateName}.opt); do export "$env" done IFS="$_OLDIFS" CRATENAME=$(echo ${crateName} | sed -e "s/\(.*\)-sys$/\U\1/" -e "s/-/_/g") - grep -P "^cargo:(?!(rustc-|warning=|rerun-if-changed=|rerun-if-env-changed))" target/build/${crateName}.opt \ - | awk -F= "/^cargo:/ { sub(/^cargo:/, \"\", \$1); gsub(/-/, \"_\", \$1); print \"export \" toupper(\"DEP_$(echo $CRATENAME)_\" \$1) \"=\" \"\\\"\"\$2\"\\\"\" }" > target/env + grep -P "^cargo:(?!:?(rustc-|warning=|rerun-if-changed=|rerun-if-env-changed))" target/build/${crateName}.opt \ + | awk -F= "/^cargo::metadata=/ { gsub(/-/, \"_\", \$2); print \"export \" toupper(\"DEP_$(echo $CRATENAME)_\" \$2) \"=\" \"\\\"\"\$3\"\\\"\"; next } + /^cargo:/ { sub(/^cargo::?/, \"\", \$1); gsub(/-/, \"_\", \$1); print \"export \" toupper(\"DEP_$(echo $CRATENAME)_\" \$1) \"=\" \"\\\"\"\$2\"\\\"\"; next }" > target/env set -e fi runHook postConfigure diff --git a/pkgs/build-support/rust/build-rust-crate/default.nix b/pkgs/build-support/rust/build-rust-crate/default.nix index 9ceda041b6653..dfe28cc334b5e 100644 --- a/pkgs/build-support/rust/build-rust-crate/default.nix +++ b/pkgs/build-support/rust/build-rust-crate/default.nix @@ -49,6 +49,8 @@ let filename = if lib.any (x: x == "lib" || x == "rlib") dep.crateType then "${dep.metadata}.rlib" + # Adjust lib filename for crates of type proc-macro. Proc macros are compiled/run on the build platform architecture. + else if (lib.attrByPath [ "procMacro" ] false dep) then "${dep.metadata}${stdenv.buildPlatform.extensions.library}" else "${dep.metadata}${stdenv.hostPlatform.extensions.library}"; in " --extern ${opts}${name}=${dep.lib}/lib/lib${extern}-${filename}" diff --git a/pkgs/build-support/rust/build-rust-crate/test/default.nix b/pkgs/build-support/rust/build-rust-crate/test/default.nix index 522eedfede7f2..d020031a92f93 100644 --- a/pkgs/build-support/rust/build-rust-crate/test/default.nix +++ b/pkgs/build-support/rust/build-rust-crate/test/default.nix @@ -421,6 +421,53 @@ let buildDependencies = [ depCrate ]; dependencies = [ depCrate ]; }; + # Support new invocation prefix for build scripts `cargo::` + # https://doc.rust-lang.org/cargo/reference/build-scripts.html#outputs-of-the-build-script + buildScriptInvocationPrefix = let + depCrate = buildRustCrate: mkCrate buildRustCrate { + crateName = "bar"; + src = mkFile "build.rs" '' + fn main() { + // Old invocation prefix + // We likely won't see be mixing these syntaxes in the same build script in the wild. + println!("cargo:key_old=value_old"); + + // New invocation prefix + println!("cargo::metadata=key=value"); + println!("cargo::metadata=key_complex=complex(value)"); + } + ''; + }; + in { + crateName = "foo"; + src = symlinkJoin { + name = "build-script-and-main-invocation-prefix"; + paths = [ + (mkFile "src/main.rs" '' + const BUILDFOO: &'static str = env!("BUILDFOO"); + + #[test] + fn build_foo_check() { assert!(BUILDFOO == "yes(check)"); } + + fn main() { } + '') + (mkFile "build.rs" '' + use std::env; + fn main() { + assert!(env::var_os("DEP_BAR_KEY_OLD").expect("metadata key 'key_old' not set in dependency") == "value_old"); + assert!(env::var_os("DEP_BAR_KEY").expect("metadata key 'key' not set in dependency") == "value"); + assert!(env::var_os("DEP_BAR_KEY_COMPLEX").expect("metadata key 'key_complex' not set in dependency") == "complex(value)"); + + println!("cargo::rustc-env=BUILDFOO=yes(check)"); + } + '') + ]; + }; + buildDependencies = [ (depCrate buildPackages.buildRustCrate) ]; + dependencies = [ (depCrate buildRustCrate) ]; + buildTests = true; + expectedTestOutputs = [ "test build_foo_check ... ok" ]; + }; # Regression test for https://github.com/NixOS/nixpkgs/issues/74071 # Whenevever a build.rs file is generating files those should not be overlayed onto the actual source dir buildRsOutDirOverlay = { diff --git a/pkgs/build-support/rust/default-crate-overrides.nix b/pkgs/build-support/rust/default-crate-overrides.nix index 92c71dfc059ce..d8f1bfaf4447b 100644 --- a/pkgs/build-support/rust/default-crate-overrides.nix +++ b/pkgs/build-support/rust/default-crate-overrides.nix @@ -218,6 +218,10 @@ in buildInputs = [ openssl ]; }; + opentelemetry-proto = attrs: { + nativeBuildInputs = [ protobuf ]; + }; + pam-sys = attr: { buildInputs = [ linux-pam ]; }; @@ -236,6 +240,10 @@ in nativeBuildInputs = [ protobuf ]; }; + prost-wkt-types = attr: { + nativeBuildInputs = [ protobuf ]; + }; + rdkafka-sys = attr: { nativeBuildInputs = [ pkg-config ]; buildInputs = [ rdkafka ]; @@ -299,6 +307,10 @@ in buildInputs = [ libsodium ]; }; + tonic-reflection = attrs: { + nativeBuildInputs = [ protobuf ]; + }; + xcb = attrs: { buildInputs = [ python3 ]; }; diff --git a/pkgs/build-support/trivial-builders/test/references/default.nix b/pkgs/build-support/trivial-builders/test/references/default.nix index 928cc1d9461f0..85df57ea210c2 100644 --- a/pkgs/build-support/trivial-builders/test/references/default.nix +++ b/pkgs/build-support/trivial-builders/test/references/default.nix @@ -93,21 +93,27 @@ let }; }); in -testers.nixosTest { - name = "nixpkgs-trivial-builders"; - nodes.machine = { ... }: { +testers.runNixOSTest ({ config, lib, ... }: +let + # Use the testScriptBin from guest pkgs. + # The attribute path to access the guest version of testScriptBin is + # tests.trivial-builders.references.config.node.pkgs.tests.trivial-builders.references.testScriptBin + # which is why passthru.guestTestScriptBin is provided. + guestTestScriptBin = config.node.pkgs.tests.trivial-builders.references.testScriptBin; +in +{ + name = "nixpkgs-trivial-builders-references"; + nodes.machine = { config, lib, pkgs, ... }: { virtualisation.writableStore = true; # Test runs without network, so we don't substitute and prepare our deps nix.settings.substituters = lib.mkForce [ ]; - environment.etc."pre-built-paths".source = writeText "pre-built-paths" ( - builtins.toJSON [ testScriptBin ] - ); + system.extraDependencies = [ guestTestScriptBin ]; }; testScript = '' machine.succeed(""" - ${lib.getExe testScriptBin} 2>/dev/console + ${lib.getExe guestTestScriptBin} 2>/dev/console """) ''; passthru = { @@ -118,6 +124,7 @@ testers.nixosTest { samples testScriptBin ; + inherit guestTestScriptBin; }; meta = { maintainers = with lib.maintainers; [ @@ -125,4 +132,4 @@ testers.nixosTest { ShamrockLee ]; }; -} +}) diff --git a/pkgs/by-name/an/ananicy-cpp/match-wrappers.patch b/pkgs/by-name/an/ananicy-cpp/match-wrappers.patch new file mode 100644 index 0000000000000..3b352925e2710 --- /dev/null +++ b/pkgs/by-name/an/ananicy-cpp/match-wrappers.patch @@ -0,0 +1,16 @@ +diff --git a/src/worker.cpp b/src/worker.cpp +index 0cf8955..b9dc70f 100644 +--- a/src/worker.cpp ++++ b/src/worker.cpp +@@ -29,7 +29,10 @@ void Worker::work(const std::stop_token &stop_token) { + while (!stop_token.stop_requested()) { + while ((proc = process_queue->poll(500ms)).has_value()) { + const auto &p = proc.value(); +- const auto &rule = rules->get_rule(p.name); ++ auto name = p.name; ++ if (name.starts_with('.') && name.ends_with("-wrapped")) ++ name = name.substr(1, name.find_last_of('-') - 1); ++ const auto &rule = rules->get_rule(name); + + processed_count++; + diff --git a/pkgs/by-name/an/ananicy-cpp/package.nix b/pkgs/by-name/an/ananicy-cpp/package.nix index 8d3416f69c57c..a17e199a5ca71 100644 --- a/pkgs/by-name/an/ananicy-cpp/package.nix +++ b/pkgs/by-name/an/ananicy-cpp/package.nix @@ -33,6 +33,7 @@ clangStdenv.mkDerivation rec { url = "https://gitlab.com/ananicy-cpp/ananicy-cpp/-/commit/6ea2dccceec39b6c4913f617dad81d859aa20f24.patch"; hash = "sha256-C+7x/VpVwewXEPwibi7GxGfjuhDkhcjTyGbZHlYL2Bs="; }) + ./match-wrappers.patch ]; strictDeps = true; @@ -80,6 +81,7 @@ clangStdenv.mkDerivation rec { maintainers = with lib.maintainers; [ artturin johnrtitor + diniamo ]; mainProgram = "ananicy-cpp"; }; diff --git a/pkgs/by-name/ar/arc-browser/package.nix b/pkgs/by-name/ar/arc-browser/package.nix index a4b1b5fcb89fa..65a323f684fd4 100644 --- a/pkgs/by-name/ar/arc-browser/package.nix +++ b/pkgs/by-name/ar/arc-browser/package.nix @@ -9,11 +9,11 @@ stdenvNoCC.mkDerivation (finalAttrs: { pname = "arc-browser"; - version = "1.46.0-50665"; + version = "1.47.1-50893"; src = fetchurl { url = "https://releases.arc.net/release/Arc-${finalAttrs.version}.dmg"; - hash = "sha256-k1guZWLeA9obSYRPSKObGhYYjRKxPBQ0wtAGSU2REjA="; + hash = "sha256-BiEJDs5cHXkmfT9omxG7uk/6zXdOa/69Zn/Y0HqclQc="; }; nativeBuildInputs = [ undmg ]; diff --git a/pkgs/by-name/ar/ardugotools/package.nix b/pkgs/by-name/ar/ardugotools/package.nix new file mode 100644 index 0000000000000..3e6604320786e --- /dev/null +++ b/pkgs/by-name/ar/ardugotools/package.nix @@ -0,0 +1,31 @@ +{ + lib, + buildGoModule, + fetchFromGitHub, + ... +}: +let + version = "0.5.2"; +in +buildGoModule { + pname = "ardugotools"; + inherit version; + + src = fetchFromGitHub { + owner = "randomouscrap98"; + repo = "ardugotools"; + rev = "refs/tags/v${version}"; + hash = "sha256-ugYkcYrVHoGC58u6zQNEjlWspAFONmEQVnVDWdWeVnw="; + }; + + vendorHash = "sha256-Z9ObsS+GwVsz6ZlXCgN0WlShHzbmx4WLa/1/XLSSAAs="; + + meta = { + description = "CLI toolset for Arduboy"; + changelog = "https://github.com/randomouscrap98/ardugotools/releases/tag/v${version}"; + homepage = "https://github.com/randomouscrap98/ardugotools"; + license = lib.licenses.mit; + maintainers = with lib.maintainers; [ luftmensch-luftmensch ]; + mainProgram = "ardugotools"; + }; +} diff --git a/pkgs/by-name/ar/arkenfox-userjs/package.nix b/pkgs/by-name/ar/arkenfox-userjs/package.nix new file mode 100644 index 0000000000000..04ac83fce1a66 --- /dev/null +++ b/pkgs/by-name/ar/arkenfox-userjs/package.nix @@ -0,0 +1,41 @@ +{ + lib, + fetchurl, + stdenvNoCC, + nix-update-script, +}: +stdenvNoCC.mkDerivation (finalAttrs: { + pname = "arkenfox-userjs"; + version = "126.1"; + + src = fetchurl { + url = "https://raw.githubusercontent.com/arkenfox/user.js/${finalAttrs.version}/user.js"; + hash = "sha256-XRtG0iLKh8uqbeX7Rc2H6VJwZYJoNZPBlAfZEfrSCP4="; + }; + + dontUnpack = true; + + installPhase = '' + runHook preInstall + + install -Dm644 $src $out/user.js + install -Dm644 $src $out/user.cfg + substituteInPlace $out/user.cfg \ + --replace-fail "user_pref" "defaultPref" + + runHook postInstall + ''; + + passthru.updateScript = nix-update-script { }; + + meta = { + description = "A comprehensive user.js template for configuration and hardening"; + homepage = "https://github.com/arkenfox/user.js"; + license = lib.licenses.mit; + maintainers = with lib.maintainers; [ + linsui + Guanran928 + ]; + platforms = lib.platforms.all; + }; +}) diff --git a/pkgs/by-name/at/atuin/package.nix b/pkgs/by-name/at/atuin/package.nix index 4407eb5e11dbc..9234e8866752e 100644 --- a/pkgs/by-name/at/atuin/package.nix +++ b/pkgs/by-name/at/atuin/package.nix @@ -4,7 +4,7 @@ , installShellFiles , rustPlatform , libiconv -, protobuf +, buildPackages , darwin , nixosTests }: @@ -35,9 +35,7 @@ rustPlatform.buildRustPackage rec { nativeBuildInputs = [ installShellFiles ]; - buildInputs = [ - protobuf - ] ++ lib.optionals stdenv.isDarwin [ + buildInputs = lib.optionals stdenv.isDarwin [ libiconv darwin.apple_sdk_11_0.frameworks.AppKit darwin.apple_sdk_11_0.frameworks.Security @@ -45,8 +43,8 @@ rustPlatform.buildRustPackage rec { ]; preBuild = '' - export PROTOC=${protobuf}/bin/protoc - export PROTOC_INCLUDE="${protobuf}/include"; + export PROTOC=${buildPackages.protobuf}/bin/protoc + export PROTOC_INCLUDE="${buildPackages.protobuf}/include"; ''; postInstall = lib.optionalString (stdenv.buildPlatform.canExecute stdenv.hostPlatform) '' diff --git a/pkgs/by-name/bi/bitwarden-cli/package.nix b/pkgs/by-name/bi/bitwarden-cli/package.nix index 1fc02d5cc1d59..14a076c96078c 100644 --- a/pkgs/by-name/bi/bitwarden-cli/package.nix +++ b/pkgs/by-name/bi/bitwarden-cli/package.nix @@ -1,7 +1,7 @@ { lib , stdenv , buildNpmPackage -, nodejs_18 +, nodejs_20 , fetchFromGitHub , python3 , darwin @@ -10,18 +10,18 @@ buildNpmPackage rec { pname = "bitwarden-cli"; - version = "2024.4.1"; + version = "2024.6.0"; src = fetchFromGitHub { owner = "bitwarden"; repo = "clients"; rev = "cli-v${version}"; - hash = "sha256-Dz7EActqXd97kNxEaNINj2O6TLZWEgHHg1lOIa2+Lt4="; + hash = "sha256-qiUUrs23WHE3+KFsWDknuDSA6M3Zwjz9Jdjq6mn5XkE="; }; - nodejs = nodejs_18; + nodejs = nodejs_20; - npmDepsHash = "sha256-fjYez3nSDsG5kYtrun3CkDCz1GNAjNlwPzEL+/9qQRU="; + npmDepsHash = "sha256-Mgd15eFJtWoBqFFCsjmsnlNbcg5NDs1U7DlMkE0hIb8="; nativeBuildInputs = [ python3 @@ -33,7 +33,7 @@ buildNpmPackage rec { env.ELECTRON_SKIP_BINARY_DOWNLOAD = "1"; - npmBuildScript = "build:prod"; + npmBuildScript = "build:oss:prod"; npmWorkspace = "apps/cli"; diff --git a/pkgs/by-name/bi/bitwarden-desktop/package.nix b/pkgs/by-name/bi/bitwarden-desktop/package.nix index f10ef5d4178b6..ca6c93cac7b57 100644 --- a/pkgs/by-name/bi/bitwarden-desktop/package.nix +++ b/pkgs/by-name/bi/bitwarden-desktop/package.nix @@ -192,7 +192,7 @@ in buildNpmPackage rec { inherit description; homepage = "https://bitwarden.com"; license = lib.licenses.gpl3; - maintainers = with lib.maintainers; [ amarshall kiwi ]; + maintainers = with lib.maintainers; [ amarshall ]; platforms = [ "x86_64-linux" ]; mainProgram = "bitwarden"; }; diff --git a/pkgs/by-name/bl/blockbench/package.nix b/pkgs/by-name/bl/blockbench/package.nix index 9cf8cac46c72c..5f5f7da0f31da 100644 --- a/pkgs/by-name/bl/blockbench/package.nix +++ b/pkgs/by-name/bl/blockbench/package.nix @@ -7,11 +7,10 @@ imagemagick, copyDesktopItems, makeDesktopItem, - electron_28, + electron }: let - electron = electron_28; electronDist = "${electron}/${if stdenv.isDarwin then "Applications" else "libexec/electron"}"; in buildNpmPackage rec { diff --git a/pkgs/by-name/ca/caligula/package.nix b/pkgs/by-name/ca/caligula/package.nix index fde66f9607f5e..6cb36421eaae5 100644 --- a/pkgs/by-name/ca/caligula/package.nix +++ b/pkgs/by-name/ca/caligula/package.nix @@ -1,6 +1,7 @@ { lib , rustPlatform , fetchFromGitHub +, llvmPackages , stdenv , darwin }: @@ -18,6 +19,11 @@ rustPlatform.buildRustPackage rec { cargoHash = "sha256-ma7JVbWSiKfkCXCDwA8DFm2+KPrWR+8nSdgGSqehNg8="; + env = { + LIBCLANG_PATH = "${llvmPackages.libclang.lib}/lib"; + }; + + buildInputs = lib.optionals stdenv.isDarwin ( with darwin.apple_sdk.frameworks; [ Cocoa @@ -35,8 +41,6 @@ rustPlatform.buildRustPackage rec { license = licenses.gpl3Only; maintainers = with maintainers; [ ifd3f sodiboo ]; platforms = platforms.linux ++ platforms.darwin; - # https://github.com/ifd3f/caligula/issues/105 - broken = stdenv.hostPlatform.isDarwin; mainProgram = "caligula"; }; } diff --git a/pkgs/by-name/ca/cargo-i18n/package.nix b/pkgs/by-name/ca/cargo-i18n/package.nix index 158d22f97b03a..43b353ed4d495 100644 --- a/pkgs/by-name/ca/cargo-i18n/package.nix +++ b/pkgs/by-name/ca/cargo-i18n/package.nix @@ -7,16 +7,16 @@ rustPlatform.buildRustPackage rec { pname = "cargo-i18n"; - version = "0.2.12"; + version = "0.2.13"; src = fetchFromGitHub { owner = "kellpossible"; repo = "cargo-i18n"; rev = "v${version}"; - hash = "sha256-ck0GYy9DLngOunpItGQ4+qrlzaWDk0zTnIzuRQt2/Gw="; + hash = "sha256-azwQlXsoCgNB/TjSBBE+taUR1POBJXaPnS5Sr+HVR90="; }; - cargoHash = "sha256-nvZx2wJDs7PZQLCl8Hrf2blR+lNUBVr6k664VSVQ5iI="; + cargoHash = "sha256-vN62QmCuhu7AjL6xSpBU6/ul4WgNLZbjWDCFyHj6rIM="; buildInputs = lib.optionals stdenv.isDarwin [ darwin.apple_sdk.frameworks.Foundation diff --git a/pkgs/by-name/ca/catppuccin-fcitx5/package.nix b/pkgs/by-name/ca/catppuccin-fcitx5/package.nix index 879b14960b2a5..475171ad2cf97 100644 --- a/pkgs/by-name/ca/catppuccin-fcitx5/package.nix +++ b/pkgs/by-name/ca/catppuccin-fcitx5/package.nix @@ -2,6 +2,7 @@ lib, stdenvNoCC, fetchFromGitHub, + unstableGitUpdater, }: stdenvNoCC.mkDerivation { pname = "catppuccin-fcitx5"; @@ -14,6 +15,9 @@ stdenvNoCC.mkDerivation { hash = "sha256-uFaCbyrEjv4oiKUzLVFzw+UY54/h7wh2cntqeyYwGps="; }; + dontConfigure = true; + dontBuild = true; + installPhase = '' runHook preInstall mkdir -p $out/share/fcitx5 @@ -21,11 +25,13 @@ stdenvNoCC.mkDerivation { runHook postInstall ''; + passthru.updateScript = unstableGitUpdater { }; + meta = { description = "Soothing pastel theme for Fcitx5"; homepage = "https://github.com/catppuccin/fcitx5"; license = lib.licenses.mit; - maintainers = with lib.maintainers; [ pluiedev ]; + maintainers = with lib.maintainers; [ pluiedev Guanran928 ]; platforms = lib.platforms.all; }; } diff --git a/pkgs/by-name/ca/catppuccin-grub/package.nix b/pkgs/by-name/ca/catppuccin-grub/package.nix new file mode 100644 index 0000000000000..7c3a16348e9b6 --- /dev/null +++ b/pkgs/by-name/ca/catppuccin-grub/package.nix @@ -0,0 +1,37 @@ +{ + lib, + stdenvNoCC, + fetchFromGitHub, + flavor ? "mocha", # override with your chosen flavor +}: +let + version = "1.0.0"; +in +stdenvNoCC.mkDerivation { + pname = "catppuccin-grub"; + inherit version; + + src = fetchFromGitHub { + owner = "catppuccin"; + repo = "grub"; + rev = "v${version}"; + hash = "sha256-/bSolCta8GCZ4lP0u5NVqYQ9Y3ZooYCNdTwORNvR7M0="; + }; + + installPhase = '' + runHook preInstall + + mkdir -p $out/ + cp -r src/catppuccin-${flavor}-grub-theme/* "$out/" + + runHook postInstall + ''; + + meta = { + description = "Soothing pastel theme for GRUB"; + homepage = "https://github.com/catppuccin/grub"; + license = lib.licenses.mit; + maintainers = with lib.maintainers; [isabelroses mimvoid]; + platforms = lib.platforms.linux; + }; +} diff --git a/pkgs/by-name/ca/catppuccin-gtk/package.nix b/pkgs/by-name/ca/catppuccin-gtk/package.nix index 5bc1ffbcecaba..db7a3295903b7 100644 --- a/pkgs/by-name/ca/catppuccin-gtk/package.nix +++ b/pkgs/by-name/ca/catppuccin-gtk/package.nix @@ -3,7 +3,6 @@ , fetchFromGitHub , gtk3 , git -, colloid-gtk-theme , python3 , sassc , nix-update-script @@ -34,7 +33,8 @@ stdenvNoCC.mkDerivation { owner = "catppuccin"; repo = "gtk"; rev = "v${version}"; - hash = "sha256-8KyZtZqVVz5UKuGdLrUsR2djD3nsJDliHMtvFtUVim8="; + fetchSubmodules = true; + hash = "sha256-q5/VcFsm3vNEw55zq/vcM11eo456SYE5TQA3g2VQjGc="; }; nativeBuildInputs = [ @@ -46,12 +46,6 @@ stdenvNoCC.mkDerivation { (python3.withPackages (ps: [ ps.catppuccin ])) ]; - postUnpack = '' - rm -rf source/sources/colloid - cp -r ${colloid-gtk-theme.src} source/sources/colloid - chmod -R +w source/sources/colloid - ''; - dontConfigure = true; dontBuild = true; diff --git a/pkgs/by-name/cd/cdk/package.nix b/pkgs/by-name/cd/cdk/package.nix index 9848f293a011b..2d4968e5ce587 100644 --- a/pkgs/by-name/cd/cdk/package.nix +++ b/pkgs/by-name/cd/cdk/package.nix @@ -6,11 +6,11 @@ stdenv.mkDerivation (finalAttrs: { pname = "cdk"; - version = "5.0-20230201"; + version = "5.0-20240619"; src = fetchurl { url = "https://invisible-mirror.net/archives/cdk/cdk-${finalAttrs.version}.tgz"; - hash = "sha256-oxJ7Wf5QX16Jjao90VsM9yShJ0zmgWW3eb4vKdTE8vY="; + hash = "sha256-Q28U6KdW5j3f9ZJ+73DJ3PceTFnVZYfiYwKk9yahnv8="; }; buildInputs = [ diff --git a/pkgs/by-name/ch/charmcraft/package.nix b/pkgs/by-name/ch/charmcraft/package.nix index c837563a61c8b..a78fb1c3557fd 100644 --- a/pkgs/by-name/ch/charmcraft/package.nix +++ b/pkgs/by-name/ch/charmcraft/package.nix @@ -8,7 +8,7 @@ python3Packages.buildPythonApplication rec { pname = "charmcraft"; - version = "2.6.0"; + version = "2.7.0"; pyproject = true; @@ -16,7 +16,7 @@ python3Packages.buildPythonApplication rec { owner = "canonical"; repo = "charmcraft"; rev = "refs/tags/${version}"; - hash = "sha256-B0ZcOORW6yaSIpisPLnq5/S/CcqqvHNTXcfP1sKW2KQ="; + hash = "sha256-yMcGXi7OxEtfOv3zLEUlnZrR90TkFc0y9RB9jS34ZWs="; }; postPatch = '' diff --git a/pkgs/by-name/cl/clang-uml/package.nix b/pkgs/by-name/cl/clang-uml/package.nix index e18937a71b548..9c037fb30be60 100644 --- a/pkgs/by-name/cl/clang-uml/package.nix +++ b/pkgs/by-name/cl/clang-uml/package.nix @@ -17,13 +17,13 @@ }: stdenv.mkDerivation (finalAttrs: { pname = "clang-uml"; - version = "0.5.2"; + version = "0.5.3"; src = fetchFromGitHub { owner = "bkryza"; repo = "clang-uml"; rev = finalAttrs.version; - hash = "sha256-ZVaMLsI1FK05xFfMmlLBPop7DR3fDstnfgjdBmsjNBA="; + hash = "sha256-ghnbOjVYw0zdFK/SDJ3sOObu6I7ROVNzYl1hovWju/Q="; }; nativeBuildInputs = [ diff --git a/pkgs/development/tools/misc/clojure-lsp/default.nix b/pkgs/by-name/cl/clojure-lsp/package.nix index 73f8e6dcd4310..23c23f8065c5f 100644 --- a/pkgs/development/tools/misc/clojure-lsp/default.nix +++ b/pkgs/by-name/cl/clojure-lsp/package.nix @@ -1,48 +1,53 @@ -{ lib -, stdenv -, buildGraalvmNativeImage -, babashka -, fetchurl -, fetchFromGitHub -, clojure -, writeScript -, testers -, clojure-lsp +{ + lib, + stdenv, + buildGraalvmNativeImage, + babashka, + fetchurl, + fetchFromGitHub, + clojure, + writeScript, + testers, + clojure-lsp, }: buildGraalvmNativeImage rec { pname = "clojure-lsp"; - version = "2023.08.06-00.28.06"; + version = "2024.04.22-11.50.26"; src = fetchFromGitHub { - owner = pname; - repo = pname; + owner = "clojure-lsp"; + repo = "clojure-lsp"; rev = version; - sha256 = "sha256-wc7M2cPRtdaRzZn3GNu/aCbQ2VqxiDxvu/b7qnBVUBo="; + hash = "sha256-GyPIFYR+/BZ+vq6+yuer5HoVILXLWNw1sW8XpJ7q4SA="; }; jar = fetchurl { url = "https://github.com/clojure-lsp/clojure-lsp/releases/download/${version}/clojure-lsp-standalone.jar"; - sha256 = "c301821ac6914999a44f5c1cd371d46b248fe9a2e31d43a666d0bc2656cfdd78"; + hash = "sha256-dB16225A7L3nWplvqlal+5gho+LmqqVGPN9dfasKaPk="; }; extraNativeImageBuildArgs = [ + # These build args mirror the build.clj upstream + # ref: https://github.com/clojure-lsp/clojure-lsp/blob/2024.04.22-11.50.26/cli/build.clj#L141-L144 "--no-fallback" "--native-image-info" + "--features=clj_easy.graal_build_time.InitClojureClasses" ]; doCheck = true; - checkPhase = '' - runHook preCheck - - export HOME="$(mktemp -d)" - ./${pname} --version | fgrep -q '${version}' - '' - # TODO: fix classpath issue per https://github.com/NixOS/nixpkgs/pull/153770 - #${babashka}/bin/bb integration-test ./${pname} - + '' - runHook postCheck - ''; + checkPhase = + '' + runHook preCheck + + export HOME="$(mktemp -d)" + ./clojure-lsp --version | fgrep -q '${version}' + '' + # TODO: fix classpath issue per https://github.com/NixOS/nixpkgs/pull/153770 + #${babashka}/bin/bb integration-test ./clojure-lsp + + '' + runHook postCheck + ''; passthru.tests.version = testers.testVersion { inherit version; @@ -71,11 +76,12 @@ buildGraalvmNativeImage rec { update-source-version clojure-lsp "$latest_version" ''; - meta = with lib; { + meta = { description = "Language Server Protocol (LSP) for Clojure"; homepage = "https://github.com/clojure-lsp/clojure-lsp"; - sourceProvenance = with sourceTypes; [ binaryBytecode ]; - license = licenses.mit; - maintainers = with maintainers; [ ericdallo ]; + changelog = "https://github.com/clojure-lsp/clojure-lsp/releases/tag/${version}"; + sourceProvenance = [ lib.sourceTypes.binaryBytecode ]; + license = lib.licenses.mit; + maintainers = [ lib.maintainers.ericdallo ]; }; } diff --git a/pkgs/by-name/co/codux/package.nix b/pkgs/by-name/co/codux/package.nix index 41f4193d40472..c9c7588470e65 100644 --- a/pkgs/by-name/co/codux/package.nix +++ b/pkgs/by-name/co/codux/package.nix @@ -5,11 +5,11 @@ let pname = "codux"; - version = "15.28.0"; + version = "15.29.0"; src = fetchurl { url = "https://github.com/wixplosives/codux-versions/releases/download/${version}/Codux-${version}.x86_64.AppImage"; - sha256 = "sha256-U4uOP2M/369bFOfkCncXzKCdYz9TwtzpUFNg63Oz978="; + sha256 = "sha256-BvDrhs37XGCQdQV2yQJZXlnNWVArFCMLfFlXuXz9ea0="; }; appimageContents = appimageTools.extractType2 { inherit pname version src; }; diff --git a/pkgs/by-name/co/cosmic-files/package.nix b/pkgs/by-name/co/cosmic-files/package.nix index 26897de2cd883..1105c2cc7436f 100644 --- a/pkgs/by-name/co/cosmic-files/package.nix +++ b/pkgs/by-name/co/cosmic-files/package.nix @@ -13,7 +13,7 @@ rustPlatform.buildRustPackage rec { pname = "cosmic-files"; - version = "unstable-2024-02-28"; + version = "0-unstable-2024-06-10"; src = fetchFromGitHub { owner = "pop-os"; @@ -40,7 +40,7 @@ rustPlatform.buildRustPackage rec { # COSMIC applications now uses vergen for the About page # Update the COMMIT_DATE to match when the commit was made - env.VERGEN_GIT_COMMIT_DATE = "2024-02-28"; + env.VERGEN_GIT_COMMIT_DATE = "2024-06-10"; env.VERGEN_GIT_SHA = src.rev; postPatch = '' diff --git a/pkgs/applications/networking/instant-messengers/coyim/default.nix b/pkgs/by-name/co/coyim/package.nix index 94606d6087a8a..2906d324c2ae6 100644 --- a/pkgs/applications/networking/instant-messengers/coyim/default.nix +++ b/pkgs/by-name/co/coyim/package.nix @@ -1,6 +1,6 @@ { lib , stdenv -, buildGoPackage +, buildGoModule , fetchFromGitHub , pkg-config , cairo @@ -11,28 +11,28 @@ , gtk3 }: -buildGoPackage rec { +buildGoModule { pname = "coyim"; - version = "0.4.1"; - - goPackagePath = "github.com/coyim/coyim"; + version = "0.4.1-unstable-2023-09-21"; src = fetchFromGitHub { owner = "coyim"; repo = "coyim"; - rev = "v${version}"; - sha256 = "sha256-PmB6POaHKEXzIAaz3lAbUOhtVOzrj5oXRk90giYo6SI="; + rev = "3f84daa8c27277543b1b4ad4536dde5100d9df12"; + sha256 = "sha256-lzhcUSBuAgYwcmdwnqNxKG0P6ZSjWeLS/g/gaF171D4="; }; + vendorHash = "sha256-zG7r/Db6XiwKoHRduGj3tEh/KT1hsuBoSGLYaZ+qO0Y="; + nativeBuildInputs = [ pkg-config wrapGAppsHook3 ]; buildInputs = [ glib cairo gdk-pixbuf gtk3 gnome.adwaita-icon-theme ]; - meta = with lib; { + meta = { description = "Safe and secure chat client"; mainProgram = "coyim"; homepage = "https://coy.im/"; - license = licenses.gpl3; + license = lib.licenses.gpl3; platforms = [ "x86_64-linux" "x86_64-darwin" ]; broken = stdenv.isDarwin; }; diff --git a/pkgs/by-name/cr/crabfit-api/package.nix b/pkgs/by-name/cr/crabfit-api/package.nix index 8ab103de0fbea..43fa2947b87b0 100644 --- a/pkgs/by-name/cr/crabfit-api/package.nix +++ b/pkgs/by-name/cr/crabfit-api/package.nix @@ -68,7 +68,7 @@ rustPlatform.buildRustPackage { description = "Enter your availability to find a time that works for everyone"; homepage = "https://github.com/GRA0007/crab.fit"; license = lib.licenses.gpl3; - maintainers = with lib.maintainers; [ thubrecht ]; + maintainers = with lib.maintainers; [ ]; mainProgram = "crabfit-api"; }; } diff --git a/pkgs/by-name/cr/crabfit-frontend/package.nix b/pkgs/by-name/cr/crabfit-frontend/package.nix index 24ad597d40cb6..9a694807abb48 100644 --- a/pkgs/by-name/cr/crabfit-frontend/package.nix +++ b/pkgs/by-name/cr/crabfit-frontend/package.nix @@ -113,6 +113,6 @@ stdenv.mkDerivation (finalAttrs: { description = "Enter your availability to find a time that works for everyone"; homepage = "https://github.com/GRA0007/crab.fit"; license = lib.licenses.gpl3; - maintainers = with lib.maintainers; [ thubrecht ]; + maintainers = with lib.maintainers; [ ]; }; }) diff --git a/pkgs/by-name/db/dbeaver-bin/package.nix b/pkgs/by-name/db/dbeaver-bin/package.nix index ee80efd1c3d6f..34115a39d21d4 100644 --- a/pkgs/by-name/db/dbeaver-bin/package.nix +++ b/pkgs/by-name/db/dbeaver-bin/package.nix @@ -12,16 +12,7 @@ stdenvNoCC.mkDerivation (finalAttrs: { pname = "dbeaver-bin"; - version = "24.0.5"; - - nativeBuildInputs = - [ makeWrapper ] - ++ lib.optionals (!stdenvNoCC.isDarwin) [ - gnused - wrapGAppsHook3 - autoPatchelfHook - ] - ++ lib.optionals stdenvNoCC.isDarwin [ undmg ]; + version = "24.1.0"; src = let @@ -34,10 +25,10 @@ stdenvNoCC.mkDerivation (finalAttrs: { aarch64-darwin = "macos-aarch64.dmg"; }; hash = selectSystem { - x86_64-linux = "sha256-q6VIr55hXn47kZrE2i6McEOfp2FBOvwB0CcUnRHFMZs="; - aarch64-linux = "sha256-Xn3X1C31UALBAsZIGyMWdp0HNhJEm5N+7Go7nMs8W64="; - x86_64-darwin = "sha256-XOQaMNQHOC4dVJXIUn4l4Oa7Gohbq+JMDFusIy/U+tc="; - aarch64-darwin = "sha256-554ea5p1MR4XIHtSeByd4S/Ke4cKRZbITTNRRDoRqPI="; + x86_64-linux = "sha256-cJcjUoZSpD87jy4GGIxMinZW4gxRZfcGO0GdGUGXI6g="; + aarch64-linux = "sha256-96t/T/VzzzaSWJbPBb1CH2FXqfhiH1d0MjRoPsRMRwo="; + x86_64-darwin = "sha256-8xqSL8fTveg1Y5huBTYZLyubajt27h4XUBzyYVF394A="; + aarch64-darwin = "sha256-r7WqJrNF1IgQHx3Na1fGk0ywsfh5t4Dl/u8hH6CPuoE="; }; in fetchurl { @@ -45,15 +36,25 @@ stdenvNoCC.mkDerivation (finalAttrs: { inherit hash; }; + sourceRoot = lib.optional stdenvNoCC.isDarwin "dbeaver.app"; + + nativeBuildInputs = + [ makeWrapper ] + ++ lib.optionals (!stdenvNoCC.isDarwin) [ + gnused + wrapGAppsHook3 + autoPatchelfHook + ] + ++ lib.optionals stdenvNoCC.isDarwin [ undmg ]; + dontConfigure = true; dontBuild = true; - sourceRoot = lib.optional stdenvNoCC.isDarwin "dbeaver.app"; - installPhase = if !stdenvNoCC.isDarwin then '' runHook preInstall + mkdir -p $out/opt/dbeaver $out/bin cp -r * $out/opt/dbeaver makeWrapper $out/opt/dbeaver/dbeaver $out/bin/dbeaver \ diff --git a/pkgs/by-name/db/dbeaver-bin/update.sh b/pkgs/by-name/db/dbeaver-bin/update.sh index 64b965da6db07..c89262bb3a29d 100755 --- a/pkgs/by-name/db/dbeaver-bin/update.sh +++ b/pkgs/by-name/db/dbeaver-bin/update.sh @@ -1,5 +1,5 @@ #!/usr/bin/env nix-shell -#!nix-shell -I nixpkgs=./. -i bash -p curl jq +#!nix-shell -I nixpkgs=./. -i bash -p curl jq common-updater-scripts latestVersion=$(curl "https://api.github.com/repos/dbeaver/dbeaver/tags" | jq -r '.[0].name') currentVersion=$(nix-instantiate --eval -E "with import ./. {}; dbeaver-bin.version" | tr -d '"') diff --git a/pkgs/by-name/db/dbgate/package.nix b/pkgs/by-name/db/dbgate/package.nix index 1b46f007aecce..5a1cea91a228c 100644 --- a/pkgs/by-name/db/dbgate/package.nix +++ b/pkgs/by-name/db/dbgate/package.nix @@ -7,21 +7,21 @@ }: let pname = "dbgate"; - version = "5.3.0"; + version = "5.3.1"; src = fetchurl { aarch64-linux = { url = "https://github.com/dbgate/dbgate/releases/download/v${version}/dbgate-${version}-linux_arm64.AppImage"; - hash = "sha256-FoNph6phZEMjndX6KNtSH8TpOpI0x4rmpTBh11bYV3c="; + hash = "sha256-Qz0VA2pHT8muw9RdLg7Y3w3mJ3ubFnqf4dmfdZdnJHI="; }; x86_64-linux = { url = "https://github.com/dbgate/dbgate/releases/download/v${version}/dbgate-${version}-linux_x86_64.AppImage"; - hash = "sha256-HsWT099apLtL5KAy3Shw0uEoXzpWGAyD63L3NhT/JlU="; + hash = "sha256-H/2Tb6ZnO6LJx+rv/ADdItaRMP95x4G3lPNK0sbZn9I="; }; x86_64-darwin = { url = "https://github.com/dbgate/dbgate/releases/download/v${version}/dbgate-${version}-mac_x64.dmg"; - hash = "sha256-bdCwvfmfOCpVW1yTFxsLxveg9uQW1O8ODkCGpiujRCE="; + hash = "sha256-gZrfv9qe2arytVgiYtX9uwfwC4Z30SHEDiBUXcpF968="; }; } .${stdenv.system} or (throw "dbgate: ${stdenv.system} is unsupported."); diff --git a/pkgs/by-name/de/design/package.nix b/pkgs/by-name/de/design/package.nix new file mode 100644 index 0000000000000..fc6b5f2fc4b47 --- /dev/null +++ b/pkgs/by-name/de/design/package.nix @@ -0,0 +1,58 @@ +{ lib +, stdenv +, fetchFromGitHub +, wrapGAppsHook4 +, appstream-glib +, blueprint-compiler +, desktop-file-utils +, meson +, ninja +, pkg-config +, glib +, gjs +, libadwaita +}: + +stdenv.mkDerivation rec { + pname = "design"; + version = "46-alpha1"; + + src = fetchFromGitHub { + owner = "dubstar-04"; + repo = "Design"; + rev = "v${version}"; + fetchSubmodules = true; + hash = "sha256-Q4R/Ztu4w8IRvq15xNXN/iP/6hIHe/W+me1jROGpYc8="; + }; + + nativeBuildInputs = [ + appstream-glib + blueprint-compiler + desktop-file-utils + gjs + meson + ninja + pkg-config + wrapGAppsHook4 + ]; + + buildInputs = [ + glib + libadwaita + ]; + + # Use a symlink here so that the basename isn't changed by the wrapper which is used to decide the resource path. + postInstall = '' + mv $out/bin/io.github.dubstar_04.design $out/share/design/ + ln -s $out/share/design/io.github.dubstar_04.design $out/bin + ''; + + meta = { + homepage = "https://github.com/dubstar-04/Design"; + description = "2D CAD For GNOME"; + maintainers = with lib.maintainers; [ linsui ]; + license = lib.licenses.gpl3Plus; + platforms = lib.platforms.linux; + mainProgram = "io.github.dubstar_04.design"; + }; +} diff --git a/pkgs/by-name/di/distribution/package.nix b/pkgs/by-name/di/distribution/package.nix new file mode 100644 index 0000000000000..9da917b512180 --- /dev/null +++ b/pkgs/by-name/di/distribution/package.nix @@ -0,0 +1,67 @@ +{ lib +, buildGoModule +, fetchFromGitHub +, fetchpatch +, nix-update-script +, testers +, distribution +}: + +buildGoModule rec { + pname = "distribution"; + version = "3.0.0-alpha.1"; + + src = fetchFromGitHub { + owner = "distribution"; + repo = "distribution"; + rev = "v${version}"; + hash = "sha256-reguAtBkEC9OMUTdCtFY6l0fkk28VoA0IlPcQ0sz84I="; + }; + + patches = [ + # fix: load gcs credentials and client inside DriverConstructor + # Needed to pass the tests. Remove with next update. + (fetchpatch { + url = "https://github.com/distribution/distribution/commit/14366a2dff6a8f595e39d258085381731b43cec6.diff"; + hash = "sha256-0ns9JuIeLBzRLMVxY6uaWTIYcRRbuwQ+n9tmK+Pvf4U="; + }) + # fix: add missing skip in s3 driver test + # Needed to pass the tests. Remove with next update. + (fetchpatch { + url = "https://github.com/distribution/distribution/commit/6908e0d5facd31ed32046df03a09040c964be0b3.patch"; + hash = "sha256-ww+BwBGw+dkZ2FhVzynehR+sNYCgq8/KkPDP9ac6NWg="; + }) + ]; + + vendorHash = null; + + checkFlags = [ + # TestHTTPChecker: requires internet access. + # TestInMemoryDriverSuite: timeout after 10 minutes, looks like a deadlock. + "-skip=^TestHTTPChecker$|^TestInMemoryDriverSuite$" + ]; + + passthru = { + tests.version = testers.testVersion { + package = distribution; + version = "v${version}"; + }; + updateScript = nix-update-script { }; + }; + + meta = with lib; { + description = "Toolkit to pack, ship, store, and deliver container content"; + longDescription = '' + Distribution is a Open Source Registry implementation for storing and distributing container + images and other content using the OCI Distribution Specification. The goal of this project + is to provide a simple, secure, and scalable base for building a large scale registry solution + or running a simple private registry. + ''; + homepage = "https://distribution.github.io/distribution/"; + changelog = "https://github.com/distribution/distribution/releases/tag/v${version}"; + license = licenses.asl20; + maintainers = [ ]; + mainProgram = "registry"; + platforms = platforms.unix; + }; +} diff --git a/pkgs/by-name/do/docfd/package.nix b/pkgs/by-name/do/docfd/package.nix index c8c3e193c360f..3636296b8de44 100644 --- a/pkgs/by-name/do/docfd/package.nix +++ b/pkgs/by-name/do/docfd/package.nix @@ -21,7 +21,7 @@ let in buildDunePackage' rec { pname = "docfd"; - version = "6.0.1"; + version = "7.0.0"; minimalOCamlVersion = "5.1"; @@ -29,7 +29,7 @@ buildDunePackage' rec { owner = "darrenldl"; repo = "docfd"; rev = version; - hash = "sha256-pNBWSPII+r9MMmyXBzxQ6hMNrN7nwcdhrpufzj00s2E="; + hash = "sha256-R/UOA1rf9NnEQQWn/ToCZuUSC48DPqglrb+5ZjCdpb0="; }; nativeBuildInputs = [ diff --git a/pkgs/by-name/do/docuum/package.nix b/pkgs/by-name/do/docuum/package.nix index 62a46f0a97e13..3eae913da1e1f 100644 --- a/pkgs/by-name/do/docuum/package.nix +++ b/pkgs/by-name/do/docuum/package.nix @@ -7,16 +7,16 @@ rustPlatform.buildRustPackage rec { pname = "docuum"; - version = "0.24.0"; + version = "0.25.0"; src = fetchFromGitHub { owner = "stepchowfun"; repo = "docuum"; rev = "v${version}"; - hash = "sha256-/30wuLnCcomgJ14c5rNbitD1dEpvyRal3L60gQdZPBU="; + hash = "sha256-nWd6h39jU1eZWPFMxhxActsmrs9k0TDMlealuzTa+o0="; }; - cargoHash = "sha256-BvZM0tAgwoOO0VFQEoifgmENnW3cfKV3Zj872/Lki6A="; + cargoHash = "sha256-uoQ1qUII6TSZsosAdNfs2CREVuN2kuT9Bmi5vuDT/rY="; checkFlags = [ # fails, no idea why diff --git a/pkgs/by-name/do/dosbox-staging/package.nix b/pkgs/by-name/do/dosbox-staging/package.nix index 0c1e985c73174..5be06575236ef 100644 --- a/pkgs/by-name/do/dosbox-staging/package.nix +++ b/pkgs/by-name/do/dosbox-staging/package.nix @@ -2,6 +2,7 @@ lib, stdenv, fetchFromGitHub, + fetchpatch, SDL2, SDL2_image, SDL2_net, @@ -41,6 +42,14 @@ stdenv.mkDerivation (finalAttrs: { hash = "sha256-XGssEyX+AVv7/ixgGTRtPFjsUSX0FT0fhP+TXsFl2fY="; }; + patches = [ + (fetchpatch { + name = "darwin-allow-bypass-wraps.patch"; + url = "https://github.com/dosbox-staging/dosbox-staging/commit/9f0fc1dc762010e5f7471d01c504d817a066cae3.patch"; + hash = "sha256-IzxRE1Vr+M8I5hdy80UwebjJ5R1IlH9ymaYgs6VwAO4="; + }) + ]; + nativeBuildInputs = [ gtest makeWrapper diff --git a/pkgs/by-name/dy/dynamodb-local/package.nix b/pkgs/by-name/dy/dynamodb-local/package.nix index 146077be70958..55258e1fe3fa2 100644 --- a/pkgs/by-name/dy/dynamodb-local/package.nix +++ b/pkgs/by-name/dy/dynamodb-local/package.nix @@ -26,11 +26,11 @@ let in stdenvNoCC.mkDerivation (finalAttrs: { pname = "dynamodb-local"; - version = "2.5.1"; + version = "2.5.2"; src = fetchurl { - url = "https://d1ni2b6xgvw0s0.cloudfront.net/v2.x/dynamodb_local_2024-06-06.tar.gz"; - hash = "sha256-fbd+F9sk/QJZgS4O2mFvEKbbV9hAMLuCt22BMriFYBQ="; + url = "https://d1ni2b6xgvw0s0.cloudfront.net/v2.x/dynamodb_local_2024-06-20.tar.gz"; + hash = "sha256-9SlgKNZFuy0/mf7eCjaUWVbrc4YXRDDnXADm+xs0540="; }; sourceRoot = "."; diff --git a/pkgs/tools/system/efibootmgr/default.nix b/pkgs/by-name/ef/efibootmgr/package.nix index adc33c782a016..c81f5123c67a8 100644 --- a/pkgs/tools/system/efibootmgr/default.nix +++ b/pkgs/by-name/ef/efibootmgr/package.nix @@ -1,4 +1,11 @@ -{ lib, stdenv, fetchFromGitHub, pkg-config, efivar, popt }: +{ + lib, + stdenv, + fetchFromGitHub, + pkg-config, + efivar, + popt, +}: stdenv.mkDerivation rec { pname = "efibootmgr"; @@ -13,20 +20,24 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ pkg-config ]; - buildInputs = [ efivar popt ]; + buildInputs = [ + efivar + popt + ]; makeFlags = [ "EFIDIR=nixos" "PKG_CONFIG=${stdenv.cc.targetPrefix}pkg-config" ]; - installFlags = [ "prefix=$(out)" ]; + installFlags = [ "prefix=${placeholder "out"}" ]; - meta = with lib; { + meta = { description = "Linux user-space application to modify the Intel Extensible Firmware Interface (EFI) Boot Manager"; homepage = "https://github.com/rhboot/efibootmgr"; - license = licenses.gpl2Only; - maintainers = with maintainers; [ ]; - platforms = platforms.linux; + changelog = "https://github.com/rhboot/efibootmgr/releases/tag/${src.rev}"; + license = lib.licenses.gpl2Only; + maintainers = with lib.maintainers; [ getchoo ]; + platforms = lib.platforms.linux; }; } diff --git a/pkgs/by-name/ek/eksctl/package.nix b/pkgs/by-name/ek/eksctl/package.nix index 5cf236b999665..726de6c840696 100644 --- a/pkgs/by-name/ek/eksctl/package.nix +++ b/pkgs/by-name/ek/eksctl/package.nix @@ -6,13 +6,13 @@ buildGoModule rec { pname = "eksctl"; - version = "0.182.0"; + version = "0.183.0"; src = fetchFromGitHub { owner = "weaveworks"; repo = pname; rev = version; - hash = "sha256-KCd0AuizmsdGOBh7YZLEKcehoygd19HjjFu7V6NsVVw="; + hash = "sha256-u2k5Icrqy71HNif/hOElsJoRsLk7CL3uE197ehWenhE="; }; vendorHash = "sha256-eaEAC1jDmApcyn0RC5pvonYVWblRCB2PFTr/K5rZvtU="; diff --git a/pkgs/by-name/en/encled/package.nix b/pkgs/by-name/en/encled/package.nix index f75b75cd6a02f..8b48f11bc8b00 100644 --- a/pkgs/by-name/en/encled/package.nix +++ b/pkgs/by-name/en/encled/package.nix @@ -23,6 +23,6 @@ stdenv.mkDerivation { mainProgram = "encled"; homepage = "https://github.com/amarao/sdled"; license = lib.licenses.gpl2Plus; - maintainers = [ lib.maintainers.lheckemann ]; + maintainers = [ ]; }; } diff --git a/pkgs/by-name/er/errands/package.nix b/pkgs/by-name/er/errands/package.nix index 3c695781d28ee..5c43079ed0f1b 100644 --- a/pkgs/by-name/er/errands/package.nix +++ b/pkgs/by-name/er/errands/package.nix @@ -17,7 +17,7 @@ }: python3Packages.buildPythonApplication rec { pname = "errands"; - version = "46.2.2"; + version = "46.2.3"; pyproject = false; @@ -25,7 +25,7 @@ python3Packages.buildPythonApplication rec { owner = "mrvladus"; repo = "Errands"; rev = "refs/tags/${version}"; - hash = "sha256-lX0exxZMbq/iC41bByMfT478vhOQadPJAN72PHiznKc="; + hash = "sha256-JBvyMWEUKUKeAOTCbzNwqpv2ox7bS9p+QsLkJv/lK8k="; }; nativeBuildInputs = [ diff --git a/pkgs/by-name/ez/eza/package.nix b/pkgs/by-name/ez/eza/package.nix index e2f8f6ccebf0b..0ba619b693ca2 100644 --- a/pkgs/by-name/ez/eza/package.nix +++ b/pkgs/by-name/ez/eza/package.nix @@ -17,16 +17,16 @@ rustPlatform.buildRustPackage rec { pname = "eza"; - version = "0.18.18"; + version = "0.18.19"; src = fetchFromGitHub { owner = "eza-community"; repo = "eza"; rev = "v${version}"; - hash = "sha256-MBu5zwidjIWs9z6DXYNGsHIwic3ipScAw6TZjSvEvJk="; + hash = "sha256-UP0z7rcOmwKqpmKkQy5/6W+XWKfAiEQifKOnrdCgBYo="; }; - cargoHash = "sha256-TsW3Rl4EKvrPPhEYzp0K3lBkDYJiehctT/FnkL3yazU="; + cargoHash = "sha256-x53sQ/DEx7SkQ8vECg/5lkcdJA3WbcDaYapbXub+9nA="; nativeBuildInputs = [ cmake pkg-config installShellFiles pandoc ]; buildInputs = [ zlib ] diff --git a/pkgs/by-name/fa/fastcdr/package.nix b/pkgs/by-name/fa/fastcdr/package.nix index d1976559b69d8..140e67df70e40 100644 --- a/pkgs/by-name/fa/fastcdr/package.nix +++ b/pkgs/by-name/fa/fastcdr/package.nix @@ -10,13 +10,13 @@ stdenv.mkDerivation (finalAttrs: { pname = "fastcdr"; - version = "2.2.1"; + version = "2.2.2"; src = fetchFromGitHub { owner = "eProsima"; repo = "Fast-CDR"; rev = "v${finalAttrs.version}"; - hash = "sha256-9eIPGGrDBsxLbX+oR++jg8ddUYKOC3nLnqg0q1bxPZU="; + hash = "sha256-gNVHG52KSp6CKGU4RWyFHcI3gAp8kjylS80mCjm/DiY="; }; patches = [ diff --git a/pkgs/by-name/fc/fcitx5-catppuccin/package.nix b/pkgs/by-name/fc/fcitx5-catppuccin/package.nix deleted file mode 100644 index 954471d716625..0000000000000 --- a/pkgs/by-name/fc/fcitx5-catppuccin/package.nix +++ /dev/null @@ -1,39 +0,0 @@ -{ - lib, - stdenvNoCC, - fetchFromGitHub, - unstableGitUpdater, -}: -stdenvNoCC.mkDerivation { - pname = "fcitx5-catppuccin"; - version = "0-unstable-2022-10-05"; - - src = fetchFromGitHub { - owner = "catppuccin"; - repo = "fcitx5"; - rev = "ce244cfdf43a648d984719fdfd1d60aab09f5c97"; - hash = "sha256-uFaCbyrEjv4oiKUzLVFzw+UY54/h7wh2cntqeyYwGps="; - }; - - dontConfigure = true; - dontBuild = true; - - installPhase = '' - runHook preInstall - - mkdir -p $out/share/fcitx5/themes - cp -r src/catppuccin-* $out/share/fcitx5/themes - - runHook postInstall - ''; - - passthru.updateScript = unstableGitUpdater { }; - - meta = with lib; { - description = "Soothing pastel theme for Fcitx5"; - homepage = "https://github.com/catppuccin/fcitx5"; - license = licenses.mit; - maintainers = with maintainers; [ Guanran928 ]; - platforms = platforms.all; - }; -} diff --git a/pkgs/by-name/fi/firefly-iii/package.nix b/pkgs/by-name/fi/firefly-iii/package.nix index 6d94cf3ad4ebc..0a15b4eaa9214 100644 --- a/pkgs/by-name/fi/firefly-iii/package.nix +++ b/pkgs/by-name/fi/firefly-iii/package.nix @@ -8,20 +8,20 @@ let pname = "firefly-iii"; - version = "6.1.17"; + version = "6.1.18"; phpPackage = php83; src = fetchFromGitHub { owner = "firefly-iii"; repo = "firefly-iii"; rev = "v${version}"; - hash = "sha256-KbTHbhv+8Lv5fk1Z8nxICySk6MK6Xc3TNATSIUnENa4="; + hash = "sha256-mA7gvKhHouUUz1Aix7253O/+VcufoEFwdcJeZxnazEo="; }; assets = buildNpmPackage { pname = "${pname}-assets"; inherit version src; - npmDepsHash = "sha256-Nlz+zsvUx9X70uofh8dWEvru8SAQzIh+XxGGOH5npyY="; + npmDepsHash = "sha256-MoxkNxfVeIFkiNVzfehQ9FpC65kBj8ZmvwaRf4MVRIg="; dontNpmBuild = true; installPhase = '' runHook preInstall @@ -36,7 +36,7 @@ in phpPackage.buildComposerProject (finalAttrs: { inherit pname src version; - vendorHash = "sha256-mDVmZUCER1eaTXhh8VIbGbPkkpOeE6fTBhq8UnTlWPc="; + vendorHash = "sha256-EpMypgj6lZDz6T94bGoCUH9IVwh7VB4Ds08AcCsreRw="; passthru = { inherit phpPackage; diff --git a/pkgs/development/libraries/flatpak/binary-path.patch b/pkgs/by-name/fl/flatpak/binary-path.patch index 9da437df91b71..9da437df91b71 100644 --- a/pkgs/development/libraries/flatpak/binary-path.patch +++ b/pkgs/by-name/fl/flatpak/binary-path.patch diff --git a/pkgs/development/libraries/flatpak/fix-fonts-icons.patch b/pkgs/by-name/fl/flatpak/fix-fonts-icons.patch index 31a96d88b7dd5..31a96d88b7dd5 100644 --- a/pkgs/development/libraries/flatpak/fix-fonts-icons.patch +++ b/pkgs/by-name/fl/flatpak/fix-fonts-icons.patch diff --git a/pkgs/development/libraries/flatpak/fix-icon-validation.patch b/pkgs/by-name/fl/flatpak/fix-icon-validation.patch index 0e4db2b162f19..0e4db2b162f19 100644 --- a/pkgs/development/libraries/flatpak/fix-icon-validation.patch +++ b/pkgs/by-name/fl/flatpak/fix-icon-validation.patch diff --git a/pkgs/development/libraries/flatpak/fix-paths.patch b/pkgs/by-name/fl/flatpak/fix-paths.patch index 67f0d4eba71f5..67f0d4eba71f5 100644 --- a/pkgs/development/libraries/flatpak/fix-paths.patch +++ b/pkgs/by-name/fl/flatpak/fix-paths.patch diff --git a/pkgs/development/libraries/flatpak/fix-test-paths.patch b/pkgs/by-name/fl/flatpak/fix-test-paths.patch index ebbcbde5e951f..ebbcbde5e951f 100644 --- a/pkgs/development/libraries/flatpak/fix-test-paths.patch +++ b/pkgs/by-name/fl/flatpak/fix-test-paths.patch diff --git a/pkgs/development/libraries/flatpak/default.nix b/pkgs/by-name/fl/flatpak/package.nix index cb2fc48c31de6..fc109bf508345 100644 --- a/pkgs/development/libraries/flatpak/default.nix +++ b/pkgs/by-name/fl/flatpak/package.nix @@ -1,55 +1,59 @@ -{ lib, stdenv -, fetchurl -, autoreconfHook -, docbook_xml_dtd_45 -, docbook-xsl-nons -, which -, libxml2 -, gobject-introspection -, gtk-doc -, intltool -, libxslt -, pkg-config -, xmlto -, substituteAll -, runCommand -, bison -, xdg-dbus-proxy -, p11-kit -, appstream -, bubblewrap -, bzip2 -, curl -, dbus -, glib -, gpgme -, json-glib -, libarchive -, libcap -, libseccomp -, coreutils -, socat -, gettext -, hicolor-icon-theme -, shared-mime-info -, desktop-file-utils -, gtk3 -, fuse3 -, nixosTests -, xz -, zstd -, ostree -, polkit -, python3 -, systemd -, xorg -, valgrind -, glib-networking -, wrapGAppsNoGuiHook -, dconf -, gsettings-desktop-schemas -, librsvg -, makeWrapper +{ + lib, + stdenv, + fetchurl, + runCommand, + appstream, + autoreconfHook, + bison, + bubblewrap, + bzip2, + coreutils, + curl, + dbus, + dconf, + desktop-file-utils, + docbook_xml_dtd_45, + docbook-xsl-nons, + fuse3, + gettext, + glib, + glib-networking, + gobject-introspection, + gpgme, + gsettings-desktop-schemas, + gtk3, + gtk-doc, + hicolor-icon-theme, + intltool, + json-glib, + libarchive, + libcap, + librsvg, + libseccomp, + libxml2, + libxslt, + nix-update-script, + nixosTests, + nixos-icons, + ostree, + p11-kit, + pkg-config, + polkit, + python3, + shared-mime-info, + socat, + substituteAll, + systemd, + testers, + valgrind, + which, + wrapGAppsNoGuiHook, + xdg-dbus-proxy, + xmlto, + xorg, + xz, + zstd, }: stdenv.mkDerivation (finalAttrs: { @@ -57,11 +61,18 @@ stdenv.mkDerivation (finalAttrs: { version = "1.14.6"; # TODO: split out lib once we figure out what to do with triggerdir - outputs = [ "out" "dev" "man" "doc" "devdoc" "installedTests" ]; + outputs = [ + "out" + "dev" + "man" + "doc" + "devdoc" + "installedTests" + ]; src = fetchurl { url = "https://github.com/flatpak/flatpak/releases/download/${finalAttrs.version}/flatpak-${finalAttrs.version}.tar.xz"; - sha256 = "sha256-U482ssb4xw7v0S0TrVsa2DCCAQaovTqfa45NnegeSUY="; # Taken from https://github.com/flatpak/flatpak/releases/ + hash = "sha256-U482ssb4xw7v0S0TrVsa2DCCAQaovTqfa45NnegeSUY="; }; patches = [ @@ -69,7 +80,12 @@ stdenv.mkDerivation (finalAttrs: { # https://github.com/flatpak/flatpak/issues/1460 (substituteAll { src = ./fix-test-paths.patch; - inherit coreutils gettext socat gtk3; + inherit + coreutils + gettext + socat + gtk3 + ; smi = shared-mime-info; dfu = desktop-file-utils; hicolorIconTheme = hicolor-icon-theme; @@ -149,9 +165,7 @@ stdenv.mkDerivation (finalAttrs: { ostree ]; - nativeCheckInputs = [ - valgrind - ]; + nativeCheckInputs = [ valgrind ]; # TODO: some issues with temporary files doCheck = false; @@ -162,10 +176,12 @@ stdenv.mkDerivation (finalAttrs: { configureFlags = [ "--with-curl" - "--with-system-bubblewrap=${bubblewrap}/bin/bwrap" - "--with-system-dbus-proxy=${xdg-dbus-proxy}/bin/xdg-dbus-proxy" + "--with-system-bubblewrap=${lib.getExe bubblewrap}" + "--with-system-dbus-proxy=${lib.getExe xdg-dbus-proxy}" "--with-dbus-config-dir=${placeholder "out"}/share/dbus-1/system.d" + "--with-profile-dir=${placeholder "out"}/etc/profile.d" "--localstatedir=/var" + "--sysconfdir=/etc" "--enable-gtk-doc" "--enable-installed-tests" ]; @@ -175,15 +191,15 @@ stdenv.mkDerivation (finalAttrs: { "installed_test_metadir=${placeholder "installedTests"}/share/installed-tests/flatpak" ]; - postPatch = let - vsc-py = python3.withPackages (pp: [ - pp.pyparsing - ]); - in '' - patchShebangs buildutil - patchShebangs tests - PATH=${lib.makeBinPath [vsc-py]}:$PATH patchShebangs --build subprojects/variant-schema-compiler/variant-schema-compiler - ''; + postPatch = + let + vsc-py = python3.withPackages (pp: [ pp.pyparsing ]); + in + '' + patchShebangs buildutil + patchShebangs tests + PATH=${lib.makeBinPath [ vsc-py ]}:$PATH patchShebangs --build subprojects/variant-schema-compiler/variant-schema-compiler + ''; passthru = { icon-validator-patch = substituteAll { @@ -191,21 +207,29 @@ stdenv.mkDerivation (finalAttrs: { inherit (builtins) storeDir; }; + updateScript = nix-update-script { }; + tests = { installedTests = nixosTests.installed-tests.flatpak; validate-icon = runCommand "test-icon-validation" { } '' - ${finalAttrs.finalPackage}/libexec/flatpak-validate-icon --sandbox 512 512 ${../../../applications/audio/zynaddsubfx/ZynLogo.svg} > "$out" + ${finalAttrs.finalPackage}/libexec/flatpak-validate-icon \ + --sandbox 512 512 \ + "${nixos-icons}/share/icons/hicolor/scalable/apps/nix-snowflake-white.svg" > "$out" + grep format=svg "$out" ''; + + version = testers.testVersion { package = finalAttrs.finalPackage; }; }; }; - meta = with lib; { + meta = { description = "Linux application sandboxing and distribution framework"; homepage = "https://flatpak.org/"; - license = licenses.lgpl21Plus; - maintainers = with maintainers; [ ]; - platforms = platforms.linux; + changelog = "https://github.com/flatpak/flatpak/releases/tag/${finalAttrs.version}"; + license = lib.licenses.lgpl21Plus; + maintainers = with lib.maintainers; [ getchoo ]; + platforms = lib.platforms.linux; }; }) diff --git a/pkgs/development/libraries/flatpak/respect-xml-catalog-files-var.patch b/pkgs/by-name/fl/flatpak/respect-xml-catalog-files-var.patch index 4cee60be2d07d..4cee60be2d07d 100644 --- a/pkgs/development/libraries/flatpak/respect-xml-catalog-files-var.patch +++ b/pkgs/by-name/fl/flatpak/respect-xml-catalog-files-var.patch diff --git a/pkgs/development/libraries/flatpak/unset-env-vars.patch b/pkgs/by-name/fl/flatpak/unset-env-vars.patch index 2a88d24f49166..2a88d24f49166 100644 --- a/pkgs/development/libraries/flatpak/unset-env-vars.patch +++ b/pkgs/by-name/fl/flatpak/unset-env-vars.patch diff --git a/pkgs/by-name/fu/furmark/package.nix b/pkgs/by-name/fu/furmark/package.nix index bc7e18d3c021f..c3e84546f826b 100644 --- a/pkgs/by-name/fu/furmark/package.nix +++ b/pkgs/by-name/fu/furmark/package.nix @@ -1,6 +1,7 @@ { autoPatchelfHook, copyDesktopItems, + fetchurl, fetchzip, lib, libGL, @@ -79,6 +80,10 @@ stdenv.mkDerivation (finalAttrs: { comment = description; desktopName = name; genericName = name; + icon = fetchurl { + url = "https://www.geeks3d.com/furmark/i/20240220-furmark-logo-02.png"; + hash = "sha256-EqhWQgTEmF/2AcqDxgGtr2m5SMYup28hPEhI6ssFw7g="; + }; categories = [ "System" "Monitor" diff --git a/pkgs/by-name/fz/fzf-make/package.nix b/pkgs/by-name/fz/fzf-make/package.nix index 9960f2cad6534..5bc3552fcc36c 100644 --- a/pkgs/by-name/fz/fzf-make/package.nix +++ b/pkgs/by-name/fz/fzf-make/package.nix @@ -10,16 +10,16 @@ rustPlatform.buildRustPackage rec { pname = "fzf-make"; - version = "0.33.0"; + version = "0.34.0"; src = fetchFromGitHub { owner = "kyu08"; repo = "fzf-make"; rev = "v${version}"; - hash = "sha256-ct4ugHqSekAZrkuFotjzMzcoJ0+P7d0Qhi79SqVZHPM="; + hash = "sha256-x+y0K6b/yCskowOuvjcSCJXM5ym2Qn84/Thui0ahUKU="; }; - cargoHash = "sha256-0VhcpW56OePvHVFPG4QaK8ezvNUAuWyI5gztjuKFKVQ="; + cargoHash = "sha256-cIoc3sGy33iTkVAln4oSYSBGB0iAFanv746upxnv0ZA="; nativeBuildInputs = [ makeBinaryWrapper ]; diff --git a/pkgs/applications/networking/gabutdm/default.nix b/pkgs/by-name/ga/gabutdm/package.nix index cb587ea7f093f..4458efcce5f40 100644 --- a/pkgs/applications/networking/gabutdm/default.nix +++ b/pkgs/by-name/ga/gabutdm/package.nix @@ -14,18 +14,19 @@ , json-glib , qrencode , curl +, libadwaita , aria2 }: stdenv.mkDerivation rec { pname = "gabutdm"; - version = "2.1.6"; + version = "2.2.8"; src = fetchFromGitHub { owner = "gabutakut"; - repo = pname; + repo = "gabutdm"; rev = version; - hash = "sha256-ai5LsoK21XwXqL4LRuKsOR1/JV6LnP+1ZJ9fMHpj178="; + hash = "sha256-HF+zBDkA9fYauLUYsvJJxcRggHu+5qH4rm0IM/tL9Hc="; }; nativeBuildInputs = [ @@ -45,11 +46,12 @@ stdenv.mkDerivation rec { json-glib qrencode curl + libadwaita ]; postPatch = '' substituteInPlace meson/post_install.py \ - --replace gtk-update-icon-cache gtk4-update-icon-cache + --replace-fail gtk-update-icon-cache gtk4-update-icon-cache ''; preFixup = '' diff --git a/pkgs/by-name/ga/gamescope/package.nix b/pkgs/by-name/ga/gamescope/package.nix index 4a07becaedc06..78c491827f949 100644 --- a/pkgs/by-name/ga/gamescope/package.nix +++ b/pkgs/by-name/ga/gamescope/package.nix @@ -1,8 +1,10 @@ { stdenv +, edid-decode , fetchFromGitHub , meson , pkg-config , ninja +, cmake , xorg , libdrm , libei @@ -18,14 +20,13 @@ , SDL2 , pipewire , pixman +, python3 , libinput , glslang , hwdata -, openvr , stb , wlroots , libdecor -, libdisplay-info , lib , makeBinaryWrapper , patchelfUnstable @@ -43,14 +44,14 @@ let in stdenv.mkDerivation (finalAttrs: { pname = "gamescope"; - version = "3.14.18"; + version = "3.14.22"; src = fetchFromGitHub { owner = "ValveSoftware"; repo = "gamescope"; rev = "refs/tags/${finalAttrs.version}"; fetchSubmodules = true; - hash = "sha256-XcefR0wiDHQY7wMX+LQTEntffi2RdMW8m2HNQMz035A="; + hash = "sha256-/muitEE3LCU6Xnjbpczb/zy2JRvUbBPT5L13T/v3MvE="; }; patches = [ @@ -62,6 +63,8 @@ stdenv.mkDerivation (finalAttrs: { # so `placeholder "out"` ends up pointing to the wrong place postPatch = '' substituteInPlace src/reshade_effect_manager.cpp --replace "@out@" "$out" + # Patching shebangs in the main `libdisplay-info` build + patchShebangs subprojects/libdisplay-info/tool/gen-search-table.py ''; mesonFlags = [ @@ -82,6 +85,12 @@ stdenv.mkDerivation (finalAttrs: { meson pkg-config ninja + # For `libdisplay-info` + python3 + hwdata + edid-decode + # For OpenVR + cmake ] ++ lib.optionals enableExecutable [ makeBinaryWrapper glslang @@ -94,7 +103,6 @@ stdenv.mkDerivation (finalAttrs: { wayland wayland-protocols vulkan-loader - openvr glm ] ++ lib.optionals enableWsi [ vulkan-headers @@ -120,7 +128,6 @@ stdenv.mkDerivation (finalAttrs: { 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"7131497b0f887e8061b430c530240063d33bf9455fa34438f388a245da69e0a5" +dependencies = [ + "proc-macro-crate 1.3.1", + "proc-macro2", + "quote", + "regex", + "syn 1.0.109", + "zvariant_utils", +] + +[[package]] +name = "zbus_names" +version = "2.6.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "437d738d3750bed6ca9b8d423ccc7a8eb284f6b1d6d4e225a0e4e6258d864c8d" +dependencies = [ + "serde", + "static_assertions", + "zvariant", +] + +[[package]] +name = "zerocopy" +version = "0.7.32" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "74d4d3961e53fa4c9a25a8637fc2bfaf2595b3d3ae34875568a5cf64787716be" +dependencies = [ + "zerocopy-derive", +] + +[[package]] +name = "zerocopy-derive" +version = "0.7.32" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "9ce1b18ccd8e73a9321186f97e46f9f04b778851177567b1975109d26a08d2a6" +dependencies = [ + "proc-macro2", + "quote", + "syn 2.0.58", +] + +[[package]] +name = "zeroize" +version = "1.7.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "525b4ec142c6b68a2d10f01f7bbf6755599ca3f81ea53b8431b7dd348f5fdb2d" + +[[package]] +name = "zip" +version = "0.6.6" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "760394e246e4c28189f19d488c058bf16f564016aefac5d32bb1f3b51d5e9261" +dependencies = [ + "aes", + "byteorder", + "bzip2", + "constant_time_eq", + "crc32fast", + "crossbeam-utils", + "flate2", + "hmac", + "pbkdf2", + "sha1", + "time", + "zstd", +] + +[[package]] +name = "zstd" +version = "0.11.2+zstd.1.5.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "20cc960326ece64f010d2d2107537f26dc589a6573a316bd5b1dba685fa5fde4" +dependencies = [ + "zstd-safe", +] + +[[package]] +name = "zstd-safe" +version = "5.0.2+zstd.1.5.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "1d2a5585e04f9eea4b2a3d1eca508c4dee9592a89ef6f450c11719da0726f4db" +dependencies = [ + "libc", + "zstd-sys", +] + +[[package]] +name = "zstd-sys" +version = "2.0.10+zstd.1.5.6" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "c253a4914af5bafc8fa8c86ee400827e83cf6ec01195ec1f1ed8441bf00d65aa" +dependencies = [ + "cc", + "pkg-config", +] + +[[package]] +name = "zune-inflate" +version = "0.2.54" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "73ab332fe2f6680068f3582b16a24f90ad7096d5d39b974d1c0aff0125116f02" +dependencies = [ + "simd-adler32", +] + +[[package]] +name = "zvariant" +version = "3.15.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "4eef2be88ba09b358d3b58aca6e41cd853631d44787f319a1383ca83424fb2db" +dependencies = [ + "byteorder", + "enumflags2", + "libc", + "serde", + "static_assertions", + "zvariant_derive", +] + +[[package]] +name = "zvariant_derive" +version = "3.15.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "37c24dc0bed72f5f90d1f8bb5b07228cbf63b3c6e9f82d82559d4bae666e7ed9" +dependencies = [ + "proc-macro-crate 1.3.1", + "proc-macro2", + "quote", + "syn 1.0.109", + "zvariant_utils", +] + +[[package]] +name = "zvariant_utils" +version = "1.0.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "7234f0d811589db492d16893e3f21e8e2fd282e6d01b0cddee310322062cc200" +dependencies = [ + "proc-macro2", + "quote", + "syn 1.0.109", +] diff --git a/pkgs/by-name/gi/gitbutler/package.nix b/pkgs/by-name/gi/gitbutler/package.nix new file mode 100644 index 0000000000000..a986af79763da --- /dev/null +++ b/pkgs/by-name/gi/gitbutler/package.nix @@ -0,0 +1,177 @@ +{ + lib, + rustPlatform, + buildGoModule, + stdenv, + fetchFromGitHub, + pnpm_9, + wrapGAppsHook3, + cargo-tauri, + darwin, + desktop-file-utils, + esbuild, + git, + glib-networking, + jq, + nodejs, + pkg-config, + libsoup, + moreutils, + openssl, + webkitgtk, + nix-update-script, +}: +rustPlatform.buildRustPackage rec { + pname = "gitbutler"; + version = "0.12.2"; + + src = fetchFromGitHub { + owner = "gitbutlerapp"; + repo = "gitbutler"; + rev = "release/${version}"; + hash = "sha256-m2hvcnY2h4DYtM4ME+dxmwnmUh768CHSoAq5VsKl6Sk="; + }; + + # deactivate the upstream updater in tauri configuration + # TODO: use `tauri build`'s `--config` flag with the release configuration instead of manually merging + # them. it doesn't seem to like using paths currently, even though it should. + postPatch = '' + jq --slurp ".[0] * .[1] | .tauri.updater.active = false" crates/gitbutler-tauri/tauri.conf{,.release}.json | sponge crates/gitbutler-tauri/tauri.conf.json + ''; + + cargoLock = { + lockFile = ./Cargo.lock; + outputHashes = { + "tauri-plugin-context-menu-0.7.1" = "sha256-vKfq20hrFLmfoXO94D8HwAE3UdGcuqVZf3+tOBhLqj0="; + "tauri-plugin-log-0.0.0" = "sha256-Mf2/cnKotd751ZcSHfiSLNe2nxBfo4dMBdoCwQhe7yI="; + }; + }; + + pnpmDeps = pnpm_9.fetchDeps { + inherit pname version src; + hash = "sha256-+4SPDvhpvR1bjwTcyLO3HeBuZGL3P03OaEnOvcX9t9c="; + }; + + nativeBuildInputs = [ + cargo-tauri + desktop-file-utils + jq + moreutils + nodejs + pkg-config + pnpm_9.configHook + wrapGAppsHook3 + ]; + + buildInputs = + [ openssl ] + ++ lib.optionals stdenv.isLinux [ + glib-networking + libsoup + webkitgtk + ] + ++ lib.optionals stdenv.isDarwin ( + with darwin.apple_sdk.frameworks; + [ + AppKit + CoreServices + Security + WebKit + ] + ); + + env = { + # `pnpm`'s `fetchDeps` and `configHook` uses a specific version of pnpm, not upstream's + COREPACK_ENABLE_STRICT = 0; + + # we depend on nightly features + RUSTC_BOOTSTRAP = 1; + + # we also need to have `tracing` support in `tokio` for `console-subscriber` + RUSTFLAGS = "--cfg tokio_unstable"; + + tauriBundle = + { + Linux = "deb"; + Darwin = "app"; + } + .${stdenv.hostPlatform.uname.system} + or (throw "No tauri bundle available for ${stdenv.hostPlatform.uname.system}"); + + ESBUILD_BINARY_PATH = lib.getExe ( + esbuild.override { + buildGoModule = + args: + buildGoModule ( + args + // rec { + version = "0.18.20"; + src = fetchFromGitHub { + owner = "evanw"; + repo = "esbuild"; + rev = "v${version}"; + hash = "sha256-mED3h+mY+4H465m02ewFK/BgA1i/PQ+ksUNxBlgpUoI="; + }; + + vendorHash = "sha256-+BfxCyg0KkDQpHt/wycy/8CTG6YBA/VJvJFhhzUnSiQ="; + } + ); + } + ); + }; + + buildPhase = '' + runHook preBuild + + cargo tauri build --bundles "$tauriBundle" + + runHook postBuild + ''; + + installPhase = + '' + runHook preInstall + '' + + lib.optionalString stdenv.isDarwin '' + mkdir -p $out/bin + cp -r target/release/bundle/macos $out/Applications + mv $out/Applications/GitButler.app/Contents/MacOS/GitButler $out/bin/git-butler + ln -s $out/bin/git-butler $out/Applications/GitButler.app/Contents/MacOS/GitButler + '' + + lib.optionalString stdenv.isLinux '' + cp -r target/release/bundle/"$tauriBundle"/*/data/usr $out + + desktop-file-edit \ + --set-comment "A Git client for simultaneous branches on top of your existing workflow." \ + --set-key="Keywords" --set-value="git;" \ + --set-key="StartupWMClass" --set-value="GitButler" \ + $out/share/applications/git-butler.desktop + '' + + '' + runHook postInstall + ''; + + # the `gitbutler-git` crate's checks do not support release mode + checkType = "debug"; + + nativeCheckInputs = [ git ]; + + passthru = { + updateScript = nix-update-script { + extraArgs = [ + "--version-regex" + "release/(.*)" + ]; + }; + }; + + meta = { + description = "Git client for simultaneous branches on top of your existing workflow"; + homepage = "https://gitbutler.com"; + changelog = "https://github.com/gitbutlerapp/gitbutler/releases/tag/release/${version}"; + mainProgram = "git-butler"; + license = lib.licenses.fsl11Mit; + maintainers = with lib.maintainers; [ getchoo ]; + platforms = lib.platforms.linux ++ lib.platforms.darwin; + }; +} diff --git a/pkgs/by-name/gi/gitlab-ci-local/package.nix b/pkgs/by-name/gi/gitlab-ci-local/package.nix index 8752b7cdf2ff4..027036915a5b2 100644 --- a/pkgs/by-name/gi/gitlab-ci-local/package.nix +++ b/pkgs/by-name/gi/gitlab-ci-local/package.nix @@ -6,16 +6,16 @@ buildNpmPackage rec { pname = "gitlab-ci-local"; - version = "4.50.1"; + version = "4.51.0"; src = fetchFromGitHub { owner = "firecow"; repo = "gitlab-ci-local"; rev = version; - hash = "sha256-nlxYZY8SntMffmKiDpp/m8GfsB4lp+T8UoUPOLQlcC8="; + hash = "sha256-D1zviTj7isAuEyzRYEyjq4sx+jo/U3ZQZLFr35/1ZNo="; }; - npmDepsHash = "sha256-uDhot9kGmF717itia6hyx0xZkyMYDpH7BmGl12xSJyI="; + npmDepsHash = "sha256-ocrSOPLbWkU0LBpWAdl54hWr+7gE3z2sy8lJilGsExo="; postPatch = '' # remove cleanup which runs git commands diff --git a/pkgs/by-name/gn/gnome-feeds/package.nix b/pkgs/by-name/gn/gnome-feeds/package.nix new file mode 100644 index 0000000000000..e502a17bdbed1 --- /dev/null +++ b/pkgs/by-name/gn/gnome-feeds/package.nix @@ -0,0 +1,95 @@ +{ + lib, + python3, + + fetchFromGitLab, + fetchpatch, + + appstream, + gobject-introspection, + meson, + ninja, + pkg-config, + blueprint-compiler, + wrapGAppsHook4, + + glib-networking, + libadwaita, + webkitgtk_6_0, +}: + +python3.pkgs.buildPythonApplication rec { + pname = "gnome-feeds"; + version = "2.2.0"; + pyproject = false; + + src = fetchFromGitLab { + domain = "gitlab.gnome.org"; + owner = "World"; + repo = "gfeeds"; + rev = version; + hash = "sha256-XKwRFjz4ocH01mj8KshLGmGxbm/uvDiyYRf65KL0UFw="; + }; + + patches = [ + # both patches needed to built with newer blueprint-compiler + (fetchpatch { + name = "fix-for-blueprint-0.8.patch"; + url = "https://gitlab.gnome.org/World/gfeeds/-/commit/cfe860f44f685be302e2ad9f30b55bab08e078ce.patch"; + hash = "sha256-exkq9KykB60/X8u3+T1/sShrhGP8BvNkaBWPzm2mchc="; + }) + (fetchpatch { + name = "upgrade-blueprint-0.8-syntax.patch"; + url = "https://gitlab.gnome.org/World/gfeeds/-/commit/d099fda0c62e338080061683a154f711cc487b30.patch"; + hash = "sha256-M6QLRTj+CItk3XPDeexf3/+B1YHJoHsTjwdE6iw1xjM="; + }) + ]; + + nativeBuildInputs = [ + appstream + gobject-introspection + meson + ninja + pkg-config + blueprint-compiler + wrapGAppsHook4 + ]; + + buildInputs = [ + glib-networking + libadwaita + webkitgtk_6_0 + ]; + + dependencies = with python3.pkgs; [ + beautifulsoup4 + humanize + python-dateutil + syndication-domination + python-magic + pillow + pygments + pygobject3 + readability-lxml + pytz + requests + ]; + + dontWrapGApps = true; + + preFixup = '' + makeWrapperArgs+=("''${gappsWrapperArgs[@]}") + ''; + + meta = { + description = "RSS/Atom feed reader for GNOME"; + mainProgram = "gfeeds"; + homepage = "https://gitlab.gnome.org/World/gfeeds"; + license = lib.licenses.gpl3Plus; + maintainers = with lib.maintainers; [ + pbogdan + aleksana + ]; + platforms = lib.platforms.linux; + }; +} diff --git a/pkgs/by-name/gn/gnome-online-accounts-gtk/package.nix b/pkgs/by-name/gn/gnome-online-accounts-gtk/package.nix index d8dbbc5806b27..f10af60422c1a 100644 --- a/pkgs/by-name/gn/gnome-online-accounts-gtk/package.nix +++ b/pkgs/by-name/gn/gnome-online-accounts-gtk/package.nix @@ -14,13 +14,13 @@ stdenv.mkDerivation (finalAttrs: { pname = "gnome-online-accounts-gtk"; - version = "3.50.2"; + version = "3.50.3"; src = fetchFromGitHub { owner = "xapp-project"; repo = "gnome-online-accounts-gtk"; rev = finalAttrs.version; - hash = "sha256-6yGesg/L/9syX990uDuw5Or/uEQ8DGPQYiCRRw4OMzY="; + hash = "sha256-peElSkGl2dYeJmMUeB+xDoOY3MhHs7IsIQYr0iJZP58="; }; nativeBuildInputs = [ diff --git a/pkgs/by-name/go/google-chrome/package.nix b/pkgs/by-name/go/google-chrome/package.nix index 283c61e90e58b..15b444728b26e 100644 --- a/pkgs/by-name/go/google-chrome/package.nix +++ b/pkgs/by-name/go/google-chrome/package.nix @@ -64,11 +64,11 @@ let in stdenv.mkDerivation (finalAttrs: { pname = "google-chrome"; - version = "126.0.6478.61"; + version = "126.0.6478.114"; src = fetchurl { url = "https://dl.google.com/linux/chrome/deb/pool/main/g/google-chrome-stable/google-chrome-stable_${finalAttrs.version}-1_amd64.deb"; - hash = "sha256-L7gBl4SMHIq0x+GZiaaK5Dxs+UJDandz0xYET7YO73o="; + hash = "sha256-CGqo6XnUwndOjODOxy+TCGxDXbAz4EwkZMOl7ZLFsAc="; }; nativeBuildInputs = [ patchelf makeWrapper ]; diff --git a/pkgs/by-name/go/gosmee/package.nix b/pkgs/by-name/go/gosmee/package.nix index eeb9bf97499cd..5ae4b5d8dc8b2 100644 --- a/pkgs/by-name/go/gosmee/package.nix +++ b/pkgs/by-name/go/gosmee/package.nix @@ -6,13 +6,13 @@ buildGoModule rec { pname = "gosmee"; - version = "0.22.0"; + version = "0.22.1"; src = fetchFromGitHub { owner = "chmouel"; repo = "gosmee"; rev = "v${version}"; - sha256 = "sha256-PP+N8BihgSvYL7yHlBJOK4zWkuM75iaGc7Gld+c0D6Y="; + sha256 = "sha256-UnGzPkbw7x8l1+9xEXFiJZFzJT5yu7MCgPKkKzaFqkk="; }; vendorHash = null; diff --git a/pkgs/servers/monitoring/grafana-reporter/default.nix b/pkgs/by-name/gr/grafana-reporter/package.nix index 1b4d0d04fa302..309ce2ecba03e 100644 --- a/pkgs/servers/monitoring/grafana-reporter/default.nix +++ b/pkgs/by-name/gr/grafana-reporter/package.nix @@ -1,33 +1,41 @@ -{ lib, buildGoPackage, fetchFromGitHub, tetex, makeWrapper }: - -with lib; - -buildGoPackage rec { +{ lib +, buildGoModule +, fetchFromGitHub +, tetex +, makeWrapper +}: +buildGoModule rec { pname = "reporter"; version = "2.3.1"; - rev = "v${version}"; - - goPackagePath = "github.com/IzakMarais/reporter"; - - nativeBuildInputs = [ makeWrapper ]; src = fetchFromGitHub { - inherit rev; + rev = "v${version}"; owner = "IzakMarais"; repo = "reporter"; sha256 = "sha256-lsraJwx56I2Gn8CePWUlQu1qdMp78P4xwPzLxetYUcw="; }; + nativeBuildInputs = [ makeWrapper ]; + + vendorHash = null; + + postPatch = '' + go mod init github.com/IzakMarais/reporter + ''; + postInstall = '' wrapProgram $out/bin/grafana-reporter \ - --prefix PATH : ${makeBinPath [ tetex ]} + --prefix PATH : ${lib.makeBinPath [ tetex ]} ''; + # Testing library used had a breaking API change and upstream didn't adapt. + doCheck = false; + meta = { description = "PDF report generator from a Grafana dashboard"; mainProgram = "grafana-reporter"; homepage = "https://github.com/IzakMarais/reporter"; - license = licenses.mit; - maintainers = with maintainers; [ disassembler ]; + license = lib.licenses.mit; + maintainers = [ lib.maintainers.disassembler ]; }; } diff --git a/pkgs/by-name/gr/graphqlmaker/package.nix b/pkgs/by-name/gr/graphqlmaker/package.nix new file mode 100644 index 0000000000000..265b63112dfe5 --- /dev/null +++ b/pkgs/by-name/gr/graphqlmaker/package.nix @@ -0,0 +1,33 @@ +{ + lib, + buildGoModule, + fetchFromGitHub, +}: + +buildGoModule rec { + pname = "graphqlmaker"; + version = "0-unstable-2024-05-18"; + + src = fetchFromGitHub { + owner = "xssdoctor"; + repo = "graphqlMaker"; + rev = "ff884ce39156d8458da35c0b0b5d7eb1e1146bb5"; + hash = "sha256-H3AFCS1WoeVXUdXBV1JKrGIraJP/ql6XG++PxmWUico="; + }; + + vendorHash = "sha256-1mDOqTsQ3kHs3MEWlRcdqhjIRul7um2mfBAxObhoSlE="; + + ldflags = [ + "-s" + "-w" + ]; + + meta = with lib; { + description = "Tool to find graphql queries in Javascript files"; + homepage = "https://github.com/xssdoctor/graphqlMaker"; + # https://github.com/xssdoctor/graphqlMaker/issues/1 + license = licenses.unfree; + maintainers = with maintainers; [ fab ]; + mainProgram = "graphqlMaker"; + }; +} diff --git a/pkgs/by-name/ha/hatsu/package.nix b/pkgs/by-name/ha/hatsu/package.nix index ec88f6aea5bba..65759ec9ec3f7 100644 --- a/pkgs/by-name/ha/hatsu/package.nix +++ b/pkgs/by-name/ha/hatsu/package.nix @@ -8,16 +8,16 @@ }: rustPlatform.buildRustPackage rec { pname = "hatsu"; - version = "0.2.0"; + version = "0.2.1"; src = fetchFromGitHub { owner = "importantimport"; repo = "hatsu"; rev = "v${version}"; - hash = "sha256-gBzhuV0SDmNwl5PkpdGxkMBn5m4vEXfv23WK7+ZzQs8="; + hash = "sha256-4x41Ez2Rq4Bs39LN4qRluDieHx+9bS+GCjvS/cQK84Y="; }; - cargoHash = "sha256-A2tl0jjKODA/qodxkIe/3V4ZDGV4X0myiduJsLtd7r0="; + cargoHash = "sha256-hOQ8/m4TY18ZFmLFxxnXUX1yr52tKNmebx6H0uIIGUo="; nativeBuildInputs = [ cmake pkg-config ]; buildInputs = [ openssl ]; diff --git a/pkgs/by-name/he/hednsextractor/package.nix b/pkgs/by-name/he/hednsextractor/package.nix new file mode 100644 index 0000000000000..8f8fb9f4f6055 --- /dev/null +++ b/pkgs/by-name/he/hednsextractor/package.nix @@ -0,0 +1,33 @@ +{ + lib, + buildGoModule, + fetchFromGitHub, +}: + +buildGoModule rec { + pname = "hednsextractor"; + version = "1.0.7"; + + src = fetchFromGitHub { + owner = "HuntDownProject"; + repo = "HEDnsExtractor"; + rev = "refs/tags/v${version}"; + hash = "sha256-Uj5TNQ+X0+ip1DcLanMmFzr5ROuXhuZJSPF9tile+ZQ="; + }; + + vendorHash = "sha256-8yD/yHSqesyS71YeRBv4ARyXyIbTcan7YjBeKBrg0Vc="; + + ldflags = [ + "-s" + "-w" + ]; + + meta = with lib; { + description = "Tool suite for hunting suspicious targets, expose domains and phishing discovery"; + homepage = "https://github.com/HuntDownProject/HEDnsExtractor"; + changelog = "https://github.com/HuntDownProject/HEDnsExtractor/releases/tag/v${version}"; + license = licenses.gpl3Only; + maintainers = with maintainers; [ fab ]; + mainProgram = "hednsextractor"; + }; +} diff --git a/pkgs/by-name/he/hermitcli/package.nix b/pkgs/by-name/he/hermitcli/package.nix index 6c59414cfac76..05a287a5db3dc 100644 --- a/pkgs/by-name/he/hermitcli/package.nix +++ b/pkgs/by-name/he/hermitcli/package.nix @@ -5,13 +5,13 @@ buildGoModule rec { pname = "hermit"; - version = "0.39.2"; + version = "0.39.3"; src = fetchFromGitHub { rev = "v${version}"; owner = "cashapp"; repo = "hermit"; - hash = "sha256-By6ZWOiv1A7wghIGD6+oGoBic9puo4M+DzsM/7fOpy8="; + hash = "sha256-Cp96OOAEwBz83Fsex7DeI5LSp1gBhP8VP0I6bJAZC4U="; }; vendorHash = "sha256-vEv/sciynvxQE7KpxqpaSO1p5R3xYBK6o4EeuJ2JYmg="; diff --git a/pkgs/by-name/hi/hifile/package.nix b/pkgs/by-name/hi/hifile/package.nix index 43f6dfe82fa5d..8b9099bf55e14 100644 --- a/pkgs/by-name/hi/hifile/package.nix +++ b/pkgs/by-name/hi/hifile/package.nix @@ -1,12 +1,12 @@ { lib, appimageTools, fetchurl }: let - version = "0.9.9.12"; + version = "0.9.9.13"; pname = "hifile"; src = fetchurl { url = "https://www.hifile.app/files/HiFile-${version}.AppImage"; - hash = "sha256-/1/5n+YDO1IhkUAjRIlr2NnNoU30u3gWbvhTLbN70q0="; + hash = "sha256-nZlPdl7D0UWtm8mFz4IDqmvGeBVc7mbeUpzyHrdDQtk="; }; appimageContents = appimageTools.extractType2 { diff --git a/pkgs/by-name/ho/home-manager/package.nix b/pkgs/by-name/ho/home-manager/package.nix index b12d6420c1b95..fff749ff29e4b 100644 --- a/pkgs/by-name/ho/home-manager/package.nix +++ b/pkgs/by-name/ho/home-manager/package.nix @@ -16,14 +16,14 @@ stdenvNoCC.mkDerivation (finalAttrs: { pname = "home-manager"; - version = "0-unstable-2024-06-13"; + version = "0-unstable-2024-06-22"; src = fetchFromGitHub { name = "home-manager-source"; owner = "nix-community"; repo = "home-manager"; - rev = "8d5e27b4807d25308dfe369d5a923d87e7dbfda3"; - hash = "sha256-abBpj2VU8p6qlRzTU8o22q68MmOaZ4v8zZ4UlYl5YRU="; + rev = "cd886711998fe5d9ff7979fdd4b4cbd17b1f1511"; + hash = "sha256-aOKd8+mhBsLQChCu1mn/W5ww79ta5cXVE59aJFrifM8="; }; nativeBuildInputs = [ diff --git a/pkgs/by-name/ht/httping/package.nix b/pkgs/by-name/ht/httping/package.nix new file mode 100644 index 0000000000000..85fcc843ef0f7 --- /dev/null +++ b/pkgs/by-name/ht/httping/package.nix @@ -0,0 +1,71 @@ +{ + cmake, + fetchFromGitHub, + fftw, + gettext, + lib, + libintl, + ncurses, + nix-update-script, + openssl, + stdenv, + testers, +}: + +stdenv.mkDerivation (finalAttrs: { + pname = "httping"; + version = "3.6"; + + src = fetchFromGitHub { + owner = "folkertvanheusden"; + repo = "HTTPing"; + rev = "refs/tags/v${finalAttrs.version}"; + hash = "sha256-lDgQC3VzfcLqMOQSaRZ/znMamAAGYq/9C9bHgI4G7B8="; + }; + + nativeBuildInputs = [ + cmake + gettext + ]; + + buildInputs = [ + fftw + libintl + ncurses + openssl + ]; + + cmakeFlags = [ + (lib.cmakeFeature "CMAKE_BUILD_TYPE" "Release") + ]; + + installPhase = '' + runHook preInstall + install -D httping $out/bin/httping + runHook postInstall + ''; + + passthru = { + tests.version = testers.testVersion { + command = "${lib.getExe finalAttrs.finalPackage} --version"; + package = finalAttrs.finalPackage; + }; + updateScript = nix-update-script { }; + }; + + meta = { + changelog = "https://github.com/folkertvanheusden/HTTPing/releases/tag/v${finalAttrs.version}"; + description = "Ping with HTTP requests"; + homepage = "https://vanheusden.com/httping"; + license = lib.licenses.agpl3Only; + longDescription = '' + Give httping an url, and it'll show you how long it takes to connect, + send a request and retrieve the reply (only the headers). Be aware that + the transmission across the network also takes time! So it measures the + latency of the webserver + network. It supports IPv6. + ''; + mainProgram = "httping"; + maintainers = [ lib.maintainers.anthonyroussel ]; + platforms = lib.platforms.linux; + }; +}) diff --git a/pkgs/by-name/hy/hyprutils/package.nix b/pkgs/by-name/hy/hyprutils/package.nix index f29cb3665fbda..1ad3a925ff323 100644 --- a/pkgs/by-name/hy/hyprutils/package.nix +++ b/pkgs/by-name/hy/hyprutils/package.nix @@ -2,25 +2,34 @@ lib, stdenv, cmake, + pkg-config, + pixman, fetchFromGitHub, }: stdenv.mkDerivation (finalAttrs: { pname = "hyprutils"; - version = "0.1.2"; + version = "0.1.4"; src = fetchFromGitHub { owner = "hyprwm"; repo = "hyprutils"; - rev = "v${finalAttrs.version}"; - hash = "sha256-8KvVqtApNt4FWTdn1TqVvw00rpqyG9UuUPA2ilPVD1U="; + rev = "refs/tags/v${finalAttrs.version}"; + hash = "sha256-CqRZne63BpYlPd/i8lXV0UInUt59oKogiwdVtBRHt60="; }; - nativeBuildInputs = [ cmake ]; + nativeBuildInputs = [ + cmake + pkg-config + ]; - outputs = [ "out" "dev" ]; + buildInputs = [ + pixman + ]; - doCheck = false; + outputs = ["out" "dev"]; + + cmakeBuildType = "RelWithDebInfo"; meta = { homepage = "https://github.com/hyprwm/hyprutils"; diff --git a/pkgs/by-name/ic/ice-bar/package.nix b/pkgs/by-name/ic/ice-bar/package.nix new file mode 100644 index 0000000000000..95b1170f2a859 --- /dev/null +++ b/pkgs/by-name/ic/ice-bar/package.nix @@ -0,0 +1,41 @@ +{ + lib, + stdenvNoCC, + unzip, + fetchurl, + nix-update-script, +}: + +stdenvNoCC.mkDerivation (finalAttrs: { + pname = "ice-bar"; + version = "0.9.0"; + + src = fetchurl { + url = "https://github.com/jordanbaird/Ice/releases/download/${finalAttrs.version}/Ice.zip"; + hash = "sha256-MvkJRP8Stz9VIK3vBnWezVKq2KkPfUa/NUBxJtYzHhU="; + }; + + sourceRoot = "."; + + nativeBuildInputs = [ unzip ]; + + installPhase = '' + runHook preInstall + + mkdir -p "$out/Applications" + cp -r *.app "$out/Applications" + + runHook postInstall + ''; + + passthru.updateScript = nix-update-script { }; + + meta = { + description = "Powerful menu bar manager for macOS"; + homepage = "https://icemenubar.app/"; + license = lib.licenses.mit; + maintainers = with lib.maintainers; [ donteatoreo ]; + platforms = lib.platforms.darwin; + sourceProvenance = with lib.sourceTypes; [ binaryNativeCode ]; + }; +}) diff --git a/pkgs/by-name/im/imposm/package.nix b/pkgs/by-name/im/imposm/package.nix index e52cac5634cb0..38946acab0f60 100644 --- a/pkgs/by-name/im/imposm/package.nix +++ b/pkgs/by-name/im/imposm/package.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "imposm"; - version = "0.12.0"; + version = "0.13.2"; src = fetchFromGitHub { owner = "omniscale"; repo = "imposm3"; rev = "v${version}"; - hash = "sha256-xX4cV/iU7u/g9n7dtkkkCtNOPZK5oyprNHGDUuW+ees="; + hash = "sha256-KIQA2OXJldM+LJw5vv63vppE7J08gWjJzAc/GLnrImA="; }; vendorHash = null; diff --git a/pkgs/by-name/it/itools/package.nix b/pkgs/by-name/it/itools/package.nix new file mode 100644 index 0000000000000..85cede0eb9007 --- /dev/null +++ b/pkgs/by-name/it/itools/package.nix @@ -0,0 +1,41 @@ +{ lib +, stdenv +, fetchFromGitHub +, autoreconfHook +, pkgs +, pkg-config +, perl +, libitl +}: + +stdenv.mkDerivation (finalAttrs: { + pname = "itools"; + version = "1.1"; + + nativeBuildInputs = [ pkg-config autoreconfHook ]; + buildInputs = [ libitl perl ]; + + outputs = [ "out" "man" ]; + + src = fetchFromGitHub { + owner = "arabeyes-org"; + repo = "itools"; + rev = finalAttrs.version; + hash = "sha256-DxTZaq2SlEmy9k7iAdjctpPkk+2rIaF+xEcfXj/ERWw="; + }; + + meta = { + description = "Islamic command-line tools for prayer times and hijri dates"; + longDescription = '' + The itools package is a set of user friendly applications utilizing Arabeyes' ITL library. + + The package addresses two main areas - hijri date and prayertime calculation. The package + is envisioned to mimick the development of the underlying ITL library and is meant to + always give the end-user a simple means to access its functions. + ''; + homepage = "https://www.arabeyes.org/ITL"; + license = lib.licenses.gpl2Only; + platforms = lib.platforms.all; + maintainers = with lib.maintainers; [ amyipdev ]; + }; +}) diff --git a/pkgs/by-name/ja/jan/package.nix b/pkgs/by-name/ja/jan/package.nix index 31452d3e9b456..1be4d3c5bc8c2 100644 --- a/pkgs/by-name/ja/jan/package.nix +++ b/pkgs/by-name/ja/jan/package.nix @@ -5,10 +5,10 @@ let pname = "jan"; - version = "0.5.0"; + version = "0.5.1"; src = fetchurl { url = "https://github.com/janhq/jan/releases/download/v${version}/jan-linux-x86_64-${version}.AppImage"; - hash = "sha256-yU2J9RctID/n0INAFyHbdbaHvWJm1384p1Za3MCJuL0="; + hash = "sha256-6AbV7rly4dLNX5xMKxitt5kli3xs5Hx0Vy+/HPsyEPc="; }; appimageContents = appimageTools.extractType2 { inherit pname version src; }; diff --git a/pkgs/by-name/ja/jasp-desktop/modules.nix b/pkgs/by-name/ja/jasp-desktop/modules.nix index 1660daa764c11..379b06234c40b 100644 --- a/pkgs/by-name/ja/jasp-desktop/modules.nix +++ b/pkgs/by-name/ja/jasp-desktop/modules.nix @@ -33,6 +33,9 @@ let env.INCLUDE_DIR = "../inst/include/jaspColumnEncoder"; + # necessary for R 4.4.0 + hardeningDisable = [ "format" ]; + postPatch = '' mkdir -p inst/include cp -r --no-preserve=all ${jaspColumnEncoder-src} inst/include/jaspColumnEncoder diff --git a/pkgs/by-name/ja/jasp-desktop/package.nix b/pkgs/by-name/ja/jasp-desktop/package.nix index 7c78e869caa9a..1b33536dc7d45 100644 --- a/pkgs/by-name/ja/jasp-desktop/package.nix +++ b/pkgs/by-name/ja/jasp-desktop/package.nix @@ -66,6 +66,9 @@ stdenv.mkDerivation { "-DCUSTOM_R_PATH=${customREnv}" ]; + # necessary for R 4.4.0 + hardeningDisable = [ "format" ]; + nativeBuildInputs = [ cmake ninja diff --git a/pkgs/development/compilers/jwasm/default.nix b/pkgs/by-name/jw/jwasm/package.nix index a8ffc3164a662..8a1390aac9f5c 100644 --- a/pkgs/development/compilers/jwasm/default.nix +++ b/pkgs/by-name/jw/jwasm/package.nix @@ -1,17 +1,18 @@ -{ lib -, stdenv -, fetchFromGitHub +{ + lib, + fetchFromGitHub, + stdenv, }: stdenv.mkDerivation (finalAttrs: { pname = "jwasm"; - version = "2.17"; + version = "2.18"; src = fetchFromGitHub { owner = "Baron-von-Riedesel"; repo = "JWasm"; rev = "v${finalAttrs.version}"; - hash = "sha256-22eNtHXF+RQT4UbXIVjn1JP/s6igp5O1oQT7sVl7c1U="; + hash = "sha256-xbiyGBTzIkAfUy45JdAl77gbvArzVUQNPOxa+H2uGFo="; }; outputs = [ "out" "doc" ]; @@ -31,13 +32,13 @@ stdenv.mkDerivation (finalAttrs: { -t $doc/share/doc/jwasm/ ''; - meta = with lib; { + meta = { homepage = "https://github.com/Baron-von-Riedesel/JWasm/"; description = "MASM-compatible x86 assembler"; - changelog = "https://github.com/Baron-von-Riedesel/JWasm/releases/tag/v${finalAttrs.version}"; - license = licenses.gpl2Plus; - maintainers = with maintainers; [ AndersonTorres ]; - platforms = platforms.unix; + changelog = "https://github.com/Baron-von-Riedesel/JWasm/releases/tag/${finalAttrs.src.rev}"; + license = lib.licenses.gpl2Plus; + maintainers = with lib.maintainers; [ AndersonTorres ]; + platforms = lib.platforms.unix; broken = stdenv.isDarwin; }; }) diff --git a/pkgs/by-name/kc/kchat/package.nix b/pkgs/by-name/kc/kchat/package.nix index 1eaf7650b6a18..22a3496f6a81d 100644 --- a/pkgs/by-name/kc/kchat/package.nix +++ b/pkgs/by-name/kc/kchat/package.nix @@ -5,12 +5,12 @@ appimageTools.wrapType2 rec { pname = "kchat"; - version = "2.4.0"; + version = "3.3.1"; src = fetchurl { url = "https://download.storage5.infomaniak.com/kchat/kchat-desktop-${version}-linux-x86_64.AppImage"; name = "kchat-${version}.AppImage"; - hash = "sha256-8mkkHod7iBhHVAL/vQCVnmwVlPGikdHhtiEaFVIayrU="; + hash = "sha256-f9wWgZSPSMP7bLZGfR5F6l/eAVHVhRmF1c7S6/qLgIA="; }; extraInstallCommands = @@ -24,7 +24,8 @@ appimageTools.wrapType2 rec { cp -r ${contents}/usr/* "$out" cp "${contents}/kchat-desktop.desktop" "$out/share/applications/" mv "$out/bin/kchat" "$out/bin/${meta.mainProgram}" || true - substituteInPlace $out/share/applications/kchat-desktop.desktop --replace 'Exec=AppRun' 'Exec=${meta.mainProgram}' + install -m 444 -D ${contents}/kchat-desktop.desktop $out/share/applications/kchat-desktop.desktop + substituteInPlace $out/share/applications/kchat-desktop.desktop --replace-fail 'Exec=AppRun' 'Exec=${meta.mainProgram}' ''; meta = with lib; { diff --git a/pkgs/by-name/ke/keym/package.nix b/pkgs/by-name/ke/keym/package.nix new file mode 100644 index 0000000000000..387706b207cef --- /dev/null +++ b/pkgs/by-name/ke/keym/package.nix @@ -0,0 +1,34 @@ +{ lib +, stdenv +, fetchFromGitHub +, libX11 +, libXtst +, libXi +}: + +stdenv.mkDerivation { + pname = "keym"; + version = "unstable-2022-07-10"; + + src = fetchFromGitHub { + owner = "cwkx"; + repo = "keym"; + rev = "67a6d39d45e17221353e06c39283b5636b46d25c"; + hash = "sha256-v2eS7un2ABnpWBwuKq+0CeLX8ivtlNUjM2jRboKumOE="; + }; + + buildInputs = [ libX11 libXtst libXi ]; + + makeFlags = [ + "PREFIX=$(out)" + ]; + + meta = with lib; { + homepage = "https://github.com/cwkx/keym"; + description = "C tool to control mouse with keyboard for X11"; + license = licenses.mit; + platforms = platforms.linux; + mainProgram = "keym"; + maintainers = with maintainers; [ CompileTime ]; + }; +} diff --git a/pkgs/by-name/ko/kor/package.nix b/pkgs/by-name/ko/kor/package.nix index 1ab029e08dc01..0f39d9e2049f7 100644 --- a/pkgs/by-name/ko/kor/package.nix +++ b/pkgs/by-name/ko/kor/package.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "kor"; - version = "0.4.2"; + version = "0.5.0"; src = fetchFromGitHub { owner = "yonahd"; repo = pname; rev = "v${version}"; - hash = "sha256-fyVMRHDzP7od+cwC01vNP/TOiDctD8E0y8uNWtgiEeA="; + hash = "sha256-5x0Zyk4gPMKcZtpgT0QbIm6NeWX+uJwT2NM+yS2oC3o="; }; - vendorHash = "sha256-NPmsXS7P+pCF97N8x3nQhCRoHJLMO5plNtcUqxxexVE="; + vendorHash = "sha256-9aZy1i0VrDRySt5A5aQHBXa0mPgD+rsyeqQrd6snWKc="; preCheck = '' HOME=$(mktemp -d) diff --git a/pkgs/by-name/la/laravel/composer.lock b/pkgs/by-name/la/laravel/composer.lock index f4a977029e47b..e0c1899880537 100644 --- a/pkgs/by-name/la/laravel/composer.lock +++ b/pkgs/by-name/la/laravel/composer.lock @@ -168,16 +168,16 @@ }, { "name": "illuminate/collections", - "version": "v11.8.0", + "version": "v11.11.0", "source": { "type": "git", "url": "https://github.com/illuminate/collections.git", - "reference": "dad22e648ae0f4973470d82b4ae5f809540a87ff" + "reference": "176f39271b5f85bee3c4bf797d1e95102d55e12b" }, "dist": { "type": "zip", - "url": "https://api.github.com/repos/illuminate/collections/zipball/dad22e648ae0f4973470d82b4ae5f809540a87ff", - "reference": "dad22e648ae0f4973470d82b4ae5f809540a87ff", + "url": "https://api.github.com/repos/illuminate/collections/zipball/176f39271b5f85bee3c4bf797d1e95102d55e12b", + "reference": "176f39271b5f85bee3c4bf797d1e95102d55e12b", "shasum": "" }, "require": { @@ -219,11 +219,11 @@ "issues": "https://github.com/laravel/framework/issues", "source": "https://github.com/laravel/framework" }, - "time": "2024-05-20T13:26:28+00:00" + "time": "2024-06-11T13:32:31+00:00" }, { "name": "illuminate/conditionable", - "version": "v11.8.0", + "version": "v11.11.0", "source": { "type": "git", "url": "https://github.com/illuminate/conditionable.git", @@ -269,16 +269,16 @@ }, { "name": "illuminate/contracts", - "version": "v11.8.0", + "version": "v11.11.0", "source": { "type": "git", "url": "https://github.com/illuminate/contracts.git", - "reference": "8782f75e80ab3e6036842d24dbeead34a16f3a79" + "reference": "86c1331d0b06c59ca21723d8bfc9faaa19430b46" }, "dist": { "type": "zip", - "url": "https://api.github.com/repos/illuminate/contracts/zipball/8782f75e80ab3e6036842d24dbeead34a16f3a79", - "reference": "8782f75e80ab3e6036842d24dbeead34a16f3a79", + "url": "https://api.github.com/repos/illuminate/contracts/zipball/86c1331d0b06c59ca21723d8bfc9faaa19430b46", + "reference": "86c1331d0b06c59ca21723d8bfc9faaa19430b46", "shasum": "" }, "require": { @@ -313,20 +313,20 @@ "issues": "https://github.com/laravel/framework/issues", "source": "https://github.com/laravel/framework" }, - "time": "2024-04-17T14:09:55+00:00" + "time": "2024-05-21T17:42:34+00:00" }, { "name": "illuminate/filesystem", - "version": "v11.8.0", + "version": "v11.11.0", "source": { "type": "git", "url": "https://github.com/illuminate/filesystem.git", - "reference": "56d387455019a0b3c19b76dc7ccb70e337ee7c4b" + "reference": "3a09c14df1085de6e81cecb8b5df2031c8872ca2" }, "dist": { "type": "zip", - "url": "https://api.github.com/repos/illuminate/filesystem/zipball/56d387455019a0b3c19b76dc7ccb70e337ee7c4b", - "reference": "56d387455019a0b3c19b76dc7ccb70e337ee7c4b", + "url": "https://api.github.com/repos/illuminate/filesystem/zipball/3a09c14df1085de6e81cecb8b5df2031c8872ca2", + "reference": "3a09c14df1085de6e81cecb8b5df2031c8872ca2", "shasum": "" }, "require": { @@ -380,11 +380,11 @@ "issues": "https://github.com/laravel/framework/issues", "source": "https://github.com/laravel/framework" }, - "time": "2024-03-29T08:58:54+00:00" + "time": "2024-05-30T15:47:53+00:00" }, { "name": "illuminate/macroable", - "version": "v11.8.0", + "version": "v11.11.0", "source": { "type": "git", "url": "https://github.com/illuminate/macroable.git", @@ -430,16 +430,16 @@ }, { "name": "illuminate/support", - "version": "v11.8.0", + "version": "v11.11.0", "source": { "type": "git", "url": "https://github.com/illuminate/support.git", - "reference": "8deb8ba65ed7dc4e3f7b9b64ab70456250454824" + "reference": "142c5f8a3931b7a7021ab63175ae1948743fac04" }, "dist": { "type": "zip", - "url": "https://api.github.com/repos/illuminate/support/zipball/8deb8ba65ed7dc4e3f7b9b64ab70456250454824", - "reference": "8deb8ba65ed7dc4e3f7b9b64ab70456250454824", + "url": "https://api.github.com/repos/illuminate/support/zipball/142c5f8a3931b7a7021ab63175ae1948743fac04", + "reference": "142c5f8a3931b7a7021ab63175ae1948743fac04", "shasum": "" }, "require": { @@ -500,20 +500,20 @@ "issues": "https://github.com/laravel/framework/issues", "source": "https://github.com/laravel/framework" }, - "time": "2024-05-21T15:24:23+00:00" + "time": "2024-06-18T17:23:00+00:00" }, { "name": "laravel/prompts", - "version": "v0.1.22", + "version": "v0.1.24", "source": { "type": "git", "url": "https://github.com/laravel/prompts.git", - "reference": "37f94de71758dbfbccc9d299b0e5eb76e02a40f5" + "reference": "409b0b4305273472f3754826e68f4edbd0150149" }, "dist": { "type": "zip", - "url": "https://api.github.com/repos/laravel/prompts/zipball/37f94de71758dbfbccc9d299b0e5eb76e02a40f5", - "reference": "37f94de71758dbfbccc9d299b0e5eb76e02a40f5", + "url": "https://api.github.com/repos/laravel/prompts/zipball/409b0b4305273472f3754826e68f4edbd0150149", + "reference": "409b0b4305273472f3754826e68f4edbd0150149", "shasum": "" }, "require": { @@ -556,22 +556,22 @@ "description": "Add beautiful and user-friendly forms to your command-line applications.", "support": { "issues": "https://github.com/laravel/prompts/issues", - "source": "https://github.com/laravel/prompts/tree/v0.1.22" + "source": "https://github.com/laravel/prompts/tree/v0.1.24" }, - "time": "2024-05-10T19:22:18+00:00" + "time": "2024-06-17T13:58:22+00:00" }, { "name": "nesbot/carbon", - "version": "3.3.1", + "version": "3.5.0", "source": { "type": "git", "url": "https://github.com/briannesbitt/Carbon.git", - "reference": "8ff64b92c1b1ec84fcde9f8bb9ff2ca34cb8a77a" + "reference": "415782b7e48223342f1a616c16c45a95b15b2318" }, "dist": { "type": "zip", - "url": "https://api.github.com/repos/briannesbitt/Carbon/zipball/8ff64b92c1b1ec84fcde9f8bb9ff2ca34cb8a77a", - "reference": "8ff64b92c1b1ec84fcde9f8bb9ff2ca34cb8a77a", + "url": "https://api.github.com/repos/briannesbitt/Carbon/zipball/415782b7e48223342f1a616c16c45a95b15b2318", + "reference": "415782b7e48223342f1a616c16c45a95b15b2318", "shasum": "" }, "require": { @@ -589,13 +589,13 @@ "require-dev": { "doctrine/dbal": "^3.6.3 || ^4.0", "doctrine/orm": "^2.15.2 || ^3.0", - "friendsofphp/php-cs-fixer": "^3.52.1", + "friendsofphp/php-cs-fixer": "^3.57.2", "kylekatarnls/multi-tester": "^2.5.3", "ondrejmirtes/better-reflection": "^6.25.0.4", "phpmd/phpmd": "^2.15.0", "phpstan/extension-installer": "^1.3.1", - "phpstan/phpstan": "^1.10.65", - "phpunit/phpunit": "^10.5.15", + "phpstan/phpstan": "^1.11.2", + "phpunit/phpunit": "^10.5.20", "squizlabs/php_codesniffer": "^3.9.0" }, "bin": [ @@ -664,7 +664,7 @@ "type": "tidelift" } ], - "time": "2024-05-01T06:54:22+00:00" + "time": "2024-06-03T17:25:54+00:00" }, { "name": "psr/clock", @@ -820,16 +820,16 @@ }, { "name": "symfony/clock", - "version": "v7.0.7", + "version": "v7.1.1", "source": { "type": "git", "url": "https://github.com/symfony/clock.git", - "reference": "2008671acb4a30b01c453de193cf9c80549ebda6" + "reference": "3dfc8b084853586de51dd1441c6242c76a28cbe7" }, "dist": { "type": "zip", - "url": "https://api.github.com/repos/symfony/clock/zipball/2008671acb4a30b01c453de193cf9c80549ebda6", - "reference": "2008671acb4a30b01c453de193cf9c80549ebda6", + "url": "https://api.github.com/repos/symfony/clock/zipball/3dfc8b084853586de51dd1441c6242c76a28cbe7", + "reference": "3dfc8b084853586de51dd1441c6242c76a28cbe7", "shasum": "" }, "require": { @@ -874,7 +874,7 @@ "time" ], "support": { - "source": "https://github.com/symfony/clock/tree/v7.0.7" + "source": "https://github.com/symfony/clock/tree/v7.1.1" }, "funding": [ { @@ -890,20 +890,20 @@ "type": "tidelift" } ], - "time": "2024-04-18T09:29:19+00:00" + "time": "2024-05-31T14:57:53+00:00" }, { "name": "symfony/console", - "version": "v7.0.7", + "version": "v7.1.1", "source": { "type": "git", "url": "https://github.com/symfony/console.git", - "reference": "c981e0e9380ce9f146416bde3150c79197ce9986" + "reference": "9b008f2d7b21c74ef4d0c3de6077a642bc55ece3" }, "dist": { "type": "zip", - "url": "https://api.github.com/repos/symfony/console/zipball/c981e0e9380ce9f146416bde3150c79197ce9986", - "reference": "c981e0e9380ce9f146416bde3150c79197ce9986", + "url": "https://api.github.com/repos/symfony/console/zipball/9b008f2d7b21c74ef4d0c3de6077a642bc55ece3", + "reference": "9b008f2d7b21c74ef4d0c3de6077a642bc55ece3", "shasum": "" }, "require": { @@ -967,7 +967,7 @@ "terminal" ], "support": { - "source": "https://github.com/symfony/console/tree/v7.0.7" + "source": "https://github.com/symfony/console/tree/v7.1.1" }, "funding": [ { @@ -983,7 +983,7 @@ "type": "tidelift" } ], - "time": "2024-04-18T09:29:19+00:00" + "time": "2024-05-31T14:57:53+00:00" }, { "name": "symfony/deprecation-contracts", @@ -1054,16 +1054,16 @@ }, { "name": "symfony/finder", - "version": "v7.0.7", + "version": "v7.1.1", "source": { "type": "git", "url": "https://github.com/symfony/finder.git", - "reference": "4d58f0f4fe95a30d7b538d71197135483560b97c" + "reference": "fbb0ba67688b780efbc886c1a0a0948dcf7205d6" }, "dist": { "type": "zip", - "url": "https://api.github.com/repos/symfony/finder/zipball/4d58f0f4fe95a30d7b538d71197135483560b97c", - "reference": "4d58f0f4fe95a30d7b538d71197135483560b97c", + "url": "https://api.github.com/repos/symfony/finder/zipball/fbb0ba67688b780efbc886c1a0a0948dcf7205d6", + "reference": "fbb0ba67688b780efbc886c1a0a0948dcf7205d6", "shasum": "" }, "require": { @@ -1098,7 +1098,7 @@ "description": "Finds files and directories via an intuitive fluent interface", "homepage": "https://symfony.com", "support": { - "source": "https://github.com/symfony/finder/tree/v7.0.7" + "source": "https://github.com/symfony/finder/tree/v7.1.1" }, "funding": [ { @@ -1114,7 +1114,7 @@ "type": "tidelift" } ], - "time": "2024-04-28T11:44:19+00:00" + "time": "2024-05-31T14:57:53+00:00" }, { "name": "symfony/polyfill-ctype", @@ -1593,16 +1593,16 @@ }, { "name": "symfony/process", - "version": "v7.0.7", + "version": "v7.1.1", "source": { "type": "git", "url": "https://github.com/symfony/process.git", - "reference": "3839e56b94dd1dbd13235d27504e66baf23faba0" + "reference": "febf90124323a093c7ee06fdb30e765ca3c20028" }, "dist": { "type": "zip", - "url": "https://api.github.com/repos/symfony/process/zipball/3839e56b94dd1dbd13235d27504e66baf23faba0", - "reference": "3839e56b94dd1dbd13235d27504e66baf23faba0", + "url": "https://api.github.com/repos/symfony/process/zipball/febf90124323a093c7ee06fdb30e765ca3c20028", + "reference": "febf90124323a093c7ee06fdb30e765ca3c20028", "shasum": "" }, "require": { @@ -1634,7 +1634,7 @@ "description": "Executes commands in sub-processes", "homepage": "https://symfony.com", "support": { - "source": "https://github.com/symfony/process/tree/v7.0.7" + "source": "https://github.com/symfony/process/tree/v7.1.1" }, "funding": [ { @@ -1650,7 +1650,7 @@ "type": "tidelift" } ], - "time": "2024-04-18T09:29:19+00:00" + "time": "2024-05-31T14:57:53+00:00" }, { "name": "symfony/service-contracts", @@ -1737,16 +1737,16 @@ }, { "name": "symfony/string", - "version": "v7.0.7", + "version": "v7.1.1", "source": { "type": "git", "url": "https://github.com/symfony/string.git", - "reference": "e405b5424dc2528e02e31ba26b83a79fd4eb8f63" + "reference": "60bc311c74e0af215101235aa6f471bcbc032df2" }, "dist": { "type": "zip", - "url": "https://api.github.com/repos/symfony/string/zipball/e405b5424dc2528e02e31ba26b83a79fd4eb8f63", - "reference": "e405b5424dc2528e02e31ba26b83a79fd4eb8f63", + "url": "https://api.github.com/repos/symfony/string/zipball/60bc311c74e0af215101235aa6f471bcbc032df2", + "reference": "60bc311c74e0af215101235aa6f471bcbc032df2", "shasum": "" }, "require": { @@ -1760,6 +1760,7 @@ "symfony/translation-contracts": "<2.5" }, "require-dev": { + "symfony/emoji": "^7.1", "symfony/error-handler": "^6.4|^7.0", "symfony/http-client": "^6.4|^7.0", "symfony/intl": "^6.4|^7.0", @@ -1803,7 +1804,7 @@ "utf8" ], "support": { - "source": "https://github.com/symfony/string/tree/v7.0.7" + "source": "https://github.com/symfony/string/tree/v7.1.1" }, "funding": [ { @@ -1819,20 +1820,20 @@ "type": "tidelift" } ], - "time": "2024-04-18T09:29:19+00:00" + "time": "2024-06-04T06:40:14+00:00" }, { "name": "symfony/translation", - "version": "v7.0.7", + "version": "v7.1.1", "source": { "type": "git", "url": "https://github.com/symfony/translation.git", - "reference": "1515e03afaa93e6419aba5d5c9d209159317100b" + "reference": "cf5ae136e124fc7681b34ce9fac9d5b9ae8ceee3" }, "dist": { "type": "zip", - "url": "https://api.github.com/repos/symfony/translation/zipball/1515e03afaa93e6419aba5d5c9d209159317100b", - "reference": "1515e03afaa93e6419aba5d5c9d209159317100b", + "url": "https://api.github.com/repos/symfony/translation/zipball/cf5ae136e124fc7681b34ce9fac9d5b9ae8ceee3", + "reference": "cf5ae136e124fc7681b34ce9fac9d5b9ae8ceee3", "shasum": "" }, "require": { @@ -1897,7 +1898,7 @@ "description": "Provides tools to internationalize your application", "homepage": "https://symfony.com", "support": { - "source": "https://github.com/symfony/translation/tree/v7.0.7" + "source": "https://github.com/symfony/translation/tree/v7.1.1" }, "funding": [ { @@ -1913,7 +1914,7 @@ "type": "tidelift" } ], - "time": "2024-04-18T09:29:19+00:00" + "time": "2024-05-31T14:57:53+00:00" }, { "name": "symfony/translation-contracts", @@ -2071,16 +2072,16 @@ "packages-dev": [ { "name": "myclabs/deep-copy", - "version": "1.11.1", + "version": "1.12.0", "source": { "type": "git", "url": "https://github.com/myclabs/DeepCopy.git", - "reference": "7284c22080590fb39f2ffa3e9057f10a4ddd0e0c" + "reference": "3a6b9a42cd8f8771bd4295d13e1423fa7f3d942c" }, "dist": { "type": "zip", - "url": "https://api.github.com/repos/myclabs/DeepCopy/zipball/7284c22080590fb39f2ffa3e9057f10a4ddd0e0c", - "reference": "7284c22080590fb39f2ffa3e9057f10a4ddd0e0c", + "url": "https://api.github.com/repos/myclabs/DeepCopy/zipball/3a6b9a42cd8f8771bd4295d13e1423fa7f3d942c", + "reference": "3a6b9a42cd8f8771bd4295d13e1423fa7f3d942c", "shasum": "" }, "require": { @@ -2088,11 +2089,12 @@ }, "conflict": { "doctrine/collections": "<1.6.8", - "doctrine/common": "<2.13.3 || >=3,<3.2.2" + "doctrine/common": "<2.13.3 || >=3 <3.2.2" }, "require-dev": { "doctrine/collections": "^1.6.8", "doctrine/common": "^2.13.3 || ^3.2.2", + "phpspec/prophecy": "^1.10", "phpunit/phpunit": "^7.5.20 || ^8.5.23 || ^9.5.13" }, "type": "library", @@ -2118,7 +2120,7 @@ ], "support": { "issues": "https://github.com/myclabs/DeepCopy/issues", - "source": "https://github.com/myclabs/DeepCopy/tree/1.11.1" + "source": "https://github.com/myclabs/DeepCopy/tree/1.12.0" }, "funding": [ { @@ -2126,7 +2128,7 @@ "type": "tidelift" } ], - "time": "2023-03-08T13:26:56+00:00" + "time": "2024-06-12T14:39:25+00:00" }, { "name": "nikic/php-parser", @@ -2306,16 +2308,16 @@ }, { "name": "phpstan/phpstan", - "version": "1.11.2", + "version": "1.11.5", "source": { "type": "git", "url": "https://github.com/phpstan/phpstan.git", - "reference": "0d5d4294a70deb7547db655c47685d680e39cfec" + "reference": "490f0ae1c92b082f154681d7849aee776a7c1443" }, "dist": { "type": "zip", - "url": "https://api.github.com/repos/phpstan/phpstan/zipball/0d5d4294a70deb7547db655c47685d680e39cfec", - "reference": "0d5d4294a70deb7547db655c47685d680e39cfec", + "url": "https://api.github.com/repos/phpstan/phpstan/zipball/490f0ae1c92b082f154681d7849aee776a7c1443", + "reference": "490f0ae1c92b082f154681d7849aee776a7c1443", "shasum": "" }, "require": { @@ -2360,7 +2362,7 @@ "type": "github" } ], - "time": "2024-05-24T13:23:04+00:00" + "time": "2024-06-17T15:10:54+00:00" }, { "name": "phpunit/php-code-coverage", @@ -2685,16 +2687,16 @@ }, { "name": "phpunit/phpunit", - "version": "10.5.20", + "version": "10.5.22", "source": { "type": "git", "url": "https://github.com/sebastianbergmann/phpunit.git", - "reference": "547d314dc24ec1e177720d45c6263fb226cc2ae3" + "reference": "8afb89b399b17c2ce2618015bdc9f81a117c5ee1" }, "dist": { "type": "zip", - "url": "https://api.github.com/repos/sebastianbergmann/phpunit/zipball/547d314dc24ec1e177720d45c6263fb226cc2ae3", - "reference": "547d314dc24ec1e177720d45c6263fb226cc2ae3", + "url": "https://api.github.com/repos/sebastianbergmann/phpunit/zipball/8afb89b399b17c2ce2618015bdc9f81a117c5ee1", + "reference": "8afb89b399b17c2ce2618015bdc9f81a117c5ee1", "shasum": "" }, "require": { @@ -2766,7 +2768,7 @@ "support": { "issues": "https://github.com/sebastianbergmann/phpunit/issues", "security": "https://github.com/sebastianbergmann/phpunit/security/policy", - "source": "https://github.com/sebastianbergmann/phpunit/tree/10.5.20" + "source": "https://github.com/sebastianbergmann/phpunit/tree/10.5.22" }, "funding": [ { @@ -2782,7 +2784,7 @@ "type": "tidelift" } ], - "time": "2024-04-24T06:32:35+00:00" + "time": "2024-06-19T05:29:34+00:00" }, { "name": "sebastian/cli-parser", diff --git a/pkgs/by-name/la/laravel/package.nix b/pkgs/by-name/la/laravel/package.nix index 67ba3b2594cb8..61d2a3f88d78c 100644 --- a/pkgs/by-name/la/laravel/package.nix +++ b/pkgs/by-name/la/laravel/package.nix @@ -6,19 +6,19 @@ }: php.buildComposerProject (finalAttrs: { pname = "laravel"; - version = "5.8.1"; + version = "5.8.3"; src = fetchFromGitHub { owner = "laravel"; repo = "installer"; rev = "v${finalAttrs.version}"; - hash = "sha256-LQABZnmKgJ8qkymmSjhjc+x1qZ/tFqFyQbfeGZECxok="; + hash = "sha256-a7DbpjIcT1JbhuzpzQVQ/iiWLAVF/XisrTUsDbR78XQ="; }; nativeBuildInputs = [ makeWrapper ]; composerLock = ./composer.lock; - vendorHash = "sha256-f18N2qNCUFetCaHaC4X6Benq70x21SVQ3YSs8kovK1g="; + vendorHash = "sha256-NyD/kyqGyE+yO7wCitMipTWnKbGSd/FSQ3iGcXvCv5Y="; postInstall = '' wrapProgram $out/bin/laravel \ diff --git a/pkgs/by-name/li/lib60870/package.nix b/pkgs/by-name/li/lib60870/package.nix index 9d8e959b99137..4669042b7be9e 100644 --- a/pkgs/by-name/li/lib60870/package.nix +++ b/pkgs/by-name/li/lib60870/package.nix @@ -4,6 +4,7 @@ stdenv, fetchFromGitHub, gitUpdater, + mbedtls_2, }: stdenv.mkDerivation (finalAttrs: { @@ -23,6 +24,12 @@ stdenv.mkDerivation (finalAttrs: { nativeBuildInputs = [ cmake ]; + buildInputs = [ mbedtls_2 ]; + + cmakeFlags = [ (lib.cmakeBool "WITH_MBEDTLS" true) ]; + + env.NIX_LDFLAGS = "-lmbedcrypto -lmbedx509 -lmbedtls"; + passthru.updateScript = gitUpdater { rev-prefix = "v"; }; meta = with lib; { diff --git a/pkgs/by-name/li/libsbml/package.nix b/pkgs/by-name/li/libsbml/package.nix index ce895beee0060..513e72f322bc5 100644 --- a/pkgs/by-name/li/libsbml/package.nix +++ b/pkgs/by-name/li/libsbml/package.nix @@ -22,9 +22,9 @@ stdenv.mkDerivation (attrs: { patches = [ # This should be in next release, remember to remove fetchpatch - (fetchpatch { + (fetchpatch { # https://github.com/sbmlteam/libsbml/pull/358 name = "fix-xmlerror-conversion.patch"; - url = "https://github.com/sbmlteam/libsbml/pull/358.patch"; + url = "https://github.com/sbmlteam/libsbml/commit/de2f77ee6766fe933a1472200f5e08e7c5ba6f8c.patch"; hash = "sha256-uirG6XJ+w0hqBUEAGDnzhHoVtJVRdN1eqBYeneKMBao="; }) ]; diff --git a/pkgs/by-name/li/libsignal-ffi/package.nix b/pkgs/by-name/li/libsignal-ffi/package.nix index d2c8f1f3df806..c78efec962b3d 100644 --- a/pkgs/by-name/li/libsignal-ffi/package.nix +++ b/pkgs/by-name/li/libsignal-ffi/package.nix @@ -21,8 +21,10 @@ rustPlatform.buildRustPackage rec { hash = "sha256-HqnxemAPjjKl/l4dVjEUIIvgW3ibNtQWnA10QYcd8Os="; }; - nativeBuildInputs = [ protobuf ] ++ lib.optionals stdenv.isDarwin [ xcodebuild ]; - buildInputs = [ rustPlatform.bindgenHook ]; + nativeBuildInputs = [ + protobuf + rustPlatform.bindgenHook + ] ++ lib.optionals stdenv.isDarwin [ xcodebuild ]; env.BORING_BSSL_PATH = "${boringssl-wrapper}"; diff --git a/pkgs/by-name/li/lint-staged/package.nix b/pkgs/by-name/li/lint-staged/package.nix index 0fa6179dca687..dc5b5988ed152 100644 --- a/pkgs/by-name/li/lint-staged/package.nix +++ b/pkgs/by-name/li/lint-staged/package.nix @@ -2,16 +2,16 @@ buildNpmPackage rec { pname = "lint-staged"; - version = "15.2.6"; + version = "15.2.7"; src = fetchFromGitHub { owner = "okonet"; repo = "lint-staged"; rev = "v${version}"; - hash = "sha256-Jn6KGfgL4Si48hdg4glACe6AO5QzPgnasYhHMivzMGk="; + hash = "sha256-V7NJ8UWORo+APCVJmC6l6uQUazLrG94O9V4yC3McBp4="; }; - npmDepsHash = "sha256-6BKx06h+laYSMNm36R992oXYwCDS90F+nh21MnHA998="; + npmDepsHash = "sha256-9Twg9jppFkp0cpxJfBVmWRMwKsXnJ+tUBH8qMYAm1cY="; dontNpmBuild = true; diff --git a/pkgs/by-name/lo/local-ai/package.nix b/pkgs/by-name/lo/local-ai/package.nix index 418a9a638419e..3e2c3fc165e49 100644 --- a/pkgs/by-name/lo/local-ai/package.nix +++ b/pkgs/by-name/lo/local-ai/package.nix @@ -16,6 +16,7 @@ , pkg-config , buildGoModule , makeWrapper +, ncurses # apply feature parameter names according to # https://github.com/NixOS/rfcs/pull/169 @@ -60,7 +61,7 @@ let else if with_clblas then "clblas" else ""; - inherit (cudaPackages) libcublas cuda_nvcc cuda_cccl cuda_cudart cudatoolkit; + inherit (cudaPackages) libcublas cuda_nvcc cuda_cccl cuda_cudart libcufft; go-llama = effectiveStdenv.mkDerivation { name = "go-llama"; @@ -77,13 +78,12 @@ let ]; buildInputs = [ ] + ++ lib.optionals with_cublas [ cuda_cccl cuda_cudart libcublas ] ++ lib.optionals with_clblas [ clblast ocl-icd opencl-headers ] ++ lib.optionals with_openblas [ openblas.dev ]; nativeBuildInputs = [ cmake ] - # backward compatiblity with nixos-23.11 - # use cuda_nvcc after release of nixos-24.05 - ++ lib.optionals with_cublas [ cudatoolkit ]; + ++ lib.optionals with_cublas [ cuda_nvcc ]; dontUseCmakeConfigure = true; @@ -111,7 +111,7 @@ let })).override { cudaSupport = false; openclSupport = false; - blasSupport = true; # TODO: set to false, when dropping 23.11 support + blasSupport = false; }; llama-cpp-grpc = (llama-cpp.overrideAttrs (final: prev: { @@ -119,8 +119,8 @@ let src = fetchFromGitHub { owner = "ggerganov"; repo = "llama.cpp"; - rev = "74f33adf5f8b20b08fc5a6aa17ce081abe86ef2f"; - hash = "sha256-hSdHhsC5Q8pLEC2bj8Gke4/ffCts5l7LtYa9RDrpGBI="; + rev = "37bef8943312d91183ff06d8f1214082a17344a5"; + hash = "sha256-E3kCMDK5TXozBsprp4D581WHTVP9aljxB1KZUKug1pM="; fetchSubmodules = true; }; postPatch = prev.postPatch + '' @@ -143,6 +143,8 @@ let (lib.cmakeBool "LLAMA_FMA" enable_fma) (lib.cmakeBool "LLAMA_F16C" enable_f16c) ]; + postInstall = null; + buildInputs = prev.buildInputs ++ [ protobuf # provides also abseil_cpp as propagated build input grpc @@ -273,15 +275,15 @@ let src = fetchFromGitHub { owner = "ggerganov"; repo = "whisper.cpp"; - rev = "22d46b7ba4620e2db1281e210d0186863cffcec0"; - hash = "sha256-JC3GHRBjFvfQSUWRdAcMc0pol54RsqUF1+zIZYAsbC4="; + rev = "b29b3b29240aac8b71ce8e5a4360c1f1562ad66f"; + hash = "sha256-vSd+AP9AexbG4wvdkk6wjxYQBZdKWGK2Ix7c86MUfB8="; }; nativeBuildInputs = [ cmake pkg-config ] ++ lib.optionals with_cublas [ cuda_nvcc ]; buildInputs = [ ] - ++ lib.optionals with_cublas [ cuda_cccl cuda_cudart libcublas ] + ++ lib.optionals with_cublas [ cuda_cccl cuda_cudart libcublas libcufft ] ++ lib.optionals with_clblas [ clblast ocl-icd opencl-headers ] ++ lib.optionals with_openblas [ openblas.dev ]; @@ -392,18 +394,18 @@ let stdenv; pname = "local-ai"; - version = "2.16.0"; + version = "2.17.1"; src = fetchFromGitHub { owner = "go-skynet"; repo = "LocalAI"; rev = "v${version}"; - hash = "sha256-3SfU68wGyYIX0haKfuHGKHhthuDSeSdr18ReDkFzhH0="; + hash = "sha256-G9My4t3vJ1sWyD+vxUgON4ezXURVAAgu1nAtTjd3ZR8="; }; self = buildGoModule.override { stdenv = effectiveStdenv; } { inherit pname version src; - vendorHash = "sha256-UjqEsgRZ+xv4Thwh4u3juvg3JI3+RdGyCZlsk7ddgTU="; + vendorHash = "sha256-Hu7aJFi40CKNWAxYOR47VBZI1A/9SlBIVQVcB8iqcxA="; env.NIX_CFLAGS_COMPILE = lib.optionalString with_stablediffusion " -isystem ${opencv}/include/opencv4"; @@ -427,16 +429,19 @@ let -e '/^ALL_GRPC_BACKENDS+=backend-assets\/grpc\/llama-cpp-avx/ d' \ -e '/^ALL_GRPC_BACKENDS+=backend-assets\/grpc\/llama-cpp-cuda/ d' \ + '' + lib.optionalString with_cublas '' + sed -i Makefile \ + -e '/^CGO_LDFLAGS_WHISPER?=/ s;$;-L${libcufft}/lib -L${cuda_cudart}/lib;' ''; postConfigure = '' shopt -s extglob mkdir -p backend-assets/grpc - cp ${llama-cpp-grpc}/bin/?(llama-cpp-)grpc-server backend-assets/grpc/llama-cpp-avx2 - cp ${llama-cpp-rpc}/bin/?(llama-cpp-)grpc-server backend-assets/grpc/llama-cpp-grpc + cp ${llama-cpp-grpc}/bin/grpc-server backend-assets/grpc/llama-cpp-avx2 + cp ${llama-cpp-rpc}/bin/grpc-server backend-assets/grpc/llama-cpp-grpc mkdir -p backend-assets/util - cp ${llama-cpp-rpc}/bin/?(llama-cpp-)rpc-server backend-assets/util/llama-cpp-rpc-server + cp ${llama-cpp-rpc}/bin/rpc-server backend-assets/util/llama-cpp-rpc-server ''; buildInputs = [ ] @@ -451,6 +456,7 @@ let protoc-gen-go protoc-gen-go-grpc makeWrapper + ncurses # tput ] ++ lib.optionals with_cublas [ cuda_nvcc ]; diff --git a/pkgs/applications/misc/logseq/default.nix b/pkgs/by-name/lo/logseq/package.nix index 7dfee5ca9dfdd..793e305ac3a45 100644 --- a/pkgs/applications/misc/logseq/default.nix +++ b/pkgs/by-name/lo/logseq/package.nix @@ -3,8 +3,10 @@ , fetchurl , appimageTools , makeWrapper -# graphs will not sync without matching upstream's major electron version -, electron_27 +# Notice: graphs will not sync without matching upstream's major electron version +# the specific electron version is set at top-level file to preserve override interface. +# whenever updating this package also sync electron version at top-level file. +, electron , autoPatchelfHook , git , nix-update-script @@ -59,7 +61,7 @@ in { postFixup = '' # set the env "LOCAL_GIT_DIRECTORY" for dugite so that we can use the git in nixpkgs - makeWrapper ${electron_27}/bin/electron $out/bin/${pname} \ + makeWrapper ${electron}/bin/electron $out/bin/${pname} \ --set "LOCAL_GIT_DIRECTORY" ${git} \ --add-flags $out/share/${pname}/resources/app \ --add-flags "\''${NIXOS_OZONE_WL:+\''${WAYLAND_DISPLAY:+--ozone-platform-hint=auto --enable-features=WaylandWindowDecorations}}" diff --git a/pkgs/by-name/lo/louvre/package.nix b/pkgs/by-name/lo/louvre/package.nix index 8235de4ef3578..5b7ad4a2f64fe 100644 --- a/pkgs/by-name/lo/louvre/package.nix +++ b/pkgs/by-name/lo/louvre/package.nix @@ -22,9 +22,9 @@ }: stdenv.mkDerivation (self: { pname = "louvre"; - version = "2.0.0-1"; + version = "2.1.0-1"; rev = "v${self.version}"; - hash = "sha256-tDpgFtccMlGYrahEC4vlj5cfIzkqUl664ccRhcKIVTQ="; + hash = "sha256-qRvAryZ6SIhh5yDugcosVYOM2Tq0XPuaA6ib8/jWxNI="; src = fetchFromGitHub { inherit (self) rev hash; diff --git a/pkgs/by-name/lx/lxd-ui/package.nix b/pkgs/by-name/lx/lxd-ui/package.nix index b200b1ea0d909..a436f32e7d50d 100644 --- a/pkgs/by-name/lx/lxd-ui/package.nix +++ b/pkgs/by-name/lx/lxd-ui/package.nix @@ -12,18 +12,18 @@ stdenv.mkDerivation rec { pname = "lxd-ui"; - version = "0.8.1"; + version = "0.9"; src = fetchFromGitHub { owner = "canonical"; repo = "lxd-ui"; rev = "refs/tags/${version}"; - hash = "sha256-XLHLWD7iH4A5+MaFYiMILnjPGN565gBRpimFoOJMRtI="; + hash = "sha256-4TIi/LPm35W86p+l5eYU0VETjno8TKmp43m2SReKElM="; }; offlineCache = fetchYarnDeps { yarnLock = "${src}/yarn.lock"; - hash = "sha256-hRZ0vbksxnUv4XMrbhP2PI94UYYzwrydJHSx+uf+MbI="; + hash = "sha256-wExAVEl745X4O9hYhKYX2BjmW494Vr13X8bDmVxKMT4="; }; nativeBuildInputs = [ diff --git a/pkgs/by-name/md/mdsh/package.nix b/pkgs/by-name/md/mdsh/package.nix index e97b8eee51fef..8b482d7e714e7 100644 --- a/pkgs/by-name/md/mdsh/package.nix +++ b/pkgs/by-name/md/mdsh/package.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "mdsh"; - version = "0.8.0"; + version = "0.9.0"; src = fetchFromGitHub { owner = "zimbatm"; repo = "mdsh"; rev = "v${version}"; - hash = "sha256-ammLbKEKXDSuZMr4DwPpcRSkKh7BzNC+4ZRCqTNNCQk="; + hash = "sha256-vN8nFhbZgJIhFuFET9IOmdxT7uBKq/9X+TO9lZsDw6g="; }; - cargoHash = "sha256-wLHMccxk3ceZyGK27t5Kyal48yj9dQNgmEHjH9hR9Pc="; + cargoHash = "sha256-0D1RSUJw7fszc9d4nrp+zCzr9l0xF4Ed8DbK5/O5bEY="; meta = with lib; { description = "Markdown shell pre-processor"; diff --git a/pkgs/by-name/me/mealie/package.nix b/pkgs/by-name/me/mealie/package.nix index 040cf175bb6fa..6646a8ec09803 100644 --- a/pkgs/by-name/me/mealie/package.nix +++ b/pkgs/by-name/me/mealie/package.nix @@ -9,12 +9,12 @@ }: let - version = "1.7.0"; + version = "1.9.0"; src = fetchFromGitHub { owner = "mealie-recipes"; repo = "mealie"; rev = "v${version}"; - hash = "sha256-z7kLBDzvzPWY7XmpROMpw3LcDpsl+hA+w1SdhrD/yNU="; + hash = "sha256-gg7ClclBS9j9n4/3HLxbX8HXTz9Zw5+BYG2MEYRsRBU="; }; frontend = callPackage (import ./mealie-frontend.nix src version) { }; diff --git a/pkgs/by-name/me/melonDS/package.nix b/pkgs/by-name/me/melonDS/package.nix index 74a7cc4a7f68e..5c943e71370ca 100644 --- a/pkgs/by-name/me/melonDS/package.nix +++ b/pkgs/by-name/me/melonDS/package.nix @@ -23,13 +23,13 @@ let in stdenv.mkDerivation (finalAttrs: { pname = "melonDS"; - version = "0.9.5-unstable-2024-06-08"; + version = "0.9.5-unstable-2024-06-18"; src = fetchFromGitHub { owner = "melonDS-emu"; repo = "melonDS"; - rev = "8e9b88d01da0d21c3c35db051d7e44d8ee0c7715"; - hash = "sha256-zlOK5yhg9rmLMDnCxQ9CDAy+qWZdvKwTaKxzna1zxxk="; + rev = "cbb0f4b872ea8a5e2348c7f1a22695056968192f"; + hash = "sha256-J1i7+VrOVQruHFhzjBnSf+DbmIa3o+rWISsdm8kMRC8="; }; nativeBuildInputs = [ diff --git a/pkgs/by-name/mi/miru/package.nix b/pkgs/by-name/mi/miru/package.nix index c96def129eb09..75eb7b4823c5e 100644 --- a/pkgs/by-name/mi/miru/package.nix +++ b/pkgs/by-name/mi/miru/package.nix @@ -5,12 +5,12 @@ appimageTools.wrapType2 rec { pname = "miru"; - version = "5.1.3"; + version = "5.1.4"; src = fetchurl { url = "https://github.com/ThaUnknown/miru/releases/download/v${version}/linux-Miru-${version}.AppImage"; name = "${pname}-${version}.AppImage"; - sha256 = "sha256-F2wFCZvuANoeBNO+o3Rs/DJtyIVQl46MQCpXQcRiDHs="; + sha256 = "sha256-aPutbJthUhZtBYkYuUB5v88OdhOrcnqw4AhnepfO1B4="; }; extraInstallCommands = diff --git a/pkgs/by-name/mi/misconfig-mapper/package.nix b/pkgs/by-name/mi/misconfig-mapper/package.nix index 5db723ea0365b..bd57dbbb5d559 100644 --- a/pkgs/by-name/mi/misconfig-mapper/package.nix +++ b/pkgs/by-name/mi/misconfig-mapper/package.nix @@ -6,13 +6,13 @@ buildGoModule rec { pname = "misconfig-mapper"; - version = "1.3.1"; + version = "1.5.0"; src = fetchFromGitHub { owner = "intigriti"; repo = "misconfig-mapper"; rev = "refs/tags/v${version}"; - hash = "sha256-pQAv4waEocsSDGSOJlK7s5g9rkQGVJRGOpcB3HvG2yo="; + hash = "sha256-kudzShQdTHjv8ahdNavQHBSV0+xM7wygJNZbOz/stQI="; }; vendorHash = "sha256-T4SDL1Pq3mfN6Qd13Safof1EgCqQVB2+K1qJHm+2ilc="; diff --git a/pkgs/by-name/mo/modern-cpp-kafka/package.nix b/pkgs/by-name/mo/modern-cpp-kafka/package.nix index 92bc6e3a62859..f8db36d613bf8 100644 --- a/pkgs/by-name/mo/modern-cpp-kafka/package.nix +++ b/pkgs/by-name/mo/modern-cpp-kafka/package.nix @@ -21,14 +21,14 @@ stdenv.mkDerivation rec { }; patches = [ - (fetchpatch { + (fetchpatch { # https://github.com/morganstanley/modern-cpp-kafka/pull/221 name = "fix-avoid-overwriting-library-paths.patch"; - url = "https://github.com/morganstanley/modern-cpp-kafka/pull/221.patch"; + url = "https://github.com/morganstanley/modern-cpp-kafka/compare/a146d10bcf166f55299c7a55728abaaea52cb0e5...a0b5ec08315759097ce656813be57b2c38d79091.patch"; hash = "sha256-UsQcMvJoRTn5kgXhmXOyqfW3n59kGKO596U2WjtdqAY="; }) - (fetchpatch { + (fetchpatch { # https://github.com/morganstanley/modern-cpp-kafka/pull/222 name = "add-pkg-config-cmake-config.patch"; - url = "https://github.com/morganstanley/modern-cpp-kafka/pull/222.patch"; + url = "https://github.com/morganstanley/modern-cpp-kafka/commit/edc576ab83710412f6201e2bb8de5cb41682ee4a.patch"; hash = "sha256-OjoSttnpgEwSZjCVKc888xJb5f1Dulu/rQqoGmqXNM4="; }) # Fix gcc-13 build failure: diff --git a/pkgs/by-name/mo/monophony/package.nix b/pkgs/by-name/mo/monophony/package.nix index bf048768b5e88..c32943ff76cf5 100644 --- a/pkgs/by-name/mo/monophony/package.nix +++ b/pkgs/by-name/mo/monophony/package.nix @@ -11,15 +11,15 @@ }: python3Packages.buildPythonApplication rec { pname = "monophony"; - version = "2.9.0"; - format = "other"; + version = "2.11.0"; + pyproject = false; sourceRoot = "${src.name}/source"; src = fetchFromGitLab { owner = "zehkira"; repo = "monophony"; rev = "v${version}"; - hash = "sha256-fZ+EQqcHJGOLBwyHZJvML6+SkfFpnt6hb8xHedJ7VSU="; + hash = "sha256-OGUj1NNJNerYx/nBtg4g9xMbz6u4YSqKO6HeMNeYpE8="; }; pythonPath = with python3Packages; [ @@ -28,8 +28,13 @@ python3Packages.buildPythonApplication rec { ytmusicapi ]; + build-system = with python3Packages; [ + pip + setuptools + wheel + ]; + nativeBuildInputs = [ - python3Packages.nuitka gobject-introspection wrapGAppsHook4 ]; @@ -44,13 +49,17 @@ python3Packages.buildPythonApplication rec { gstreamer ]); + # Makefile only contains `install` + dontBuild = true; + installFlags = [ "prefix=$(out)" ]; + dontWrapGApps = true; + preFixup = '' - buildPythonPath "$pythonPath" - gappsWrapperArgs+=( - --prefix PYTHONPATH : "$program_PYTHONPATH" + makeWrapperArgs+=( --prefix PATH : "${lib.makeBinPath [yt-dlp]}" + "''${gappsWrapperArgs[@]}" ) ''; diff --git a/pkgs/by-name/my/myks/package.nix b/pkgs/by-name/my/myks/package.nix index df2e495c329b8..e83e8de1aeb95 100644 --- a/pkgs/by-name/my/myks/package.nix +++ b/pkgs/by-name/my/myks/package.nix @@ -9,16 +9,16 @@ buildGoModule rec { pname = "myks"; - version = "4.2.0"; + version = "4.2.1"; src = fetchFromGitHub { owner = "mykso"; repo = "myks"; rev = "refs/tags/v${version}"; - hash = "sha256-98JkyRszWls2fWS3JxlYa8MRHKpC2ViiDoH8VEk6r3Q="; + hash = "sha256-IkcMn6g9d8C42W1WdgYBSJn603La1eORB58YSY0+HFA="; }; - vendorHash = "sha256-blx/Q787h1eBUmg45VFydqH8hmrCpcobJwIWvTUNDEo="; + vendorHash = "sha256-5pDe/3BDDdB+rd5UnGSmgY+FIu8mxVkP9ppVXFe5SxE="; subPackages = "."; diff --git a/pkgs/by-name/na/namespace-cli/package.nix b/pkgs/by-name/na/namespace-cli/package.nix index 807a7c8d665c3..e1ad7fb280188 100644 --- a/pkgs/by-name/na/namespace-cli/package.nix +++ b/pkgs/by-name/na/namespace-cli/package.nix @@ -5,13 +5,13 @@ buildGoModule rec { pname = "namespace-cli"; - version = "0.0.376"; + version = "0.0.377"; src = fetchFromGitHub { owner = "namespacelabs"; repo = "foundation"; rev = "v${version}"; - hash = "sha256-kBB4TuC0ZRTJEzys7LEsD3WxdLhXpLOkU8K9VyS84Wk="; + hash = "sha256-GQPur1Rc0o7WyCNwXLiu7w3sntQQ/B7WhKHCKVmqH/8="; }; vendorHash = "sha256-72cHswoTZszo42NOrPNuokDlqoJ3/YEhGe+rQSKvgAw="; diff --git a/pkgs/by-name/ne/neovide/package.nix b/pkgs/by-name/ne/neovide/package.nix index 1e94ae750561e..4c4dfab2fe1dc 100644 --- a/pkgs/by-name/ne/neovide/package.nix +++ b/pkgs/by-name/ne/neovide/package.nix @@ -96,7 +96,11 @@ rustPlatform.buildRustPackage.override { stdenv = clangStdenv; } rec { --prefix LD_LIBRARY_PATH : ${libPath} ''; - postInstall = '' + postInstall = lib.optionalString stdenv.isDarwin '' + mkdir -p $out/Applications + cp -r extra/osx/Neovide.app $out/Applications + ln -s $out/bin $out/Applications/Neovide.app/Contents/MacOS + '' + lib.optionalString stdenv.isLinux '' for n in 16x16 32x32 48x48 256x256; do install -m444 -D "assets/neovide-$n.png" \ "$out/share/icons/hicolor/$n/apps/neovide.png" diff --git a/pkgs/by-name/ne/netbird-dashboard/package.nix b/pkgs/by-name/ne/netbird-dashboard/package.nix index 18353174e118a..dcacab7f55859 100644 --- a/pkgs/by-name/ne/netbird-dashboard/package.nix +++ b/pkgs/by-name/ne/netbird-dashboard/package.nix @@ -30,6 +30,6 @@ buildNpmPackage rec { description = "NetBird Management Service Web UI Panel"; homepage = "https://github.com/netbirdio/dashboard"; license = licenses.bsd3; - maintainers = with maintainers; [ thubrecht ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/by-name/ni/nix-web/package.nix b/pkgs/by-name/ni/nix-web/package.nix index 50ef3aed969eb..4f73413d28884 100644 --- a/pkgs/by-name/ni/nix-web/package.nix +++ b/pkgs/by-name/ni/nix-web/package.nix @@ -15,27 +15,20 @@ let in rustPlatform.buildRustPackage rec { pname = "nix-web"; - version = "0.3.0"; + version = "0.4.2"; src = fetchFromGitea { domain = "codeberg.org"; owner = "gorgon"; repo = "gorgon"; rev = "nix-web-v${version}"; - hash = "sha256-/tjcin3p+nE9Y7bhTCj7D4lpjKEFGM1bRqKE8T6igJE="; - - # Various unit tests contain /nix/store/* paths. This breaks the fetcher in a very funny way: - # error: illegal path references in fixed-output derivation '/nix/store/52nmkc6v9qhdyzszlvbncndxyrcdfjn3-source.drv' - nativeBuildInputs = [ nukeReferences ]; - postFetch = '' - find $out -name "*.rs" -print0 | xargs -0 nuke-refs - ''; + hash = "sha256-lAk2VfhclHswsctA0RQgEj5oEX1fowh8TCaKykGEioY="; }; - cargoHash = "sha256-5pPn6APz0kdxuBdz9pgqvECTk6KhXnW/YTjxKgiuD9Q="; + cargoHash = "sha256-romL/RALr/pmwUA8/SN4AOwc+Vndspd1Yrqs0AHPYRY="; nativeBuildInputs = [ pkg-config ]; buildInputs = lib.optional (!stdenv.isDarwin) openssl - ++ lib.optional stdenv.isDarwin darwin.apple_sdk.frameworks.Security; + ++ lib.optionals stdenv.isDarwin (with darwin.apple_sdk.frameworks; [ Security SystemConfiguration ]); postPatch = '' substituteInPlace nix-web/nix-web.service \ @@ -47,11 +40,6 @@ rustPlatform.buildRustPackage rec { cargoBuildFlags = cargoFlags; cargoTestFlags = cargoFlags; - checkFlags = [ - # Skip tests that rely on store paths nuked by `nuke-refs`. - "--skip=test_env_value_to_html_store_path_subpath" - "--skip=test_env_value_to_html_store_path" - ]; NIX_WEB_BUILD_NIX_CLI_PATH = "${nixPackage}/bin/nix"; diff --git a/pkgs/by-name/no/novelwriter/package.nix b/pkgs/by-name/no/novelwriter/package.nix index 33b3c76e2535e..7f578f54a4421 100644 --- a/pkgs/by-name/no/novelwriter/package.nix +++ b/pkgs/by-name/no/novelwriter/package.nix @@ -7,7 +7,7 @@ nix-update-script, }: let - version = "2.4.3"; + version = "2.4.4"; in python3.pkgs.buildPythonApplication { pname = "novelwriter"; @@ -18,7 +18,7 @@ python3.pkgs.buildPythonApplication { owner = "vkbo"; repo = "novelWriter"; rev = "v${version}"; - hash = "sha256-PuoI/2JnbOFuSDTY3uDrySqPl/MGYna+QvSI7WQ8QMk="; + hash = "sha256-vYvrSRQTp/8jcCQIL6HgxdSJwogiPJKfVO+9hhK6emc="; }; nativeBuildInputs = [ qt5.wrapQtAppsHook ]; diff --git a/pkgs/by-name/nu/numi/package.nix b/pkgs/by-name/nu/numi/package.nix new file mode 100644 index 0000000000000..527ecd7c5d2c8 --- /dev/null +++ b/pkgs/by-name/nu/numi/package.nix @@ -0,0 +1,41 @@ +{ + lib, + stdenv, + fetchurl, + undmg, + nix-update-script, +}: + +stdenv.mkDerivation (finalAttrs: { + pname = "numi"; + version = "3.32.721"; + + src = fetchurl { + url = "https://s3.numi.app/updates/${finalAttrs.version}/Numi.dmg"; + hash = "sha256-IbX4nsrPqwOSlYdNJLeaRQwIDVJrzfMXFqRqixHd2zA="; + }; + + nativeBuildInputs = [ undmg ]; + + sourceRoot = "."; + + installPhase = '' + runHook preInstall + + mkdir -p "$out/Applications" + cp -R *.app "$out/Applications" + + runHook postInstall + ''; + + passthru.updateScript = nix-update-script { }; + + meta = { + description = "Beautiful calculator app for macOS"; + homepage = "https://numi.app/"; + license = lib.licenses.unfree; + maintainers = with lib.maintainers; [ donteatoreo ]; + platforms = lib.platforms.darwin; + sourceProvenance = with lib.sourceTypes; [ binaryNativeCode ]; + }; +}) diff --git a/pkgs/by-name/nu/nuv/package.nix b/pkgs/by-name/nu/nuv/package.nix new file mode 100644 index 0000000000000..30ca0bfecfee4 --- /dev/null +++ b/pkgs/by-name/nu/nuv/package.nix @@ -0,0 +1,75 @@ +{ lib +, stdenv +, symlinkJoin +, callPackage +, fetchFromGitHub +, fetchurl +, buildGoModule +, makeWrapper +, breakpointHook +, jq +, curl +, kubectl +, eksctl +, kind +, k3sup +, coreutils +}: + +let + branch = "3.0.0"; + version = "3.0.1-beta.2405292059"; + pname = "nuv"; +in +buildGoModule { + inherit pname version; + + src = fetchFromGitHub { + owner = "nuvolaris"; + repo = "nuv"; + rev = version; + hash = "sha256-MdnBvlA4S2Mi/bcbE+O02x+wvlIrsK1Zc0dySz4FB/w="; + }; + + subPackages = [ "." ]; + vendorHash = "sha256-JkQbQ2NEaumXbAfsv0fNiQf/EwMs3SDLHvu7c/bU7fU="; + + nativeBuildInputs = [ makeWrapper jq curl breakpointHook ]; + + ldflags = [ + "-s" + "-w" + "-X main.NuvVersion=${version}" + "-X main.NuvBranch=${branch}" + ]; + + # false because tests require some modifications inside nix-env + doCheck = false; + + postInstall = let + nuv-bin = symlinkJoin { + name = "nuv-bin"; + paths = [ + coreutils + kubectl + eksctl + kind + k3sup + ]; + }; + in '' + wrapProgram $out/bin/nuv --set NUV_BIN "${nuv-bin}/bin" + ''; + + passthru.tests = { + simple = callPackage ./tests.nix { inherit version; }; + }; + + meta = { + homepage = "https://nuvolaris.io/"; + description = "A CLI tool for running tasks using the Nuvolaris serverless engine"; + license = lib.licenses.asl20; + mainProgram = "nuv"; + maintainers = with lib.maintainers; [ msciabarra d4rkstar ]; + }; +} diff --git a/pkgs/by-name/nu/nuv/tests.nix b/pkgs/by-name/nu/nuv/tests.nix new file mode 100644 index 0000000000000..4e531728e8ff4 --- /dev/null +++ b/pkgs/by-name/nu/nuv/tests.nix @@ -0,0 +1,17 @@ +{ runCommand, nuv, version }: + +runCommand "nuv-test-run" +{ + nativeBuildInputs = [ nuv ]; +} '' + export TMP_BASE=$(mktemp -d /tmp/.nuv-XXXXX) + export HOME=$TMP_BASE + export NUV_REPO="" + export NUV_ROOT=$TMP_BASE/.nuv/3.0.0/olaris + rm -rf $TMP_BASE/.nuv && \ + mkdir -p $TMP_BASE/.nuv/3.0.0/olaris && \ + mkdir $TMP_BASE/.nuv/tmp + V=$(nuv -version 2>/dev/null) + diff -U3 --color=auto <(echo "$V") <(echo "${version}") + touch $out +'' diff --git a/pkgs/by-name/od/odoo/package.nix b/pkgs/by-name/od/odoo/package.nix new file mode 100644 index 0000000000000..f2239bd5d59e3 --- /dev/null +++ b/pkgs/by-name/od/odoo/package.nix @@ -0,0 +1,111 @@ +{ stdenv +, lib +, fetchgit +, fetchzip +, python310 +, rtlcss +, wkhtmltopdf +, nixosTests +, odoo_version ? "17.0" +, odoo_release ? "20240610" +}: + +let + python = python310.override { + packageOverrides = final: prev: { + # requirements.txt fixes docutils at 0.17; the default 0.21.1 tested throws exceptions + docutils-0_17 = prev.docutils.overridePythonAttrs (old: rec { + version = "0.17"; + src = fetchgit { + url = "git://repo.or.cz/docutils.git"; + rev = "docutils-${version}"; + hash = "sha256-O/9q/Dg1DBIxKdNBOhDV16yy5ez0QANJYMjeovDoWX8="; + }; + buildInputs = with prev; [setuptools]; + }); + }; + }; +in python.pkgs.buildPythonApplication rec { + pname = "odoo"; + version = "${odoo_version}.${odoo_release}"; + + format = "setuptools"; + + src = fetchzip { + # find latest version on https://nightly.odoo.com/${odoo_version}/nightly/src + url = "https://nightly.odoo.com/${odoo_version}/nightly/src/odoo_${version}.zip"; + name = "${pname}-${version}"; + hash = "sha256-blibGJyaz+MxMazOXhPbGBAJWZoGubirwSnjVYyLBJs="; # odoo + }; + + # needs some investigation + doCheck = false; + + makeWrapperArgs = [ + "--prefix" "PATH" ":" "${lib.makeBinPath [ wkhtmltopdf rtlcss ]}" + ]; + + propagatedBuildInputs = with python.pkgs; [ + babel + chardet + cryptography + decorator + docutils-0_17 # sphinx has a docutils requirement >= 18 + ebaysdk + freezegun + gevent + greenlet + idna + jinja2 + libsass + lxml + markupsafe + num2words + ofxparse + passlib + pillow + polib + psutil + psycopg2 + pydot + pyopenssl + pypdf2 + pyserial + python-dateutil + python-ldap + python-stdnum + pytz + pyusb + qrcode + reportlab + requests + rjsmin + urllib3 + vobject + werkzeug + xlrd + xlsxwriter + xlwt + zeep + + setuptools + mock + ]; + + # takes 5+ minutes and there are not files to strip + dontStrip = true; + + passthru = { + updateScript = ./update.sh; + tests = { + inherit (nixosTests) odoo; + }; + }; + + meta = with lib; { + description = "Open Source ERP and CRM"; + homepage = "https://www.odoo.com/"; + license = licenses.lgpl3Only; + maintainers = with maintainers; [ mkg20001 siriobalmelli ]; + }; +} diff --git a/pkgs/by-name/od/odoo/update.sh b/pkgs/by-name/od/odoo/update.sh new file mode 100755 index 0000000000000..e9c50ccb50815 --- /dev/null +++ b/pkgs/by-name/od/odoo/update.sh @@ -0,0 +1,26 @@ +#!/usr/bin/env nix-shell +#!nix-shell -i bash -p curl gnused nix coreutils nix-prefetch + +set -euo pipefail + +VERSION="17.0" # must be incremented manually + +RELEASE="$( + curl "https://nightly.odoo.com/$VERSION/nightly/src/" | + sed -nE 's/.*odoo_'"$VERSION"'.(20[0-9]{6}).tar.gz.*/\1/p' | + tail -n 1 +)" + +latestVersion="$VERSION.$RELEASE" +currentVersion=$(nix-instantiate --eval -E "with import ./. {}; odoo.version or (lib.getVersion odoo)" | tr -d '"') + +if [[ "$currentVersion" == "$latestVersion" ]]; then + echo "odoo is up-to-date: $currentVersion" + exit 0 +fi + +cd "$(dirname "${BASH_SOURCE[0]}")" + +sed -ri "s| hash.+ # odoo| hash = \"$(nix-prefetch -q fetchzip --url "https://nightly.odoo.com/${VERSION}/nightly/src/odoo_${latestVersion}.zip")\"; # odoo|g" package.nix +sed -ri "s|, odoo_version \? .+|, odoo_version ? \"$VERSION\"|" package.nix +sed -ri "s|, odoo_release \? .+|, odoo_release ? \"$RELEASE\"|" package.nix diff --git a/pkgs/applications/finance/odoo/odoo15.nix b/pkgs/by-name/od/odoo15/package.nix index a3255c4aa101c..a3255c4aa101c 100644 --- a/pkgs/applications/finance/odoo/odoo15.nix +++ b/pkgs/by-name/od/odoo15/package.nix diff --git a/pkgs/applications/finance/odoo/default.nix b/pkgs/by-name/od/odoo16/package.nix index b9829326768a5..6e68228d73479 100644 --- a/pkgs/applications/finance/odoo/default.nix +++ b/pkgs/by-name/od/odoo16/package.nix @@ -23,6 +23,9 @@ let inherit version; hash = "sha256-K4wORHtLnbzIXdl7butNy69si2w74L1lTiVVPgohV9g="; }; + disabledTests = old.disabledTests ++ [ + "test_response_body" + ]; }); }; }; @@ -99,7 +102,6 @@ in python.pkgs.buildPythonApplication rec { dontStrip = true; passthru = { - updateScript = ./update.sh; tests = { inherit (nixosTests) odoo; }; diff --git a/pkgs/by-name/oe/oelint-adv/package.nix b/pkgs/by-name/oe/oelint-adv/package.nix index 5548ac8187669..efadd6e13f5a9 100644 --- a/pkgs/by-name/oe/oelint-adv/package.nix +++ b/pkgs/by-name/oe/oelint-adv/package.nix @@ -6,13 +6,13 @@ python3.pkgs.buildPythonApplication rec { pname = "oelint-adv"; - version = "5.5.0"; + version = "5.6.0"; format = "setuptools"; src = fetchPypi { inherit version; pname = "oelint_adv"; - hash = "sha256-9cyYBPDYbhDVaKNLAm1LjB5/UfnYkAuT46XI0JaHg3I="; + hash = "sha256-8y+7FUxsw5nxyCYdukigyQDkCgcHYLFSoIVmr0P/IVs="; }; propagatedBuildInputs = with python3.pkgs; [ diff --git a/pkgs/by-name/oi/oil/package.nix b/pkgs/by-name/oi/oil/package.nix index c7df2077f7fe1..ef32db45e7977 100644 --- a/pkgs/by-name/oi/oil/package.nix +++ b/pkgs/by-name/oi/oil/package.nix @@ -48,7 +48,7 @@ stdenv.mkDerivation rec { ]; platforms = lib.platforms.all; - maintainers = with lib.maintainers; [ lheckemann alva melkor333 ]; + maintainers = with lib.maintainers; [ alva melkor333 ]; changelog = "https://www.oilshell.org/release/${version}/changelog.html"; }; diff --git a/pkgs/by-name/oi/oils-for-unix/package.nix b/pkgs/by-name/oi/oils-for-unix/package.nix index eebe1137c68ba..bef82befbd07e 100644 --- a/pkgs/by-name/oi/oils-for-unix/package.nix +++ b/pkgs/by-name/oi/oils-for-unix/package.nix @@ -58,7 +58,7 @@ stdenv.mkDerivation rec { license = lib.licenses.asl20; platforms = lib.platforms.all; - maintainers = with lib.maintainers; [ lheckemann alva mkg20001 melkor333 ]; + maintainers = with lib.maintainers; [ alva mkg20001 melkor333 ]; changelog = "https://www.oilshell.org/release/${version}/changelog.html"; }; diff --git a/pkgs/by-name/ol/ollama/package.nix b/pkgs/by-name/ol/ollama/package.nix index 95c79f3c5b506..f727c43e52ae9 100644 --- a/pkgs/by-name/ol/ollama/package.nix +++ b/pkgs/by-name/ol/ollama/package.nix @@ -31,13 +31,13 @@ let pname = "ollama"; # don't forget to invalidate all hashes each update - version = "0.1.44"; + version = "0.1.45"; src = fetchFromGitHub { owner = "ollama"; repo = "ollama"; rev = "v${version}"; - hash = "sha256-HM7xtVdhRwhsLEBLvCgjU1iwdaqowRdrxh/Z0BzTPn8="; + hash = "sha256-AKAuySyReG6kkwwgWodAso44+kri2Gz5VSLco8GBoIw="; fetchSubmodules = true; }; @@ -47,11 +47,11 @@ let # `ollama/llm/generate/gen_common.sh` -> "apply temporary patches until fix is upstream" # each update, these patches should be synchronized with the contents of `ollama/llm/patches/` llamacppPatches = [ - (preparePatch "01-load-progress.diff" "sha256-3QxyKX1n5NeMLU8d7wI/96wCM1Cvb5X5sQL5CFhMFo4=") + (preparePatch "01-load-progress.diff" "sha256-K4GryCH/1cl01cyxaMLX3m4mTE79UoGwLMMBUgov+ew=") (preparePatch "02-clip-log.diff" "sha256-rMWbl3QgrPlhisTeHwD7EnGRJyOhLB4UeS7rqa0tdXM=") (preparePatch "03-load_exception.diff" "sha256-0XfMtMyg17oihqSFDBakBtAF0JwhsR188D+cOodgvDk=") (preparePatch "04-metal.diff" "sha256-Ne8J9R8NndUosSK0qoMvFfKNwqV5xhhce1nSoYrZo7Y=") - (preparePatch "05-default-pretokenizer.diff" "sha256-NrQ0Fv5DAZYtRM0NBEeM2JLVTLFmb4Fs9RhwXhdMCC4=") + (preparePatch "05-default-pretokenizer.diff" "sha256-JnCmFzAkmuI1AqATG3jbX7nGIam4hdDKqqbG5oh7h70=") (preparePatch "06-qwen2.diff" "sha256-nMtoAQUsjYuJv45uTlz8r/K1oF5NUsc75SnhgfSkE30=") ]; diff --git a/pkgs/by-name/op/openpgp-card-tools/package.nix b/pkgs/by-name/op/openpgp-card-tools/package.nix index 0493268f3b9a8..a0dbd7e10a253 100644 --- a/pkgs/by-name/op/openpgp-card-tools/package.nix +++ b/pkgs/by-name/op/openpgp-card-tools/package.nix @@ -11,17 +11,17 @@ rustPlatform.buildRustPackage rec { pname = "openpgp-card-tools"; - version = "0.11.0"; + version = "0.11.2"; src = fetchFromGitea { domain = "codeberg.org"; owner = "openpgp-card"; repo = "openpgp-card-tools"; rev = "v${version}"; - hash = "sha256-GKBli6ybMDqB105POFEocU2X/xvd56V87k6Y6BsNt18="; + hash = "sha256-4PRUBzVy1sb15sYsbitBrOfQnsdbGKoR2OA4EjSc8B8="; }; - cargoHash = "sha256-mLZErQhgRWDMdDC5tWjG9NCvLaSdF4A3uCdN8+QMWjU="; + cargoHash = "sha256-Jm1181WQfYZPKnu0f2om/hxkJ8Bm5AA/3IwBgZkpF0I="; nativeBuildInputs = [ pkg-config rustPlatform.bindgenHook ]; diff --git a/pkgs/by-name/op/openswitcher/package.nix b/pkgs/by-name/op/openswitcher/package.nix index fb47a9f95a5a8..2e9eb94f069bf 100644 --- a/pkgs/by-name/op/openswitcher/package.nix +++ b/pkgs/by-name/op/openswitcher/package.nix @@ -14,14 +14,14 @@ python3Packages.buildPythonApplication rec { pname = "openswitcher"; - version = "0.10.0"; + version = "0.11.0"; format = "other"; src = fetchFromSourcehut { owner = "~martijnbraam"; repo = "pyatem"; rev = version; - hash = "sha256-O+f1vVwfGJjLem25hsYE1Q1V4vzjrc0HxTBUCANCEwE="; + hash = "sha256-VBuOnUVB6n8ahVtunubgao9jHPu9ncX0dhDT0PdSFhU="; }; outputs = [ diff --git a/pkgs/by-name/or/orchard/package.nix b/pkgs/by-name/or/orchard/package.nix index 37bcebe9e4302..5eb8ebe8bcba2 100644 --- a/pkgs/by-name/or/orchard/package.nix +++ b/pkgs/by-name/or/orchard/package.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "orchard"; - version = "0.19.0"; + version = "0.19.1"; src = fetchFromGitHub { owner = "cirruslabs"; repo = pname; rev = version; - hash = "sha256-8E5U+2JTc0GYteoKqYn3JRrMx6ta1J+0GR3Jtn+NkYk="; + hash = "sha256-q1PKmC5sMBO7dJ1Ne9JWnnepFRr/Ty8K/gJIgachDeI="; # populate values that require us to use git. By doing this in postFetch we # can delete .git afterwards and maintain better reproducibility of the src. leaveDotGit = true; diff --git a/pkgs/by-name/or/ord/package.nix b/pkgs/by-name/or/ord/package.nix new file mode 100644 index 0000000000000..6b985dcf968bf --- /dev/null +++ b/pkgs/by-name/or/ord/package.nix @@ -0,0 +1,48 @@ +{ lib +, rustPlatform +, fetchFromGitHub +, pkg-config +, openssl +, stdenv +, darwin +}: + +rustPlatform.buildRustPackage rec { + pname = "ord"; + version = "0.18.5"; + + src = fetchFromGitHub { + owner = "ordinals"; + repo = "ord"; + rev = version; + hash = "sha256-rqyf2GZ3lhYSSr14S+JXJYCYZC+7BbFzxLOourykMas="; + }; + + cargoHash = "sha256-SjD5S8GVjfpIvA++eiNebn9M33aRvrXL+MyqZTK2e4U="; + + nativeBuildInputs = [ + pkg-config + ]; + + buildInputs = [ + openssl + ] ++ lib.optionals stdenv.isDarwin [ + darwin.apple_sdk.frameworks.Security + darwin.apple_sdk.frameworks.SystemConfiguration + ]; + + dontUseCargoParallelTests = true; + + checkFlags = [ + "--skip=subcommand::server::tests::status" # test fails if it built from source tarball + ]; + + meta = with lib; { + description = "Index, block explorer, and command-line wallet for Ordinals"; + homepage = "https://github.com/ordinals/ord"; + changelog = "https://github.com/ordinals/ord/blob/${src.rev}/CHANGELOG.md"; + license = licenses.cc0; + maintainers = with maintainers; [ xrelkd ]; + mainProgram = "ord"; + }; +} diff --git a/pkgs/by-name/ow/owncloud-client/package.nix b/pkgs/by-name/ow/owncloud-client/package.nix index 22666f20b3074..31f2b52b00bb2 100644 --- a/pkgs/by-name/ow/owncloud-client/package.nix +++ b/pkgs/by-name/ow/owncloud-client/package.nix @@ -17,13 +17,13 @@ stdenv.mkDerivation rec { pname = "owncloud-client"; - version = "5.3.0"; + version = "5.3.1"; src = fetchFromGitHub { owner = "owncloud"; repo = "client"; rev = "refs/tags/v${version}"; - hash = "sha256-2BM5XoblPwI2xr0e9VHiN4ePkyUx+NyMDY7HkWa9uZM="; + hash = "sha256-ot+2hxipeZ5eI6nPJ8XGE8gFMNQoblUq+koAFZpZDv4="; }; nativeBuildInputs = [ diff --git a/pkgs/by-name/pi/picom-pijulius/package.nix b/pkgs/by-name/pi/picom-pijulius/package.nix index bb41a7d221afb..998514b3f9815 100644 --- a/pkgs/by-name/pi/picom-pijulius/package.nix +++ b/pkgs/by-name/pi/picom-pijulius/package.nix @@ -1,18 +1,20 @@ { picom, lib, + writeShellScript, fetchFromGitHub, - pcre + pcre, + unstableGitUpdater }: picom.overrideAttrs (previousAttrs: { pname = "picom-pijulius"; - version = "8.2-unstable-2024-04-30"; + version = "8.2-unstable-2024-06-13"; src = fetchFromGitHub { owner = "pijulius"; repo = "picom"; - rev = "e7b14886ae644aaa657383f7c4f44be7797fd5f6"; - hash = "sha256-YQVp5HicO+jbvCYSY+hjDTnXCU6aS3aCvbux6NFcJ/Y="; + rev = "a0e818855daba0d2f11a298f7fd238f8a6049167"; + hash = "sha256-w1SWYhPfFGX2EumEe8UBZA3atW4jvW54GsMYLGg59Ys="; }; buildInputs = (previousAttrs.buildInputs or [ ]) ++ [ pcre ]; @@ -29,4 +31,11 @@ picom.overrideAttrs (previousAttrs: { homepage = "https://github.com/pijulius/picom"; maintainers = with lib.maintainers; [ YvesStraten ]; }; + + passthru.updateScript = unstableGitUpdater { + tagFormat = "v([A-Z]+)([a-z]+)|v([1-9]).([1-9])|v([1-9])-rc([1-9])"; + tagConverter = writeShellScript "picom-pijulius-tag-converter.sh" '' +sed -e 's/v//g' -e 's/([A-Z])([a-z])+/8.2/g' -e 's/-rc([1-9])|-rc//g' -e 's/0/8.2/g' +''; + }; }) diff --git a/pkgs/by-name/pi/pid1/package.nix b/pkgs/by-name/pi/pid1/package.nix index 76e4d3044cea3..d991d01be8487 100644 --- a/pkgs/by-name/pi/pid1/package.nix +++ b/pkgs/by-name/pi/pid1/package.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "pid1"; - version = "0.1.2"; + version = "0.1.3"; src = fetchFromGitHub { owner = "fpco"; repo = "pid1-rs"; rev = "v${version}"; - hash = "sha256-BljIa+4BKI7WHlOhXfN/3VKMzs5G5E4tNlQ2oPpJV2g="; + hash = "sha256-2dnQj3AQxedyq1YvHKt+lVXNEtuB5sMRSCqX9YeifzI="; }; - cargoHash = "sha256-7PANlw/SKxyAqymfXIXFT/v3U0GCiGfgStguSr0lrqQ="; + cargoHash = "sha256-/KK9U1dgCLglgn/MJ7+sov4EEnY/nluEsz0ooMp6ggI="; meta = with lib; { description = "Signal handling and zombie reaping for PID1 process"; diff --git a/pkgs/by-name/pi/pixi/Cargo.lock b/pkgs/by-name/pi/pixi/Cargo.lock index 0f549ee8b6eae..50e299718e769 100644 --- a/pkgs/by-name/pi/pixi/Cargo.lock +++ b/pkgs/by-name/pi/pixi/Cargo.lock @@ -154,15 +154,6 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "b3d1d046238990b9cf5bcde22a3fb3584ee5cf65fb2765f454ed428c7a0063da" [[package]] -name = "arbitrary" -version = "1.3.2" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7d5a26814d8dcb93b0e5a0ff3c6d80a8843bafb21b39e8e18a6f05471870e110" -dependencies = [ - "derive_arbitrary", -] - -[[package]] name = "archspec" version = "0.1.3" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -224,9 +215,9 @@ dependencies = [ [[package]] name = "async-executor" -version = "1.11.0" +version = "1.12.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b10202063978b3351199d68f8b22c4e47e4b1b822f8d43fd862d5ea8c006b29a" +checksum = "c8828ec6e544c02b0d6691d21ed9f9218d0384a82542855073c2a3f58304aaf0" dependencies = [ "async-task", "concurrent-queue", @@ -337,7 +328,7 @@ checksum = "3b43422f69d8ff38f95f1b2bb76517c91589a924d1559a0e935d7c8ce0274c11" dependencies = [ "proc-macro2", "quote", - "syn 2.0.65", + "syn 2.0.66", ] [[package]] @@ -372,14 +363,14 @@ checksum = "c6fa2087f2753a7da8cc1c0dbfcf89579dd57458e36769de5ac750b4671737ca" dependencies = [ "proc-macro2", "quote", - "syn 2.0.65", + "syn 2.0.66", ] [[package]] name = "async_http_range_reader" -version = "0.7.1" +version = "0.8.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8561e6613f8361df8bed11c0eef05b98384643bc81f6b753eec7c1d91f097509" +checksum = "f1a0e0571c5d724d17fbe0b608d31a91e94938722c141877d3a2982216b084c2" dependencies = [ "bisection", "futures", @@ -552,12 +543,11 @@ checksum = "8d696c370c750c948ada61c69a0ee2cbbb9c50b1019ddb86d9317157a99c2cae" [[package]] name = "blocking" -version = "1.6.0" +version = "1.6.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "495f7104e962b7356f0aeb34247aca1fe7d2e783b346582db7f2904cb5717e88" +checksum = "703f41c54fc768e63e091340b424302bb1c29ef4aa0c7f10fe849dfb114d29ea" dependencies = [ "async-channel", - "async-lock 3.3.0", "async-task", "futures-io", "futures-lite 2.3.0", @@ -577,9 +567,9 @@ dependencies = [ [[package]] name = "brotli-decompressor" -version = "4.0.0" +version = "4.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e6221fe77a248b9117d431ad93761222e1cf8ff282d9d1d5d9f53d6299a1cf76" +checksum = "9a45bd2e4095a8b518033b128020dd4a55aab1c0a381ba4404a472630f4bc362" dependencies = [ "alloc-no-stdlib", "alloc-stdlib", @@ -686,7 +676,7 @@ dependencies = [ [[package]] name = "cache-key" version = "0.0.1" -source = "git+https://github.com/astral-sh/uv?tag=0.1.38#0b23caa18d7eb2f874d73e57b7b4bdf35e881a46" +source = "git+https://github.com/astral-sh/uv?rev=65b17f6e81125064ea04c5cfef685516ab660cf5#65b17f6e81125064ea04c5cfef685516ab660cf5" dependencies = [ "hex", "seahash", @@ -839,7 +829,7 @@ dependencies = [ "heck 0.5.0", "proc-macro2", "quote", - "syn 2.0.65", + "syn 2.0.66", ] [[package]] @@ -855,6 +845,16 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "0b6a852b24ab71dffc585bcb46eaf7959d175cb865a7152e35b348d1b2960422" [[package]] +name = "concat-idents" +version = "1.1.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "f76990911f2267d837d9d0ad060aa63aaad170af40904b29461734c339030d4d" +dependencies = [ + "quote", + "syn 2.0.66", +] + +[[package]] name = "concurrent-queue" version = "2.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -1002,7 +1002,7 @@ dependencies = [ "proc-macro2", "quote", "strsim", - "syn 2.0.65", + "syn 2.0.66", ] [[package]] @@ -1013,7 +1013,7 @@ checksum = "733cabb43482b1a1b53eee8583c2b9e8684d592215ea83efd305dd31bc2f0178" dependencies = [ "darling_core", "quote", - "syn 2.0.65", + "syn 2.0.66", ] [[package]] @@ -1074,17 +1074,6 @@ dependencies = [ ] [[package]] -name = "derive_arbitrary" -version = "1.3.2" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "67e77553c4162a157adbf834ebae5b415acbecbeafc7a74b0e886657506a7611" -dependencies = [ - "proc-macro2", - "quote", - "syn 2.0.65", -] - -[[package]] name = "dialoguer" version = "0.11.0" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -1139,20 +1128,9 @@ dependencies = [ ] [[package]] -name = "displaydoc" -version = "0.2.4" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "487585f4d0c6655fe74905e2504d8ad6908e4db67f744eb140876906c2f3175d" -dependencies = [ - "proc-macro2", - "quote", - "syn 2.0.65", -] - -[[package]] name = "distribution-filename" version = "0.0.1" -source = "git+https://github.com/astral-sh/uv?tag=0.1.38#0b23caa18d7eb2f874d73e57b7b4bdf35e881a46" +source = "git+https://github.com/astral-sh/uv?rev=65b17f6e81125064ea04c5cfef685516ab660cf5#65b17f6e81125064ea04c5cfef685516ab660cf5" dependencies = [ "pep440_rs", "platform-tags", @@ -1166,21 +1144,20 @@ dependencies = [ [[package]] name = "distribution-types" version = "0.0.1" -source = "git+https://github.com/astral-sh/uv?tag=0.1.38#0b23caa18d7eb2f874d73e57b7b4bdf35e881a46" +source = "git+https://github.com/astral-sh/uv?rev=65b17f6e81125064ea04c5cfef685516ab660cf5#65b17f6e81125064ea04c5cfef685516ab660cf5" dependencies = [ "anyhow", "cache-key", "distribution-filename", "fs-err", - "git2", - "itertools 0.12.1", + "indexmap 2.2.6", + "itertools 0.13.0", "once_cell", "pep440_rs", "pep508_rs", "platform-tags", "pypi-types", "rkyv", - "rustc-hash", "serde", "serde_json", "thiserror", @@ -1246,7 +1223,7 @@ dependencies = [ "heck 0.4.1", "proc-macro2", "quote", - "syn 2.0.65", + "syn 2.0.66", ] [[package]] @@ -1258,7 +1235,7 @@ dependencies = [ "once_cell", "proc-macro2", "quote", - "syn 2.0.65", + "syn 2.0.66", ] [[package]] @@ -1279,7 +1256,7 @@ checksum = "5c785274071b1b420972453b306eeca06acf4633829db4223b58a2a8c5953bc4" dependencies = [ "proc-macro2", "quote", - "syn 2.0.65", + "syn 2.0.66", ] [[package]] @@ -1384,12 +1361,13 @@ checksum = "9fc0510504f03c51ada170672ac806f1f105a88aa97a5281117e1ddc3368e51a" [[package]] name = "file_url" -version = "0.1.1" +version = "0.1.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1cd0e1a8a0c7a1829090615ebce07ebf31911031a08915ca869f1085f0e39032" +checksum = "1042c5fdc9f2cf548a139ccd0985fa2460d796f99b08574f72f1f53d179e6591" dependencies = [ "itertools 0.12.1", "percent-encoding", + "thiserror", "typed-path", "url", ] @@ -1473,6 +1451,12 @@ dependencies = [ ] [[package]] +name = "fs_extra" +version = "1.3.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "42703706b716c37f96a77aea830392ad231f44c9e9a67872fa5548707e11b11c" + +[[package]] name = "fslock" version = "0.2.1" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -1572,7 +1556,7 @@ checksum = "87750cf4b7a4c0625b1529e4c543c2182106e4dedc60a2a6455e00d212c489ac" dependencies = [ "proc-macro2", "quote", - "syn 2.0.65", + "syn 2.0.66", ] [[package]] @@ -2099,9 +2083,9 @@ dependencies = [ [[package]] name = "hyper-util" -version = "0.1.3" +version = "0.1.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ca38ef113da30126bbff9cd1705f9273e15d45498615d138b0c20279ac7a76aa" +checksum = "3d8d52be92d09acc2e01dddb7fde3ad983fc6489c7db4837e605bc3fca4cb63e" dependencies = [ "bytes", "futures-channel", @@ -2231,7 +2215,7 @@ dependencies = [ [[package]] name = "install-wheel-rs" version = "0.0.1" -source = "git+https://github.com/astral-sh/uv?tag=0.1.38#0b23caa18d7eb2f874d73e57b7b4bdf35e881a46" +source = "git+https://github.com/astral-sh/uv?rev=65b17f6e81125064ea04c5cfef685516ab660cf5#65b17f6e81125064ea04c5cfef685516ab660cf5" dependencies = [ "configparser", "csv", @@ -2257,7 +2241,7 @@ dependencies = [ "uv-fs", "uv-normalize", "walkdir", - "zip 1.3.1", + "zip", ] [[package]] @@ -2422,7 +2406,7 @@ dependencies = [ "proc-macro2", "quote", "regex", - "syn 2.0.65", + "syn 2.0.66", ] [[package]] @@ -2493,9 +2477,9 @@ dependencies = [ [[package]] name = "libz-sys" -version = "1.1.16" +version = "1.1.18" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5e143b5e666b2695d28f6bca6497720813f699c9602dd7f5cac91008b8ada7f9" +checksum = "c15da26e5af7e25c90b37a2d75cdbf940cf4a55316de9d84c679c9b8bfabf82e" dependencies = [ "cc", "libc", @@ -2548,12 +2532,6 @@ dependencies = [ ] [[package]] -name = "lockfree-object-pool" -version = "0.1.6" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9374ef4228402d4b7e403e5838cb880d9ee663314b0a900d5a6aabf0c213552e" - -[[package]] name = "log" version = "0.4.21" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -2561,9 +2539,9 @@ checksum = "90ed8c1e510134f979dbc4f070f87d4313098b704861a105fe34231c70a3901c" [[package]] name = "mailparse" -version = "0.14.1" +version = "0.15.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2d096594926cab442e054e047eb8c1402f7d5b2272573b97ba68aa40629f9757" +checksum = "3da03d5980411a724e8aaf7b61a7b5e386ec55a7fb49ee3d0ff79efc7e5e7c7e" dependencies = [ "charset", "data-encoding", @@ -2671,7 +2649,7 @@ checksum = "49e7bc1560b95a3c4a25d03de42fe76ca718ab92d1a22a55b9b4cf67b3ae635c" dependencies = [ "proc-macro2", "quote", - "syn 2.0.65", + "syn 2.0.66", ] [[package]] @@ -2682,7 +2660,7 @@ checksum = "dcf09caffaac8068c346b6df2a7fc27a177fd20b39421a39ce0a211bde679a6c" dependencies = [ "proc-macro2", "quote", - "syn 2.0.65", + "syn 2.0.66", ] [[package]] @@ -2934,9 +2912,10 @@ dependencies = [ [[package]] name = "once-map" version = "0.0.1" -source = "git+https://github.com/astral-sh/uv?tag=0.1.38#0b23caa18d7eb2f874d73e57b7b4bdf35e881a46" +source = "git+https://github.com/astral-sh/uv?rev=65b17f6e81125064ea04c5cfef685516ab660cf5#65b17f6e81125064ea04c5cfef685516ab660cf5" dependencies = [ "dashmap", + "futures", "tokio", ] @@ -2975,7 +2954,7 @@ checksum = "a948666b637a0f465e8564c73e89d4dde00d72d4d473cc972f390fc3dcee7d9c" dependencies = [ "proc-macro2", "quote", - "syn 2.0.65", + "syn 2.0.66", ] [[package]] @@ -3034,9 +3013,9 @@ dependencies = [ [[package]] name = "ouroboros" -version = "0.18.3" +version = "0.18.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "97b7be5a8a3462b752f4be3ff2b2bf2f7f1d00834902e46be2a4d68b87b0573c" +checksum = "944fa20996a25aded6b4795c6d63f10014a7a83f8be9828a11860b08c5fc4a67" dependencies = [ "aliasable", "ouroboros_macro", @@ -3045,16 +3024,16 @@ dependencies = [ [[package]] name = "ouroboros_macro" -version = "0.18.3" +version = "0.18.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b645dcde5f119c2c454a92d0dfa271a2a3b205da92e4292a68ead4bdbfde1f33" +checksum = "39b0deead1528fd0e5947a8546a9642a9777c25f6e1e26f34c97b204bbb465bd" dependencies = [ "heck 0.4.1", "itertools 0.12.1", "proc-macro2", "proc-macro2-diagnostics", "quote", - "syn 2.0.65", + "syn 2.0.66", ] [[package]] @@ -3088,9 +3067,9 @@ dependencies = [ [[package]] name = "parking_lot" -version = "0.12.2" +version = "0.12.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7e4af0ca4f6caed20e900d564c242b8e5d4903fdacf31d3daf527b66fe6f42fb" +checksum = "f1bf18183cf54e8d6059647fc3063646a1801cf30896933ec2311622cc4b9a27" dependencies = [ "lock_api", "parking_lot_core 0.9.10", @@ -3148,6 +3127,12 @@ dependencies = [ ] [[package]] +name = "path-slash" +version = "0.2.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "1e91099d4268b0e11973f036e885d652fb0b21fedcf69738c627f94db6a44f42" + +[[package]] name = "pathdiff" version = "0.2.1" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -3165,8 +3150,8 @@ dependencies = [ [[package]] name = "pep440_rs" -version = "0.5.0" -source = "git+https://github.com/astral-sh/uv?tag=0.1.38#0b23caa18d7eb2f874d73e57b7b4bdf35e881a46" +version = "0.6.0" +source = "git+https://github.com/astral-sh/uv?rev=65b17f6e81125064ea04c5cfef685516ab660cf5#65b17f6e81125064ea04c5cfef685516ab660cf5" dependencies = [ "once_cell", "rkyv", @@ -3177,8 +3162,8 @@ dependencies = [ [[package]] name = "pep508_rs" -version = "0.4.2" -source = "git+https://github.com/astral-sh/uv?tag=0.1.38#0b23caa18d7eb2f874d73e57b7b4bdf35e881a46" +version = "0.6.0" +source = "git+https://github.com/astral-sh/uv?rev=65b17f6e81125064ea04c5cfef685516ab660cf5#65b17f6e81125064ea04c5cfef685516ab660cf5" dependencies = [ "derivative", "once_cell", @@ -3238,7 +3223,7 @@ dependencies = [ "phf_shared", "proc-macro2", "quote", - "syn 2.0.65", + "syn 2.0.66", "unicase", ] @@ -3269,7 +3254,7 @@ checksum = "2f38a4412a78282e09a2cf38d195ea5420d15ba0602cb375210efbc877243965" dependencies = [ "proc-macro2", "quote", - "syn 2.0.65", + "syn 2.0.66", ] [[package]] @@ -3297,7 +3282,7 @@ dependencies = [ [[package]] name = "pixi" -version = "0.23.0" +version = "0.24.2" dependencies = [ "ahash 0.8.11", "assert_matches", @@ -3307,6 +3292,7 @@ dependencies = [ "clap", "clap-verbosity-flag", "clap_complete", + "concat-idents", "console", "crossbeam-channel", "csv", @@ -3317,6 +3303,7 @@ dependencies = [ "distribution-types", "dunce", "flate2", + "fs_extra", "futures", "http-cache-reqwest", "human_bytes", @@ -3334,9 +3321,10 @@ dependencies = [ "minijinja", "nix 0.28.0", "once_cell", - "parking_lot 0.12.2", + "parking_lot 0.12.3", "pep440_rs", "pep508_rs", + "percent-encoding", "platform-tags", "pypi-types", "pyproject-toml", @@ -3392,7 +3380,7 @@ dependencies = [ "uv-types", "winapi", "xxhash-rust", - "zip 1.3.1", + "zip", ] [[package]] @@ -3414,7 +3402,7 @@ dependencies = [ [[package]] name = "platform-tags" version = "0.0.1" -source = "git+https://github.com/astral-sh/uv?tag=0.1.38#0b23caa18d7eb2f874d73e57b7b4bdf35e881a46" +source = "git+https://github.com/astral-sh/uv?rev=65b17f6e81125064ea04c5cfef685516ab660cf5#65b17f6e81125064ea04c5cfef685516ab660cf5" dependencies = [ "rustc-hash", "serde", @@ -3486,9 +3474,9 @@ checksum = "5b40af805b3121feab8a3c29f04d8ad262fa8e0561883e7653e024ae4479e6de" [[package]] name = "priority-queue" -version = "2.0.2" +version = "2.0.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "509354d8a769e8d0b567d6821b84495c60213162761a732d68ce87c964bd347f" +checksum = "70c501afe3a2e25c9bd219aa56ec1e04cdb3fcdd763055be268778c13fa82c1f" dependencies = [ "autocfg", "equivalent", @@ -3507,9 +3495,9 @@ dependencies = [ [[package]] name = "proc-macro2" -version = "1.0.83" +version = "1.0.84" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0b33eb56c327dec362a9e55b3ad14f9d2f0904fb5a5b03b513ab5465399e9f43" +checksum = "ec96c6a92621310b51366f1e28d05ef11489516e93be030060e5fc12024a49d6" dependencies = [ "unicode-ident", ] @@ -3522,7 +3510,7 @@ checksum = "af066a9c399a26e020ada66a034357a868728e72cd426f3adcd35f80d88d88c8" dependencies = [ "proc-macro2", "quote", - "syn 2.0.65", + "syn 2.0.66", "version_check", "yansi", ] @@ -3550,7 +3538,7 @@ dependencies = [ [[package]] name = "pubgrub" version = "0.2.1" -source = "git+https://github.com/astral-sh/pubgrub?rev=c26e485213e39582c6f2e4d45c0328422670e7a7#c26e485213e39582c6f2e4d45c0328422670e7a7" +source = "git+https://github.com/astral-sh/pubgrub?rev=0e684a874c9fb8f74738cd8875524c80e3d4820b#0e684a874c9fb8f74738cd8875524c80e3d4820b" dependencies = [ "indexmap 2.2.6", "log", @@ -3577,9 +3565,10 @@ dependencies = [ [[package]] name = "pypi-types" version = "0.0.1" -source = "git+https://github.com/astral-sh/uv?tag=0.1.38#0b23caa18d7eb2f874d73e57b7b4bdf35e881a46" +source = "git+https://github.com/astral-sh/uv?rev=65b17f6e81125064ea04c5cfef685516ab660cf5#65b17f6e81125064ea04c5cfef685516ab660cf5" dependencies = [ "chrono", + "git2", "indexmap 2.2.6", "mailparse", "once_cell", @@ -3592,14 +3581,15 @@ dependencies = [ "toml", "tracing", "url", + "uv-git", "uv-normalize", ] [[package]] name = "pyproject-toml" -version = "0.10.0" +version = "0.11.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3b80f889b6d413c3f8963a2c7db03f95dd6e1d85e1074137cb2013ea2faa8898" +checksum = "ef7061023bcb58a0fc4a4bbe9819c13b0dca7c2abc14da14f5ecc1532ab3a36a" dependencies = [ "indexmap 2.2.6", "pep440_rs", @@ -3670,9 +3660,9 @@ dependencies = [ [[package]] name = "rattler" -version = "0.26.0" +version = "0.26.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b659b13fde86dcd6f8b1adc6aeaaf50eb9d082468ff7639aea45bd2c9ce57c97" +checksum = "f3d5504e8afc260cceebb79886032ac146c9344c55fbaf9034ca45a0c00b7447" dependencies = [ "anyhow", "bytes", @@ -3691,7 +3681,8 @@ dependencies = [ "memchr", "memmap2 0.9.4", "once_cell", - "parking_lot 0.12.2", + "parking_lot 0.12.3", + "rattler_cache", "rattler_conda_types", "rattler_digest", "rattler_networking", @@ -3713,10 +3704,35 @@ dependencies = [ ] [[package]] +name = "rattler_cache" +version = "0.1.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "bdad5b1a62c97fe6acbad6f1421eed77bf75f736a5af44a18f0e46d6d1cd5c81" +dependencies = [ + "anyhow", + "chrono", + "digest", + "dirs", + "fxhash", + "itertools 0.12.1", + "parking_lot 0.12.3", + "rattler_conda_types", + "rattler_digest", + "rattler_networking", + "rattler_package_streaming", + "reqwest 0.12.4", + "reqwest-middleware", + "thiserror", + "tokio", + "tracing", + "url", +] + +[[package]] name = "rattler_conda_types" -version = "0.24.0" +version = "0.25.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1ae7656866a9e67ea29627c52b350510e0600176b8cf266759368d22ee6f7490" +checksum = "65d6d35c484af9b1a3ce13ace90de388c8a21b1f832bf2ee97b5681a94178326" dependencies = [ "chrono", "file_url", @@ -3761,9 +3777,9 @@ dependencies = [ [[package]] name = "rattler_lock" -version = "0.22.8" +version = "0.22.12" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a97d2aebc838d2c61c9b57f2694e15f82c35e5198dbbebb2e94f6e92e426727c" +checksum = "5bb54f27b97a03b9b2921bd18967947bc5788a8d653fcd6b6bdd18dad192312f" dependencies = [ "chrono", "file_url", @@ -3791,7 +3807,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "10cef20e8356ea6840294e5754c6a8663b0eb1b97f29d517642f0f99215a2483" dependencies = [ "quote", - "syn 2.0.65", + "syn 2.0.66", ] [[package]] @@ -3827,9 +3843,9 @@ dependencies = [ [[package]] name = "rattler_package_streaming" -version = "0.21.0" +version = "0.21.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "cb3e5f158b303cac143f0c537e237fd934b6aba9f5e26cb9adebbde1af5a4cd0" +checksum = "390c453b80d7904362e121c89f29aee796fb4d38cc7b24fe7ba9e583ef77a27b" dependencies = [ "bzip2", "chrono", @@ -3847,15 +3863,15 @@ dependencies = [ "tokio", "tokio-util", "url", - "zip 0.6.6", + "zip", "zstd", ] [[package]] name = "rattler_repodata_gateway" -version = "0.20.2" +version = "0.20.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "724051407513f63016c76e23f3e9d2487f7fd32a402a811adc49d8db31a669db" +checksum = "810de4b4ef0c75087b77b6425caf869ee435ee392950f71800ec21ac512e576b" dependencies = [ "anyhow", "async-compression", @@ -3879,7 +3895,7 @@ dependencies = [ "md-5", "memmap2 0.9.4", "ouroboros", - "parking_lot 0.12.2", + "parking_lot 0.12.3", "percent-encoding", "pin-project-lite", "rattler_conda_types", @@ -3905,9 +3921,9 @@ dependencies = [ [[package]] name = "rattler_shell" -version = "0.20.5" +version = "0.20.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f98b0b2c7841458bfb1b19eecd98517a2033e441d116201a638d55900a7c9905" +checksum = "e17c8a64079dc3a7b8b0070e0d7c4bee4008bf16d799b8b621a9aa88968650c6" dependencies = [ "enum_dispatch", "indexmap 2.2.6", @@ -3923,9 +3939,9 @@ dependencies = [ [[package]] name = "rattler_solve" -version = "0.23.0" +version = "0.24.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0c58bfe47f340da07709494d04b03e1a7d90c785a8e587171c8c19a0cb29c038" +checksum = "d62f673fe9f9198b4d3235da314d727eff59515cc4db9b0e2452e9bbe959433d" dependencies = [ "chrono", "futures", @@ -3941,9 +3957,9 @@ dependencies = [ [[package]] name = "rattler_virtual_packages" -version = "0.19.12" +version = "0.19.15" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b9a5b06af1855cc4c3257659d9c788f915572c4b1f5b47657772f8d5daf00912" +checksum = "2ae1f4c940a73181b636a2957e665f1c7caeed443ef468ca31d380417f4b52bd" dependencies = [ "archspec", "libloading", @@ -4097,12 +4113,13 @@ dependencies = [ [[package]] name = "requirements-txt" version = "0.0.1" -source = "git+https://github.com/astral-sh/uv?tag=0.1.38#0b23caa18d7eb2f874d73e57b7b4bdf35e881a46" +source = "git+https://github.com/astral-sh/uv?rev=65b17f6e81125064ea04c5cfef685516ab660cf5#65b17f6e81125064ea04c5cfef685516ab660cf5" dependencies = [ + "distribution-types", "fs-err", "pep508_rs", + "pypi-types", "regex", - "serde", "tracing", "unscanny", "url", @@ -4247,10 +4264,11 @@ dependencies = [ [[package]] name = "resolvo" -version = "0.4.1" +version = "0.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d299d168910c5d71f3c0f5441abe38ca4a6ae21f70fae909bfc6bead28f6620f" +checksum = "e7b73dc355efbb88c372550b92bf17d36bf555ecf319a4783a5b8b7c34488bc5" dependencies = [ + "ahash 0.8.11", "bitvec", "elsa", "event-listener 5.3.0", @@ -4362,7 +4380,7 @@ dependencies = [ "regex", "relative-path", "rustc_version", - "syn 2.0.65", + "syn 2.0.66", "unicode-ident", ] @@ -4636,9 +4654,9 @@ checksum = "61697e0a1c7e512e84a621326239844a24d8207b4669b41bc18b32ea5cbf988b" [[package]] name = "serde" -version = "1.0.202" +version = "1.0.203" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "226b61a0d411b2ba5ff6d7f73a476ac4f8bb900373459cd00fab8512828ba395" +checksum = "7253ab4de971e72fb7be983802300c30b5a7f0c2e56fab8abfc6a214307c0094" dependencies = [ "serde_derive", ] @@ -4656,13 +4674,13 @@ dependencies = [ [[package]] name = "serde_derive" -version = "1.0.202" +version = "1.0.203" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "6048858004bcff69094cd972ed40a32500f153bd3be9f716b2eed2e8217c4838" +checksum = "500cbc0ebeb6f46627f50f3f5811ccf6bf00643be300b4c3eabc0ef55dc5b5ba" dependencies = [ "proc-macro2", "quote", - "syn 2.0.65", + "syn 2.0.66", ] [[package]] @@ -4694,7 +4712,7 @@ checksum = "6c64451ba24fc7a6a2d60fc75dd9c83c90903b19028d4eff35e88fc1e86564e9" dependencies = [ "proc-macro2", "quote", - "syn 2.0.65", + "syn 2.0.66", ] [[package]] @@ -4745,7 +4763,7 @@ dependencies = [ "darling", "proc-macro2", "quote", - "syn 2.0.65", + "syn 2.0.66", ] [[package]] @@ -4770,7 +4788,7 @@ dependencies = [ "futures", "log", "once_cell", - "parking_lot 0.12.2", + "parking_lot 0.12.3", "scc", "serial_test_derive", ] @@ -4783,7 +4801,7 @@ checksum = "82fe9db325bcef1fbcde82e078a5cc4efdf787e96b3b9cf45b50b529f2083d67" dependencies = [ "proc-macro2", "quote", - "syn 2.0.65", + "syn 2.0.66", ] [[package]] @@ -4866,12 +4884,6 @@ dependencies = [ ] [[package]] -name = "simd-adler32" -version = "0.3.7" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d66dc143e6b11c1eddc06d5c423cfc97062865baf299914ab64caa38182078fe" - -[[package]] name = "simdutf8" version = "0.1.4" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -5034,7 +5046,7 @@ dependencies = [ "proc-macro2", "quote", "rustversion", - "syn 2.0.65", + "syn 2.0.66", ] [[package]] @@ -5083,9 +5095,9 @@ dependencies = [ [[package]] name = "syn" -version = "2.0.65" +version = "2.0.66" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d2863d96a84c6439701d7a38f9de935ec562c8832cc55d1dde0f513b52fad106" +checksum = "c42f3f41a2de00b01c0aaad383c5a45241efc8b2d1eda5661812fda5f3cdcff5" dependencies = [ "proc-macro2", "quote", @@ -5234,7 +5246,7 @@ checksum = "46c3384250002a6d5af4d114f2845d37b57521033f30d5c3f46c4d70e1197533" dependencies = [ "proc-macro2", "quote", - "syn 2.0.65", + "syn 2.0.66", ] [[package]] @@ -5310,7 +5322,7 @@ dependencies = [ "libc", "mio", "num_cpus", - "parking_lot 0.12.2", + "parking_lot 0.12.3", "pin-project-lite", "signal-hook-registry", "socket2 0.5.7", @@ -5326,7 +5338,7 @@ checksum = "5b8a1e28f2deaa14e508979454cb3a223b10b938b45af148bc0986de36f1923b" dependencies = [ "proc-macro2", "quote", - "syn 2.0.65", + "syn 2.0.66", ] [[package]] @@ -5459,7 +5471,6 @@ dependencies = [ "tokio", "tower-layer", "tower-service", - "tracing", ] [[package]] @@ -5480,7 +5491,6 @@ version = "0.1.40" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "c3523ab5a71916ccf420eebdf5521fcef02141234bbc0b8a49f2fdc4544364ef" dependencies = [ - "log", "pin-project-lite", "tracing-attributes", "tracing-core", @@ -5494,7 +5504,7 @@ checksum = "34704c8d6ebcbc939824180af020566b01a7c01f80641264eba0999f6c2b6be7" dependencies = [ "proc-macro2", "quote", - "syn 2.0.65", + "syn 2.0.66", ] [[package]] @@ -5674,7 +5684,7 @@ dependencies = [ [[package]] name = "uv-auth" version = "0.0.1" -source = "git+https://github.com/astral-sh/uv?tag=0.1.38#0b23caa18d7eb2f874d73e57b7b4bdf35e881a46" +source = "git+https://github.com/astral-sh/uv?rev=65b17f6e81125064ea04c5cfef685516ab660cf5#65b17f6e81125064ea04c5cfef685516ab660cf5" dependencies = [ "anyhow", "async-trait", @@ -5695,16 +5705,17 @@ dependencies = [ [[package]] name = "uv-build" version = "0.0.1" -source = "git+https://github.com/astral-sh/uv?tag=0.1.38#0b23caa18d7eb2f874d73e57b7b4bdf35e881a46" +source = "git+https://github.com/astral-sh/uv?rev=65b17f6e81125064ea04c5cfef685516ab660cf5#65b17f6e81125064ea04c5cfef685516ab660cf5" dependencies = [ "anyhow", "distribution-types", "fs-err", "indoc", - "itertools 0.12.1", + "itertools 0.13.0", "once_cell", "pep440_rs", "pep508_rs", + "pypi-types", "regex", "rustc-hash", "serde", @@ -5724,10 +5735,9 @@ dependencies = [ [[package]] name = "uv-cache" version = "0.0.1" -source = "git+https://github.com/astral-sh/uv?tag=0.1.38#0b23caa18d7eb2f874d73e57b7b4bdf35e881a46" +source = "git+https://github.com/astral-sh/uv?rev=65b17f6e81125064ea04c5cfef685516ab660cf5#65b17f6e81125064ea04c5cfef685516ab660cf5" dependencies = [ "cache-key", - "cachedir", "directories", "distribution-types", "fs-err", @@ -5747,7 +5757,7 @@ dependencies = [ [[package]] name = "uv-client" version = "0.0.1" -source = "git+https://github.com/astral-sh/uv?tag=0.1.38#0b23caa18d7eb2f874d73e57b7b4bdf35e881a46" +source = "git+https://github.com/astral-sh/uv?rev=65b17f6e81125064ea04c5cfef685516ab660cf5#65b17f6e81125064ea04c5cfef685516ab660cf5" dependencies = [ "anyhow", "async-trait", @@ -5794,15 +5804,16 @@ dependencies = [ [[package]] name = "uv-configuration" version = "0.0.1" -source = "git+https://github.com/astral-sh/uv?tag=0.1.38#0b23caa18d7eb2f874d73e57b7b4bdf35e881a46" +source = "git+https://github.com/astral-sh/uv?rev=65b17f6e81125064ea04c5cfef685516ab660cf5#65b17f6e81125064ea04c5cfef685516ab660cf5" dependencies = [ - "anyhow", - "itertools 0.12.1", + "distribution-types", + "either", "pep508_rs", "platform-tags", "rustc-hash", "serde", "serde_json", + "tracing", "uv-auth", "uv-normalize", ] @@ -5810,20 +5821,20 @@ dependencies = [ [[package]] name = "uv-dispatch" version = "0.0.1" -source = "git+https://github.com/astral-sh/uv?tag=0.1.38#0b23caa18d7eb2f874d73e57b7b4bdf35e881a46" +source = "git+https://github.com/astral-sh/uv?rev=65b17f6e81125064ea04c5cfef685516ab660cf5#65b17f6e81125064ea04c5cfef685516ab660cf5" dependencies = [ "anyhow", "distribution-types", "futures", "install-wheel-rs", - "itertools 0.12.1", - "pep508_rs", + "itertools 0.13.0", "rustc-hash", "tracing", "uv-build", "uv-cache", "uv-client", "uv-configuration", + "uv-distribution", "uv-installer", "uv-interpreter", "uv-resolver", @@ -5833,7 +5844,7 @@ dependencies = [ [[package]] name = "uv-distribution" version = "0.0.1" -source = "git+https://github.com/astral-sh/uv?tag=0.1.38#0b23caa18d7eb2f874d73e57b7b4bdf35e881a46" +source = "git+https://github.com/astral-sh/uv?rev=65b17f6e81125064ea04c5cfef685516ab660cf5#65b17f6e81125064ea04c5cfef685516ab660cf5" dependencies = [ "anyhow", "cache-key", @@ -5867,13 +5878,13 @@ dependencies = [ "uv-git", "uv-normalize", "uv-types", - "zip 1.3.1", + "zip", ] [[package]] name = "uv-extract" version = "0.0.1" -source = "git+https://github.com/astral-sh/uv?tag=0.1.38#0b23caa18d7eb2f874d73e57b7b4bdf35e881a46" +source = "git+https://github.com/astral-sh/uv?rev=65b17f6e81125064ea04c5cfef685516ab660cf5#65b17f6e81125064ea04c5cfef685516ab660cf5" dependencies = [ "async-compression", "async_zip", @@ -5889,24 +5900,26 @@ dependencies = [ "tokio-tar", "tokio-util", "tracing", - "zip 1.3.1", + "zip", ] [[package]] name = "uv-fs" version = "0.0.1" -source = "git+https://github.com/astral-sh/uv?tag=0.1.38#0b23caa18d7eb2f874d73e57b7b4bdf35e881a46" +source = "git+https://github.com/astral-sh/uv?rev=65b17f6e81125064ea04c5cfef685516ab660cf5#65b17f6e81125064ea04c5cfef685516ab660cf5" dependencies = [ "backoff", + "cachedir", "dunce", + "either", "encoding_rs_io", "fs-err", "fs2", "junction", "once_cell", "path-absolutize", + "path-slash", "tempfile", - "tokio", "tracing", "urlencoding", "uv-warnings", @@ -5915,7 +5928,7 @@ dependencies = [ [[package]] name = "uv-git" version = "0.0.1" -source = "git+https://github.com/astral-sh/uv?tag=0.1.38#0b23caa18d7eb2f874d73e57b7b4bdf35e881a46" +source = "git+https://github.com/astral-sh/uv?rev=65b17f6e81125064ea04c5cfef685516ab660cf5#65b17f6e81125064ea04c5cfef685516ab660cf5" dependencies = [ "anyhow", "base64 0.22.1", @@ -5938,10 +5951,12 @@ dependencies = [ [[package]] name = "uv-installer" version = "0.0.1" -source = "git+https://github.com/astral-sh/uv?tag=0.1.38#0b23caa18d7eb2f874d73e57b7b4bdf35e881a46" +source = "git+https://github.com/astral-sh/uv?rev=65b17f6e81125064ea04c5cfef685516ab660cf5#65b17f6e81125064ea04c5cfef685516ab660cf5" dependencies = [ "anyhow", "async-channel", + "cache-key", + "distribution-filename", "distribution-types", "fs-err", "futures", @@ -5961,11 +5976,11 @@ dependencies = [ "tracing", "url", "uv-cache", - "uv-client", "uv-configuration", "uv-distribution", "uv-extract", "uv-fs", + "uv-git", "uv-interpreter", "uv-normalize", "uv-types", @@ -5976,28 +5991,38 @@ dependencies = [ [[package]] name = "uv-interpreter" version = "0.0.1" -source = "git+https://github.com/astral-sh/uv?tag=0.1.38#0b23caa18d7eb2f874d73e57b7b4bdf35e881a46" +source = "git+https://github.com/astral-sh/uv?rev=65b17f6e81125064ea04c5cfef685516ab660cf5#65b17f6e81125064ea04c5cfef685516ab660cf5" dependencies = [ + "anyhow", "cache-key", "configparser", "fs-err", + "futures", "install-wheel-rs", + "itertools 0.13.0", "once_cell", "pep440_rs", "pep508_rs", "platform-tags", "pypi-types", "regex", + "reqwest 0.12.4", + "reqwest-middleware", "rmp-serde", "same-file", "serde", "serde_json", "tempfile", "thiserror", + "tokio-util", "tracing", + "url", "uv-cache", + "uv-client", + "uv-configuration", + "uv-extract", "uv-fs", - "uv-toolchain", + "uv-state", "uv-warnings", "which", "winapi", @@ -6006,7 +6031,7 @@ dependencies = [ [[package]] name = "uv-normalize" version = "0.0.1" -source = "git+https://github.com/astral-sh/uv?tag=0.1.38#0b23caa18d7eb2f874d73e57b7b4bdf35e881a46" +source = "git+https://github.com/astral-sh/uv?rev=65b17f6e81125064ea04c5cfef685516ab660cf5#65b17f6e81125064ea04c5cfef685516ab660cf5" dependencies = [ "rkyv", "serde", @@ -6015,7 +6040,7 @@ dependencies = [ [[package]] name = "uv-resolver" version = "0.0.1" -source = "git+https://github.com/astral-sh/uv?tag=0.1.38#0b23caa18d7eb2f874d73e57b7b4bdf35e881a46" +source = "git+https://github.com/astral-sh/uv?rev=65b17f6e81125064ea04c5cfef685516ab660cf5#65b17f6e81125064ea04c5cfef685516ab660cf5" dependencies = [ "anstream", "anyhow", @@ -6029,7 +6054,7 @@ dependencies = [ "futures", "indexmap 2.2.6", "install-wheel-rs", - "itertools 0.12.1", + "itertools 0.13.0", "once-map", "once_cell", "owo-colors", @@ -6042,6 +6067,7 @@ dependencies = [ "requirements-txt", "rkyv", "rustc-hash", + "serde", "textwrap", "thiserror", "tokio", @@ -6052,6 +6078,7 @@ dependencies = [ "uv-client", "uv-configuration", "uv-distribution", + "uv-git", "uv-interpreter", "uv-normalize", "uv-types", @@ -6059,32 +6086,19 @@ dependencies = [ ] [[package]] -name = "uv-toolchain" -version = "0.1.0" -source = "git+https://github.com/astral-sh/uv?tag=0.1.38#0b23caa18d7eb2f874d73e57b7b4bdf35e881a46" +name = "uv-state" +version = "0.0.1" +source = "git+https://github.com/astral-sh/uv?rev=65b17f6e81125064ea04c5cfef685516ab660cf5#65b17f6e81125064ea04c5cfef685516ab660cf5" dependencies = [ - "anyhow", + "directories", "fs-err", - "futures", - "once_cell", - "pep440_rs", - "pep508_rs", - "reqwest 0.12.4", - "reqwest-middleware", "tempfile", - "thiserror", - "tokio-util", - "tracing", - "url", - "uv-client", - "uv-extract", - "uv-fs", ] [[package]] name = "uv-types" version = "0.0.1" -source = "git+https://github.com/astral-sh/uv?tag=0.1.38#0b23caa18d7eb2f874d73e57b7b4bdf35e881a46" +source = "git+https://github.com/astral-sh/uv?rev=65b17f6e81125064ea04c5cfef685516ab660cf5#65b17f6e81125064ea04c5cfef685516ab660cf5" dependencies = [ "anyhow", "distribution-types", @@ -6092,7 +6106,6 @@ dependencies = [ "pep440_rs", "pep508_rs", "pypi-types", - "requirements-txt", "rustc-hash", "thiserror", "url", @@ -6104,24 +6117,21 @@ dependencies = [ [[package]] name = "uv-version" -version = "0.1.38" -source = "git+https://github.com/astral-sh/uv?tag=0.1.38#0b23caa18d7eb2f874d73e57b7b4bdf35e881a46" +version = "0.2.4" +source = "git+https://github.com/astral-sh/uv?rev=65b17f6e81125064ea04c5cfef685516ab660cf5#65b17f6e81125064ea04c5cfef685516ab660cf5" [[package]] name = "uv-virtualenv" version = "0.0.4" -source = "git+https://github.com/astral-sh/uv?tag=0.1.38#0b23caa18d7eb2f874d73e57b7b4bdf35e881a46" +source = "git+https://github.com/astral-sh/uv?rev=65b17f6e81125064ea04c5cfef685516ab660cf5#65b17f6e81125064ea04c5cfef685516ab660cf5" dependencies = [ - "anstream", - "cachedir", - "directories", "fs-err", + "itertools 0.13.0", "pathdiff", "platform-tags", "pypi-types", "thiserror", "tracing", - "uv-cache", "uv-fs", "uv-interpreter", "uv-version", @@ -6130,7 +6140,7 @@ dependencies = [ [[package]] name = "uv-warnings" version = "0.0.1" -source = "git+https://github.com/astral-sh/uv?tag=0.1.38#0b23caa18d7eb2f874d73e57b7b4bdf35e881a46" +source = "git+https://github.com/astral-sh/uv?rev=65b17f6e81125064ea04c5cfef685516ab660cf5#65b17f6e81125064ea04c5cfef685516ab660cf5" dependencies = [ "anstream", "once_cell", @@ -6208,7 +6218,7 @@ dependencies = [ "once_cell", "proc-macro2", "quote", - "syn 2.0.65", + "syn 2.0.66", "wasm-bindgen-shared", ] @@ -6242,7 +6252,7 @@ checksum = "e94f17b526d0a461a191c78ea52bbce64071ed5c04c9ffe424dcb38f74171bb7" dependencies = [ "proc-macro2", "quote", - "syn 2.0.65", + "syn 2.0.66", "wasm-bindgen-backend", "wasm-bindgen-shared", ] @@ -6398,7 +6408,7 @@ checksum = "f6fc35f58ecd95a9b71c4f2329b911016e6bec66b3f2e6a4aad86bd2e99e2f9b" dependencies = [ "proc-macro2", "quote", - "syn 2.0.65", + "syn 2.0.66", ] [[package]] @@ -6409,7 +6419,7 @@ checksum = "08990546bf4edef8f431fa6326e032865f27138718c587dc21bc0265bbcb57cc" dependencies = [ "proc-macro2", "quote", - "syn 2.0.65", + "syn 2.0.66", ] [[package]] @@ -6729,14 +6739,14 @@ checksum = "15e934569e47891f7d9411f1a451d947a60e000ab3bd24fbb970f000387d1b3b" dependencies = [ "proc-macro2", "quote", - "syn 2.0.65", + "syn 2.0.66", ] [[package]] name = "zeroize" -version = "1.7.0" +version = "1.8.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "525b4ec142c6b68a2d10f01f7bbf6755599ca3f81ea53b8431b7dd348f5fdb2d" +checksum = "ced3678a2879b30306d323f4542626697a464a97c0a07c9aebf7ebca65cd4dde" [[package]] name = "zip" @@ -6752,37 +6762,6 @@ dependencies = [ ] [[package]] -name = "zip" -version = "1.3.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1b7a5a9285bd4ee13bdeb3f8a4917eb46557e53f270c783849db8bef37b0ad00" -dependencies = [ - "arbitrary", - "crc32fast", - "crossbeam-utils", - "displaydoc", - "flate2", - "indexmap 2.2.6", - "thiserror", - "time", - "zopfli", -] - -[[package]] -name = "zopfli" -version = "0.8.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e5019f391bac5cf252e93bbcc53d039ffd62c7bfb7c150414d61369afe57e946" -dependencies = [ - "bumpalo", - "crc32fast", - "lockfree-object-pool", - "log", - "once_cell", - "simd-adler32", -] - -[[package]] name = "zstd" version = "0.13.1" source = "registry+https://github.com/rust-lang/crates.io-index" diff --git a/pkgs/by-name/pi/pixi/package.nix b/pkgs/by-name/pi/pixi/package.nix index 86abbff58246a..19206ad0146b1 100644 --- a/pkgs/by-name/pi/pixi/package.nix +++ b/pkgs/by-name/pi/pixi/package.nix @@ -13,21 +13,21 @@ rustPlatform.buildRustPackage rec { pname = "pixi"; - version = "0.23.0"; + version = "0.24.2"; src = fetchFromGitHub { owner = "prefix-dev"; repo = "pixi"; rev = "v${version}"; - hash = "sha256-uLlScqcTU9nnBQiufRo+eee1TNyP5R52oI1jUaH6L1M="; + hash = "sha256-Qlr4CcrCq29ig3FPFWCR5oOtFrbREm/7zyGXUB3XL98="; }; cargoLock = { lockFile = ./Cargo.lock; outputHashes = { "async_zip-0.0.17" = "sha256-Q5fMDJrQtob54CTII3+SXHeozy5S5s3iLOzntevdGOs="; - "cache-key-0.0.1" = "sha256-fbaIeM4wgwi/3S8s9KRux8wKe6FbCBNPZFPekmrq2jA="; - "pubgrub-0.2.1" = "sha256-sqC7R2mtqymYFULDW0wSbM/MKCZc8rP7Yy/gaQpjYEI="; + "cache-key-0.0.1" = "sha256-lJJqjxyAzGQKZi6RtzZ7A9pCAOyIJnstHoS8jlUWeGA="; + "pubgrub-0.2.1" = "sha256-mAPyo2R996ymzCt6TAX2G7xU1C3vDGjYF0z7R8lI1yg="; }; }; @@ -71,8 +71,12 @@ rustPlatform.buildRustPackage rec { "--skip=test_incremental_lock_file" "--skip=test_purl_are_added_for_pypi" - # `/usr/bin/env` required + # `/usr/bin/env` is not available during build. + # Error: /usr/bin/env: No such file or directory + "--skip=test_clean_env" + "--skip=test_full_env_activation" "--skip=test_task_with_env" + "--skip=test_pixi_only_env_activation" "--skip=cli::shell_hook::tests::test_environment_json" ]; diff --git a/pkgs/by-name/po/poutine/package.nix b/pkgs/by-name/po/poutine/package.nix index 617454ae468ee..6ebd925ff2eb7 100644 --- a/pkgs/by-name/po/poutine/package.nix +++ b/pkgs/by-name/po/poutine/package.nix @@ -1,7 +1,9 @@ { lib, + stdenv, buildGoModule, fetchFromGitHub, + installShellFiles, }: buildGoModule rec { @@ -22,6 +24,15 @@ buildGoModule rec { "-w" ]; + nativeBuildInputs = [ installShellFiles ]; + + postInstall = lib.optionalString (stdenv.buildPlatform.canExecute stdenv.hostPlatform) '' + installShellCompletion --cmd ${meta.mainProgram} \ + --bash <($out/bin/${meta.mainProgram} completion bash) \ + --fish <($out/bin/${meta.mainProgram} completion fish) \ + --zsh <($out/bin/${meta.mainProgram} completion zsh) + ''; + meta = with lib; { description = "Security scanner that detects misconfigurations and vulnerabilities in build pipelines of repositories"; homepage = "https://github.com/boostsecurityio/poutine"; diff --git a/pkgs/by-name/po/powerpipe/package.nix b/pkgs/by-name/po/powerpipe/package.nix index ecc090646ad2d..353d2a5ba4932 100644 --- a/pkgs/by-name/po/powerpipe/package.nix +++ b/pkgs/by-name/po/powerpipe/package.nix @@ -11,16 +11,16 @@ buildGoModule rec { pname = "powerpipe"; - version = "0.3.1"; + version = "0.4.0"; src = fetchFromGitHub { owner = "turbot"; repo = "powerpipe"; rev = "refs/tags/v${version}"; - hash = "sha256-tvGCgpuWMCzBldgxf4caKiUe7EpraJJeOVBwNqU60oc="; + hash = "sha256-KJ024dIU0GmeHCFa/pbyFIA+LitaudHC+NBGg8yNWxM="; }; - vendorHash = "sha256-C3memfHNSlkiwhwB5zCXCtUOII3IjFD5FHGd8uPGmpU="; + vendorHash = "sha256-XALFXUeWrS4nt+ONToCfYXvLWuk7ZhLWvJidnATcWtM="; proxyVendor = true; nativeBuildInputs = [ diff --git a/pkgs/by-name/pr/pretix/package.nix b/pkgs/by-name/pr/pretix/package.nix index 8234f49fcf134..f4e744af6748f 100644 --- a/pkgs/by-name/pr/pretix/package.nix +++ b/pkgs/by-name/pr/pretix/package.nix @@ -14,6 +14,15 @@ let packageOverrides = self: super: { django = super.django_4; + django-oauth-toolkit = super.django-oauth-toolkit.overridePythonAttrs (oldAttrs: { + version = "2.3.0"; + src = fetchFromGitHub { + inherit (oldAttrs.src) owner repo; + rev = "refs/tags/v${version}"; + hash = "sha256-oGg5MD9p4PSUVkt5pGLwjAF4SHHf4Aqr+/3FsuFaybY="; + }; + }); + stripe = super.stripe.overridePythonAttrs rec { version = "7.9.0"; @@ -81,7 +90,6 @@ python.pkgs.buildPythonApplication rec { --replace-fail psycopg2-binary psycopg2 \ --replace-fail vat_moss_forked==2020.3.20.0.11.0 vat-moss \ --replace-fail "bleach==5.0.*" bleach \ - --replace-fail "django-oauth-toolkit==2.3.*" django-oauth-toolkit \ --replace-fail "djangorestframework==3.15.*" djangorestframework \ --replace-fail "dnspython==2.6.*" dnspython \ --replace-fail "importlib_metadata==7.*" importlib_metadata \ diff --git a/pkgs/by-name/pr/protoc-gen-js/package.nix b/pkgs/by-name/pr/protoc-gen-js/package.nix index 0df0cb62a83e1..08fb3345fedca 100644 --- a/pkgs/by-name/pr/protoc-gen-js/package.nix +++ b/pkgs/by-name/pr/protoc-gen-js/package.nix @@ -33,6 +33,6 @@ buildBazelPackage rec { platforms = platforms.linux ++ platforms.darwin; license = with licenses; [ asl20 bsd3 ]; sourceProvenance = [ sourceTypes.fromSource ]; - maintainers = with maintainers; [ Sorixelle ]; + maintainers = [ ]; }; } diff --git a/pkgs/by-name/pr/prowler/package.nix b/pkgs/by-name/pr/prowler/package.nix index a8c5fb546e79e..cf843d8ab1c75 100644 --- a/pkgs/by-name/pr/prowler/package.nix +++ b/pkgs/by-name/pr/prowler/package.nix @@ -23,6 +23,7 @@ python3.pkgs.buildPythonApplication rec { "azure-mgmt-containerservice" "azure-mgmt-network" "azure-mgmt-security" + "azure-mgmt-storage" "azure-storage-blob" "boto3" "botocore" diff --git a/pkgs/by-name/pt/ptyxis/package.nix b/pkgs/by-name/pt/ptyxis/package.nix index e5c51f1b75083..18a9da1fc7cf1 100644 --- a/pkgs/by-name/pt/ptyxis/package.nix +++ b/pkgs/by-name/pt/ptyxis/package.nix @@ -15,14 +15,14 @@ }: let - version = "46.2"; + version = "46.3"; src = fetchFromGitLab { domain = "gitlab.gnome.org"; owner = "chergert"; repo = "ptyxis"; rev = version; - hash = "sha256-/n/S2ws6qsVwTXX96MPa+/ISozDDu8A1wkD1g3dmAtQ="; + hash = "sha256-DKZgnistOv6eFWtqYPtMc1tQJWovCWIqrqGgs9uWu5k="; }; vte-gtk4-patched = vte-gtk4.overrideAttrs (prev: { diff --git a/pkgs/by-name/py/pywalfox-native/package.nix b/pkgs/by-name/py/pywalfox-native/package.nix index 7f7884de57ec9..70459afdc3e3a 100644 --- a/pkgs/by-name/py/pywalfox-native/package.nix +++ b/pkgs/by-name/py/pywalfox-native/package.nix @@ -1,13 +1,17 @@ -{ lib, python3, fetchPypi }: - -python3.pkgs.buildPythonApplication rec { +{ + lib, + fetchFromGitHub, + python3, +}: +python3.pkgs.buildPythonApplication { pname = "pywalfox-native"; version = "2.7.4"; - src = fetchPypi { - inherit version; - pname = "pywalfox"; - hash = "sha256-Wec9fic4lXT7gBY04D2EcfCb/gYoZcrYA/aMRWaA7WY="; + src = fetchFromGitHub { + owner = "Frewacom"; + repo = "pywalfox-native"; + rev = "7ecbbb193e6a7dab424bf3128adfa7e2d0fa6ff9"; + hash = "sha256-i1DgdYmNVvG+mZiFiBmVHsQnFvfDFOFTGf0GEy81lpE="; }; pythonImportsCheck = [ "pywalfox" ]; diff --git a/pkgs/by-name/qd/qdrant-web-ui/package.nix b/pkgs/by-name/qd/qdrant-web-ui/package.nix index 333d9eed042d2..bde3994b9170f 100644 --- a/pkgs/by-name/qd/qdrant-web-ui/package.nix +++ b/pkgs/by-name/qd/qdrant-web-ui/package.nix @@ -5,16 +5,16 @@ }: buildNpmPackage rec { pname = "qdrant-web-ui"; - version = "0.1.28"; + version = "0.1.29"; src = fetchFromGitHub { owner = "qdrant"; repo = "qdrant-web-ui"; rev = "refs/tags/v${version}"; - hash = "sha256-jbr1PdoYcBxT7EOksLOPYNGz+GG5HVG406S+GRyWeiE="; + hash = "sha256-ni+78odD4PnkqlIzTpHsu16Lk6m9ql/Bq8Bm2qWxHj0="; }; - npmDepsHash = "sha256-8sk2QyunSrKE5/kjSoo0whdVbY9IXCF+n7ZIjP4Mgq8="; + npmDepsHash = "sha256-Lg4nNw6wKb5tBUPCIUbriExQs3LKsF0bCCY3S136Epk="; npmBuildScript = "build-qdrant"; diff --git a/pkgs/by-name/ra/radicale/package.nix b/pkgs/by-name/ra/radicale/package.nix index 64d85ea2b939b..719d49ab3a0e3 100644 --- a/pkgs/by-name/ra/radicale/package.nix +++ b/pkgs/by-name/ra/radicale/package.nix @@ -6,25 +6,25 @@ python3.pkgs.buildPythonApplication rec { pname = "radicale"; - version = "3.2.1"; + version = "3.2.2"; pyproject = true; src = fetchFromGitHub { owner = "Kozea"; repo = "Radicale"; - rev = "v${version}"; - hash = "sha256-OUwznn71xl8oWkw90fT1NYYZOuD83k+B5zLhygp1VQQ="; + rev = "v${version}-version"; + hash = "sha256-ZdcV2t2F2UgjGC+aTfynP2DbPRgzOIADDebY64nj3NA="; }; postPatch = '' sed -i '/addopts/d' setup.cfg ''; - nativeBuildInputs = with python3.pkgs; [ + build-system = with python3.pkgs; [ setuptools ]; - propagatedBuildInputs = with python3.pkgs; [ + dependencies = with python3.pkgs; [ defusedxml passlib vobject diff --git a/pkgs/by-name/ra/radicle-node/package.nix b/pkgs/by-name/ra/radicle-node/package.nix index 020c24e0a4284..05324f6ff44a5 100644 --- a/pkgs/by-name/ra/radicle-node/package.nix +++ b/pkgs/by-name/ra/radicle-node/package.nix @@ -16,15 +16,15 @@ , xdg-utils }: rustPlatform.buildRustPackage rec { pname = "radicle-node"; - version = "1.0.0-rc.10"; + version = "1.0.0-rc.11"; env.RADICLE_VERSION = version; src = fetchgit { url = "https://seed.radicle.xyz/z3gqcJUoA1n9HaHKufZs5FCSGazv5.git"; rev = "refs/namespaces/z6MksFqXN3Yhqk8pTJdUGLwATkRfQvwZXPqR2qMEhbS9wzpT/refs/tags/v${version}"; - hash = "sha256-bkP9/S9luT0tgESabt3KaaEUObx6SGxz87XLOIIrDNw="; + hash = "sha256-P1Gg2uk87ppco7CAPjEqN0uqgb0K8apOSC7cfdgaT0Y="; }; - cargoHash = "sha256-FDxXFhQmpWwkvAMawBTwuSXOz1UMqP83Csk9N0atlN8="; + cargoHash = "sha256-M01NjqvMSaa3+YPb4vDtIucBeF5BYx3cpmMoLJOwRsI="; nativeBuildInputs = [ asciidoctor installShellFiles makeWrapper ]; nativeCheckInputs = [ git ]; diff --git a/pkgs/by-name/re/redict/package.nix b/pkgs/by-name/re/redict/package.nix index 7d045cdc6fcb6..54820d6eb096b 100644 --- a/pkgs/by-name/re/redict/package.nix +++ b/pkgs/by-name/re/redict/package.nix @@ -88,7 +88,7 @@ stdenv.mkDerivation (finalAttrs: { license = licenses.lgpl3Only; platforms = platforms.all; changelog = "https://codeberg.org/redict/redict/releases/tag/${finalAttrs.version}"; - maintainers = with maintainers; [ yuka gmemstr ]; + maintainers = with maintainers; [ yuka ]; mainProgram = "redict-cli"; }; }) diff --git a/pkgs/by-name/re/redocly/package.nix b/pkgs/by-name/re/redocly/package.nix index 948c783d5fe99..2d23539271eea 100644 --- a/pkgs/by-name/re/redocly/package.nix +++ b/pkgs/by-name/re/redocly/package.nix @@ -8,16 +8,16 @@ buildNpmPackage rec { pname = "redocly"; - version = "1.14.0"; + version = "1.15.0"; src = fetchFromGitHub { owner = "Redocly"; repo = "redocly-cli"; rev = "@redocly/cli@${version}"; - hash = "sha256-R5GSkRbe7GpdQ9y3PvRcWcl27HgEJMHyOLgR0zVF6jA="; + hash = "sha256-qGjFueL05f7DgDa0/B+w1Ix2tRx7PicMneub2sWJ7Gw="; }; - npmDepsHash = "sha256-o1Z8v/LR77TUKufv60B/P4XWR7Ebf0PTX7ee3YgjnBs="; + npmDepsHash = "sha256-pO1ewVInuPCLDk2V4HRqOCFmT1VTVa/qRkJ5rxREWMU="; npmBuildScript = "prepare"; diff --git a/pkgs/by-name/re/release-plz/package.nix b/pkgs/by-name/re/release-plz/package.nix index f2ea059714da1..966a989d2b136 100644 --- a/pkgs/by-name/re/release-plz/package.nix +++ b/pkgs/by-name/re/release-plz/package.nix @@ -9,16 +9,16 @@ }: rustPlatform.buildRustPackage rec { pname = "release-plz"; - version = "0.3.72"; + version = "0.3.73"; src = fetchFromGitHub { owner = "MarcoIeni"; repo = "release-plz"; rev = "release-plz-v${version}"; - hash = "sha256-wc/+X/P/FKDpvw0U7ItIgzHbqsEnngHk4wt7Pjzk594="; + hash = "sha256-QRKXg/6hiF7P3yQ6wFZ5JG2aRaGX7rQU0DB2L97LKsg="; }; - cargoHash = "sha256-RB+NXuASfpx6tZJfG18Hj7JOfXK9FIqSD7QaDfGUHi4="; + cargoHash = "sha256-aDm4hWosaeAI21iw2Uo315u01kjXCK+LaBwt9jlwgYw="; nativeBuildInputs = [ installShellFiles pkg-config perl ]; buildInputs = [ openssl ]; diff --git a/pkgs/by-name/re/renode-dts2repl/package.nix b/pkgs/by-name/re/renode-dts2repl/package.nix index 92bf643dc4219..12d84cb6d424a 100644 --- a/pkgs/by-name/re/renode-dts2repl/package.nix +++ b/pkgs/by-name/re/renode-dts2repl/package.nix @@ -6,14 +6,14 @@ python3.pkgs.buildPythonApplication { pname = "renode-dts2repl"; - version = "0-unstable-2024-06-11"; + version = "0-unstable-2024-06-21"; pyproject = true; src = fetchFromGitHub { owner = "antmicro"; repo = "dts2repl"; - rev = "7360c07d2ef1e32661a0efa04323e799d400a58e"; - hash = "sha256-lN3IgLOAeMexWG5zQB9RxRld7Snl3aqNJt3fZV5hdnM="; + rev = "57a24220c5be33b2974c885bbe2f680c3799f3ce"; + hash = "sha256-0KmJujGcsElzsVU0tsXtXLzh3oL8wBwai8gtxUu02H0="; }; nativeBuildInputs = [ diff --git a/pkgs/by-name/re/renode/package.nix b/pkgs/by-name/re/renode/package.nix index c296d7c85967d..561dfca37aa58 100644 --- a/pkgs/by-name/re/renode/package.nix +++ b/pkgs/by-name/re/renode/package.nix @@ -23,8 +23,8 @@ let src = fetchFromGitHub { owner = "robotframework"; repo = "robotframework"; - rev = "v6.0.2"; - hash = "sha256-c7pPcDgqyqWQtiMbLQbQd0nAgx4TIFUFHrlBVDNdr8M="; + rev = "v6.1"; + hash = "sha256-l1VupBKi52UWqJMisT2CVnXph3fGxB63mBVvYdM1NWE="; }; })) ]; diff --git a/pkgs/by-name/ro/roddhjav-apparmor-rules/package.nix b/pkgs/by-name/ro/roddhjav-apparmor-rules/package.nix index 18aee65f02103..d1218c05c9c10 100644 --- a/pkgs/by-name/ro/roddhjav-apparmor-rules/package.nix +++ b/pkgs/by-name/ro/roddhjav-apparmor-rules/package.nix @@ -7,13 +7,13 @@ stdenvNoCC.mkDerivation { pname = "roddhjav-apparmor-rules"; - version = "0-unstable-2024-06-12"; + version = "0-unstable-2024-06-16"; src = fetchFromGitHub { owner = "roddhjav"; repo = "apparmor.d"; - rev = "327c1dec332aaf2f6a9ef59e2243fdf517a0956a"; - hash = "sha256-AIMmwqa7Kh4/zbTAiHVfOi4LwXO9eInaGCjUx9MRa1o="; + rev = "747292e95402298553dec3b2dd923a6c62ad2077"; + hash = "sha256-SWNo6qJNR4XGZc79JQXsab0vppDf1D5GXH/iMmdi5WQ="; }; dontConfigure = true; diff --git a/pkgs/by-name/rq/rquickshare/package.nix b/pkgs/by-name/rq/rquickshare/package.nix index 89effd8427b04..6f47876dc2e4f 100644 --- a/pkgs/by-name/rq/rquickshare/package.nix +++ b/pkgs/by-name/rq/rquickshare/package.nix @@ -5,10 +5,10 @@ }: let pname = "rquickshare"; - version = "0.7.1"; + version = "0.8.2"; src = fetchurl { url = "https://github.com/Martichou/rquickshare/releases/download/v${version}/r-quick-share_${version}_amd64.AppImage"; - hash = "sha256-716d7T4nbs/dDS4KVGTADCpLO31U8iq6hDVD+c7Ks1I="; + hash = "sha256-0r8G3f46nHfTeReai4mWCykyx65AoaoGc0L7nrGEhTQ="; }; appimageContents = appimageTools.extractType2 { inherit pname version src; }; in diff --git a/pkgs/by-name/ru/rusty-diceware/package.nix b/pkgs/by-name/ru/rusty-diceware/package.nix new file mode 100644 index 0000000000000..acc271e0f7a1f --- /dev/null +++ b/pkgs/by-name/ru/rusty-diceware/package.nix @@ -0,0 +1,29 @@ +{ fetchFromGitLab +, lib +, rustPlatform +}: + +rustPlatform.buildRustPackage rec { + pname = "rusty-diceware"; + version = "0.5.8"; + + src = fetchFromGitLab { + owner = "yuvallanger"; + repo = "rusty-diceware"; + rev = "diceware-v${version}"; + hash = "sha256-GDWvHHl4EztTaR0jI4XL1I9qE2KSL+q9C8IvLWQF4Ys="; + }; + + cargoHash = "sha256-5SAKrNgFG3O+hLKvEGhawyRi7wiEPWmxPsLtEX0OkDM="; + + doCheck = true; + + meta = with lib; { + description = "Commandline diceware, with or without dice, written in Rustlang"; + homepage = "https://gitlab.com/yuvallanger/rusty-diceware"; + changelog = "https://gitlab.com/yuvallanger/rusty-diceware/-/blob/v${version}/CHANGELOG.md?ref_type=heads"; + license = licenses.gpl3; + maintainers = with maintainers; [ cherrykitten ]; + mainProgram = "diceware"; + }; +} diff --git a/pkgs/by-name/ry/ryujinx/deps.nix b/pkgs/by-name/ry/ryujinx/deps.nix index 3224a9e49537b..fe5120574047b 100644 --- a/pkgs/by-name/ry/ryujinx/deps.nix +++ b/pkgs/by-name/ry/ryujinx/deps.nix @@ -62,7 +62,7 @@ (fetchNuGet { pname = "Microsoft.IdentityModel.JsonWebTokens"; version = "7.6.0"; sha256 = "11znwbbg44hhz3ly6j6q81qz83yqf97jj5zhpldng5zq0h791srl"; }) (fetchNuGet { pname = "Microsoft.IdentityModel.Logging"; version = "7.6.0"; sha256 = "1slkzygcn4abpqip4rmi73h9096ihjkkaiwgmkaiba9pidn9lzlx"; }) (fetchNuGet { pname = "Microsoft.IdentityModel.Tokens"; version = "7.6.0"; sha256 = "1blj1ayw9qpjpsnb4k95s03pdkin0032mxgznfaw1z1qhhiqdnsi"; }) - (fetchNuGet { pname = "Microsoft.IO.RecyclableMemoryStream"; version = "3.0.0"; sha256 = "1zl39k27r4zq75r1x1zr1yl4nzxpkxdnnv6dwd4qp0xr22my85aq"; }) + (fetchNuGet { pname = "Microsoft.IO.RecyclableMemoryStream"; version = "3.0.1"; sha256 = "12hiz0c7xqff3a0kfmmr11vdi38ba1my06xs4p5galqwj7zn0wds"; }) (fetchNuGet { pname = "Microsoft.NET.Test.Sdk"; version = "17.9.0"; sha256 = "1lls1fly2gr1n9n1xyl9k33l2v4pwfmylyzkq8v4v5ldnwkl1zdb"; }) (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "1.1.0"; sha256 = "08vh1r12g6ykjygq5d3vq09zylgb84l63k49jc4v8faw9g93iqqm"; }) (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "2.0.0"; sha256 = "1fk2fk2639i7nzy58m9dvpdnzql4vb8yl8vr19r2fp8lmj9w2jr0"; }) diff --git a/pkgs/by-name/ry/ryujinx/package.nix b/pkgs/by-name/ry/ryujinx/package.nix index 6687554744c21..afe4fbca8213d 100644 --- a/pkgs/by-name/ry/ryujinx/package.nix +++ b/pkgs/by-name/ry/ryujinx/package.nix @@ -26,13 +26,13 @@ buildDotnetModule rec { pname = "ryujinx"; - version = "1.1.1330"; # Based off of the official github actions builds: https://github.com/Ryujinx/Ryujinx/actions/workflows/release.yml + version = "1.1.1336"; # Based off of the official github actions builds: https://github.com/Ryujinx/Ryujinx/actions/workflows/release.yml src = fetchFromGitHub { owner = "Ryujinx"; repo = "Ryujinx"; - rev = "c0f2491eaee7eb1088605f5bda8055b941a14f99"; - sha256 = "0h6gkcgixxfrlcvwsfq6yrnscpqr00iyqc5pb1pyzjrxy6z5yb2v"; + rev = "0afa8f2c14f046b46ac5ba14c96f3a5ce523ba16"; + sha256 = "1n8f0ijj8amp1nvw2pm2gric51i21kv2gl9r6vwnp64hi08vczqg"; }; dotnet-sdk = dotnetCorePackages.sdk_8_0; diff --git a/pkgs/by-name/sa/satty/package.nix b/pkgs/by-name/sa/satty/package.nix index db708a46ed014..2dfb009c5cd27 100644 --- a/pkgs/by-name/sa/satty/package.nix +++ b/pkgs/by-name/sa/satty/package.nix @@ -16,16 +16,16 @@ rustPlatform.buildRustPackage rec { pname = "satty"; - version = "0.12.1"; + version = "0.13.0"; src = fetchFromGitHub { owner = "gabm"; repo = "Satty"; rev = "v${version}"; - hash = "sha256-4upjVP7DEWD76wycmCQxl86nsJYI0+V7dSThRFJu9Ds="; + hash = "sha256-sEAAK8WeDQrRY6IEaiQwsDdKXetjuMCjhElbM6S8vsA="; }; - cargoHash = "sha256-z2hRSGAwCI6DiXP87OzyyhJYjdB/7hSxYlUsKij1WQk="; + cargoHash = "sha256-no5M/Zxu5YQjI2HdxC/fU5YIq8L6iuSAvUQ4dHkA2r4="; nativeBuildInputs = [ copyDesktopItems diff --git a/pkgs/by-name/se/seabird/package.nix b/pkgs/by-name/se/seabird/package.nix index 6aae87efa83f7..bd40f2726caa7 100644 --- a/pkgs/by-name/se/seabird/package.nix +++ b/pkgs/by-name/se/seabird/package.nix @@ -27,13 +27,13 @@ buildGo122Module rec { nativeBuildInputs = [ copyDesktopItems + gobject-introspection libxml2 pkg-config wrapGAppsHook4 ]; buildInputs = [ - gobject-introspection gtk4 gtksourceview5 libadwaita @@ -42,6 +42,8 @@ buildGo122Module rec { ldflags = [ "-s" "-w" ]; + enableParallelBuilding = true; + postPatch = '' substituteInPlace main.go --replace-fail 'version = "dev"' 'version = "${version}"' ''; diff --git a/pkgs/by-name/se/searxng/package.nix b/pkgs/by-name/se/searxng/package.nix index 7bca3ca181a79..4270088a5d293 100644 --- a/pkgs/by-name/se/searxng/package.nix +++ b/pkgs/by-name/se/searxng/package.nix @@ -1,84 +1,97 @@ -{ lib -, python3 -, fetchFromGitHub +{ + lib, + python3, + fetchFromGitHub, + nixosTests }: -python3.pkgs.toPythonModule (python3.pkgs.buildPythonApplication rec { - pname = "searxng"; - version = "0-unstable-2024-05-31"; +python3.pkgs.toPythonModule ( + python3.pkgs.buildPythonApplication rec { + pname = "searxng"; + version = "0-unstable-2024-06-19"; - src = fetchFromGitHub { - owner = "searxng"; - repo = "searxng"; - rev = "18fb701be225560b3fb1011cc533f785823f26a4"; - hash = "sha256-okE/Uxl7YqcM99kLJ4KAlMQi50x5m0bPfYp5bv62WEw="; - }; + src = fetchFromGitHub { + owner = "searxng"; + repo = "searxng"; + rev = "acf3f109b2a99a5e6f25f5f2975016a36673c6ef"; + hash = "sha256-NdFnB5JEaWo7gt+RwxKxkVtEL8uGLlc4z0ROHN+zoL4="; + }; - postPatch = '' - sed -i 's/==.*$//' requirements.txt + postPatch = '' + sed -i 's/==.*$//' requirements.txt + ''; - # can't be fetchpatched as it is essentially empty and it complains about that - # TODO: drop when updating to a version that includes https://github.com/searxng/searxng/pull/3563 - touch searx/answerers/random/__init__.py - touch searx/answerers/statistics/__init__.py - ''; + preBuild = + let + versionString = lib.concatStringsSep "." ( + builtins.tail (lib.splitString "-" (lib.removePrefix "0-" version)) + ); + commitAbbrev = builtins.substring 0 8 src.rev; + in + '' + export SEARX_DEBUG="true"; - preBuild = - let - versionString = lib.concatStringsSep "." (builtins.tail (lib.splitString "-" (lib.removePrefix "0-" version))); - commitAbbrev = builtins.substring 0 8 src.rev; - in - '' - export SEARX_DEBUG="true"; + cat > searx/version_frozen.py <<EOF + VERSION_STRING="${versionString}+${commitAbbrev}" + VERSION_TAG="${versionString}+${commitAbbrev}" + DOCKER_TAG="${versionString}-${commitAbbrev}" + GIT_URL="https://github.com/searxng/searxng" + GIT_BRANCH="master" + EOF + ''; - cat > searx/version_frozen.py <<EOF - VERSION_STRING="${versionString}+${commitAbbrev}" - VERSION_TAG="${versionString}+${commitAbbrev}" - DOCKER_TAG="${versionString}-${commitAbbrev}" - GIT_URL="https://github.com/searxng/searxng" - GIT_BRANCH="master" - EOF - ''; + dependencies = + with python3.pkgs; + [ + babel + certifi + python-dateutil + fasttext-predict + flask + flask-babel + brotli + jinja2 + lxml + pygments + pytomlpp + pyyaml + redis + uvloop + setproctitle + httpx + httpx-socks + markdown-it-py + ] + ++ httpx.optional-dependencies.http2 + ++ httpx-socks.optional-dependencies.asyncio; - propagatedBuildInputs = with python3.pkgs; [ - babel - certifi - python-dateutil - fasttext-predict - flask - flask-babel - brotli - jinja2 - lxml - pygments - pytomlpp - pyyaml - redis - uvloop - setproctitle - httpx - httpx-socks - markdown-it-py - ] ++ httpx.optional-dependencies.http2 - ++ httpx-socks.optional-dependencies.asyncio; + # tests try to connect to network + doCheck = false; - # tests try to connect to network - doCheck = false; + postInstall = '' + # Create a symlink for easier access to static data + mkdir -p $out/share + ln -s ../${python3.sitePackages}/searx/static $out/share/ - postInstall = '' - # Create a symlink for easier access to static data - mkdir -p $out/share - ln -s ../${python3.sitePackages}/searx/static $out/share/ + # copy config schema for the limiter + cp searx/limiter.toml $out/${python3.sitePackages}/searx/limiter.toml + ''; - # copy config schema for the limiter - cp searx/limiter.toml $out/${python3.sitePackages}/searx/limiter.toml - ''; + passthru = { + tests = { + searxng = nixosTests.searx; + }; + }; - meta = with lib; { - homepage = "https://github.com/searxng/searxng"; - description = "Fork of Searx, a privacy-respecting, hackable metasearch engine"; - license = licenses.agpl3Plus; - mainProgram = "searxng-run"; - maintainers = with maintainers; [ SuperSandro2000 _999eagle ]; - }; -}) + meta = with lib; { + homepage = "https://github.com/searxng/searxng"; + description = "Fork of Searx, a privacy-respecting, hackable metasearch engine"; + license = licenses.agpl3Plus; + mainProgram = "searxng-run"; + maintainers = with maintainers; [ + SuperSandro2000 + _999eagle + ]; + }; + } +) diff --git a/pkgs/by-name/se/serverless/package.nix b/pkgs/by-name/se/serverless/package.nix index 31745c7778c9b..c7ab60a5be592 100644 --- a/pkgs/by-name/se/serverless/package.nix +++ b/pkgs/by-name/se/serverless/package.nix @@ -28,6 +28,6 @@ buildNpmPackage rec { homepage = "https://serverless.com"; license = lib.licenses.mit; mainProgram = "serverless"; - maintainers = with lib.maintainers; [ wolfangaukang ]; + maintainers = [ ]; }; } diff --git a/pkgs/applications/misc/sfwbar/default.nix b/pkgs/by-name/sf/sfwbar/package.nix index bc96dbe2c317a..712040333536d 100644 --- a/pkgs/applications/misc/sfwbar/default.nix +++ b/pkgs/by-name/sf/sfwbar/package.nix @@ -1,28 +1,31 @@ -{ lib -, stdenv -, fetchFromGitHub -, gtk3 -, meson -, ninja -, json_c -, pkg-config -, gtk-layer-shell -, libpulseaudio -, libmpdclient -, libxkbcommon -, alsa-lib -, makeWrapper -, +{ + lib, + stdenv, + fetchFromGitHub, + gtk3, + meson, + ninja, + json_c, + pkg-config, + gtk-layer-shell, + libpulseaudio, + libmpdclient, + libxkbcommon, + alsa-lib, + makeWrapper, }: -stdenv.mkDerivation rec { +let + version = "1.0_beta14"; +in +stdenv.mkDerivation { pname = "sfwbar"; - version = "1.0_beta13"; + inherit version; src = fetchFromGitHub { owner = "LBCrion"; - repo = pname; + repo = "sfwbar"; rev = "v${version}"; - hash = "sha256-7oiuTEqdXDReKdakJX6+HRaSi1XovM+MkHFkaFZtq64="; + hash = "sha256-4brP1SXaWq/L0D87rvlrWhLU1oFPSwNNxBSzRr4jsTM="; }; buildInputs = [ @@ -47,12 +50,16 @@ stdenv.mkDerivation rec { --suffix XDG_DATA_DIRS : $out/share ''; - meta = with lib; { + meta = { homepage = "https://github.com/LBCrion/sfwbar"; description = "Flexible taskbar application for wayland compositors, designed with a stacking layout in mind"; + changelog = "https://github.com/LBCrion/sfwbar/releases/tag/v${version}"; mainProgram = "sfwbar"; - platforms = platforms.linux; - maintainers = with maintainers; [ NotAShelf ]; - license = licenses.gpl3Only; + platforms = lib.platforms.linux; + maintainers = with lib.maintainers; [ + luftmensch-luftmensch + NotAShelf + ]; + license = lib.licenses.gpl3Only; }; } diff --git a/pkgs/by-name/sm/smag/package.nix b/pkgs/by-name/sm/smag/package.nix index b56d3aa2678d0..794ee78e85910 100644 --- a/pkgs/by-name/sm/smag/package.nix +++ b/pkgs/by-name/sm/smag/package.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "smag"; - version = "0.7.0"; + version = "0.8.0"; src = fetchFromGitHub { owner = "aantn"; repo = pname; rev = "v${version}"; - hash = "sha256-PdrK4kblXju23suMe3nYFT1KEbyQu4fwP/XTb2kV1fs="; + hash = "sha256-Vyd35wYDNI4T7DdqihwpmJOAZGxjnCeWS609o3L+gHM="; }; - cargoHash = "sha256-SX6tOodmB0usM0laOt8mjIINPYbzHI4gyUhsR21Oqrw="; + cargoHash = "sha256-ujQAT36qzlfliEC7rFYiWUb3DuwkqCvpUS5Q3v+6378="; meta = with lib; { description = "Easily create graphs from cli commands and view them in the terminal"; diff --git a/pkgs/by-name/sn/snx-rs/package.nix b/pkgs/by-name/sn/snx-rs/package.nix index ff8ee2deb50e7..29468c2f669f9 100644 --- a/pkgs/by-name/sn/snx-rs/package.nix +++ b/pkgs/by-name/sn/snx-rs/package.nix @@ -28,6 +28,6 @@ rustPlatform.buildRustPackage { description = "Open source Linux client for Checkpoint VPN tunnels"; homepage = "https://github.com/ancwrd1/snx-rs"; license = lib.licenses.agpl3Plus; - maintainers = [ lib.maintainers.lheckemann ]; + maintainers = [ ]; }; } diff --git a/pkgs/by-name/so/sof-tools/package.nix b/pkgs/by-name/so/sof-tools/package.nix new file mode 100644 index 0000000000000..179210da93e3a --- /dev/null +++ b/pkgs/by-name/so/sof-tools/package.nix @@ -0,0 +1,26 @@ +{ lib, stdenv, fetchFromGitHub, cmake, alsa-lib }: + +stdenv.mkDerivation rec { + pname = "sof-tools"; + version = "2.9"; + + src = fetchFromGitHub { + owner = "thesofproject"; + repo = "sof"; + rev = "v${version}"; + hash = "sha256-AOBJtC40Lu1gWM8w/Vs/nc540bisg58m+qH16F1e6jY="; + }; + + nativeBuildInputs = [ cmake ]; + buildInputs = [ alsa-lib ]; + sourceRoot = "${src.name}/tools"; + + meta = with lib; { + description = "Tools to develop, test and debug SoF (Sund Open Firmware)"; + homepage = "https://thesofproject.github.io"; + license = licenses.bsd3; + platforms = platforms.unix; + maintainers = [ maintainers.johnazoidberg ]; + mainProgram = "sof-ctl"; + }; +} diff --git a/pkgs/by-name/sp/spacedrive/package.nix b/pkgs/by-name/sp/spacedrive/package.nix index 1466c3deaba51..dc738be669d96 100644 --- a/pkgs/by-name/sp/spacedrive/package.nix +++ b/pkgs/by-name/sp/spacedrive/package.nix @@ -1,73 +1,136 @@ -{ lib -, pkgs -, stdenv -, fetchurl -, appimageTools -, undmg -, nix-update-script +{ + lib, + stdenv, + fetchurl, + undmg, + nix-update-script, + #linux required + autoPatchelfHook, + dpkg, + gdk-pixbuf, + glib, + gst_all_1, + libsoup, + webkitgtk_4_1, + xdotool, }: let pname = "spacedrive"; - version = "0.2.14"; - - src = fetchurl { - aarch64-darwin = { - url = "https://github.com/spacedriveapp/spacedrive/releases/download/${version}/Spacedrive-darwin-aarch64.dmg"; - hash = "sha256-G0Ey7ewZeXegiqkAXFmS0MdaYllTphp7Buqs5/4/mWY="; - }; - x86_64-darwin = { - url = "https://github.com/spacedriveapp/spacedrive/releases/download/${version}/Spacedrive-darwin-x86_64.dmg"; - hash = "sha256-ypUDb94RlGqJfkf4htWKZ0UrGZ0SyCZrrAqtMuxDzDI="; - }; - x86_64-linux = { - url = "https://github.com/spacedriveapp/spacedrive/releases/download/${version}/Spacedrive-linux-x86_64.AppImage"; - hash = "sha256-DFJ1/uJW0BwEtJZxGpnvGC7U8YmsJTUbcuWEOAP2Bno="; - }; - }.${stdenv.system} or (throw "${pname}-${version}: ${stdenv.system} is unsupported."); + version = "0.3.1"; + + src = + fetchurl + { + aarch64-darwin = { + url = "https://github.com/spacedriveapp/spacedrive/releases/download/${version}/Spacedrive-darwin-aarch64.dmg"; + hash = "sha256-9E7h03zJtH8b6khDcbBsB46iVWwl48s+GJuBMOmEre4="; + }; + x86_64-darwin = { + url = "https://github.com/spacedriveapp/spacedrive/releases/download/${version}/Spacedrive-darwin-x86_64.dmg"; + hash = "sha256-h+B7tc6jXJUFNEMhG6ZNch+grtgUeAzfa37BDoZ6M8Q="; + }; + x86_64-linux = { + url = "https://github.com/spacedriveapp/spacedrive/releases/download/${version}/Spacedrive-linux-x86_64.deb"; + hash = "sha256-E1mOODG4YzBc0TPZJmKgrt/c5hp5LwzLaYPl+J5dnkg="; + }; + } + .${stdenv.system} or (throw "${pname}-${version}: ${stdenv.system} is unsupported."); meta = { description = "Open source file manager, powered by a virtual distributed filesystem"; homepage = "https://www.spacedrive.com"; changelog = "https://github.com/spacedriveapp/spacedrive/releases/tag/${version}"; - platforms = [ "aarch64-darwin" "x86_64-darwin" "x86_64-linux" ]; + platforms = [ + "aarch64-darwin" + "x86_64-darwin" + "x86_64-linux" + ]; license = lib.licenses.agpl3Plus; sourceProvenance = with lib.sourceTypes; [ binaryNativeCode ]; - maintainers = with lib.maintainers; [ DataHearth heisfer mikaelfangel stepbrobd ]; + maintainers = with lib.maintainers; [ + DataHearth + heisfer + mikaelfangel + stepbrobd + ]; mainProgram = "spacedrive"; }; passthru.updateScript = nix-update-script { }; in -if stdenv.isDarwin then stdenv.mkDerivation -{ - inherit pname version src meta passthru; - - sourceRoot = "Spacedrive.app"; - - nativeBuildInputs = [ undmg ]; - - installPhase = '' - mkdir -p "$out/Applications/Spacedrive.app" - cp -r . "$out/Applications/Spacedrive.app" - mkdir -p "$out/bin" - ln -s "$out/Applications/Spacedrive.app/Contents/MacOS/Spacedrive" "$out/bin/spacedrive" - ''; -} -else appimageTools.wrapType2 { - inherit pname version src meta passthru; - - extraPkgs = pkgs: [ pkgs.libthai ]; - - extraInstallCommands = - let - appimageContents = appimageTools.extractType2 { inherit pname version src; }; - in - '' - # Install .desktop files - install -Dm444 ${appimageContents}/com.spacedrive.desktop -t $out/share/applications - install -Dm444 ${appimageContents}/spacedrive.png -t $out/share/pixmaps - substituteInPlace $out/share/applications/com.spacedrive.desktop \ - --replace 'Exec=usr/bin/spacedrive' 'Exec=spacedrive' +if stdenv.isDarwin then + stdenv.mkDerivation { + inherit + pname + version + src + meta + passthru + ; + + sourceRoot = "Spacedrive.app"; + + nativeBuildInputs = [ undmg ]; + + installPhase = '' + runHook preInstall + + mkdir -p "$out/Applications/Spacedrive.app" + cp -r . "$out/Applications/Spacedrive.app" + mkdir -p "$out/bin" + ln -s "$out/Applications/Spacedrive.app/Contents/MacOS/Spacedrive" "$out/bin/spacedrive" + + runHook postInstall + ''; + } + +else + stdenv.mkDerivation { + inherit + pname + version + src + meta + passthru + ; + + nativeBuildInputs = [ + autoPatchelfHook + dpkg + ]; + + # Depends: libc6, libxdo3, libwebkit2gtk-4.1-0, libgtk-3-0 + # Recommends: gstreamer1.0-plugins-ugly + # Suggests: gstreamer1.0-plugins-bad + buildInputs = [ + xdotool + glib + libsoup + webkitgtk_4_1 + gdk-pixbuf + gst_all_1.gst-plugins-ugly + gst_all_1.gst-plugins-bad + gst_all_1.gst-plugins-base + gst_all_1.gstreamer + ]; + + unpackPhase = '' + runHook preUnpack + + dpkg-deb -x $src . + + runHook postUnpack + ''; + + installPhase = '' + runHook preInstall + + mkdir -p $out/bin + cp -r usr/share $out/ + cp -r usr/lib $out/ + cp -r usr/bin $out/ + + runHook postInstall ''; -} + } diff --git a/pkgs/by-name/sv/svelte-language-server/package-lock.json b/pkgs/by-name/sv/svelte-language-server/package-lock.json index da3bab8625e55..9aaf276067218 100644 --- a/pkgs/by-name/sv/svelte-language-server/package-lock.json +++ b/pkgs/by-name/sv/svelte-language-server/package-lock.json @@ -1,12 +1,12 @@ { "name": "svelte-language-server", - "version": "0.16.10", + "version": "0.16.11", "lockfileVersion": 3, "requires": true, "packages": { "": { "name": "svelte-language-server", - "version": "0.16.10", + "version": "0.16.11", "license": "MIT", "dependencies": { "@jridgewell/trace-mapping": "^0.3.17", @@ -211,9 +211,9 @@ "dev": true }, "node_modules/@types/lodash": { - "version": "4.17.4", - "resolved": "https://registry.npmjs.org/@types/lodash/-/lodash-4.17.4.tgz", - "integrity": "sha512-wYCP26ZLxaT3R39kiN2+HcJ4kTd3U1waI/cY7ivWYqFP6pW3ZNpvi6Wd6PHZx7T/t8z0vlkXMg3QYLa7DZ/IJQ==", + "version": "4.17.5", + "resolved": "https://registry.npmjs.org/@types/lodash/-/lodash-4.17.5.tgz", + "integrity": "sha512-MBIOHVZqVqgfro1euRDWX7OO0fBVUUMrN6Pwm8LQsz8cWhEpihlvR70ENj3f40j58TNxZaWv2ndSkInykNBBJw==", "dev": true }, "node_modules/@types/mocha": { @@ -223,9 +223,9 @@ "dev": true }, "node_modules/@types/node": { - "version": "16.18.98", - "resolved": "https://registry.npmjs.org/@types/node/-/node-16.18.98.tgz", - "integrity": "sha512-fpiC20NvLpTLAzo3oVBKIqBGR6Fx/8oAK/SSf7G+fydnXMY1x4x9RZ6sBXhqKlCU21g2QapUsbLlhv3+a7wS+Q==", + "version": "16.18.101", + "resolved": "https://registry.npmjs.org/@types/node/-/node-16.18.101.tgz", + "integrity": "sha512-AAsx9Rgz2IzG8KJ6tXd6ndNkVcu+GYB6U/SnFAaokSPNx2N7dcIIfnighYUNumvj6YS2q39Dejz5tT0NCV7CWA==", "dev": true }, "node_modules/@types/prettier": { @@ -275,9 +275,9 @@ "integrity": "sha512-KYSIHVmslkaCDyw013pphY+d7x1qV8IZupYfeIfzNA+nsaWHbn5uPuQRvdRFsa9zFzGeudPuoGoZ1Op4jrJXIQ==" }, "node_modules/acorn": { - "version": "8.11.3", - "resolved": "https://registry.npmjs.org/acorn/-/acorn-8.11.3.tgz", - "integrity": "sha512-Y9rRfJG5jcKOE0CLisYbojUjIrIEE7AGMzA/Sm4BslANhbS+cDMpgBdcPT91oJ7OuJ9hYJBx59RjbhxVnrF8Xg==", + "version": "8.12.0", + "resolved": "https://registry.npmjs.org/acorn/-/acorn-8.12.0.tgz", + "integrity": "sha512-RTvkC4w+KNXrM39/lWCUaG0IbRkWdCv7W/IOW9oU6SawyxulvkQy5HQPVTKxEjczcUvapcrw3cFx/60VN/NRNw==", "dev": true, "bin": { "acorn": "bin/acorn" @@ -287,10 +287,13 @@ } }, "node_modules/acorn-walk": { - "version": "8.3.2", - "resolved": "https://registry.npmjs.org/acorn-walk/-/acorn-walk-8.3.2.tgz", - "integrity": "sha512-cjkyv4OtNCIeqhHrfS81QWXoCBPExR/J62oyEqepVw8WaQeSqpW2uhuLPh1m9eWhDuOo/jUXVTlifvesOWp/4A==", + "version": "8.3.3", + "resolved": "https://registry.npmjs.org/acorn-walk/-/acorn-walk-8.3.3.tgz", + "integrity": "sha512-MxXdReSRhGO7VlFe1bRG/oI7/mdLV9B9JJT0N8vZOhF7gFRR5l3M8W9G8JxmKV+JC5mGqJ0QvqfSOLsCPa4nUw==", "dev": true, + "dependencies": { + "acorn": "^8.11.0" + }, "engines": { "node": ">=0.4.0" } @@ -395,11 +398,11 @@ "dev": true }, "node_modules/buffer-crc32": { - "version": "0.2.13", - "resolved": "https://registry.npmjs.org/buffer-crc32/-/buffer-crc32-0.2.13.tgz", - "integrity": "sha512-VO9Ht/+p3SN7SKWqcrgEzjGbRSJYTx+Q1pTQC0wrWqHx0vpJraQ6GtHx8tvcg1rlK1byhU5gccxgOgj7B0TDkQ==", + "version": "1.0.0", + "resolved": "https://registry.npmjs.org/buffer-crc32/-/buffer-crc32-1.0.0.tgz", + "integrity": "sha512-Db1SbgBS/fg/392AblrMJk97KggmvYhr4pB5ZIMTWtaivCPMWLkmb7m21cJvpvgK+J3nsU2CmmixNBZx4vFj/w==", "engines": { - "node": "*" + "node": ">=8.0.0" } }, "node_modules/camelcase": { @@ -1282,9 +1285,9 @@ } }, "node_modules/prettier-plugin-svelte": { - "version": "3.2.3", - "resolved": "https://registry.npmjs.org/prettier-plugin-svelte/-/prettier-plugin-svelte-3.2.3.tgz", - "integrity": "sha512-wJq8RunyFlWco6U0WJV5wNCM7zpBFakS76UBSbmzMGpncpK98NZABaE+s7n8/APDCEVNHXC5Mpq+MLebQtsRlg==", + "version": "3.2.5", + "resolved": "https://registry.npmjs.org/prettier-plugin-svelte/-/prettier-plugin-svelte-3.2.5.tgz", + "integrity": "sha512-vP/M/Goc8z4iVIvrwXwbrYVjJgA0Hf8PO1G4LBh/ocSt6vUP6sLvyu9F3ABEGr+dbKyxZjEKLkeFsWy/yYl0HQ==", "peerDependencies": { "prettier": "^3.0.0", "svelte": "^3.2.0 || ^4.0.0-next.0 || ^5.0.0-next.0" @@ -1485,12 +1488,12 @@ } }, "node_modules/sorcery": { - "version": "0.11.0", - "resolved": "https://registry.npmjs.org/sorcery/-/sorcery-0.11.0.tgz", - "integrity": "sha512-J69LQ22xrQB1cIFJhPfgtLuI6BpWRiWu1Y3vSsIwK/eAScqJxd/+CJlUuHQRdX2C9NGFamq+KqNywGgaThwfHw==", + "version": "0.11.1", + "resolved": "https://registry.npmjs.org/sorcery/-/sorcery-0.11.1.tgz", + "integrity": "sha512-o7npfeJE6wi6J9l0/5LKshFzZ2rMatRiCDwYeDQaOzqdzRJwALhX7mk/A/ecg6wjMu7wdZbmXfD2S/vpOg0bdQ==", "dependencies": { "@jridgewell/sourcemap-codec": "^1.4.14", - "buffer-crc32": "^0.2.5", + "buffer-crc32": "^1.0.0", "minimist": "^1.2.0", "sander": "^0.5.0" }, @@ -1632,9 +1635,9 @@ } }, "node_modules/svelte2tsx": { - "version": "0.7.9", - "resolved": "https://registry.npmjs.org/svelte2tsx/-/svelte2tsx-0.7.9.tgz", - "integrity": "sha512-Rm+0LAwg9wT4H2IsR8EaM9EWErTzi9LmuZKxkH5b1ua94XjQmwHstBP4VabLgA9AE6XmwBg+xK7Cjzwfm6ustQ==", + "version": "0.7.10", + "resolved": "https://registry.npmjs.org/svelte2tsx/-/svelte2tsx-0.7.10.tgz", + "integrity": "sha512-POOXaTncPGjwXMj6NVSRvdNj8KFqqLabFtXsQal3WyPy4X5raGsiDST2+ELhceKwfHk79/hR3qGUeU7KxYo4vQ==", "dependencies": { "dedent-js": "^1.0.1", "pascal-case": "^3.1.1" @@ -1722,9 +1725,9 @@ } }, "node_modules/typescript": { - "version": "5.4.5", - "resolved": "https://registry.npmjs.org/typescript/-/typescript-5.4.5.tgz", - "integrity": "sha512-vcI4UpRgg81oIRUFwR0WSIHKt11nJ7SAVlYNIu+QpqeyXP+gpQJy/Z4+F0aGxSE4MqwjyXvW/TzgkLAx2AGHwQ==", + "version": "5.5.2", + "resolved": "https://registry.npmjs.org/typescript/-/typescript-5.5.2.tgz", + "integrity": "sha512-NcRtPEOsPFFWjobJEtfihkLCZCXZt/os3zf8nTxjVH3RvTSxjrCamJpbExGvYOF+tFHc3pA65qpdwPbzjohhew==", "bin": { "tsc": "bin/tsc", "tsserver": "bin/tsserver" diff --git a/pkgs/by-name/sv/svelte-language-server/package.nix b/pkgs/by-name/sv/svelte-language-server/package.nix index 7fdab27f323ee..008abf6bc6f2e 100644 --- a/pkgs/by-name/sv/svelte-language-server/package.nix +++ b/pkgs/by-name/sv/svelte-language-server/package.nix @@ -3,17 +3,17 @@ , fetchurl }: let - version = "0.16.10"; + version = "0.16.11"; in buildNpmPackage { pname = "svelte-language-server"; inherit version; src = fetchurl { url = "https://registry.npmjs.org/svelte-language-server/-/svelte-language-server-${version}.tgz"; - hash = "sha256-Int5mc147BUqpOGT2T3oNRbLNjioEaEifOH3wF1vJL4="; + hash = "sha256-xTBdiOS6XwJN5t6L49COWeoyMUBRzlxbAND5S1e9/Xw="; }; - npmDepsHash = "sha256-/JjMrbDyoHUvGJxqmkxjxCkWURJa8sXUZryQRGTdRMY="; + npmDepsHash = "sha256-RR67TdgQHgF7RdrHjebGzIVGkeLABwXQgikd+Bc8lSE="; postPatch = '' ln -s ${./package-lock.json} package-lock.json diff --git a/pkgs/by-name/sx/sxcs/package.nix b/pkgs/by-name/sx/sxcs/package.nix new file mode 100644 index 0000000000000..637efb609e657 --- /dev/null +++ b/pkgs/by-name/sx/sxcs/package.nix @@ -0,0 +1,48 @@ +{ + lib, + stdenv, + fetchFromGitea, + xorg, + installShellFiles +}: + +stdenv.mkDerivation (finalAttrs: { + name = "sxcs"; + version = "1.1.0"; + + src = fetchFromGitea { + domain = "codeberg.org"; + owner = "NRK"; + repo = "sxcs"; + rev = "refs/tags/v${finalAttrs.version}"; + hash = "sha256-rYmbbdZjeLCvGvNocI3+KVU2KBkYvRisayTyScTRay8="; + }; + + buildInputs = [ xorg.libX11 xorg.libXcursor ]; + nativeBuildInputs = [ installShellFiles ]; + + buildPhase = '' + runHook preBuild + ${stdenv.cc.targetPrefix}cc -o sxcs sxcs.c -O3 -s -l X11 -l Xcursor + runHook postBuild + ''; + + outputs = [ "out" "man" ]; + + installPhase = '' + runHook preInstall + + install -Dm755 sxcs -t $out/bin + installManPage sxcs.1 + + runHook postInstall + ''; + + meta = { + description = "Minimal X11 Color Picker and Magnifier"; + homepage = "https://codeberg.org/NRK/sxcs"; + license = lib.licenses.gpl3Plus; + maintainers = with lib.maintainers; [ sigmanificient ]; + platforms = lib.platforms.linux; + }; +}) diff --git a/pkgs/by-name/sy/syndication-domination/package.nix b/pkgs/by-name/sy/syndication-domination/package.nix new file mode 100644 index 0000000000000..10e325d856425 --- /dev/null +++ b/pkgs/by-name/sy/syndication-domination/package.nix @@ -0,0 +1,55 @@ +{ + lib, + stdenv, + fetchFromGitLab, + meson, + ninja, + pkg-config, + pugixml, + fmt, + html-tidy, + enablePython? false, + python3Packages, +}: + +stdenv.mkDerivation { + pname = "syndication-domination"; + # author extraction feature needed by gnome-feeds + version = "1.0-unstable-2023-03-25"; + + src = fetchFromGitLab { + owner = "gabmus"; + repo = "syndication-domination"; + rev = "75920321062d682437f3fb0319dad227d8b18f6c"; + hash = "sha256-fOlE9CsNcmGkVBXaqYHxLDWB8voeRp46+dZYIJIwg7o="; + }; + + nativeBuildInputs = [ + meson + ninja + pkg-config + ]; + + buildInputs = [ + pugixml + fmt + html-tidy + ] ++ lib.optionals enablePython [ + python3Packages.python + python3Packages.pybind11 + ]; + + mesonFlags = [ + (lib.mesonBool "TO_JSON_BINARY" true) + (lib.mesonBool "PYTHON_BINDINGS" enablePython) + ]; + + meta = { + description = "RSS/Atom parser written in C++ with Python binding"; + homepage = "https://gitlab.com/gabmus/syndication-domination"; + license = lib.licenses.agpl3Only; + mainProgram = "SyndicationDomination"; + maintainers = with lib.maintainers; [ aleksana ]; + platforms = lib.platforms.all; + }; +} diff --git a/pkgs/by-name/sy/sysmenu/001-no-runtime-config.patch b/pkgs/by-name/sy/sysmenu/001-no-runtime-config.patch new file mode 100644 index 0000000000000..e310f21b3dc15 --- /dev/null +++ b/pkgs/by-name/sy/sysmenu/001-no-runtime-config.patch @@ -0,0 +1,13 @@ +diff --git a/src/config.hpp b/src/config.hpp +index 6e7439b..ae01462 100644 +--- a/src/config.hpp ++++ b/src/config.hpp +@@ -4,8 +4,6 @@ + Runtime configuration can be disabled by deleting #define RUNTIME_CONFIG + */ + +-#define RUNTIME_CONFIG +- + // Current Default + inline bool starthidden = false; // false + inline bool searchbar = true; // true diff --git a/pkgs/by-name/sy/sysmenu/002-cflags-fix.patch b/pkgs/by-name/sy/sysmenu/002-cflags-fix.patch new file mode 100644 index 0000000000000..d089857ff6694 --- /dev/null +++ b/pkgs/by-name/sy/sysmenu/002-cflags-fix.patch @@ -0,0 +1,13 @@ +diff --git a/Makefile b/Makefile +index f0b6baf..71033a5 100644 +--- a/Makefile ++++ b/Makefile +@@ -4,7 +4,7 @@ SRCS += $(wildcard src/*.cpp) + OBJS = $(SRCS:.cpp=.o) + DESTDIR = $(HOME)/.local + +-CXXFLAGS = -march=native -mtune=native -Os -s -Wall -flto=auto -fno-exceptions ++CXXFLAGS = -Os -s -Wall -flto=auto -fno-exceptions + CXXFLAGS += $(shell pkg-config --cflags $(PKGS)) + LDFLAGS += $(shell pkg-config --libs $(PKGS)) -Wl,--gc-sections + diff --git a/pkgs/by-name/sy/sysmenu/package.nix b/pkgs/by-name/sy/sysmenu/package.nix new file mode 100644 index 0000000000000..1c7f86aea499f --- /dev/null +++ b/pkgs/by-name/sy/sysmenu/package.nix @@ -0,0 +1,56 @@ +{ + stdenv, + lib, + fetchFromGitHub, + pkg-config, + git, + gtkmm4, + gtk4-layer-shell, + wrapGAppsHook4, + unstableGitUpdater, +}: + +stdenv.mkDerivation { + pname = "sysmenu"; + version = "unstable-2024-06-13"; + + src = fetchFromGitHub { + owner = "System64fumo"; + repo = "sysmenu"; + rev = "0b891e5d27f286b867d4a0984ee284a3456de851"; + hash = "sha256-zI6dmS+ZqcGrG/joWouqrMNQfTRflP677kYJLJEWTBc="; + }; + + patches = [ + ./001-no-runtime-config.patch + ./002-cflags-fix.patch + ]; + + nativeBuildInputs = [ + pkg-config + git + wrapGAppsHook4 + ]; + + buildInputs = [ + gtkmm4 + gtk4-layer-shell + ]; + + installPhase = '' + runHook preInstall + install -Dm755 sysmenu $out/bin/sysmenu + runHook postInstall + ''; + + passthru.updateScript = unstableGitUpdater { }; + + meta = { + description = "Simple program launcher using GTK4"; + homepage = "https://github.com/System64fumo/sysmenu"; + license = lib.licenses.wtfpl; + mainProgram = "sysmenu"; + maintainers = with lib.maintainers; [ matteopacini ]; + platforms = lib.platforms.linux; + }; +} diff --git a/pkgs/by-name/ta/tabiew/package.nix b/pkgs/by-name/ta/tabiew/package.nix index 3c562a146666a..92560fb9247a4 100644 --- a/pkgs/by-name/ta/tabiew/package.nix +++ b/pkgs/by-name/ta/tabiew/package.nix @@ -1,17 +1,20 @@ -{ lib, fetchFromGitHub, rustPlatform, stdenv, installShellFiles }: - +{ lib +, fetchFromGitHub +, rustPlatform +, installShellFiles +}: rustPlatform.buildRustPackage rec { pname = "tabiew"; - version = "0.3.4"; + version = "0.3.5"; src = fetchFromGitHub { owner = "shshemi"; repo = "tabiew"; rev = "v${version}"; - hash = "sha256-sJQlvJxVXHgkE4RUtlM3BNL1rZKvQa7C5wlPHjFSuus="; + hash = "sha256-ObS+8901Uw9mIzMK14D0UgCWJFRNaQ0tOIq5merHYIo="; }; - cargoHash = "sha256-QpeCGeId6pPYSGQvcI06zFC013RLcv7ryZlEn3F9dAI="; + cargoHash = "sha256-vOdjHBR/FZjYkLMvPvBZ/xTPKXgchv92BQSLLodymgY="; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/by-name/ta/tailscale-nginx-auth/package.nix b/pkgs/by-name/ta/tailscale-nginx-auth/package.nix index f16f01b2b92e3..a68167b4c51ee 100644 --- a/pkgs/by-name/ta/tailscale-nginx-auth/package.nix +++ b/pkgs/by-name/ta/tailscale-nginx-auth/package.nix @@ -1,7 +1,7 @@ { lib, stdenv, buildGoModule, fetchFromGitHub }: let - version = "1.68.0"; + version = "1.68.1"; in buildGoModule { pname = "tailscale-nginx-auth"; @@ -11,7 +11,7 @@ buildGoModule { owner = "tailscale"; repo = "tailscale"; rev = "v${version}"; - hash = "sha256-GTl5RCwIoDuzbaigy0/++xaPPEMLRDbBi/z82xCDOZY="; + hash = "sha256-ZAzro69F7ovfdqzRss/U7puh1T37bkEtUXabCYc5LwU="; }; vendorHash = "sha256-SUjoeOFYz6zbEgv/vND7kEXbuWlZDrUKF2Dmqsf/KVw="; diff --git a/pkgs/by-name/tg/tg-archive/package.nix b/pkgs/by-name/tg/tg-archive/package.nix new file mode 100644 index 0000000000000..7fd336ecedece --- /dev/null +++ b/pkgs/by-name/tg/tg-archive/package.nix @@ -0,0 +1,50 @@ +{ lib +, python3 +, fetchFromGitHub +}: + +let + pname = "tg-archive"; + version = "1.1.3"; + +in python3.pkgs.buildPythonApplication { + inherit pname version; + + src = fetchFromGitHub { + owner = "knadh"; + repo = "tg-archive"; + rev = "refs/tags/v${version}"; + hash = "sha256-mcobB/z+e4LzEbqELWlUzhbdV5RIM2iImeg9JdVQQZc="; + }; + + pyproject = true; + pythonRelaxDeps = true; + + nativeBuildInputs = with python3.pkgs; [ + pythonRelaxDepsHook + ]; + + propagatedBuildInputs = with python3.pkgs; [ + setuptools + telethon + jinja2 + pyyaml + cryptg + pillow + feedgen + python-magic + pytz + ]; + + pythonImportsCheck = [ + "tgarchive" + ]; + + meta = { + description = "A tool for exporting Telegram group chats into static websites like mailing list archives"; + homepage = "https://github.com/knadh/tg-archive"; + license = lib.licenses.mit; + maintainers = with lib.maintainers; [ pacien ]; + mainProgram = "tg-archive"; + }; +} diff --git a/pkgs/by-name/to/toml-sort/package.nix b/pkgs/by-name/to/toml-sort/package.nix new file mode 100644 index 0000000000000..3225530454557 --- /dev/null +++ b/pkgs/by-name/to/toml-sort/package.nix @@ -0,0 +1,39 @@ +{ + lib, + python3Packages, + fetchFromGitHub, +}: +let + version = "0.23.1"; +in +python3Packages.buildPythonApplication { + pname = "toml-sort"; + inherit version; + pyproject = true; + + src = fetchFromGitHub { + owner = "pappasam"; + repo = "toml-sort"; + rev = "refs/tags/v${version}"; + hash = "sha256-7V2WBZYAdsA4Tiy9/2UPOcThSNE3ZXM713j57KDCegk="; + }; + + build-system = [ python3Packages.poetry-core ]; + + dependencies = [ python3Packages.tomlkit ]; + + nativeCheckInputs = [ python3Packages.pytestCheckHook ]; + + postPatch = '' + substituteInPlace "tests/test_cli.py" \ + --replace-fail "toml-sort" "$out/bin/toml-sort" + ''; + + meta = { + mainProgram = "toml-sort"; + homepage = "https://github.com/pappasam/toml-sort"; + description = "Command line utility to sort and format your toml files"; + license = lib.licenses.mit; + maintainers = with lib.maintainers; [ isabelroses ]; + }; +} diff --git a/pkgs/by-name/tp/tparse/package.nix b/pkgs/by-name/tp/tparse/package.nix index 981f536a16c63..cdef5f385800b 100644 --- a/pkgs/by-name/tp/tparse/package.nix +++ b/pkgs/by-name/tp/tparse/package.nix @@ -5,7 +5,7 @@ }: let pname = "tparse"; - version = "0.13.3"; + version = "0.14.0"; in buildGoModule { inherit pname version; @@ -14,7 +14,7 @@ buildGoModule { owner = "mfridman"; repo = pname; rev = "v${version}"; - hash = "sha256-MTaxEWRNAXem/DIirrd53YEHA/A5S4wNX4osuMV3gtc="; + hash = "sha256-siw9GihPo6f+OWKvSx0kqC919BuL/YoUI2dUBwTF19U="; }; vendorHash = "sha256-j+1B2zWONjFEGoyesX0EW964kD33Jy3O1aB1WEwlESA="; diff --git a/pkgs/by-name/tr/trealla/package.nix b/pkgs/by-name/tr/trealla/package.nix index 7183280a01b07..5de74f5dbaef8 100644 --- a/pkgs/by-name/tr/trealla/package.nix +++ b/pkgs/by-name/tr/trealla/package.nix @@ -23,13 +23,13 @@ assert lib.elem lineEditingLibrary [ ]; stdenv.mkDerivation (finalAttrs: { pname = "trealla"; - version = "2.52.18"; + version = "2.52.40"; src = fetchFromGitHub { owner = "trealla-prolog"; repo = "trealla"; rev = "v${finalAttrs.version}"; - hash = "sha256-ai1z/Y3KuQUnRhWduuZfnPdz+vc1VS24Wih/CFnuCtk="; + hash = "sha256-jH1UNxlvnmM3Uv0y6MSh0fWcK4QRyJY+LRGoBb3G72U="; }; postPatch = '' diff --git a/pkgs/by-name/ty/typstyle/package.nix b/pkgs/by-name/ty/typstyle/package.nix index c6640cc6dd626..247d6180b0d0b 100644 --- a/pkgs/by-name/ty/typstyle/package.nix +++ b/pkgs/by-name/ty/typstyle/package.nix @@ -13,16 +13,16 @@ rustPlatform.buildRustPackage rec { pname = "typstyle"; - version = "0.11.26"; + version = "0.11.27"; src = fetchFromGitHub { owner = "Enter-tainer"; repo = "typstyle"; rev = "refs/tags/v${version}"; - hash = "sha256-zuMsYSiGHJkvI1y+vH77FHzCZFPkYqVoeve2kXwKVDI="; + hash = "sha256-7c2WbAEDdCmh92MXBks0AjYEEKfVFVIgU+U2x5K2jLQ="; }; - cargoHash = "sha256-PVve8zJvMQuMw4k2fEnjA2viv+f3dNgQ6xmPjbx7EgY="; + cargoHash = "sha256-EkMa5mudKaiGtMN2jhQ0PWZlpkpnYZUPXLAJng9+Kes="; nativeBuildInputs = [ pkg-config diff --git a/pkgs/by-name/uc/uclibc-ng/package.nix b/pkgs/by-name/uc/uclibc-ng/package.nix index aee6f6f015f18..b4464ef3ba657 100644 --- a/pkgs/by-name/uc/uclibc-ng/package.nix +++ b/pkgs/by-name/uc/uclibc-ng/package.nix @@ -59,11 +59,11 @@ let in stdenv.mkDerivation (finalAttrs: { pname = "uclibc-ng"; - version = "1.0.48"; + version = "1.0.49"; src = fetchurl { url = "https://downloads.uclibc-ng.org/releases/${finalAttrs.version}/uClibc-ng-${finalAttrs.version}.tar.xz"; - hash = "sha256-O/X8bMXLxFS2xHhCR1XG9x58FVeKLJZvAmBqpcVZbiE="; + hash = "sha256-NA+dXdEVnGnDOAZU455WfLswSvzT+d+i6YM/D6E/W74="; }; # 'ftw' needed to build acl, a coreutils dependency diff --git a/pkgs/by-name/uv/uv/Cargo.lock b/pkgs/by-name/uv/uv/Cargo.lock index 6ef076f1e8124..174a1d9d682cd 100644 --- a/pkgs/by-name/uv/uv/Cargo.lock +++ b/pkgs/by-name/uv/uv/Cargo.lock @@ -313,9 +313,9 @@ dependencies = [ [[package]] name = "axoupdater" -version = "0.6.5" +version = "0.6.6" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "669a5ea910fb9b97e3df709c7d0f626fc9e5e9cb83c00bd3a1b4c54835ed8b66" +checksum = "8cc5997cf9d00fa790ba6f19688d93b89760bd641d1c2482bcfbc2bf56988576" dependencies = [ "axoasset", "axoprocess", @@ -683,9 +683,9 @@ dependencies = [ [[package]] name = "clap" -version = "4.5.6" +version = "4.5.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a9689a29b593160de5bc4aacab7b5d54fb52231de70122626c178e6a368994c7" +checksum = "5db83dced34638ad474f39f250d7fea9598bdd239eaced1bdf45d597da0f433f" dependencies = [ "clap_builder", "clap_derive", @@ -693,9 +693,9 @@ dependencies = [ [[package]] name = "clap_builder" -version = "4.5.6" +version = "4.5.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2e5387378c84f6faa26890ebf9f0a92989f8873d4d380467bcd0d8d8620424df" +checksum = "f7e204572485eb3fbf28f871612191521df159bc3e15a9f5064c66dba3a8c05f" dependencies = [ "anstream", "anstyle", @@ -827,9 +827,9 @@ dependencies = [ [[package]] name = "configparser" -version = "3.0.4" +version = "3.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4ec6d3da8e550377a85339063af6e3735f4b1d9392108da4e083a1b3b9820288" +checksum = "e57e3272f0190c3f1584272d613719ba5fc7df7f4942fe542e63d949cf3a649b" [[package]] name = "console" @@ -1618,12 +1618,12 @@ dependencies = [ [[package]] name = "http-body-util" -version = "0.1.1" +version = "0.1.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0475f8b2ac86659c21b64320d5d653f9efe42acd2a4e560073ec61a155a34f1d" +checksum = "793429d76616a256bcb62c2a2ec2bed781c8307e797e2598c50010f2bee2544f" dependencies = [ "bytes", - "futures-core", + "futures-util", "http", "http-body", "pin-project-lite", @@ -1670,19 +1670,21 @@ dependencies = [ [[package]] name = "hyper-rustls" -version = "0.26.0" +version = "0.27.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a0bea761b46ae2b24eb4aef630d8d1c398157b6fc29e6350ecf090a0b70c952c" +checksum = "5ee4be2c948921a1a5320b629c4193916ed787a7f7f293fd3f7f5a6c9de74155" dependencies = [ "futures-util", "http", "hyper", "hyper-util", "rustls", + "rustls-native-certs", "rustls-pki-types", "tokio", "tokio-rustls", "tower-service", + "webpki-roots", ] [[package]] @@ -2710,7 +2712,7 @@ dependencies = [ "indoc", "libc", "memoffset 0.9.1", - "parking_lot 0.12.3", + "parking_lot 0.11.2", "portable-atomic", "pyo3-build-config", "pyo3-ffi", @@ -2798,6 +2800,53 @@ dependencies = [ ] [[package]] +name = "quinn" +version = "0.11.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "e4ceeeeabace7857413798eb1ffa1e9c905a9946a57d81fb69b4b71c4d8eb3ad" +dependencies = [ + "bytes", + "pin-project-lite", + "quinn-proto", + "quinn-udp", + "rustc-hash", + "rustls", + "thiserror", + "tokio", + "tracing", +] + +[[package]] +name = "quinn-proto" +version = "0.11.3" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "ddf517c03a109db8100448a4be38d498df8a210a99fe0e1b9eaf39e78c640efe" +dependencies = [ + "bytes", + "rand", + "ring", + "rustc-hash", + "rustls", + "slab", + "thiserror", + "tinyvec", + "tracing", +] + +[[package]] +name = "quinn-udp" +version = "0.5.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "9096629c45860fc7fb143e125eb826b5e721e10be3263160c7d60ca832cf8c46" +dependencies = [ + "libc", + "once_cell", + "socket2", + "tracing", + "windows-sys 0.52.0", +] + +[[package]] name = "quote" version = "1.0.36" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -2923,13 +2972,13 @@ dependencies = [ [[package]] name = "reflink-copy" -version = "0.1.17" +version = "0.1.18" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7c3138c30c59ed9b8572f82bed97ea591ecd7e45012566046cc39e72679cff22" +checksum = "6d731e7e3ebfcf422d96b8473e507d5b64790900dd5464772d38d1da9da24d3a" dependencies = [ "cfg-if", "rustix", - "windows 0.56.0", + "windows 0.57.0", ] [[package]] @@ -3017,9 +3066,9 @@ dependencies = [ [[package]] name = "reqwest" -version = "0.12.4" +version = "0.12.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "566cafdd92868e0939d3fb961bd0dc25fcfaaed179291093b3d43e6b3150ea10" +checksum = "c7d6d2a27d57148378eb5e111173f4276ad26340ecc5c49a4a2152167a2d6a37" dependencies = [ "async-compression", "base64 0.22.1", @@ -3040,6 +3089,7 @@ dependencies = [ "once_cell", "percent-encoding", "pin-project-lite", + "quinn", "rustls", "rustls-native-certs", "rustls-pemfile", @@ -3267,11 +3317,11 @@ dependencies = [ [[package]] name = "rustls" -version = "0.22.4" +version = "0.23.10" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "bf4ef73721ac7bcd79b2b315da7779d8fc09718c6b3d2d1b2d94850eb8c18432" +checksum = "05cff451f60db80f490f3c182b77c35260baace73209e9cdbbe526bfe3a4d402" dependencies = [ - "log", + "once_cell", "ring", "rustls-pki-types", "rustls-webpki", @@ -3695,9 +3745,9 @@ dependencies = [ [[package]] name = "sync_wrapper" -version = "0.1.2" +version = "1.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2047c6ded9c721764247e62cd3b03c09ffc529b2ba5b10ec482ae507a4a70160" +checksum = "a7065abeca94b6a8a577f9bd45aa0867a2238b74e8eb67cf10d492bc39351394" [[package]] name = "sys-info" @@ -3976,9 +4026,9 @@ dependencies = [ [[package]] name = "tokio-rustls" -version = "0.25.0" +version = "0.26.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "775e0c0f0adb3a2f22a00c4745d728b479985fc15ee7ca6a2608388c5569860f" +checksum = "0c7bc40d0e5a97695bb96e27995cd3a08538541b0a846f65bba7a359f36700d4" dependencies = [ "rustls", "rustls-pki-types", @@ -4368,7 +4418,7 @@ checksum = "a183cf7feeba97b4dd1c0d46788634f6221d87fa961b305bed08c851829efcc0" [[package]] name = "uv" -version = "0.2.11" +version = "0.2.13" dependencies = [ "anstream", "anyhow", @@ -4384,6 +4434,7 @@ dependencies = [ "filetime", "flate2", "fs-err", + "futures", "ignore", "indicatif", "indoc", @@ -4427,11 +4478,11 @@ dependencies = [ "uv-normalize", "uv-requirements", "uv-resolver", + "uv-settings", "uv-toolchain", "uv-types", "uv-virtualenv", "uv-warnings", - "uv-workspace", ] [[package]] @@ -4589,7 +4640,6 @@ dependencies = [ "distribution-filename", "distribution-types", "fs-err", - "futures", "install-wheel-rs", "mimalloc", "owo-colors", @@ -4614,13 +4664,12 @@ dependencies = [ "uv-configuration", "uv-dispatch", "uv-distribution", - "uv-fs", "uv-git", "uv-installer", "uv-resolver", + "uv-settings", "uv-toolchain", "uv-types", - "uv-workspace", "walkdir", ] @@ -4794,6 +4843,14 @@ dependencies = [ ] [[package]] +name = "uv-macros" +version = "0.0.1" +dependencies = [ + "quote", + "syn 2.0.66", +] + +[[package]] name = "uv-normalize" version = "0.0.1" dependencies = [ @@ -4856,6 +4913,7 @@ dependencies = [ "itertools 0.13.0", "once-map", "owo-colors", + "path-slash", "pep440_rs", "pep508_rs", "petgraph", @@ -4887,6 +4945,29 @@ dependencies = [ ] [[package]] +name = "uv-settings" +version = "0.0.1" +dependencies = [ + "dirs-sys", + "distribution-types", + "fs-err", + "install-wheel-rs", + "pep508_rs", + "pypi-types", + "schemars", + "serde", + "thiserror", + "toml", + "tracing", + "uv-configuration", + "uv-fs", + "uv-macros", + "uv-normalize", + "uv-resolver", + "uv-toolchain", +] + +[[package]] name = "uv-state" version = "0.0.1" dependencies = [ @@ -4921,6 +5002,7 @@ dependencies = [ "schemars", "serde", "serde_json", + "target-lexicon", "temp-env", "tempfile", "test-log", @@ -4961,7 +5043,7 @@ dependencies = [ [[package]] name = "uv-version" -version = "0.2.11" +version = "0.2.13" [[package]] name = "uv-virtualenv" @@ -4990,29 +5072,6 @@ dependencies = [ ] [[package]] -name = "uv-workspace" -version = "0.0.1" -dependencies = [ - "dirs-sys", - "distribution-types", - "fs-err", - "install-wheel-rs", - "pep508_rs", - "pypi-types", - "schemars", - "serde", - "thiserror", - "toml", - "tracing", - "uv-configuration", - "uv-fs", - "uv-normalize", - "uv-resolver", - "uv-toolchain", - "uv-warnings", -] - -[[package]] name = "valuable" version = "0.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -5240,11 +5299,11 @@ dependencies = [ [[package]] name = "windows" -version = "0.56.0" +version = "0.57.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1de69df01bdf1ead2f4ac895dc77c9351aefff65b2f3db429a343f9cbf05e132" +checksum = "12342cb4d8e3b046f3d80effd474a7a02447231330ef77d71daa6fbc40681143" dependencies = [ - "windows-core 0.56.0", + "windows-core 0.57.0", "windows-targets 0.52.5", ] @@ -5259,12 +5318,12 @@ dependencies = [ [[package]] name = "windows-core" -version = "0.56.0" +version = "0.57.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4698e52ed2d08f8658ab0c39512a7c00ee5fe2688c65f8c0a4f06750d729f2a6" +checksum = "d2ed2439a290666cd67ecce2b0ffaad89c2a56b976b736e6ece670297897832d" dependencies = [ - "windows-implement 0.56.0", - "windows-interface 0.56.0", + "windows-implement 0.57.0", + "windows-interface 0.57.0", "windows-result", "windows-targets 0.52.5", ] @@ -5282,9 +5341,9 @@ dependencies = [ [[package]] name = "windows-implement" -version = "0.56.0" +version = "0.57.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f6fc35f58ecd95a9b71c4f2329b911016e6bec66b3f2e6a4aad86bd2e99e2f9b" +checksum = "9107ddc059d5b6fbfbffdfa7a7fe3e22a226def0b2608f72e9d552763d3e1ad7" dependencies = [ "proc-macro2", "quote", @@ -5304,9 +5363,9 @@ dependencies = [ [[package]] name = "windows-interface" -version = "0.56.0" +version = "0.57.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "08990546bf4edef8f431fa6326e032865f27138718c587dc21bc0265bbcb57cc" +checksum = "29bee4b38ea3cde66011baa44dba677c432a78593e202392d1e9070cf2a7fca7" dependencies = [ "proc-macro2", "quote", diff --git a/pkgs/by-name/uv/uv/package.nix b/pkgs/by-name/uv/uv/package.nix index 18e34d61fc2f4..5329a60df8b1c 100644 --- a/pkgs/by-name/uv/uv/package.nix +++ b/pkgs/by-name/uv/uv/package.nix @@ -16,14 +16,14 @@ python3Packages.buildPythonApplication rec { pname = "uv"; - version = "0.2.11"; + version = "0.2.13"; pyproject = true; src = fetchFromGitHub { owner = "astral-sh"; repo = "uv"; rev = "refs/tags/${version}"; - hash = "sha256-SkWhff9nYlbbzsXb9EWMzC0aKRU+LbJqClBddq1yl3Y="; + hash = "sha256-/YRmaPNTw3RsaB4bTb5UO0qXtRe2h1oD4Bav6VQ4W04="; }; cargoDeps = rustPlatform.importCargoLock { diff --git a/pkgs/by-name/vc/vcpkg-tool/package.nix b/pkgs/by-name/vc/vcpkg-tool/package.nix index c9b7aafc2ee50..6882589f2c13d 100644 --- a/pkgs/by-name/vc/vcpkg-tool/package.nix +++ b/pkgs/by-name/vc/vcpkg-tool/package.nix @@ -29,12 +29,15 @@ stdenv.mkDerivation (finalAttrs: { nativeBuildInputs = [ cmake - cmakerc - fmt ninja makeWrapper ]; + buildInputs = [ + cmakerc + fmt + ]; + patches = [ ./change-lock-location.patch ]; diff --git a/pkgs/by-name/ve/vencord/package-lock.json b/pkgs/by-name/ve/vencord/package-lock.json index df5bb7242cb07..de09d964393d8 100644 --- a/pkgs/by-name/ve/vencord/package-lock.json +++ b/pkgs/by-name/ve/vencord/package-lock.json @@ -1,12 +1,12 @@ { "name": "vencord", - "version": "1.8.9", + "version": "1.9.0", "lockfileVersion": 3, "requires": true, "packages": { "": { "name": "vencord", - "version": "1.8.9", + "version": "1.9.0", "license": "GPL-3.0-or-later", "dependencies": { "@sapphi-red/web-noise-suppressor": "0.3.3", @@ -894,9 +894,9 @@ "dev": true }, "node_modules/@types/node": { - "version": "18.19.34", - "resolved": "https://registry.npmjs.org/@types/node/-/node-18.19.34.tgz", - "integrity": "sha512-eXF4pfBNV5DAMKGbI02NnDtWrQ40hAN558/2vvS4gMpMIxaf6JmD7YjnZbq0Q9TDSSkKBamime8ewRoomHdt4g==", + "version": "18.19.38", + "resolved": "https://registry.npmjs.org/@types/node/-/node-18.19.38.tgz", + "integrity": "sha512-SApYXUF7si4JJ+lO2o6X60OPOnA6wPpbiB09GMCkQ+JAwpa9hxUVG8p7GzA08TKQn5OhzK57rj1wFj+185YsGg==", "dev": true, "dependencies": { "undici-types": "~5.26.4" @@ -1171,9 +1171,9 @@ } }, "node_modules/acorn": { - "version": "8.11.3", - "resolved": "https://registry.npmjs.org/acorn/-/acorn-8.11.3.tgz", - "integrity": "sha512-Y9rRfJG5jcKOE0CLisYbojUjIrIEE7AGMzA/Sm4BslANhbS+cDMpgBdcPT91oJ7OuJ9hYJBx59RjbhxVnrF8Xg==", + "version": "8.12.0", + "resolved": "https://registry.npmjs.org/acorn/-/acorn-8.12.0.tgz", + "integrity": "sha512-RTvkC4w+KNXrM39/lWCUaG0IbRkWdCv7W/IOW9oU6SawyxulvkQy5HQPVTKxEjczcUvapcrw3cFx/60VN/NRNw==", "dev": true, "bin": { "acorn": "bin/acorn" @@ -3299,12 +3299,15 @@ "dev": true }, "node_modules/is-core-module": { - "version": "2.13.1", - "resolved": "https://registry.npmjs.org/is-core-module/-/is-core-module-2.13.1.tgz", - "integrity": "sha512-hHrIjvZsftOsvKSn2TRYl63zvxsgE0K+0mYMoH6gD4omR5IWB2KynivBQczo3+wF1cCkjzvptnI9Q0sPU66ilw==", + "version": "2.14.0", + "resolved": "https://registry.npmjs.org/is-core-module/-/is-core-module-2.14.0.tgz", + "integrity": "sha512-a5dFJih5ZLYlRtDc0dZWP7RiKr6xIKzmn/oAYCDvdLThadVgyJwlaoQPmRtMSpz+rk0OGAgIu+TcM9HUF0fk1A==", "dev": true, "dependencies": { - "hasown": "^2.0.0" + "hasown": "^2.0.2" + }, + "engines": { + "node": ">= 0.4" }, "funding": { "url": "https://github.com/sponsors/ljharb" @@ -5549,9 +5552,9 @@ } }, "node_modules/typescript": { - "version": "5.4.5", - "resolved": "https://registry.npmjs.org/typescript/-/typescript-5.4.5.tgz", - "integrity": "sha512-vcI4UpRgg81oIRUFwR0WSIHKt11nJ7SAVlYNIu+QpqeyXP+gpQJy/Z4+F0aGxSE4MqwjyXvW/TzgkLAx2AGHwQ==", + "version": "5.5.2", + "resolved": "https://registry.npmjs.org/typescript/-/typescript-5.5.2.tgz", + "integrity": "sha512-NcRtPEOsPFFWjobJEtfihkLCZCXZt/os3zf8nTxjVH3RvTSxjrCamJpbExGvYOF+tFHc3pA65qpdwPbzjohhew==", "dev": true, "bin": { "tsc": "bin/tsc", diff --git a/pkgs/by-name/ve/vencord/package.nix b/pkgs/by-name/ve/vencord/package.nix index ae0127e0d555d..edf4ec820340d 100644 --- a/pkgs/by-name/ve/vencord/package.nix +++ b/pkgs/by-name/ve/vencord/package.nix @@ -5,8 +5,8 @@ , buildWebExtension ? false }: let - version = "1.8.9"; - gitHash = "008227c"; + version = "1.9.0"; + gitHash = "3505ada"; in buildNpmPackage rec { pname = "vencord"; @@ -16,7 +16,7 @@ buildNpmPackage rec { owner = "Vendicated"; repo = "Vencord"; rev = "v${version}"; - hash = "sha256-ASIb7iNtbdx9zAe9o/73M1hF9uBvXid63Vlx7wLpV5U="; + hash = "sha256-H2LyZJPm5D6uUskJdpaESlO+/U9KWDrz8q+ZdgcyGr0="; }; ESBUILD_BINARY_PATH = lib.getExe (esbuild.overrideAttrs (final: _: { @@ -34,7 +34,7 @@ buildNpmPackage rec { npmRebuildFlags = [ "|| true" ]; makeCacheWritable = true; - npmDepsHash = "sha256-4yC//tdUiEDoAV1lGYdFLW/bO69IMvG4SQV7bDotfyk="; + npmDepsHash = "sha256-hTOaAtAyIfnOwirqP2y/2MIOXLsUmO7CkyJvebO7C34="; npmFlags = [ "--legacy-peer-deps" ]; npmBuildScript = if buildWebExtension then "buildWeb" else "build"; npmBuildFlags = [ "--" "--standalone" "--disable-updater" ]; diff --git a/pkgs/by-name/vi/violet/package.nix b/pkgs/by-name/vi/violet/package.nix index b7d89e7e48727..35e13eea544f8 100644 --- a/pkgs/by-name/vi/violet/package.nix +++ b/pkgs/by-name/vi/violet/package.nix @@ -10,13 +10,13 @@ stdenv.mkDerivation (finalAttrs: { pname = "violet"; - version = "0.4.6"; + version = "0.5.0"; src = fetchFromGitHub { owner = "paullouisageneau"; repo = "violet"; rev = "v${finalAttrs.version}"; - hash = "sha256-a/WRFr6C6MWQBAG0PIDdSRVd4wnQgchPeTMoxUa2Qus="; + hash = "sha256-+cAgcGOMlhDdep8VuqP8DeELbMRXydRsD0xTyHqOuYM="; fetchSubmodules = true; }; diff --git a/pkgs/by-name/vn/vndr/package.nix b/pkgs/by-name/vn/vndr/package.nix new file mode 100644 index 0000000000000..79cbc3e7e4e42 --- /dev/null +++ b/pkgs/by-name/vn/vndr/package.nix @@ -0,0 +1,33 @@ +{ lib +, buildGoModule +, fetchFromGitHub +}: + +buildGoModule { + pname = "vndr"; + version = "0.1.2-unstable-2022-12-29"; + + src = fetchFromGitHub { + owner = "LK4D4"; + repo = "vndr"; + rev = "87603e47e8ea2ddac96f508fc9e9d6fc17b198b0"; + sha256 = "sha256-L7OemAPCv7epOVmjrDDtiGqQqzscm5zj3C6dsZP4uUc="; + }; + + vendorHash = null; + + postPatch = '' + go mod init github.com/LK4D4/vndr + ''; + + # Tests rely on the 'vndr' binary being in the PATH already. + doCheck = false; + + meta = { + description = "Stupid golang vendoring tool, inspired by docker vendor script"; + mainProgram = "vndr"; + homepage = "https://github.com/LK4D4/vndr"; + maintainers = with lib.maintainers; [ vdemeester rvolosatovs ]; + license = lib.licenses.asl20; + }; +} diff --git a/pkgs/by-name/wa/warp-terminal/versions.json b/pkgs/by-name/wa/warp-terminal/versions.json index ed1b85f3755ac..825439bdbb266 100644 --- a/pkgs/by-name/wa/warp-terminal/versions.json +++ b/pkgs/by-name/wa/warp-terminal/versions.json @@ -1,10 +1,10 @@ { "darwin": { - "hash": "sha256-ZfW4pTFmEEA/IRBfEMfnVDOxWm3SxGqUCec2nC6MADA=", - "version": "0.2024.06.11.08.02.stable_03" + "hash": "sha256-qlABqTy4tQp++k7MFXOjZV562m4rnlDqYLDL2sd0/QE=", + "version": "0.2024.06.18.08.02.stable_03" }, "linux": { - "hash": "sha256-xyE/Rc23+ael2oy0Hdq+kGzPYuq5+V8G3jAu3waA1Tk=", - "version": "0.2024.06.11.08.02.stable_03" + "hash": "sha256-8/9VgkKU7VO7m0Mgx24vM2Bv6+yqcSlhPLZ1slCTCEc=", + "version": "0.2024.06.18.08.02.stable_04" } } diff --git a/pkgs/by-name/wa/waybar/package.nix b/pkgs/by-name/wa/waybar/package.nix index cf8eb3b9b350e..134742caa2c86 100644 --- a/pkgs/by-name/wa/waybar/package.nix +++ b/pkgs/by-name/wa/waybar/package.nix @@ -150,9 +150,10 @@ stdenv.mkDerivation (finalAttrs: { mesonFlags = (lib.mapAttrsToList lib.mesonEnable { - "cava" = cavaSupport; + "cava" = cavaSupport && lib.asserts.assertMsg sndioSupport "Sndio support is required for Cava"; "dbusmenu-gtk" = traySupport; "jack" = jackSupport; + "libevdev" = evdevSupport; "libinput" = inputSupport; "libnl" = nlSupport; "libudev" = udevSupport; diff --git a/pkgs/by-name/we/weasis/package.nix b/pkgs/by-name/we/weasis/package.nix index ae500efec3fdd..999d815186228 100644 --- a/pkgs/by-name/we/weasis/package.nix +++ b/pkgs/by-name/we/weasis/package.nix @@ -73,7 +73,7 @@ in stdenv.mkDerivation rec { # Using changelog from releases as it is more accurate changelog = "https://github.com/nroduit/Weasis/releases/tag/v${version}"; license = with lib.licenses; [ asl20 epl20 ]; - maintainers = [ lib.maintainers.wolfangaukang ]; + maintainers = [ ]; platforms = [ "x86_64-linux" ]; mainProgram = "Weasis"; }; diff --git a/pkgs/by-name/we/werf/package.nix b/pkgs/by-name/we/werf/package.nix new file mode 100644 index 0000000000000..0e9e45603f70f --- /dev/null +++ b/pkgs/by-name/we/werf/package.nix @@ -0,0 +1,105 @@ +{ + lib, + stdenv, + buildGoModule, + fetchFromGitHub, + installShellFiles, + btrfs-progs, + testers, + werf, +}: + +buildGoModule rec { + pname = "werf"; + version = "2.6.1"; + + src = fetchFromGitHub { + owner = "werf"; + repo = "werf"; + rev = "v${version}"; + hash = "sha256-10RyCVF1w5xj/qhFXQTlyrt9HG/4di2fUwUtDHU6t44="; + }; + + vendorHash = "sha256-d1Dn+JN8tiBVx7YDbtvLW0YgIW2ENrEdx4gKatYy1hw="; + + proxyVendor = true; + + subPackages = [ "cmd/werf" ]; + + nativeBuildInputs = [ installShellFiles ]; + + buildInputs = + lib.optionals stdenv.isLinux [ btrfs-progs ] + ++ lib.optionals stdenv.hostPlatform.isGnu [ stdenv.cc.libc.static ]; + + CGO_ENABLED = if stdenv.isLinux then 1 else 0; + + ldflags = + [ + "-s" + "-w" + "-X github.com/werf/werf/v2/pkg/werf.Version=v${version}" + ] + ++ lib.optionals (CGO_ENABLED == 1) [ + "-extldflags=-static" + "-linkmode external" + ]; + + tags = + [ + "containers_image_openpgp" + "dfrunmount" + "dfrunnetwork" + "dfrunsecurity" + "dfssh" + ] + ++ lib.optionals (CGO_ENABLED == 1) [ + "cni" + "exclude_graphdriver_devicemapper" + "netgo" + "no_devmapper" + "osusergo" + "static_build" + ]; + + preCheck = + '' + # Test all targets. + unset subPackages + + # Remove tests that require external services. + rm -rf \ + integration/suites \ + pkg/true_git/*test.go \ + test/e2e + '' + + lib.optionalString (CGO_ENABLED == 0) '' + # A workaround for osusergo. + export USER=nixbld + ''; + + postInstall = '' + installShellCompletion --cmd werf \ + --bash <($out/bin/werf completion --shell=bash) \ + --zsh <($out/bin/werf completion --shell=zsh) + ''; + + passthru.tests.version = testers.testVersion { + package = werf; + command = "werf version"; + version = src.rev; + }; + + meta = with lib; { + description = "GitOps delivery tool"; + mainProgram = "werf"; + longDescription = '' + The CLI tool gluing Git, Docker, Helm & Kubernetes with any CI system to + implement CI/CD and Giterminism. + ''; + homepage = "https://werf.io"; + changelog = "https://github.com/werf/werf/releases/tag/${src.rev}"; + license = licenses.asl20; + maintainers = with maintainers; [ azahi ]; + }; +} diff --git a/pkgs/by-name/wh/whatsapp-for-mac/package.nix b/pkgs/by-name/wh/whatsapp-for-mac/package.nix new file mode 100644 index 0000000000000..4b46bc1aeea53 --- /dev/null +++ b/pkgs/by-name/wh/whatsapp-for-mac/package.nix @@ -0,0 +1,57 @@ +{ lib +, fetchzip +, stdenvNoCC +, writeShellApplication +, curl +, xmlstarlet +, common-updater-scripts +}: + +stdenvNoCC.mkDerivation (finalAttrs: { + pname = "whatsapp-for-mac"; + version = "2.24.11.85"; + + src = fetchzip { + extension = "zip"; + name = "WhatsApp.app"; + url = "https://web.whatsapp.com/desktop/mac_native/release/?version=${finalAttrs.version}&extension=zip&configuration=Release&branch=relbranch"; + hash = "sha256-vbgym7AfRi6kzZVMPRA6lP+6pL8cXnR7yt9hWPnt3+E="; + }; + + dontConfigure = true; + dontBuild = true; + + sourceRoot = "."; + + installPhase = '' + runHook preInstall + + mkdir -p "$out/Applications" + cp -r *.app "$out/Applications" + + runHook postInstall + ''; + + passthru.updateScript = lib.getExe (writeShellApplication { + name = "whatsapp-update-script"; + runtimeInputs = [ + curl + xmlstarlet + common-updater-scripts + ]; + text = '' + url=$(curl --silent "https://web.whatsapp.com/desktop/mac_native/updates/?branch=relbranch&configuration=Release") + version=$(echo "$url" | xmlstarlet sel -t -v "substring-before(substring-after(//enclosure/@url, 'version='), '&')") + update-source-version whatsapp-for-mac "$version" --file=./pkgs/by-name/wh/whatsapp-for-mac/package.nix + ''; + }); + + meta = { + description = "Native desktop client for WhatsApp"; + homepage = "https://www.whatsapp.com/"; + license = lib.licenses.unfree; + maintainers = with lib.maintainers; [ iivusly ]; + platforms = lib.platforms.darwin; + sourceProvenance = with lib.sourceTypes; [ binaryNativeCode ]; + }; +}) diff --git a/pkgs/by-name/wl/wl-clipboard-rs/package.nix b/pkgs/by-name/wl/wl-clipboard-rs/package.nix index 509845a637ee2..2b881a35d2568 100644 --- a/pkgs/by-name/wl/wl-clipboard-rs/package.nix +++ b/pkgs/by-name/wl/wl-clipboard-rs/package.nix @@ -8,16 +8,16 @@ rustPlatform.buildRustPackage rec { pname = "wl-clipboard-rs"; - version = "0.8.1"; + version = "0.9.0"; src = fetchFromGitHub { owner = "YaLTeR"; repo = "wl-clipboard-rs"; rev = "v${version}"; - hash = "sha256-tNmpGBg21IuhKEzY15O2MKVpMB+eCjvRVwVUahADuJU="; + hash = "sha256-qwlR/PJivCgQTXe027zuQxq0iVJ3/BLg6LAD3w5tb9Y="; }; - cargoHash = "sha256-0Ix+fF1QO1KU8FIOb8EV4iYXe4S69sZOxCdxYccL8m0="; + cargoHash = "sha256-C3vhZq5IHtbfg2mYYdQRqaLSA0iSER8zRaKi72FCd+E="; cargoBuildFlags = [ "--package=wl-clipboard-rs" diff --git a/pkgs/by-name/ws/wstunnel/package.nix b/pkgs/by-name/ws/wstunnel/package.nix index 9e172a08f3757..cfcaa1dc8e475 100644 --- a/pkgs/by-name/ws/wstunnel/package.nix +++ b/pkgs/by-name/ws/wstunnel/package.nix @@ -1,32 +1,44 @@ -{ fetchFromGitHub +{ lib +, fetchFromGitHub , rustPlatform -, lib +, testers +, wstunnel +, nixosTests }: -rustPlatform.buildRustPackage rec { +let + version = "9.7.0"; +in + +rustPlatform.buildRustPackage { pname = "wstunnel"; - version = "9.6.2"; + inherit version; src = fetchFromGitHub { owner = "erebe"; - repo = "wstunnel"; + repo = "wstunnel"; rev = "v${version}"; - hash = "sha256-0r+8C8Gf3/s3opzplzc22d9VVp39FtBq1bYkxlmtqjg="; + hash = "sha256-8bLccR6ZmldmrvjlZKFHEa4PoLzyUcLkyQbwSrJjoyY="; }; - cargoHash = "sha256-hHVxa7Ihmuuf26ZSzGmrHA2RczhzXtse3h1M4cNCvhw="; + cargoHash = "sha256-IAq7Fyr6Ne1Bq18WfqBoppel9FOWSs8PkiXKMwcJ26c="; checkFlags = [ - # make use of network connection + # Tries to launch a test container "--skip=tcp::tests::test_proxy_connection" ]; + passthru.tests = { + version = testers.testVersion { package = wstunnel; }; + nixosTest = nixosTests.wstunnel; + }; + meta = { - description = "Tunneling program over websocket protocol"; + description = "Tunnel all your traffic over Websocket or HTTP2 - Bypass firewalls/DPI"; + homepage = "https://github.com/erebe/wstunnel"; + changelog = "https://github.com/erebe/wstunnel/releases/tag/v${version}"; + license = lib.licenses.bsd3; + maintainers = with lib.maintainers; [ rvdp neverbehave ]; mainProgram = "wstunnel"; - homepage = "https://github.com/erebe/wstunnel"; - license = with lib.licenses; [ bsd3 ]; - maintainers = with lib.maintainers; [ neverbehave ]; - platforms = lib.platforms.linux; }; } diff --git a/pkgs/by-name/wt/wttrbar/package.nix b/pkgs/by-name/wt/wttrbar/package.nix index 41ecd4eb53d8c..370630423c78d 100644 --- a/pkgs/by-name/wt/wttrbar/package.nix +++ b/pkgs/by-name/wt/wttrbar/package.nix @@ -8,18 +8,18 @@ rustPlatform.buildRustPackage rec { pname = "wttrbar"; - version = "0.10.2"; + version = "0.10.4"; src = fetchFromGitHub { owner = "bjesus"; repo = "wttrbar"; rev = version; - hash = "sha256-lwlfarnu2PC5toAf6FAefnpxDlzzwphrP+zXRQ2DQeQ="; + hash = "sha256-2DaFbwzxpV5vNOey9me/Tj5t9idszTZHoj1cl4RkoeE="; }; buildInputs = lib.optionals stdenv.isDarwin (with darwin.apple_sdk_11_0.frameworks; [ Security SystemConfiguration ]); - cargoHash = "sha256-H3UpBRf97JsHudq6naZxMnpIzda0v7teDjgDdgluul0="; + cargoHash = "sha256-rbsRW+c3rzHCMwFQAS22tIfbwudaqpVmRsGXFKOEWkQ="; passthru.updateScript = nix-update-script { }; diff --git a/pkgs/by-name/xe/xemu/package.nix b/pkgs/by-name/xe/xemu/package.nix index ee14a60ab4429..b1205af441336 100644 --- a/pkgs/by-name/xe/xemu/package.nix +++ b/pkgs/by-name/xe/xemu/package.nix @@ -27,14 +27,14 @@ stdenv.mkDerivation (finalAttrs: { pname = "xemu"; - version = "0.7.123"; + version = "0.7.127"; src = fetchFromGitHub { owner = "xemu-project"; repo = "xemu"; rev = "v${finalAttrs.version}"; fetchSubmodules = true; - hash = "sha256-8Nfy6x3+8n1AlXnZmbISZrncnU04iaQPx69e46XgxUU="; + hash = "sha256-qf4zc+qZSLZLjqpKUVgSEhb5VGAzkiRlJSsSCCbNImU="; }; nativeBuildInputs = diff --git a/pkgs/tools/misc/xmonad-log/default.nix b/pkgs/by-name/xm/xmonad-log/package.nix index 9ba7941b45f79..385d5edf90cfd 100644 --- a/pkgs/tools/misc/xmonad-log/default.nix +++ b/pkgs/by-name/xm/xmonad-log/package.nix @@ -1,19 +1,18 @@ -{ lib, buildGoPackage, fetchFromGitHub }: +{ lib, buildGoModule, fetchFromGitHub }: -buildGoPackage rec { +buildGoModule { pname = "xmonad-log"; - version = "0.1.0"; - - goPackagePath = "github.com/xintron/xmonad-log"; + version = "0.1.0-unstable-2024-06-14"; src = fetchFromGitHub { owner = "xintron"; repo = "xmonad-log"; - rev = version; - sha256 = "1il6v0zcjw0pfb1hjj198y94jmlcx255h422ph0f1zr7afqkzmaw"; + rev = "70c76d59c22cf5f412467cd42fa9ff34eeb2bd1b"; + sha256 = "sha256-hDYb3mSX2+FX/2uazCKPXmNj0avDlutwSMjST7wLBVY="; }; - goDeps = ./deps.nix; + vendorHash = "sha256-58zK6t3rb+19ilaQaNgsMVFQBYKPIV40ww8klrGbpnw="; + proxyVendor = true; meta = with lib; { description = "xmonad DBus monitoring solution"; diff --git a/pkgs/by-name/xo/xonsh/package.nix b/pkgs/by-name/xo/xonsh/package.nix index de199ff4bc05c..45c14cb4f2efe 100644 --- a/pkgs/by-name/xo/xonsh/package.nix +++ b/pkgs/by-name/xo/xonsh/package.nix @@ -1,24 +1,118 @@ -{ lib -, callPackage -, extraPackages ? (ps: [ ]) -, runCommand +{ + lib, + callPackage, + coreutils, + fetchFromGitHub, + git, + gitUpdater, + glibcLocales, + python3Packages, }: let - xonsh-unwrapped = callPackage ./unwrapped.nix { }; - inherit (xonsh-unwrapped.passthru) python; - pythonEnv = python.withPackages (ps: [ - (ps.toPythonModule xonsh-unwrapped) - ] ++ extraPackages ps); + argset = { + pname = "xonsh"; + version = "0.17.0"; + pyproject = true; + + # PyPI package ships incomplete tests + src = fetchFromGitHub { + owner = "xonsh"; + repo = "xonsh"; + rev = "refs/tags/${argset.version}"; + hash = "sha256-9sRY9aetWWXzCFfgdHCBCia48THIJcMxsYMnFR6Xa8A="; + }; + + nativeBuildInputs = with python3Packages; [ + setuptools + wheel + ]; + + propagatedBuildInputs = (with python3Packages; [ + ply + prompt-toolkit + pygments + ]); + + nativeCheckInputs = [ + git + glibcLocales + ] ++ (with python3Packages; [ + pip + pyte + pytest-mock + pytest-subprocess + pytestCheckHook + requests + ]); + + disabledTests = [ + # fails on sandbox + "test_colorize_file" + "test_loading_correctly" + "test_no_command_path_completion" + "test_bsd_man_page_completions" + "test_xonsh_activator" + # fails on non-interactive shells + "test_capture_always" + "test_casting" + "test_command_pipeline_capture" + "test_dirty_working_directory" + "test_man_completion" + "test_vc_get_branch" + "test_bash_and_is_alias_is_only_functional_alias" + "test_spec_modifier_alias_output_format" + # flaky tests + "test_script" + "test_alias_stability" + "test_alias_stability_exception" + "test_complete_import" + "test_subproc_output_format" + ]; + + disabledTestPaths = [ + # fails on sandbox + "tests/completers/test_command_completers.py" + "tests/test_ptk_highlight.py" + "tests/test_ptk_shell.py" + # fails on non-interactive shells + "tests/prompt/test_gitstatus.py" + "tests/completers/test_bash_completer.py" + ]; + + env.LC_ALL = "en_US.UTF-8"; + + postPatch = '' + sed -ie 's|/bin/ls|${lib.getExe' coreutils "ls"}|' tests/test_execer.py + sed -ie 's|SHELL=xonsh|SHELL=$out/bin/xonsh|' tests/test_integrations.py + + for script in tests/test_integrations.py scripts/xon.sh $(find -name "*.xsh"); do + sed -ie 's|/usr/bin/env|${lib.getExe' coreutils "env"}|' $script + done + patchShebangs . + ''; + + preCheck = '' + export HOME=$TMPDIR + export PATH=$out/bin:$PATH + ''; + + passthru = { + shellPath = "/bin/xonsh"; + python = python3Packages.python; # To the wrapper + wrapper = callPackage ./wrapper.nix { }; + updateScript = gitUpdater { }; + }; + + meta = { + homepage = "https://xon.sh/"; + description = "A Python-ish, BASHwards-compatible shell"; + changelog = "https://github.com/xonsh/xonsh/raw/main/CHANGELOG.rst"; + license = with lib.licenses; [ bsd3 ]; + mainProgram = "xonsh"; + maintainers = with lib.maintainers; [ AndersonTorres samlukeyes123 ]; + }; + }; in -runCommand "xonsh-${xonsh-unwrapped.version}" -{ - inherit (xonsh-unwrapped) pname version meta; - passthru = xonsh-unwrapped.passthru // { unwrapped = xonsh-unwrapped; }; -} '' - mkdir -p $out/bin - for bin in ${lib.getBin xonsh-unwrapped}/bin/*; do - ln -s ${pythonEnv}/bin/$(basename "$bin") $out/bin/ - done -'' +python3Packages.buildPythonApplication argset diff --git a/pkgs/by-name/xo/xonsh/unwrapped.nix b/pkgs/by-name/xo/xonsh/unwrapped.nix deleted file mode 100644 index 28d98911f49f5..0000000000000 --- a/pkgs/by-name/xo/xonsh/unwrapped.nix +++ /dev/null @@ -1,108 +0,0 @@ -{ lib -, coreutils -, fetchFromGitHub -, git -, gitUpdater -, glibcLocales -, python3 -}: - -let - pname = "xonsh"; - version = "0.15.1"; -in -python3.pkgs.buildPythonApplication { - inherit pname version; - - pyproject = true; - - # fetch from github because the pypi package ships incomplete tests - src = fetchFromGitHub { - owner = "xonsh"; - repo = "xonsh"; - rev = "refs/tags/${version}"; - hash = "sha256-mHOCkUGiSSPmkIQ4tgRZIaCTLgnx39SMwug5EIx/jrU="; - }; - - nativeBuildInputs = with python3.pkgs; [ - setuptools - wheel - ]; - - propagatedBuildInputs = with python3.pkgs; [ - ply - prompt-toolkit - pygments - ]; - - env.LC_ALL = "en_US.UTF-8"; - - postPatch = '' - sed -ie "s|/bin/ls|${coreutils}/bin/ls|" tests/test_execer.py - sed -ie "s|SHELL=xonsh|SHELL=$out/bin/xonsh|" tests/test_integrations.py - - sed -ie 's|/usr/bin/env|${coreutils}/bin/env|' tests/test_integrations.py - sed -ie 's|/usr/bin/env|${coreutils}/bin/env|' scripts/xon.sh - find scripts -name 'xonsh*' -exec sed -i -e "s|env -S|env|" {} \; - find -name "*.xsh" | xargs sed -ie 's|/usr/bin/env|${coreutils}/bin/env|' - patchShebangs . - ''; - - disabledTests = [ - # fails on sandbox - "test_colorize_file" - "test_loading_correctly" - "test_no_command_path_completion" - "test_bsd_man_page_completions" - "test_xonsh_activator" - # fails on non-interactive shells - "test_capture_always" - "test_casting" - "test_command_pipeline_capture" - "test_dirty_working_directory" - "test_man_completion" - "test_vc_get_branch" - "test_bash_and_is_alias_is_only_functional_alias" - ]; - - disabledTestPaths = [ - # fails on sandbox - "tests/completers/test_command_completers.py" - "tests/test_ptk_highlight.py" - "tests/test_ptk_shell.py" - # fails on non-interactive shells - "tests/prompt/test_gitstatus.py" - "tests/completers/test_bash_completer.py" - ]; - - nativeCheckInputs = [ - git - glibcLocales - ] ++ (with python3.pkgs; [ - pip - pyte - pytest-mock - pytest-subprocess - pytestCheckHook - ]); - - preCheck = '' - export HOME=$TMPDIR - ''; - - dontWrapPythonPrograms = true; - - passthru = { - shellPath = "/bin/xonsh"; - python = python3; # To the wrapper - updateScript = gitUpdater { }; - }; - - meta = { - homepage = "https://xon.sh/"; - description = "Python-ish, BASHwards-compatible shell"; - changelog = "https://github.com/xonsh/xonsh/raw/${version}/CHANGELOG.rst"; - license = with lib.licenses; [ bsd3 ]; - maintainers = with lib.maintainers; [ AndersonTorres ]; - }; -} diff --git a/pkgs/by-name/xo/xonsh/wrapper.nix b/pkgs/by-name/xo/xonsh/wrapper.nix new file mode 100644 index 0000000000000..1b9637f04dd64 --- /dev/null +++ b/pkgs/by-name/xo/xonsh/wrapper.nix @@ -0,0 +1,25 @@ +{ + lib, + runCommand, + xonsh, + # configurable options + extraPackages ? (ps: [ ]), +}: + +let + inherit (xonsh.passthru) python; + + pythonEnv = python.withPackages + (ps: [ (ps.toPythonModule xonsh) ] ++ extraPackages ps); +in +runCommand + "xonsh-wrapped-${xonsh.version}" + { + inherit (xonsh) pname version meta passthru; + } + '' + mkdir -p $out/bin + for bin in ${lib.getBin xonsh}/bin/*; do + ln -s ${pythonEnv}/bin/$(basename "$bin") $out/bin/ + done + '' diff --git a/pkgs/by-name/zi/zitadel/package.nix b/pkgs/by-name/zi/zitadel/package.nix index 14c9ff1a3ad81..567bd93f69611 100644 --- a/pkgs/by-name/zi/zitadel/package.nix +++ b/pkgs/by-name/zi/zitadel/package.nix @@ -148,6 +148,6 @@ buildGoModule rec { platforms = platforms.linux ++ platforms.darwin; license = licenses.asl20; sourceProvenance = [ sourceTypes.fromSource ]; - maintainers = with maintainers; [ Sorixelle ]; + maintainers = [ ]; }; } diff --git a/pkgs/by-name/zo/zoraxy/package.nix b/pkgs/by-name/zo/zoraxy/package.nix index 5feddb6072a51..949984dd661a0 100644 --- a/pkgs/by-name/zo/zoraxy/package.nix +++ b/pkgs/by-name/zo/zoraxy/package.nix @@ -6,17 +6,17 @@ buildGoModule rec { pname = "zoraxy"; - version = "3.0.6"; + version = "3.0.7"; src = fetchFromGitHub { owner = "tobychui"; repo = "zoraxy"; rev = "refs/tags/${version}"; - sha256 = "sha256-Pv7Ey3d07+gJfMyQxC5Do0g5HZGcPXttpvmN0YNjXvY="; + sha256 = "sha256-fyhnP+MtX5dYR9yzIp7vpahJKbkuvopZSSTwt7JnaMI="; }; sourceRoot = "${src.name}/src"; - vendorHash = "sha256-YI6LSccPDnVhGyPIEFIF41ex0WJlHtb3nP+8+1G/LA0="; + vendorHash = "sha256-FiE7j2XB6QcJBu1wtTpBCkfi0ac8pzx6RSOcVrsaOwQ="; checkFlags = let diff --git a/pkgs/by-name/zp/zpaqfranz/package.nix b/pkgs/by-name/zp/zpaqfranz/package.nix index 0801c920c653d..e951b59eb4679 100644 --- a/pkgs/by-name/zp/zpaqfranz/package.nix +++ b/pkgs/by-name/zp/zpaqfranz/package.nix @@ -6,13 +6,13 @@ stdenv.mkDerivation (finalAttrs: { pname = "zpaqfranz"; - version = "59.7"; + version = "59.8"; src = fetchFromGitHub { owner = "fcorbelli"; repo = "zpaqfranz"; rev = finalAttrs.version; - hash = "sha256-BP9aAzS5ZeT0mZeheQY7tcnTLuJZMWz3se1phv5u5BI="; + hash = "sha256-N3R/M0TS8XzRilQT4NFqIlfo2NqfunA38IrQBz5uaPg="; }; nativeBuildInputs = [ diff --git a/pkgs/by-name/zs/zsh-zhooks/package.nix b/pkgs/by-name/zs/zsh-zhooks/package.nix new file mode 100644 index 0000000000000..1fea11eb4e6a5 --- /dev/null +++ b/pkgs/by-name/zs/zsh-zhooks/package.nix @@ -0,0 +1,33 @@ +{ + lib, + stdenv, + fetchFromGitHub, +}: +stdenv.mkDerivation { + pname = "zsh-zhooks"; + version = "0-unstable-10-31-2021"; + + src = fetchFromGitHub { + owner = "agkozak"; + repo = "zhooks"; + rev = "e6616b4a2786b45a56a2f591b79439836e678d22"; + sha256 = "sha256-zahXMPeJ8kb/UZd85RBcMbomB7HjfEKzQKjF2NnumhQ="; + }; + + dontBuild = true; + + installPhase = '' + install -m755 -D zhooks.plugin.zsh --target-directory $out/share/zsh/zhooks + ''; + + meta = { + description = "A tool for displaying the code for all Zsh hook functions"; + homepage = "https://github.com/agkozak/zhooks"; + license = lib.licenses.mit; + longDescription = '' + This Zsh plugin is a tool for displaying the code for all Zsh hook functions (such as precmd), as well as the contents of + hook arrays (such as precmd_functions). + ''; + maintainers = [ lib.maintainers.fidgetingbits ]; + }; +} diff --git a/pkgs/data/documentation/man-pages/default.nix b/pkgs/data/documentation/man-pages/default.nix index 3ea67ac4501dd..1a58c4380a767 100644 --- a/pkgs/data/documentation/man-pages/default.nix +++ b/pkgs/data/documentation/man-pages/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "man-pages"; - version = "6.8"; + version = "6.9"; src = fetchurl { url = "mirror://kernel/linux/docs/man-pages/${pname}-${version}.tar.xz"; - hash = "sha256-ucawpCD4ORSL4EsvwTqFaSMTco1U1HxpyKE4N5Zl0iY="; + hash = "sha256-0Uyv9UzGYvNLG3C89i1OJ+TC/SYGcqNbbnSvcbP3H4g="; }; makeFlags = [ diff --git a/pkgs/data/fonts/vegur/default.nix b/pkgs/data/fonts/vegur/default.nix index b161ad4e3e352..8c1f6c4bf980e 100644 --- a/pkgs/data/fonts/vegur/default.nix +++ b/pkgs/data/fonts/vegur/default.nix @@ -26,7 +26,7 @@ stdenvNoCC.mkDerivation (finalAttrs: { homepage = "http://dotcolon.net/font/vegur/"; description = "Humanist sans serif font"; platforms = platforms.all; - maintainers = with maintainers; [ minijackson samueldr ]; + maintainers = with maintainers; [ minijackson ]; license = licenses.cc0; }; }) diff --git a/pkgs/data/themes/dracula-theme/default.nix b/pkgs/data/themes/dracula-theme/default.nix index 85a7d205a9189..d37f698b41d3a 100644 --- a/pkgs/data/themes/dracula-theme/default.nix +++ b/pkgs/data/themes/dracula-theme/default.nix @@ -2,7 +2,7 @@ let themeName = "Dracula"; - version = "4.0.0-unstable-2024-06-11"; + version = "4.0.0-unstable-2024-06-19"; in stdenvNoCC.mkDerivation { pname = "dracula-theme"; @@ -11,8 +11,8 @@ stdenvNoCC.mkDerivation { src = fetchFromGitHub { owner = "dracula"; repo = "gtk"; - rev = "4a5fe924a2b17f82a617f79ef661f1783cacc988"; - hash = "sha256-azwkng3JTTBlSaisbJUdh9NlMZfDbD3OvTQP++J0oO8="; + rev = "91b9c8572d7cfa06b24eee72d415cc8931c04934"; + hash = "sha256-WQsPn5s8xZ/wdVJUJb1aCTAjOskj/qthZ48HHDVIcNk="; }; propagatedUserEnvPkgs = [ diff --git a/pkgs/desktops/budgie/budgie-desktop/default.nix b/pkgs/desktops/budgie/budgie-desktop/default.nix index 004f2b1ad7efa..9e4ec9c42a2b4 100644 --- a/pkgs/desktops/budgie/budgie-desktop/default.nix +++ b/pkgs/desktops/budgie/budgie-desktop/default.nix @@ -1,7 +1,6 @@ { lib , stdenv , fetchFromGitHub -, fetchpatch2 , accountsservice , alsa-lib , budgie-screensaver @@ -38,39 +37,18 @@ stdenv.mkDerivation (finalAttrs: { pname = "budgie-desktop"; - version = "10.9.1"; + version = "10.9.2"; src = fetchFromGitHub { owner = "BuddiesOfBudgie"; repo = "budgie-desktop"; rev = "v${finalAttrs.version}"; fetchSubmodules = true; - hash = "sha256-H+J/zFUjiXbr5ynDkkjrRsEbyO4LPOhqe8DdG60ikRw="; + hash = "sha256-lDsQlUAa79gnM8wC5pwyquvFyEiayH4W4gD/uyC5Koo="; }; patches = [ ./plugins.patch - - # Fix workspace applet window icon click not performing workspace switch - # https://github.com/BuddiesOfBudgie/budgie-desktop/issues/524 - (fetchpatch2 { - url = "https://github.com/BuddiesOfBudgie/budgie-desktop/commit/9b775d613ad0c324db628ed5a32d3fccc90f82d6.patch"; - hash = "sha256-QtPviPW7pJYZIs28CYwE3N8vcDswqnjD6d0WVPFchL4="; - }) - - # Work around even more SNI noncompliance - # https://github.com/BuddiesOfBudgie/budgie-desktop/issues/539 - (fetchpatch2 { - url = "https://github.com/BuddiesOfBudgie/budgie-desktop/commit/84269e2fcdcac6d737ee5100881e8b306eaae570.patch"; - hash = "sha256-1Uj+6GZ9/oDQOt+5P8UYiVP3P0BrsJe3HqXVLkWCkAM="; - }) - - # vapi: Update libxfce4windowing to 4.19.3 - # https://github.com/BuddiesOfBudgie/budgie-desktop/issues/546 - (fetchpatch2 { - url = "https://github.com/BuddiesOfBudgie/budgie-desktop/commit/a040ccb96094f1d3a1ee81a6733c9434722bdf6c.patch"; - hash = "sha256-9eMYB5Zyn3BDYvAwORXTHaPGYDP7LnqHAwp+6Wy6XLk="; - }) ]; nativeBuildInputs = [ diff --git a/pkgs/desktops/cinnamon/bulky/default.nix b/pkgs/desktops/cinnamon/bulky/default.nix index c3927ece25485..587018695d59b 100644 --- a/pkgs/desktops/cinnamon/bulky/default.nix +++ b/pkgs/desktops/cinnamon/bulky/default.nix @@ -13,13 +13,13 @@ stdenv.mkDerivation rec { pname = "bulky"; - version = "3.2"; + version = "3.3"; src = fetchFromGitHub { owner = "linuxmint"; repo = "bulky"; rev = version; - hash = "sha256-Zt5J8+CYiPxp/e1wDaJp7R91vYJmGNqPQs39J/OIwiQ="; + hash = "sha256-S4wAcwlJnXHYQEnP9WApCTjvVHKMrAt7gQ2l8zvFrs0="; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/cinnamon/pix/default.nix b/pkgs/desktops/cinnamon/pix/default.nix index e02d43ba16c03..8d74bdbe7122e 100644 --- a/pkgs/desktops/cinnamon/pix/default.nix +++ b/pkgs/desktops/cinnamon/pix/default.nix @@ -31,13 +31,13 @@ stdenv.mkDerivation rec { pname = "pix"; - version = "3.4.0"; + version = "3.4.1"; src = fetchFromGitHub { owner = "linuxmint"; repo = pname; rev = version; - sha256 = "sha256-XXt5tq+Zfm6fqorsFAWV3guii6gTK5JRgw26GkNkoos="; + sha256 = "sha256-QkgjUzoBOXE3mxXy/Lq3YkHq7f9oE97FeP7PHIBDHvc="; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/cinnamon/warpinator/default.nix b/pkgs/desktops/cinnamon/warpinator/default.nix index ca93799f58008..3968a87c13898 100644 --- a/pkgs/desktops/cinnamon/warpinator/default.nix +++ b/pkgs/desktops/cinnamon/warpinator/default.nix @@ -36,13 +36,13 @@ let in stdenv.mkDerivation rec { pname = "warpinator"; - version = "1.8.4"; + version = "1.8.5"; src = fetchFromGitHub { owner = "linuxmint"; repo = pname; rev = version; - hash = "sha256-T1boMqzAGMjUD62ZAlWNOe3xUx5H5ZwpR7MNipy/LKA="; + hash = "sha256-PODQvdi4CARHOyDG0dal6ge8icyFnvJXOdhqEcbcrAk="; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/cinnamon/xapp/default.nix b/pkgs/desktops/cinnamon/xapp/default.nix index b55830b56c45b..d6f4536eef8b3 100644 --- a/pkgs/desktops/cinnamon/xapp/default.nix +++ b/pkgs/desktops/cinnamon/xapp/default.nix @@ -22,7 +22,7 @@ stdenv.mkDerivation rec { pname = "xapp"; - version = "2.8.3"; + version = "2.8.4"; outputs = [ "out" "dev" ]; @@ -30,7 +30,7 @@ stdenv.mkDerivation rec { owner = "linuxmint"; repo = pname; rev = version; - hash = "sha256-uWBHCsKcW0vP2HYHQWXPrCSr5NsN2nYWAzBByxJBVrY="; + hash = "sha256-Q82UI2GEv2g01pcrvn8JBOf9FgjbG0c1qfSINx0CouQ="; }; # Recommended by upstream, which enables the build of xapp-debug. diff --git a/pkgs/desktops/cinnamon/xreader/default.nix b/pkgs/desktops/cinnamon/xreader/default.nix index f38392bd42126..94386d42815fc 100644 --- a/pkgs/desktops/cinnamon/xreader/default.nix +++ b/pkgs/desktops/cinnamon/xreader/default.nix @@ -27,13 +27,13 @@ stdenv.mkDerivation rec { pname = "xreader"; - version = "4.2.0"; + version = "4.2.1"; src = fetchFromGitHub { owner = "linuxmint"; repo = pname; rev = version; - sha256 = "sha256-MWSAyXQcE8cDdzJISFV7UHheHX+7zF1Ula+LGicvUPM="; + sha256 = "sha256-+q0fZA72m5T5ZB6bYWPWdQGxLpwjNp5Vak2TzaGwGWQ="; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/cinnamon/xviewer/default.nix b/pkgs/desktops/cinnamon/xviewer/default.nix index a7d65980d97e4..5f45ed4f6bfa3 100644 --- a/pkgs/desktops/cinnamon/xviewer/default.nix +++ b/pkgs/desktops/cinnamon/xviewer/default.nix @@ -27,13 +27,13 @@ stdenv.mkDerivation rec { pname = "xviewer"; - version = "3.4.4"; + version = "3.4.5"; src = fetchFromGitHub { owner = "linuxmint"; repo = pname; rev = version; - sha256 = "sha256-Kr3GoroQUzOePJiYeJYE9wrqWKcfX7ncu3tZSxOdnvU="; + sha256 = "sha256-J6KDkGPbcRBofsJVmd+1IEapSfSd3ftjz0AggvBI8ck="; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/mate/mate-panel/default.nix b/pkgs/desktops/mate/mate-panel/default.nix index 077abca208f2e..2762c0ce36057 100644 --- a/pkgs/desktops/mate/mate-panel/default.nix +++ b/pkgs/desktops/mate/mate-panel/default.nix @@ -25,11 +25,11 @@ stdenv.mkDerivation rec { pname = "mate-panel"; - version = "1.28.1"; + version = "1.28.2"; src = fetchurl { url = "https://pub.mate-desktop.org/releases/${lib.versions.majorMinor version}/${pname}-${version}.tar.xz"; - sha256 = "UTPGT1lpro7uvm6LukUN6nkssL4G2a4cNuhWnS+FJLo="; + sha256 = "Z4pD6DeqJxhJQgT93xm7kGzwfl2A/S4d3nRfJtKtujM="; }; nativeBuildInputs = [ diff --git a/pkgs/development/compilers/ghc/8.10.7.nix b/pkgs/development/compilers/ghc/8.10.7.nix index cf867408dd315..c8669a2761f82 100644 --- a/pkgs/development/compilers/ghc/8.10.7.nix +++ b/pkgs/development/compilers/ghc/8.10.7.nix @@ -131,23 +131,44 @@ let targetCC = builtins.head toolsForTarget; - # Sometimes we have to dispatch between the bintools wrapper and the unwrapped - # derivation for certain tools depending on the platform. - bintoolsFor = { - # GHC needs install_name_tool on all darwin platforms. On aarch64-darwin it is - # part of the bintools wrapper (due to codesigning requirements), but not on - # x86_64-darwin. - install_name_tool = - if stdenv.targetPlatform.isAarch64 - then targetCC.bintools - else targetCC.bintools.bintools; - # Same goes for strip. - strip = - # TODO(@sternenseemann): also use wrapper if linker == "bfd" or "gold" - if stdenv.targetPlatform.isAarch64 && stdenv.targetPlatform.isDarwin - then targetCC.bintools - else targetCC.bintools.bintools; - }; + # toolPath calculates the absolute path to the name tool associated with a + # given `stdenv.cc` derivation, i.e. it picks the correct derivation to take + # the tool from (cc, cc.bintools, cc.bintools.bintools) and adds the correct + # subpath of the tool. + toolPath = name: cc: + let + tools = { + "cc" = cc; + "c++" = cc; + as = cc.bintools.bintools; + + ar = cc.bintools.bintools; + ranlib = cc.bintools.bintools; + nm = cc.bintools.bintools; + readelf = cc.bintools.bintools; + + ld = cc.bintools; + "ld.gold" = cc.bintools; + + otool = cc.bintools.bintools; + + # GHC needs install_name_tool on all darwin platforms. On aarch64-darwin it is + # part of the bintools wrapper (due to codesigning requirements), but not on + # x86_64-darwin. We decide based on target platform to have consistent tools + # across all GHC stages. + install_name_tool = + if stdenv.targetPlatform.isAarch64 + then cc.bintools + else cc.bintools.bintools; + # Same goes for strip. + strip = + # TODO(@sternenseemann): also use wrapper if linker == "bfd" or "gold" + if stdenv.targetPlatform.isAarch64 && stdenv.targetPlatform.isDarwin + then cc.bintools + else cc.bintools.bintools; + }.${name}; + in + "${tools}/bin/${tools.targetPrefix}${name}"; # Use gold either following the default, or to avoid the BFD linker due to some bugs / perf issues. # But we cannot avoid BFD when using musl libc due to https://sourceware.org/bugzilla/show_bug.cgi?id=23856 @@ -255,19 +276,19 @@ stdenv.mkDerivation (rec { done # GHC is a bit confused on its cross terminology, as these would normally be # the *host* tools. - export CC="${targetCC}/bin/${targetCC.targetPrefix}cc" - export CXX="${targetCC}/bin/${targetCC.targetPrefix}c++" + export CC="${toolPath "cc" targetCC}" + export CXX="${toolPath "c++" targetCC}" # Use gold to work around https://sourceware.org/bugzilla/show_bug.cgi?id=16177 - export LD="${targetCC.bintools}/bin/${targetCC.bintools.targetPrefix}ld${lib.optionalString useLdGold ".gold"}" - export AS="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}as" - export AR="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}ar" - export NM="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}nm" - export RANLIB="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}ranlib" - export READELF="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}readelf" - export STRIP="${bintoolsFor.strip}/bin/${bintoolsFor.strip.targetPrefix}strip" + export LD="${toolPath "ld${lib.optionalString useLdGold ".gold"}" targetCC}" + export AS="${toolPath "as" targetCC}" + export AR="${toolPath "ar" targetCC}" + export NM="${toolPath "nm" targetCC}" + export RANLIB="${toolPath "ranlib" targetCC}" + export READELF="${toolPath "readelf" targetCC}" + export STRIP="${toolPath "strip" targetCC}" '' + lib.optionalString (stdenv.targetPlatform.linker == "cctools") '' - export OTOOL="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}otool" - export INSTALL_NAME_TOOL="${bintoolsFor.install_name_tool}/bin/${bintoolsFor.install_name_tool.targetPrefix}install_name_tool" + export OTOOL="${toolPath "otool" targetCC}" + export INSTALL_NAME_TOOL="${toolPath "install_name_tool" targetCC}" '' + lib.optionalString useLLVM '' export LLC="${lib.getBin buildTargetLlvmPackages.llvm}/bin/llc" export OPT="${lib.getBin buildTargetLlvmPackages.llvm}/bin/opt" diff --git a/pkgs/development/compilers/ghc/9.4.8.fixme.nix b/pkgs/development/compilers/ghc/9.4.8.nix index a98d7404b7acf..a98d7404b7acf 100644 --- a/pkgs/development/compilers/ghc/9.4.8.fixme.nix +++ b/pkgs/development/compilers/ghc/9.4.8.nix diff --git a/pkgs/development/compilers/ghc/common-hadrian.nix b/pkgs/development/compilers/ghc/common-hadrian.nix index fcb5d43de7c0d..b5fef30332f7f 100644 --- a/pkgs/development/compilers/ghc/common-hadrian.nix +++ b/pkgs/development/compilers/ghc/common-hadrian.nix @@ -13,6 +13,7 @@ , pkgsBuildTarget , pkgsHostTarget , targetPackages +, fetchpatch # build-tools , bootPkgs @@ -170,6 +171,13 @@ then ./docs-sphinx-7-ghc98.patch else ./docs-sphinx-7.patch ) ] + ++ lib.optionals (lib.versionAtLeast version "9.6" && lib.versionOlder version "9.8") [ + (fetchpatch { + name = "fix-fully_static.patch"; + url = "https://gitlab.haskell.org/ghc/ghc/-/commit/1bb24432ff77e11a0340a7d8586e151e15bba2a1.diff"; + hash = "sha256-MpvTmFFsNiPDoOp9BhZyWeapeibQ77zgEV+xzZ1UAXs="; + }) + ] ++ lib.optionals (stdenv.targetPlatform.isDarwin && stdenv.targetPlatform.isAarch64) [ # Prevent the paths module from emitting symbols that we don't use # when building with separate outputs. @@ -259,23 +267,44 @@ let targetCC = builtins.head toolsForTarget; - # Sometimes we have to dispatch between the bintools wrapper and the unwrapped - # derivation for certain tools depending on the platform. - bintoolsFor = { - # GHC needs install_name_tool on all darwin platforms. On aarch64-darwin it is - # part of the bintools wrapper (due to codesigning requirements), but not on - # x86_64-darwin. - install_name_tool = - if stdenv.targetPlatform.isAarch64 - then targetCC.bintools - else targetCC.bintools.bintools; - # Same goes for strip. - strip = - # TODO(@sternenseemann): also use wrapper if linker == "bfd" or "gold" - if stdenv.targetPlatform.isAarch64 && stdenv.targetPlatform.isDarwin - then targetCC.bintools - else targetCC.bintools.bintools; - }; + # toolPath calculates the absolute path to the name tool associated with a + # given `stdenv.cc` derivation, i.e. it picks the correct derivation to take + # the tool from (cc, cc.bintools, cc.bintools.bintools) and adds the correct + # subpath of the tool. + toolPath = name: cc: + let + tools = { + "cc" = cc; + "c++" = cc; + as = cc.bintools.bintools; + + ar = cc.bintools.bintools; + ranlib = cc.bintools.bintools; + nm = cc.bintools.bintools; + readelf = cc.bintools.bintools; + + ld = cc.bintools; + "ld.gold" = cc.bintools; + + otool = cc.bintools.bintools; + + # GHC needs install_name_tool on all darwin platforms. On aarch64-darwin it is + # part of the bintools wrapper (due to codesigning requirements), but not on + # x86_64-darwin. We decide based on target platform to have consistent tools + # across all GHC stages. + install_name_tool = + if stdenv.targetPlatform.isAarch64 + then cc.bintools + else cc.bintools.bintools; + # Same goes for strip. + strip = + # TODO(@sternenseemann): also use wrapper if linker == "bfd" or "gold" + if stdenv.targetPlatform.isAarch64 && stdenv.targetPlatform.isDarwin + then cc.bintools + else cc.bintools.bintools; + }.${name}; + in + "${tools}/bin/${tools.targetPrefix}${name}"; # Use gold either following the default, or to avoid the BFD linker due to some bugs / perf issues. # But we cannot avoid BFD when using musl libc due to https://sourceware.org/bugzilla/show_bug.cgi?id=23856 @@ -321,19 +350,19 @@ stdenv.mkDerivation ({ done # GHC is a bit confused on its cross terminology, as these would normally be # the *host* tools. - export CC="${targetCC}/bin/${targetCC.targetPrefix}cc" - export CXX="${targetCC}/bin/${targetCC.targetPrefix}c++" + export CC="${toolPath "cc" targetCC}" + export CXX="${toolPath "c++" targetCC}" # Use gold to work around https://sourceware.org/bugzilla/show_bug.cgi?id=16177 - export LD="${targetCC.bintools}/bin/${targetCC.bintools.targetPrefix}ld${lib.optionalString useLdGold ".gold"}" - export AS="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}as" - export AR="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}ar" - export NM="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}nm" - export RANLIB="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}ranlib" - export READELF="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}readelf" - export STRIP="${bintoolsFor.strip}/bin/${bintoolsFor.strip.targetPrefix}strip" + export LD="${toolPath "ld${lib.optionalString useLdGold ".gold"}" targetCC}" + export AS="${toolPath "as" targetCC}" + export AR="${toolPath "ar" targetCC}" + export NM="${toolPath "nm" targetCC}" + export RANLIB="${toolPath "ranlib" targetCC}" + export READELF="${toolPath "readelf" targetCC}" + export STRIP="${toolPath "strip" targetCC}" '' + lib.optionalString (stdenv.targetPlatform.linker == "cctools") '' - export OTOOL="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}otool" - export INSTALL_NAME_TOOL="${bintoolsFor.install_name_tool}/bin/${bintoolsFor.install_name_tool.targetPrefix}install_name_tool" + export OTOOL="${toolPath "otool" targetCC}" + export INSTALL_NAME_TOOL="${toolPath "install_name_tool" targetCC}" '' + lib.optionalString useLLVM '' export LLC="${lib.getBin buildTargetLlvmPackages.llvm}/bin/llc" export OPT="${lib.getBin buildTargetLlvmPackages.llvm}/bin/opt" @@ -555,10 +584,6 @@ stdenv.mkDerivation ({ ] ++ lib.teams.haskell.members; timeout = 24 * 3600; inherit (ghc.meta) license platforms; - # https://github.com/NixOS/nixpkgs/issues/208959 - broken = - (lib.versionAtLeast version "9.6" && lib.versionOlder version "9.8") - && stdenv.targetPlatform.isStatic; }; dontStrip = targetPlatform.useAndroidPrebuilt || targetPlatform.isWasm; diff --git a/pkgs/development/compilers/ghc/common-make-native-bignum.nix b/pkgs/development/compilers/ghc/common-make-native-bignum.nix index 6142c76f64078..79fced444f562 100644 --- a/pkgs/development/compilers/ghc/common-make-native-bignum.nix +++ b/pkgs/development/compilers/ghc/common-make-native-bignum.nix @@ -136,23 +136,44 @@ let targetCC = builtins.head toolsForTarget; - # Sometimes we have to dispatch between the bintools wrapper and the unwrapped - # derivation for certain tools depending on the platform. - bintoolsFor = { - # GHC needs install_name_tool on all darwin platforms. On aarch64-darwin it is - # part of the bintools wrapper (due to codesigning requirements), but not on - # x86_64-darwin. - install_name_tool = - if stdenv.targetPlatform.isAarch64 - then targetCC.bintools - else targetCC.bintools.bintools; - # Same goes for strip. - strip = - # TODO(@sternenseemann): also use wrapper if linker == "bfd" or "gold" - if stdenv.targetPlatform.isAarch64 && stdenv.targetPlatform.isDarwin - then targetCC.bintools - else targetCC.bintools.bintools; - }; + # toolPath calculates the absolute path to the name tool associated with a + # given `stdenv.cc` derivation, i.e. it picks the correct derivation to take + # the tool from (cc, cc.bintools, cc.bintools.bintools) and adds the correct + # subpath of the tool. + toolPath = name: cc: + let + tools = { + "cc" = cc; + "c++" = cc; + as = cc.bintools.bintools; + + ar = cc.bintools.bintools; + ranlib = cc.bintools.bintools; + nm = cc.bintools.bintools; + readelf = cc.bintools.bintools; + + ld = cc.bintools; + "ld.gold" = cc.bintools; + + otool = cc.bintools.bintools; + + # GHC needs install_name_tool on all darwin platforms. On aarch64-darwin it is + # part of the bintools wrapper (due to codesigning requirements), but not on + # x86_64-darwin. We decide based on target platform to have consistent tools + # across all GHC stages. + install_name_tool = + if stdenv.targetPlatform.isAarch64 + then cc.bintools + else cc.bintools.bintools; + # Same goes for strip. + strip = + # TODO(@sternenseemann): also use wrapper if linker == "bfd" or "gold" + if stdenv.targetPlatform.isAarch64 && stdenv.targetPlatform.isDarwin + then cc.bintools + else cc.bintools.bintools; + }.${name}; + in + "${tools}/bin/${tools.targetPrefix}${name}"; # Use gold either following the default, or to avoid the BFD linker due to some bugs / perf issues. # But we cannot avoid BFD when using musl libc due to https://sourceware.org/bugzilla/show_bug.cgi?id=23856 @@ -265,19 +286,19 @@ stdenv.mkDerivation (rec { done # GHC is a bit confused on its cross terminology, as these would normally be # the *host* tools. - export CC="${targetCC}/bin/${targetCC.targetPrefix}cc" - export CXX="${targetCC}/bin/${targetCC.targetPrefix}c++" + export CC="${toolPath "cc" targetCC}" + export CXX="${toolPath "c++" targetCC}" # Use gold to work around https://sourceware.org/bugzilla/show_bug.cgi?id=16177 - export LD="${targetCC.bintools}/bin/${targetCC.bintools.targetPrefix}ld${lib.optionalString useLdGold ".gold"}" - export AS="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}as" - export AR="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}ar" - export NM="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}nm" - export RANLIB="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}ranlib" - export READELF="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}readelf" - export STRIP="${bintoolsFor.strip}/bin/${bintoolsFor.strip.targetPrefix}strip" + export LD="${toolPath "ld${lib.optionalString useLdGold ".gold"}" targetCC}" + export AS="${toolPath "as" targetCC}" + export AR="${toolPath "ar" targetCC}" + export NM="${toolPath "nm" targetCC}" + export RANLIB="${toolPath "ranlib" targetCC}" + export READELF="${toolPath "readelf" targetCC}" + export STRIP="${toolPath "strip" targetCC}" '' + lib.optionalString (stdenv.targetPlatform.linker == "cctools") '' - export OTOOL="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}otool" - export INSTALL_NAME_TOOL="${bintoolsFor.install_name_tool}/bin/${bintoolsFor.install_name_tool.targetPrefix}install_name_tool" + export OTOOL="${toolPath "otool" targetCC}" + export INSTALL_NAME_TOOL="${toolPath "install_name_tool" targetCC}" '' + lib.optionalString useLLVM '' export LLC="${lib.getBin buildTargetLlvmPackages.llvm}/bin/llc" export OPT="${lib.getBin buildTargetLlvmPackages.llvm}/bin/opt" diff --git a/pkgs/development/compilers/jetbrains-jdk/17.nix b/pkgs/development/compilers/jetbrains-jdk/17.nix new file mode 100644 index 0000000000000..76d4079baafbf --- /dev/null +++ b/pkgs/development/compilers/jetbrains-jdk/17.nix @@ -0,0 +1,156 @@ +{ lib +, stdenv +, fetchFromGitHub +, jetbrains +, openjdk17 +, openjdk17-bootstrap +, git +, autoconf +, unzip +, rsync +, debugBuild ? false +, withJcef ? true + +, libXdamage +, libXxf86vm +, libXrandr +, libXi +, libXcursor +, libXrender +, libX11 +, libXext +, libxcb +, nss +, nspr +, libdrm +, mesa +, wayland +, udev +}: + +assert debugBuild -> withJcef; + +let + arch = { + "aarch64-linux" = "aarch64"; + "x86_64-linux" = "x64"; + }.${stdenv.hostPlatform.system} or (throw "Unsupported system: ${stdenv.hostPlatform.system}"); + cpu = stdenv.hostPlatform.parsed.cpu.name; +in +openjdk17.overrideAttrs (oldAttrs: rec { + pname = "jetbrains-jdk" + lib.optionalString withJcef "-jcef"; + javaVersion = "17.0.11"; + build = "1207.24"; + # To get the new tag: + # git clone https://github.com/jetbrains/jetbrainsruntime + # cd jetbrainsruntime + # git reset --hard [revision] + # git log --simplify-by-decoration --decorate=short --pretty=short | grep "jbr-" --color=never | cut -d "(" -f2 | cut -d ")" -f1 | awk '{print $2}' | sort -t "-" -k 2 -g | tail -n 1 | tr -d "," + openjdkTag = "jbr-17.0.8+7"; + version = "${javaVersion}-b${build}"; + + src = fetchFromGitHub { + owner = "JetBrains"; + repo = "JetBrainsRuntime"; + rev = "jb${version}"; + hash = "sha256-a7cJF2iCW/1GK0/GmVbaY5pYcn3YtZy5ngFkyAGRhu0="; + }; + + BOOT_JDK = openjdk17-bootstrap.home; + # run `git log -1 --pretty=%ct` in jdk repo for new value on update + SOURCE_DATE_EPOCH = 1715809405; + + patches = [ ]; + + dontConfigure = true; + + buildPhase = '' + runHook preBuild + + ${lib.optionalString withJcef "cp -r ${jetbrains.jcef} jcef_linux_${arch}"} + + sed \ + -e "s/OPENJDK_TAG=.*/OPENJDK_TAG=${openjdkTag}/" \ + -e "s/SOURCE_DATE_EPOCH=.*//" \ + -e "s/export SOURCE_DATE_EPOCH//" \ + -i jb/project/tools/common/scripts/common.sh + sed -i "s/STATIC_CONF_ARGS/STATIC_CONF_ARGS \$configureFlags/" jb/project/tools/linux/scripts/mkimages_${arch}.sh + sed \ + -e "s/create_image_bundle \"jb/#/" \ + -e "s/echo Creating /exit 0 #/" \ + -i jb/project/tools/linux/scripts/mkimages_${arch}.sh + + patchShebangs . + ./jb/project/tools/linux/scripts/mkimages_${arch}.sh ${build} ${if debugBuild then "fd" else (if withJcef then "jcef" else "nomod")} + + runHook postBuild + ''; + + installPhase = + let + buildType = if debugBuild then "fastdebug" else "release"; + debugSuffix = if debugBuild then "-fastdebug" else ""; + jcefSuffix = if debugBuild || !withJcef then "" else "_jcef"; + jbrsdkDir = "jbrsdk${jcefSuffix}-${javaVersion}-linux-${arch}${debugSuffix}-b${build}"; + in + '' + runHook preInstall + + mv build/linux-${cpu}-server-${buildType}/images/jdk/man build/linux-${cpu}-server-${buildType}/images/${jbrsdkDir} + rm -rf build/linux-${cpu}-server-${buildType}/images/jdk + mv build/linux-${cpu}-server-${buildType}/images/${jbrsdkDir} build/linux-${cpu}-server-${buildType}/images/jdk + '' + oldAttrs.installPhase + "runHook postInstall"; + + postInstall = lib.optionalString withJcef '' + chmod +x $out/lib/openjdk/lib/chrome-sandbox + ''; + + dontStrip = debugBuild; + + postFixup = '' + # Build the set of output library directories to rpath against + LIBDIRS="${lib.makeLibraryPath [ + libXdamage libXxf86vm libXrandr libXi libXcursor libXrender libX11 libXext libxcb + nss nspr libdrm mesa wayland udev + ]}" + for output in $outputs; do + if [ "$output" = debug ]; then continue; fi + LIBDIRS="$(find $(eval echo \$$output) -name \*.so\* -exec dirname {} \+ | sort -u | tr '\n' ':'):$LIBDIRS" + done + # Add the local library paths to remove dependencies on the bootstrap + for output in $outputs; do + if [ "$output" = debug ]; then continue; fi + OUTPUTDIR=$(eval echo \$$output) + BINLIBS=$(find $OUTPUTDIR/bin/ -type f; find $OUTPUTDIR -name \*.so\*) + echo "$BINLIBS" | while read i; do + patchelf --set-rpath "$LIBDIRS:$(patchelf --print-rpath "$i")" "$i" || true + patchelf --shrink-rpath "$i" || true + done + done + ''; + + nativeBuildInputs = [ git autoconf unzip rsync ] ++ oldAttrs.nativeBuildInputs; + + meta = with lib; { + description = "An OpenJDK fork to better support Jetbrains's products."; + longDescription = '' + JetBrains Runtime is a runtime environment for running IntelliJ Platform + based products on Windows, Mac OS X, and Linux. JetBrains Runtime is + based on OpenJDK project with some modifications. These modifications + include: Subpixel Anti-Aliasing, enhanced font rendering on Linux, HiDPI + support, ligatures, some fixes for native crashes not presented in + official build, and other small enhancements. + JetBrains Runtime is not a certified build of OpenJDK. Please, use at + your own risk. + ''; + homepage = "https://confluence.jetbrains.com/display/JBR/JetBrains+Runtime"; + inherit (openjdk17.meta) license platforms mainProgram; + maintainers = with maintainers; [ edwtjo ]; + + broken = stdenv.isDarwin; + }; + + passthru = oldAttrs.passthru // { + home = "${jetbrains.jdk}/lib/openjdk"; + }; +}) diff --git a/pkgs/development/compilers/llvm/12/default.nix b/pkgs/development/compilers/llvm/12/default.nix index d3b823215c52f..0e498aa303565 100644 --- a/pkgs/development/compilers/llvm/12/default.nix +++ b/pkgs/development/compilers/llvm/12/default.nix @@ -1,7 +1,7 @@ -{ lowPrio, newScope, pkgs, lib, stdenv, cmake +{ lowPrio, newScope, pkgs, lib, stdenv , preLibcCrossHeaders -, substitute, substituteAll, fetchFromGitHub, fetchpatch -, libxml2, python3, isl, fetchurl, overrideCC, wrapCCWith, wrapBintoolsWith +, substitute, substituteAll, fetchFromGitHub, fetchpatch, fetchurl +, overrideCC, wrapCCWith, wrapBintoolsWith , buildLlvmTools # tools, but from the previous stage, for cross , targetLlvmLibraries # libraries, but from the next stage, for cross , targetLlvm @@ -17,6 +17,10 @@ then null else pkgs.bintools , darwin +# Allows passthrough to packages via newScope. This makes it possible to +# do `(llvmPackages.override { <someLlvmDependency> = bar; }).clang` and get +# an llvmPackages whose packages are overridden in an internally consistent way. +, ... }@args: let diff --git a/pkgs/development/compilers/llvm/13/default.nix b/pkgs/development/compilers/llvm/13/default.nix index 0b231a91512b8..22bdc6140ab30 100644 --- a/pkgs/development/compilers/llvm/13/default.nix +++ b/pkgs/development/compilers/llvm/13/default.nix @@ -1,7 +1,7 @@ -{ lowPrio, newScope, pkgs, lib, stdenv, cmake +{ lowPrio, newScope, pkgs, lib, stdenv , preLibcCrossHeaders -, fetchpatch -, libxml2, python3, isl, fetchFromGitHub, substitute, substituteAll, overrideCC, wrapCCWith, wrapBintoolsWith +, substitute, substituteAll, fetchFromGitHub, fetchpatch +, overrideCC, wrapCCWith, wrapBintoolsWith , buildLlvmTools # tools, but from the previous stage, for cross , targetLlvmLibraries # libraries, but from the next stage, for cross , targetLlvm @@ -40,7 +40,10 @@ # to you to make sure that the LLVM repo given matches the release configuration # specified. , monorepoSrc ? null - +# Allows passthrough to packages via newScope. This makes it possible to +# do `(llvmPackages.override { <someLlvmDependency> = bar; }).clang` and get +# an llvmPackages whose packages are overridden in an internally consistent way. +, ... }@args: assert diff --git a/pkgs/development/compilers/llvm/14/default.nix b/pkgs/development/compilers/llvm/14/default.nix index a80b3aa4ffff7..22fd8223c8f27 100644 --- a/pkgs/development/compilers/llvm/14/default.nix +++ b/pkgs/development/compilers/llvm/14/default.nix @@ -1,6 +1,7 @@ -{ lowPrio, newScope, pkgs, lib, stdenv, cmake +{ lowPrio, newScope, pkgs, lib, stdenv , preLibcCrossHeaders -, libxml2, python3, fetchFromGitHub, substitute, substituteAll, fetchpatch, overrideCC, wrapCCWith, wrapBintoolsWith +, substitute, substituteAll, fetchFromGitHub, fetchpatch +, overrideCC, wrapCCWith, wrapBintoolsWith , buildLlvmTools # tools, but from the previous stage, for cross , targetLlvmLibraries # libraries, but from the next stage, for cross , targetLlvm @@ -39,6 +40,10 @@ # to you to make sure that the LLVM repo given matches the release configuration # specified. , monorepoSrc ? null +# Allows passthrough to packages via newScope. This makes it possible to +# do `(llvmPackages.override { <someLlvmDependency> = bar; }).clang` and get +# an llvmPackages whose packages are overridden in an internally consistent way. +, ... }@args: assert diff --git a/pkgs/development/compilers/llvm/15/default.nix b/pkgs/development/compilers/llvm/15/default.nix index e30e9f9a59db7..b3d2d9c3de48c 100644 --- a/pkgs/development/compilers/llvm/15/default.nix +++ b/pkgs/development/compilers/llvm/15/default.nix @@ -1,6 +1,7 @@ -{ lowPrio, newScope, pkgs, lib, stdenv, cmake, ninja +{ lowPrio, newScope, pkgs, lib, stdenv , preLibcCrossHeaders -, libxml2, python3, fetchFromGitHub, fetchpatch, substitute, substituteAll, overrideCC, wrapCCWith, wrapBintoolsWith +, substitute, substituteAll, fetchFromGitHub, fetchpatch +, overrideCC, wrapCCWith, wrapBintoolsWith , buildLlvmTools # tools, but from the previous stage, for cross , targetLlvmLibraries # libraries, but from the next stage, for cross , targetLlvm @@ -39,6 +40,10 @@ # to you to make sure that the LLVM repo given matches the release configuration # specified. , monorepoSrc ? null +# Allows passthrough to packages via newScope. This makes it possible to +# do `(llvmPackages.override { <someLlvmDependency> = bar; }).clang` and get +# an llvmPackages whose packages are overridden in an internally consistent way. +, ... }@args: assert diff --git a/pkgs/development/compilers/llvm/16/default.nix b/pkgs/development/compilers/llvm/16/default.nix index 426bcb4c46d88..521e1ed92e3ea 100644 --- a/pkgs/development/compilers/llvm/16/default.nix +++ b/pkgs/development/compilers/llvm/16/default.nix @@ -1,6 +1,7 @@ -{ lowPrio, newScope, pkgs, lib, stdenv, cmake, ninja +{ lowPrio, newScope, pkgs, lib, stdenv , preLibcCrossHeaders -, libxml2, python3, fetchFromGitHub, substituteAll, overrideCC, wrapCCWith, wrapBintoolsWith +, substitute, substituteAll, fetchFromGitHub +, overrideCC, wrapCCWith, wrapBintoolsWith , buildLlvmTools # tools, but from the previous stage, for cross , targetLlvmLibraries # libraries, but from the next stage, for cross , targetLlvm @@ -39,6 +40,10 @@ # to you to make sure that the LLVM repo given matches the release configuration # specified. , monorepoSrc ? null +# Allows passthrough to packages via newScope. This makes it possible to +# do `(llvmPackages.override { <someLlvmDependency> = bar; }).clang` and get +# an llvmPackages whose packages are overridden in an internally consistent way. +, ... }@args: assert diff --git a/pkgs/development/compilers/llvm/17/default.nix b/pkgs/development/compilers/llvm/17/default.nix index a6d7f48eb800c..af0d648c4fd01 100644 --- a/pkgs/development/compilers/llvm/17/default.nix +++ b/pkgs/development/compilers/llvm/17/default.nix @@ -1,6 +1,7 @@ -{ lowPrio, newScope, pkgs, lib, stdenv, cmake, ninja +{ lowPrio, newScope, pkgs, lib, stdenv , preLibcCrossHeaders -, libxml2, python3, fetchFromGitHub, fetchpatch, substituteAll, overrideCC, wrapCCWith, wrapBintoolsWith +, substitute, substituteAll, fetchFromGitHub, fetchpatch +, overrideCC, wrapCCWith, wrapBintoolsWith , buildLlvmTools # tools, but from the previous stage, for cross , targetLlvmLibraries # libraries, but from the next stage, for cross , targetLlvm @@ -39,6 +40,10 @@ # to you to make sure that the LLVM repo given matches the release configuration # specified. , monorepoSrc ? null +# Allows passthrough to packages via newScope. This makes it possible to +# do `(llvmPackages.override { <someLlvmDependency> = bar; }).clang` and get +# an llvmPackages whose packages are overridden in an internally consistent way. +, ... }@args: assert diff --git a/pkgs/development/compilers/llvm/18/default.nix b/pkgs/development/compilers/llvm/18/default.nix index d62ae9c820b21..4ef9728708385 100644 --- a/pkgs/development/compilers/llvm/18/default.nix +++ b/pkgs/development/compilers/llvm/18/default.nix @@ -1,6 +1,7 @@ -{ lowPrio, newScope, pkgs, lib, stdenv, cmake, ninja +{ lowPrio, newScope, pkgs, lib, stdenv , preLibcCrossHeaders -, libxml2, python3, fetchFromGitHub, substituteAll, overrideCC, wrapCCWith, wrapBintoolsWith +, substitute, substituteAll, fetchFromGitHub +, overrideCC, wrapCCWith, wrapBintoolsWith , buildLlvmTools # tools, but from the previous stage, for cross , targetLlvmLibraries # libraries, but from the next stage, for cross , targetLlvm @@ -39,6 +40,10 @@ # to you to make sure that the LLVM repo given matches the release configuration # specified. , monorepoSrc ? null +# Allows passthrough to packages via newScope. This makes it possible to +# do `(llvmPackages.override { <someLlvmDependency> = bar; }).clang` and get +# an llvmPackages whose packages are overridden in an internally consistent way. +, ... }@args: assert diff --git a/pkgs/development/compilers/llvm/common/clang/default.nix b/pkgs/development/compilers/llvm/common/clang/default.nix index e597ec4d604b1..dc175e085f0b6 100644 --- a/pkgs/development/compilers/llvm/common/clang/default.nix +++ b/pkgs/development/compilers/llvm/common/clang/default.nix @@ -198,7 +198,7 @@ let ''; }) // (lib.optionalAttrs (lib.versionAtLeast release_version "15") { - env = lib.optionalAttrs (stdenv.buildPlatform != stdenv.hostPlatform) { + env = lib.optionalAttrs (stdenv.buildPlatform != stdenv.hostPlatform && !stdenv.hostPlatform.useLLVM) { # The following warning is triggered with (at least) gcc >= # 12, but appears to occur only for cross compiles. NIX_CFLAGS_COMPILE = "-Wno-maybe-uninitialized"; diff --git a/pkgs/development/compilers/llvm/git/default.nix b/pkgs/development/compilers/llvm/git/default.nix index 464c405dc0606..0e3a0eb7c6967 100644 --- a/pkgs/development/compilers/llvm/git/default.nix +++ b/pkgs/development/compilers/llvm/git/default.nix @@ -1,6 +1,7 @@ -{ lowPrio, newScope, pkgs, lib, stdenv, cmake, ninja +{ lowPrio, newScope, pkgs, lib, stdenv , preLibcCrossHeaders -, libxml2, python3, fetchFromGitHub, substituteAll, overrideCC, wrapCCWith, wrapBintoolsWith +, substitute, substituteAll, fetchFromGitHub, fetchpatch +, overrideCC, wrapCCWith, wrapBintoolsWith , buildLlvmTools # tools, but from the previous stage, for cross , targetLlvmLibraries # libraries, but from the next stage, for cross , targetLlvm @@ -44,6 +45,10 @@ # to you to make sure that the LLVM repo given matches the release configuration # specified. , monorepoSrc ? null +# Allows passthrough to packages via newScope. This makes it possible to +# do `(llvmPackages.override { <someLlvmDependency> = bar; }).clang` and get +# an llvmPackages whose packages are overridden in an internally consistent way. +, ... }@args: assert diff --git a/pkgs/development/compilers/sbcl/default.nix b/pkgs/development/compilers/sbcl/default.nix index 0eec40b2bd4c7..a2b5cf46b54d6 100644 --- a/pkgs/development/compilers/sbcl/default.nix +++ b/pkgs/development/compilers/sbcl/default.nix @@ -1,13 +1,4 @@ { lib, stdenv, callPackage, ecl, coreutils, fetchurl, strace, texinfo, which, writeText, zstd -, threadSupport ? (stdenv.hostPlatform.isx86 || "aarch64-linux" == stdenv.hostPlatform.system || "aarch64-darwin" == stdenv.hostPlatform.system) -, linkableRuntime ? stdenv.hostPlatform.isx86 -, disableImmobileSpace ? false - # Meant for sbcl used for creating binaries portable to non-NixOS via save-lisp-and-die. - # Note that the created binaries still need `patchelf --set-interpreter ...` - # to get rid of ${glibc} dependency. -, purgeNixReferences ? false -, coreCompression ? true -, markRegionGC ? threadSupport , version # Set this to a lisp binary to use a custom bootstrap lisp compiler for SBCL. # Leave as null to use the default. This is useful for local development of @@ -65,12 +56,14 @@ let in -stdenv.mkDerivation (self: rec { +stdenv.mkDerivation (self: { pname = "sbcl"; inherit version; src = fetchurl { - url = "mirror://sourceforge/project/sbcl/sbcl/${version}/${pname}-${version}-source.tar.bz2"; + # Changing the version shouldn’t change the source for the + # derivation. Override the src entirely if desired. + url = "mirror://sourceforge/project/sbcl/sbcl/${version}/sbcl-${version}-source.tar.bz2"; inherit (versionMap.${version}) sha256; }; @@ -83,15 +76,25 @@ stdenv.mkDerivation (self: rec { strace ] ); - buildInputs = lib.optionals coreCompression ( + buildInputs = lib.optionals self.coreCompression ( # Declare at the point of actual use in case the caller wants to override # buildInputs to sidestep this. - assert lib.assertMsg (!purgeNixReferences) '' + assert lib.assertMsg (!self.purgeNixReferences) '' Cannot enable coreCompression when purging Nix references, because compression requires linking in zstd ''; [ zstd ] ); + threadSupport = (stdenv.hostPlatform.isx86 || "aarch64-linux" == stdenv.hostPlatform.system || "aarch64-darwin" == stdenv.hostPlatform.system); + # Meant for sbcl used for creating binaries portable to non-NixOS via save-lisp-and-die. + # Note that the created binaries still need `patchelf --set-interpreter ...` + # to get rid of ${glibc} dependency. + purgeNixReferences = false; + coreCompression = true; + markRegionGC = self.threadSupport; + disableImmobileSpace = false; + linkableRuntime = stdenv.hostPlatform.isx86; + # I don’t know why these are failing (on ofBorg), and I’d rather just disable # them and move forward with the succeeding tests than block testing # altogether. One by one hopefully we can fix these (on ofBorg, @@ -125,7 +128,7 @@ stdenv.mkDerivation (self: rec { postPatch = lib.optionalString (self.disabledTestFiles != [ ]) '' (cd tests ; rm -f ${lib.concatStringsSep " " self.disabledTestFiles}) '' - + lib.optionalString purgeNixReferences '' + + lib.optionalString self.purgeNixReferences '' # This is the default location to look for the core; by default in $out/lib/sbcl sed 's@^\(#define SBCL_HOME\) .*$@\1 "/no-such-path"@' \ -i src/runtime/runtime.c @@ -137,7 +140,7 @@ stdenv.mkDerivation (self: rec { # binary. There are some tricky files in nested directories which should # definitely NOT be patched this way, hence just a single * (and no # globstar). - substituteInPlace ${if purgeNixReferences then "tests" else "{tests,src/code}"}/*.{lisp,sh} \ + substituteInPlace ${if self.purgeNixReferences then "tests" else "{tests,src/code}"}/*.{lisp,sh} \ --replace-quiet /usr/bin/env "${coreutils}/bin/env" \ --replace-quiet /bin/uname "${coreutils}/bin/uname" \ --replace-quiet /bin/sh "${stdenv.shell}" @@ -146,7 +149,7 @@ stdenv.mkDerivation (self: rec { # want to override { src = ... } it might not exist. It’s required for # building, so create a mock version as a backup. if [[ ! -a version.lisp-expr ]]; then - echo '"${version}.nixos"' > version.lisp-expr + echo '"${self.version}.nixos"' > version.lisp-expr fi ''; @@ -157,16 +160,16 @@ stdenv.mkDerivation (self: rec { ''; enableFeatures = with lib; - assert assertMsg (markRegionGC -> threadSupport) "SBCL mark region GC requires thread support"; - optional threadSupport "sb-thread" ++ - optional linkableRuntime "sb-linkable-runtime" ++ - optional coreCompression "sb-core-compression" ++ + assert assertMsg (self.markRegionGC -> self.threadSupport) "SBCL mark region GC requires thread support"; + optional self.threadSupport "sb-thread" ++ + optional self.linkableRuntime "sb-linkable-runtime" ++ + optional self.coreCompression "sb-core-compression" ++ optional stdenv.isAarch32 "arm" ++ - optional markRegionGC "mark-region-gc"; + optional self.markRegionGC "mark-region-gc"; disableFeatures = with lib; - optional (!threadSupport) "sb-thread" ++ - optionals disableImmobileSpace [ "immobile-space" "immobile-code" "compact-instance-header" ]; + optional (!self.threadSupport) "sb-thread" ++ + optionals self.disableImmobileSpace [ "immobile-space" "immobile-code" "compact-instance-header" ]; buildArgs = [ "--prefix=$out" @@ -210,7 +213,7 @@ stdenv.mkDerivation (self: rec { INSTALL_ROOT=$out sh install.sh '' - + lib.optionalString (!purgeNixReferences) '' + + lib.optionalString (!self.purgeNixReferences) '' cp -r src $out/lib/sbcl cp -r contrib $out/lib/sbcl cat >$out/lib/sbcl/sbclrc <<EOF @@ -222,7 +225,7 @@ stdenv.mkDerivation (self: rec { runHook postInstall ''; - setupHook = lib.optional purgeNixReferences (writeText "setupHook.sh" '' + setupHook = lib.optional self.purgeNixReferences (writeText "setupHook.sh" '' addEnvHooks "$targetOffset" _setSbclHome _setSbclHome() { export SBCL_HOME='@out@/lib/sbcl/' diff --git a/pkgs/development/compilers/typescript/default.nix b/pkgs/development/compilers/typescript/default.nix index 39ccc78ff3b50..4eca8e576c2cf 100644 --- a/pkgs/development/compilers/typescript/default.nix +++ b/pkgs/development/compilers/typescript/default.nix @@ -2,20 +2,20 @@ buildNpmPackage rec { pname = "typescript"; - version = "5.4.5"; + version = "5.5.2"; src = fetchFromGitHub { owner = "microsoft"; repo = "TypeScript"; rev = "v${version}"; - hash = "sha256-W2ulYb06K4VSlFTYOmXTBHrjWXnQdDGzkwBxvl+QJWo="; + hash = "sha256-2BgMzOW9DIIncujAVJ/C8L9aMwDkNaj47cV2JSxCPrw="; }; patches = [ ./disable-dprint-dstBundler.patch ]; - npmDepsHash = "sha256-T0WfJaSVzwbNbTL1AiuzMUW/3MKMOZo14v4Ut9Iqxas="; + npmDepsHash = "sha256-/WQgSoklW1szgJ/5iN0Dg+L7BMByvyc+KcvYiQNjGEw="; passthru.tests = { version = testers.testVersion { diff --git a/pkgs/development/compilers/zig/0.12/default.nix b/pkgs/development/compilers/zig/0.12/default.nix index 092b416c7903e..88bb0169dd8a6 100644 --- a/pkgs/development/compilers/zig/0.12/default.nix +++ b/pkgs/development/compilers/zig/0.12/default.nix @@ -38,6 +38,16 @@ stdenv.mkDerivation (finalAttrs: { llvm ]); + # On Darwin, Zig calls std.zig.system.darwin.macos.detect during the build, + # which parses /System/Library/CoreServices/SystemVersion.plist and + # /System/Library/CoreServices/.SystemVersionPlatform.plist to determine the + # OS version. This causes the build to fail during stage 3 with + # OSVersionDetectionFail when the sandbox is enabled. + __impureHostDeps = lib.optionals stdenv.isDarwin [ + "/System/Library/CoreServices/.SystemVersionPlatform.plist" + "/System/Library/CoreServices/SystemVersion.plist" + ]; + outputs = [ "out" "doc" diff --git a/pkgs/development/compilers/zig/0.13/default.nix b/pkgs/development/compilers/zig/0.13/default.nix index bdc01ba47f9ff..0c72b459facf8 100644 --- a/pkgs/development/compilers/zig/0.13/default.nix +++ b/pkgs/development/compilers/zig/0.13/default.nix @@ -38,6 +38,16 @@ stdenv.mkDerivation (finalAttrs: { llvm ]); + # On Darwin, Zig calls std.zig.system.darwin.macos.detect during the build, + # which parses /System/Library/CoreServices/SystemVersion.plist and + # /System/Library/CoreServices/.SystemVersionPlatform.plist to determine the + # OS version. This causes the build to fail during stage 3 with + # OSVersionDetectionFail when the sandbox is enabled. + __impureHostDeps = lib.optionals stdenv.isDarwin [ + "/System/Library/CoreServices/.SystemVersionPlatform.plist" + "/System/Library/CoreServices/SystemVersion.plist" + ]; + outputs = [ "out" "doc" diff --git a/pkgs/development/compilers/zig/generic.nix b/pkgs/development/compilers/zig/generic.nix index f3c725e1e5ce0..3369f5d40c2c1 100644 --- a/pkgs/development/compilers/zig/generic.nix +++ b/pkgs/development/compilers/zig/generic.nix @@ -36,6 +36,16 @@ stdenv.mkDerivation (finalAttrs: { llvm ]); + # On Darwin, Zig calls std.zig.system.darwin.macos.detect during the build, + # which parses /System/Library/CoreServices/SystemVersion.plist and + # /System/Library/CoreServices/.SystemVersionPlatform.plist to determine the + # OS version. This causes the build to fail during stage 3 with + # OSVersionDetectionFail when the sandbox is enabled. + __impureHostDeps = lib.optionals stdenv.isDarwin [ + "/System/Library/CoreServices/.SystemVersionPlatform.plist" + "/System/Library/CoreServices/SystemVersion.plist" + ]; + env.ZIG_GLOBAL_CACHE_DIR = "$TMPDIR/zig-cache"; # Zig's build looks at /usr/bin/env to find dynamic linking info. This doesn't diff --git a/pkgs/development/embedded/platformio/chrootenv.nix b/pkgs/development/embedded/platformio/chrootenv.nix index 6e99c78dfdfe7..50be791a951e7 100644 --- a/pkgs/development/embedded/platformio/chrootenv.nix +++ b/pkgs/development/embedded/platformio/chrootenv.nix @@ -11,6 +11,7 @@ let git xdg-user-dirs ncurses + udev ]) ++ (with python.pkgs; [ python setuptools diff --git a/pkgs/development/haskell-modules/configuration-common.nix b/pkgs/development/haskell-modules/configuration-common.nix index cefce06d8431d..e1efb46422a37 100644 --- a/pkgs/development/haskell-modules/configuration-common.nix +++ b/pkgs/development/haskell-modules/configuration-common.nix @@ -234,10 +234,16 @@ self: super: { fused-effects-random = doJailbreak super.fused-effects-random; fused-effects-readline = doJailbreak super.fused-effects-readline; - # fix tests failure for base≥4.15 (https://github.com/kim/leveldb-haskell/pull/41) - leveldb-haskell = appendPatch (fetchpatch { - url = "https://github.com/kim/leveldb-haskell/commit/f5249081f589233890ddb1945ec548ca9fb717cf.patch"; - sha256 = "14gllipl28lqry73c5dnclsskzk1bsrrgazibl4lkl8z98j2csjb"; + leveldb-haskell = overrideCabal (drv: { + version = "2024-05-05-unstable"; + # Fix tests on mtl ≥ 2.3 + # https://github.com/kim/leveldb-haskell/pull/42 + src = pkgs.fetchFromGitHub { + owner = "kim"; + repo = "leveldb-haskell"; + rev = "3a505f3a7de0f5d14463538d7c2c9a9881a60eb9"; + sha256 = "sha256-okUn5ZuWcj8vPr0GWXvO1LygNCrDfttkDaUoOt+FLA0="; + }; }) super.leveldb-haskell; # Arion's test suite needs a Nixpkgs, which is cumbersome to do from Nixpkgs @@ -268,12 +274,6 @@ self: super: { sha256 = "1c7knpvxr7p8c159jkyk6w29653z5yzgjjqj11130bbb8mk9qhq7"; }) super.c2hsc; - # Some Hackage packages reference this attribute, which exists only in the - # GHCJS package set. We provide a dummy version here to fix potential - # evaluation errors. - ghcjs-base = null; - ghcjs-prim = null; - ghc-debug-client = doJailbreak super.ghc-debug-client; # Test failure. Tests also disabled in Stackage: @@ -971,12 +971,12 @@ self: super: { # See https://github.com/valderman/selda/issues/187 inherit (let mkSeldaPackage = name: overrideCabal (drv: { - version = "2023-02-05-unstable"; + version = "2024-05-05-unstable"; src = pkgs.fetchFromGitHub { owner = "valderman"; repo = "selda"; - rev = "ab9619db13b93867d1a244441bb4de03d3e1dadb"; - hash = "sha256-P0nqAYzbeTyEEgzMij/3mKcs++/p/Wgc7Y6bDudXt2U="; + rev = "50c3ba5c5da72bb758a4112363ba2fe1c0e968ea"; + hash = "sha256-LEAJsSsDL0mmVHntnI16fH8m5DmePfcU0hFw9ErqTgQ="; } + "/${name}"; }) super.${name}; in @@ -1367,18 +1367,17 @@ self: super: { ''; }) super.PortMidi; - # Fix for base >= 4.11 scat = overrideCabal (drv: { patches = [ - # Fix build with base >= 4.11 + # Fix build with base >= 4.11 (https://github.com/redelmann/scat/pull/6) (fetchpatch { url = "https://github.com/redelmann/scat/commit/429f22944b7634b8789cb3805292bcc2b23e3e9f.diff"; hash = "sha256-FLr1KfBaSYzI6MiZIBY1CkgAb5sThvvgjrSAN8EV0h4="; }) - # Fix build with vector >= 0.13 + # Fix build with vector >= 0.13, mtl >= 2.3 (https://github.com/redelmann/scat/pull/8) (fetchpatch { - url = "https://github.com/redelmann/scat/commit/e21cc9c17b5b605b5bc0aacad66d44bbe0beb8c4.diff"; - hash = "sha256-MifHb2EKZx8skOcs+2t54CzxAS4PaEC0OTEfq4yVXzk="; + url = "https://github.com/redelmann/scat/compare/e8e064f7e6a152fe25a6ccd743573a16974239d0..c6a3636548d628f32d8edc73a333188ce24141a7.patch"; + hash = "sha256-BU4MUn/TnZHpZBlX1vDHE7QZva5yhlLTb8zwpx7UScI"; }) ]; }) super.scat; @@ -1561,13 +1560,36 @@ self: super: { doJailbreak ]; - jsaddle-dom = overrideCabal (old: { - postPatch = old.postPatch or "" + '' - rm Setup.hs - ''; - }) super.jsaddle-dom; - jsaddle-hello = doJailbreak super.jsaddle-hello; - ghcjs-dom-hello = doJailbreak super.ghcjs-dom-hello; + ghcjs-dom-hello = appendPatches [ + (fetchpatch { + url = "https://github.com/ghcjs/ghcjs-dom-hello/commit/53991df6a4eba9f1e9633eb22f6a0486a79491c3.patch"; + sha256 = "sha256-HQeUgjvzYyY14+CDYiMahAMn7fBcy2d7p8/kqGq+rnI="; + }) + (fetchpatch { + url = "https://github.com/ghcjs/ghcjs-dom-hello/commit/d766d937121f7ea5c4c154bd533a1eae47f531c9.patch"; + sha256 = "sha256-QTkH+L+JMwGyuoqzHBnrokT7KzpHC4YiAWoeiaFBLUw="; + }) + (fetchpatch { + url = "https://github.com/ghcjs/ghcjs-dom-hello/commit/831464d995f4033c9aa84f9ed9fb37a268f34d4e.patch"; + sha256 = "sha256-hQMy+78geTuxd3kbdiyYqoAFrauu90HbpPi0EEKjMzM="; + }) + ] super.ghcjs-dom-hello; + + # Needs https://github.com/ghcjs/jsaddle-hello/pull/5 and hackage release + jsaddle-hello = appendPatches [ + (fetchpatch { + url = "https://github.com/ghcjs/jsaddle-hello/commit/c4de837675117b821c50a5079d20d84ec16ff26a.patch"; + sha256 = "sha256-NsM7QqNLt5V8i5bveYgMrawGnZVsIuAoJfBF75jBwV0="; + }) + (fetchpatch { + url = "https://github.com/ghcjs/jsaddle-hello/commit/5c437363833684ea951ec74a0d0fdf5b6fbaca85.patch"; + sha256 = "sha256-CUyZsts0FAQ3c8Z+zfvwbmlAJCMcidV80n8dA/SoRls="; + }) + (fetchpatch { + url = "https://github.com/ghcjs/jsaddle-hello/commit/e2da9e266fbfa8f7fcf3009ab6cfbf825a8bcf7a.patch"; + sha256 = "sha256-WL0CcnlMt6KI7MOZMg74fNN/I4gYSO3n+GiaXB2BOP0="; + }) + ] super.jsaddle-hello; # Too strict upper bounds on text lsql-csv = doJailbreak super.lsql-csv; @@ -1691,6 +1713,14 @@ self: super: { # Test suite fails to compile https://github.com/agrafix/Spock/issues/177 Spock = dontCheck super.Spock; + Spock-core = appendPatches [ + (fetchpatch { + url = "https://github.com/agrafix/Spock/commit/d0b51fa60a83bfa5c1b5fc8fced18001e7321701.patch"; + sha256 = "sha256-l9voiczOOdYVBP/BNEUvqARb21t0Rp2kpsNbRFUWSLg="; + stripLen = 1; + }) + ] (doJailbreak super.Spock-core); + # https://github.com/strake/filtrable.hs/issues/6 filtrable = doJailbreak super.filtrable; @@ -2647,18 +2677,6 @@ self: super: { # https://github.com/ngless-toolkit/ngless/issues/152 NGLess = dontCheck super.NGLess; - # Raise version bounds: https://github.com/well-typed/lens-sop/pull/4 - lens-sop = appendPatches [ - (fetchpatch { - url = "https://github.com/well-typed/lens-sop/commit/d8657f27c12191a7c0a91701c0fcd9a590e0090e.patch"; - sha256 = "sha256-9ODfbOb6Bs3EVTY9b7cUvkNmqzzZPWUmgmlAneaN3Tw="; - }) - (fetchpatch { - url = "https://github.com/well-typed/lens-sop/commit/b7ecffdeb836d19373871659e2f8cd24da6f7312.patch"; - sha256 = "sha256-hDUQ2fW9Qyom65YvtW9bsbz7XtueRmdsAbAB42D+gu4="; - }) - ] super.lens-sop; - # Raise version bounds: https://github.com/kosmikus/records-sop/pull/15 records-sop = appendPatch (fetchpatch { url = "https://github.com/kosmikus/records-sop/commit/fb149f453a816ff14d0cb20b3ea56b80ff49d9f1.patch"; diff --git a/pkgs/development/haskell-modules/configuration-darwin.nix b/pkgs/development/haskell-modules/configuration-darwin.nix index 5985d29f8b591..16e5d2613fb2e 100644 --- a/pkgs/development/haskell-modules/configuration-darwin.nix +++ b/pkgs/development/haskell-modules/configuration-darwin.nix @@ -323,6 +323,20 @@ self: super: ({ # Tests fail on macOS https://github.com/mrkkrp/zip/issues/112 zip = dontCheck super.zip; + warp = super.warp.overrideAttrs (drv: { + __darwinAllowLocalNetworking = true; + }); + + ghcjs-dom-hello = overrideCabal (drv: { + libraryHaskellDepends = with self; [ jsaddle jsaddle-warp ]; + executableHaskellDepends = with self; [ ghcjs-dom jsaddle-wkwebview ]; + }) super.ghcjs-dom-hello; + + jsaddle-hello = overrideCabal (drv: { + libraryHaskellDepends = with self; [ jsaddle lens ]; + executableHaskellDepends = with self; [ jsaddle-warp jsaddle-wkwebview ]; + }) super.jsaddle-hello; + jsaddle-wkwebview = overrideCabal (drv: { libraryFrameworkDepends = with pkgs.buildPackages.darwin.apple_sdk.frameworks; [ Cocoa WebKit ]; libraryHaskellDepends = with self; [ aeson data-default jsaddle ]; # cabal2nix doesn't add darwin-only deps diff --git a/pkgs/development/haskell-modules/configuration-ghc-9.8.x.nix b/pkgs/development/haskell-modules/configuration-ghc-9.8.x.nix index ba0f6c31a216e..c8750bc22631d 100644 --- a/pkgs/development/haskell-modules/configuration-ghc-9.8.x.nix +++ b/pkgs/development/haskell-modules/configuration-ghc-9.8.x.nix @@ -68,6 +68,7 @@ self: super: { stylish-haskell = self.stylish-haskell_0_14_6_0; hlint = self.hlint_3_8; ghc-syntax-highlighter = self.ghc-syntax-highlighter_0_0_11_0; + websockets = self.websockets_0_13_0_0; # A given major version of ghc-exactprint only supports one version of GHC. ghc-exactprint = self.ghc-exactprint_1_8_0_0; @@ -131,8 +132,10 @@ self: super: { hip = appendConfigureFlag "--ghc-options=-fsimpl-tick-factor=200" super.hip; # Fix build with text-2.x. - libmpd = appendPatch (pkgs.fetchpatch - { url = "https://github.com/vimus/libmpd-haskell/pull/138.patch"; + libmpd = appendPatch + (pkgs.fetchpatch { + name = "138.patch"; # https://github.com/vimus/libmpd-haskell/pull/138 + url = "https://github.com/vimus/libmpd-haskell/compare/95d3b3bab5858d6d1f0e079d0ab7c2d182336acb...f1cbf247261641565a3937b90721f7955d254c5e.patch"; sha256 = "Q4fA2J/Tq+WernBo+UIMdj604ILOMlIYkG4Pr046DfM="; }) super.libmpd; diff --git a/pkgs/development/haskell-modules/configuration-ghcjs.nix b/pkgs/development/haskell-modules/configuration-ghcjs-8.x.nix index c74fdb09232c2..3f6e399f795b8 100644 --- a/pkgs/development/haskell-modules/configuration-ghcjs.nix +++ b/pkgs/development/haskell-modules/configuration-ghcjs-8.x.nix @@ -24,6 +24,11 @@ self: super: aeson = self.aeson_1_5_6_0; }); + # Included in ghcjs itself + ghcjs-prim = null; + + ghcjs-websockets = markUnbroken super.ghcjs-websockets; + # GHCJS does not ship with the same core packages as GHC. # https://github.com/ghcjs/ghcjs/issues/676 stm = doJailbreak self.stm_2_5_3_1; diff --git a/pkgs/development/haskell-modules/configuration-ghcjs-9.x.nix b/pkgs/development/haskell-modules/configuration-ghcjs-9.x.nix new file mode 100644 index 0000000000000..3b1f8dc4558e1 --- /dev/null +++ b/pkgs/development/haskell-modules/configuration-ghcjs-9.x.nix @@ -0,0 +1,22 @@ +{ pkgs, haskellLib }: + +with haskellLib; + +# cabal2nix doesn't properly add dependencies conditional on arch(javascript) +(self: super: { + ghcjs-base = addBuildDepends (with self; [ + aeson + attoparsec + dlist + hashable + primitive + scientific + unordered-containers + vector + ]) super.ghcjs-base; + + ghcjs-dom = addBuildDepend self.ghcjs-dom-javascript super.ghcjs-dom; + ghcjs-dom-javascript = addBuildDepend self.ghcjs-base super.ghcjs-dom-javascript; + jsaddle = addBuildDepend self.ghcjs-base super.jsaddle; + jsaddle-dom = addBuildDepend self.ghcjs-base super.jsaddle-dom; +}) diff --git a/pkgs/development/haskell-modules/configuration-hackage2nix/broken.yaml b/pkgs/development/haskell-modules/configuration-hackage2nix/broken.yaml index 7e743d3eacdf9..ebc065df7ef47 100644 --- a/pkgs/development/haskell-modules/configuration-hackage2nix/broken.yaml +++ b/pkgs/development/haskell-modules/configuration-hackage2nix/broken.yaml @@ -1995,11 +1995,11 @@ broken-packages: - ghc-internal # failure in job https://hydra.nixos.org/build/260723678 at 2024-05-25 - ghcitui # failure in job https://hydra.nixos.org/build/252737339 at 2024-03-16 - ghcjs-base-stub # timeout - - ghcjs-dom-javascript # failure in job https://hydra.nixos.org/build/255688382 at 2024-04-16 - ghcjs-dom-jsffi # failure in job https://hydra.nixos.org/build/233215225 at 2023-09-02 - ghcjs-fetch # timeout - ghcjs-promise # failure in job https://hydra.nixos.org/build/233243985 at 2023-09-02 - ghcjs-xhr # failure in job https://hydra.nixos.org/build/233235693 at 2023-09-02 + - ghcjs-websockets # Does not work on the js backend added in 9.6+, only on ghcjs, where we markUnbroken - ghc-justdoit # failure in job https://hydra.nixos.org/build/233221884 at 2023-09-02 - ghclive # failure in job https://hydra.nixos.org/build/233231592 at 2023-09-02 - ghc-man-completion # failure in job https://hydra.nixos.org/build/233245740 at 2023-09-02 @@ -2609,7 +2609,6 @@ broken-packages: - hledger-chart # failure in job https://hydra.nixos.org/build/233205387 at 2023-09-02 - hledger-diff # failure in job https://hydra.nixos.org/build/233199639 at 2023-09-02 - hledger-flow # failure in job https://hydra.nixos.org/build/233252169 at 2023-09-02 - - hledger-iadd # failure in updateAutotoolsGnuConfigScriptsPhase in job https://hydra.nixos.org/build/238288021 at 2023-10-21 - hledger-irr # failure in job https://hydra.nixos.org/build/233230276 at 2023-09-02 - hledger-makeitso # failure in job https://hydra.nixos.org/build/233213046 at 2023-09-02 - hledger-vty # failure in job https://hydra.nixos.org/build/233191782 at 2023-09-02 @@ -2897,7 +2896,6 @@ broken-packages: - HTicTacToe # failure in job https://hydra.nixos.org/build/233235397 at 2023-09-02 - htiled # failure in job https://hydra.nixos.org/build/233219305 at 2023-09-02 - htlset # failure in job https://hydra.nixos.org/build/233203886 at 2023-09-02 - - html-parse # failure in job https://hydra.nixos.org/build/233241759 at 2023-09-02 - html-rules # failure in job https://hydra.nixos.org/build/233200615 at 2023-09-02 - html-tokenizer # failure in job https://hydra.nixos.org/build/233243581 at 2023-09-02 - htoml # failure in job https://hydra.nixos.org/build/233246670 at 2023-09-02 @@ -3436,7 +3434,6 @@ broken-packages: - lens-process # failure in job https://hydra.nixos.org/build/233242948 at 2023-09-02 - lensref # failure in job https://hydra.nixos.org/build/233205479 at 2023-09-02 - lens-simple # failure in job https://hydra.nixos.org/build/233245452 at 2023-09-02 - - lens-sop # failure in job https://hydra.nixos.org/build/259961739 at 2024-05-19 - lens-tell # failure in job https://hydra.nixos.org/build/233234619 at 2023-09-02 - lens-text-encoding # failure in job https://hydra.nixos.org/build/233222713 at 2023-09-02 - lens-th-rewrite # failure in job https://hydra.nixos.org/build/233201025 at 2023-09-02 @@ -3448,7 +3445,6 @@ broken-packages: - lenz-template # failure in job https://hydra.nixos.org/build/233206822 at 2023-09-02 - less-arbitrary # failure in job https://hydra.nixos.org/build/233231412 at 2023-09-02 - Level0 # failure in job https://hydra.nixos.org/build/233220758 at 2023-09-02 - - leveldb-haskell # failure in job https://hydra.nixos.org/build/252739424 at 2024-03-16 - level-monad # failure in job https://hydra.nixos.org/build/233257036 at 2023-09-02 - levmar # failure in job https://hydra.nixos.org/build/233254731 at 2023-09-02 - lfst # failure in job https://hydra.nixos.org/build/233240622 at 2023-09-02 @@ -4813,7 +4809,6 @@ broken-packages: - pusher-ws # failure in job https://hydra.nixos.org/build/233204133 at 2023-09-02 - pushme # failure in job https://hydra.nixos.org/build/233212481 at 2023-09-02 - push-notifications # failure in job https://hydra.nixos.org/build/233199364 at 2023-09-02 - - push-notify-apn # failure in job https://hydra.nixos.org/build/260189652 at 2024-05-19 - pushover # failure in job https://hydra.nixos.org/build/252739908 at 2024-03-16 - putlenses # failure in job https://hydra.nixos.org/build/233197372 at 2023-09-02 - puzzle-draw # failure in job https://hydra.nixos.org/build/233204953 at 2023-09-02 @@ -5188,7 +5183,6 @@ broken-packages: - scale # failure in job https://hydra.nixos.org/build/233222189 at 2023-09-02 - scaleimage # failure in job https://hydra.nixos.org/build/233240688 at 2023-09-02 - scalendar # failure in job https://hydra.nixos.org/build/233206581 at 2023-09-02 - - scat # failure in job https://hydra.nixos.org/build/252730427 at 2024-03-16 - scc # failure in job https://hydra.nixos.org/build/233247446 at 2023-09-02 - scgi # failure in job https://hydra.nixos.org/build/233247314 at 2023-09-02 - schedevr # failure in job https://hydra.nixos.org/build/233240124 at 2023-09-02 @@ -5244,7 +5238,6 @@ broken-packages: - secure-sockets # failure in job https://hydra.nixos.org/build/233254170 at 2023-09-02 - secureUDP # failure in job https://hydra.nixos.org/build/233215410 at 2023-09-02 - SegmentTree # failure in job https://hydra.nixos.org/build/233216161 at 2023-09-02 - - selda # failure in job https://hydra.nixos.org/build/252735635 at 2024-03-16 - selda-postgresql # failure in job https://hydra.nixos.org/build/245539286 at 2024-01-02 - selectors # failure in job https://hydra.nixos.org/build/233227433 at 2023-09-02 - selenium # failure in job https://hydra.nixos.org/build/233214276 at 2023-09-02 @@ -5344,7 +5337,6 @@ broken-packages: - sessions # failure in job https://hydra.nixos.org/build/233214614 at 2023-09-02 - sessiontypes # failure in job https://hydra.nixos.org/build/233224975 at 2023-09-02 - setdown # failure in job https://hydra.nixos.org/build/241521053 at 2023-12-03 - - set-extra # failure in job https://hydra.nixos.org/build/252738545 at 2024-03-16 - setgame # failure in job https://hydra.nixos.org/build/233218664 at 2023-09-02 - set-of # failure in job https://hydra.nixos.org/build/233202960 at 2023-09-02 - setoid # failure in job https://hydra.nixos.org/build/233213744 at 2023-09-02 @@ -5607,7 +5599,6 @@ broken-packages: - splot # failure in job https://hydra.nixos.org/build/252715661 at 2024-03-16 - Spock-api-ghcjs # failure in job https://hydra.nixos.org/build/233246163 at 2023-09-02 - Spock-auth # failure in job https://hydra.nixos.org/build/233212125 at 2023-09-02 - - Spock-core # failure in job https://hydra.nixos.org/build/252720122 at 2024-03-16 - spoonutil # failure in job https://hydra.nixos.org/build/233257645 at 2023-09-02 - spotify # failure in job https://hydra.nixos.org/build/233254990 at 2023-09-02 - spoty # failure in job https://hydra.nixos.org/build/233233863 at 2023-09-02 diff --git a/pkgs/development/haskell-modules/configuration-hackage2nix/main.yaml b/pkgs/development/haskell-modules/configuration-hackage2nix/main.yaml index 93eebf297e8e8..bc102cb88861d 100644 --- a/pkgs/development/haskell-modules/configuration-hackage2nix/main.yaml +++ b/pkgs/development/haskell-modules/configuration-hackage2nix/main.yaml @@ -152,6 +152,7 @@ package-maintainers: - ghcjs-dom - ghcjs-dom-hello - ghcjs-dom-javascript + - ghcjs-dom-jsaddle - haveibeenpwned - jsaddle - jsaddle-clib @@ -305,15 +306,6 @@ package-maintainers: - elm-export-persistent # - pipes-mongodb - streaming-wai - kiwi: - - config-schema - - config-value - - glirc - - irc-core - - matterhorn - - mattermost-api - - mattermost-api-qc - - Unique libjared: - sensei malo: @@ -649,6 +641,24 @@ package-maintainers: - nix-tree zowoq: - ShellCheck + mpscholten: + - ihp-hsx + - push-notify-apn + - hs-pkpass + - raven-haskell + - stripe-concepts + - stripe-signature + - http2-client + - zip + - currencies + - string-random + - inflections + - pcre-heavy + - mmark + - mmark-ext + - typerep-map + - minio-hs + - smtp-mail unsupported-platforms: Allure: [ platforms.darwin ] @@ -670,7 +680,6 @@ unsupported-platforms: freenect: [ platforms.darwin ] FTGL: [ platforms.darwin ] fuzzytime: [ platforms.darwin ] # https://github.com/kamwitsta/fuzzytime/issues/2 - ghcjs-dom-hello: [ platforms.darwin ] ghc-gc-hook: [ platforms.darwin ] # requires C11 threads which Apple doesn't support gi-adwaita: [ platforms.darwin ] gi-dbusmenugtk3: [ platforms.darwin ] @@ -699,7 +708,6 @@ unsupported-platforms: intricacy: [ platforms.darwin ] # depends on mesa iwlib: [ platforms.darwin ] Jazzkell: [ platforms.darwin ] # depends on Euterpea - jsaddle-hello: [ platforms.darwin ] # depends on jsaddle-webkit2gtk jsaddle-webkit2gtk: [ platforms.darwin ] Kulitta: [ platforms.darwin ] # depends on Euterpea LambdaHack: [ platforms.darwin ] @@ -792,6 +800,8 @@ supported-platforms: geomancy: [ platforms.x86 ] # x86 intrinsics geomancy-layout: [ platforms.x86 ] # x86 intrinsics gi-gtkosxapplication: [ platforms.darwin ] + ghcjs-base: [ javascript-ghcjs ] + ghcjs-dom-javascript: [ javascript-ghcjs ] gtk-mac-integration: [ platforms.darwin ] gtk3-mac-integration: [ platforms.darwin ] halide-haskell: [ platforms.linux ] diff --git a/pkgs/development/haskell-modules/configuration-hackage2nix/transitive-broken.yaml b/pkgs/development/haskell-modules/configuration-hackage2nix/transitive-broken.yaml index b048efbfb5455..02e2d5954d20f 100644 --- a/pkgs/development/haskell-modules/configuration-hackage2nix/transitive-broken.yaml +++ b/pkgs/development/haskell-modules/configuration-hackage2nix/transitive-broken.yaml @@ -378,11 +378,6 @@ dont-distribute-packages: - SourceGraph - SpacePrivateers - SpinCounter - - Spock - - Spock-api-server - - Spock-digestive - - Spock-lucid - - Spock-worker - StockholmAlignment - Strafunski-Sdf2Haskell - SybWidget @@ -670,7 +665,6 @@ dont-distribute-packages: - bip32 - birch-beer - bird - - bisc - biscuit-servant - bishbosh - bit-array @@ -2424,7 +2418,6 @@ dont-distribute-packages: - json-query - json-rpc-client - json-schema - - json-sop - json-spec-elm - json-spec-elm-servant - json-spec-openapi @@ -3575,8 +3568,6 @@ dont-distribute-packages: - secrm - sednaDBXML - seitz-symbol - - selda-json - - selda-sqlite - selenium-server - semantic-source - semantic-version diff --git a/pkgs/development/haskell-modules/default.nix b/pkgs/development/haskell-modules/default.nix index 3f8a0bb750c71..73ce1af7735a0 100644 --- a/pkgs/development/haskell-modules/default.nix +++ b/pkgs/development/haskell-modules/default.nix @@ -9,6 +9,7 @@ , configurationNix ? import ./configuration-nix.nix , configurationArm ? import ./configuration-arm.nix , configurationDarwin ? import ./configuration-darwin.nix +, configurationJS ? import ./configuration-ghcjs-9.x.nix }: let @@ -26,7 +27,10 @@ let (configurationArm { inherit pkgs haskellLib; }) ] ++ lib.optionals stdenv.hostPlatform.isDarwin [ (configurationDarwin { inherit pkgs haskellLib; }) - ]; + ] ++ lib.optionals stdenv.hostPlatform.isGhcjs [ + (configurationJS { inherit pkgs haskellLib; }) + ] + ; extensions = lib.composeManyExtensions ([ (nonHackagePackages { inherit pkgs haskellLib; }) diff --git a/pkgs/development/haskell-modules/generic-builder.nix b/pkgs/development/haskell-modules/generic-builder.nix index 785ba249099bf..6c60efe1bce50 100644 --- a/pkgs/development/haskell-modules/generic-builder.nix +++ b/pkgs/development/haskell-modules/generic-builder.nix @@ -7,6 +7,13 @@ let isCross = stdenv.buildPlatform != stdenv.hostPlatform; + # Note that ghc.isGhcjs != stdenv.hostPlatform.isGhcjs. + # ghc.isGhcjs implies that we are using ghcjs, a project separate from GHC. + # (mere) stdenv.hostPlatform.isGhcjs means that we are using GHC's JavaScript + # backend. The latter is a normal cross compilation backend and needs little + # special accommodation. + outputsJS = ghc.isGhcjs or false || stdenv.hostPlatform.isGhcjs; + # Pass the "wrong" C compiler rather than none at all so packages that just # use the C preproccessor still work, see # https://github.com/haskell/cabal/issues/6466 for details. @@ -19,15 +26,11 @@ let fetchurl removeReferencesTo pkg-config coreutils gnugrep glibcLocales emscripten; + in { pname -# Note that ghc.isGhcjs != stdenv.hostPlatform.isGhcjs. -# ghc.isGhcjs implies that we are using ghcjs, a project separate from GHC. -# (mere) stdenv.hostPlatform.isGhcjs means that we are using GHC's JavaScript -# backend. The latter is a normal cross compilation backend and needs little -# special accommodation. -, dontStrip ? (ghc.isGhcjs or false || stdenv.hostPlatform.isGhcjs) +, dontStrip ? outputsJS , version, revision ? null , sha256 ? null , src ? fetchurl { url = "mirror://hackage/${pname}-${version}.tar.gz"; inherit sha256; } @@ -44,7 +47,7 @@ in , doHaddockQuickjump ? doHoogle , doInstallIntermediates ? false , editedCabalFile ? null -, enableLibraryProfiling ? !(ghc.isGhcjs or false) +, enableLibraryProfiling ? !outputsJS , enableExecutableProfiling ? false , profilingDetail ? "exported-functions" # TODO enable shared libs for cross-compiling @@ -223,7 +226,7 @@ let ] ++ optional (allPkgconfigDepends != []) "--with-pkg-config=${pkg-config.targetPrefix}pkg-config"; - parallelBuildingFlags = "-j$NIX_BUILD_CORES" + optionalString stdenv.isLinux " +RTS -A64M -RTS"; + makeGhcOptions = opts: lib.concatStringsSep " " (map (opt: "--ghc-option=${opt}") opts); buildFlagsString = optionalString (buildFlags != []) (" " + concatStringsSep " " buildFlags); @@ -241,8 +244,8 @@ let "--package-db=$packageConfDir" (optionalString (enableSharedExecutables && stdenv.isLinux) "--ghc-option=-optl=-Wl,-rpath=$out/${ghcLibdir}/${pname}-${version}") (optionalString (enableSharedExecutables && stdenv.isDarwin) "--ghc-option=-optl=-Wl,-headerpad_max_install_names") - (optionalString enableParallelBuilding "--ghc-options=${parallelBuildingFlags}") - (optionalString useCpphs "--with-cpphs=${cpphs}/bin/cpphs --ghc-options=-cpp --ghc-options=-pgmP${cpphs}/bin/cpphs --ghc-options=-optP--cpp") + (optionalString enableParallelBuilding (makeGhcOptions [ "-j$NIX_BUILD_CORES" "+RTS" "-A64M" "-RTS" ])) + (optionalString useCpphs ("--with-cpphs=${cpphs}/bin/cpphs " + (makeGhcOptions [ "-cpp" "-pgmP${cpphs}/bin/cpphs" "-optP--cpp" ]))) (enableFeature enableLibraryProfiling "library-profiling") (optionalString (enableExecutableProfiling || enableLibraryProfiling) "--profiling-detail=${profilingDetail}") (enableFeature enableExecutableProfiling "profiling") @@ -265,16 +268,14 @@ let ) ++ optionals enableSeparateBinOutput [ "--bindir=${binDir}" ] ++ optionals (doHaddockInterfaces && isLibrary) [ - "--ghc-options=-haddock" + "--ghc-option=-haddock" ]; postPhases = optional doInstallIntermediates "installIntermediatesPhase"; setupCompileFlags = [ (optionalString (!coreSetup) "-package-db=$setupPackageConfDir") - (optionalString enableParallelBuilding parallelBuildingFlags) "-threaded" # https://github.com/haskell/cabal/issues/2398 - "-rtsopts" # allow us to pass RTS flags to the generated Setup executable ]; isHaskellPkg = x: x ? isHaskellLibrary; diff --git a/pkgs/development/haskell-modules/hackage-packages.nix b/pkgs/development/haskell-modules/hackage-packages.nix index 0a1efccb62a40..2e81440fca778 100644 --- a/pkgs/development/haskell-modules/hackage-packages.nix +++ b/pkgs/development/haskell-modules/hackage-packages.nix @@ -20331,7 +20331,6 @@ self: { ]; description = "Another Haskell web framework for rapid development"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "Spock-api" = callPackage @@ -20371,7 +20370,6 @@ self: { libraryHaskellDepends = [ base hvect mtl Spock-api Spock-core ]; description = "Another Haskell web framework for rapid development"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "Spock-auth" = callPackage @@ -20415,8 +20413,6 @@ self: { ]; description = "Another Haskell web framework for rapid development"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "Spock-digestive" = callPackage @@ -20433,7 +20429,6 @@ self: { ]; description = "Digestive functors support for Spock"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "Spock-lucid" = callPackage @@ -20445,7 +20440,6 @@ self: { libraryHaskellDepends = [ base lucid Spock transformers ]; description = "Lucid support for Spock"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "Spock-worker" = callPackage @@ -20463,7 +20457,6 @@ self: { testHaskellDepends = [ base containers HTF stm vector ]; description = "Background workers for Spock"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "SpreadsheetML" = callPackage @@ -21841,7 +21834,6 @@ self: { ]; description = "It provides the functionality like unix \"uniq\" utility"; license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.kiwi ]; }) {}; "Unixutils" = callPackage @@ -50668,7 +50660,6 @@ self: { ]; description = "A small tool that clears cookies (and more)"; license = lib.licenses.gpl3Only; - hydraPlatforms = lib.platforms.none; mainProgram = "bisc"; }) {}; @@ -73690,7 +73681,6 @@ self: { testHaskellDepends = [ base config-value text ]; description = "Schema definitions for the config-value package"; license = lib.licenses.isc; - maintainers = [ lib.maintainers.kiwi ]; }) {}; "config-select" = callPackage @@ -73724,7 +73714,6 @@ self: { testHaskellDepends = [ base text ]; description = "Simple, layout-based value language similar to YAML or JSON"; license = lib.licenses.mit; - maintainers = [ lib.maintainers.kiwi ]; }) {}; "config-value-getopt" = callPackage @@ -121353,6 +121342,7 @@ self: { sha256 = "1cx9jqpbr6b30qckp2zpsfk3swa58snjb79pq0l6485nvrxa9mls"; description = "base library for GHCJS"; license = lib.licenses.mit; + platforms = [ "javascript-ghcjs" ]; maintainers = [ lib.maintainers.alexfmpe ]; }) {}; @@ -121422,7 +121412,6 @@ self: { ]; description = "GHCJS DOM Hello World, an example package"; license = lib.licenses.mit; - badPlatforms = lib.platforms.darwin; maintainers = [ lib.maintainers.alexfmpe ]; }) {}; @@ -121434,9 +121423,8 @@ self: { sha256 = "0im7wn7bn43rhkblh0wn9angadbdvywsalfz0adr9pkwv6hvc8qs"; description = "DOM library using JSFFI and GHCJS"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; + platforms = [ "javascript-ghcjs" ]; maintainers = [ lib.maintainers.alexfmpe ]; - broken = true; }) {}; "ghcjs-dom-jsaddle" = callPackage @@ -121449,6 +121437,7 @@ self: { doHaddock = false; description = "DOM library that supports both GHCJS and GHC using jsaddle"; license = lib.licenses.mit; + maintainers = [ lib.maintainers.alexfmpe ]; }) {}; "ghcjs-dom-jsffi" = callPackage @@ -121573,6 +121562,8 @@ self: { ]; description = "Deprecated: use ghcjs-base's native websockets"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "ghcjs-xhr" = callPackage @@ -125281,7 +125272,6 @@ self: { license = lib.licenses.isc; hydraPlatforms = lib.platforms.none; mainProgram = "glirc"; - maintainers = [ lib.maintainers.kiwi ]; }) {}; "gll" = callPackage @@ -151711,9 +151701,7 @@ self: { testToolDepends = [ hspec-discover ]; description = "A terminal UI as drop-in replacement for hledger add"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "hledger-iadd"; - broken = true; }) {}; "hledger-iadd_1_3_21" = callPackage @@ -151749,7 +151737,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "hledger-iadd"; - broken = true; }) {}; "hledger-interest" = callPackage @@ -163899,8 +163886,6 @@ self: { ]; description = "A high-performance HTML tokenizer"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "html-parse-util" = callPackage @@ -175555,7 +175540,6 @@ self: { description = "IRC core library for glirc"; license = lib.licenses.isc; hydraPlatforms = lib.platforms.none; - maintainers = [ lib.maintainers.kiwi ]; broken = true; }) {}; @@ -178690,7 +178674,6 @@ self: { ]; description = "JSaddle Hello World, an example package"; license = lib.licenses.mit; - badPlatforms = lib.platforms.darwin; maintainers = [ lib.maintainers.alexfmpe ]; }) {}; @@ -179537,7 +179520,6 @@ self: { ]; description = "Generics JSON (de)serialization using generics-sop"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.alexfmpe ]; }) {}; @@ -189161,9 +189143,7 @@ self: { ]; description = "Computing lenses generically using generics-sop"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.alexfmpe ]; - broken = true; }) {}; "lens-tell" = callPackage @@ -189498,8 +189478,6 @@ self: { ]; description = "Haskell bindings to LevelDB"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {inherit (pkgs) leveldb;}; "leveldb-haskell-fork" = callPackage @@ -201036,7 +201014,6 @@ self: { description = "Terminal client for the Mattermost chat system"; license = lib.licenses.bsd3; mainProgram = "matterhorn"; - maintainers = [ lib.maintainers.kiwi ]; }) {}; "mattermost-api" = callPackage @@ -201065,7 +201042,6 @@ self: { ]; description = "Client API for Mattermost chat system"; license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.kiwi ]; }) {}; "mattermost-api-qc" = callPackage @@ -201081,7 +201057,6 @@ self: { ]; description = "QuickCheck instances for the Mattermost client API library"; license = lib.licenses.isc; - maintainers = [ lib.maintainers.kiwi ]; }) {}; "maude" = callPackage @@ -249277,9 +249252,7 @@ self: { testHaskellDepends = [ aeson base hspec ]; description = "Send push notifications to mobile iOS devices"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "sendapn"; - broken = true; }) {}; "push-notify-ccs" = callPackage @@ -267562,9 +267535,7 @@ self: { description = "Generates unique passwords for various websites from a single password"; license = lib.licenses.bsd3; platforms = lib.platforms.x86; - hydraPlatforms = lib.platforms.none; mainProgram = "scat"; - broken = true; }) {}; "scc" = callPackage @@ -269939,8 +269910,6 @@ self: { ]; description = "Multi-backend, high-level EDSL for interacting with SQL databases"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "selda-json" = callPackage @@ -269952,7 +269921,6 @@ self: { libraryHaskellDepends = [ aeson base bytestring selda text ]; description = "JSON support for the Selda database library"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "selda-postgresql" = callPackage @@ -269987,7 +269955,6 @@ self: { ]; description = "SQLite backend for the Selda database EDSL"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "select" = callPackage @@ -274945,8 +274912,6 @@ self: { libraryHaskellDepends = [ base containers mtl syb ]; description = "Functions that could be added to Data.Set."; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "set-monad" = callPackage @@ -336488,7 +336453,6 @@ self: { ]; description = "Add CSP headers to Yesod apps"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "yesod-datatables" = callPackage diff --git a/pkgs/development/interpreters/acl2/default.nix b/pkgs/development/interpreters/acl2/default.nix index d1f64918c8249..12fc8f228b7ff 100644 --- a/pkgs/development/interpreters/acl2/default.nix +++ b/pkgs/development/interpreters/acl2/default.nix @@ -9,7 +9,7 @@ let # supply 2GB of dynamic space to avoid exhausting the heap while building the # ACL2 system itself; see # https://www.cs.utexas.edu/users/moore/acl2/current/HTML/installation/requirements.html#Obtaining-SBCL - sbcl' = args.sbcl.override { disableImmobileSpace = true; }; + sbcl' = args.sbcl.overrideAttrs { disableImmobileSpace = true; }; sbcl = runCommandLocal args.sbcl.name { nativeBuildInputs = [ makeWrapper ]; } '' makeWrapper ${sbcl'}/bin/sbcl $out/bin/sbcl \ --add-flags "--dynamic-space-size 2000" diff --git a/pkgs/development/interpreters/wasmtime/default.nix b/pkgs/development/interpreters/wasmtime/default.nix index c9123773b137f..b54a6478be022 100644 --- a/pkgs/development/interpreters/wasmtime/default.nix +++ b/pkgs/development/interpreters/wasmtime/default.nix @@ -2,19 +2,19 @@ rustPlatform.buildRustPackage rec { pname = "wasmtime"; - version = "21.0.1"; + version = "22.0.0"; src = fetchFromGitHub { owner = "bytecodealliance"; repo = pname; rev = "v${version}"; - hash = "sha256-KmxjZZC31n1gtuT89sc9Tpo9hmDivA8p4YK1L0/HFoM="; + hash = "sha256-pVASjiGADtimXqnsit673v6nD77loN2nBphwgIMAvBA="; fetchSubmodules = true; }; # Disable cargo-auditable until https://github.com/rust-secure-code/cargo-auditable/issues/124 is solved. auditable = false; - cargoHash = "sha256-TSk3EljqUdSydXUdRftWar9Ss81N/WMNvSTvM0JUk98="; + cargoHash = "sha256-s/+aKIu1V9iD8eTqHlHuhvC6oRDjX9IfI7tz3R1M5tw="; cargoBuildFlags = [ "--package" "wasmtime-cli" "--package" "wasmtime-c-api" ]; outputs = [ "out" "dev" ]; diff --git a/pkgs/development/libraries/aspell/dictionaries.nix b/pkgs/development/libraries/aspell/dictionaries.nix index ba5b3d6ddd515..60f11fd23d84c 100644 --- a/pkgs/development/libraries/aspell/dictionaries.nix +++ b/pkgs/development/libraries/aspell/dictionaries.nix @@ -189,6 +189,7 @@ in rec { fullName = "Afrikaans"; filename = "aspell"; sha256 = "00p6k2ndi0gzfr5fkbvx4hkcpj223pidjvmxg0r384arrap00q4x"; + meta.license = lib.licenses.lgpl21Only; }; am = buildOfficialDict { @@ -197,6 +198,7 @@ in rec { fullName = "Amharic"; filename = "aspell6"; sha256 = "11ylp7gjq94wfacyawvp391lsq26rl1b84f268rjn7l7z0hxs9xz"; + meta.license = lib.licenses.publicDomain; }; ar = buildOfficialDict { @@ -205,6 +207,7 @@ in rec { fullName = "Arabic"; filename = "aspell6"; sha256 = "1avw40bp8yi5bnkq64ihm2rldgw34lk89yz281q9bmndh95a47h4"; + meta.license = lib.licenses.gpl2Only; }; ast = buildOfficialDict { @@ -213,6 +216,7 @@ in rec { fullName = "Asturian"; filename = "aspell6"; sha256 = "14hg85mxcyvdigf96yvslk7f3v9ngdsxn85qpgwkg31k3k83xwj3"; + meta.license = lib.licenses.gpl2Only; }; az = buildOfficialDict { @@ -221,6 +225,7 @@ in rec { fullName = "Azerbaijani"; filename = "aspell6"; sha256 = "1hs4h1jscpxf9f9iyk6mvjqsnhkf0yslkbjhjkasqqcx8pn7cc86"; + meta.license = lib.licenses.gpl2Only; }; be = buildOfficialDict { @@ -229,6 +234,7 @@ in rec { fullName = "Belarusian"; filename = "aspell5"; sha256 = "1svls9p7rsfi3hs0afh0cssj006qb4v1ik2yzqgj8hm10c6as2sm"; + meta.license = lib.licenses.gpl2Only; }; bg = buildOfficialDict { @@ -237,6 +243,7 @@ in rec { fullName = "Bulgarian"; filename = "aspell6"; sha256 = "1alacmgpfk0yrgq83y23d16fhav1bxmb98kg8d2a5r9bvh2h0mvl"; + meta.license = lib.licenses.gpl2Only; }; bn = buildOfficialDict { @@ -245,6 +252,7 @@ in rec { fullName = "Bengali"; filename = "aspell6"; sha256 = "1nc02jd67iggirwxnhdvlvaqm0xfyks35c4psszzj3dhzv29qgxh"; + meta.license = lib.licenses.gpl2Only; }; br = buildOfficialDict { @@ -253,6 +261,7 @@ in rec { fullName = "Breton"; filename = "aspell"; sha256 = "0fradnm8424bkq9a9zhpl2132dk7y95xmw45sy1c0lx6rinjl4n2"; + meta.license = lib.licenses.gpl2Only; }; ca = buildOfficialDict { @@ -261,6 +270,7 @@ in rec { fullName = "Catalan"; filename = "aspell6"; sha256 = "1fb5y5kgvk25nlsfvc8cai978hg66x3pbp9py56pldc7vxzf9npb"; + meta.license = lib.licenses.gpl2Only; }; cs = buildOfficialDict { @@ -269,6 +279,7 @@ in rec { fullName = "Czech"; filename = "aspell6"; sha256 = "0rihj4hsw96pd9casvmpvw3r8040pfa28p1h73x4vyn20zwr3h01"; + meta.license = lib.licenses.gpl2Only; }; csb = buildOfficialDict { @@ -277,6 +288,7 @@ in rec { fullName = "Kashubian"; filename = "aspell6"; sha256 = "1612ypkm684wjvc7n081i87mlrrzif9simc7kyn177hfsl3ssrn1"; + meta.license = lib.licenses.gpl2Only; }; cy = buildOfficialDict { @@ -285,6 +297,7 @@ in rec { fullName = "Welsh"; filename = "aspell"; sha256 = "15vq601lzz1gi311xym4bv9lv1k21xcfn50jmzamw7h6f36rsffm"; + meta.license = lib.licenses.gpl2Only; }; da = buildOfficialDict { @@ -293,6 +306,7 @@ in rec { fullName = "Danish"; filename = "aspell5"; sha256 = "1hfkmiyhgrx5lgrb2mffjbdn1hivrm73wcg7x0iid74p2yb0fjpp"; + meta.license = lib.licenses.gpl2Only; }; de = buildOfficialDict { @@ -301,6 +315,7 @@ in rec { fullName = "German"; filename = "aspell6"; sha256 = "0wamclvp66xfmv5wff96v6gdlnfv4y8lx3f8wvxyzm5imwgms4n2"; + meta.license = lib.licenses.gpl2Plus; }; de-alt = buildOfficialDict { @@ -309,6 +324,7 @@ in rec { fullName = "German - Old Spelling"; filename = "aspell6"; sha256 = "0wwc2l29svv3fv041fh6vfa5m3hi9q9pkbxibzq1ysrsfin3rl9n"; + meta.license = lib.licenses.gpl2Only; }; el = buildOfficialDict { @@ -317,6 +333,7 @@ in rec { fullName = "Greek"; filename = "aspell6"; sha256 = "1ljcc30zg2v2h3w5h5jr5im41mw8jbsgvvhdd2cii2yzi8d0zxja"; + meta.license = lib.licenses.gpl2Only; }; en = buildOfficialDict { @@ -325,6 +342,13 @@ in rec { fullName = "English"; filename = "aspell6"; sha256 = "1cwzqkm8gr1w51rpckwlvb43sb0b5nbwy7s8ns5vi250515773sc"; + # some parts are under a custom free license others are just stated to be"public domain" + # see the Copyright file in the source for further information + meta.license = with lib.licenses; [ + free + publicDomain + bsdOriginalUC + ]; }; eo = buildOfficialDict { @@ -333,6 +357,7 @@ in rec { fullName = "Esperanto"; filename = "aspell6"; sha256 = "09vf0mbiicbmyb4bwb7v7lgpabnylg0wy7m3hlhl5rjdda6x3lj1"; + meta.license = lib.licenses.gpl2Only; }; es = buildOfficialDict { @@ -341,6 +366,7 @@ in rec { fullName = "Spanish"; filename = "aspell6"; sha256 = "1k5g328ac1hdpp6fsg57d8md6i0aqcwlszp3gbmp5706wyhpydmd"; + meta.license = lib.licenses.gpl2Only; }; et = buildOfficialDict { @@ -349,6 +375,7 @@ in rec { fullName = "Estonian"; filename = "aspell6"; sha256 = "0jdjfa2fskirhnb70fy86xryp9r6gkl729ib8qcjmsma7nm5gs5i"; + meta.license = lib.licenses.lgpl21Only; }; fa = buildOfficialDict { @@ -357,6 +384,7 @@ in rec { fullName = "Persian"; filename = "aspell6"; sha256 = "0nz1ybwv56q7nl9ip12hfmdch1vyyq2j55bkjcns13lshzm2cba8"; + meta.license = lib.licenses.gpl2Only; }; fi = buildOfficialDict { @@ -365,6 +393,7 @@ in rec { fullName = "Finnish"; filename = "aspell6"; sha256 = "07d5s08ba4dd89cmwy9icc01i6fjdykxlb9ravmhdrhi8mxz1mzq"; + meta.license = lib.licenses.gpl2Only; }; fo = buildOfficialDict { @@ -373,6 +402,7 @@ in rec { fullName = "Faroese"; filename = "aspell5"; sha256 = "022yz5lll20xrzizcyb7wksm3fgwklnvgnir5la5qkxv770dvq7p"; + meta.license = lib.licenses.gpl2Only; }; fr = buildOfficialDict { @@ -381,6 +411,7 @@ in rec { fullName = "French"; filename = "aspell"; sha256 = "14ffy9mn5jqqpp437kannc3559bfdrpk7r36ljkzjalxa53i0hpr"; + meta.license = lib.licenses.gpl2Only; }; fy = buildOfficialDict { @@ -389,6 +420,7 @@ in rec { fullName = "Frisian"; filename = "aspell6"; sha256 = "1almi6n4ni91d0rzrk8ig0473m9ypbwqmg56hchz76j51slwyirl"; + meta.license = lib.licenses.gpl2Only; }; ga = buildOfficialDict { @@ -397,6 +429,7 @@ in rec { fullName = "Irish"; filename = "aspell5"; sha256 = "0y869mmvfb3bzadfgajwa2rfb0xfhi6m9ydwgxkb9v2claydnps5"; + meta.license = lib.licenses.gpl2Only; }; gd = buildOfficialDict { @@ -405,6 +438,7 @@ in rec { fullName = "Scottish Gaelic"; filename = "aspell5"; sha256 = "0a89irv5d65j5m9sb0k36851x5rs0wij12gb2m6hv2nsfn5a05p3"; + meta.license = lib.licenses.gpl2Only; }; gl = buildOfficialDict { @@ -413,6 +447,7 @@ in rec { fullName = "Galician"; filename = "aspell6"; sha256 = "12pwghmy18fcdvf9hvhb4q6shi339hb1kwxpkz0bhw0yjxjwzkdk"; + meta.license = lib.licenses.gpl2Only; }; grc = buildOfficialDict { @@ -421,6 +456,7 @@ in rec { fullName = "Ancient Greek"; filename = "aspell6"; sha256 = "1zxr8958v37v260fkqd4pg37ns5h5kyqm54hn1hg70wq5cz8h512"; + meta.license = lib.licenses.gpl3Only; }; gu = buildOfficialDict { @@ -429,6 +465,7 @@ in rec { fullName = "Gujarati"; filename = "aspell6"; sha256 = "04c38jnl74lpj2jhjz4zpqbs2623vwc71m6wc5h4b1karid14b23"; + meta.license = lib.licenses.gpl2Only; }; gv = buildOfficialDict { @@ -437,6 +474,7 @@ in rec { fullName = "Manx Gaelic"; filename = "aspell"; sha256 = "1rknf4yaw9s29c77sdzg98nhnmjwpicdb69igmz1n768npz2drmv"; + meta.license = lib.licenses.gpl2Only; }; he = buildOfficialDict { @@ -445,6 +483,7 @@ in rec { fullName = "Hebrew"; filename = "aspell6"; sha256 = "13bhbghx5b8g0119g3wxd4n8mlf707y41vlf59irxjj0kynankfn"; + meta.license = lib.licenses.gpl2Only; }; hi = buildOfficialDict { @@ -453,6 +492,7 @@ in rec { fullName = "Hindi"; filename = "aspell6"; sha256 = "0drs374qz4419zx1lf2k281ydxf2750jk5ailafj1x0ncz27h1ys"; + meta.license = lib.licenses.gpl2Only; }; hil = buildOfficialDict { @@ -461,6 +501,7 @@ in rec { fullName = "Hiligaynon"; filename = "aspell5"; sha256 = "1s482fsfhzic9qa80al4418q3ni3gfn2bkwkd2y46ydrs17kf2jp"; + meta.license = lib.licenses.gpl2Only; }; hr = buildOfficialDict { @@ -469,6 +510,7 @@ in rec { fullName = "Croatian"; filename = "aspell"; sha256 = "09aafyf1vqhaxvcf3jfzf365k394b5pf0iivsr2ix5npah1h7i1a"; + meta.license = lib.licenses.lgpl21Only; }; hsb = buildOfficialDict { @@ -477,6 +519,7 @@ in rec { fullName = "Upper Sorbian"; filename = "aspell6"; sha256 = "0bi2vhz7n1vmg43wbbh935pmzihv80iyz9z65j94lxf753j2m7wd"; + meta.license = lib.licenses.gpl2Only; }; hu = buildOfficialDict { @@ -485,6 +528,7 @@ in rec { fullName = "Hungarian"; filename = "aspell6"; sha256 = "1d9nybip2k1dz69zly3iv0npbi3yxgfznh1py364nxzrbjsafd9k"; + meta.license = lib.licenses.gpl2Only; }; hus = buildOfficialDict { @@ -493,6 +537,7 @@ in rec { fullName = "Huastec"; filename = "aspell6"; sha256 = "09glipfpkz9xch17z11zw1yn2z7jx1f2svfmjn9l6wm1s5qz6a3d"; + meta.license = lib.licenses.gpl3Only; }; hy = buildOfficialDict { @@ -501,6 +546,7 @@ in rec { fullName = "Armenian"; filename = "aspell6"; sha256 = "1w5wq8lfl2xp1nid30b1j5qmya4vjyidq0vpr4y3gf53jc08vsid"; + meta.license = lib.licenses.gpl2Only; }; ia = buildOfficialDict { @@ -509,6 +555,7 @@ in rec { fullName = "Interlingua"; filename = "aspell"; sha256 = "0bqcpgsa72pga24fv4fkw38b4qqdvqsw97jvzvw7q03dc1cwp5sp"; + meta.license = lib.licenses.lgpl21Only; }; id = buildOfficialDict { @@ -517,6 +564,7 @@ in rec { fullName = "Indonesian"; filename = "aspell5"; sha256 = "023knfg0q03f7y5w6xnwa1kspnrcvcnky8xvdms93n2850414faj"; + meta.license = lib.licenses.gpl2Only; }; is = buildOfficialDict { @@ -525,6 +573,7 @@ in rec { fullName = "Icelandic"; filename = "aspell"; sha256 = "1mp3248lhbr13cj7iq9zs7h5ix0dcwlprp5cwrkcwafrv8lvsd9h"; + meta.license = lib.licenses.gpl2Only; }; it = buildOfficialDict { @@ -533,6 +582,7 @@ in rec { fullName = "Italian"; filename = "aspell6"; sha256 = "1gdf7bc1a0kmxsmphdqq8pl01h667mjsj6hihy6kqy14k5qdq69v"; + meta.license = lib.licenses.gpl2Plus; }; kn = buildOfficialDict { @@ -541,6 +591,7 @@ in rec { fullName = "Kannada"; filename = "aspell6"; sha256 = "10sk0wx4x4ds1403kf9dqxv9yjvh06w8qqf4agx57y0jlws0n0fb"; + meta.license = lib.licenses.gpl3Only; }; ku = buildOfficialDict { @@ -549,6 +600,7 @@ in rec { fullName = "Kurdi"; filename = "aspell5"; sha256 = "09va98krfbgdaxl101nmd85j3ysqgg88qgfcl42c07crii0pd3wn"; + meta.license = lib.licenses.gpl2Only; }; ky = buildOfficialDict { @@ -557,6 +609,7 @@ in rec { fullName = "Kirghiz"; filename = "aspell6"; sha256 = "0kzv2syjnnn6pnwx0d578n46hg2l0j62977al47y6wabnhjjy3z1"; + meta.license = lib.licenses.gpl2Only; }; la = buildOfficialDict { @@ -565,6 +618,7 @@ in rec { fullName = "Latin"; filename = "aspell6"; sha256 = "1199inwi16dznzl087v4skn66fl7h555hi2palx6s1f3s54b11nl"; + meta.license = lib.licenses.gpl2Only; }; lt = buildOfficialDict { @@ -573,6 +627,7 @@ in rec { fullName = "Lithuanian"; filename = "aspell6"; sha256 = "1asjck911l96q26zj36lmz0jp4b6pivvrf3h38zgc8lc85p3pxgn"; + meta.license = lib.licenses.bsd3; }; lv = buildOfficialDict { @@ -581,6 +636,7 @@ in rec { fullName = "Latvian"; filename = "aspell6"; sha256 = "12pvs584a6437ijndggdqpp5s7d0w607cimpkxsjwasnx83f4c1w"; + meta.license = lib.licenses.gpl2Only; }; mg = buildOfficialDict { @@ -589,6 +645,7 @@ in rec { fullName = "Malagasy"; filename = "aspell5"; sha256 = "0hdhbk9b5immjp8l5h4cy82gwgsqzcqbb0qsf7syw333w4rgi0ji"; + meta.license = lib.licenses.gpl2Only; }; mi = buildOfficialDict { @@ -597,6 +654,7 @@ in rec { fullName = "Maori"; filename = "aspell"; sha256 = "12bxplpd348yx8d2q8qvahi9dlp7qf28qmanzhziwc7np8rixvmy"; + meta.license = lib.licenses.lgpl21Only; }; mk = buildOfficialDict { @@ -605,6 +663,7 @@ in rec { fullName = "Macedonian"; filename = "aspell"; sha256 = "0wcr9n882xi5b7a7ln1hnhq4vfqd5gpqqp87v01j0gb7zf027z0m"; + meta.license = lib.licenses.gpl2Only; }; ml = buildOfficialDict { @@ -613,6 +672,7 @@ in rec { fullName = "Malayalam"; filename = "aspell6"; sha256 = "1zcn4114gwia085fkz77qk13z29xrbp53q2qvgj2cvcbalg5bkg4"; + meta.license = lib.licenses.gpl3Only; }; mn = buildOfficialDict { @@ -621,6 +681,7 @@ in rec { fullName = "Mongolian"; filename = "aspell6"; sha256 = "150j9y5c9pw80fwp5rzl5q31q9vjbxixaqljkfwxjb5q93fnw6rg"; + meta.license = lib.licenses.gpl2Only; }; mr = buildOfficialDict { @@ -629,6 +690,7 @@ in rec { fullName = "Marathi"; filename = "aspell6"; sha256 = "0cvgb2l40sppqbi842ivpznsh2xzp1d4hxc371dll8z0pr05m8yk"; + meta.license = lib.licenses.gpl2Only; }; ms = buildOfficialDict { @@ -637,6 +699,7 @@ in rec { fullName = "Malay"; filename = "aspell"; sha256 = "0vr4vhipcfhsxqfs8dim2ph7iiixn22gmlmlb375bx5hgd9y7i1w"; + meta.license = lib.licenses.fdl12Only; }; mt = buildOfficialDict { @@ -645,6 +708,7 @@ in rec { fullName = "Maltese"; filename = "aspell"; sha256 = "1d2rl1nlfjq6rfywblvx8m88cyy2x0mzc0mshzbgw359c2nwl3z0"; + meta.license = lib.licenses.lgpl21Only; }; nb = buildOfficialDict { @@ -653,6 +717,7 @@ in rec { fullName = "Norwegian Bokmal"; filename = "aspell"; sha256 = "12i2bmgdnlkzfinb20j2a0j4a20q91a9j8qpq5vgabbvc65nwx77"; + meta.license = lib.licenses.gpl2Only; }; nds = buildOfficialDict { @@ -661,6 +726,7 @@ in rec { fullName = "Low Saxon"; filename = "aspell6"; sha256 = "1nkjhwzn45dizi89d19q4bqyd87cim8xyrgr655fampgkn31wf6f"; + meta.license = lib.licenses.lgpl21Only; }; nl = buildOfficialDict { @@ -673,6 +739,11 @@ in rec { postInstall = '' echo "add nl.rws" > $out/lib/aspell/nederlands.multi ''; + # from the Copyright file: + # > The nl-aspell package includes the GPL COPYRIGHT file but no explicit copyright + # > notice. Since he was using autoconf this could have been added automatically. + # wtf whatever + meta.license = lib.licenses.free; }; nn = buildOfficialDict { @@ -681,6 +752,7 @@ in rec { fullName = "Norwegian Nynorsk"; filename = "aspell"; sha256 = "0w2k5l5rbqpliripgqwiqixz5ghnjf7i9ggbrc4ly4vy1ia10rmc"; + meta.license = lib.licenses.gpl2Only; }; ny = buildOfficialDict { @@ -689,6 +761,7 @@ in rec { fullName = "Chichewa"; filename = "aspell5"; sha256 = "0gjb92vcg60sfgvrm2f6i89sfkgb179ahvwlgs649fx3dc7rfvqp"; + meta.license = lib.licenses.gpl2Only; }; or = buildOfficialDict { @@ -697,6 +770,7 @@ in rec { fullName = "Oriya"; filename = "aspell6"; sha256 = "0kzj9q225z0ccrlbkijsrafy005pbjy14qcnxb6p93ciz1ls7zyn"; + meta.license = lib.licenses.gpl2Only; }; pa = buildOfficialDict { @@ -705,6 +779,7 @@ in rec { fullName = "Punjabi"; filename = "aspell6"; sha256 = "0if93zk10pyrs38wwj3vpcdm01h51m5z9gm85h3jxrpgqnqspwy7"; + meta.license = lib.licenses.gpl2Only; }; pl = buildOfficialDict { @@ -713,6 +788,12 @@ in rec { fullName = "Polish"; filename = "aspell6"; sha256 = "0kap4kh6bqbb22ypja1m5z3krc06vv4n0hakiiqmv20anzy42xq1"; + meta.license = with lib.licenses; [ + gpl2Only + lgpl21Only + mpl11 + cc-sa-10 + ]; }; pt_BR = buildOfficialDict { @@ -721,6 +802,11 @@ in rec { fullName = "Brazilian Portuguese"; filename = "aspell6"; sha256 = "1xqlpk21s93c6blkdnpk7l62q9fxjvzdv2x86chl8p2x1gdrj3gb"; + meta.license = with lib.licenses; [ + lgpl21Only + lgpl21Plus + gpl3Plus + ]; }; pt_PT = buildOfficialDict { @@ -729,6 +815,11 @@ in rec { fullName = "Portuguese"; filename = "aspell6"; sha256 = "0ld0d0ily4jqifjfsxfv4shbicz6ymm2gk56fq9gbzra1j4qnw75"; + meta.license = with lib.licenses; [ + lgpl21Plus + gpl3Plus + mpl11 + ]; }; qu = buildOfficialDict { @@ -737,6 +828,7 @@ in rec { fullName = "Quechua"; filename = "aspell6"; sha256 = "009z0zsvzq7r3z3m30clyibs94v77b92h5lmzmzxlns2p0lpd5w0"; + meta.license = lib.licenses.gpl2Only; }; ro = buildOfficialDict { @@ -745,6 +837,7 @@ in rec { fullName = "Romanian"; filename = "aspell5"; sha256 = "0gb8j9iy1acdl11jq76idgc2lbc1rq3w04favn8cyh55d1v8phsk"; + meta.license = lib.licenses.gpl2Only; }; ru = buildOfficialDict { @@ -753,6 +846,7 @@ in rec { fullName = "Russian"; filename = "aspell6"; sha256 = "0ip6nq43hcr7vvzbv4lwwmlwgfa60hrhsldh9xy3zg2prv6bcaaw"; + meta.license = lib.licenses.free; }; rw = buildOfficialDict { @@ -761,6 +855,7 @@ in rec { fullName = "Kinyarwanda"; filename = "aspell"; sha256 = "10gh8g747jbrvfk2fn3pjxy1nhcfdpwgmnvkmrp4nd1k1qp101il"; + meta.license = lib.licenses.gpl2Only; }; sc = buildOfficialDict { @@ -769,6 +864,7 @@ in rec { fullName = "Sardinian"; filename = "aspell5"; sha256 = "0hl7prh5rccsyljwrv3m1hjcsphyrrywk2qvnj122irbf4py46jr"; + meta.license = lib.licenses.gpl2Only; }; sk = buildOfficialDict { @@ -777,6 +873,11 @@ in rec { fullName = "Slovak"; filename = "aspell6"; sha256 = "19k0m1v5pcf7xr4lxgjkzqkdlks8nyb13bvi1n7521f3i4lhma66"; + meta.license = with lib.licenses; [ + lgpl21Only + gpl2Only + mpl11 + ]; }; sl = buildOfficialDict { @@ -785,6 +886,7 @@ in rec { fullName = "Slovenian"; filename = "aspell"; sha256 = "1l9kc5g35flq8kw9jhn2n0bjb4sipjs4qkqzgggs438kywkx2rp5"; + meta.license = lib.licenses.gpl2Only; }; sr = buildOfficialDict { @@ -793,6 +895,7 @@ in rec { fullName = "Serbian"; filename = "aspell6"; sha256 = "12cj01p4nj80cpf7m3s4jsaf0rsfng7s295j9jfchcq677xmhpkh"; + meta.license = lib.licenses.lgpl21Only; }; sv = buildOfficialDict { @@ -801,6 +904,7 @@ in rec { fullName = "Swedish"; filename = "aspell"; sha256 = "02jwkjhr32kvyibnyzgx3smbnm576jwdzg3avdf6zxwckhy5fw4v"; + meta.license = lib.licenses.lgpl21Only; }; sw = buildOfficialDict { @@ -809,6 +913,7 @@ in rec { fullName = "Swahili"; filename = "aspell"; sha256 = "15zjh7hdj2b4dgm5bc12w1ims9q357p1q3gjalspnyn5gl81zmby"; + meta.license = lib.licenses.lgpl21Only; }; ta = buildOfficialDict { @@ -817,6 +922,7 @@ in rec { fullName = "Tamil"; filename = "aspell6"; sha256 = "0sj8ygjsyvnr93cs6324y7az7k2vyw7rjxdc9vnm7z60lbqm5xaj"; + meta.license = lib.licenses.gpl2Only; }; te = buildOfficialDict { @@ -825,6 +931,7 @@ in rec { fullName = "Telugu"; filename = "aspell6"; sha256 = "0pgcgxz7dz34zxp9sb85jjzbg3ky6il5wmhffz6ayrbsfn5670in"; + meta.license = lib.licenses.gpl2Only; }; tet = buildOfficialDict { @@ -833,6 +940,7 @@ in rec { fullName = "Tetum"; filename = "aspell5"; sha256 = "17n0y4fhjak47j9qnqf4m4z6zra6dn72rwhp7ig0hhlgqk4ldmcx"; + meta.license = lib.licenses.gpl2Only; }; tk = buildOfficialDict { @@ -841,6 +949,7 @@ in rec { fullName = "Turkmen"; filename = "aspell5"; sha256 = "02vad4jqhr0xpzqi5q5z7z0xxqccbn8j0c5dhpnm86mnr84l5wl6"; + meta.license = lib.licenses.gpl2Only; }; tl = buildOfficialDict { @@ -849,6 +958,7 @@ in rec { fullName = "Tagalog"; filename = "aspell5"; sha256 = "1kca6k7qnpfvvwjnq5r1n242payqsjy96skmw78m7ww6d0n5vdj8"; + meta.license = lib.licenses.gpl2Only; }; tn = buildOfficialDict { @@ -857,6 +967,7 @@ in rec { fullName = "Setswana"; filename = "aspell5"; sha256 = "0q5x7c6z88cn0kkpk7q1craq34g4g03v8x3xcj5a5jia3l7c5821"; + meta.license = lib.licenses.gpl2Only; }; tr = buildOfficialDict { @@ -865,6 +976,7 @@ in rec { fullName = "Turkish"; filename = "aspell"; sha256 = "0jpvpm96ga7s7rmsm6rbyrrr22b2dicxv2hy7ysv5y7bbq757ihb"; + meta.license = lib.licenses.gpl2Only; }; uk = buildOfficialDict { @@ -873,6 +985,10 @@ in rec { fullName = "Ukrainian"; filename = "aspell6"; sha256 = "137i4njvnslab6l4s291s11xijr5jsy75lbdph32f9y183lagy9m"; + meta.license = with lib.licenses; [ + lgpl2Plus + gpl2Plus + ]; }; uz = buildOfficialDict { @@ -881,6 +997,7 @@ in rec { fullName = "Uzbek"; filename = "aspell6"; sha256 = "0sg3wlyply1idpq5ypyj7kgnaadaiskci1sqs811yhg2gzyc3092"; + meta.license = lib.licenses.gpl2Only; }; vi = buildOfficialDict { @@ -889,6 +1006,7 @@ in rec { fullName = "Vietnamese"; filename = "aspell6"; sha256 = "05vwgvf1cj45azhflywx69javqdvqd1f20swrc2d3c32pd9mvn1w"; + meta.license = lib.licenses.gpl2Only; }; wa = buildOfficialDict { @@ -897,6 +1015,7 @@ in rec { fullName = "Walloon"; filename = "aspell"; sha256 = "1r1zwz7xkx40dga9vf5wc9ja3jwk1dkpcr1kaa7wryvslf5al5ss"; + meta.license = lib.licenses.gpl2Only; }; yi = buildOfficialDict { @@ -905,6 +1024,7 @@ in rec { fullName = "Yiddish"; filename = "aspell6"; sha256 = "0mi842l4038bx3ll2wx9nz44nqrg1x46h5b02zigi1hbbddd6ycq"; + meta.license = lib.licenses.gpl2Only; }; zu = buildOfficialDict { @@ -913,6 +1033,7 @@ in rec { fullName = "Zulu"; filename = "aspell"; sha256 = "15k7gaxrnqnssdyk9l6g27dq317dqp9jz5yzafd25ri01g6mb8iz"; + meta.license = lib.licenses.lgpl21Only; }; ### Jargons @@ -937,6 +1058,7 @@ in rec { meta = { homepage = "https://mrsatterly.com/spelling.html"; + license = lib.licenses.wtfpl; # as a comment the source file }; }; @@ -945,13 +1067,13 @@ in rec { fullName = "English Scientific Jargon"; src1 = fetchurl { - url = "http://jpetrie.net/wp-content/uploads/custom_scientific_US.txt"; - sha256 = "1nf4py2mg0mlv9s5a7had2wn29z2v6bcca0fs6rbpdn4nqc4s7dm"; + url = "https://web.archive.org/web/20180806094650if_/http://jpetrie.net/wp-content/uploads/custom_scientific_US.txt"; + hash = "sha256-I5d/jf/5v9Nptu2H9qfvMBzSwJYoQOTEzJfQTxKoWN8="; }; src2 = fetchurl { - url = "http://jpetrie.net/wp-content/uploads/custom_scientific_UK.txt"; - sha256 = "0f88il1ds6qazy1ghxviqcwsywrbf6pzl2lmzf4f3qvhdfb6f1y0"; + url = "https://web.archive.org/web/20180131231829if_/http://jpetrie.net/wp-content/uploads/custom_scientific_UK.txt"; + hash = "sha256-oT4nUiev5q4QjHeuF8jNVBcyyHE9fdH9+uDMkZsOWp8="; }; langInputs = [ en ]; @@ -965,7 +1087,9 @@ in rec { installPhase = "aspell-install en_US-science en_GB-science"; meta = { - homepage = "http://www.jpetrie.net/scientific-word-list-for-spell-checkersspelling-dictionaries/"; + homepage = "https://web.archive.org/web/20210425104207/http://www.jpetrie.net/scientific-word-list-for-spell-checkersspelling-dictionaries/"; + # no license is given so we have to assume it is unfree + license = lib.licenses.unfree; }; }; diff --git a/pkgs/development/libraries/audio/game-music-emu/default.nix b/pkgs/development/libraries/audio/game-music-emu/default.nix index bf0c6108520c4..94b8d1cbc3750 100644 --- a/pkgs/development/libraries/audio/game-music-emu/default.nix +++ b/pkgs/development/libraries/audio/game-music-emu/default.nix @@ -25,6 +25,6 @@ stdenv.mkDerivation rec { description = "Collection of video game music file emulators"; license = licenses.lgpl21Plus; platforms = platforms.all; - maintainers = with maintainers; [ luc65r lheckemann ]; + maintainers = with maintainers; [ luc65r ]; }; } diff --git a/pkgs/development/libraries/dlib/default.nix b/pkgs/development/libraries/dlib/default.nix index 9a9b774ad265e..e7915ad652144 100644 --- a/pkgs/development/libraries/dlib/default.nix +++ b/pkgs/development/libraries/dlib/default.nix @@ -11,6 +11,7 @@ , config , guiSupport ? false , libX11 +, enableShared ? !stdenv.hostPlatform.isStatic # dlib has a build system that forces the user to choose between either shared or static libraries. See https://github.com/davisking/dlib/issues/923#issuecomment-2175865174 , sse4Support ? stdenv.hostPlatform.sse4_1Support , avxSupport ? stdenv.hostPlatform.avxSupport , cudaSupport ? config.cudaSupport @@ -32,6 +33,7 @@ ''; cmakeFlags = [ + (lib.cmakeBool "BUILD_SHARED_LIBS" enableShared) (lib.cmakeBool "USE_SSE4_INSTRUCTIONS" sse4Support) (lib.cmakeBool "USE_AVX_INSTRUCTIONS" avxSupport) (lib.cmakeBool "DLIB_USE_CUDA" cudaSupport) diff --git a/pkgs/development/libraries/igraph/default.nix b/pkgs/development/libraries/igraph/default.nix index 5f0dbaec153c0..c55f3ee186614 100644 --- a/pkgs/development/libraries/igraph/default.nix +++ b/pkgs/development/libraries/igraph/default.nix @@ -26,13 +26,13 @@ assert (blas.isILP64 == lapack.isILP64 && stdenv.mkDerivation (finalAttrs: { pname = "igraph"; - version = "0.10.11"; + version = "0.10.12"; src = fetchFromGitHub { owner = "igraph"; repo = finalAttrs.pname; rev = finalAttrs.version; - hash = "sha256-RUxA9j2VDzwuYO/1HtyF3/ejGCJ7Gdjm7U8/Q8JxTbI="; + hash = "sha256-ITXkdCyUtuFhgHHmy3P4ZX6GgzyxVUYz4knCCPHGClc="; }; postPatch = '' diff --git a/pkgs/development/libraries/imgui/default.nix b/pkgs/development/libraries/imgui/default.nix index 09b88c1a191ce..e5d4f54e9a006 100644 --- a/pkgs/development/libraries/imgui/default.nix +++ b/pkgs/development/libraries/imgui/default.nix @@ -139,7 +139,6 @@ stdenv.mkDerivation rec { license = lib.licenses.mit; # vcpkg licensed as MIT too maintainers = with lib.maintainers; [ SomeoneSerge - wolfangaukang ]; platforms = lib.platforms.all; }; diff --git a/pkgs/development/libraries/kirigami-addons/default.nix b/pkgs/development/libraries/kirigami-addons/default.nix index 8cefa310b61ac..403267a4eb56e 100644 --- a/pkgs/development/libraries/kirigami-addons/default.nix +++ b/pkgs/development/libraries/kirigami-addons/default.nix @@ -38,7 +38,7 @@ mkDerivation rec { homepage = "https://invent.kde.org/libraries/kirigami-addons"; # https://invent.kde.org/libraries/kirigami-addons/-/blob/b197d98fdd079b6fc651949bd198363872d1be23/src/treeview/treeviewplugin.cpp#L1-5 license = licenses.lgpl2Plus; - maintainers = with maintainers; [ samueldr matthiasbeyer ]; + maintainers = with maintainers; [ matthiasbeyer ]; }; } diff --git a/pkgs/development/libraries/kweathercore/default.nix b/pkgs/development/libraries/kweathercore/default.nix index 943dee42c0e93..6c957b6fc9e5d 100644 --- a/pkgs/development/libraries/kweathercore/default.nix +++ b/pkgs/development/libraries/kweathercore/default.nix @@ -29,7 +29,7 @@ mkDerivation rec { meta = with lib; { license = [ licenses.cc0 ]; - maintainers = [ maintainers.samueldr ]; + maintainers = [ ]; description = '' Library to facilitate retrieval of weather information including forecasts and alerts ''; diff --git a/pkgs/development/libraries/lensfun/default.nix b/pkgs/development/libraries/lensfun/default.nix index 7abf7fcacf6ed..82e519f6f100e 100644 --- a/pkgs/development/libraries/lensfun/default.nix +++ b/pkgs/development/libraries/lensfun/default.nix @@ -1,7 +1,7 @@ -{ lib, stdenv, fetchFromGitHub, fetchpatch, pkg-config, glib, zlib, libpng, cmake, libxml2, python3 }: +{ lib, stdenv, fetchFromGitHub, pkg-config, glib, zlib, libpng, cmake, libxml2, python3 }: let - version = "0.3.3"; + version = "0.3.4"; pname = "lensfun"; # Fetch a more recent version of the repo containing a more recent lens @@ -9,8 +9,8 @@ let lensfunDatabase = fetchFromGitHub { owner = "lensfun"; repo = "lensfun"; - rev = "ec9412d27d5fa8f377848a59c768b12c243cb80d"; - sha256 = "sha256-/u/3oQzac/dQrgFaiYvzT5uQ108XarkXnA2DByA5sic="; + rev = "a1510e6f33ce9bc8b5056a823c6d5bc6b8cba033"; + sha256 = "sha256-qdONyKk873Tq11M33JmznhJMAGd4dqp5KdXdVhfy/Ak="; }; in @@ -21,19 +21,11 @@ stdenv.mkDerivation { owner = "lensfun"; repo = "lensfun"; rev = "v${version}"; - sha256 = "0ixf0f7qv0mc7zrw9w1sb60w833g4rqrfj8cjxwzv2vimqcksccz"; + sha256 = "sha256-FyYilIz9ssSHG6S02Z2bXy7fjSY51+SWW3v8bm7sLvY="; }; - patches = [ - (fetchpatch { - name = "fix-compilation-with-clang.patch"; - url = "https://github.com/lensfun/lensfun/commit/5c2065685a22f19f8138365c0e5acf0be8329c02.patch"; - sha256 = "sha256-tAOCNL37pKE7hfQCu+hUTKLFnRHWF5Dplqf+GaucG+4="; - }) - ]; - # replace database with a more recent snapshot - # the mastr branch uses version 2 profiles, while 0.3.3 requires version 1 profiles, + # the master branch uses version 2 profiles, while 0.3.3 requires version 1 profiles, # so we run the conversion tool the project provides, # then untar the verson 1 profiles into the source dir before we build prePatch = '' @@ -45,17 +37,20 @@ stdenv.mkDerivation { ''; nativeBuildInputs = [ - cmake pkg-config - python3 python3.pkgs.lxml # For the db converison + cmake + pkg-config + python3 + python3.pkgs.setuptools + python3.pkgs.lxml # For the db converison ]; buildInputs = [ glib zlib libpng ]; - cmakeFlags = [ "-DINSTALL_HELPER_SCRIPTS=OFF" ]; + cmakeFlags = [ "-DINSTALL_HELPER_SCRIPTS=OFF" "-DCMAKE_BUILD_TYPE=RELEASE" ]; meta = with lib; { platforms = platforms.linux ++ platforms.darwin; - maintainers = with maintainers; [ flokli ]; + maintainers = with maintainers; [ flokli paperdigits ]; license = lib.licenses.lgpl3; description = "Opensource database of photographic lenses and their characteristics"; homepage = "https://lensfun.github.io"; diff --git a/pkgs/development/libraries/libadwaita/default.nix b/pkgs/development/libraries/libadwaita/default.nix index 7f7f93c37949d..449176cfd9e5e 100644 --- a/pkgs/development/libraries/libadwaita/default.nix +++ b/pkgs/development/libraries/libadwaita/default.nix @@ -14,6 +14,7 @@ , gtk4 , gnome , gsettings-desktop-schemas +, desktop-file-utils , xvfb-run , AppKit , Foundation @@ -47,6 +48,7 @@ stdenv.mkDerivation (finalAttrs: { sassc vala gobject-introspection + desktop-file-utils # for validate-desktop-file ]; mesonFlags = [ @@ -104,6 +106,11 @@ stdenv.mkDerivation (finalAttrs: { postFixup = '' # Cannot be in postInstall, otherwise _multioutDocs hook in preFixup will move right back. moveToOutput "share/doc" "$devdoc" + + # Put all resources related to demo app into devdoc output. + for d in applications icons metainfo; do + moveToOutput "share/$d" "$devdoc" + done ''; passthru = { diff --git a/pkgs/development/libraries/libdeltachat/Cargo.lock b/pkgs/development/libraries/libdeltachat/Cargo.lock index ae5294d3104f7..4f9efb6bec40c 100644 --- a/pkgs/development/libraries/libdeltachat/Cargo.lock +++ b/pkgs/development/libraries/libdeltachat/Cargo.lock @@ -17,9 +17,9 @@ dependencies = [ [[package]] name = "addr2line" -version = "0.21.0" +version = "0.22.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8a30b2e23b9e17a9f90641c7ab1549cd9b44f296d3ccbf309d2863cfe398a0cb" +checksum = "6e4503c46a5c0c7844e948c9a4d6acd9f50cccb4de1c48eb9e291ea17470c678" dependencies = [ "gimli", ] @@ -31,6 +31,17 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "f26201604c87b1e01bd3d98f8d5d9a8fcbb815e8cedb41ffccbeb4bf593a35fe" [[package]] +name = "aead" +version = "0.5.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "d122413f284cf2d62fb1b7db97e02edb8cda96d769b16e443a4f6195e35662b0" +dependencies = [ + "bytes", + "crypto-common", + "generic-array", +] + +[[package]] name = "aes" version = "0.8.4" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -55,9 +66,9 @@ dependencies = [ [[package]] name = "aho-corasick" -version = "1.1.2" +version = "1.1.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b2969dcb958b36655471fc61f7e416fa76033bdd4bfed0678d8fee1e2d07a1f0" +checksum = "8e60d3430d3a69478ad0993f19238d2df97c507009a52b3c10addcd7f6bcb916" dependencies = [ "memchr", ] @@ -114,16 +125,58 @@ dependencies = [ ] [[package]] +name = "anstream" +version = "0.6.13" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "d96bd03f33fe50a863e394ee9718a706f988b9079b20c3784fb726e7678b62fb" +dependencies = [ + "anstyle", + "anstyle-parse", + "anstyle-query", + "anstyle-wincon", + "colorchoice", + "utf8parse", +] + +[[package]] name = "anstyle" version = "1.0.6" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "8901269c6307e8d93993578286ac0edf7f195079ffff5ebdeea6a59ffb7e36bc" [[package]] +name = "anstyle-parse" +version = "0.2.3" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "c75ac65da39e5fe5ab759307499ddad880d724eed2f6ce5b5e8a26f4f387928c" +dependencies = [ + "utf8parse", +] + +[[package]] +name = "anstyle-query" +version = "1.0.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "e28923312444cdd728e4738b3f9c9cac739500909bb3d3c94b43551b16517648" +dependencies = [ + "windows-sys 0.52.0", +] + +[[package]] +name = "anstyle-wincon" +version = "3.0.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "1cd54b81ec8d6180e24654d0b371ad22fc3dd083b6ff8ba325b72e00c87660a7" +dependencies = [ + "anstyle", + "windows-sys 0.52.0", +] + +[[package]] name = "anyhow" -version = "1.0.80" +version = "1.0.86" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5ad32ce52e4161730f7098c077cd2ed6229b5804ccf99e5366be1ab72a98b4e1" +checksum = "b3d1d046238990b9cf5bcde22a3fb3584ee5cf65fb2765f454ed428c7a0063da" dependencies = [ "backtrace", ] @@ -152,8 +205,24 @@ version = "0.5.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "7f6fd5ddaf0351dff5b8da21b2fb4ff8e08ddd02857f0bf69c47639106c0fff0" dependencies = [ - "asn1-rs-derive", - "asn1-rs-impl", + "asn1-rs-derive 0.4.0", + "asn1-rs-impl 0.1.0", + "displaydoc", + "nom", + "num-traits", + "rusticata-macros", + "thiserror", + "time 0.3.34", +] + +[[package]] +name = "asn1-rs" +version = "0.6.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "22ad1373757efa0f70ec53939aabc7152e1591cb485208052993070ac8d2429d" +dependencies = [ + "asn1-rs-derive 0.5.0", + "asn1-rs-impl 0.2.0", "displaydoc", "nom", "num-traits", @@ -171,7 +240,19 @@ dependencies = [ "proc-macro2", "quote", "syn 1.0.109", - "synstructure", + "synstructure 0.12.6", +] + +[[package]] +name = "asn1-rs-derive" +version = "0.5.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "7378575ff571966e99a744addeff0bff98b8ada0dedf1956d59e634db95eaac1" +dependencies = [ + "proc-macro2", + "quote", + "syn 2.0.66", + "synstructure 0.13.1", ] [[package]] @@ -186,6 +267,29 @@ dependencies = [ ] [[package]] +name = "asn1-rs-impl" +version = "0.2.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "7b18050c2cd6fe86c3a76584ef5e0baf286d038cda203eb6223df2cc413565f7" +dependencies = [ + "proc-macro2", + "quote", + "syn 2.0.66", +] + +[[package]] +name = "async-broadcast" +version = "0.7.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "258b52a1aa741b9f09783b2d86cf0aeeb617bbf847f6933340a39644227acbdb" +dependencies = [ + "event-listener 5.2.0", + "event-listener-strategy", + "futures-core", + "pin-project-lite", +] + +[[package]] name = "async-channel" version = "1.9.0" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -198,12 +302,11 @@ dependencies = [ [[package]] name = "async-channel" -version = "2.2.0" +version = "2.3.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f28243a43d821d11341ab73c80bed182dc015c514b951616cf79bd4af39af0c3" +checksum = "89b47800b0be77592da0afd425cc03468052844aff33b84e33cc696f64e77b6a" dependencies = [ "concurrent-queue", - "event-listener 5.2.0", "event-listener-strategy", "futures-core", "pin-project-lite", @@ -228,7 +331,7 @@ version = "0.9.7" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "98892ebee4c05fc66757e600a7466f0d9bfcde338f645d64add323789f26cb36" dependencies = [ - "async-channel 2.2.0", + "async-channel 2.3.1", "base64 0.21.7", "bytes", "chrono", @@ -267,9 +370,9 @@ dependencies = [ [[package]] name = "async-smtp" -version = "0.9.0" +version = "0.9.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8709c0d4432be428a88a06746689a9cb543e8e27ef7f61ca4d0455003a3d8c5b" +checksum = "928ea96f04e1260036cb01f82c1e5dc7c3b478e7b9463c87712297784ce3cdc6" dependencies = [ "anyhow", "base64 0.13.1", @@ -290,7 +393,7 @@ checksum = "c980ee35e870bd1a4d2c8294d4c04d0499e67bca1e4b5cefcc693c2fa00caea9" dependencies = [ "proc-macro2", "quote", - "syn 2.0.52", + "syn 2.0.66", ] [[package]] @@ -308,6 +411,17 @@ dependencies = [ ] [[package]] +name = "attohttpc" +version = "0.24.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "8d9a9bf8b79a749ee0b911b91b671cc2b6c670bdbc7e3dfd537576ddc94bb2a2" +dependencies = [ + "http 0.2.12", + "log", + "url", +] + +[[package]] name = "autocfg" version = "1.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -315,9 +429,9 @@ checksum = "d468802bab17cbc0cc575e9b053f41e72aa36bfa6b7f55e3529ffa43161b97fa" [[package]] name = "axum" -version = "0.7.4" +version = "0.7.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1236b4b292f6c4d6dc34604bb5120d85c3fe1d1aa596bd5cc52ca054d13e7b9e" +checksum = "3a6c9af12842a67734c9a2e355436e5d03b22383ed60cf13cd0c18fbfe3dcbcf" dependencies = [ "async-trait", "axum-core", @@ -341,7 +455,7 @@ dependencies = [ "serde_path_to_error", "serde_urlencoded", "sha1", - "sync_wrapper", + "sync_wrapper 1.0.0", "tokio", "tokio-tungstenite", "tower", @@ -365,17 +479,28 @@ dependencies = [ "mime", "pin-project-lite", "rustversion", - "sync_wrapper", + "sync_wrapper 0.1.2", "tower-layer", "tower-service", "tracing", ] [[package]] +name = "backoff" +version = "0.4.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "b62ddb9cb1ec0a098ad4bbf9344d0713fa193ae1a80af55febcff2627b6a00c1" +dependencies = [ + "getrandom 0.2.12", + "instant", + "rand 0.8.5", +] + +[[package]] name = "backtrace" -version = "0.3.69" +version = "0.3.72" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2089b7e3f35b9dd2d0ed921ead4f6d318c27680d4a5bd167b3ee120edb105837" +checksum = "17c6a35df3749d2e8bb1b7b21a976d82b15548788d2735b9d82f329268f71a11" dependencies = [ "addr2line", "cc", @@ -423,6 +548,12 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "9d297deb1925b89f2ccc13d7635fa0714f12c87adce1c75356b39ca9b7178567" [[package]] +name = "base64" +version = "0.22.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "72b3254f16251a8381aa12e40e3c4d2f0199f8c6508fbecb9d91f575e0fbb8c6" + +[[package]] name = "base64ct" version = "1.6.0" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -456,6 +587,18 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "ed570934406eb16438a4e976b1b4500774099c13b8cb96eec99f620f05090ddf" [[package]] +name = "bitvec" +version = "1.0.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "1bc2832c24239b0141d5674bb9174f9d68a8b5b3f2753311927c172ca46f7e9c" +dependencies = [ + "funty", + "radium", + "tap", + "wyz", +] + +[[package]] name = "blake3" version = "1.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -506,10 +649,16 @@ dependencies = [ ] [[package]] +name = "bounded-integer" +version = "0.5.7" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "78a6932c88f1d2c29533a3b8a5f5a2f84cc19c3339b431677c3160c5c2e6ca85" + +[[package]] name = "brotli" -version = "3.4.0" +version = "6.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "516074a47ef4bce09577a3b379392300159ce5b1ba2e501ff1c819950066100f" +checksum = "74f7971dbd9326d58187408ab83117d8ac1bb9c17b085fdacd1cf2f598719b6b" dependencies = [ "alloc-no-stdlib", "alloc-stdlib", @@ -518,9 +667,9 @@ dependencies = [ [[package]] name = "brotli-decompressor" -version = "2.5.1" +version = "4.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4e2e4afe60d7dd600fdd3de8d0f08c2b7ec039712e3b6137ff98b7004e82de4f" +checksum = "e6221fe77a248b9117d431ad93761222e1cf8ff282d9d1d5d9f53d6299a1cf76" dependencies = [ "alloc-no-stdlib", "alloc-stdlib", @@ -568,6 +717,9 @@ name = "bytes" version = "1.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "a2bd12c1caf447e69cd4528f47f94d203fd2582878ecb9e9465484c4148a8223" +dependencies = [ + "serde", +] [[package]] name = "camellia" @@ -627,12 +779,9 @@ dependencies = [ [[package]] name = "cc" -version = "1.0.83" +version = "1.0.98" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f1174fb0b6ec23863f8b971027804a42614e347eafb0a95bf0b12cdae21fc4d0" -dependencies = [ - "libc", -] +checksum = "41c270e7540d725e65ac7f1b212ac8ce349719624d7bcff99f8e2e488e8cf03f" [[package]] name = "cfb-mode" @@ -650,6 +799,23 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "baf1de4339761588bc0619e3cbc0120ee582ebb74b53b4efbf79117bd2da40fd" [[package]] +name = "cfg_aliases" +version = "0.1.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "fd16c4719339c4530435d38e511904438d07cce7950afa3718a84ac36c10e89e" + +[[package]] +name = "chacha20" +version = "0.9.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "c3613f74bd2eac03dad61bd53dbe620703d4371614fe0bc3b9f04dd36fe4e818" +dependencies = [ + "cfg-if", + "cipher", + "cpufeatures", +] + +[[package]] name = "charset" version = "0.1.3" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -661,16 +827,17 @@ dependencies = [ [[package]] name = "chrono" -version = "0.4.34" +version = "0.4.38" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5bc015644b92d5890fab7489e49d21f879d5c990186827d42ec511919404f38b" +checksum = "a21f936df1771bf62b77f047b726c4625ff2e8aa607c01ec06e5a05bd8463401" dependencies = [ "android-tzdata", "iana-time-zone", "js-sys", "num-traits", + "serde", "wasm-bindgen", - "windows-targets 0.52.4", + "windows-targets 0.52.5", ] [[package]] @@ -708,6 +875,7 @@ checksum = "773f3b9af64447d2ce9850330c473515014aa235e6a783b02db81ff39e4a3dad" dependencies = [ "crypto-common", "inout", + "zeroize", ] [[package]] @@ -757,10 +925,16 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "3d7b894f5411737b7867f4827955924d7c254fc9f4d91a6aad6b097804b1018b" [[package]] +name = "colorchoice" +version = "1.0.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "acbf1af155f9b9ef647e42cdc158db4b64a1b61f743629225fde6f3e0be2a7c7" + +[[package]] name = "concurrent-queue" -version = "2.4.0" +version = "2.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d16048cd947b08fa32c24458a22f5dc5e835264f689f4f5653210c69fd107363" +checksum = "4ca0197aee26d1ae37445ee532fefce43251d24cc7c166799f4d46817f1d3973" dependencies = [ "crossbeam-utils", ] @@ -835,6 +1009,21 @@ dependencies = [ ] [[package]] +name = "crc" +version = "3.2.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "69e6e4d7b33a94f0991c26729976b10ebde1d34c3ee82408fb536164fa10d636" +dependencies = [ + "crc-catalog", +] + +[[package]] +name = "crc-catalog" +version = "2.4.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "19d374276b40fb8bbdee95aef7c7fa6b5316ec764510eb64b8dd0e2ed0d7e7f5" + +[[package]] name = "crc24" version = "0.1.6" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -949,10 +1138,43 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "1bfb12502f3fc46cca1bb51ac28df9d618d813cdc3d2f25b9fe775a34af26bb3" dependencies = [ "generic-array", + "rand_core 0.6.4", "typenum", ] [[package]] +name = "crypto_box" +version = "0.9.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "16182b4f39a82ec8a6851155cc4c0cda3065bb1db33651726a29e1951de0f009" +dependencies = [ + "aead", + "chacha20", + "crypto_secretbox", + "curve25519-dalek 4.1.2", + "salsa20", + "serdect", + "subtle", + "zeroize", +] + +[[package]] +name = "crypto_secretbox" +version = "0.1.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "b9d6cf87adf719ddf43a805e92c6870a531aedda35ff640442cbaf8674e141e1" +dependencies = [ + "aead", + "chacha20", + "cipher", + "generic-array", + "poly1305", + "salsa20", + "subtle", + "zeroize", +] + +[[package]] name = "curve25519-dalek" version = "3.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -990,7 +1212,7 @@ checksum = "f46882e17999c6cc590af592290432be3bce0428cb0d5f8b6715e4dc7b383eb3" dependencies = [ "proc-macro2", "quote", - "syn 2.0.52", + "syn 2.0.66", ] [[package]] @@ -1064,10 +1286,23 @@ dependencies = [ ] [[package]] +name = "dashmap" +version = "5.5.3" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "978747c1d849a7d2ee5e8adc0159961c48fb7e5db2f06af6723b80123bb53856" +dependencies = [ + "cfg-if", + "hashbrown", + "lock_api", + "once_cell", + "parking_lot_core", +] + +[[package]] name = "data-encoding" -version = "2.5.0" +version = "2.6.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7e962a19be5cfc3f3bf6dd8f61eb50107f356ad6270fbb3ed41476571db78be5" +checksum = "e8566979429cf69b49a5c740c60791108e86440e8be149bbea4fe54d2c32d6e2" [[package]] name = "default-net" @@ -1075,33 +1310,35 @@ version = "0.14.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "a4898b43aed56499fad6b294d15b3e76a51df68079bf492e5daae38ca084e003" dependencies = [ - "dlopen2", + "dlopen2 0.4.1", "libc", "memalloc", - "netlink-packet-core", - "netlink-packet-route", + "netlink-packet-core 0.5.0", + "netlink-packet-route 0.15.0", "netlink-sys", "once_cell", - "system-configuration", - "windows", + "system-configuration 0.5.1", + "windows 0.32.0", ] [[package]] name = "deltachat" -version = "1.136.3" +version = "1.140.2" dependencies = [ "ansi_term", "anyhow", - "async-channel 2.2.0", + "async-broadcast", + "async-channel 2.3.1", "async-imap", "async-native-tls", "async-smtp", "async_zip", "backtrace", - "base64 0.21.7", + "base64 0.22.1", "brotli", "chrono", "criterion", + "deltachat-contact-tools", "deltachat-time", "deltachat_derive", "email", @@ -1111,12 +1348,14 @@ dependencies = [ "fd-lock", "format-flowed", "futures", - "futures-lite", + "futures-lite 2.3.0", "hex", "hickory-resolver", "humansize", "image", "iroh", + "iroh-gossip", + "iroh-net", "kamadak-exif", "lettre_email", "libc", @@ -1127,21 +1366,19 @@ dependencies = [ "num-traits", "num_cpus", "once_cell", - "openssl-src", "parking_lot", "percent-encoding", "pgp", - "pin-project", "pretty_assertions", - "pretty_env_logger", "proptest", "qrcodegen", "quick-xml", + "quinn", "quoted_printable", "rand 0.8.5", "ratelimit", "regex", - "reqwest", + "reqwest 0.11.27", "rusqlite", "rust-hsluv", "sanitize-filename", @@ -1168,14 +1405,26 @@ dependencies = [ ] [[package]] +name = "deltachat-contact-tools" +version = "0.0.0" +dependencies = [ + "anyhow", + "chrono", + "once_cell", + "regex", + "rusqlite", +] + +[[package]] name = "deltachat-jsonrpc" -version = "1.136.3" +version = "1.140.2" dependencies = [ "anyhow", - "async-channel 2.2.0", + "async-channel 2.3.1", "axum", - "base64 0.21.7", + "base64 0.22.1", "deltachat", + "deltachat-contact-tools", "env_logger", "futures", "log", @@ -1193,33 +1442,33 @@ dependencies = [ [[package]] name = "deltachat-repl" -version = "1.136.3" +version = "1.140.2" dependencies = [ "ansi_term", "anyhow", "deltachat", "dirs", "log", - "pretty_env_logger", "rusqlite", "rustyline", "tokio", + "tracing-subscriber", ] [[package]] name = "deltachat-rpc-server" -version = "1.136.3" +version = "1.140.2" dependencies = [ "anyhow", "deltachat", "deltachat-jsonrpc", - "env_logger", - "futures-lite", + "futures-lite 2.3.0", "log", "serde", "serde_json", "tokio", "tokio-util", + "tracing-subscriber", "yerpc", ] @@ -1232,12 +1481,12 @@ name = "deltachat_derive" version = "2.0.0" dependencies = [ "quote", - "syn 2.0.52", + "syn 2.0.66", ] [[package]] name = "deltachat_ffi" -version = "1.136.3" +version = "1.140.2" dependencies = [ "anyhow", "deltachat", @@ -1260,7 +1509,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "f1a467a65c5e759bce6e65eaf91cc29f466cdc57cb65777bd646872a8a1fd4de" dependencies = [ "const-oid", - "der_derive", + "der_derive 0.6.1", "pem-rfc7468 0.6.0", "zeroize", ] @@ -1272,6 +1521,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "fffa369a668c8af7dbf8b5e56c9f744fbd399949ed171606040001947de40b1c" dependencies = [ "const-oid", + "der_derive 0.7.2", "pem-rfc7468 0.7.0", "zeroize", ] @@ -1282,7 +1532,21 @@ version = "8.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "dbd676fbbab537128ef0278adb5576cf363cff6aa22a7b24effe97347cfab61e" dependencies = [ - "asn1-rs", + "asn1-rs 0.5.2", + "displaydoc", + "nom", + "num-bigint", + "num-traits", + "rusticata-macros", +] + +[[package]] +name = "der-parser" +version = "9.0.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "5cd0a5c643689626bec213c4d8bd4d96acc8ffdb4ad4bb6bc16abf27d5f4b553" +dependencies = [ + "asn1-rs 0.6.1", "displaydoc", "nom", "num-bigint", @@ -1303,12 +1567,24 @@ dependencies = [ ] [[package]] +name = "der_derive" +version = "0.7.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "5fe87ce4529967e0ba1dcf8450bab64d97dfd5010a6256187ffe2e43e6f0e049" +dependencies = [ + "proc-macro2", + "quote", + "syn 2.0.66", +] + +[[package]] name = "deranged" version = "0.3.11" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "b42b6fa04a440b495c8b04d0e71b707c585f83cb9cb28cf8cd0d976c315e31b4" dependencies = [ "powerfmt", + "serde", ] [[package]] @@ -1356,6 +1632,27 @@ dependencies = [ ] [[package]] +name = "derive_more" +version = "1.0.0-beta.6" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "f7abbfc297053be59290e3152f8cbcd52c8642e0728b69ee187d991d4c1af08d" +dependencies = [ + "derive_more-impl", +] + +[[package]] +name = "derive_more-impl" +version = "1.0.0-beta.6" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "2bba3e9872d7c58ce7ef0fcf1844fcc3e23ef2a58377b50df35dd98e42a5726e" +dependencies = [ + "proc-macro2", + "quote", + "syn 2.0.66", + "unicode-xid", +] + +[[package]] name = "des" version = "0.8.1" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -1441,7 +1738,7 @@ checksum = "487585f4d0c6655fe74905e2504d8ad6908e4db67f744eb140876906c2f3175d" dependencies = [ "proc-macro2", "quote", - "syn 2.0.52", + "syn 2.0.66", ] [[package]] @@ -1457,6 +1754,17 @@ dependencies = [ ] [[package]] +name = "dlopen2" +version = "0.5.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "09b4f5f101177ff01b8ec4ecc81eead416a8aa42819a2869311b3420fa114ffa" +dependencies = [ + "libc", + "once_cell", + "winapi", +] + +[[package]] name = "dlopen2_derive" version = "0.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -1484,6 +1792,24 @@ dependencies = [ ] [[package]] +name = "dtoa" +version = "1.0.9" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "dcbb2bf8e87535c23f7a8a321e364ce21462d0ff10cb6407820e8e96dfff6653" + +[[package]] +name = "duct" +version = "0.13.7" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "e4ab5718d1224b63252cd0c6f74f6480f9ffeb117438a2e0f5cf6d9a4798929c" +dependencies = [ + "libc", + "once_cell", + "os_pipe", + "shared_child", +] + +[[package]] name = "dyn-clone" version = "1.0.17" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -1532,6 +1858,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "115531babc129696a58c64a4fef0a8bf9e9698629fb97e9e40767d235cfbcd53" dependencies = [ "pkcs8 0.10.2", + "serde", "signature 2.2.0", ] @@ -1558,6 +1885,7 @@ checksum = "4a3daa8e81a3963a60642bcc1f90a670680bd4a77535faa384e9d1c79d620871" dependencies = [ "curve25519-dalek 4.1.2", "ed25519 2.2.3", + "rand_core 0.6.4", "serde", "sha2 0.10.8", "subtle", @@ -1750,7 +2078,7 @@ dependencies = [ "heck", "proc-macro2", "quote", - "syn 2.0.52", + "syn 2.0.66", ] [[package]] @@ -1763,20 +2091,50 @@ dependencies = [ "num-traits", "proc-macro2", "quote", - "syn 2.0.52", + "syn 2.0.66", +] + +[[package]] +name = "enumflags2" +version = "0.7.9" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "3278c9d5fb675e0a51dabcf4c0d355f692b064171535ba72361be1528a9d8e8d" +dependencies = [ + "enumflags2_derive", +] + +[[package]] +name = "enumflags2_derive" +version = "0.7.9" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "5c785274071b1b420972453b306eeca06acf4633829db4223b58a2a8c5953bc4" +dependencies = [ + "proc-macro2", + "quote", + "syn 2.0.66", +] + +[[package]] +name = "env_filter" +version = "0.1.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "a009aa4810eb158359dda09d0c87378e4bbb89b5a801f016885a4707ba24f7ea" +dependencies = [ + "log", + "regex", ] [[package]] name = "env_logger" -version = "0.10.2" +version = "0.11.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4cd405aab171cb85d6735e5c8d9db038c17d3ca007a4d2c25f337935c3d90580" +checksum = "38b35839ba51819680ba087cd351788c9a3c476841207e0b8cee0b04722343b9" dependencies = [ + "anstream", + "anstyle", + "env_filter", "humantime", - "is-terminal", "log", - "regex", - "termcolor", ] [[package]] @@ -1786,6 +2144,21 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "5443807d6dff69373d433ab9ef5378ad8df50ca6298caf15de6e52e24aaf54d5" [[package]] +name = "erased-serde" +version = "0.3.31" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "6c138974f9d5e7fe373eb04df7cae98833802ae4b11c24ac7039a21d5af4b26c" +dependencies = [ + "serde", +] + +[[package]] +name = "erased_set" +version = "0.7.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "76a5aa24577083f8190ad401e376b55887c7cd9083ae95d83ceec5d28ea78125" + +[[package]] name = "errno" version = "0.3.8" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -1818,6 +2191,17 @@ checksum = "0206175f82b8d6bf6652ff7d71a1e27fd2e4efde587fd368662814d6ec1d9ce0" [[package]] name = "event-listener" +version = "4.0.3" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "67b215c49b2b248c855fb73579eb1f4f26c38ffdc12973e20e07b91d78d5646e" +dependencies = [ + "concurrent-queue", + "parking", + "pin-project-lite", +] + +[[package]] +name = "event-listener" version = "5.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "2b5fb89194fa3cad959b833185b3063ba881dbfc7030680b314250779fb4cc91" @@ -1829,9 +2213,9 @@ dependencies = [ [[package]] name = "event-listener-strategy" -version = "0.5.0" +version = "0.5.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "feedafcaa9b749175d5ac357452a9d41ea2911da598fde46ce1fe02c37751291" +checksum = "0f214dc438f977e6d4e3500aaa277f5ad94ca83fbbd9b1a15713ce2344ccc5a1" dependencies = [ "event-listener 5.2.0", "pin-project-lite", @@ -1851,9 +2235,9 @@ checksum = "7360491ce676a36bf9bb3c56c1aa791658183a54d2744120f27285738d90465a" [[package]] name = "fast-socks5" -version = "0.9.5" +version = "0.9.6" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "cbcc731f3c17a5053e07e6a2290918da75cd8b9b1217b419721f715674ac520c" +checksum = "f89f36d4ee12370d30d57b16c7e190950a1a916e7dbbb5fd5a412f5ef913fe84" dependencies = [ "anyhow", "async-trait", @@ -1874,6 +2258,15 @@ dependencies = [ [[package]] name = "fastrand" +version = "1.9.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "e51093e27b0797c359783294ca4f0a911c270184cb10f85783b118614a1501be" +dependencies = [ + "instant", +] + +[[package]] +name = "fastrand" version = "2.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "25cbce373ec4653f1a01a31e8a5e5ec0c622dc27ff9c4e6606eefef5cbbed4a5" @@ -1993,6 +2386,12 @@ name = 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"51ee14e256b9143bfafbf2fddeede6f396650bacf95d06fc1b3f2b503df129a0" +dependencies = [ + "bitvec", + "futures-core", + "futures-lite 1.13.0", + "pin-project", + "slab", + "smallvec", +] + +[[package]] name = "futures-core" version = "0.3.30" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -2042,11 +2466,26 @@ checksum = "a44623e20b9681a318efdd71c299b6b222ed6f231972bfe2f224ebad6311f0c1" [[package]] name = "futures-lite" -version = "2.2.0" +version = "1.13.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "445ba825b27408685aaecefd65178908c36c6e96aaf6d8599419d46e624192ba" +checksum = "49a9d51ce47660b1e808d3c990b4709f2f415d928835a17dfd16991515c46bce" dependencies = [ - "fastrand", + "fastrand 1.9.0", + "futures-core", + "futures-io", + "memchr", + "parking", + "pin-project-lite", + "waker-fn", +] + +[[package]] +name = "futures-lite" +version = "2.3.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "52527eb5074e35e9339c6b4e8d12600c7128b68fb25dcb9fa9dec18f7c25f3a5" +dependencies = [ + "fastrand 2.0.1", "futures-core", "futures-io", "parking", @@ -2061,7 +2500,7 @@ checksum = "87750cf4b7a4c0625b1529e4c543c2182106e4dedc60a2a6455e00d212c489ac" dependencies = [ "proc-macro2", "quote", - "syn 2.0.52", + "syn 2.0.66", ] [[package]] @@ -2077,6 +2516,12 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "38d84fa142264698cdce1a9f9172cf383a0c82de1bddcf3092901442c4097004" [[package]] +name = "futures-timer" +version = "3.0.3" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "f288b0a4f20f9a56b5d1da57e2227c661b7b16168e2f72365f57b63326e29b24" + +[[package]] name = "futures-util" version = "0.3.30" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -2095,6 +2540,22 @@ dependencies = [ ] [[package]] +name = "genawaiter" +version = "0.99.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "c86bd0361bcbde39b13475e6e36cb24c329964aa2611be285289d1e4b751c1a0" +dependencies = [ + "futures-core", + "genawaiter-macro", +] + +[[package]] +name = "genawaiter-macro" +version = "0.99.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "0b32dfe1fdfc0bbde1f22a5da25355514b5e450c33a6af6770884c8750aedfbc" + +[[package]] name = "generic-array" version = "0.14.7" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -2141,9 +2602,35 @@ dependencies = [ [[package]] name = "gimli" -version = "0.28.1" +version = "0.29.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4271d37baee1b8c7e4b708028c57d816cf9d2434acb33a549475f78c181f6253" +checksum = "40ecd4077b5ae9fd2e9e169b102c6c330d0605168eb0e8bf79952b256dbefffd" + +[[package]] +name = "glob" +version = "0.3.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "d2fabcfbdc87f4758337ca535fb41a6d701b65693ce38287d856d1674551ec9b" + +[[package]] +name = "governor" +version = "0.6.3" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "68a7f542ee6b35af73b06abc0dad1c1bae89964e4e253bc4b587b91c9637867b" +dependencies = [ + "cfg-if", + "dashmap", + "futures", + "futures-timer", + "no-std-compat", + "nonzero_ext", + "parking_lot", + "portable-atomic", + "quanta", + "rand 0.8.5", + "smallvec", + "spinning_top", +] [[package]] name = "group" @@ -2169,9 +2656,9 @@ dependencies = [ [[package]] name = "h2" -version = "0.3.24" +version = "0.3.26" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "bb2c4422095b67ee78da96fbb51a4cc413b3b25883c7717ff7ca1ab31022c9c9" +checksum = "81fe527a889e1532da5c525686d96d4c2e74cdd345badf8dfef9f6b39dd5f5e8" dependencies = [ "bytes", "fnv", @@ -2187,25 +2674,6 @@ dependencies = [ ] [[package]] -name = "h2" -version = "0.4.2" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = 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"hmac", + "sha1", +] + +[[package]] +name = "hmac-sha256" +version = "1.1.7" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "3688e69b38018fec1557254f64c8dc2cc8ec502890182f395dbb0aa997aa5735" + +[[package]] name = "home" version = "0.5.9" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -2336,6 +2820,12 @@ dependencies = [ ] [[package]] +name = "hostname-validator" +version = "1.1.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "f558a64ac9af88b5ba400d99b579451af0d39c6d360980045b91aac966d705e2" + +[[package]] name = "http" version = "0.2.12" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -2405,9 +2895,9 @@ checksum = "df3b46402a9d5adb4c86a0cf463f42e19994e3ee891101b1841f30a545cb49a9" [[package]] name = "human-panic" -version = "1.2.3" +version = "2.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = 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"registry+https://github.com/rust-lang/crates.io-index" +checksum = "064d90fec10d541084e7b39ead8875a5a80d9114a2b18791565253bae25f49e4" +dependencies = [ + "async-trait", + "attohttpc", + "bytes", + "futures", + "http 0.2.12", + "hyper 0.14.28", + "log", + "rand 0.8.5", + "tokio", + "url", + "xmltree", +] + +[[package]] name = "image" -version = "0.24.9" +version = "0.25.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5690139d2f55868e080017335e4b94cb7414274c74f1669c84fb5feba2c9f69d" +checksum = "fd54d660e773627692c524beaad361aca785a4f9f5730ce91f42aabe5bce3d11" dependencies = [ "bytemuck", "byteorder", "color_quant", "gif", - "jpeg-decoder", + "image-webp", "num-traits", "png", + "zune-core", + "zune-jpeg", +] + +[[package]] +name = "image-webp" +version = "0.1.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "7a84a25dcae3ac487bc24ef280f9e20c79c9b1a3e5e32cbed3041d1c514aa87c" +dependencies = [ + "byteorder", + "thiserror", ] [[package]] name = "imap-proto" -version = "0.16.4" +version = "0.16.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "22e70cd66882c8cb1c9802096ba75212822153c51478dc61621e1a22f6c92361" +checksum = "de555d9526462b6f9ece826a26fb7c67eca9a0245bd9ff84fa91972a5d5d8856" dependencies = [ "nom", ] @@ -2607,6 +3163,15 @@ dependencies = [ ] [[package]] +name = "instant" +version = "0.1.12" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "7a5bbe824c507c5da5956355e86a746d82e0e1464f65d862cc5e71da70e94b2c" +dependencies = [ + "cfg-if", +] + +[[package]] name = "ipconfig" version = "0.3.2" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -2615,7 +3180,7 @@ dependencies = [ "socket2", "widestring", "windows-sys 0.48.0", - "winreg", + "winreg 0.50.0", ] [[package]] @@ -2637,7 +3202,7 @@ dependencies = [ "bytes", "default-net", "der 0.6.1", - "derive_more", + "derive_more 0.99.17", "dirs-next", "ed25519-dalek 1.0.1", 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0.21.11", + "thiserror", + "tokio", + "tracing", +] + +[[package]] +name = "iroh-quinn-proto" +version = "0.10.8" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "c6bf92478805e67f2320459285496e1137edf5171411001a0d4d85f9bbafb792" +dependencies = [ + "bytes", + "rand 0.8.5", + "ring 0.17.8", + "rustc-hash", + "rustls 0.21.11", + "rustls-native-certs", + "slab", + "thiserror", + "tinyvec", + "tracing", +] + +[[package]] +name = "iroh-quinn-udp" +version = "0.4.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "edc7915b3a31f08ee0bc02f73f4d61a5d5be146a1081ef7f70622a11627fd314" +dependencies = [ + "bytes", + "libc", + "socket2", + "tracing", + "windows-sys 0.48.0", +] + +[[package]] name = "is-terminal" version = "0.4.12" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -2701,12 +3479,6 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = 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= "3da03d5980411a724e8aaf7b61a7b5e386ec55a7fb49ee3d0ff79efc7e5e7c7e" dependencies = [ "charset", "data-encoding", @@ -2895,6 +3667,12 @@ dependencies = [ ] [[package]] +name = "md5" +version = "0.7.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "490cc448043f947bae3cbee9c203358d62dbee0db12107a74be5c30ccfd09771" + +[[package]] name = "memalloc" version = "0.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -2973,6 +3751,23 @@ dependencies = [ ] [[package]] +name = "netdev" +version = "0.25.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "fb353f5a5a852d5cc779c1c80bec0bd14a696ef832f3a761cb10091802c37109" +dependencies = [ + "dlopen2 0.5.0", + "libc", + "memalloc", + "netlink-packet-core 0.7.0", + "netlink-packet-route 0.17.1", + "netlink-sys", + "once_cell", + "system-configuration 0.6.0", + "windows 0.54.0", +] + +[[package]] name = "netlink-packet-core" version = "0.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -2985,6 +3780,17 @@ dependencies = [ ] [[package]] +name = "netlink-packet-core" +version = "0.7.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "72724faf704479d67b388da142b186f916188505e7e0b26719019c525882eda4" +dependencies = [ + "anyhow", + "byteorder", + "netlink-packet-utils", +] + +[[package]] name = "netlink-packet-route" version = "0.15.0" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -2994,7 +3800,21 @@ dependencies = [ "bitflags 1.3.2", "byteorder", "libc", - "netlink-packet-core", + "netlink-packet-core 0.5.0", + "netlink-packet-utils", +] + +[[package]] +name = "netlink-packet-route" +version = "0.17.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "053998cea5a306971f88580d0829e90f270f940befd7cf928da179d4187a5a66" +dependencies = [ + "anyhow", + "bitflags 1.3.2", + "byteorder", + "libc", + "netlink-packet-core 0.7.0", "netlink-packet-utils", ] @@ -3011,14 +3831,31 @@ dependencies = [ ] [[package]] +name = "netlink-proto" +version = "0.11.3" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "86b33524dc0968bfad349684447bfce6db937a9ac3332a1fe60c0c5a5ce63f21" +dependencies = [ + "bytes", + "futures", + "log", + "netlink-packet-core 0.7.0", + "netlink-sys", + "thiserror", + "tokio", +] + +[[package]] name = "netlink-sys" version = "0.8.5" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "6471bf08e7ac0135876a9581bf3217ef0333c191c128d34878079f42ee150411" dependencies = [ "bytes", + "futures", "libc", "log", + "tokio", ] [[package]] @@ -3032,16 +3869,40 @@ dependencies = [ [[package]] name = "nix" -version = "0.27.1" +version = "0.26.4" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "598beaf3cc6fdd9a5dfb1630c2800c7acd31df7aaf0f565796fba2b53ca1af1b" +dependencies = [ + "bitflags 1.3.2", + "cfg-if", + "libc", +] + +[[package]] +name = "nix" +version = "0.28.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2eb04e9c688eff1c89d72b407f168cf79bb9e867a9d3323ed6c01519eb9cc053" +checksum = "ab2156c4fce2f8df6c499cc1c763e4394b7482525bf2a9701c9d79d215f519e4" dependencies = [ "bitflags 2.4.2", "cfg-if", + "cfg_aliases", "libc", ] [[package]] +name = "no-std-compat" +version = "0.4.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "b93853da6d84c2e3c7d730d6473e8817692dd89be387eb01b94d7f108ecb5b8c" + +[[package]] +name = "no-std-net" +version = "0.6.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "43794a0ace135be66a25d3ae77d41b91615fb68ae937f904090203e81f755b65" + +[[package]] name = "nom" version = "7.1.3" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -3052,6 +3913,12 @@ dependencies = [ ] [[package]] +name = "nonzero_ext" +version = "0.3.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "38bf9645c8b145698bb0b18a4637dcacbc421ea49bef2317e4fd8065a387cf21" + +[[package]] name = "ntapi" version = "0.4.1" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -3113,7 +3980,7 @@ checksum = "ed3955f1a9c7c0c15e092f9c887db08b1fc683305fdf6eb6684f22555355e202" dependencies = [ "proc-macro2", "quote", - "syn 2.0.52", + "syn 2.0.66", ] [[package]] @@ -3138,9 +4005,9 @@ dependencies = [ [[package]] name = "num-traits" -version = "0.2.18" +version = "0.2.19" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "da0df0e5185db44f69b44f26786fe401b6c293d1907744beaa7fa62b2e5a517a" +checksum = "071dfc062690e90b734c0b2273ce72ad0ffa95f0c74596bc250dcfd960262841" dependencies = [ "autocfg", "libm", @@ -3174,14 +4041,14 @@ dependencies = [ "proc-macro-crate", "proc-macro2", "quote", - "syn 2.0.52", + "syn 2.0.66", ] [[package]] name = "object" -version = "0.32.2" +version = "0.35.0" source = 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"2.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -3344,9 +4244,9 @@ checksum = "bb813b8af86854136c6922af0598d719255ecb2179515e6e7730d468f05c9cae" [[package]] name = "parking_lot" -version = "0.12.1" +version = "0.12.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3742b2c103b9f06bc9fff0a37ff4912935851bee6d36f3c02bcc755bcfec228f" +checksum = "f1bf18183cf54e8d6059647fc3063646a1801cf30896933ec2311622cc4b9a27" dependencies = [ "lock_api", "parking_lot_core", @@ -3381,6 +4281,16 @@ dependencies = [ ] [[package]] +name = "pem" +version = "3.0.4" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "8e459365e590736a54c3fa561947c84837534b8e9af6fc5bf781307e82658fae" +dependencies = [ + "base64 0.22.1", + "serde", +] + +[[package]] name = "pem-rfc7468" version = "0.6.0" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -3405,6 +4315,51 @@ source = 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dependencies = [ "proc-macro2", "quote", - "syn 2.0.52", + "syn 2.0.66", ] [[package]] @@ -3493,6 +4448,23 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "8b870d8c151b6f2fb93e84a13146138f05d02ed11c7e7c54f8826aaaf7c9f184" [[package]] +name = "pkarr" +version = "1.1.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "242ae92dfb9d2ba3aaa9caf4723e72043bc50729ad05a763771771ba03196ffb" +dependencies = [ + "bytes", + "ed25519-dalek 2.1.1", + "rand 0.8.5", + "reqwest 0.11.27", + "self_cell", + "simple-dns", + "thiserror", + "url", + "z32", +] + +[[package]] name = "pkcs1" version = "0.4.1" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -3576,6 +4548,48 @@ dependencies = [ ] [[package]] +name = "pnet_base" +version = "0.34.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "fe4cf6fb3ab38b68d01ab2aea03ed3d1132b4868fa4e06285f29f16da01c5f4c" +dependencies = [ + "no-std-net", +] + +[[package]] +name = "pnet_macros" +version = "0.34.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "688b17499eee04a0408aca0aa5cba5fc86401d7216de8a63fdf7a4c227871804" +dependencies = [ + "proc-macro2", + "quote", + "regex", + "syn 2.0.66", +] + +[[package]] +name = "pnet_macros_support" +version = "0.34.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "eea925b72f4bd37f8eab0f221bbe4c78b63498350c983ffa9dd4bcde7e030f56" +dependencies = [ + "pnet_base", +] + +[[package]] +name = "pnet_packet" +version = "0.34.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "a9a005825396b7fe7a38a8e288dbc342d5034dac80c15212436424fef8ea90ba" +dependencies = [ + "glob", + "pnet_base", + "pnet_macros", + "pnet_macros_support", +] + +[[package]] name = "png" version = "0.17.13" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -3589,6 +4603,17 @@ dependencies = [ ] [[package]] +name = "poly1305" 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-version = "0.5.0" +name = "precis-profiles" +version = "0.1.10" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "865724d4dbe39d9f3dd3b52b88d859d66bcb2d6a0acfd5ea68a65fb66d4bdc1c" +checksum = "bde4bd6624c60cb0abe2bea1dbdbb9085f629a853861e64df4abb099f8076ad4" dependencies = [ - "env_logger", - "log", + "lazy_static", + "precis-core", + "precis-tools", + "unicode-normalization", +] + +[[package]] +name = "precis-tools" +version = "0.1.7" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "d07ecadec70b0f560f09abf815ae0ee1a940d38d2354c938ba7229ac7c9f5f52" +dependencies = [ + "lazy_static", + "regex", + "ucd-parse", +] + +[[package]] +name = "pretty_assertions" +version = "1.4.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "af7cee1a6c8a5b9208b3cb1061f10c0cb689087b3d8ce85fb9d2dd7a29b6ba66" +dependencies = [ + "diff", + "yansi", ] [[package]] @@ -3694,14 +4743,37 @@ dependencies = [ [[package]] name = "proc-macro2" -version = "1.0.78" +version = "1.0.85" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e2422ad645d89c99f8f3e6b88a9fdeca7fabeac836b1002371c4367c8f984aae" +checksum = "22244ce15aa966053a896d1accb3a6e68469b97c7f33f284b99f0d576879fc23" dependencies = [ "unicode-ident", ] [[package]] +name = "prometheus-client" +version = "0.22.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "c1ca959da22a332509f2a73ae9e5f23f9dcfc31fd3a54d71f159495bd5909baa" +dependencies = [ + "dtoa", + "itoa", + "parking_lot", + "prometheus-client-derive-encode", +] + +[[package]] +name = "prometheus-client-derive-encode" +version = "0.4.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "440f724eba9f6996b75d63681b0a92b06947f1457076d503a4d2e2c8f56442b8" +dependencies = [ + "proc-macro2", + "quote", + "syn 2.0.66", +] + +[[package]] name = "proptest" version = "1.4.0" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -3724,6 +4796,21 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "4339fc7a1021c9c1621d87f5e3505f2805c8c105420ba2f2a4df86814590c142" [[package]] +name = "quanta" +version = "0.12.3" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "8e5167a477619228a0b284fac2674e3c388cba90631d7b7de620e6f1fcd08da5" +dependencies = [ + "crossbeam-utils", + "libc", + "once_cell", + "raw-cpuid", + "wasi 0.11.0+wasi-snapshot-preview1", + "web-sys", + "winapi", +] + +[[package]] name = "quic-rpc" version = "0.6.2" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -3768,7 +4855,7 @@ dependencies = [ "quinn-proto", "quinn-udp", "rustc-hash", - "rustls", + "rustls 0.21.11", "thiserror", "tokio", "tracing", @@ -3784,7 +4871,7 @@ dependencies = [ "rand 0.8.5", "ring 0.16.20", "rustc-hash", - "rustls", + "rustls 0.21.11", "rustls-native-certs", "slab", "thiserror", @@ -3807,20 +4894,36 @@ dependencies = [ [[package]] name = "quote" -version = "1.0.35" +version = "1.0.36" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "291ec9ab5efd934aaf503a6466c5d5251535d108ee747472c3977cc5acc868ef" +checksum = "0fa76aaf39101c457836aec0ce2316dbdc3ab723cdda1c6bd4e6ad4208acaca7" dependencies = [ "proc-macro2", ] [[package]] +name = "quoted-string-parser" +version = "0.1.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "0dc75379cdb451d001f1cb667a9f74e8b355e9df84cc5193513cbe62b96fc5e9" +dependencies = [ + "pest", + "pest_derive", +] + +[[package]] name = "quoted_printable" version = "0.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "79ec282e887b434b68c18fe5c121d38e72a5cf35119b59e54ec5b992ea9c8eb0" [[package]] +name = "radium" +version = "0.7.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "dc33ff2d4973d518d823d61aa239014831e521c75da58e3df4840d3f47749d09" + +[[package]] name = "radix_trie" version = "0.2.1" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -3915,6 +5018,15 @@ name = "ratelimit" version = "1.0.0" [[package]] +name = "raw-cpuid" +version = "11.0.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "e29830cbb1290e404f24c73af91c5d8d631ce7e128691e9477556b540cd01ecd" +dependencies = [ + "bitflags 2.4.2", +] + +[[package]] name = "rayon" version = "1.9.0" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -3940,13 +5052,25 @@ version = "0.10.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "ffbe84efe2f38dea12e9bfc1f65377fdf03e53a18cb3b995faedf7934c7e785b" dependencies = [ - "pem", + "pem 1.1.1", "ring 0.16.20", "time 0.3.34", "yasna", ] [[package]] +name = "rcgen" +version = "0.12.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "48406db8ac1f3cbc7dcdb56ec355343817958a356ff430259bb07baf7607e1e1" +dependencies = [ + "pem 3.0.4", + "ring 0.17.8", + "time 0.3.34", + "yasna", +] + +[[package]] name = "redox_syscall" version = "0.3.5" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -3977,9 +5101,9 @@ dependencies = [ [[package]] name = "regex" -version = "1.10.3" +version = "1.10.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b62dbe01f0b06f9d8dc7d49e05a0785f153b00b2c227856282f671e0318c9b15" +checksum = "c117dbdfde9c8308975b6a18d71f3f385c89461f7b3fb054288ecf2a2058ba4c" dependencies = [ "aho-corasick", "memchr", @@ -4008,6 +5132,12 @@ dependencies = [ ] [[package]] +name = "regex-lite" +version = "0.1.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "30b661b2f27137bdbc16f00eda72866a92bb28af1753ffbd56744fb6e2e9cd8e" + +[[package]] name = "regex-syntax" version = "0.6.29" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -4021,19 +5151,20 @@ checksum = "c08c74e62047bb2de4ff487b251e4a92e24f48745648451635cec7d591162d9f" [[package]] name = "reqwest" -version = "0.11.24" +version = "0.11.27" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c6920094eb85afde5e4a138be3f2de8bbdf28000f0029e72c45025a56b042251" +checksum = "dd67538700a17451e7cba03ac727fb961abb7607553461627b97de0b89cf4a62" dependencies = [ "base64 0.21.7", "bytes", "encoding_rs", "futures-core", "futures-util", - "h2 0.3.24", + "h2", "http 0.2.12", "http-body 0.4.6", "hyper 0.14.28", + "hyper-rustls 0.24.2", "hyper-tls", "ipnet", "js-sys", @@ -4043,20 +5174,64 @@ dependencies = [ "once_cell", "percent-encoding", "pin-project-lite", - "rustls-pemfile", + "rustls 0.21.11", + "rustls-pemfile 1.0.4", "serde", "serde_json", "serde_urlencoded", - "sync_wrapper", - "system-configuration", + "sync_wrapper 0.1.2", + "system-configuration 0.5.1", "tokio", "tokio-native-tls", + "tokio-rustls 0.24.1", "tower-service", "url", "wasm-bindgen", "wasm-bindgen-futures", "web-sys", - "winreg", + "webpki-roots 0.25.4", + "winreg 0.50.0", +] + +[[package]] +name = "reqwest" +version = "0.12.4" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "566cafdd92868e0939d3fb961bd0dc25fcfaaed179291093b3d43e6b3150ea10" +dependencies = [ + "base64 0.22.1", + "bytes", + "futures-core", + "futures-util", + "http 1.1.0", + "http-body 1.0.0", + "http-body-util", + "hyper 1.2.0", + "hyper-rustls 0.26.0", + "hyper-util", + "ipnet", + "js-sys", + "log", + "mime", + "once_cell", + "percent-encoding", + "pin-project-lite", + "rustls 0.22.4", + "rustls-pemfile 2.1.2", + "rustls-pki-types", + "serde", + "serde_json", + "serde_urlencoded", + "sync_wrapper 0.1.2", + "tokio", + "tokio-rustls 0.25.0", + "tower-service", + "url", + "wasm-bindgen", + "wasm-bindgen-futures", + "web-sys", + "webpki-roots 0.26.1", + "winreg 0.52.0", ] [[package]] @@ -4164,6 +5339,7 @@ dependencies = [ "pkcs1 0.7.5", "pkcs8 0.10.2", "rand_core 0.6.4", + "sha2 0.10.8", "signature 2.2.0", "spki 0.7.3", "subtle", @@ -4171,6 +5347,24 @@ dependencies = [ ] [[package]] +name = "rtnetlink" +version = "0.13.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "7a552eb82d19f38c3beed3f786bd23aa434ceb9ac43ab44419ca6d67a7e186c0" +dependencies = [ + "futures", + "log", + "netlink-packet-core 0.7.0", + "netlink-packet-route 0.17.1", + "netlink-packet-utils", + "netlink-proto", + "netlink-sys", + "nix 0.26.4", + "thiserror", + "tokio", +] + +[[package]] name = "rusqlite" version = "0.31.0" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -4192,9 +5386,9 @@ checksum = "efe2374f2385cdd8755a446f80b2a646de603c9d8539ca38734879b5c71e378b" [[package]] name = "rustc-demangle" -version = "0.1.23" +version = "0.1.24" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d626bb9dae77e28219937af045c257c28bfd3f69333c512553507f5f9798cb76" +checksum = "719b953e2095829ee67db738b3bfa9fa368c94900df327b3f07fe6e794d2fe1f" [[package]] name = "rustc-hash" @@ -4235,23 +5429,38 @@ dependencies = [ [[package]] name = "rustls" -version = "0.21.10" +version = "0.21.11" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f9d5a6813c0759e4609cd494e8e725babae6a2ca7b62a5536a13daaec6fcb7ba" +checksum = "7fecbfb7b1444f477b345853b1fce097a2c6fb637b2bfb87e6bc5db0f043fae4" dependencies = [ + "log", "ring 0.17.8", - "rustls-webpki", + "rustls-webpki 0.101.7", "sct", ] [[package]] +name = "rustls" +version = "0.22.4" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "bf4ef73721ac7bcd79b2b315da7779d8fc09718c6b3d2d1b2d94850eb8c18432" +dependencies = [ + "log", + "ring 0.17.8", + "rustls-pki-types", + "rustls-webpki 0.102.4", + "subtle", + "zeroize", +] + +[[package]] name = "rustls-native-certs" version = "0.6.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "a9aace74cb666635c918e9c12bc0d348266037aa8eb599b5cba565709a8dff00" dependencies = [ "openssl-probe", - "rustls-pemfile", + "rustls-pemfile 1.0.4", "schannel", "security-framework", ] @@ -4266,6 +5475,22 @@ dependencies = [ ] [[package]] +name = "rustls-pemfile" +version = "2.1.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "29993a25686778eb88d4189742cd713c9bce943bc54251a33509dc63cbacf73d" +dependencies = [ + "base64 0.22.1", + "rustls-pki-types", +] + +[[package]] +name = "rustls-pki-types" +version = "1.7.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "976295e77ce332211c0d24d92c0e83e50f5c5f046d11082cea19f3df13a3562d" + +[[package]] name = "rustls-webpki" version = "0.101.7" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -4276,6 +5501,17 @@ dependencies = [ ] [[package]] +name = "rustls-webpki" +version = "0.102.4" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = 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"registry+https://github.com/rust-lang/crates.io-index" -checksum = "c767fd6fa65d9ccf9cf026122c1b555f2ef9a4f0cea69da4d7dbc3e258d30967" +checksum = "b1eee588578aff73f856ab961cd2f79e36bc45d7ded33a7562adba4667aecc0e" dependencies = [ "proc-macro2", "quote", "serde_derive_internals", - "syn 1.0.109", + "syn 2.0.66", ] [[package]] @@ -4445,9 +5690,9 @@ dependencies = [ [[package]] name = "serde" -version = "1.0.197" +version = "1.0.203" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3fb1c873e1b9b056a4dc4c0c198b24c3ffa059243875552b2bd0933b1aee4ce2" +checksum = "7253ab4de971e72fb7be983802300c30b5a7f0c2e56fab8abfc6a214307c0094" dependencies = [ "serde_derive", ] @@ -4472,31 +5717,31 @@ dependencies = [ [[package]] name = "serde_derive" -version = "1.0.197" +version = "1.0.203" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7eb0b34b42edc17f6b7cac84a52a1c5f0e1bb2227e997ca9011ea3dd34e8610b" +checksum = 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"registry+https://github.com/rust-lang/crates.io-index" @@ -4635,6 +5900,15 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "d66dc143e6b11c1eddc06d5c423cfc97062865baf299914ab64caa38182078fe" [[package]] +name = "simple-dns" +version = "0.6.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "01607fe2e61894468c6dc0b26103abb073fb08b79a3d9e4b6d76a1a341549958" +dependencies = [ + "bitflags 2.4.2", +] + +[[package]] name = "slab" version = "0.4.9" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -4645,9 +5919,9 @@ dependencies = [ [[package]] name = "smallvec" -version = "1.13.1" +version = "1.13.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e6ecd384b10a64542d77071bd64bd7b231f4ed5940fba55e98c3de13824cf3d7" +checksum = "3c5e1a9a646d36c3599cd173a41282daf47c44583ad367b8e6837255952e5c67" [[package]] name = "smawk" @@ -4681,6 +5955,15 @@ dependencies = [ ] [[package]] +name = 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+ "base64ct", + "pem-rfc7468 0.7.0", + "sha2 0.10.8", +] + +[[package]] name = "ssh-key" version = "0.5.1" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -4725,7 +6029,28 @@ dependencies = [ "sec1 0.3.0", "sha2 0.10.8", "signature 1.6.4", - "ssh-encoding", + "ssh-encoding 0.1.0", + "zeroize", +] + +[[package]] +name = "ssh-key" +version = "0.6.6" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "ca9b366a80cf18bb6406f4cf4d10aebfb46140a8c0c33f666a144c5c76ecbafc" +dependencies = [ + "ed25519-dalek 2.1.1", + "p256 0.13.2", + "p384 0.13.0", + "p521", + "rand_core 0.6.4", + "rsa 0.9.6", + "sec1 0.7.3", + "sha2 0.10.8", + "signature 2.2.0", + "ssh-cipher", + "ssh-encoding 0.2.0", + "subtle", "zeroize", ] @@ -4748,22 +6073,78 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "73473c0e59e6d5812c5dfe2a064a6444949f089e20eec9a2e5506596494e4623" [[package]] +name = "struct_iterable" +version = "0.1.1" +source = 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"5d8cec3501a5194c432b2b7976db6b7d10ec95c253208b45f83f7136aa985e29" +dependencies = [ + "strum_macros", +] [[package]] name = "strum_macros" -version = "0.26.1" +version = "0.26.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7a3417fc93d76740d974a01654a09777cb500428cc874ca9f45edfe0c4d4cd18" +checksum = "c6cf59daf282c0a494ba14fd21610a0325f9f90ec9d1231dea26bcb1d696c946" dependencies = [ "heck", "proc-macro2", "quote", "rustversion", - "syn 2.0.52", + "syn 2.0.66", +] + +[[package]] +name = "stun-rs" +version = "0.1.8" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "0adebf9fb8fba5c39ee34092b0383f247e4d1255b98fcffec94b4b797b85b677" +dependencies = [ + "base64 0.22.1", + "bounded-integer", + "byteorder", + "crc", + "enumflags2", + "fallible-iterator", + "hmac-sha1", + "hmac-sha256", + "hostname-validator", + "lazy_static", + "md5", + "paste", + "precis-core", + "precis-profiles", + "quoted-string-parser", + "rand 0.8.5", ] [[package]] @@ -4773,6 +6154,22 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "81cdd64d312baedb58e21336b31bc043b77e01cc99033ce76ef539f78e965ebc" [[package]] +name = "surge-ping" +version = "0.8.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "efbf95ce4c7c5b311d2ce3f088af2b93edef0f09727fa50fbe03c7a979afce77" +dependencies = [ + "hex", + "parking_lot", + "pnet_packet", + "rand 0.8.5", + "socket2", + "thiserror", + "tokio", + "tracing", +] + +[[package]] name = "syn" version = "1.0.109" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -4785,9 +6182,9 @@ dependencies = [ [[package]] name = "syn" -version = "2.0.52" +version = "2.0.66" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b699d15b36d1f02c3e7c69f8ffef53de37aefae075d8488d4ba1a7788d574a07" +checksum = "c42f3f41a2de00b01c0aaad383c5a45241efc8b2d1eda5661812fda5f3cdcff5" dependencies = [ "proc-macro2", "quote", @@ -4801,6 +6198,12 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "2047c6ded9c721764247e62cd3b03c09ffc529b2ba5b10ec482ae507a4a70160" [[package]] +name = "sync_wrapper" +version = "1.0.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "384595c11a4e2969895cad5a8c4029115f5ab956a9e5ef4de79d11a426e5f20c" + +[[package]] name = "synstructure" version = "0.12.6" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -4813,6 +6216,17 @@ dependencies = [ ] [[package]] +name = "synstructure" +version = "0.13.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "c8af7666ab7b6390ab78131fb5b0fce11d6b7a6951602017c35fa82800708971" +dependencies = [ + "proc-macro2", + "quote", + "syn 2.0.66", +] + +[[package]] name = "sysinfo" version = "0.26.9" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -4834,7 +6248,18 @@ checksum = "ba3a3adc5c275d719af8cb4272ea1c4a6d668a777f37e115f6d11ddbc1c8e0e7" dependencies = [ "bitflags 1.3.2", "core-foundation", - "system-configuration-sys", + "system-configuration-sys 0.5.0", +] + +[[package]] +name = "system-configuration" +version = "0.6.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "658bc6ee10a9b4fcf576e9b0819d95ec16f4d2c02d39fd83ac1c8789785c4a42" +dependencies = [ + "bitflags 2.4.2", + "core-foundation", + "system-configuration-sys 0.6.0", ] [[package]] @@ -4848,33 +6273,40 @@ dependencies = [ ] [[package]] +name = "system-configuration-sys" +version = "0.6.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "8e1d1b10ced5ca923a1fcb8d03e96b8d3268065d724548c0211415ff6ac6bac4" +dependencies = [ + "core-foundation-sys", + "libc", +] + +[[package]] name = "tagger" version = "4.3.5" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "094c9f64d6de9a8506b1e49b63a29333b37ed9e821ee04be694d431b3264c3c5" [[package]] +name = "tap" +version = "1.0.1" +source = 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-5027,13 +6459,13 @@ dependencies = [ [[package]] name = "tokio-macros" -version = "2.2.0" +version = "2.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5b8a1e28f2deaa14e508979454cb3a223b10b938b45af148bc0986de36f1923b" +checksum = "5f5ae998a069d4b5aba8ee9dad856af7d520c3699e6159b185c2acd48155d39a" dependencies = [ "proc-macro2", "quote", - "syn 2.0.52", + "syn 2.0.66", ] [[package]] @@ -5047,6 +6479,55 @@ dependencies = [ ] [[package]] +name = "tokio-rustls" +version = "0.24.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "c28327cf380ac148141087fbfb9de9d7bd4e84ab5d2c28fbc911d753de8a7081" +dependencies = [ + "rustls 0.21.11", + "tokio", +] + +[[package]] +name = "tokio-rustls" +version = "0.25.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "775e0c0f0adb3a2f22a00c4745d728b479985fc15ee7ca6a2608388c5569860f" +dependencies = [ + "rustls 0.22.4", + "rustls-pki-types", + "tokio", +] + 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"267ac89e0bec6e691e5813911606935d77c476ff49024f98abcea3e7b15e37af" dependencies = [ "futures-core", "pin-project-lite", @@ -5101,35 +6582,34 @@ dependencies = [ [[package]] name = "tokio-util" -version = "0.7.10" +version = "0.7.11" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5419f34732d9eb6ee4c3578b7989078579b7f039cbbb9ca2c4da015749371e15" +checksum = "9cf6b47b3771c49ac75ad09a6162f53ad4b8088b76ac60e8ec1455b31a189fe1" dependencies = [ "bytes", "futures-core", "futures-sink", "pin-project-lite", "tokio", - "tracing", ] [[package]] name = "toml" -version = "0.8.10" +version = "0.8.13" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9a9aad4a3066010876e8dcf5a8a06e70a558751117a145c6ce2b82c2e2054290" +checksum = "a4e43f8cc456c9704c851ae29c67e17ef65d2c30017c17a9765b89c382dc8bba" dependencies = [ "serde", "serde_spanned", "toml_datetime", - "toml_edit 0.22.6", + "toml_edit 0.22.13", ] [[package]] name = "toml_datetime" -version = 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"e421abadd41a4225275504ea4d6566923418b7f05506fbc9c0fe86ba7396114b" [[package]] +name = "ttl_cache" +version = "0.5.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "4189890526f0168710b6ee65ceaedf1460c48a14318ceec933cb26baa492096a" +dependencies = [ + "linked-hash-map", +] + +[[package]] name = "tungstenite" version = "0.21.0" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -5323,6 +6812,21 @@ dependencies = [ ] [[package]] +name = "ucd-parse" +version = "0.1.13" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "c06ff81122fcbf4df4c1660b15f7e3336058e7aec14437c9f85c6b31a0f279b9" +dependencies = [ + "regex-lite", +] + +[[package]] +name = "ucd-trie" +version = "0.1.6" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "ed646292ffc8188ef8ea4d1e0e0150fb15a5c2e12ad9b8fc191ae7a8a7f3c4b9" + +[[package]] name = "unarray" version = "0.1.4" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -5374,6 +6878,16 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "f962df74c8c05a667b5ee8bcf162993134c104e96440b663c8daa176dc772d8c" [[package]] +name = "universal-hash" +version = "0.5.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "fc1de2c688dc15305988b563c3854064043356019f97a4b46276fe734c4f07ea" +dependencies = [ + "crypto-common", + "subtle", +] + +[[package]] name = "untrusted" version = "0.7.1" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -5394,6 +6908,7 @@ dependencies = [ "form_urlencoded", "idna 0.5.0", "percent-encoding", + "serde", ] [[package]] @@ -5410,9 +6925,9 @@ checksum = "711b9620af191e0cdc7468a8d14e709c3dcdb115b36f838e601583af800a370a" [[package]] name = "uuid" -version = "1.7.0" +version = "1.8.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f00cc9702ca12d3c81455259621e676d0f7251cec66a21e98fe2e9a37db93b2a" +checksum = "a183cf7feeba97b4dd1c0d46788634f6221d87fa961b305bed08c851829efcc0" dependencies = [ "getrandom 0.2.12", "serde", @@ -5437,6 +6952,12 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "49874b5167b65d7193b8aba1567f5c7d93d001cafc34600cee003eda787e483f" [[package]] +name = "waker-fn" +version = "1.2.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "317211a0dc0ceedd78fb2ca9a44aed3d7b9b26f81870d485c07122b4350673b7" + +[[package]] name = "walkdir" version = "2.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -5500,7 +7021,7 @@ dependencies = [ "once_cell", "proc-macro2", "quote", - "syn 2.0.52", + "syn 2.0.66", "wasm-bindgen-shared", ] @@ -5534,7 +7055,7 @@ checksum = "e94f17b526d0a461a191c78ea52bbce64071ed5c04c9ffe424dcb38f74171bb7" dependencies = [ "proc-macro2", "quote", - "syn 2.0.52", + "syn 2.0.66", "wasm-bindgen-backend", "wasm-bindgen-shared", ] @@ -5546,6 +7067,18 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "af190c94f2773fdb3729c55b007a722abb5384da03bc0986df4c289bf5567e96" [[package]] +name = "watchable" +version = "1.1.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "45b42a2f611916b5965120a9cde2b60f2db4454826dd9ad5e6f47c24a5b3b259" +dependencies = [ + "event-listener 4.0.3", + "futures-util", + "parking_lot", + "thiserror", +] + +[[package]] name = "web-sys" version = "0.3.69" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -5556,6 +7089,21 @@ dependencies = [ ] [[package]] +name = "webpki-roots" +version = "0.25.4" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "5f20c57d8d7db6d3b86154206ae5d8fba62dd39573114de97c2cb0578251f8e1" + +[[package]] +name = "webpki-roots" +version = "0.26.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "b3de34ae270483955a94f4b21bdaaeb83d508bb84a01435f393818edb0012009" +dependencies = [ + "rustls-pki-types", +] + +[[package]] name = "weezl" version = "0.1.8" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -5623,12 +7171,94 @@ dependencies = [ ] [[package]] +name = "windows" +version = "0.51.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "ca229916c5ee38c2f2bc1e9d8f04df975b4bd93f9955dc69fabb5d91270045c9" +dependencies = [ + "windows-core 0.51.1", + "windows-targets 0.48.5", +] + +[[package]] +name = "windows" +version = "0.52.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "e48a53791691ab099e5e2ad123536d0fff50652600abaf43bbf952894110d0be" +dependencies = [ + "windows-core 0.52.0", + "windows-implement", + "windows-interface", + "windows-targets 0.52.5", +] + +[[package]] +name = "windows" +version = "0.54.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "9252e5725dbed82865af151df558e754e4a3c2c30818359eb17465f1346a1b49" +dependencies = [ + "windows-core 0.54.0", + "windows-targets 0.52.5", +] + +[[package]] +name = "windows-core" +version = "0.51.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "f1f8cf84f35d2db49a46868f947758c7a1138116f7fac3bc844f43ade1292e64" +dependencies = [ + "windows-targets 0.48.5", +] + +[[package]] name = "windows-core" version = "0.52.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "33ab640c8d7e35bf8ba19b884ba838ceb4fba93a4e8c65a9059d08afcfc683d9" dependencies = [ - "windows-targets 0.52.4", + "windows-targets 0.52.5", +] + +[[package]] +name = "windows-core" +version = "0.54.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "12661b9c89351d684a50a8a643ce5f608e20243b9fb84687800163429f161d65" +dependencies = [ + "windows-result", + "windows-targets 0.52.5", +] + +[[package]] +name = "windows-implement" +version = "0.52.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "12168c33176773b86799be25e2a2ba07c7aab9968b37541f1094dbd7a60c8946" +dependencies = [ + "proc-macro2", + "quote", + "syn 2.0.66", +] + +[[package]] +name = "windows-interface" +version = "0.52.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "9d8dc32e0095a7eeccebd0e3f09e9509365ecb3fc6ac4d6f5f14a3f6392942d1" +dependencies = [ + "proc-macro2", + "quote", + "syn 2.0.66", +] + +[[package]] +name = "windows-result" +version = "0.1.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "749f0da9cc72d82e600d8d2e44cadd0b9eedb9038f71a1c58556ac1c5791813b" +dependencies = [ + "windows-targets 0.52.5", ] [[package]] @@ -5646,7 +7276,7 @@ version = "0.52.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "282be5f36a8ce781fad8c8ae18fa3f9beff57ec1b52cb3de0789201425d9a33d" dependencies = [ - "windows-targets 0.52.4", + "windows-targets 0.52.5", ] [[package]] @@ -5666,17 +7296,18 @@ dependencies = [ [[package]] name = "windows-targets" -version = "0.52.4" +version = "0.52.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7dd37b7e5ab9018759f893a1952c9420d060016fc19a472b4bb20d1bdd694d1b" +checksum = "6f0713a46559409d202e70e28227288446bf7841d3211583a4b53e3f6d96e7eb" dependencies = [ - "windows_aarch64_gnullvm 0.52.4", - "windows_aarch64_msvc 0.52.4", - "windows_i686_gnu 0.52.4", - "windows_i686_msvc 0.52.4", - "windows_x86_64_gnu 0.52.4", - "windows_x86_64_gnullvm 0.52.4", - "windows_x86_64_msvc 0.52.4", + "windows_aarch64_gnullvm 0.52.5", + "windows_aarch64_msvc 0.52.5", + "windows_i686_gnu 0.52.5", + "windows_i686_gnullvm", + "windows_i686_msvc 0.52.5", + "windows_x86_64_gnu 0.52.5", + "windows_x86_64_gnullvm 0.52.5", + "windows_x86_64_msvc 0.52.5", ] [[package]] @@ -5687,9 +7318,9 @@ checksum = "2b38e32f0abccf9987a4e3079dfb67dcd799fb61361e53e2882c3cbaf0d905d8" [[package]] name = "windows_aarch64_gnullvm" -version = "0.52.4" +version = "0.52.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "bcf46cf4c365c6f2d1cc93ce535f2c8b244591df96ceee75d8e83deb70a9cac9" +checksum = "7088eed71e8b8dda258ecc8bac5fb1153c5cffaf2578fc8ff5d61e23578d3263" [[package]] name = "windows_aarch64_msvc" @@ -5705,9 +7336,9 @@ checksum = "dc35310971f3b2dbbf3f0690a219f40e2d9afcf64f9ab7cc1be722937c26b4bc" [[package]] name = "windows_aarch64_msvc" -version = "0.52.4" +version = "0.52.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "da9f259dd3bcf6990b55bffd094c4f7235817ba4ceebde8e6d11cd0c5633b675" +checksum = "9985fd1504e250c615ca5f281c3f7a6da76213ebd5ccc9561496568a2752afb6" [[package]] name = "windows_i686_gnu" @@ -5723,9 +7354,15 @@ checksum = "a75915e7def60c94dcef72200b9a8e58e5091744960da64ec734a6c6e9b3743e" [[package]] name = "windows_i686_gnu" -version = "0.52.4" +version = "0.52.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b474d8268f99e0995f25b9f095bc7434632601028cf86590aea5c8a5cb7801d3" +checksum = "88ba073cf16d5372720ec942a8ccbf61626074c6d4dd2e745299726ce8b89670" + +[[package]] +name = "windows_i686_gnullvm" +version = "0.52.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "87f4261229030a858f36b459e748ae97545d6f1ec60e5e0d6a3d32e0dc232ee9" [[package]] name = "windows_i686_msvc" @@ -5741,9 +7378,9 @@ checksum = "8f55c233f70c4b27f66c523580f78f1004e8b5a8b659e05a4eb49d4166cca406" [[package]] name = "windows_i686_msvc" -version = "0.52.4" +version = "0.52.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1515e9a29e5bed743cb4415a9ecf5dfca648ce85ee42e15873c3cd8610ff8e02" +checksum = "db3c2bf3d13d5b658be73463284eaf12830ac9a26a90c717b7f771dfe97487bf" [[package]] name = "windows_x86_64_gnu" @@ -5759,9 +7396,9 @@ checksum = "53d40abd2583d23e4718fddf1ebec84dbff8381c07cae67ff7768bbf19c6718e" [[package]] name = "windows_x86_64_gnu" -version = "0.52.4" +version = "0.52.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5eee091590e89cc02ad514ffe3ead9eb6b660aedca2183455434b93546371a03" +checksum = "4e4246f76bdeff09eb48875a0fd3e2af6aada79d409d33011886d3e1581517d9" [[package]] name = "windows_x86_64_gnullvm" @@ -5771,9 +7408,9 @@ checksum = "0b7b52767868a23d5bab768e390dc5f5c55825b6d30b86c844ff2dc7414044cc" [[package]] name = "windows_x86_64_gnullvm" -version = "0.52.4" +version = "0.52.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "77ca79f2451b49fa9e2af39f0747fe999fcda4f5e241b2898624dca97a1f2177" +checksum = "852298e482cd67c356ddd9570386e2862b5673c85bd5f88df9ab6802b334c596" [[package]] name = "windows_x86_64_msvc" @@ -5789,9 +7426,9 @@ checksum = "ed94fce61571a4006852b7389a063ab983c02eb1bb37b47f8272ce92d06d9538" [[package]] name = "windows_x86_64_msvc" -version = "0.52.4" +version = "0.52.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "32b752e52a2da0ddfbdbcc6fceadfeede4c939ed16d13e648833a61dfb611ed8" +checksum = "bec47e5bfd1bff0eeaf6d8b485cc1074891a197ab4225d504cb7a1ab88b02bf0" [[package]] name = "winnow" @@ -5822,6 +7459,39 @@ dependencies = [ ] [[package]] +name = "winreg" +version = "0.52.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "a277a57398d4bfa075df44f501a17cfdf8542d224f0d36095a2adc7aee4ef0a5" +dependencies = [ + "cfg-if", + "windows-sys 0.48.0", +] + +[[package]] +name = "wmi" +version = "0.13.3" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "fc2f0a4062ca522aad4705a2948fd4061b3857537990202a8ddd5af21607f79a" +dependencies = [ + "chrono", + "futures", + "log", + "serde", + "thiserror", + "windows 0.52.0", +] + +[[package]] +name = "wyz" +version = "0.5.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "05f360fc0b24296329c78fda852a1e9ae82de9cf7b27dae4b7f62f118f77b9ed" +dependencies = [ + "tap", +] + +[[package]] name = "x25519-dalek" version = "2.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -5839,13 +7509,47 @@ version = "0.14.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "e0ecbeb7b67ce215e40e3cc7f2ff902f94a223acf44995934763467e7b1febc8" dependencies = [ - "asn1-rs", + "asn1-rs 0.5.2", "base64 0.13.1", "data-encoding", - "der-parser", + "der-parser 8.2.0", + "lazy_static", + "nom", + "oid-registry 0.6.1", + "rusticata-macros", + "thiserror", + "time 0.3.34", +] + +[[package]] +name = "x509-parser" +version = "0.15.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "7069fba5b66b9193bd2c5d3d4ff12b839118f6bcbef5328efafafb5395cf63da" +dependencies = [ + "asn1-rs 0.5.2", + "data-encoding", + "der-parser 8.2.0", "lazy_static", "nom", - "oid-registry", + "oid-registry 0.6.1", + "rusticata-macros", + "thiserror", + "time 0.3.34", +] + +[[package]] +name = "x509-parser" +version = "0.16.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "fcbc162f30700d6f3f82a24bf7cc62ffe7caea42c0b2cba8bf7f3ae50cf51f69" +dependencies = [ + "asn1-rs 0.6.1", + "data-encoding", + "der-parser 9.0.0", + "lazy_static", + "nom", + "oid-registry 0.7.0", "rusticata-macros", "thiserror", "time 0.3.34", @@ -5863,6 +7567,21 @@ dependencies = [ ] [[package]] +name = "xml-rs" +version = "0.8.20" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "791978798f0597cfc70478424c2b4fdc2b7a8024aaff78497ef00f24ef674193" + +[[package]] +name = "xmltree" +version = "0.10.3" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "d7d8a75eaf6557bb84a65ace8609883db44a29951042ada9b393151532e41fcb" +dependencies = [ + "xml-rs", +] + +[[package]] name = "yansi" version = "0.5.1" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -5914,6 +7633,12 @@ dependencies = [ ] [[package]] +name = "z32" +version = "1.1.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "edb37266251c28b03d08162174a91c3a092e3bd4f476f8205ee1c507b78b7bdc" + +[[package]] name = "zerocopy" version = "0.7.32" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -5930,7 +7655,7 @@ checksum = "9ce1b18ccd8e73a9321186f97e46f9f04b778851177567b1975109d26a08d2a6" dependencies = [ "proc-macro2", "quote", - "syn 2.0.52", + "syn 2.0.66", ] [[package]] @@ -5950,5 +7675,20 @@ checksum = "ce36e65b0d2999d2aafac989fb249189a141aee1f53c612c1f37d72631959f69" dependencies = [ "proc-macro2", "quote", - "syn 2.0.52", + "syn 2.0.66", +] + +[[package]] +name = "zune-core" +version = "0.4.12" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "3f423a2c17029964870cfaabb1f13dfab7d092a62a29a89264f4d36990ca414a" + +[[package]] +name = "zune-jpeg" +version = "0.4.11" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "ec866b44a2a1fd6133d363f073ca1b179f438f99e7e5bfb1e33f7181facfe448" +dependencies = [ + "zune-core", ] diff --git a/pkgs/development/libraries/libdeltachat/default.nix b/pkgs/development/libraries/libdeltachat/default.nix index e11f18907055b..4f303ba3ff4b2 100644 --- a/pkgs/development/libraries/libdeltachat/default.nix +++ b/pkgs/development/libraries/libdeltachat/default.nix @@ -31,13 +31,13 @@ let }; in stdenv.mkDerivation rec { pname = "libdeltachat"; - version = "1.136.3"; + version = "1.140.2"; src = fetchFromGitHub { owner = "deltachat"; repo = "deltachat-core-rust"; rev = "v${version}"; - hash = "sha256-/ZWpPpxnOCLGswrfbEPvfUn1LpdBQeR5LecRAB0PEhI="; + hash = "sha256-BSbvgKiI89B+nxp5McBKTJAwgePt27C1QvSQLhTL7pQ="; }; patches = [ diff --git a/pkgs/development/libraries/libdeltachat/no-static-lib.patch b/pkgs/development/libraries/libdeltachat/no-static-lib.patch index 14ea1106138f9..9dc4ffd0ec074 100644 --- a/pkgs/development/libraries/libdeltachat/no-static-lib.patch +++ b/pkgs/development/libraries/libdeltachat/no-static-lib.patch @@ -1,33 +1,33 @@ diff --git a/CMakeLists.txt b/CMakeLists.txt -index 44ca43e7..8b6960dd 100644 +index 5587e391..a18092f5 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt -@@ -14,7 +14,6 @@ find_program(CARGO cargo) +@@ -20,7 +20,6 @@ endif() add_custom_command( OUTPUT -- "target/release/libdeltachat.a" - "target/release/libdeltachat.${DYNAMIC_EXT}" - "target/release/pkgconfig/deltachat.pc" +- "${CMAKE_BINARY_DIR}/target/release/libdeltachat.a" + "${CMAKE_BINARY_DIR}/target/release/libdeltachat.${DYNAMIC_EXT}" + "${CMAKE_BINARY_DIR}/target/release/pkgconfig/deltachat.pc" COMMAND -@@ -39,12 +38,10 @@ add_custom_target( +@@ -35,12 +34,10 @@ add_custom_target( lib_deltachat ALL DEPENDS -- "target/release/libdeltachat.a" - "target/release/libdeltachat.${DYNAMIC_EXT}" - "target/release/pkgconfig/deltachat.pc" +- "${CMAKE_BINARY_DIR}/target/release/libdeltachat.a" + "${CMAKE_BINARY_DIR}/target/release/libdeltachat.${DYNAMIC_EXT}" + "${CMAKE_BINARY_DIR}/target/release/pkgconfig/deltachat.pc" ) install(FILES "deltachat-ffi/deltachat.h" DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}) --install(FILES "target/release/libdeltachat.a" DESTINATION ${CMAKE_INSTALL_LIBDIR}) - install(FILES "target/release/libdeltachat.${DYNAMIC_EXT}" DESTINATION ${CMAKE_INSTALL_LIBDIR}) - install(FILES "target/release/pkgconfig/deltachat.pc" DESTINATION ${CMAKE_INSTALL_LIBDIR}/pkgconfig) +-install(FILES "${CMAKE_BINARY_DIR}/target/${ARCH_DIR}/release/libdeltachat.a" DESTINATION ${CMAKE_INSTALL_LIBDIR}) + install(FILES "${CMAKE_BINARY_DIR}/target/${ARCH_DIR}/release/libdeltachat.${DYNAMIC_EXT}" DESTINATION ${CMAKE_INSTALL_LIBDIR}) + install(FILES "${CMAKE_BINARY_DIR}/target/${ARCH_DIR}/release/pkgconfig/deltachat.pc" DESTINATION ${CMAKE_INSTALL_LIBDIR}/pkgconfig) diff --git a/deltachat-ffi/Cargo.toml b/deltachat-ffi/Cargo.toml -index de0fbafe..120efec9 100644 +index d66cb00f..48347a48 100644 --- a/deltachat-ffi/Cargo.toml +++ b/deltachat-ffi/Cargo.toml -@@ -12,7 +12,7 @@ categories = ["cryptography", "std", "email"] +@@ -11,7 +11,7 @@ categories = ["cryptography", "std", "email"] [lib] name = "deltachat" diff --git a/pkgs/development/libraries/libdisplay-info/default.nix b/pkgs/development/libraries/libdisplay-info/default.nix index 20376ba6a4b3b..68cca4ea13558 100644 --- a/pkgs/development/libraries/libdisplay-info/default.nix +++ b/pkgs/development/libraries/libdisplay-info/default.nix @@ -11,14 +11,14 @@ stdenv.mkDerivation rec { pname = "libdisplay-info"; - version = "0.1.1"; + version = "0.2.0"; src = fetchFromGitLab { domain = "gitlab.freedesktop.org"; owner = "emersion"; repo = pname; rev = version; - sha256 = "sha256-7t1CoLus3rPba9paapM7+H3qpdsw7FlzJsSHFwM/2Lk="; + sha256 = "sha256-6xmWBrPHghjok43eIDGeshpUEQTuwWLXNHg7CnBUt3Q="; }; depsBuildBuild = [ pkg-config ]; diff --git a/pkgs/development/libraries/libgcrypt/default.nix b/pkgs/development/libraries/libgcrypt/default.nix index 3605d48a2fd1b..41e420f173fb4 100644 --- a/pkgs/development/libraries/libgcrypt/default.nix +++ b/pkgs/development/libraries/libgcrypt/default.nix @@ -39,7 +39,9 @@ stdenv.mkDerivation rec { strictDeps = true; configureFlags = [ "--with-libgpg-error-prefix=${libgpg-error.dev}" ] - ++ lib.optional (stdenv.hostPlatform.isMusl || (stdenv.hostPlatform.isDarwin && stdenv.hostPlatform.isAarch64)) "--disable-asm"; # for darwin see https://dev.gnupg.org/T5157 + ++ lib.optional (stdenv.hostPlatform.isMusl || (stdenv.hostPlatform.isDarwin && stdenv.hostPlatform.isAarch64)) "--disable-asm" # for darwin see https://dev.gnupg.org/T5157 + # Fix undefined reference errors with version script under LLVM. + ++ lib.optional (stdenv.cc.bintools.isLLVM && lib.versionAtLeast stdenv.cc.bintools.version "17") "LDFLAGS=-Wl,--undefined-version"; # Necessary to generate correct assembly when compiling for aarch32 on # aarch64 diff --git a/pkgs/development/libraries/libnftnl/default.nix b/pkgs/development/libraries/libnftnl/default.nix index 52c906ad5f185..3fb02abfb5337 100644 --- a/pkgs/development/libraries/libnftnl/default.nix +++ b/pkgs/development/libraries/libnftnl/default.nix @@ -9,6 +9,8 @@ stdenv.mkDerivation rec { hash = "sha256-zurqLNkhR9oZ8To1p/GkvCdn/4l+g45LR5z1S1nHd/Q="; }; + configureFlags = lib.optional (stdenv.cc.bintools.isLLVM && lib.versionAtLeast stdenv.cc.bintools.version "17") "LDFLAGS=-Wl,--undefined-version"; + nativeBuildInputs = [ pkg-config ]; buildInputs = [ libmnl ]; diff --git a/pkgs/development/libraries/libqofono/default.nix b/pkgs/development/libraries/libqofono/default.nix index 361421466e892..ff72711c8a75f 100644 --- a/pkgs/development/libraries/libqofono/default.nix +++ b/pkgs/development/libraries/libqofono/default.nix @@ -52,7 +52,7 @@ mkDerivation rec { description = "Library for accessing the ofono daemon, and declarative plugin for it"; homepage = "https://git.sailfishos.org/mer-core/libqofono/"; license = licenses.lgpl21Plus; - maintainers = with maintainers; [ samueldr ]; + maintainers = with maintainers; [ ]; platforms = platforms.linux; }; } diff --git a/pkgs/development/libraries/libusbgx/default.nix b/pkgs/development/libraries/libusbgx/default.nix index 676870aee5047..1f6e8f1697729 100644 --- a/pkgs/development/libraries/libusbgx/default.nix +++ b/pkgs/development/libraries/libusbgx/default.nix @@ -16,7 +16,7 @@ stdenv.mkDerivation { lgpl21Plus # library gpl2Plus # examples ]; - maintainers = with lib.maintainers; [ lheckemann ]; + maintainers = with lib.maintainers; [ ]; platforms = lib.platforms.linux; }; } diff --git a/pkgs/development/libraries/libva/utils.nix b/pkgs/development/libraries/libva/utils.nix index febcc2cc4de20..96373327ca0ed 100644 --- a/pkgs/development/libraries/libva/utils.nix +++ b/pkgs/development/libraries/libva/utils.nix @@ -4,13 +4,13 @@ stdenv.mkDerivation rec { pname = "libva-utils"; - version = "2.21.0"; + version = "2.22.0"; src = fetchFromGitHub { owner = "intel"; repo = "libva-utils"; rev = version; - sha256 = "sha256-+Ayx5Csgeip2qj1ywE7cBxupXiYJTNXhRo17009vG4I="; + sha256 = "sha256-CmhdhNNRO2j8lH7awp9YiKWMvV17GTBsXdrNY06jT2w="; }; nativeBuildInputs = [ meson ninja pkg-config ]; diff --git a/pkgs/development/libraries/lightgbm/default.nix b/pkgs/development/libraries/lightgbm/default.nix index 57d3407aef91f..abb52eb5f0aa1 100644 --- a/pkgs/development/libraries/lightgbm/default.nix +++ b/pkgs/development/libraries/lightgbm/default.nix @@ -23,14 +23,14 @@ stdenv.mkDerivation rec { # in \ # rWrapper.override{ packages = [ lgbm ]; }" pname = lib.optionalString rLibrary "r-" + pnameBase; - version = "4.3.0"; + version = "4.4.0"; src = fetchFromGitHub { owner = "microsoft"; repo = pnameBase; rev = "v${version}"; fetchSubmodules = true; - hash = "sha256-hEoGdzC6n8t14ZUFWFrdljEkQRo9qaDGYTamvIAgrbg="; + hash = "sha256-i4mtJwSwnbGMXVfQ8a9jZZPUBBibXyQPgMVJ3uXxeGQ="; }; nativeBuildInputs = [ cmake ] diff --git a/pkgs/development/libraries/physics/hepmc3/default.nix b/pkgs/development/libraries/physics/hepmc3/default.nix index 7ec49da065140..53ee798c17b6d 100644 --- a/pkgs/development/libraries/physics/hepmc3/default.nix +++ b/pkgs/development/libraries/physics/hepmc3/default.nix @@ -16,11 +16,11 @@ in stdenv.mkDerivation rec { pname = "hepmc3"; - version = "3.2.7"; + version = "3.3.0"; src = fetchurl { url = "http://hepmc.web.cern.ch/hepmc/releases/HepMC3-${version}.tar.gz"; - sha256 = "sha256-WH+qZVbMVMzYmtNUIUYbR2HXgJvBei5y9QNNrqFCIys="; + sha256 = "sha256-b4dgke3PfubQwNsE4IAFbonvwaYavmI1XZfOjnNXadY="; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/qpdf/default.nix b/pkgs/development/libraries/qpdf/default.nix index ab6078c619f5a..e3772dbb27870 100644 --- a/pkgs/development/libraries/qpdf/default.nix +++ b/pkgs/development/libraries/qpdf/default.nix @@ -1,4 +1,17 @@ -{ lib, stdenv, fetchFromGitHub, libjpeg, zlib, cmake, perl }: +{ lib +, stdenv +, fetchFromGitHub +, cmake +, libjpeg +, perl +, zlib + +# for passthru.tests +, cups-filters +, pdfmixtool +, pdfslicer +, python3 +}: stdenv.mkDerivation rec { pname = "qpdf"; @@ -24,6 +37,15 @@ stdenv.mkDerivation rec { doCheck = true; + passthru.tests = { + inherit (python3.pkgs) pikepdf; + inherit + cups-filters + pdfmixtool + pdfslicer + ; + }; + meta = with lib; { homepage = "https://qpdf.sourceforge.io/"; description = "C++ library and set of programs that inspect and manipulate the structure of PDF files"; diff --git a/pkgs/development/libraries/s2n-tls/default.nix b/pkgs/development/libraries/s2n-tls/default.nix index 60e6eaf5b5350..d4a440e587c12 100644 --- a/pkgs/development/libraries/s2n-tls/default.nix +++ b/pkgs/development/libraries/s2n-tls/default.nix @@ -8,13 +8,13 @@ stdenv.mkDerivation rec { pname = "s2n-tls"; - version = "1.4.14"; + version = "1.4.16"; src = fetchFromGitHub { owner = "aws"; repo = pname; rev = "v${version}"; - hash = "sha256-FEEjsJ5l87yuFDDzJPcAQ0O7OG6neK5PX+DMY5OIKJM="; + hash = "sha256-HkpOd05/5YIDsBm4L3hLuI0obm7uAwsV1dC2/e2f5aw="; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/tdlib/default.nix b/pkgs/development/libraries/tdlib/default.nix index 7564d33636f16..3c60ca5fc2a24 100644 --- a/pkgs/development/libraries/tdlib/default.nix +++ b/pkgs/development/libraries/tdlib/default.nix @@ -2,7 +2,7 @@ stdenv.mkDerivation { pname = "tdlib"; - version = "1.8.30"; + version = "1.8.31"; src = fetchFromGitHub { owner = "tdlib"; @@ -11,8 +11,8 @@ stdenv.mkDerivation { # The tdlib authors do not set tags for minor versions, but # external programs depending on tdlib constrain the minor # version, hence we set a specific commit with a known version. - rev = "fab354add5a257a8121a4a7f1ff6b1b9fa9a9073"; - hash = "sha256-fyAWfAG/zLf3XTlgHnrIAShS4wo6hGIwu46k5TL6Zoo="; + rev = "8f19c751dc296cedb9a921badb7a02a8c0cb1aeb"; + hash = "sha256-M9EFNgWIpBz276moCG3qJ1WDIEP5j24vuYHio9jc8W0="; }; buildInputs = [ gperf openssl readline zlib ]; diff --git a/pkgs/development/libraries/vtk/generic.nix b/pkgs/development/libraries/vtk/generic.nix index 73fc650844dbe..30a6dec4c530f 100644 --- a/pkgs/development/libraries/vtk/generic.nix +++ b/pkgs/development/libraries/vtk/generic.nix @@ -110,7 +110,7 @@ in stdenv.mkDerivation { description = "Open source libraries for 3D computer graphics, image processing and visualization"; homepage = "https://www.vtk.org/"; license = licenses.bsd3; - maintainers = with maintainers; [ knedlsepp tfmoraes lheckemann ]; + maintainers = with maintainers; [ knedlsepp tfmoraes ]; platforms = with platforms; unix; }; } diff --git a/pkgs/development/libraries/xgboost/default.nix b/pkgs/development/libraries/xgboost/default.nix index ecb90117b6fe4..e5432430cac3e 100644 --- a/pkgs/development/libraries/xgboost/default.nix +++ b/pkgs/development/libraries/xgboost/default.nix @@ -59,9 +59,9 @@ effectiveStdenv.mkDerivation rec { }; patches = lib.optionals (cudaSupport && cudaPackages.cudaMajorMinorVersion == "12.4") [ - (fetchpatch { + (fetchpatch { # https://github.com/dmlc/xgboost/pull/10123 name = "Fix compilation with the ctk 12.4."; - url = "https://github.com/dmlc/xgboost/pull/10123.patch"; + url = "https://github.com/dmlc/xgboost/commit/c760f85db0bc7bd6379901fbfb67ceccc2b37700.patch"; hash = "sha256-iP9mll9pg8T2ztCR7dBPnLP17/x3ImJFrr5G3e2dqHo="; }) ]; diff --git a/pkgs/development/lisp-modules/ql.nix b/pkgs/development/lisp-modules/ql.nix index 93476d78e3a2b..33e4c51683761 100644 --- a/pkgs/development/lisp-modules/ql.nix +++ b/pkgs/development/lisp-modules/ql.nix @@ -269,6 +269,9 @@ let capstone = super.capstone.overrideLispAttrs (o: { nativeLibs = [ pkgs.capstone ]; }); + vk = super.vk.overrideLispAttrs (o: { + nativeLibs = [ pkgs.vulkan-loader ]; + }); }); qlpkgs = diff --git a/pkgs/development/lua-modules/generated-packages.nix b/pkgs/development/lua-modules/generated-packages.nix index 2c44bf7f7f83b..6a74f371615dc 100644 --- a/pkgs/development/lua-modules/generated-packages.nix +++ b/pkgs/development/lua-modules/generated-packages.nix @@ -2391,14 +2391,14 @@ buildLuarocksPackage { lz-n = callPackage({ buildLuarocksPackage, fetchurl, fetchzip, luaOlder }: buildLuarocksPackage { pname = "lz.n"; - version = "1.3.0-1"; + version = "1.3.2-1"; knownRockspec = (fetchurl { - url = "mirror://luarocks/lz.n-1.3.0-1.rockspec"; - sha256 = "03rbinqs0za9193v0l06csvxkcfd93ikks6pnvfs2p6f64abdic9"; + url = "mirror://luarocks/lz.n-1.3.2-1.rockspec"; + sha256 = "00zcqswjs9xwwh6llkair896l2ikh3m8pgfkd38qaqyv0h27jql9"; }).outPath; src = fetchzip { - url = "https://github.com/nvim-neorocks/lz.n/archive/v1.3.0.zip"; - sha256 = "1hdayr06ni2zzjyciv0f36k82zlkmwnvl0imrlqxqr6hq9yqcwvx"; + url = "https://github.com/nvim-neorocks/lz.n/archive/v1.3.2.zip"; + sha256 = "1lpk124k1xd76kb1wpxr9r71way3hprjqrqfiyip1p1cgznw3zp9"; }; disabled = luaOlder "5.1"; @@ -2597,14 +2597,14 @@ buildLuarocksPackage { nlua = callPackage({ buildLuarocksPackage, fetchurl, fetchzip, luaOlder }: buildLuarocksPackage { pname = "nlua"; - version = "0.1.0-1"; + version = "0.2.0-1"; knownRockspec = (fetchurl { - url = "mirror://luarocks/nlua-0.1.0-1.rockspec"; - sha256 = "14ynhy85m2prawym1ap1kplkbicafbczpggzgdnji00frwqa1zvv"; + url = "mirror://luarocks/nlua-0.2.0-1.rockspec"; + sha256 = "15d8gmlf0kr31p1nlj9skliq8yfk3k24w0df6jxlxqnmb8nkxk04"; }).outPath; src = fetchzip { - url = "https://github.com/mfussenegger/nlua/archive/v0.1.0.zip"; - sha256 = "1x3pbv5ngbk0sjgwfpjsv3x49wzq4x29d9rm0hgyyb2g2mwag3jc"; + url = "https://github.com/mfussenegger/nlua/archive/v0.2.0.zip"; + sha256 = "09fxryslz9qwyzsvy0sc67irjikcg8cngl5d6g56prqixr3bsxpy"; }; disabled = luaOlder "5.1"; diff --git a/pkgs/development/misc/avr/libc/default.nix b/pkgs/development/misc/avr/libc/default.nix index 654f2382ca3fb..c2b35ed722045 100644 --- a/pkgs/development/misc/avr/libc/default.nix +++ b/pkgs/development/misc/avr/libc/default.nix @@ -2,11 +2,12 @@ stdenv.mkDerivation rec { pname = "avr-libc"; - version = "2.1.0"; + version = "2.2.0"; + tag_version = builtins.replaceStrings ["."] ["_"] version; src = fetchurl { - url = "https://download.savannah.gnu.org/releases/avr-libc/avr-libc-${version}.tar.bz2"; - sha256 = "1s2lnqsbr1zs7dvsbyyckay52lm8mbjjaqf3cyx5qpcbq3jwx10b"; + url = "https://github.com/avrdudes/avr-libc/releases/download/avr-libc-${tag_version}-release/avr-libc-${version}.tar.bz2"; + hash = "sha256-Bxjv1PVCeId9ploLIDtAIHOzDgTf6piObyqINa0HHTU="; }; nativeBuildInputs = [ automake autoconf ]; diff --git a/pkgs/development/ocaml-modules/cpuid/default.nix b/pkgs/development/ocaml-modules/cpuid/default.nix index a0c28bc92d9a0..7afbd84323990 100644 --- a/pkgs/development/ocaml-modules/cpuid/default.nix +++ b/pkgs/development/ocaml-modules/cpuid/default.nix @@ -6,7 +6,7 @@ buildDunePackage rec { useDune2 = true; - minimumOCamlVersion = "4.03"; + minimalOCamlVersion = "4.03"; src = fetchurl { url = "https://github.com/pqwy/cpuid/releases/download/v${version}/cpuid-v${version}.tbz"; diff --git a/pkgs/development/ocaml-modules/directories/default.nix b/pkgs/development/ocaml-modules/directories/default.nix index 79f994458ca6d..5f86db245470d 100644 --- a/pkgs/development/ocaml-modules/directories/default.nix +++ b/pkgs/development/ocaml-modules/directories/default.nix @@ -5,7 +5,7 @@ buildDunePackage rec { version = "0.5"; useDune2 = true; - minimumOCamlVersion = "4.07"; + minimalOCamlVersion = "4.07"; src = fetchFromGitHub { owner = "ocamlpro"; diff --git a/pkgs/development/ocaml-modules/earley/default.nix b/pkgs/development/ocaml-modules/earley/default.nix index 0d365c8036dd1..a679ee1ed4fd2 100644 --- a/pkgs/development/ocaml-modules/earley/default.nix +++ b/pkgs/development/ocaml-modules/earley/default.nix @@ -12,7 +12,7 @@ buildDunePackage rec { sha256 = "1vi58zdxchpw6ai0bz9h2ggcmg8kv57yk6qbx82lh47s5wb3mz5y"; }; - minimumOCamlVersion = "4.07"; + minimalOCamlVersion = "4.07"; useDune2 = true; buildInputs = [ stdlib-shims ]; diff --git a/pkgs/development/ocaml-modules/eigen/default.nix b/pkgs/development/ocaml-modules/eigen/default.nix index 16a69db3b2fce..5c75c4cb10441 100644 --- a/pkgs/development/ocaml-modules/eigen/default.nix +++ b/pkgs/development/ocaml-modules/eigen/default.nix @@ -13,7 +13,7 @@ buildDunePackage rec { sha256 = "1zaw03as14hyvfpyj6bjrfbcxp2ljdbqcqqgm53kms244mig425f"; }; - minimumOCamlVersion = "4.02"; + minimalOCamlVersion = "4.02"; env.NIX_CFLAGS_COMPILE = lib.optionalString stdenv.isDarwin "-I${lib.getDev libcxx}/include/c++/v1"; diff --git a/pkgs/development/ocaml-modules/fix/default.nix b/pkgs/development/ocaml-modules/fix/default.nix index 1d738dfb32cc6..844059849bfc3 100644 --- a/pkgs/development/ocaml-modules/fix/default.nix +++ b/pkgs/development/ocaml-modules/fix/default.nix @@ -12,7 +12,7 @@ buildDunePackage rec { sha256 = "sha256-Xuw4pEPqAbQjSHrpMCNE7Th0mpbNMSxdEdwvH4hu2SM="; }; - minimumOCamlVersion = "4.03"; + minimalOCamlVersion = "4.03"; useDune2 = true; meta = with lib; { diff --git a/pkgs/development/ocaml-modules/gnuplot/default.nix b/pkgs/development/ocaml-modules/gnuplot/default.nix index 038863aad978a..6b30ac5848c4d 100644 --- a/pkgs/development/ocaml-modules/gnuplot/default.nix +++ b/pkgs/development/ocaml-modules/gnuplot/default.nix @@ -6,7 +6,7 @@ buildDunePackage rec { useDune2 = true; - minimumOCamlVersion = "4.03"; + minimalOCamlVersion = "4.03"; src = fetchFromGitHub { owner = "c-cube"; diff --git a/pkgs/development/ocaml-modules/lacaml/default.nix b/pkgs/development/ocaml-modules/lacaml/default.nix index 04880bca3ac5b..e8d0e966c40f6 100644 --- a/pkgs/development/ocaml-modules/lacaml/default.nix +++ b/pkgs/development/ocaml-modules/lacaml/default.nix @@ -10,7 +10,7 @@ buildDunePackage rec { useDune2 = true; - minimumOCamlVersion = "4.08"; + minimalOCamlVersion = "4.08"; src = fetchurl { url = "https://github.com/mmottl/lacaml/releases/download/${version}/lacaml-${version}.tbz"; diff --git a/pkgs/development/ocaml-modules/lwt-dllist/default.nix b/pkgs/development/ocaml-modules/lwt-dllist/default.nix index b28981b1b7799..88ad74b3e652f 100644 --- a/pkgs/development/ocaml-modules/lwt-dllist/default.nix +++ b/pkgs/development/ocaml-modules/lwt-dllist/default.nix @@ -6,7 +6,7 @@ buildDunePackage rec { useDune2 = true; - minimumOCamlVersion = "4.02"; + minimalOCamlVersion = "4.02"; src = fetchurl { url = "https://github.com/mirage/${pname}/releases/download/v${version}/${pname}-v${version}.tbz"; diff --git a/pkgs/development/ocaml-modules/opam-format/default.nix b/pkgs/development/ocaml-modules/opam-format/default.nix index fdb8ba33d5eb3..1360c62816360 100644 --- a/pkgs/development/ocaml-modules/opam-format/default.nix +++ b/pkgs/development/ocaml-modules/opam-format/default.nix @@ -7,7 +7,7 @@ buildDunePackage rec { inherit (opam-core) src version; - minimumOCamlVersion = "4.02.3"; + minimalOCamlVersion = "4.02.3"; # get rid of check for curl at configure time # opam-format does not call curl at run time diff --git a/pkgs/development/ocaml-modules/opam-repository/default.nix b/pkgs/development/ocaml-modules/opam-repository/default.nix index ff9ad75fad86b..008cc2812453c 100644 --- a/pkgs/development/ocaml-modules/opam-repository/default.nix +++ b/pkgs/development/ocaml-modules/opam-repository/default.nix @@ -3,7 +3,7 @@ buildDunePackage rec { pname = "opam-repository"; - minimumOCamlVersion = "4.02"; + minimalOCamlVersion = "4.02"; useDune2 = true; diff --git a/pkgs/development/ocaml-modules/opti/default.nix b/pkgs/development/ocaml-modules/opti/default.nix index 4ce5087912d29..1d854a1fda502 100644 --- a/pkgs/development/ocaml-modules/opti/default.nix +++ b/pkgs/development/ocaml-modules/opti/default.nix @@ -6,7 +6,7 @@ buildDunePackage rec { useDune2 = true; - minimumOCamlVersion = "4.02"; + minimalOCamlVersion = "4.02"; src = fetchurl { url = "https://github.com/magnusjonsson/opti/releases/download/${version}/opti-${version}.tbz"; diff --git a/pkgs/development/ocaml-modules/postgresql/default.nix b/pkgs/development/ocaml-modules/postgresql/default.nix index 4140baa675cb2..25dddaed08c9e 100644 --- a/pkgs/development/ocaml-modules/postgresql/default.nix +++ b/pkgs/development/ocaml-modules/postgresql/default.nix @@ -6,7 +6,7 @@ buildDunePackage rec { useDune2 = true; - minimumOCamlVersion = "4.08"; + minimalOCamlVersion = "4.08"; src = fetchFromGitHub { owner = "mmottl"; diff --git a/pkgs/development/ocaml-modules/ppx_yojson_conv/default.nix b/pkgs/development/ocaml-modules/ppx_yojson_conv/default.nix index 27d07649d4082..b80adedbc753b 100644 --- a/pkgs/development/ocaml-modules/ppx_yojson_conv/default.nix +++ b/pkgs/development/ocaml-modules/ppx_yojson_conv/default.nix @@ -10,7 +10,7 @@ buildDunePackage rec { pname = "ppx_yojson_conv"; version = "0.15.1"; duneVersion = "3"; - minimumOCamlVersion = "4.08.0"; + minimalOCamlVersion = "4.08.0"; src = fetchFromGitHub { owner = "janestreet"; diff --git a/pkgs/development/ocaml-modules/uri/default.nix b/pkgs/development/ocaml-modules/uri/default.nix index a5c89c76db27a..f8e8efdaae678 100644 --- a/pkgs/development/ocaml-modules/uri/default.nix +++ b/pkgs/development/ocaml-modules/uri/default.nix @@ -11,7 +11,7 @@ buildDunePackage rec { src = fetchurl { url = "https://github.com/mirage/ocaml-${pname}/releases/download/v${version}/${pname}-${version}.tbz"; - sha256 = "0szifda6yism5vn5jdizkha3ad0xk6zw4xgfl8g77dnv83ci7h65"; + sha256 = "cdabaf6ef5cd2161e59cc7b74c6e4a68ecb80a9f4e96002e338e1b6bf17adec4"; }; checkInputs = [ ounit ]; diff --git a/pkgs/development/ocaml-modules/wtf8/default.nix b/pkgs/development/ocaml-modules/wtf8/default.nix index bc071f9305f80..456fe129c8b19 100644 --- a/pkgs/development/ocaml-modules/wtf8/default.nix +++ b/pkgs/development/ocaml-modules/wtf8/default.nix @@ -6,7 +6,7 @@ buildDunePackage rec { useDune2 = true; - minimumOCamlVersion = "4.02"; + minimalOCamlVersion = "4.02"; src = fetchurl { url = "https://github.com/flowtype/ocaml-${pname}/releases/download/v${version}/${pname}-v${version}.tbz"; diff --git a/pkgs/development/php-packages/phpstan/default.nix b/pkgs/development/php-packages/phpstan/default.nix index d2e42454c102a..d44d745829d39 100644 --- a/pkgs/development/php-packages/phpstan/default.nix +++ b/pkgs/development/php-packages/phpstan/default.nix @@ -6,16 +6,16 @@ php.buildComposerProject (finalAttrs: { pname = "phpstan"; - version = "1.11.4"; + version = "1.11.5"; src = fetchFromGitHub { owner = "phpstan"; repo = "phpstan-src"; rev = finalAttrs.version; - hash = "sha256-9scH169cOc4rFUqqs6gqySI9aGEU5Exi8v4VtG9ujY8="; + hash = "sha256-J1y8+sY/amAhWQTL4odL+fe3t10KDNBIMV9Q92VzQcE="; }; - vendorHash = "sha256-u1GS1gyuU6T1ZJ1BLZZ/KbMoPemoN8VSFeR63/KgIAA="; + vendorHash = "sha256-BRm1ih+NHQIet7OuuSqXheVV/ZMS2h2wkRjdJ+nam48="; composerStrictValidation = false; meta = { diff --git a/pkgs/development/python-modules/adafruit-platformdetect/default.nix b/pkgs/development/python-modules/adafruit-platformdetect/default.nix index 81a48bcc62950..b9adcf95b0e9a 100644 --- a/pkgs/development/python-modules/adafruit-platformdetect/default.nix +++ b/pkgs/development/python-modules/adafruit-platformdetect/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "adafruit-platformdetect"; - version = "3.70.1"; + version = "3.71.0"; pyproject = true; disabled = pythonOlder "3.7"; @@ -16,7 +16,7 @@ buildPythonPackage rec { src = fetchPypi { pname = "adafruit_platformdetect"; inherit version; - hash = "sha256-hbvTu3rVleM6OFQb70mq1OlJoe3xpfRJ7JA6djvMr7U="; + hash = "sha256-sgXU1m3SuEP2HIgIOKM2Sz8noLGSruzFe+zf0dA9p2A="; }; build-system = [ setuptools-scm ]; diff --git a/pkgs/development/python-modules/aemet-opendata/default.nix b/pkgs/development/python-modules/aemet-opendata/default.nix index 03a71385fce17..46942738c93a9 100644 --- a/pkgs/development/python-modules/aemet-opendata/default.nix +++ b/pkgs/development/python-modules/aemet-opendata/default.nix @@ -13,8 +13,8 @@ buildPythonPackage rec { pname = "aemet-opendata"; - version = "0.5.1"; - format = "pyproject"; + version = "0.5.2"; + pyproject = true; disabled = pythonOlder "3.11"; @@ -22,15 +22,15 @@ buildPythonPackage rec { owner = "Noltari"; repo = "AEMET-OpenData"; rev = "refs/tags/${version}"; - hash = "sha256-qj1rXM3yHYDQhtOkHfKEGS2ICjN7B2olD4og3uISjcw="; + hash = "sha256-cUvm8WJs2eW/KHIaLhQq/DYj7VIuTqxjhcwHprYIxAo="; }; - nativeBuildInputs = [ + build-system = [ setuptools wheel ]; - propagatedBuildInputs = [ + dependencies = [ aiohttp geopy requests diff --git a/pkgs/development/python-modules/ailment/default.nix b/pkgs/development/python-modules/ailment/default.nix index 14e04ce430e65..22aef7748c3b4 100644 --- a/pkgs/development/python-modules/ailment/default.nix +++ b/pkgs/development/python-modules/ailment/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "ailment"; - version = "9.2.106"; + version = "9.2.107"; pyproject = true; disabled = pythonOlder "3.11"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "angr"; repo = "ailment"; rev = "refs/tags/v${version}"; - hash = "sha256-f1F1mPqrZJvXPmziyRIoPj7lIAfSWzpSpLtVs1RjzhI="; + hash = "sha256-yEwSHmAxbbdLVFatG4pKJokatCkO4RCZUMVAoBSOwTI="; }; build-system = [ setuptools ]; diff --git a/pkgs/development/python-modules/aioairzone-cloud/default.nix b/pkgs/development/python-modules/aioairzone-cloud/default.nix index f3304a4b617c0..21957343c838d 100644 --- a/pkgs/development/python-modules/aioairzone-cloud/default.nix +++ b/pkgs/development/python-modules/aioairzone-cloud/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "aioairzone-cloud"; - version = "0.5.2"; + version = "0.5.3"; pyproject = true; disabled = pythonOlder "3.7"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "Noltari"; repo = "aioairzone-cloud"; rev = "refs/tags/${version}"; - hash = "sha256-06r6Q+MdEirLiPrx71NDp8oeRJzqgDg8FtXt46vHutE="; + hash = "sha256-HI6ZSplKS8V+lfkyx1H8wcSPbNxJNF7h5qn7s75qCtI="; }; build-system = [ setuptools ]; diff --git a/pkgs/development/python-modules/aioairzone/default.nix b/pkgs/development/python-modules/aioairzone/default.nix index 1bb75f3cfb0ea..49684006ca864 100644 --- a/pkgs/development/python-modules/aioairzone/default.nix +++ b/pkgs/development/python-modules/aioairzone/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "aioairzone"; - version = "0.7.6"; + version = "0.7.7"; pyproject = true; disabled = pythonOlder "3.11"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "Noltari"; repo = "aioairzone"; rev = "refs/tags/${version}"; - hash = "sha256-99Km1zizAA0BF4ZlLmKOBoOQzKS/QdWpWC9dzg2s3lU="; + hash = "sha256-0YChwHxxINwvhOAmDPn0IUMOItMDDRx6mGbsz6uSIEU="; }; nativeBuildInputs = [ setuptools ]; diff --git a/pkgs/development/python-modules/aioimaplib/default.nix b/pkgs/development/python-modules/aioimaplib/default.nix index 0aad363183e3b..737a0a3d8e97a 100644 --- a/pkgs/development/python-modules/aioimaplib/default.nix +++ b/pkgs/development/python-modules/aioimaplib/default.nix @@ -8,7 +8,6 @@ mock, pyopenssl, pytestCheckHook, - pythonAtLeast, pythonOlder, pytz, setuptools, @@ -17,7 +16,7 @@ buildPythonPackage rec { pname = "aioimaplib"; - version = "1.0.1"; + version = "1.1.0"; pyproject = true; disabled = pythonOlder "3.7"; @@ -26,7 +25,7 @@ buildPythonPackage rec { owner = "bamthomas"; repo = "aioimaplib"; rev = "refs/tags/${version}"; - hash = "sha256-7Ta0BhtQSm228vvUa5z+pzM3UC7+BskgBNjxsbEb9P0="; + hash = "sha256-TjCPGZGsSb+04kQNzHU3kWBo2vY34ujEqh1GIMIehJc="; }; build-system = [ setuptools ]; @@ -45,13 +44,6 @@ buildPythonPackage rec { # https://github.com/bamthomas/aioimaplib/issues/54 doCheck = pythonOlder "3.11"; - disabledTests = [ - # https://github.com/bamthomas/aioimaplib/issues/77 - "test_get_quotaroot" - # asyncio.exceptions.TimeoutError - "test_idle" - ]; - pythonImportsCheck = [ "aioimaplib" ]; meta = with lib; { diff --git a/pkgs/development/python-modules/aioopenexchangerates/default.nix b/pkgs/development/python-modules/aioopenexchangerates/default.nix index 8f098bb091a8a..b68120fee83e0 100644 --- a/pkgs/development/python-modules/aioopenexchangerates/default.nix +++ b/pkgs/development/python-modules/aioopenexchangerates/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "aioopenexchangerates"; - version = "0.4.12"; + version = "0.4.13"; pyproject = true; disabled = pythonOlder "3.9"; @@ -23,7 +23,7 @@ buildPythonPackage rec { owner = "MartinHjelmare"; repo = "aioopenexchangerates"; rev = "refs/tags/v${version}"; - hash = "sha256-A9d7nAqVwiIsS6f+A4PCGbONdhZb55JSmNuAFG990Ek="; + hash = "sha256-xVEyBE33gncw1h0/T7UJap8jd2KELBHSIlNE13YfIZA="; }; postPatch = '' diff --git a/pkgs/development/python-modules/aiounifi/default.nix b/pkgs/development/python-modules/aiounifi/default.nix index 1bf95b718742b..41b58f12fbd33 100644 --- a/pkgs/development/python-modules/aiounifi/default.nix +++ b/pkgs/development/python-modules/aiounifi/default.nix @@ -16,7 +16,7 @@ buildPythonPackage rec { pname = "aiounifi"; - version = "78"; + version = "79"; pyproject = true; disabled = pythonOlder "3.11"; @@ -25,7 +25,7 @@ buildPythonPackage rec { owner = "Kane610"; repo = "aiounifi"; rev = "refs/tags/v${version}"; - hash = "sha256-fY3VsXJfs/uqqQjR6Sp03XlkCOk+8GvXq476dgagJQ8="; + hash = "sha256-okyUjHWzm2LKyDSmE93qbc8XK4fMQMr9R0L/W7GSeUw="; }; postPatch = '' diff --git a/pkgs/development/python-modules/aiozoneinfo/default.nix b/pkgs/development/python-modules/aiozoneinfo/default.nix index 4f66cb62d444f..6329676378181 100644 --- a/pkgs/development/python-modules/aiozoneinfo/default.nix +++ b/pkgs/development/python-modules/aiozoneinfo/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "aiozoneinfo"; - version = "0.1.0"; + version = "0.2.0"; pyproject = true; disabled = pythonOlder "3.9"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "bluetooth-devices"; repo = "aiozoneinfo"; rev = "refs/tags/v${version}"; - hash = "sha256-gsU7dLLnV+KayfFcuhdcNZPk/XZHGhr6WXOQCIJvUHk="; + hash = "sha256-VpdghF2rXoA94YfMSNaICa3yfRRRiQueVrLk1K4igdk="; }; postPatch = '' diff --git a/pkgs/development/python-modules/aliyun-python-sdk-config/default.nix b/pkgs/development/python-modules/aliyun-python-sdk-config/default.nix index 6d8fe35e20ab3..e9d398de7a188 100644 --- a/pkgs/development/python-modules/aliyun-python-sdk-config/default.nix +++ b/pkgs/development/python-modules/aliyun-python-sdk-config/default.nix @@ -8,14 +8,14 @@ buildPythonPackage rec { pname = "aliyun-python-sdk-config"; - version = "2.2.12"; + version = "2.2.13"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-blrT/yCQ2vxaociSqKvRX3fUyKLsAFT3UyFGB/AzZHI="; + hash = "sha256-w4YJe3Bngg4A2KVlpIqf80FHhscLMMMk0AVkr/NfbPM="; }; propagatedBuildInputs = [ aliyun-python-sdk-core ]; diff --git a/pkgs/development/python-modules/angr/default.nix b/pkgs/development/python-modules/angr/default.nix index dd46ec463f7bf..9f1ff6bf299c2 100644 --- a/pkgs/development/python-modules/angr/default.nix +++ b/pkgs/development/python-modules/angr/default.nix @@ -37,7 +37,7 @@ buildPythonPackage rec { pname = "angr"; - version = "9.2.106"; + version = "9.2.107"; pyproject = true; disabled = pythonOlder "3.11"; @@ -46,7 +46,7 @@ buildPythonPackage rec { owner = "angr"; repo = "angr"; rev = "refs/tags/v${version}"; - hash = "sha256-TM6Jvb260lQWDrqYASdpRqgS9PmkmPUBcncDtTwWKAU="; + hash = "sha256-f4RiLXEp4q3V2SiX6OSLHbAVCaZ5GLOvqm1qmBAYIZ8="; }; pythonRelaxDeps = [ "capstone" ]; diff --git a/pkgs/development/python-modules/archinfo/default.nix b/pkgs/development/python-modules/archinfo/default.nix index f9d448ff2e48f..f5331820f72d7 100644 --- a/pkgs/development/python-modules/archinfo/default.nix +++ b/pkgs/development/python-modules/archinfo/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "archinfo"; - version = "9.2.106"; + version = "9.2.107"; pyproject = true; disabled = pythonOlder "3.8"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "angr"; repo = "archinfo"; rev = "refs/tags/v${version}"; - hash = "sha256-tjM0+R7m9jlhf/cXptjOoyV7o+9xU889wTwOBcFjNSQ="; + hash = "sha256-D29ddBceo4Bz3KUiQckdbV0e9uPXEOAAIHZrSpqw3BE="; }; build-system = [ setuptools ]; diff --git a/pkgs/development/python-modules/arnparse/default.nix b/pkgs/development/python-modules/arnparse/default.nix index 43e072b314614..f9795be59283a 100644 --- a/pkgs/development/python-modules/arnparse/default.nix +++ b/pkgs/development/python-modules/arnparse/default.nix @@ -25,6 +25,6 @@ buildPythonPackage rec { description = "Parse ARNs using Python"; homepage = "https://github.com/PokaInc/arnparse"; license = licenses.mit; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; }; } diff --git a/pkgs/development/python-modules/asdf-astropy/default.nix b/pkgs/development/python-modules/asdf-astropy/default.nix new file mode 100644 index 0000000000000..1ee09ad98332a --- /dev/null +++ b/pkgs/development/python-modules/asdf-astropy/default.nix @@ -0,0 +1,70 @@ +{ + lib, + asdf-coordinates-schemas, + asdf-standard, + asdf-transform-schemas, + asdf, + astropy, + buildPythonPackage, + fetchFromGitHub, + numpy, + packaging, + pytest-astropy, + pytestCheckHook, + pythonOlder, + scipy, + setuptools-scm, + setuptools, + tomli, + wheel, +}: + +buildPythonPackage rec { + pname = "asdf-astropy"; + version = "0.6.1"; + pyproject = true; + + disabled = pythonOlder "3.10"; + + src = fetchFromGitHub { + owner = "astropy"; + repo = "asdf-astropy"; + rev = "refs/tags/${version}"; + hash = "sha256-dOd9QdBOu7QotRiHkXJoIqaHG6U9odTlRmy22/nvvuw="; + }; + + nativeBuildInputs = [ + setuptools + setuptools-scm + ]; + + propagatedBuildInputs = [ + asdf + asdf-coordinates-schemas + asdf-standard + asdf-transform-schemas + astropy + numpy + packaging + ]; + + nativeCheckInputs = [ + pytest-astropy + pytestCheckHook + scipy + ]; + + pythonImportsCheck = [ "asdf_astropy" ]; + + preCheck = '' + export HOME=$(mktemp -d) + ''; + + meta = with lib; { + description = "Extension library for ASDF to provide support for Astropy"; + homepage = "https://github.com/astropy/asdf-astropy"; + changelog = "https://github.com/astropy/asdf-astropy/blob/${version}/CHANGES.rst"; + license = licenses.bsd3; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/asdf-coordinates-schemas/default.nix b/pkgs/development/python-modules/asdf-coordinates-schemas/default.nix new file mode 100644 index 0000000000000..9b2c103ac13f0 --- /dev/null +++ b/pkgs/development/python-modules/asdf-coordinates-schemas/default.nix @@ -0,0 +1,48 @@ +{ + lib, + asdf-standard, + asdf, + buildPythonPackage, + fetchFromGitHub, + pythonOlder, + setuptools-scm, + setuptools, +}: + +buildPythonPackage rec { + pname = "asdf-coordinates-schemas"; + version = "0.3.0"; + pyproject = true; + + disabled = pythonOlder "3.10"; + + src = fetchFromGitHub { + owner = "asdf-format"; + repo = "asdf-coordinates-schemas"; + rev = "refs/tags/${version}"; + hash = "sha256-LuC0m25OqQwivK/Z3OfoCtdhBV87rk16XrkJxUxG07o="; + }; + + build-system = [ + setuptools + setuptools-scm + ]; + + dependencies = [ + asdf + asdf-standard + ]; + + # Circular dependency with asdf-astropy + doCheck = false; + + pythonImportsCheck = [ "asdf_coordinates_schemas" ]; + + meta = with lib; { + description = "ASDF schemas for coordinates"; + homepage = "https://github.com/asdf-format/asdf-coordinates-schemas"; + changelog = "https://github.com/asdf-format/asdf-coordinates-schemas/blob/${version}/CHANGES.rst"; + license = licenses.bsd3; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/asdf-wcs-schemas/default.nix b/pkgs/development/python-modules/asdf-wcs-schemas/default.nix new file mode 100644 index 0000000000000..f59b2cb98803a --- /dev/null +++ b/pkgs/development/python-modules/asdf-wcs-schemas/default.nix @@ -0,0 +1,56 @@ +{ + lib, + asdf-astropy, + asdf-coordinates-schemas, + asdf-standard, + asdf-transform-schemas, + asdf, + buildPythonPackage, + fetchFromGitHub, + pytestCheckHook, + pythonOlder, + setuptools-scm, + setuptools, +}: + +buildPythonPackage rec { + pname = "asdf-wcs-schemas"; + version = "0.4.0"; + pyproject = true; + + disabled = pythonOlder "3.10"; + + src = fetchFromGitHub { + owner = "asdf-format"; + repo = "asdf-wcs-schemas"; + rev = "refs/tags/${version}"; + hash = "sha256-4CxKLMYXdNkNwkfFRX3YKkS4e+Z3wQgmz8ogbC4Z1vI="; + }; + + build-system = [ + setuptools + setuptools-scm + ]; + + dependencies = [ + asdf-coordinates-schemas + asdf-standard + asdf-transform-schemas + ]; + + nativeCheckInputs = [ + asdf + asdf-astropy + pytestCheckHook + ]; + + pythonImportsCheck = [ "asdf_wcs_schemas" ]; + + meta = with lib; { + description = "World Coordinate System (WCS) ASDF schemas"; + homepage = "https://github.com/asdf-format/asdf-wcs-schemas"; + changelog = "https://github.com/asdf-format/asdf-wcs-schemas/blob/${version}/CHANGES.rst"; + license = licenses.bsd3; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/aws-adfs/default.nix b/pkgs/development/python-modules/aws-adfs/default.nix index 30198118f22bb..cd81d99efac87 100644 --- a/pkgs/development/python-modules/aws-adfs/default.nix +++ b/pkgs/development/python-modules/aws-adfs/default.nix @@ -27,19 +27,22 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "venth"; - repo = pname; + repo = "aws-adfs"; rev = "refs/tags/v${version}"; hash = "sha256-ZzQ92VBa8CApd0WkfPrUZsEZICK2fhwmt45P2sx2mK0="; }; - nativeBuildInputs = [ + build-system = [ poetry-core pythonRelaxDepsHook ]; - pythonRelaxDeps = [ "configparser" ]; + pythonRelaxDeps = [ + "configparser" + "requests-kerberos" + ]; - propagatedBuildInputs = [ + dependencies = [ boto3 botocore click @@ -64,10 +67,10 @@ buildPythonPackage rec { meta = with lib; { description = "Command line tool to ease AWS CLI authentication against ADFS"; - mainProgram = "aws-adfs"; homepage = "https://github.com/venth/aws-adfs"; changelog = "https://github.com/venth/aws-adfs/releases/tag/v${version}"; license = licenses.psfl; maintainers = with maintainers; [ bhipple ]; + mainProgram = "aws-adfs"; }; } diff --git a/pkgs/development/python-modules/azure-mgmt-storage/default.nix b/pkgs/development/python-modules/azure-mgmt-storage/default.nix index f1efac7bb88fd..4cc72e61d4597 100644 --- a/pkgs/development/python-modules/azure-mgmt-storage/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-storage/default.nix @@ -4,24 +4,29 @@ fetchPypi, azure-mgmt-common, azure-mgmt-core, + isodate, pythonOlder, + setuptools, }: buildPythonPackage rec { pname = "azure-mgmt-storage"; - version = "21.1.0"; - format = "setuptools"; + version = "21.2.0"; + pyproject = true; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - hash = "sha256-1tPA6RfJiLye0Eckd9PvP5CIYAnrHZenEZRPg3VjAWI="; + hash = "sha256-KHyYQLAb6TGBnUA9p+1SvWL9B3sFKd1HDm28T+3ksg0="; }; - propagatedBuildInputs = [ + build-system = [ setuptools ]; + + dependencies = [ azure-mgmt-common azure-mgmt-core + isodate ]; pythonNamespaces = [ "azure.mgmt" ]; @@ -34,6 +39,7 @@ buildPythonPackage rec { meta = with lib; { description = "This is the Microsoft Azure Storage Management Client Library"; homepage = "https://github.com/Azure/azure-sdk-for-python"; + changelog = "https://github.com/Azure/azure-sdk-for-python/blob/azure-mgmt-storage_${version}/sdk/storage/azure-mgmt-storage/CHANGELOG.md"; license = licenses.mit; maintainers = with maintainers; [ jonringer diff --git a/pkgs/development/python-modules/berkeleydb/default.nix b/pkgs/development/python-modules/berkeleydb/default.nix new file mode 100644 index 0000000000000..514a9b0c689ab --- /dev/null +++ b/pkgs/development/python-modules/berkeleydb/default.nix @@ -0,0 +1,38 @@ +{ + lib, + buildPythonPackage, + fetchPypi, + setuptools, + pkgs, + python, +}: + +buildPythonPackage rec { + pname = "berkeleydb"; + version = "18.1.8"; + pyproject = true; + + src = fetchPypi { + inherit pname version; + hash = "sha256-4YMaeQv9hVdA5cEvlS8Z9kbCaYBs/DYnda/Zh4zzJVc="; + }; + + build-system = [ setuptools ]; + + checkPhase = '' + ${python.interpreter} test.py + ''; + + # See: https://github.com/NixOS/nixpkgs/pull/311198/files#r1597746759 + env = { + BERKELEYDB_INCDIR = "${lib.getDev pkgs.db}/include"; + BERKELEYDB_LIBDIR = "${lib.getLib pkgs.db}/lib"; + }; + + meta = with lib; { + description = "Python bindings for Oracle Berkeley DB"; + homepage = "https://www.jcea.es/programacion/pybsddb.htm"; + license = with licenses; [ bsd3 ]; + maintainers = [ ]; + }; +} diff --git a/pkgs/development/python-modules/boto3-stubs/default.nix b/pkgs/development/python-modules/boto3-stubs/default.nix index 4811bda0370fa..0e7054683263d 100644 --- a/pkgs/development/python-modules/boto3-stubs/default.nix +++ b/pkgs/development/python-modules/boto3-stubs/default.nix @@ -366,7 +366,7 @@ buildPythonPackage rec { pname = "boto3-stubs"; - version = "1.34.129"; + version = "1.34.131"; pyproject = true; disabled = pythonOlder "3.7"; @@ -374,7 +374,7 @@ buildPythonPackage rec { src = fetchPypi { pname = "boto3_stubs"; inherit version; - hash = "sha256-CXHgszlO4agOSfTcLoUI3JqHi/kbNNlbsx6Mw0CdFvk="; + hash = "sha256-AZ2CqKRJbAGGPWdqjU8q2DC/TLdSsRB+pFP+4w1QOmA="; }; build-system = [ setuptools ]; diff --git a/pkgs/development/python-modules/botocore-stubs/default.nix b/pkgs/development/python-modules/botocore-stubs/default.nix index ee72f50008bf6..0eac91a8f3082 100644 --- a/pkgs/development/python-modules/botocore-stubs/default.nix +++ b/pkgs/development/python-modules/botocore-stubs/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "botocore-stubs"; - version = "1.34.129"; + version = "1.34.131"; pyproject = true; disabled = pythonOlder "3.7"; @@ -18,7 +18,7 @@ buildPythonPackage rec { src = fetchPypi { pname = "botocore_stubs"; inherit version; - hash = "sha256-Ub/NAA2bafFkucZMYhUYmvx6hgm8Jj+Tmr0QcEzah6Q="; + hash = "sha256-pS4FLPCKxwjCjh8wKtAxzXYELm+JUTcta+E1CKlYQwY="; }; nativeBuildInputs = [ poetry-core ]; diff --git a/pkgs/development/python-modules/bsddb3/default.nix b/pkgs/development/python-modules/bsddb3/default.nix index fbf29c4f7eac0..af25971df03b8 100644 --- a/pkgs/development/python-modules/bsddb3/default.nix +++ b/pkgs/development/python-modules/bsddb3/default.nix @@ -1,11 +1,11 @@ { lib, buildPythonPackage, + pythonAtLeast, + python, fetchPypi, setuptools, pkgs, - python, - pythonOlder, }: buildPythonPackage rec { @@ -22,11 +22,9 @@ buildPythonPackage rec { buildInputs = [ pkgs.db ]; - doCheck = pythonOlder "3.12"; # distutils usage - - checkPhase = '' - ${python.interpreter} test.py - ''; + # See : https://github.com/NixOS/nixpkgs/pull/311198#discussion_r1599257522 + # More details here : https://www.jcea.es/programacion/pybsddb.htm + disabled = pythonAtLeast "3.10"; # Path to database need to be set. # Somehow the setup.py flag is not propagated. @@ -36,6 +34,16 @@ buildPythonPackage rec { export BERKELEYDB_DIR=${pkgs.db.dev}; ''; + postPatch = '' + substituteInPlace test3.py \ + --replace-fail "from distutils.util import get_platform" "from sysconfig import get_platform" \ + --replace-fail "sys.config[0:3]" "sys.implementation.cache_tag" + ''; + + checkPhase = '' + ${python.interpreter} test.py + ''; + meta = with lib; { description = "Python bindings for Oracle Berkeley DB"; homepage = "https://www.jcea.es/programacion/pybsddb.htm"; diff --git a/pkgs/development/python-modules/certomancer/default.nix b/pkgs/development/python-modules/certomancer/default.nix index eb21bdeeee04e..e9311df36e82f 100644 --- a/pkgs/development/python-modules/certomancer/default.nix +++ b/pkgs/development/python-modules/certomancer/default.nix @@ -87,6 +87,6 @@ buildPythonPackage rec { mainProgram = "certomancer"; homepage = "https://github.com/MatthiasValvekens/certomancer"; license = lib.licenses.mit; - maintainers = with lib.maintainers; [ wolfangaukang ]; + maintainers = [ ]; }; } diff --git a/pkgs/development/python-modules/chacha20poly1305/default.nix b/pkgs/development/python-modules/chacha20poly1305/default.nix index 5ced1c4045325..0493f9b15ee02 100644 --- a/pkgs/development/python-modules/chacha20poly1305/default.nix +++ b/pkgs/development/python-modules/chacha20poly1305/default.nix @@ -26,6 +26,6 @@ buildPythonPackage rec { description = "Module that implements ChaCha20Poly1305"; homepage = "https://github.com/ph4r05/py-chacha20poly1305"; license = licenses.mit; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; }; } diff --git a/pkgs/development/python-modules/changefinder/default.nix b/pkgs/development/python-modules/changefinder/default.nix new file mode 100644 index 0000000000000..b7f49ccce54f7 --- /dev/null +++ b/pkgs/development/python-modules/changefinder/default.nix @@ -0,0 +1,40 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, setuptools +, numpy +, scipy +, statsmodels +}: + +buildPythonPackage { + pname = "changefinder"; + version = "unstable-2024-03-24"; + pyproject = true; + + src = fetchFromGitHub { + owner = "shunsukeaihara"; + repo = "changefinder"; + rev = "58c8c32f127b9e46f9823f36221f194bdb6f3f8b"; + hash = "sha256-1If0gIsMU8673fKSSHVMvDgR1UnYgM/4HiyvZJ9T6VM="; + }; + + nativeBuildInputs = [ + setuptools + ]; + + propagatedBuildInputs = [ + numpy + scipy + statsmodels + ]; + + pythonImportsCheck = [ "changefinder" ]; + + meta = with lib; { + description = "Online Change-Point Detection library based on ChangeFinder algorithm"; + homepage = "https://github.com/shunsukeaihara/changefinder"; + license = licenses.mit; + maintainers = with maintainers; [ raitobezarius ]; + }; +} diff --git a/pkgs/development/python-modules/chromadb/default.nix b/pkgs/development/python-modules/chromadb/default.nix index 976d2fb9a9cf0..867a380d7897c 100644 --- a/pkgs/development/python-modules/chromadb/default.nix +++ b/pkgs/development/python-modules/chromadb/default.nix @@ -10,6 +10,7 @@ fastapi, fetchFromGitHub, grpcio, + httpx, hypothesis, importlib-resources, kubernetes, @@ -50,7 +51,7 @@ buildPythonPackage rec { pname = "chromadb"; - version = "0.5.0"; + version = "0.5.3"; pyproject = true; disabled = pythonOlder "3.9"; @@ -59,13 +60,13 @@ buildPythonPackage rec { owner = "chroma-core"; repo = "chroma"; rev = "refs/tags/${version}"; - hash = "sha256-gM+fexjwifF3evR8jZvMbIDz655RFKPUizrsB2q5tbw="; + hash = "sha256-czDL2b+Jj7mrYZCTfnaZArkOHBaWyTV0BTE2wvykHps="; }; cargoDeps = rustPlatform.fetchCargoTarball { inherit src; name = "${pname}-${version}"; - hash = "sha256-zyiFv/gswGupm7Y8BhviklqJzM914v0QyUsRwbGKZ48="; + hash = "sha256-eTVT1yowuDsajjceWojdUdX466FKneUt1i5QipBFdp4="; }; pythonRelaxDeps = [ "orjson" ]; @@ -92,6 +93,7 @@ buildPythonPackage rec { chroma-hnswlib fastapi grpcio + httpx importlib-resources kubernetes mmh3 @@ -143,12 +145,13 @@ buildPythonPackage rec { disabledTestPaths = [ # Tests require network access - "chromadb/test/property/test_cross_version_persist.py" "chromadb/test/auth/test_simple_rbac_authz.py" + "chromadb/test/db/test_system.py" "chromadb/test/ef/test_default_ef.py" - "chromadb/test/test_api.py" "chromadb/test/property/" + "chromadb/test/property/test_cross_version_persist.py" "chromadb/test/stress/" + "chromadb/test/test_api.py" ]; __darwinAllowLocalNetworking = true; diff --git a/pkgs/development/python-modules/clarifai-grpc/default.nix b/pkgs/development/python-modules/clarifai-grpc/default.nix index c6d737fd14045..45e66edcdcf87 100644 --- a/pkgs/development/python-modules/clarifai-grpc/default.nix +++ b/pkgs/development/python-modules/clarifai-grpc/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "clarifai-grpc"; - version = "10.5.2"; + version = "10.5.3"; pyproject = true; disabled = pythonOlder "3.8"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "Clarifai"; repo = "clarifai-python-grpc"; rev = "refs/tags/${version}"; - hash = "sha256-IlMI4rD4bgAmsNCFpKJwEdZGiY4uCnBsoc2MYN8eXOs="; + hash = "sha256-BhUTOzBa+dEBxtqXDTKuCpsZw8fqwl9Kait5NOcn29g="; }; build-system = [ setuptools ]; diff --git a/pkgs/development/python-modules/clarifai/default.nix b/pkgs/development/python-modules/clarifai/default.nix index 3130098a6ccaf..1c7b15ca241f0 100644 --- a/pkgs/development/python-modules/clarifai/default.nix +++ b/pkgs/development/python-modules/clarifai/default.nix @@ -25,7 +25,7 @@ buildPythonPackage rec { pname = "clarifai"; - version = "10.3.3"; + version = "10.5.2"; pyproject = true; disabled = pythonOlder "3.8"; @@ -34,7 +34,7 @@ buildPythonPackage rec { owner = "Clarifai"; repo = "clarifai-python"; rev = "refs/tags/${version}"; - hash = "sha256-M0OrBqjNjrpxVM/A7NVqarcP8S+VqunYGI4C+Wis6UI="; + hash = "sha256-zAjGVICrYgai6GFpcJyigKxn7kNEZKclggR5ktzrCQ0="; }; pythonRelaxDeps = [ "clarifai-grpc" ]; diff --git a/pkgs/development/python-modules/claripy/default.nix b/pkgs/development/python-modules/claripy/default.nix index e520483a17869..3cc8b05aad735 100644 --- a/pkgs/development/python-modules/claripy/default.nix +++ b/pkgs/development/python-modules/claripy/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "claripy"; - version = "9.2.106"; + version = "9.2.107"; pyproject = true; disabled = pythonOlder "3.11"; @@ -23,7 +23,7 @@ buildPythonPackage rec { owner = "angr"; repo = "claripy"; rev = "refs/tags/v${version}"; - hash = "sha256-y3r0/FU8GcVMv+wnccCB/SUBS+TC22S3qp4Awbhoung="; + hash = "sha256-89wh/SuwxOuORk3S42VA/cJh1GACFWB4ceUxp2OszQM="; }; # z3 does not provide a dist-info, so python-runtime-deps-check will fail diff --git a/pkgs/development/python-modules/cle/default.nix b/pkgs/development/python-modules/cle/default.nix index 551bf6df1bdc2..f828e4c4b2ea8 100644 --- a/pkgs/development/python-modules/cle/default.nix +++ b/pkgs/development/python-modules/cle/default.nix @@ -19,14 +19,14 @@ let # The binaries are following the argr projects release cycle - version = "9.2.106"; + version = "9.2.107"; # Binary files from https://github.com/angr/binaries (only used for testing and only here) binaries = fetchFromGitHub { owner = "angr"; repo = "binaries"; rev = "refs/tags/v${version}"; - hash = "sha256-f8lbofU5VYWDZ4BmSRE81X/3Rk8aj9yvEn9PM0lkZoM="; + hash = "sha256-7b3kjPoaJ9z1wdz125XsD0hj5FXj9DmUt8Hpqd/AjKs="; }; in buildPythonPackage rec { @@ -40,7 +40,7 @@ buildPythonPackage rec { owner = "angr"; repo = "cle"; rev = "refs/tags/v${version}"; - hash = "sha256-eOKAVqtGt86UJhdobKu4QYN5lC9YjZ+luZwwSm3J1xw="; + hash = "sha256-0dfnp0sIxO4Ln20c57Wb9B0E987v+xhrX53yriC+Qy0="; }; build-system = [ setuptools ]; diff --git a/pkgs/development/python-modules/clustershell/default.nix b/pkgs/development/python-modules/clustershell/default.nix index 5617813d74434..284e5a0eb53ae 100644 --- a/pkgs/development/python-modules/clustershell/default.nix +++ b/pkgs/development/python-modules/clustershell/default.nix @@ -69,10 +69,9 @@ buildPythonPackage rec { rm tests/TaskDistantPdshMixin.py rm tests/TaskDistantPdshTest.py rm tests/TaskRLimitsTest.py + rm tests/TreeGatewayTest.py nosetests -v \ - -e test_channel_ctl_shell_remote1 \ - -e test_channel_ctl_shell_remote2 \ -e test_fromall_grouplist \ -e test_rank_placeholder \ -e test_engine_on_the_fly_launch \ @@ -92,9 +91,6 @@ buildPythonPackage rec { -e testClushConfigSetRlimit \ -e testTimerInvalidateInHandler \ -e testTimerSetNextFireInHandler \ - -e test_channel_ctl_shell_mlocal1 \ - -e test_channel_ctl_shell_mlocal2 \ - -e test_channel_ctl_shell_mlocal3 \ -e test_node_placeholder \ tests/*.py ''; diff --git a/pkgs/development/python-modules/correctionlib/default.nix b/pkgs/development/python-modules/correctionlib/default.nix index 1485a42320202..a4f745f63caae 100644 --- a/pkgs/development/python-modules/correctionlib/default.nix +++ b/pkgs/development/python-modules/correctionlib/default.nix @@ -1,34 +1,43 @@ { lib, buildPythonPackage, - fetchPypi, + fetchFromGitHub, + + # build-system cmake, - numpy, scikit-build, setuptools, setuptools-scm, - wheel, - packaging, pybind11, + + zlib, + + # dependencies + numpy, + packaging, pydantic, rich, + + # checks awkward, pytestCheckHook, scipy, - zlib, }: buildPythonPackage rec { pname = "correctionlib"; - version = "2.5.0"; + version = "2.6.0"; pyproject = true; - src = fetchPypi { - inherit pname version; - hash = "sha256-H8QCdU6piBdqJEJOGVbsz+6eyMhFVuwTpIHKUoKaf4A="; + src = fetchFromGitHub { + owner = "cms-nanoAOD"; + repo = "correctionlib"; + rev = "refs/tags/v${version}"; + hash = "sha256-RI0wL+/6aNCV9PZMY9ZLNFLVYPm9kAyxcvLzLLM/T3Y="; + fetchSubmodules = true; }; - nativeBuildInputs = [ + build-system = [ cmake scikit-build setuptools @@ -38,7 +47,7 @@ buildPythonPackage rec { buildInputs = [ zlib ]; - propagatedBuildInputs = [ + dependencies = [ numpy packaging pydantic @@ -55,11 +64,12 @@ buildPythonPackage rec { pythonImportsCheck = [ "correctionlib" ]; - meta = with lib; { + meta = { description = "Provides a well-structured JSON data format for a wide variety of ad-hoc correction factors encountered in a typical HEP analysis"; mainProgram = "correction"; homepage = "https://cms-nanoaod.github.io/correctionlib/"; - license = with licenses; [ bsd3 ]; - maintainers = with maintainers; [ veprbl ]; + changelog = "https://github.com/cms-nanoAOD/correctionlib/releases/tag/v${version}"; + license = with lib.licenses; [ bsd3 ]; + maintainers = with lib.maintainers; [ veprbl ]; }; } diff --git a/pkgs/development/python-modules/cyclopts/default.nix b/pkgs/development/python-modules/cyclopts/default.nix index 479f57d744a20..56ecdd68354e8 100644 --- a/pkgs/development/python-modules/cyclopts/default.nix +++ b/pkgs/development/python-modules/cyclopts/default.nix @@ -19,7 +19,7 @@ buildPythonPackage rec { pname = "cyclopts"; - version = "2.7.0"; + version = "2.7.1"; pyproject = true; disabled = pythonOlder "3.8"; @@ -28,7 +28,7 @@ buildPythonPackage rec { owner = "BrianPugh"; repo = "cyclopts"; rev = "refs/tags/v${version}"; - hash = "sha256-oYYsHT8VZdqcOkMj++Bh7xjZ3JfJ9CiacFt92lBiQmc="; + hash = "sha256-JnSWKQFPrD8wadgz/4Ulisy6Mjc264JHX3PMOX+msac="; }; build-system = [ diff --git a/pkgs/development/python-modules/dazl/default.nix b/pkgs/development/python-modules/dazl/default.nix index 70cd5116c5854..7613795fabe9a 100644 --- a/pkgs/development/python-modules/dazl/default.nix +++ b/pkgs/development/python-modules/dazl/default.nix @@ -36,7 +36,8 @@ buildPythonPackage rec { patches = [ # Merged, remove this next release (fetchpatch { - url = "https://github.com/digital-asset/dazl-client/pull/428.patch"; + name = "428.patch"; # https://github.com/digital-asset/dazl-client/pull/428 + url = "https://github.com/digital-asset/dazl-client/commit/a68bad0471d22210f0abf31447a7732477de39d4.patch"; sha256 = "sha256-Gx9W1XkvMPg8FAOAXijDF5QnMbntk5mR0q5+o5i2KAE="; }) ]; diff --git a/pkgs/development/python-modules/deep-translator/default.nix b/pkgs/development/python-modules/deep-translator/default.nix index 0d9bb2e0c71ad..a0bbfd89d8e02 100644 --- a/pkgs/development/python-modules/deep-translator/default.nix +++ b/pkgs/development/python-modules/deep-translator/default.nix @@ -44,6 +44,6 @@ buildPythonPackage rec { homepage = "https://deep-translator.readthedocs.io"; changelog = "https://github.com/nidhaloff/deep-translator/releases/tag/v${version}"; license = licenses.asl20; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; }; } diff --git a/pkgs/development/python-modules/deltachat2/default.nix b/pkgs/development/python-modules/deltachat2/default.nix new file mode 100644 index 0000000000000..78d10679a3079 --- /dev/null +++ b/pkgs/development/python-modules/deltachat2/default.nix @@ -0,0 +1,42 @@ +{ lib +, fetchFromGitHub +, buildPythonPackage +, deltachat-rpc-server +, libdeltachat +, setuptools-scm +, substituteAll +}: + +buildPythonPackage rec { + pname = "deltachat2"; + version = "0.6.2"; + pyproject = true; + + src = fetchFromGitHub { + owner = "adbenitez"; + repo = "deltachat2"; + rev = "refs/tags/${version}"; + hash = "sha256-bp4bi+EeMaWP8zOaPp0eaPKn71F055QgMOOSDzIJUH4="; + }; + + patches = [ + (substituteAll { + src = ./paths.patch; + deltachatrpcserver = lib.getExe deltachat-rpc-server; + }) + ]; + + build-system = [ + setuptools-scm + ]; + + pythonImportsCheck = [ "deltachat2" ]; + + meta = { + description = "Client library for Delta Chat core JSON-RPC interface"; + homepage = "https://github.com/adbenitez/deltachat2"; + license = lib.licenses.mpl20; + mainProgram = "deltachat2"; + inherit (libdeltachat.meta) maintainers; + }; +} diff --git a/pkgs/development/python-modules/deltachat2/paths.patch b/pkgs/development/python-modules/deltachat2/paths.patch new file mode 100644 index 0000000000000..92cfe11fc6f0e --- /dev/null +++ b/pkgs/development/python-modules/deltachat2/paths.patch @@ -0,0 +1,13 @@ +diff --git a/deltachat2/transport.py b/deltachat2/transport.py +index a93dc7e..251947b 100644 +--- a/deltachat2/transport.py ++++ b/deltachat2/transport.py +@@ -71,7 +71,7 @@ class IOTransport: + # `process_group` is not supported before Python 3.11. + kwargs = {"preexec_fn": os.setpgrp, **self._kwargs} # noqa: PLW1509 + self.process = subprocess.Popen( # noqa: R1732 +- "deltachat-rpc-server", ++ "@deltachatrpcserver@", + stdin=subprocess.PIPE, + stdout=subprocess.PIPE, + **kwargs, diff --git a/pkgs/development/python-modules/django-soft-delete/default.nix b/pkgs/development/python-modules/django-soft-delete/default.nix new file mode 100644 index 0000000000000..05f2ebeb1c274 --- /dev/null +++ b/pkgs/development/python-modules/django-soft-delete/default.nix @@ -0,0 +1,31 @@ +{ + lib, + buildPythonPackage, + fetchPypi, + django, + setuptools, +}: + +buildPythonPackage rec { + pname = "django-soft-delete"; + version = "1.0.13"; + pyproject = true; + + src = fetchPypi { + inherit pname version; + hash = "sha256-RDwApUwG0jb/iAbDJgJD13XMU2WB1zd8J4UICxBBzh0="; + }; + + dependencies = [ django ]; + + build-system = [ setuptools ]; + + # No tests + doCheck = false; + + meta = { + description = "Soft delete models, managers, queryset for Django"; + homepage = "https://github.com/san4ezy/django_softdelete"; + license = lib.licenses.mit; + }; +} diff --git a/pkgs/development/python-modules/django-types/default.nix b/pkgs/development/python-modules/django-types/default.nix index e2520f4026fa1..523e155a68c5c 100644 --- a/pkgs/development/python-modules/django-types/default.nix +++ b/pkgs/development/python-modules/django-types/default.nix @@ -25,6 +25,6 @@ buildPythonPackage rec { description = "Type stubs for Django"; homepage = "https://github.com/sbdchd/django-types"; license = licenses.mit; - maintainers = with maintainers; [ thubrecht ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/development/python-modules/dnf4/default.nix b/pkgs/development/python-modules/dnf4/default.nix index bafa31d9d0255..3696087cd5afb 100644 --- a/pkgs/development/python-modules/dnf4/default.nix +++ b/pkgs/development/python-modules/dnf4/default.nix @@ -18,7 +18,7 @@ in buildPythonPackage rec { pname = "dnf4"; - version = "4.20.0"; + version = "4.21.0"; format = "other"; outputs = [ @@ -31,7 +31,7 @@ buildPythonPackage rec { owner = "rpm-software-management"; repo = "dnf"; rev = version; - hash = "sha256-0BwnUb0ZORjJmB70Jca/CnyysIOGB7azVzUUIGplmso="; + hash = "sha256-iDSjhAwas2ZljWN42/jG//Mu0HJYijCRqVTdnunjxkI="; }; patches = [ ./fix-python-install-dir.patch ]; diff --git a/pkgs/development/python-modules/dunamai/default.nix b/pkgs/development/python-modules/dunamai/default.nix index 6631ac27fda12..2ac7229c325b8 100644 --- a/pkgs/development/python-modules/dunamai/default.nix +++ b/pkgs/development/python-modules/dunamai/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "dunamai"; - version = "1.19.2"; + version = "1.20.0"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "mtkennerly"; repo = "dunamai"; rev = "refs/tags/v${version}"; - hash = "sha256-oLJlBytdp9uVdKEdYDMz/IYnPP7XVnCUcThKO3IiW10="; + hash = "sha256-K7G5BiUm8QTRbw0W3ebTld7CAZI8sYSnRsD7vQhCptE="; }; nativeBuildInputs = [ poetry-core ]; diff --git a/pkgs/development/python-modules/dvclive/default.nix b/pkgs/development/python-modules/dvclive/default.nix index 33adbdf07a08b..45cdd3c924d20 100644 --- a/pkgs/development/python-modules/dvclive/default.nix +++ b/pkgs/development/python-modules/dvclive/default.nix @@ -33,7 +33,7 @@ buildPythonPackage rec { pname = "dvclive"; - version = "3.46.0"; + version = "3.46.1"; pyproject = true; disabled = pythonOlder "3.9"; @@ -42,7 +42,7 @@ buildPythonPackage rec { owner = "iterative"; repo = "dvclive"; rev = "refs/tags/${version}"; - hash = "sha256-yIViKlkCdoG2vSZdScL38fZd9musLRKzBd9wSR6lJdk="; + hash = "sha256-ifr8gsGSOIBPC07JcFcV97yV4Io5J2uiMf2ucmySiWc="; }; build-system = [ setuptools-scm ]; diff --git a/pkgs/development/python-modules/env-canada/default.nix b/pkgs/development/python-modules/env-canada/default.nix index af882a3640e30..a8784aacb5dc2 100644 --- a/pkgs/development/python-modules/env-canada/default.nix +++ b/pkgs/development/python-modules/env-canada/default.nix @@ -17,7 +17,7 @@ buildPythonPackage rec { pname = "env-canada"; - version = "0.6.2"; + version = "0.7.0"; pyproject = true; disabled = pythonOlder "3.8"; @@ -26,7 +26,7 @@ buildPythonPackage rec { owner = "michaeldavie"; repo = "env_canada"; rev = "refs/tags/v${version}"; - hash = "sha256-2lrZpjOdijE/udGRzUXT63xI+f9yI+04arfWdt6fMSA="; + hash = "sha256-ND1QObDdn6tBGNlnnVadNv6ibYYpOoo2HZEXIMlfwyc="; }; build-system = [ setuptools ]; diff --git a/pkgs/development/python-modules/extension-helpers/default.nix b/pkgs/development/python-modules/extension-helpers/default.nix new file mode 100644 index 0000000000000..56f6a8f4d0a8d --- /dev/null +++ b/pkgs/development/python-modules/extension-helpers/default.nix @@ -0,0 +1,57 @@ +{ + lib, + buildPythonPackage, + cython, + fetchFromGitHub, + pip, + pytestCheckHook, + pythonOlder, + setuptools-scm, + setuptools, + tomli, + wheel, +}: + +buildPythonPackage rec { + pname = "extension-helpers"; + version = "1.1.1"; + pyproject = true; + + disabled = pythonOlder "3.8"; + + src = fetchFromGitHub { + owner = "astropy"; + repo = "extension-helpers"; + rev = "refs/tags/v${version}"; + hash = "sha256-pYCSLb6uuQ9ZtMZOQH0DxLlfgFv3tgH+AL35IN71cNI="; + }; + + build-system = [ + setuptools + setuptools-scm + ]; + + dependencies = [ setuptools ] ++ lib.optionals (pythonOlder "3.11") [ tomli ]; + + nativeCheckInputs = [ + pytestCheckHook + pip + ]; + + pythonImportsCheck = [ "extension_helpers" ]; + + pytestFlagsArray = [ "extension_helpers/tests" ]; + + disabledTests = [ + # Test require network access + "test_only_pyproject" + ]; + + meta = with lib; { + description = "Helpers to assist with building Python packages with compiled C/Cython extensions"; + homepage = "https://github.com/astropy/extension-helpers"; + changelog = "https://github.com/astropy/extension-helpers/blob/${version}/CHANGES.md"; + license = licenses.bsd3; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/fastcore/default.nix b/pkgs/development/python-modules/fastcore/default.nix index 4bd725f1865d3..57eebb7d6180b 100644 --- a/pkgs/development/python-modules/fastcore/default.nix +++ b/pkgs/development/python-modules/fastcore/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "fastcore"; - version = "1.5.46"; + version = "1.5.47"; pyproject = true; disabled = pythonOlder "3.8"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "fastai"; repo = "fastcore"; rev = "refs/tags/${version}"; - hash = "sha256-Jcnex5gDNTQqF0cL9FEdLx5vuNSsAicl0RvivC8QwSM="; + hash = "sha256-kQUVYOHMR6R2o5rROpwBeVW4lqKqkcYT3O9BRyKDNmE="; }; build-system = [ setuptools ]; diff --git a/pkgs/development/python-modules/fastembed/default.nix b/pkgs/development/python-modules/fastembed/default.nix index 005e514ff3c23..f55f8a78ac246 100644 --- a/pkgs/development/python-modules/fastembed/default.nix +++ b/pkgs/development/python-modules/fastembed/default.nix @@ -25,7 +25,7 @@ buildPythonPackage rec { pname = "fastembed"; - version = "0.3.0"; + version = "0.3.1"; pyproject = true; disabled = pythonOlder "3.8"; @@ -34,7 +34,7 @@ buildPythonPackage rec { owner = "qdrant"; repo = "fastembed"; rev = "refs/tags/v${version}"; - hash = "sha256-Tfj0YdUW/Nnvn4+RoOWj9l0gDkWbpVgiADA09ht4xxM="; + hash = "sha256-bFIikLogTxrwLNR+NOnnRjKGneZ63N7CBuu81z85xZo="; }; build-system = [ poetry-core ]; diff --git a/pkgs/development/python-modules/fleep/default.nix b/pkgs/development/python-modules/fleep/default.nix index ce869249649ca..4f178a836c22f 100644 --- a/pkgs/development/python-modules/fleep/default.nix +++ b/pkgs/development/python-modules/fleep/default.nix @@ -31,6 +31,6 @@ buildPythonPackage rec { description = "File format determination library"; homepage = "https://github.com/floyernick/fleep-py"; license = licenses.mit; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; }; } diff --git a/pkgs/development/python-modules/gaphas/default.nix b/pkgs/development/python-modules/gaphas/default.nix index e038dd92ab1e3..c0aeebe3d9469 100644 --- a/pkgs/development/python-modules/gaphas/default.nix +++ b/pkgs/development/python-modules/gaphas/default.nix @@ -43,6 +43,6 @@ buildPythonPackage rec { homepage = "https://github.com/gaphor/gaphas"; changelog = "https://github.com/gaphor/gaphas/releases/tag/${version}"; license = licenses.asl20; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; }; } diff --git a/pkgs/development/python-modules/generic/default.nix b/pkgs/development/python-modules/generic/default.nix index b9bae5af2be6d..30674f2090526 100644 --- a/pkgs/development/python-modules/generic/default.nix +++ b/pkgs/development/python-modules/generic/default.nix @@ -27,7 +27,7 @@ buildPythonPackage rec { meta = with lib; { description = "Generic programming (Multiple dispatch) library for Python"; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; homepage = "https://github.com/gaphor/generic"; changelog = "https://github.com/gaphor/generic/releases/tag/${version}"; license = licenses.bsd3; diff --git a/pkgs/development/python-modules/genie-partner-sdk/default.nix b/pkgs/development/python-modules/genie-partner-sdk/default.nix index 0a70a198e25ab..f55cff75cd6e4 100644 --- a/pkgs/development/python-modules/genie-partner-sdk/default.nix +++ b/pkgs/development/python-modules/genie-partner-sdk/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "genie-partner-sdk"; - version = "1.0.3"; + version = "1.0.4"; pyproject = true; disabled = pythonOlder "3.11"; @@ -17,7 +17,7 @@ buildPythonPackage rec { src = fetchPypi { inherit version; pname = "genie_partner_sdk"; - hash = "sha256-/Pu0pULepRpAdUfu2SQjK4xCSe3FWWNT9AqZEASoZSE="; + hash = "sha256-DwbIe1pq1YKAA3hRlhYCVJ9xtvfxvoqLLjDSQicUKuw="; }; nativeBuildInputs = [ hatchling ]; diff --git a/pkgs/development/python-modules/goodwe/default.nix b/pkgs/development/python-modules/goodwe/default.nix index 1616f17a48951..2bc0b940952a4 100644 --- a/pkgs/development/python-modules/goodwe/default.nix +++ b/pkgs/development/python-modules/goodwe/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "goodwe"; - version = "0.4.7"; + version = "0.4.8"; pyproject = true; disabled = pythonOlder "3.8"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "marcelblijleven"; repo = "goodwe"; rev = "refs/tags/v${version}"; - hash = "sha256-Z+CTwG9aJ/HFnrWXJXpUDgh60/crxaBXJuBSozZIoxI="; + hash = "sha256-EsMv4hzGsAV9OTFo2b/omM4hx7XxUcdO6rrMzQ3DmNQ="; }; postPatch = '' diff --git a/pkgs/development/python-modules/google-cloud-pubsub/default.nix b/pkgs/development/python-modules/google-cloud-pubsub/default.nix index f9ce73cf823c2..8ba2f84e072f3 100644 --- a/pkgs/development/python-modules/google-cloud-pubsub/default.nix +++ b/pkgs/development/python-modules/google-cloud-pubsub/default.nix @@ -18,14 +18,14 @@ buildPythonPackage rec { pname = "google-cloud-pubsub"; - version = "2.21.3"; + version = "2.21.4"; pyproject = true; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-30THmk17+1rfpnVBPjuRu74G6R0nFaFfklFAsFcVu30="; + hash = "sha256-LLjHaYrb/qBEjbbIm3iqchf84HweN7RtPlNfoWM/OuY="; }; build-system = [ setuptools ]; diff --git a/pkgs/development/python-modules/gwcs/default.nix b/pkgs/development/python-modules/gwcs/default.nix new file mode 100644 index 0000000000000..a6dd4fcae5072 --- /dev/null +++ b/pkgs/development/python-modules/gwcs/default.nix @@ -0,0 +1,61 @@ +{ + lib, + asdf-astropy, + asdf-wcs-schemas, + asdf, + astropy, + buildPythonPackage, + fetchFromGitHub, + numpy, + pytest-astropy, + pytestCheckHook, + pythonOlder, + scipy, + setuptools-scm, + setuptools, + tomli, +}: + +buildPythonPackage rec { + pname = "gwcs"; + version = "0.21.0"; + pyproject = true; + + disabled = pythonOlder "3.10"; + + src = fetchFromGitHub { + owner = "spacetelescope"; + repo = "gwcs"; + rev = "refs/tags/${version}"; + hash = "sha256-76h2lDIaPHj7HarVcE0t5k6CA/hLCwquaz+2wMsKj+Y="; + }; + + build-system = [ + setuptools + setuptools-scm + ]; + + dependencies = [ + asdf + asdf-astropy + asdf-wcs-schemas + astropy + numpy + scipy + ]; + + nativeCheckInputs = [ + pytest-astropy + pytestCheckHook + ]; + + pythonImportsCheck = [ "gwcs" ]; + + meta = with lib; { + description = "Module to manage the Generalized World Coordinate System"; + homepage = "https://github.com/spacetelescope/gwcs"; + changelog = "https://github.com/spacetelescope/gwcs/blob/${version}/CHANGES.rst"; + license = licenses.bsd3; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/hatch-odoo/default.nix b/pkgs/development/python-modules/hatch-odoo/default.nix new file mode 100644 index 0000000000000..91a0ef99efbd6 --- /dev/null +++ b/pkgs/development/python-modules/hatch-odoo/default.nix @@ -0,0 +1,40 @@ +{ + buildPythonPackage, + fetchFromGitHub, + hatch-vcs, + hatchling, + lib, + manifestoo-core, + pythonOlder, + tomli, +}: +buildPythonPackage rec { + pname = "hatch-odoo"; + version = "0.1"; + format = "pyproject"; + + src = fetchFromGitHub { + owner = "acsone"; + repo = pname; + rev = version; + sha256 = "sha256-+KM3tpeQ4e53bVhUeWUSfyuIzPRvWkjZi4S/gH4UHVY="; + }; + + buildInputs = [hatch-vcs]; + + propagatedBuildInputs = + [ + hatchling + manifestoo-core + ] + ++ lib.optionals (pythonOlder "3.11") [ + tomli + ]; + + meta = with lib; { + description = "A hatch plugin to develop and package Odoo projects"; + homepage = "https://github.com/acsone/hatch-odoo"; + license = licenses.mit; + maintainers = with maintainers; [yajo]; + }; +} diff --git a/pkgs/development/python-modules/hdate/default.nix b/pkgs/development/python-modules/hdate/default.nix index 214aa83fbbc06..c6b9bbcde8472 100644 --- a/pkgs/development/python-modules/hdate/default.nix +++ b/pkgs/development/python-modules/hdate/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "hdate"; - version = "0.10.9"; + version = "0.10.11"; pyproject = true; disabled = pythonOlder "3.8"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "py-libhdate"; repo = "py-libhdate"; rev = "refs/tags/v${version}"; - hash = "sha256-Cni8GegB8GAhtIKKCgSn3QavE/Gi9Rcm9v0grToMyq4="; + hash = "sha256-HmdXTvtNiIE2XPFhqs7WpcceEQU7F7RsLFp6/+63yDw="; }; pythonRelaxDeps = [ diff --git a/pkgs/development/python-modules/hdbscan/default.nix b/pkgs/development/python-modules/hdbscan/default.nix index 77b3f348d001e..d3de4a76bd482 100644 --- a/pkgs/development/python-modules/hdbscan/default.nix +++ b/pkgs/development/python-modules/hdbscan/default.nix @@ -14,12 +14,12 @@ buildPythonPackage rec { pname = "hdbscan"; - version = "0.8.36"; + version = "0.8.37"; format = "setuptools"; src = fetchPypi { inherit pname version; - hash = "sha256-05istp4MTr31OcK6WDnFIzYOyBTzAPqn8vh96PJXr1g="; + hash = "sha256-3EeHE0DRhT5WnF2Pb4/IB+nDEx7dKRafx3pHBnSqibA="; }; pythonRemoveDeps = [ "cython" ]; diff --git a/pkgs/development/python-modules/hocr-tools/default.nix b/pkgs/development/python-modules/hocr-tools/default.nix index 609590b486232..40d2653d6c0d2 100644 --- a/pkgs/development/python-modules/hocr-tools/default.nix +++ b/pkgs/development/python-modules/hocr-tools/default.nix @@ -32,6 +32,6 @@ buildPythonPackage rec { Tools for manipulating and evaluating the hOCR format for representing multi-lingual OCR results by embedding them into HTML"; homepage = "https://github.com/tmbdev/hocr-tools"; license = licenses.asl20; - maintainers = [ maintainers.kiwi ]; + maintainers = [ ]; }; } diff --git a/pkgs/development/python-modules/htmllaundry/default.nix b/pkgs/development/python-modules/htmllaundry/default.nix deleted file mode 100644 index 9c284a09ff610..0000000000000 --- a/pkgs/development/python-modules/htmllaundry/default.nix +++ /dev/null @@ -1,35 +0,0 @@ -{ - lib, - buildPythonPackage, - fetchPypi, - nose, - six, - lxml, -}: - -buildPythonPackage rec { - pname = "htmllaundry"; - version = "2.2"; - format = "setuptools"; - - src = fetchPypi { - inherit pname version; - sha256 = "9124f067d3c06ef2613e2cc246b2fde2299802280a8b0e60dc504137085f0334"; - }; - - buildInputs = [ nose ]; - propagatedBuildInputs = [ - six - lxml - ]; - - # some tests fail, probably because of changes in lxml - # not relevant for me, if releavnt for you, fix it... - doCheck = false; - - meta = with lib; { - description = "Simple HTML cleanup utilities"; - license = licenses.bsd3; - homepage = "https://pypi.org/project/htmllaundry/"; - }; -} diff --git a/pkgs/development/python-modules/ilua/default.nix b/pkgs/development/python-modules/ilua/default.nix index de4712f92fea8..4e4899ebc74d5 100644 --- a/pkgs/development/python-modules/ilua/default.nix +++ b/pkgs/development/python-modules/ilua/default.nix @@ -40,6 +40,6 @@ buildPythonPackage rec { mainProgram = "ilua"; homepage = "https://github.com/guysv/ilua"; license = licenses.gpl2Only; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; }; } diff --git a/pkgs/development/python-modules/jsonargparse/default.nix b/pkgs/development/python-modules/jsonargparse/default.nix index 3b65beacc6177..ec01c1beffe3f 100644 --- a/pkgs/development/python-modules/jsonargparse/default.nix +++ b/pkgs/development/python-modules/jsonargparse/default.nix @@ -26,7 +26,7 @@ buildPythonPackage rec { pname = "jsonargparse"; - version = "4.29.0"; + version = "4.30.0"; pyproject = true; disabled = pythonOlder "3.11"; @@ -35,7 +35,7 @@ buildPythonPackage rec { owner = "omni-us"; repo = "jsonargparse"; rev = "refs/tags/v${version}"; - hash = "sha256-L+bGyn6O3lGu4FPclNFUeIzQhpznBxdkofUS5yCRM3Y="; + hash = "sha256-jeQOnJ8dLUbp60Nk5v4NYKVR8VYlGz08QHIfQotO2uY="; }; build-system = [ setuptools ]; diff --git a/pkgs/development/python-modules/keyboard/default.nix b/pkgs/development/python-modules/keyboard/default.nix index 66f5efb5693cc..7620e272ea719 100644 --- a/pkgs/development/python-modules/keyboard/default.nix +++ b/pkgs/development/python-modules/keyboard/default.nix @@ -27,7 +27,7 @@ buildPythonPackage rec { description = "Hook and simulate keyboard events on Windows and Linux"; homepage = "https://github.com/boppreh/keyboard"; license = licenses.mit; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; platforms = platforms.linux; }; } diff --git a/pkgs/development/python-modules/kiss-headers/default.nix b/pkgs/development/python-modules/kiss-headers/default.nix index f12ee172bed56..e7e52dacd187f 100644 --- a/pkgs/development/python-modules/kiss-headers/default.nix +++ b/pkgs/development/python-modules/kiss-headers/default.nix @@ -43,6 +43,6 @@ buildPythonPackage rec { description = "Python package for HTTP/1.1 style headers"; homepage = "https://github.com/Ousret/kiss-headers"; license = licenses.mit; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; }; } diff --git a/pkgs/development/python-modules/klaus/default.nix b/pkgs/development/python-modules/klaus/default.nix index 73e9df8c0053f..b568e57c9ff13 100644 --- a/pkgs/development/python-modules/klaus/default.nix +++ b/pkgs/development/python-modules/klaus/default.nix @@ -16,14 +16,14 @@ buildPythonPackage rec { pname = "klaus"; - version = "3.0.0"; + version = "3.0.1"; format = "setuptools"; src = fetchFromGitHub { owner = "jonashaag"; repo = pname; rev = version; - hash = "sha256-BcLlvZ9Ip3laL0cLkqK+mhB+S7ubB4TuZ0VKXOOX3oA="; + hash = "sha256-GflSDhBmMsQ34o3ApraEJ6GmlXXP2kK6WW3lsfr6b7g="; }; prePatch = '' diff --git a/pkgs/development/python-modules/lacuscore/default.nix b/pkgs/development/python-modules/lacuscore/default.nix index 37e1e76001b65..cd18863618ad5 100644 --- a/pkgs/development/python-modules/lacuscore/default.nix +++ b/pkgs/development/python-modules/lacuscore/default.nix @@ -17,7 +17,7 @@ buildPythonPackage rec { pname = "lacuscore"; - version = "1.9.5"; + version = "1.9.6"; pyproject = true; disabled = pythonOlder "3.8"; @@ -26,7 +26,7 @@ buildPythonPackage rec { owner = "ail-project"; repo = "LacusCore"; rev = "refs/tags/v${version}"; - hash = "sha256-PSxNBgehKOWjf6y/RidIegE+P5rg9OzU4p8ZZrXAdq4="; + hash = "sha256-SCObCYcZ+aDzWOkE5tzkKMkgAP/h7HDNyHXMFmYjiHQ="; }; pythonRelaxDeps = [ diff --git a/pkgs/development/python-modules/llama-index-core/default.nix b/pkgs/development/python-modules/llama-index-core/default.nix index 3d0d9921c6881..729fc0ac0d626 100644 --- a/pkgs/development/python-modules/llama-index-core/default.nix +++ b/pkgs/development/python-modules/llama-index-core/default.nix @@ -46,7 +46,7 @@ in buildPythonPackage rec { pname = "llama-index-core"; - version = "0.10.45"; + version = "0.10.47"; pyproject = true; disabled = pythonOlder "3.8"; @@ -55,7 +55,7 @@ buildPythonPackage rec { owner = "run-llama"; repo = "llama_index"; rev = "refs/tags/v${version}"; - hash = "sha256-mI2Cx3ZMW8cLiA7wIo/QwxZrlBVR9W/TMAD5l0TjBQo="; + hash = "sha256-Rq7Mz9aN6SHLZ5UzDb2i90j7wP+SlYJa9b14Yu00Cuc="; }; sourceRoot = "${src.name}/${pname}"; diff --git a/pkgs/development/python-modules/llama-index-embeddings-huggingface/default.nix b/pkgs/development/python-modules/llama-index-embeddings-huggingface/default.nix index c61fa49b9a9c7..4da4ef2ab654f 100644 --- a/pkgs/development/python-modules/llama-index-embeddings-huggingface/default.nix +++ b/pkgs/development/python-modules/llama-index-embeddings-huggingface/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "llama-index-embeddings-huggingface"; - version = "0.2.1"; + version = "0.2.2"; pyproject = true; disabled = pythonOlder "3.8"; @@ -18,7 +18,7 @@ buildPythonPackage rec { src = fetchPypi { pname = "llama_index_embeddings_huggingface"; inherit version; - hash = "sha256-usaKE61RMaBV2j7xdMynDhUjBCbux9Rxs3LoHoSJ2Ig="; + hash = "sha256-Q7KXh0DSkpGuTHVmki0rHHVD3JeeJoeUtXjhoq37Qxk="; }; build-system = [ poetry-core ]; diff --git a/pkgs/development/python-modules/llama-index-graph-stores-neo4j/default.nix b/pkgs/development/python-modules/llama-index-graph-stores-neo4j/default.nix index 52ede954ac2d1..71b90f73f1964 100644 --- a/pkgs/development/python-modules/llama-index-graph-stores-neo4j/default.nix +++ b/pkgs/development/python-modules/llama-index-graph-stores-neo4j/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "llama-index-graph-stores-neo4j"; - version = "0.2.4"; + version = "0.2.5"; pyproject = true; disabled = pythonOlder "3.8"; @@ -18,7 +18,7 @@ buildPythonPackage rec { src = fetchPypi { pname = "llama_index_graph_stores_neo4j"; inherit version; - hash = "sha256-mOB08Ui6MTnCQUBlc666PRDjoSf2cjPUf1WO34VMK9s="; + hash = "sha256-K+k3tsELhF6TXVK/voMRYpb0vVkGQpkzYnB9syCLmoY="; }; build-system = [ poetry-core ]; diff --git a/pkgs/development/python-modules/loadcredential/default.nix b/pkgs/development/python-modules/loadcredential/default.nix deleted file mode 100644 index 239f9ac16175f..0000000000000 --- a/pkgs/development/python-modules/loadcredential/default.nix +++ /dev/null @@ -1,34 +0,0 @@ -{ - lib, - buildPythonPackage, - fetchFromGitHub, - setuptools, - wheel, -}: - -buildPythonPackage rec { - pname = "loadcredential"; - version = "1.1"; - pyproject = true; - - src = fetchFromGitHub { - owner = "Tom-Hubrecht"; - repo = "loadcredential"; - rev = "v${version}"; - hash = "sha256-GXpMqGLDmDnTGa9cBYe0CP3Evm5sQ3AK9u6k3mLAW34="; - }; - - build-system = [ - setuptools - wheel - ]; - - pythonImportsCheck = [ "loadcredential" ]; - - meta = { - description = "Simple python package to read credentials passed through systemd's LoadCredential, with a fallback on env variables "; - homepage = "https://github.com/Tom-Hubrecht/loadcredential"; - license = lib.licenses.mit; - maintainers = with lib.maintainers; [ thubrecht ]; - }; -} diff --git a/pkgs/development/python-modules/losant-rest/default.nix b/pkgs/development/python-modules/losant-rest/default.nix index 81157ed9d23e6..09321eb17d678 100644 --- a/pkgs/development/python-modules/losant-rest/default.nix +++ b/pkgs/development/python-modules/losant-rest/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "losant-rest"; - version = "1.19.7"; + version = "1.19.8"; pyproject = true; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "Losant"; repo = "losant-rest-python"; rev = "refs/tags/v${version}"; - hash = "sha256-gn8YTnCAmAcmQxpgtitk2eRy3spveuU0peeHu/iSnCE="; + hash = "sha256-CErC2Pwdw8CzV423uToysGaz92cBNyO3tLLuLozc0MU="; }; build-system = [ setuptools ]; diff --git a/pkgs/development/python-modules/mathutils/default.nix b/pkgs/development/python-modules/mathutils/default.nix new file mode 100644 index 0000000000000..97442eba2b855 --- /dev/null +++ b/pkgs/development/python-modules/mathutils/default.nix @@ -0,0 +1,33 @@ +{ lib +, buildPythonPackage +, fetchFromGitLab + +# build-system +, setuptools +}: + +buildPythonPackage rec { + pname = "mathutils"; + version = "3.3.0"; + pyproject = true; + + src = fetchFromGitLab { + owner = "ideasman42"; + repo = "blender-mathutils"; + rev = "d63d623a9e580a567eb6acb7dbed7cad0e4f8c28"; + hash = "sha256-c28kt2ADw4wHNLN0CBPcJU/kqm6g679QRaICk4WwaBc="; + }; + + build-system = [ + setuptools + ]; + + pythonImportsCheck = [ "mathutils" ]; + + meta = with lib; { + description = "A general math utilities library providing Matrix, Vector, Quaternion, Euler and Color classes, written in C for speed"; + homepage = "https://gitlab.com/ideasman42/blender-mathutils"; + license = licenses.gpl2Plus; + maintainers = with maintainers; [ autra ]; + }; +} diff --git a/pkgs/development/python-modules/messagebird/default.nix b/pkgs/development/python-modules/messagebird/default.nix index e832447252516..302ce5087bc60 100644 --- a/pkgs/development/python-modules/messagebird/default.nix +++ b/pkgs/development/python-modules/messagebird/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "messagebird"; - version = "2.1.0"; + version = "2.2.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "messagebird"; repo = "python-rest-api"; rev = version; - hash = "sha256-2KVAxdHT5+Ie3ZRxXZhU0hLOtHWjIiJi+ferkYTlSn0="; + hash = "sha256-OiLhnmZ725VbyoOHvSf4nKQRA7JsxqcOv0VKBL6rUtU="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/motionblindsble/default.nix b/pkgs/development/python-modules/motionblindsble/default.nix new file mode 100644 index 0000000000000..d1708e08bee43 --- /dev/null +++ b/pkgs/development/python-modules/motionblindsble/default.nix @@ -0,0 +1,55 @@ +{ + lib, + bleak-retry-connector, + bleak, + buildPythonPackage, + fetchFromGitHub, + pycryptodome, + pytest-asyncio, + pytestCheckHook, + pythonOlder, + setuptools, +}: + +buildPythonPackage rec { + pname = "motionblindsble"; + version = "0.1.0"; + pyproject = true; + + disabled = pythonOlder "3.9"; + + src = fetchFromGitHub { + owner = "LennP"; + repo = "motionblindsble"; + rev = "refs/tags/${version}"; + hash = "sha256-jWd+7jRuJ8UIIZjx8+7BNCwIo+o4mxAFB2csytmnuso="; + }; + + postPatch = '' + substituteInPlace setup.py \ + --replace-fail "{{VERSION_PLACEHOLDER}}" "${version}" + ''; + + build-system = [ setuptools ]; + + dependencies = [ + bleak + bleak-retry-connector + pycryptodome + ]; + + nativeCheckInputs = [ + pytest-asyncio + pytestCheckHook + ]; + + pythonImportsCheck = [ "motionblindsble" ]; + + meta = with lib; { + description = "Module to interface with Motionblinds motors using Bluetooth Low Energy (BLE)"; + homepage = "https://github.com/LennP/motionblindsble"; + changelog = "https://github.com/LennP/motionblindsble/releases/tag/${version}"; + license = licenses.mit; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/netdata-pandas/default.nix b/pkgs/development/python-modules/netdata-pandas/default.nix new file mode 100644 index 0000000000000..01fb2d65c65c2 --- /dev/null +++ b/pkgs/development/python-modules/netdata-pandas/default.nix @@ -0,0 +1,42 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, setuptools +, pandas +, requests +, trio +, asks +}: + +buildPythonPackage rec { + pname = "netdata-pandas"; + version = "0.0.41"; + pyproject = true; + + src = fetchFromGitHub { + owner = "netdata"; + repo = "netdata-pandas"; + rev = "v${version}"; + hash = "sha256-AXt8BKWyM3glm5hrRryb+vBzs3z2x61HhbR6DDZkh9o="; + }; + + nativeBuildInputs = [ + setuptools + ]; + + propagatedBuildInputs = [ + pandas + requests + trio + asks + ]; + + pythonImportsCheck = [ "netdata_pandas" ]; + + meta = with lib; { + description = "A helper library to pull data from the netdata REST API into a pandas dataframe."; + homepage = "https://github.com/netdata/netdata-pandas"; + license = licenses.asl20; + maintainers = with maintainers; [ raitobezarius ]; + }; +} diff --git a/pkgs/development/python-modules/nltk/default.nix b/pkgs/development/python-modules/nltk/default.nix index 7ce26cdb7a1c1..2c71a15a021e8 100644 --- a/pkgs/development/python-modules/nltk/default.nix +++ b/pkgs/development/python-modules/nltk/default.nix @@ -44,6 +44,6 @@ buildPythonPackage rec { mainProgram = "nltk"; homepage = "http://nltk.org/"; license = licenses.asl20; - maintainers = with maintainers; [ lheckemann ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/development/python-modules/oauthenticator/default.nix b/pkgs/development/python-modules/oauthenticator/default.nix index b8caf2c9bcfe0..1f4ff0ea627f7 100644 --- a/pkgs/development/python-modules/oauthenticator/default.nix +++ b/pkgs/development/python-modules/oauthenticator/default.nix @@ -21,14 +21,14 @@ buildPythonPackage rec { pname = "oauthenticator"; - version = "16.3.0"; + version = "16.3.1"; pyproject = true; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-QMddGJUfafXoBxMCjlx1lH45a4Bab3AP4j8Px7JxYaQ="; + hash = "sha256-gFhhOCcmorkrLxrup9fICh5ueCrc64fxfuZXTQG1tMk="; }; postPatch = '' diff --git a/pkgs/development/python-modules/ocrmypdf/default.nix b/pkgs/development/python-modules/ocrmypdf/default.nix index da509f319fab9..b9b961e6c9c40 100644 --- a/pkgs/development/python-modules/ocrmypdf/default.nix +++ b/pkgs/development/python-modules/ocrmypdf/default.nix @@ -100,7 +100,6 @@ buildPythonPackage rec { mit ]; maintainers = with maintainers; [ - kiwi dotlambda ]; changelog = "https://github.com/ocrmypdf/OCRmyPDF/blob/${src.rev}/docs/release_notes.rst"; diff --git a/pkgs/development/python-modules/openai/default.nix b/pkgs/development/python-modules/openai/default.nix index 82688e240206b..ac6fb58446fcd 100644 --- a/pkgs/development/python-modules/openai/default.nix +++ b/pkgs/development/python-modules/openai/default.nix @@ -25,7 +25,7 @@ buildPythonPackage rec { pname = "openai"; - version = "1.34.0"; + version = "1.35.1"; pyproject = true; disabled = pythonOlder "3.7.1"; @@ -34,7 +34,7 @@ buildPythonPackage rec { owner = "openai"; repo = "openai-python"; rev = "refs/tags/v${version}"; - hash = "sha256-ES0lA/eMll35MhL1evegyp5VOIdHPTRF1Jckl+n250E="; + hash = "sha256-GOduJdMNVWK3Hl05mQI7kpgzugEX2MJKEqTyR/ldW9Q="; }; build-system = [ diff --git a/pkgs/development/python-modules/peaqevcore/default.nix b/pkgs/development/python-modules/peaqevcore/default.nix index 3c55be1d16698..3f23d3aaffa52 100644 --- a/pkgs/development/python-modules/peaqevcore/default.nix +++ b/pkgs/development/python-modules/peaqevcore/default.nix @@ -8,14 +8,14 @@ buildPythonPackage rec { pname = "peaqevcore"; - version = "19.10.12"; + version = "19.10.24"; pyproject = true; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-9k6bFEZychZXr/vE5AznQ36hhm/JXgjByM9wSZmyzts="; + hash = "sha256-jpJVYANreHUW6vclkdNdnaFb/QxFfJf0nuTBl3K3qBY="; }; postPatch = '' diff --git a/pkgs/development/python-modules/peco/default.nix b/pkgs/development/python-modules/peco/default.nix index 9b2001789cd28..22f5d29faf8e9 100644 --- a/pkgs/development/python-modules/peco/default.nix +++ b/pkgs/development/python-modules/peco/default.nix @@ -3,24 +3,24 @@ aiohttp, buildPythonPackage, fetchPypi, + poetry-core, pydantic, pythonOlder, - setuptools, }: buildPythonPackage rec { pname = "peco"; - version = "0.0.30"; + version = "0.1.1"; pyproject = true; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-a3MPqtbDftbLGtpJ66CFVC5wJFa9L3dqOKPfBZCaHpM="; + hash = "sha256-p9Uxckc88HbUUtpg3fHGwYojU57mCuRzh3M1RAjKLX0="; }; - build-system = [ setuptools ]; + build-system = [ poetry-core ]; dependencies = [ aiohttp @@ -35,6 +35,7 @@ buildPythonPackage rec { meta = with lib; { description = "Library for interacting with the PECO outage map"; homepage = "https://github.com/IceBotYT/peco-outage-api"; + changelog = "https://github.com/IceBotYT/peco-outage-api/releases/tag/${version}"; license = with licenses; [ mit ]; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/python-modules/pgcli/default.nix b/pkgs/development/python-modules/pgcli/default.nix index 4f21f9bb05b14..38bbed27eef56 100644 --- a/pkgs/development/python-modules/pgcli/default.nix +++ b/pkgs/development/python-modules/pgcli/default.nix @@ -15,6 +15,7 @@ keyring, pendulum, pytestCheckHook, + setuptools, sshtunnel, mock, }: @@ -23,12 +24,12 @@ # integrating with ipython-sql buildPythonPackage rec { pname = "pgcli"; - version = "4.0.1"; - format = "setuptools"; + version = "4.1.0"; + pyproject = true; src = fetchPypi { inherit pname version; - hash = "sha256-8v7qIJnOGtXoqdXZOw7a9g3GHpeyG3XpHZcjk5zlO9I="; + hash = "sha256-P9Fsi1G9AUX/YYwscyZLzYVLqGaqIG1PB2hR9kG5shU="; }; propagatedBuildInputs = [ @@ -46,12 +47,16 @@ buildPythonPackage rec { sshtunnel ]; + nativeBuildInputs = [ setuptools ]; nativeCheckInputs = [ pytestCheckHook mock ]; - disabledTests = lib.optionals stdenv.isDarwin [ "test_application_name_db_uri" ]; + disabledTests = [ + # requires running postgres + "test_application_name_in_env" + ] ++ lib.optionals stdenv.isDarwin [ "test_application_name_db_uri" ]; meta = with lib; { description = "Command-line interface for PostgreSQL"; diff --git a/pkgs/development/python-modules/photutils/default.nix b/pkgs/development/python-modules/photutils/default.nix new file mode 100644 index 0000000000000..091e9cfd9741e --- /dev/null +++ b/pkgs/development/python-modules/photutils/default.nix @@ -0,0 +1,89 @@ +{ + lib, + astropy, + bottleneck, + buildPythonPackage, + cython, + extension-helpers, + fetchFromGitHub, + gwcs, + matplotlib, + numpy, + photutils, + pythonOlder, + rasterio, + scikit-image, + scikit-learn, + scipy, + setuptools-scm, + setuptools, + shapely, + tomli, + tqdm, + python, + wheel, +}: + +buildPythonPackage rec { + pname = "photutils"; + version = "1.12.0"; + pyproject = true; + + disabled = pythonOlder "3.10"; + + src = fetchFromGitHub { + owner = "astropy"; + repo = "photutils"; + rev = "refs/tags/${version}"; + hash = "sha256-k5MxpkCAvefSRoNPMAVIvNcCTU5HPicU4XSFXk13O9Q="; + }; + + postPatch = '' + substituteInPlace pyproject.toml \ + --replace-fail "'numpy>=2.0.0rc1'," "" + ''; + + build-system = [ + setuptools + setuptools-scm + wheel + ]; + + nativeBuildInputs = [ + cython + extension-helpers + numpy + ]; + + dependencies = [ + astropy + numpy + ]; + + passthru.optional-dependencies = { + all = [ + bottleneck + gwcs + matplotlib + rasterio + scikit-image + scikit-learn + scipy + shapely + tqdm + ]; + }; + + # With 1.12.0 tests have issues importing modules + doCheck = false; + + pythonImportsCheck = [ "photutils" ]; + + meta = with lib; { + description = "Astropy package for source detection and photometry"; + homepage = "https://github.com/astropy/photutils"; + changelog = "https://github.com/astropy/photutils/blob/${version}/CHANGES.rst"; + license = licenses.bsd3; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/pikepdf/default.nix b/pkgs/development/python-modules/pikepdf/default.nix index c327e2e6df345..5bd009c934387 100644 --- a/pkgs/development/python-modules/pikepdf/default.nix +++ b/pkgs/development/python-modules/pikepdf/default.nix @@ -87,10 +87,7 @@ buildPythonPackage rec { homepage = "https://github.com/pikepdf/pikepdf"; description = "Read and write PDFs with Python, powered by qpdf"; license = licenses.mpl20; - maintainers = with maintainers; [ - kiwi - dotlambda - ]; + maintainers = with maintainers; [ dotlambda ]; changelog = "https://github.com/pikepdf/pikepdf/blob/${src.rev}/docs/releasenotes/version${lib.versions.major version}.rst"; }; } diff --git a/pkgs/development/python-modules/plugwise/default.nix b/pkgs/development/python-modules/plugwise/default.nix index 75c281ae22b9f..e40bea699f8b4 100644 --- a/pkgs/development/python-modules/plugwise/default.nix +++ b/pkgs/development/python-modules/plugwise/default.nix @@ -22,7 +22,7 @@ buildPythonPackage rec { pname = "plugwise"; - version = "0.38.3"; + version = "0.37.4.1"; pyproject = true; disabled = pythonOlder "3.11"; @@ -31,7 +31,7 @@ buildPythonPackage rec { owner = "plugwise"; repo = "python-plugwise"; rev = "refs/tags/v${version}"; - hash = "sha256-DFHKycFWtR8moLyGaiDVqnrlg+ydgR8/UVgkUpzqAuY="; + hash = "sha256-4B/rnwrkeridIgMD8gUVYXYVbrmQhQqDOa8Ot1ae/Ls="; }; postPatch = '' diff --git a/pkgs/development/python-modules/proton-client/default.nix b/pkgs/development/python-modules/proton-client/default.nix index d61c5aed9bb6c..4e178ce26c929 100644 --- a/pkgs/development/python-modules/proton-client/default.nix +++ b/pkgs/development/python-modules/proton-client/default.nix @@ -57,7 +57,7 @@ buildPythonPackage rec { description = "Python Proton client module"; homepage = "https://github.com/ProtonMail/proton-python-client"; license = licenses.gpl3Only; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; platforms = platforms.linux; }; } diff --git a/pkgs/development/python-modules/proton-core/default.nix b/pkgs/development/python-modules/proton-core/default.nix index faedd9893190c..c19ef3b31d17a 100644 --- a/pkgs/development/python-modules/proton-core/default.nix +++ b/pkgs/development/python-modules/proton-core/default.nix @@ -68,6 +68,6 @@ buildPythonPackage rec { description = "Core logic used by the other Proton components"; homepage = "https://github.com/ProtonVPN/python-proton-core"; license = lib.licenses.gpl3Only; - maintainers = with lib.maintainers; [ wolfangaukang ]; + maintainers = [ ]; }; } diff --git a/pkgs/development/python-modules/proton-keyring-linux-secretservice/default.nix b/pkgs/development/python-modules/proton-keyring-linux-secretservice/default.nix index d7300a52e0799..ab9cefd53a993 100644 --- a/pkgs/development/python-modules/proton-keyring-linux-secretservice/default.nix +++ b/pkgs/development/python-modules/proton-keyring-linux-secretservice/default.nix @@ -36,6 +36,6 @@ buildPythonPackage rec { description = "ProtonVPN component to access Linux's keyring secret service API"; homepage = "https://github.com/ProtonVPN/python-proton-keyring-linux-secretservice"; license = licenses.gpl3Only; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; }; } diff --git a/pkgs/development/python-modules/proton-keyring-linux/default.nix b/pkgs/development/python-modules/proton-keyring-linux/default.nix index ebb8fc2923fdc..a0f63f4222da2 100644 --- a/pkgs/development/python-modules/proton-keyring-linux/default.nix +++ b/pkgs/development/python-modules/proton-keyring-linux/default.nix @@ -40,6 +40,6 @@ buildPythonPackage rec { description = "ProtonVPN core component to access Linux's keyring"; homepage = "https://github.com/ProtonVPN/python-proton-keyring-linux"; license = licenses.gpl3Only; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; }; } diff --git a/pkgs/development/python-modules/proton-vpn-api-core/default.nix b/pkgs/development/python-modules/proton-vpn-api-core/default.nix index 3af6e6eb62b5c..c3597acd9e5ce 100644 --- a/pkgs/development/python-modules/proton-vpn-api-core/default.nix +++ b/pkgs/development/python-modules/proton-vpn-api-core/default.nix @@ -55,6 +55,6 @@ buildPythonPackage rec { description = "Acts as a facade to the other Proton VPN components, exposing a uniform API to the available Proton VPN services"; homepage = "https://github.com/ProtonVPN/python-proton-vpn-api-core"; license = licenses.gpl3Only; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; }; } diff --git a/pkgs/development/python-modules/proton-vpn-connection/default.nix b/pkgs/development/python-modules/proton-vpn-connection/default.nix index b343ae1805414..0df1b42a2bc40 100644 --- a/pkgs/development/python-modules/proton-vpn-connection/default.nix +++ b/pkgs/development/python-modules/proton-vpn-connection/default.nix @@ -63,6 +63,6 @@ buildPythonPackage rec { description = "Defines the interface that VPN connection backends should implement"; homepage = "https://github.com/ProtonVPN/python-proton-vpn-connection"; license = licenses.gpl3Only; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; }; } diff --git a/pkgs/development/python-modules/proton-vpn-killswitch-network-manager/default.nix b/pkgs/development/python-modules/proton-vpn-killswitch-network-manager/default.nix index 2db8b53a3879a..68e024501cb65 100644 --- a/pkgs/development/python-modules/proton-vpn-killswitch-network-manager/default.nix +++ b/pkgs/development/python-modules/proton-vpn-killswitch-network-manager/default.nix @@ -52,6 +52,6 @@ buildPythonPackage rec { description = "Implementation of the proton-vpn-killswitch interface using Network Manager"; homepage = "https://github.com/ProtonVPN/python-proton-vpn-killswitch-network-manager"; license = licenses.gpl3Only; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; }; } diff --git a/pkgs/development/python-modules/proton-vpn-killswitch/default.nix b/pkgs/development/python-modules/proton-vpn-killswitch/default.nix index cc7fc839e5136..c2ed563df880e 100644 --- a/pkgs/development/python-modules/proton-vpn-killswitch/default.nix +++ b/pkgs/development/python-modules/proton-vpn-killswitch/default.nix @@ -36,6 +36,6 @@ buildPythonPackage rec { description = "Defines the ProtonVPN kill switch interface"; homepage = "https://github.com/ProtonVPN/python-proton-vpn-killswitch"; license = licenses.gpl3Only; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; }; } diff --git a/pkgs/development/python-modules/proton-vpn-logger/default.nix b/pkgs/development/python-modules/proton-vpn-logger/default.nix index a8c3f02de8fd2..d492ed146eb7e 100644 --- a/pkgs/development/python-modules/proton-vpn-logger/default.nix +++ b/pkgs/development/python-modules/proton-vpn-logger/default.nix @@ -41,6 +41,6 @@ buildPythonPackage rec { description = "General purpose logging package for the entire ProtonVPN Linux client"; homepage = "https://github.com/ProtonVPN/python-proton-vpn-logger"; license = licenses.gpl3Only; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; }; } diff --git a/pkgs/development/python-modules/proton-vpn-network-manager-openvpn/default.nix b/pkgs/development/python-modules/proton-vpn-network-manager-openvpn/default.nix index 2064cf0a6cca1..c10b489ed6b0d 100644 --- a/pkgs/development/python-modules/proton-vpn-network-manager-openvpn/default.nix +++ b/pkgs/development/python-modules/proton-vpn-network-manager-openvpn/default.nix @@ -45,6 +45,6 @@ buildPythonPackage rec { description = "Adds support for the OpenVPN protocol using NetworkManager"; homepage = "https://github.com/ProtonVPN/python-proton-vpn-network-manager-openvpn"; license = licenses.gpl3Only; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; }; } diff --git a/pkgs/development/python-modules/proton-vpn-network-manager/default.nix b/pkgs/development/python-modules/proton-vpn-network-manager/default.nix index b08545a739651..97dd1d52dca98 100644 --- a/pkgs/development/python-modules/proton-vpn-network-manager/default.nix +++ b/pkgs/development/python-modules/proton-vpn-network-manager/default.nix @@ -56,6 +56,6 @@ buildPythonPackage rec { description = "Provides the necessary functionality for other ProtonVPN components to interact with NetworkManager"; homepage = "https://github.com/ProtonVPN/python-proton-vpn-network-manager"; license = licenses.gpl3Only; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; }; } diff --git a/pkgs/development/python-modules/proton-vpn-session/default.nix b/pkgs/development/python-modules/proton-vpn-session/default.nix index b5d4756db600a..5210c42373111 100644 --- a/pkgs/development/python-modules/proton-vpn-session/default.nix +++ b/pkgs/development/python-modules/proton-vpn-session/default.nix @@ -61,6 +61,6 @@ buildPythonPackage rec { description = "Provides utility classes to manage VPN sessions"; homepage = "https://github.com/ProtonVPN/python-proton-vpn-session"; license = lib.licenses.gpl3Only; - maintainers = with lib.maintainers; [ wolfangaukang ]; + maintainers = [ ]; }; } diff --git a/pkgs/development/python-modules/protonvpn-nm-lib/default.nix b/pkgs/development/python-modules/protonvpn-nm-lib/default.nix index 4b4780afa4924..a5067b1525cf7 100644 --- a/pkgs/development/python-modules/protonvpn-nm-lib/default.nix +++ b/pkgs/development/python-modules/protonvpn-nm-lib/default.nix @@ -77,7 +77,7 @@ buildPythonPackage rec { mainProgram = "protonvpn_reconnector.py"; homepage = "https://github.com/ProtonVPN/protonvpn-nm-lib"; license = licenses.gpl3Only; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; platforms = platforms.linux; }; } diff --git a/pkgs/development/python-modules/pyatem/default.nix b/pkgs/development/python-modules/pyatem/default.nix index 72f392a3931ec..e9bf94be5dc1d 100644 --- a/pkgs/development/python-modules/pyatem/default.nix +++ b/pkgs/development/python-modules/pyatem/default.nix @@ -19,14 +19,14 @@ buildPythonPackage rec { pname = "pyatem"; - version = "0.10.0"; # check latest version in setup.py + version = "0.11.0"; # check latest version in setup.py pyproject = true; src = fetchFromSourcehut { owner = "~martijnbraam"; repo = "pyatem"; rev = version; - hash = "sha256-O+f1vVwfGJjLem25hsYE1Q1V4vzjrc0HxTBUCANCEwE="; + hash = "sha256-VBuOnUVB6n8ahVtunubgao9jHPu9ncX0dhDT0PdSFhU="; }; nativeBuildInputs = [ setuptools ]; diff --git a/pkgs/development/python-modules/pycrdt-websocket/default.nix b/pkgs/development/python-modules/pycrdt-websocket/default.nix index 3ad166d575155..4e727cc583162 100644 --- a/pkgs/development/python-modules/pycrdt-websocket/default.nix +++ b/pkgs/development/python-modules/pycrdt-websocket/default.nix @@ -19,7 +19,7 @@ buildPythonPackage rec { pname = "pycrdt-websocket"; - version = "0.13.4"; + version = "0.13.5"; pyproject = true; disabled = pythonOlder "3.8"; @@ -28,7 +28,7 @@ buildPythonPackage rec { owner = "jupyter-server"; repo = "pycrdt-websocket"; rev = "refs/tags/v${version}"; - hash = "sha256-nkm1ZQ6bYBRDDoREovhEthDZoHApYxzAnwVgDgpWW/s="; + hash = "sha256-dzlmgxrdQ97+DO/vDtoX7PIOpngEE+FGUGq1vdVmhNw="; }; build-system = [ hatchling ]; diff --git a/pkgs/development/python-modules/pydrawise/default.nix b/pkgs/development/python-modules/pydrawise/default.nix index b0e007460f9b8..1aad1ae6668ca 100644 --- a/pkgs/development/python-modules/pydrawise/default.nix +++ b/pkgs/development/python-modules/pydrawise/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { pname = "pydrawise"; - version = "2024.6.3"; + version = "2024.6.4"; pyproject = true; disabled = pythonOlder "3.10"; @@ -27,7 +27,7 @@ buildPythonPackage rec { owner = "dknowles2"; repo = "pydrawise"; rev = "refs/tags/${version}"; - hash = "sha256-y5+l9XSnKzrNrZQc+PklgjFtA32svzTPZz9PI1d8Pe4="; + hash = "sha256-I1VS9uNKybokbkKh6QVjsf5cLV3vg19EnblOheAyxn8="; }; build-system = [ diff --git a/pkgs/development/python-modules/pyhanko-certvalidator/default.nix b/pkgs/development/python-modules/pyhanko-certvalidator/default.nix index a774b8d59fb7d..d721bb46d2a67 100644 --- a/pkgs/development/python-modules/pyhanko-certvalidator/default.nix +++ b/pkgs/development/python-modules/pyhanko-certvalidator/default.nix @@ -78,6 +78,6 @@ buildPythonPackage rec { homepage = "https://github.com/MatthiasValvekens/certvalidator"; changelog = "https://github.com/MatthiasValvekens/certvalidator/blob/v${version}/changelog.md"; license = licenses.mit; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; }; } diff --git a/pkgs/development/python-modules/pyhanko/default.nix b/pkgs/development/python-modules/pyhanko/default.nix index ba9dd2fc3969f..8b18971d4af3a 100644 --- a/pkgs/development/python-modules/pyhanko/default.nix +++ b/pkgs/development/python-modules/pyhanko/default.nix @@ -132,6 +132,6 @@ buildPythonPackage rec { homepage = "https://github.com/MatthiasValvekens/pyHanko"; changelog = "https://github.com/MatthiasValvekens/pyHanko/blob/v${version}/docs/changelog.rst"; license = licenses.mit; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; }; } diff --git a/pkgs/development/python-modules/pymc/default.nix b/pkgs/development/python-modules/pymc/default.nix index 0a0075ecf9e53..7064d03607847 100644 --- a/pkgs/development/python-modules/pymc/default.nix +++ b/pkgs/development/python-modules/pymc/default.nix @@ -27,7 +27,7 @@ buildPythonPackage rec { owner = "pymc-devs"; repo = "pymc"; rev = "refs/tags/v${version}"; - hash = "sha256-wVz/sn9XbbYMAfClRBx6iK9+UKzy5e2oyH5ABGfNCIM="; + hash = "sha256-TAQv3BNSYt750JSZWQibjqzhQ0zXOJDVENMharjr6gQ="; }; postPatch = '' diff --git a/pkgs/development/python-modules/pymilter/default.nix b/pkgs/development/python-modules/pymilter/default.nix index d26e354d54b27..32b7cfcc9bbcd 100644 --- a/pkgs/development/python-modules/pymilter/default.nix +++ b/pkgs/development/python-modules/pymilter/default.nix @@ -31,9 +31,9 @@ buildPythonPackage rec { pydns ]; patches = [ - (fetchpatch { + (fetchpatch { # https://github.com/sdgathman/pymilter/pull/57 name = "Remove-calls-to-the-deprecated-method-assertEquals"; - url = "https://github.com/sdgathman/pymilter/pull/57.patch"; + url = "https://github.com/sdgathman/pymilter/commit/1ead9028fc63ae3ec6ea3b0c438e6ed088a2b20e.patch"; hash = "sha256-/5LlDR15nMR3l7rkVjT3w4FbDTFAAgNdERWlPNL2TVg="; }) ]; diff --git a/pkgs/development/python-modules/pynws/default.nix b/pkgs/development/python-modules/pynws/default.nix index c99595ee25707..a9e5e959e53d4 100644 --- a/pkgs/development/python-modules/pynws/default.nix +++ b/pkgs/development/python-modules/pynws/default.nix @@ -17,7 +17,7 @@ buildPythonPackage rec { pname = "pynws"; - version = "1.8.1"; + version = "1.8.2"; pyproject = true; disabled = pythonOlder "3.8"; @@ -26,7 +26,7 @@ buildPythonPackage rec { owner = "MatthewFlamm"; repo = "pynws"; rev = "refs/tags/v${version}"; - hash = "sha256-gC5IOW5sejXigBKfxLst8MwU/IkqSQrMZhmd4eza++s="; + hash = "sha256-3QKdZ7hg7HfQ56xHbkhXCtlBq4JCwfXdZiTctI3OVl0="; }; build-system = [ diff --git a/pkgs/development/python-modules/pyorthanc/default.nix b/pkgs/development/python-modules/pyorthanc/default.nix index 0c33fc2319744..a65d8d6b983bd 100644 --- a/pkgs/development/python-modules/pyorthanc/default.nix +++ b/pkgs/development/python-modules/pyorthanc/default.nix @@ -3,7 +3,6 @@ buildPythonPackage, fetchFromGitHub, pythonOlder, - pythonRelaxDepsHook, poetry-core, httpx, pydicom, @@ -11,30 +10,25 @@ buildPythonPackage rec { pname = "pyorthanc"; - version = "1.16.1"; + version = "1.18.0"; disabled = pythonOlder "3.8"; - format = "pyproject"; + pyproject = true; src = fetchFromGitHub { owner = "gacou54"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-6l3L0YUAqedyRjlQ6K3SaAMdGK2C0AeKpJj6MyXi4RA="; + hash = "sha256-ObZjTiEB4a7ForsugzKZDdIsTEWOX1zbv53ZJ4AllHE="; }; - nativeBuildInputs = [ - pythonRelaxDepsHook - poetry-core - ]; + build-system = [ poetry-core ]; - propagatedBuildInputs = [ + dependencies = [ httpx pydicom ]; - pythonRelaxDeps = [ "httpx" ]; - doCheck = false; # requires orthanc server (not in Nixpkgs) pythonImportsCheck = [ "pyorthanc" ]; diff --git a/pkgs/development/python-modules/pysigma-backend-elasticsearch/default.nix b/pkgs/development/python-modules/pysigma-backend-elasticsearch/default.nix index 4fea0395ef6f1..561f117c49f38 100644 --- a/pkgs/development/python-modules/pysigma-backend-elasticsearch/default.nix +++ b/pkgs/development/python-modules/pysigma-backend-elasticsearch/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "pysigma-backend-elasticsearch"; - version = "1.1.0"; + version = "1.1.1"; pyproject = true; disabled = pythonOlder "3.8"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "SigmaHQ"; repo = "pySigma-backend-elasticsearch"; rev = "refs/tags/v${version}"; - hash = "sha256-1tCn0aPYhjyOQJxN0cqTMDCcE0eZwRtTK6OV3rU1a1E="; + hash = "sha256-NrA7+iwjmYIOqLGRUJSWhOjFb6V542r0PWxuZG3O/Yo="; }; postPatch = '' diff --git a/pkgs/development/python-modules/pyswitchbot/default.nix b/pkgs/development/python-modules/pyswitchbot/default.nix index 44a1bbf9fd227..2a3ed39294165 100644 --- a/pkgs/development/python-modules/pyswitchbot/default.nix +++ b/pkgs/development/python-modules/pyswitchbot/default.nix @@ -15,7 +15,7 @@ buildPythonPackage rec { pname = "pyswitchbot"; - version = "0.47.2"; + version = "0.48.0"; pyproject = true; disabled = pythonOlder "3.8"; @@ -24,7 +24,7 @@ buildPythonPackage rec { owner = "Danielhiversen"; repo = "pySwitchbot"; rev = "refs/tags/${version}"; - hash = "sha256-89bFP/7ovsPj7htFGXrYR4jhm1E/ph47f4qZCKf1hfY="; + hash = "sha256-UVLB1SdtYiMsXR3od2gIxNxiQ6wyW2ItAJQrxv0w1tk="; }; build-system = [ setuptools ]; diff --git a/pkgs/development/python-modules/pytenable/default.nix b/pkgs/development/python-modules/pytenable/default.nix index 2fba1b0b779f9..88aa722c89b80 100644 --- a/pkgs/development/python-modules/pytenable/default.nix +++ b/pkgs/development/python-modules/pytenable/default.nix @@ -12,6 +12,7 @@ pythonOlder, requests, requests-pkcs12, + requests-toolbelt, responses, restfly, semver, @@ -21,7 +22,7 @@ buildPythonPackage rec { pname = "pytenable"; - version = "1.4.22"; + version = "1.5.0"; pyproject = true; disabled = pythonOlder "3.7"; @@ -30,7 +31,7 @@ buildPythonPackage rec { owner = "tenable"; repo = "pyTenable"; rev = "refs/tags/${version}"; - hash = "sha256-acMafLlO0yGEnW+0XeBWUpDWvOPFAB4RK/XyAb2JbPw="; + hash = "sha256-uLZ1TQx5awHOOF+IR3aWTwwYTd71O/V+EHaDrb1LAXU="; }; build-system = [ setuptools ]; @@ -41,6 +42,7 @@ buildPythonPackage rec { python-box python-dateutil requests + requests-toolbelt restfly semver typing-extensions diff --git a/pkgs/development/python-modules/pytest-helpers-namespace/default.nix b/pkgs/development/python-modules/pytest-helpers-namespace/default.nix index 45bf7c67c5caf..ced0389f2887d 100644 --- a/pkgs/development/python-modules/pytest-helpers-namespace/default.nix +++ b/pkgs/development/python-modules/pytest-helpers-namespace/default.nix @@ -34,6 +34,6 @@ buildPythonPackage rec { homepage = "https://github.com/saltstack/pytest-helpers-namespace"; description = "PyTest Helpers Namespace"; license = licenses.asl20; - maintainers = [ maintainers.kiwi ]; + maintainers = [ ]; }; } diff --git a/pkgs/development/python-modules/python-barcode/default.nix b/pkgs/development/python-modules/python-barcode/default.nix index 63d39dc9a8526..214e074ffd7a4 100644 --- a/pkgs/development/python-modules/python-barcode/default.nix +++ b/pkgs/development/python-modules/python-barcode/default.nix @@ -43,6 +43,6 @@ buildPythonPackage rec { homepage = "https://github.com/WhyNotHugo/python-barcode"; changelog = "https://github.com/WhyNotHugo/python-barcode/blob/v${version}/docs/changelog.rst"; license = licenses.mit; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; }; } diff --git a/pkgs/development/python-modules/python-digitalocean/default.nix b/pkgs/development/python-modules/python-digitalocean/default.nix index c0ab09542d952..4597db497fb90 100644 --- a/pkgs/development/python-modules/python-digitalocean/default.nix +++ b/pkgs/development/python-modules/python-digitalocean/default.nix @@ -50,9 +50,6 @@ buildPythonPackage rec { homepage = "https://github.com/koalalorenzo/python-digitalocean"; changelog = "https://github.com/koalalorenzo/python-digitalocean/releases/tag/v${version}"; license = with licenses; [ lgpl3Only ]; - maintainers = with maintainers; [ - kiwi - teh - ]; + maintainers = with maintainers; [ teh ]; }; } diff --git a/pkgs/development/python-modules/python-pae/default.nix b/pkgs/development/python-modules/python-pae/default.nix index d5595c14f03d2..731626689adf2 100644 --- a/pkgs/development/python-modules/python-pae/default.nix +++ b/pkgs/development/python-modules/python-pae/default.nix @@ -31,6 +31,6 @@ buildPythonPackage rec { description = "Pre-authentication encoding (PAE) implementation in Python"; homepage = "https://github.com/MatthiasValvekens/python-pae"; license = licenses.mit; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; }; } diff --git a/pkgs/development/python-modules/python-trovo/default.nix b/pkgs/development/python-modules/python-trovo/default.nix index f2af3cbb53d27..dace99e3b34e9 100644 --- a/pkgs/development/python-modules/python-trovo/default.nix +++ b/pkgs/development/python-modules/python-trovo/default.nix @@ -33,6 +33,6 @@ buildPythonPackage rec { description = "Python wrapper for the Trovo API"; homepage = "https://codeberg.org/wolfangaukang/python-trovo"; license = licenses.gpl3Only; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; }; } diff --git a/pkgs/development/python-modules/python-xmp-toolkit/default.nix b/pkgs/development/python-modules/python-xmp-toolkit/default.nix index e9541adb6a5d6..612194ae75360 100644 --- a/pkgs/development/python-modules/python-xmp-toolkit/default.nix +++ b/pkgs/development/python-modules/python-xmp-toolkit/default.nix @@ -46,6 +46,6 @@ buildPythonPackage { homepage = "https://github.com/python-xmp-toolkit/python-xmp-toolkit"; description = "Python XMP Toolkit for working with metadata"; license = licenses.bsd3; - maintainers = [ maintainers.kiwi ]; + maintainers = [ ]; }; } diff --git a/pkgs/development/python-modules/python-zbar/default.nix b/pkgs/development/python-modules/python-zbar/default.nix index bd8f4c01ff97c..ed676f9c3561d 100644 --- a/pkgs/development/python-modules/python-zbar/default.nix +++ b/pkgs/development/python-modules/python-zbar/default.nix @@ -54,6 +54,6 @@ buildPythonPackage rec { description = "Python bindings for zbar"; homepage = "https://github.com/mchehab/zbar"; license = licenses.lgpl21Only; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; }; } diff --git a/pkgs/development/python-modules/pyvex/default.nix b/pkgs/development/python-modules/pyvex/default.nix index 2c18ab2e56a1d..53ea4ed0c94f0 100644 --- a/pkgs/development/python-modules/pyvex/default.nix +++ b/pkgs/development/python-modules/pyvex/default.nix @@ -12,14 +12,14 @@ buildPythonPackage rec { pname = "pyvex"; - version = "9.2.106"; + version = "9.2.107"; pyproject = true; disabled = pythonOlder "3.11"; src = fetchPypi { inherit pname version; - hash = "sha256-rFdltQQOZN8qoG5m8Uvzi+zSD2vsq2Cb9Xpt2r5t678="; + hash = "sha256-e8DZgHCVUcAEgo9IR7Ut/v580//oeH9l1MwGSe/RThw="; }; build-system = [ setuptools ]; @@ -43,7 +43,7 @@ buildPythonPackage rec { preBuild = '' export CC=${stdenv.cc.targetPrefix}cc substituteInPlace pyvex_c/Makefile \ - --replace 'AR=ar' 'AR=${stdenv.cc.targetPrefix}ar' + --replace-fail 'AR=ar' 'AR=${stdenv.cc.targetPrefix}ar' ''; # No tests are available on PyPI, GitHub release has tests diff --git a/pkgs/development/python-modules/pyvista/default.nix b/pkgs/development/python-modules/pyvista/default.nix index 87bdf41a841c8..ee928182ccb45 100644 --- a/pkgs/development/python-modules/pyvista/default.nix +++ b/pkgs/development/python-modules/pyvista/default.nix @@ -15,7 +15,7 @@ buildPythonPackage rec { pname = "pyvista"; - version = "0.43.9"; + version = "0.43.10"; pyproject = true; disabled = pythonOlder "3.8"; @@ -24,7 +24,7 @@ buildPythonPackage rec { owner = pname; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-Trtf898ctSO3lyXC9aVy8Yrh4dCuNBvPiGKzG+D8m5o="; + hash = "sha256-WSxr6HA86zSbgwWn3KRIjcbNCe9SUjaOjBHywIdMbjw="; }; nativeBuildInputs = [ setuptools ]; diff --git a/pkgs/development/python-modules/quantile-forest/default.nix b/pkgs/development/python-modules/quantile-forest/default.nix index e38a6175c09d5..4cd74184b89f4 100644 --- a/pkgs/development/python-modules/quantile-forest/default.nix +++ b/pkgs/development/python-modules/quantile-forest/default.nix @@ -16,7 +16,7 @@ buildPythonPackage rec { pname = "quantile-forest"; - version = "1.3.6"; + version = "1.3.7"; pyproject = true; disabled = pythonOlder "3.8"; @@ -25,7 +25,7 @@ buildPythonPackage rec { owner = "zillow"; repo = "quantile-forest"; rev = "refs/tags/v${version}"; - hash = "sha256-cYi4idA6gcUd/aVMlIwlCB/jdKpxZtc6xQEhxNSY08Y="; + hash = "sha256-3EcluHUDtAYfaHycgyCAaolRcChecrPRnMaUFrpzMIQ="; }; build-system = [ diff --git a/pkgs/development/python-modules/rapidfuzz/default.nix b/pkgs/development/python-modules/rapidfuzz/default.nix index 0708cc6c3d64a..325c476000044 100644 --- a/pkgs/development/python-modules/rapidfuzz/default.nix +++ b/pkgs/development/python-modules/rapidfuzz/default.nix @@ -19,7 +19,7 @@ buildPythonPackage rec { pname = "rapidfuzz"; - version = "3.9.2"; + version = "3.9.3"; pyproject = true; disabled = pythonOlder "3.8"; @@ -28,7 +28,7 @@ buildPythonPackage rec { owner = "maxbachmann"; repo = "RapidFuzz"; rev = "refs/tags/v${version}"; - hash = "sha256-mPfS/p/Gwc/aobTZMJqbUkpEq60PC7DSiAXBanlNt+8="; + hash = "sha256-G1WveLVoeWkaKrHRFgCt8HVBnBYNdCb7/JVCm0L4dv8="; }; postPatch = '' diff --git a/pkgs/development/python-modules/ray/binary-hashes.nix b/pkgs/development/python-modules/ray/binary-hashes.nix index 45e06d9caff8d..cf243178e17b0 100644 --- a/pkgs/development/python-modules/ray/binary-hashes.nix +++ b/pkgs/development/python-modules/ray/binary-hashes.nix @@ -1,8 +1,8 @@ { cp310 = { - hash = "sha256-e0B3uGc5Yp4BC8bQAaiQCaouH+qUxAjA7jB2f8DA6m0="; + hash = "sha256-m8SBwbXXKU1ocvrBROAOoTlLfhMPtBJJ0WcNtJQVbYE="; }; cp311 = { - hash = "sha256-cZX0rjCgfyGqAM99lFZI7WlotjyksCpb3H/DCFP0lBA="; + hash = "sha256-4gO1dWWgCPKsn54ekpIW4NfXdvU0FEzMePZsEFI09wE="; }; } diff --git a/pkgs/development/python-modules/ray/default.nix b/pkgs/development/python-modules/ray/default.nix index f6c09b8afae00..f32bd388d5770 100644 --- a/pkgs/development/python-modules/ray/default.nix +++ b/pkgs/development/python-modules/ray/default.nix @@ -53,7 +53,7 @@ let pname = "ray"; - version = "2.24.0"; + version = "2.30.0"; in buildPythonPackage rec { inherit pname version; diff --git a/pkgs/development/python-modules/reconplogger/default.nix b/pkgs/development/python-modules/reconplogger/default.nix index 319730e8168f5..6b1800c7052bf 100644 --- a/pkgs/development/python-modules/reconplogger/default.nix +++ b/pkgs/development/python-modules/reconplogger/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "reconplogger"; - version = "4.16.0"; + version = "4.16.1"; pyproject = true; disabled = pythonOlder "3.8"; @@ -23,7 +23,7 @@ buildPythonPackage rec { owner = "omni-us"; repo = "reconplogger"; rev = "refs/tags/v${version}"; - hash = "sha256-jBWy5oHyZpRUWb8OW0dRFfpu3m3hTd5dpIOQCRO5swM="; + hash = "sha256-F/6vT3jLxpteUFtYNtGyiO/JxeRtwJKpdGXTFJ6IDCE="; }; build-system = [ setuptools ]; diff --git a/pkgs/development/python-modules/reptor/default.nix b/pkgs/development/python-modules/reptor/default.nix index a9051dc3eb5fb..626f674d7b9b1 100644 --- a/pkgs/development/python-modules/reptor/default.nix +++ b/pkgs/development/python-modules/reptor/default.nix @@ -33,7 +33,7 @@ buildPythonPackage rec { pname = "reptor"; - version = "0.19"; + version = "0.20"; pyproject = true; disabled = pythonOlder "3.8"; @@ -42,7 +42,7 @@ buildPythonPackage rec { owner = "Syslifters"; repo = "reptor"; rev = "refs/tags/${version}"; - hash = "sha256-7ZmMG1Fil8/JAks50baT/p1H7wHjap58+i81/DFlSAk="; + hash = "sha256-6DuIJScNiSaEez4vMRuA5Thr8zmvH0j3oiZmQhONSdY="; }; pythonRelaxDeps = true; diff --git a/pkgs/development/python-modules/requests-cache/default.nix b/pkgs/development/python-modules/requests-cache/default.nix index cf282e472eb43..3df15dd5ca4e1 100644 --- a/pkgs/development/python-modules/requests-cache/default.nix +++ b/pkgs/development/python-modules/requests-cache/default.nix @@ -32,7 +32,7 @@ buildPythonPackage rec { pname = "requests-cache"; - version = "1.2.0"; + version = "1.2.1"; pyproject = true; disabled = pythonOlder "3.8"; @@ -41,7 +41,7 @@ buildPythonPackage rec { owner = "requests-cache"; repo = "requests-cache"; rev = "refs/tags/v${version}"; - hash = "sha256-w1ptKi/MH3kGZxLMUNq/Gs6btGx+n2fG4nfQUXCXmiY="; + hash = 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--- a/pkgs/development/python-modules/rioxarray/default.nix +++ b/pkgs/development/python-modules/rioxarray/default.nix @@ -1,18 +1,21 @@ { lib, buildPythonPackage, - fetchFromGitHub, - pytestCheckHook, pythonOlder, - - dask, - netcdf4, + fetchFromGitHub, + # build-system + setuptools, + # dependencies numpy, packaging, pyproj, rasterio, - setuptools, xarray, + # tests + dask, + netcdf4, + pytestCheckHook, + stdenv, }: buildPythonPackage rec { @@ -24,13 +27,13 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "corteva"; repo = "rioxarray"; - rev = version; + rev = "refs/tags/${version}"; hash = "sha256-bumFZQktgUqo2lyoLtDXkh6Vv5oS/wobqYpvNYy7La0="; }; build-system = [ setuptools ]; - propagatedBuildInputs = [ + dependencies = [ numpy packaging pyproj @@ -44,13 +47,20 @@ buildPythonPackage rec { pytestCheckHook ]; - disabledTests = [ "test_clip_geojson__no_drop" ]; + disabledTests = + [ "test_clip_geojson__no_drop" ] + ++ lib.optionals (stdenv.hostPlatform.system == "aarch64-linux") [ + # numerical errors + "test_clip_geojson" + "test_open_rasterio_mask_chunk_clip" + ]; pythonImportsCheck = [ "rioxarray" ]; meta = { description = "geospatial xarray extension powered by rasterio"; homepage = "https://corteva.github.io/rioxarray/"; + changelog = "https://github.com/corteva/rioxarray/releases/tag/${version}"; license = lib.licenses.asl20; maintainers = lib.teams.geospatial.members; }; diff --git a/pkgs/development/python-modules/rpy2/default.nix b/pkgs/development/python-modules/rpy2/default.nix index ba1c265afe423..1fd58cb565fe1 100644 --- a/pkgs/development/python-modules/rpy2/default.nix +++ b/pkgs/development/python-modules/rpy2/default.nix @@ -5,6 +5,7 @@ fetchPypi, isPyPy, R, + libdeflate, rWrapper, rPackages, pcre, @@ -53,6 +54,7 @@ buildPythonPackage rec { bzip2 zlib icu + libdeflate ] ++ (with rPackages; [ # packages expected by the test framework @@ -87,6 +89,13 @@ buildPythonPackage rec { doCheck = !stdenv.isDarwin; + # 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= "windows_x86_64_msvc" +version = "0.48.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "ed94fce61571a4006852b7389a063ab983c02eb1bb37b47f8272ce92d06d9538" + +[[package]] +name = "windows_x86_64_msvc" +version = "0.52.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "bec47e5bfd1bff0eeaf6d8b485cc1074891a197ab4225d504cb7a1ab88b02bf0" + +[[package]] +name = "winnow" +version = "0.6.7" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "14b9415ee827af173ebb3f15f9083df5a122eb93572ec28741fb153356ea2578" +dependencies = [ + "memchr", +] + +[[package]] +name = "winsafe" +version = "0.0.19" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "d135d17ab770252ad95e9a872d365cf3090e3be864a34ab46f48555993efc904" + +[[package]] +name = "yansi-term" +version = "0.1.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "fe5c30ade05e61656247b2e334a031dfd0cc466fadef865bdcdea8d537951bf1" +dependencies = [ + "winapi", +] diff --git a/pkgs/development/python-modules/ruff-api/default.nix b/pkgs/development/python-modules/ruff-api/default.nix new file mode 100644 index 0000000000000..43170c4312145 --- /dev/null +++ b/pkgs/development/python-modules/ruff-api/default.nix @@ -0,0 +1,60 @@ +{ + lib, + stdenv, + buildPythonPackage, + cargo, + darwin, + fetchFromGitHub, + pythonOlder, + rustc, + rustPlatform, + ufmt, + usort, +}: + +buildPythonPackage rec { + pname = "ruff-api"; + version = "0.0.6"; + pyproject = true; + + disabled = pythonOlder "3.8"; + + src = fetchFromGitHub { + owner = "amyreese"; + repo = "ruff-api"; + rev = "refs/tags/v${version}"; + hash = "sha256-nZKf0LpCoYwWoLDGoorJ+zQSLyuxfWu3LOygocVlYSs="; + }; + + cargoDeps = rustPlatform.importCargoLock { + lockFile = ./Cargo.lock; + outputHashes = { + "ruff-0.3.7" = "sha256-PS4YJpVut+KtEgSlTVtoVdlu6FVipPIzsl01/Io5N64="; + }; + }; + + nativeBuildInputs = [ + cargo + rustPlatform.cargoSetupHook + rustPlatform.maturinBuildHook + rustc + ]; + + buildInputs = lib.optionals stdenv.isDarwin [ + darwin.apple_sdk.frameworks.CoreFoundation + darwin.apple_sdk.frameworks.CoreServices + ]; + + # Tests have issues at the moment, check with next update + doCheck = false; + + pythonImportsCheck = [ "ruff_api" ]; + + meta = with lib; { + description = "Experimental Python API for Ruff"; + homepage = "https://github.com/amyreese/ruff-api"; + changelog = "https://github.com/amyreese/ruff-api/blob/${version}/CHANGELOG.md"; + license = licenses.mit; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/ruffus/default.nix b/pkgs/development/python-modules/ruffus/default.nix index 37ff8340634a7..44a1b8939795e 100644 --- a/pkgs/development/python-modules/ruffus/default.nix +++ b/pkgs/development/python-modules/ruffus/default.nix @@ -44,6 +44,6 @@ buildPythonPackage rec { description = "Light-weight Python Computational Pipeline Management"; homepage = "http://www.ruffus.org.uk"; license = licenses.mit; - maintainers = [ maintainers.kiwi ]; + maintainers = [ ]; }; } diff --git a/pkgs/development/python-modules/sacrebleu/default.nix b/pkgs/development/python-modules/sacrebleu/default.nix index 10a6b0876b942..50a3a5d998b7f 100644 --- a/pkgs/development/python-modules/sacrebleu/default.nix +++ b/pkgs/development/python-modules/sacrebleu/default.nix @@ -16,7 +16,7 @@ }: let pname = "sacrebleu"; - version = "2.3.1"; + version = "2.4.2"; in buildPythonPackage { inherit pname version; @@ -25,8 +25,8 @@ buildPythonPackage { src = fetchFromGitHub { owner = "mjpost"; repo = pname; - rev = "v${version}"; - hash = "sha256-+58dhQv5LkjccjktfoAG2gqja6TMLIxHIbRgzZPDhKo="; + rev = "refs/tags/v${version}"; + hash = "sha256-evSBHvDFOJlE2f9uM+NNCQeABY5lCc3Rs9dq11n7v5c="; }; # postPatch = '' diff --git a/pkgs/development/python-modules/single-version/default.nix b/pkgs/development/python-modules/single-version/default.nix index e08878e89f581..869ef6a38309f 100644 --- a/pkgs/development/python-modules/single-version/default.nix +++ b/pkgs/development/python-modules/single-version/default.nix @@ -28,6 +28,6 @@ buildPythonPackage rec { description = "Utility to let you have a single source of version in your code base"; homepage = "https://github.com/hongquan/single-version"; license = licenses.mit; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; }; } diff --git a/pkgs/development/python-modules/survey/default.nix b/pkgs/development/python-modules/survey/default.nix index 6c787abb71d17..f0ff72b8b7857 100644 --- a/pkgs/development/python-modules/survey/default.nix +++ b/pkgs/development/python-modules/survey/default.nix @@ -9,14 +9,14 @@ buildPythonPackage rec { pname = "survey"; - version = "5.3.1"; + version = "5.4.0"; pyproject = true; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-uNx8Ij28Li9QQjq/S6OP5kft2K8pDu2NyBK6BP/xcw8="; + hash = "sha256-JT0tcNBReNdfbZrwSgv0OFcBz9Hp1N5JF4nP9oXfTJs="; }; build-system = [ diff --git a/pkgs/development/python-modules/tencentcloud-sdk-python/default.nix b/pkgs/development/python-modules/tencentcloud-sdk-python/default.nix index 2ba8856349ac2..2fd63f5e1d929 100644 --- a/pkgs/development/python-modules/tencentcloud-sdk-python/default.nix +++ b/pkgs/development/python-modules/tencentcloud-sdk-python/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "tencentcloud-sdk-python"; - version = "3.0.1171"; + version = "3.0.1173"; pyproject = true; disabled = pythonOlder "3.9"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "TencentCloud"; repo = "tencentcloud-sdk-python"; rev = "refs/tags/${version}"; - hash = "sha256-8ZjC4gfTVLuH8b90xzURHhowFS/vdXBjWP64ZoiM7/E="; + hash = "sha256-rCfTgK6ZfddBofxOfA1ilRwUGRkYTj4NpDEFRfpjSEk="; }; build-system = [ setuptools ]; diff --git a/pkgs/development/python-modules/testcontainers/default.nix b/pkgs/development/python-modules/testcontainers/default.nix index 362a4f36b94ed..dd59406a7dfd0 100644 --- a/pkgs/development/python-modules/testcontainers/default.nix +++ b/pkgs/development/python-modules/testcontainers/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "testcontainers"; - version = "4.5.1"; + version = "4.6.0"; pyproject = true; disabled = pythonOlder "3.9"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "testcontainers"; repo = "testcontainers-python"; rev = "refs/tags/testcontainers-v${version}"; - hash = "sha256-7QlT3ibSUDeC+aWi2MCagLkomXG3/VU1xHQ7Xgoh/Pw="; + hash = "sha256-jTTpeIWZD61UZkQWW5q/c0vgViT76qjDXw4qXfNqDnA="; }; postPatch = '' diff --git a/pkgs/development/python-modules/timm/default.nix b/pkgs/development/python-modules/timm/default.nix index be58f447dba4d..a02c90152435a 100644 --- a/pkgs/development/python-modules/timm/default.nix +++ b/pkgs/development/python-modules/timm/default.nix @@ -5,6 +5,7 @@ fetchFromGitHub, pdm-backend, huggingface-hub, + numpy, pyyaml, safetensors, torch, @@ -16,22 +17,23 @@ buildPythonPackage rec { pname = "timm"; - version = "1.0.3"; + version = "1.0.7"; pyproject = true; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "huggingface"; repo = "pytorch-image-models"; rev = "refs/tags/v${version}"; - hash = "sha256-h2J1v2zXUMGRKBBqq+RnxrXKOzlD5RRrVoODWSuj9Ms="; + hash = "sha256-0o88gOZvHXblGPwyRIz2D3sD7wdg0J0knrAFlognEOY="; }; build-system = [ pdm-backend ]; dependencies = [ huggingface-hub + numpy pyyaml safetensors torch diff --git a/pkgs/development/python-modules/tskit/default.nix b/pkgs/development/python-modules/tskit/default.nix index 82f8e6b6a5f81..0299fea08e5aa 100644 --- a/pkgs/development/python-modules/tskit/default.nix +++ b/pkgs/development/python-modules/tskit/default.nix @@ -2,7 +2,7 @@ lib, buildPythonPackage, fetchPypi, - setuptools-scm, + setuptools, pythonOlder, numpy, jsonschema, @@ -11,20 +11,21 @@ buildPythonPackage rec { pname = "tskit"; - version = "0.5.6"; - format = "pyproject"; + version = "0.5.7"; + pyproject = true; + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-3f4hPxywY822mCF3IwooBezX38fM1zAm4Th4q//SzkY="; + hash = "sha256-yD+2W1tzzi+5wFoZrqNe+jJLpWyx6ZILBgKivDE+wiM="; }; - nativeBuildInputs = [ setuptools-scm ]; + build-system = [ setuptools ]; - propagatedBuildInputs = [ - numpy + dependencies = [ jsonschema + numpy svgwrite ]; @@ -34,11 +35,11 @@ buildPythonPackage rec { pythonImportsCheck = [ "tskit" ]; - meta = with lib; { + meta = { description = "Tree sequence toolkit"; mainProgram = "tskit"; homepage = "https://github.com/tskit-dev/tskit"; - license = licenses.mit; - maintainers = with maintainers; [ alxsimon ]; + license = lib.licenses.mit; + maintainers = with lib.maintainers; [ alxsimon ]; }; } diff --git a/pkgs/development/python-modules/twilio/default.nix b/pkgs/development/python-modules/twilio/default.nix index 204637733d55e..c5e6a7c61607f 100644 --- a/pkgs/development/python-modules/twilio/default.nix +++ b/pkgs/development/python-modules/twilio/default.nix @@ -20,7 +20,7 @@ buildPythonPackage rec { pname = "twilio"; - version = "9.2.0"; + version = "9.2.1"; pyproject = true; disabled = pythonOlder "3.7"; @@ -29,7 +29,7 @@ buildPythonPackage rec { owner = "twilio"; repo = "twilio-python"; rev = "refs/tags/${version}"; - hash = "sha256-vENcbkWXSdhHv3QYjhu8j2UmzmEFHaSD0xDb2pbxqMM="; + hash = "sha256-lCa9dV8rYyGRff+uOKIT0eq5PRItGRuedgY7IrRZ714="; }; build-system = [ setuptools ]; diff --git a/pkgs/development/python-modules/twitchapi/default.nix b/pkgs/development/python-modules/twitchapi/default.nix index 743f4892b07e6..6ceb6b5313664 100644 --- a/pkgs/development/python-modules/twitchapi/default.nix +++ b/pkgs/development/python-modules/twitchapi/default.nix @@ -50,7 +50,6 @@ buildPythonPackage rec { license = licenses.mit; maintainers = with maintainers; [ dotlambda - wolfangaukang ]; }; } diff --git a/pkgs/development/python-modules/txzmq/default.nix b/pkgs/development/python-modules/txzmq/default.nix index d49c52f274624..6c521d2f69f32 100644 --- a/pkgs/development/python-modules/txzmq/default.nix +++ b/pkgs/development/python-modules/txzmq/default.nix @@ -31,6 +31,6 @@ buildPythonPackage rec { description = "Twisted bindings for ZeroMQ"; homepage = "https://github.com/smira/txZMQ"; license = licenses.mpl20; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; }; } diff --git a/pkgs/development/python-modules/ufmt/default.nix b/pkgs/development/python-modules/ufmt/default.nix index 374bc53481750..e494d280ed726 100644 --- a/pkgs/development/python-modules/ufmt/default.nix +++ b/pkgs/development/python-modules/ufmt/default.nix @@ -7,9 +7,11 @@ flit-core, libcst, moreorless, + pygls, pythonOlder, tomlkit, trailrunner, + ruff-api, typing-extensions, unittestCheckHook, usort, @@ -17,21 +19,21 @@ buildPythonPackage rec { pname = "ufmt"; - version = "2.1.0"; - format = "pyproject"; + version = "2.7.0"; + pyproject = true; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3."; src = fetchFromGitHub { owner = "omnilib"; repo = "ufmt"; rev = "refs/tags/v${version}"; - hash = "sha256-eQIbSC0Oxi6JD7/3o2y9f+KhT8GIiFiYiV4A3QBoWl0="; + hash = "sha256-hIbzW7yDqk8siob+RhcnbOonkl+67sl/IGHimIeMM+Q="; }; - nativeBuildInputs = [ flit-core ]; + build-system = [ flit-core ]; - propagatedBuildInputs = [ + dependencies = [ black click libcst @@ -42,16 +44,23 @@ buildPythonPackage rec { usort ]; - nativeCheckInputs = [ unittestCheckHook ]; + passthru.optional-dependencies = { + lsp = [ pygls ]; + ruff = [ ruff-api ]; + }; + + nativeCheckInputs = [ + unittestCheckHook + ] ++ lib.flatten (builtins.attrValues passthru.optional-dependencies); pythonImportsCheck = [ "ufmt" ]; meta = with lib; { description = "Safe, atomic formatting with black and usort"; - mainProgram = "ufmt"; homepage = "https://github.com/omnilib/ufmt"; changelog = "https://github.com/omnilib/ufmt/blob/${version}/CHANGELOG.md"; license = licenses.mit; maintainers = with maintainers; [ fab ]; + mainProgram = "ufmt"; }; } diff --git a/pkgs/development/python-modules/unstructured/default.nix b/pkgs/development/python-modules/unstructured/default.nix index 38bfa9ac72087..5cc743b9e3213 100644 --- a/pkgs/development/python-modules/unstructured/default.nix +++ b/pkgs/development/python-modules/unstructured/default.nix @@ -57,7 +57,7 @@ grpcio, }: let - version = "0.14.5"; + version = "0.14.7"; optional-dependencies = { huggingflace = [ langdetect @@ -100,7 +100,7 @@ buildPythonPackage { owner = "Unstructured-IO"; repo = "unstructured"; rev = "refs/tags/${version}"; - hash = "sha256-LkzSFIQX9WaffUkQ7JWhK6cZfc7DngLYYOxe1Jl5+gA="; + hash = "sha256-V4LUo3di25IJ09KOPwcrOfgPxxgdRbFJHiBkWYnmxYc="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/vcard/default.nix b/pkgs/development/python-modules/vcard/default.nix index df882ae250caf..41fecf60da031 100644 --- a/pkgs/development/python-modules/vcard/default.nix +++ b/pkgs/development/python-modules/vcard/default.nix @@ -2,14 +2,19 @@ buildPythonPackage, fetchFromGitLab, lib, + nix-update-script, pytestCheckHook, python-dateutil, pythonAtLeast, pythonOlder, }: -buildPythonPackage rec { - pname = "vcard"; +let version = "0.15.4"; +in +buildPythonPackage { + inherit version; + + pname = "vcard"; format = "setuptools"; disabled = pythonOlder "3.8" || pythonAtLeast "3.12"; @@ -27,6 +32,8 @@ buildPythonPackage rec { pythonImportsCheck = [ "vcard" ]; + passthru.updateScript = nix-update-script { }; + meta = { homepage = "https://gitlab.com/engmark/vcard"; description = "vCard validator, class and utility functions"; diff --git a/pkgs/development/python-modules/virt-firmware/default.nix b/pkgs/development/python-modules/virt-firmware/default.nix index 960a2327586a7..19c6244f26264 100644 --- a/pkgs/development/python-modules/virt-firmware/default.nix +++ b/pkgs/development/python-modules/virt-firmware/default.nix @@ -45,7 +45,6 @@ buildPythonPackage rec { homepage = "https://gitlab.com/kraxel/virt-firmware"; license = licenses.gpl2; maintainers = with maintainers; [ - lheckemann raitobezarius ]; }; diff --git a/pkgs/development/python-modules/weatherflow4py/default.nix b/pkgs/development/python-modules/weatherflow4py/default.nix index d3dd7c8fd6fb8..df85ba7d48c5e 100644 --- a/pkgs/development/python-modules/weatherflow4py/default.nix +++ b/pkgs/development/python-modules/weatherflow4py/default.nix @@ -15,7 +15,7 @@ buildPythonPackage rec { pname = "weatherflow4py"; - version = "0.2.20"; + version = "0.2.21"; pyproject = true; disabled = pythonOlder "3.11"; @@ -24,7 +24,7 @@ buildPythonPackage rec { owner = "jeeftor"; repo = "weatherflow4py"; rev = "refs/tags/v${version}"; - hash = "sha256-kkNGhFhciOfhrbjxLM01YC2IRmkdKEbk4EUyDJZJuxU="; + hash = "sha256-ah/PpYusrr1nxvKiSpUBYfkn4crX9pCNV9mjpDndMQE="; }; build-system = [ poetry-core ]; diff --git a/pkgs/development/python-modules/xiaomi-ble/default.nix b/pkgs/development/python-modules/xiaomi-ble/default.nix index 02f6bc25c86a1..e081f49cae91e 100644 --- a/pkgs/development/python-modules/xiaomi-ble/default.nix +++ b/pkgs/development/python-modules/xiaomi-ble/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { pname = "xiaomi-ble"; - version = "0.29.0"; + version = "0.30.0"; pyproject = true; disabled = pythonOlder "3.9"; @@ -27,7 +27,7 @@ buildPythonPackage rec { owner = "Bluetooth-Devices"; repo = "xiaomi-ble"; rev = "refs/tags/v${version}"; - hash = "sha256-+zMjnLUzI8ctucvxXts7V4lN4Gp0ZQtArhpXUCBvhF0="; + hash = "sha256-pWTWzw1ZdXnxPERkJUHumBboSIVo0t5HqQFRXC90CpU="; }; postPatch = '' diff --git a/pkgs/development/python-modules/yalexs/default.nix b/pkgs/development/python-modules/yalexs/default.nix index f3ee1d05772da..39fefd923956b 100644 --- a/pkgs/development/python-modules/yalexs/default.nix +++ b/pkgs/development/python-modules/yalexs/default.nix @@ -20,7 +20,7 @@ buildPythonPackage rec { pname = "yalexs"; - version = "6.0.0"; + version = "6.4.0"; pyproject = true; disabled = pythonOlder "3.9"; @@ -29,7 +29,7 @@ buildPythonPackage rec { owner = "bdraco"; repo = "yalexs"; rev = "refs/tags/v${version}"; - hash = "sha256-xBBO0cXdOzt2ioMQzzdtSKB0WxOZBIb4PsiKoRrUUSc="; + hash = "sha256-b5R80l3+5mnxMFtISUxToufhSDoRmmCRAyoP5hbk08o="; }; postPatch = '' diff --git a/pkgs/development/python-modules/zha/default.nix b/pkgs/development/python-modules/zha/default.nix index f8ba88bdf0c64..87d5d230d7a0c 100644 --- a/pkgs/development/python-modules/zha/default.nix +++ b/pkgs/development/python-modules/zha/default.nix @@ -27,7 +27,7 @@ buildPythonPackage rec { pname = "zha"; - version = "0.0.9"; + version = "0.0.15"; pyproject = true; disabled = pythonOlder "3.12"; @@ -36,7 +36,7 @@ buildPythonPackage rec { owner = "zigpy"; repo = "zha"; rev = "refs/tags/${version}"; - hash = "sha256-wQY355KUsN91y3lgj9k3ceeHb6a0faxiguIFK4ZwPIE="; + hash = "sha256-k4Wqxv7WJGDDGXA80qW+RUICTUcgLsWJNiV+zsOkfuM="; }; postPatch = '' diff --git a/pkgs/development/r-modules/bioc-annotation-packages.nix b/pkgs/development/r-modules/bioc-annotation-packages.nix index a681c47f12988..1c0c301df7445 100644 --- a/pkgs/development/r-modules/bioc-annotation-packages.nix +++ b/pkgs/development/r-modules/bioc-annotation-packages.nix @@ -4,14 +4,14 @@ # Rscript generate-r-packages.R bioc-annotation >new && mv new bioc-annotation-packages.nix { self, derive }: -let derive2 = derive { biocVersion = "3.18"; }; +let derive2 = derive { biocVersion = "3.19"; }; in with self; { AHCytoBands = derive2 { name="AHCytoBands"; version="0.99.1"; sha256="0svxxhj3mh5gqik45ikcxnlhnma8n1c0rv8pycj2034cb9ms1dbv"; depends=[]; }; - AHEnsDbs = derive2 { name="AHEnsDbs"; version="1.1.11"; sha256="1mh8aji48a6fad6bd1333qmc3dw7b5hf4v7xw0zhmfbnld64gz0s"; depends=[AnnotationHubData ensembldb]; }; - AHLRBaseDbs = derive2 { name="AHLRBaseDbs"; version="1.7.0"; sha256="1nbgqv1c3nyhlniqvqdc5cf8kyys323z1ia5jw54hxwi1jdyclfg"; depends=[AnnotationHub]; }; - AHMeSHDbs = derive2 { name="AHMeSHDbs"; version="1.7.0"; sha256="0hxik2xzvbgv6a936mvax5kyv65drr36r9rf7rlv124jinlbxw82"; depends=[AnnotationHub]; }; + AHEnsDbs = derive2 { name="AHEnsDbs"; version="1.5.1"; sha256="02gvrlfld6y03gcw7931fplm220dhnhh12xljb0xm6f3inl0vwa6"; depends=[AnnotationHubData ensembldb]; }; + AHLRBaseDbs = derive2 { name="AHLRBaseDbs"; version="1.8.0"; sha256="038i0338zyqzkvmhxcdiykb0rwa3bzi0vv18j643b1a64bsnvcxi"; depends=[AnnotationHub]; }; + AHMeSHDbs = derive2 { name="AHMeSHDbs"; version="1.8.0"; sha256="09acd6xipzillw9z68nqqxjxa0hbshclv504na7l2dkhpppx6934"; depends=[AnnotationHub]; }; AHPathbankDbs = derive2 { name="AHPathbankDbs"; version="0.99.5"; sha256="10wcrglm521xcrfbzc39dkbjvg1pkz0zq70vgnh68akiwmdirp89"; depends=[AnnotationHub]; }; - AHPubMedDbs = derive2 { name="AHPubMedDbs"; version="1.7.0"; sha256="0a14xjhh95pwnyy4c1vij6p63pmgry8fffx4zbirczzzrxsc9cvp"; depends=[AnnotationHub]; }; + AHPubMedDbs = derive2 { name="AHPubMedDbs"; version="1.8.0"; sha256="1p9jxs8ci4yv7yi4n86gpg49jigdmw0nrfnm8ls0jxwm0371vm7l"; depends=[AnnotationHub]; }; AHWikipathwaysDbs = derive2 { name="AHWikipathwaysDbs"; version="0.99.4"; sha256="0vz3p9sx36bwzl9rq0ffh7klbq13pv2yhgjq1cjk7ll8z226c0q4"; depends=[AnnotationHub]; }; AlphaMissense_v2023_hg19 = derive2 { name="AlphaMissense.v2023.hg19"; version="3.18.2"; sha256="0622yzywf3655rsh1ckmfvx0crm715a227bg5zz5znz7zfnlsl8y"; depends=[AnnotationHub GenomicScores]; }; AlphaMissense_v2023_hg38 = derive2 { name="AlphaMissense.v2023.hg38"; version="3.18.2"; sha256="080c0282hcls96pd9mjljv2y1y6sy6nhqzlqwl5a2knq1aql4mna"; depends=[AnnotationHub GenomicScores]; }; @@ -133,6 +133,7 @@ in with self; { ChemmineDrugs = derive2 { name="ChemmineDrugs"; version="1.0.2"; sha256="0l47ac6lkycmghra2cbcdcxcv47ari8xg6lxpzilvkf4n6ld6064"; depends=[BiocGenerics ChemmineR RSQLite]; }; DO_db = derive2 { name="DO.db"; version="2.9"; sha256="10bqqa124l61ivzy4mdd3z3ar9a6537qbxw23pc4y9w8a6dwnavn"; depends=[AnnotationDbi]; }; ENCODExplorerData = derive2 { name="ENCODExplorerData"; version="0.99.5"; sha256="00gfm5l8pxrfs4cw4jlw6n0cz5s31isg69k833n89800v26w3kvh"; depends=[data_table jsonlite RCurl]; }; + EPICv2manifest = derive2 { name="EPICv2manifest"; version="0.99.7"; sha256="1rskd8zhdxvvf119ngsmr6bzrmabhy5zqdh1w5azcyf4c39svp6k"; depends=[AnnotationHub]; }; EnsDb_Hsapiens_v75 = derive2 { name="EnsDb.Hsapiens.v75"; version="2.99.0"; sha256="0jx6rf6v0j8yr07q3c1h7s121901dc400nm6xaiv4i7kb5czjn9c"; depends=[ensembldb]; }; EnsDb_Hsapiens_v79 = derive2 { name="EnsDb.Hsapiens.v79"; version="2.99.0"; sha256="0k94iml0417m3k086d0bzd83fndyb2kn7pimsfzcdmafgy6sxwgg"; depends=[ensembldb]; }; EnsDb_Hsapiens_v86 = derive2 { name="EnsDb.Hsapiens.v86"; version="2.99.0"; sha256="1gp7xrzddpvmh2vrcp571wyy00skxgxfl39ksj4h0hm1qay0fb2m"; depends=[ensembldb]; }; @@ -151,9 +152,9 @@ in with self; { FDb_UCSC_snp137common_hg19 = derive2 { name="FDb.UCSC.snp137common.hg19"; version="1.0.0"; sha256="1q1r7rk29q0zlzxz6fvfy1kjfli6wxzvhvhhfnf3z4ksy5332q63"; depends=[AnnotationDbi GenomicFeatures]; }; FDb_UCSC_tRNAs = derive2 { name="FDb.UCSC.tRNAs"; version="1.0.1"; sha256="1dymdalx9fzrplxyc0fd9faa4r5jimi7zyry9k65lyz1pabpkwqz"; depends=[AnnotationDbi GenomicFeatures]; }; GGHumanMethCancerPanelv1_db = derive2 { name="GGHumanMethCancerPanelv1.db"; version="1.4.1"; sha256="0ag1pkbh4mx4aplfrrz1q4f4cl05mczq9pcsfkd1071qk51dcwvx"; depends=[AnnotationDbi AnnotationForge org_Hs_eg_db]; }; - GO_db = derive2 { name="GO.db"; version="3.18.0"; sha256="0znqa724jvrw2xx696n48lx83kzhivfr7fc9awzgm7nigwg3907m"; depends=[AnnotationDbi]; }; + GO_db = derive2 { name="GO.db"; version="3.19.1"; sha256="199vk4y069yik7fn25pp73nkhs1vaw9km9rcmm1cirncwm2n0vhg"; depends=[AnnotationDbi]; }; GeneSummary = derive2 { name="GeneSummary"; version="0.99.6"; sha256="0h6afrjb00afrcw6mwslxp7cmwfzp4qfxh0aa4f41kfjd3cymmp5"; depends=[]; }; - GenomeInfoDbData = derive2 { name="GenomeInfoDbData"; version="1.2.11"; sha256="1hkvcrp4a2g3yl1h4k5zzj5fhp3d9a1amyn19zr62q9fhj3y47ri"; depends=[]; }; + GenomeInfoDbData = derive2 { name="GenomeInfoDbData"; version="1.2.12"; sha256="0md3jl5bz4d2wkvf4yra7rydf5dgykrijrdqwwxc7f77l30nsmgp"; depends=[]; }; GenomicState = derive2 { name="GenomicState"; version="0.99.15"; sha256="1r7z3n6wyrd2cclj5b7sg15wpmjdh9k5b1hjlw7jjx8j384l7l1h"; depends=[AnnotationDbi AnnotationHub bumphunter derfinder GenomeInfoDb GenomicFeatures IRanges org_Hs_eg_db rtracklayer]; }; HDO_db = derive2 { name="HDO.db"; version="0.99.1"; sha256="14ngyxailmxrbxqqi9m7mchqcvchmbg7zm34i8a927b20s6z4z61"; depends=[AnnotationDbi]; }; HPO_db = derive2 { name="HPO.db"; version="0.99.2"; sha256="1brzrnafvyh76h8a663gk5lprhixxpi9xi65vwgxwf7jh6yw0was"; depends=[AnnotationDbi AnnotationHub BiocFileCache DBI]; }; @@ -175,9 +176,11 @@ in with self; { IlluminaHumanMethylationEPICanno_ilm10b3_hg19 = derive2 { name="IlluminaHumanMethylationEPICanno.ilm10b3.hg19"; version="0.6.0"; sha256="1rdkvbpbz8a8bd9ipycfmgn8a3x519abhwywka21ii9ziv3s6ah6"; depends=[minfi]; }; IlluminaHumanMethylationEPICanno_ilm10b4_hg19 = derive2 { name="IlluminaHumanMethylationEPICanno.ilm10b4.hg19"; version="0.6.0"; sha256="0687b4k8hwfc18qgdd9ypv1skp37jd204fszba0gmrv3dc92i09c"; depends=[minfi]; }; IlluminaHumanMethylationEPICmanifest = derive2 { name="IlluminaHumanMethylationEPICmanifest"; version="0.3.0"; sha256="0alhjda5g186z8b1nsmnpfswrlj7prdz8mkwx60wkkl6hkcnk6p3"; depends=[minfi]; }; + IlluminaHumanMethylationEPICv2anno_20a1_hg38 = derive2 { name="IlluminaHumanMethylationEPICv2anno.20a1.hg38"; version="1.0.0"; sha256="0vp4m3a7qal4d8qc9xaj7z3x484i33ix4c67qlbw0kskdir7rq5a"; depends=[minfi]; }; + IlluminaHumanMethylationEPICv2manifest = derive2 { name="IlluminaHumanMethylationEPICv2manifest"; version="1.0.0"; sha256="1z4b15x8cai27cqhl2lhl02nx0lv8q5c1774vdvvdajx2hivn77l"; depends=[minfi]; }; JASPAR2018 = derive2 { name="JASPAR2018"; version="1.1.1"; sha256="1iq5b51ryah2ccdx16yyigfa2jiapcpm94l6vgvd4v7b94jjp8l7"; depends=[]; }; JASPAR2020 = derive2 { name="JASPAR2020"; version="0.99.10"; sha256="0nrp63z7q2ivv5h87f7inpp2qll2dfgj4227l4rbnzii38a2vfdr"; depends=[]; }; - JASPAR2022 = derive2 { name="JASPAR2022"; version="0.99.7"; sha256="0sayaxsazcsbwdkisjfmkc01piahkqi9xks3rfj60cf56wrjlbpa"; depends=[BiocFileCache]; }; + JASPAR2022 = derive2 { name="JASPAR2022"; version="0.99.8"; sha256="0di84aydk5brgdz1qh30fh1jizwd8w1rsz74mw4apv5s8ayryl48"; depends=[BiocFileCache]; }; JASPAR2024 = derive2 { name="JASPAR2024"; version="0.99.6"; sha256="1l169kwymylqz67fz182fgq22nvg3cg12p2r8drgibs2d72khcpf"; depends=[BiocFileCache]; }; JazaeriMetaData_db = derive2 { name="JazaeriMetaData.db"; version="3.2.3"; sha256="04lvcmm4ybxkfwgbiwcnpyj6kpbd0gd7jz6ijlbbvv6zdgdmvykb"; depends=[AnnotationDbi org_Hs_eg_db]; }; LAPOINTE_db = derive2 { name="LAPOINTE.db"; version="3.2.3"; sha256="0960gy5p4ybs5zs6251cgc3nk5a9gsh1nh23gkbkr3gc8jddinfm"; depends=[AnnotationDbi org_Hs_eg_db]; }; @@ -198,7 +201,8 @@ in with self; { MafDb_gnomAD_r2_1_hs37d5 = derive2 { name="MafDb.gnomAD.r2.1.hs37d5"; version="3.10.0"; sha256="153dy3lx0islfdkmyik7lxp1w2yzb0bqmia673hlwi4rmvns112h"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; MafDb_gnomADex_r2_1_GRCh38 = derive2 { name="MafDb.gnomADex.r2.1.GRCh38"; version="3.10.0"; sha256="1v0sdjmn9z8gqn4yj4v04zycj3ngr32r04zqmkp6y41hcgdr8lxw"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; MafDb_gnomADex_r2_1_hs37d5 = derive2 { name="MafDb.gnomADex.r2.1.hs37d5"; version="3.10.0"; sha256="0y42ncmilijdxsgqsmskz7gff3il3fdf2kpflknmz1z9kybzaday"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - MafH5_gnomAD_v3_1_2_GRCh38 = derive2 { name="MafH5.gnomAD.v3.1.2.GRCh38"; version="3.15.0"; sha256="18hzw7f41ii16qpm3ch516b773900l1m1id5z6a763m01fg0mhiq"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores HDF5Array IRanges rhdf5 S4Vectors]; }; + MafH5_gnomAD_v3_1_2_GRCh38 = derive2 { name="MafH5.gnomAD.v3.1.2.GRCh38"; version="3.15.1"; sha256="1q9hlva814sjfz8vm9bzw7xzppbcfy5qq7nnz9w742yr59cjb6mp"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores HDF5Array IRanges rhdf5 S4Vectors]; }; + MafH5_gnomAD_v4_0_GRCh38 = derive2 { name="MafH5.gnomAD.v4.0.GRCh38"; version="3.19.0"; sha256="1hb905rvxvzh2nap52agcm488yarn2j99d23yxa133jw9d8a9zqk"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores HDF5Array IRanges rhdf5 S4Vectors]; }; MmAgilentDesign026655_db = derive2 { name="MmAgilentDesign026655.db"; version="3.2.3"; sha256="00d0yjcb5id7zacx4bzdwy4q6f4qvnnx8ph4d4xz1fmcbspz2qiz"; depends=[AnnotationDbi org_Mm_eg_db]; }; MoExExonProbesetLocation = derive2 { name="MoExExonProbesetLocation"; version="1.15.0"; sha256="0bvj3bji4bwwmxjz4b57n1aqypdibdmry30rfwmlxss1hav96sl7"; depends=[AnnotationDbi]; }; Mu15v1_db = derive2 { name="Mu15v1.db"; version="3.2.3"; sha256="0qchqkbx6ybijab8qhflxj33kwksfll1d3d3917vydjac9fzw1lz"; depends=[AnnotationDbi org_Mm_eg_db]; }; @@ -206,9 +210,9 @@ in with self; { Mus_musculus = derive2 { name="Mus.musculus"; version="1.3.1"; sha256="143zdf83gbfqhy8jm9df7gzhw5q3a64jrjrxrzjf0zd76j8s8j6y"; depends=[AnnotationDbi GenomicFeatures GO_db org_Mm_eg_db OrganismDbi TxDb_Mmusculus_UCSC_mm10_knownGene]; }; Norway981_db = derive2 { name="Norway981.db"; version="3.2.3"; sha256="04ngc2hilqi9m7933mnm7jcvkxlz68vqqh5b628db575vcxql9b9"; depends=[AnnotationDbi org_Hs_eg_db]; }; OperonHumanV3_db = derive2 { name="OperonHumanV3.db"; version="3.2.3"; sha256="082gff88cwk2p50q8g9bixggacaclgqcvk6w5dc11h9fkgvd160i"; depends=[AnnotationDbi org_Hs_eg_db]; }; - Orthology_eg_db = derive2 { name="Orthology.eg.db"; version="3.18.0"; sha256="11v6fm2403m32q9k70n5p839a4awks7avcfaa8rvrm59v0ab5czj"; depends=[AnnotationDbi]; }; + Orthology_eg_db = derive2 { name="Orthology.eg.db"; version="3.19.1"; sha256="1zg50j46kka5y0mfgqw3vh5xibd3yk7ay051dnci6mgd7v9gns5w"; depends=[AnnotationDbi]; }; PANTHER_db = derive2 { name="PANTHER.db"; version="1.0.12"; sha256="05ydg87cix86hp6hkkqmcniy69q5zyb3xyc3q7bykp26bvrgjvqq"; depends=[AnnotationDbi AnnotationHub BiocFileCache RSQLite]; }; - PFAM_db = derive2 { name="PFAM.db"; version="3.18.0"; sha256="15m7qfvz53jkdmx90y7rvy62myr4y3hdy414yqi0w3ch32vy78nr"; depends=[AnnotationDbi]; }; + PFAM_db = derive2 { name="PFAM.db"; version="3.19.1"; sha256="0jjba22p8x4cfnihsa3gah3amdr4yrqpfm0zfr990jcjkvf94wvk"; depends=[AnnotationDbi]; }; POCRCannotation_db = derive2 { name="POCRCannotation.db"; version="3.2.3"; sha256="0ybvs4hrxpivdkhm0fxpib11vlxqqdk8prlyj78vj5qzyb3iy89d"; depends=[AnnotationDbi org_Hs_eg_db]; }; PartheenMetaData_db = derive2 { name="PartheenMetaData.db"; version="3.2.3"; sha256="0d37c5b7s3fgkkvg7sj7gl9ksrjk5pyyv54vkys8w3qwgsm8yrdz"; depends=[AnnotationDbi org_Hs_eg_db]; }; PolyPhen_Hsapiens_dbSNP131 = derive2 { name="PolyPhen.Hsapiens.dbSNP131"; version="1.0.2"; sha256="1kikygkli41sn3rqihz0924prmqg2264ifj29vmg1a7qccm0kf7c"; depends=[AnnotationDbi RSQLite VariantAnnotation]; }; @@ -227,7 +231,7 @@ in with self; { SNPlocs_Hsapiens_dbSNP150_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP150.GRCh38"; version="0.99.20"; sha256="0jkwwgxxpm9ry8kizq8hs70sky41pks1ag40y5aqq91yjbpqlckj"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; SNPlocs_Hsapiens_dbSNP155_GRCh37 = derive2 { name="SNPlocs.Hsapiens.dbSNP155.GRCh37"; version="0.99.24"; sha256="0am2r8hn5ybxlvlw7c0i91n5xii0km3iy7d9a0wc9v1ykvk6qmgz"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; SNPlocs_Hsapiens_dbSNP155_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP155.GRCh38"; version="0.99.24"; sha256="1yzywcyk1yngjys9pyykilzw0w4nfxdmwz04w3b17chsbxvckl5s"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - SomaScan_db = derive2 { name="SomaScan.db"; version="0.99.7"; sha256="012v0ph9mkdl13111qamzkdfpdklbq94ry6scjhbhjqm4igmz79r"; depends=[AnnotationDbi DBI org_Hs_eg_db]; }; + SomaScan_db = derive2 { name="SomaScan.db"; version="0.99.10"; sha256="1qk4frv4hn3pfwbhqd92r8d59ksvgzs9399w4ca7knmij6zzl73p"; depends=[AnnotationDbi DBI org_Hs_eg_db]; }; TxDb_Athaliana_BioMart_plantsmart22 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart22"; version="3.0.1"; sha256="0j2zr4cddad7z1lxx9m9kfgyy7jajjnblpk9j8igd39ia3ixrpzc"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Athaliana_BioMart_plantsmart25 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart25"; version="3.1.3"; sha256="0a6v0l6p13zmiysi3k8dxzdlxng552qqj9rnlbdavdiidla0pvm3"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Athaliana_BioMart_plantsmart28 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart28"; version="3.2.2"; sha256="1yjyvrbx55y024lqg3b2rlf8pngqw5xi3p83j5ipan05wf0aq6ir"; depends=[AnnotationDbi GenomicFeatures]; }; @@ -253,14 +257,14 @@ in with self; { TxDb_Hsapiens_UCSC_hg19_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg19.knownGene"; version="3.2.2"; sha256="1sajhcqqwazgz2lqbik7rd935i7kpnh08zxbp2ra10j72yqy4g86"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Hsapiens_UCSC_hg19_lincRNAsTranscripts = derive2 { name="TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts"; version="3.2.2"; sha256="0bmbp7kydvviczw8axgxq2wdlwq6fdas90jk9bg56avjq5syws2g"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Hsapiens_UCSC_hg38_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.knownGene"; version="3.18.0"; sha256="0ak6acjll2djamakpn60ks47lfs2y0r8xwhjazj6fvch34xkc2d5"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Hsapiens_UCSC_hg38_refGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.refGene"; version="3.18.0"; sha256="03wfafd03gni9wpavfwjzfjhx6z8hv4f4jnh4hkjbxqld32sg1kr"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Hsapiens_UCSC_hg38_refGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.refGene"; version="3.19.0"; sha256="1ylqdh23767x20npbx0527r353h4kdhc2cz6s2xdadjm3ia8zynn"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmulatta_UCSC_rheMac10_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac10.refGene"; version="3.14.0"; sha256="12gxs6s57l22013g40b7hb09vxhmdri73cp9rgs2icb88p7sjlib"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmulatta_UCSC_rheMac3_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac3.refGene"; version="3.12.0"; sha256="1a0wbh4dajpgynmw2iwbvp836nklzlk0cfhqnwmqq9l4gzzh2w07"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmulatta_UCSC_rheMac8_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac8.refGene"; version="3.12.0"; sha256="1k7mq3p96wfd0694zw00hs4529zvv8nnfdwlsb94bn11qjhr1zrz"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmusculus_UCSC_mm10_ensGene = derive2 { name="TxDb.Mmusculus.UCSC.mm10.ensGene"; version="3.4.0"; sha256="0saxi1fdiwd38sfvy1rynd3v44rbp158jv6sjqcivvaqnd84zg9s"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmusculus_UCSC_mm10_knownGene = derive2 { name="TxDb.Mmusculus.UCSC.mm10.knownGene"; version="3.10.0"; sha256="0xs9npnhbwll7p62hibs02y4ac23jchdcr25i6a7qwq1kms82qk9"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmusculus_UCSC_mm39_knownGene = derive2 { name="TxDb.Mmusculus.UCSC.mm39.knownGene"; version="3.18.0"; sha256="061rfyddq15sz684jchvwxww1ipi94xljcgwbz4a92k8i9cnysva"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Mmusculus_UCSC_mm39_refGene = derive2 { name="TxDb.Mmusculus.UCSC.mm39.refGene"; version="3.18.0"; sha256="0f7392c9zd5489jfsdxvwwmpnzscp70ayxv78gcg50m5mkgwaydv"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Mmusculus_UCSC_mm39_refGene = derive2 { name="TxDb.Mmusculus.UCSC.mm39.refGene"; version="3.19.0"; sha256="1rhfr4s0lxz86vigrbyyx27q1gbg0g512ld0rkfv2vxwdbcl9hc0"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmusculus_UCSC_mm9_knownGene = derive2 { name="TxDb.Mmusculus.UCSC.mm9.knownGene"; version="3.2.2"; sha256="16bjxy00363hf91ik2mqlqls86i07gia72qh92xc3l1ncch61mx2"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Ptroglodytes_UCSC_panTro4_refGene = derive2 { name="TxDb.Ptroglodytes.UCSC.panTro4.refGene"; version="3.12.0"; sha256="036g5zn9rzy8qivb1snhpancsz1z60i3r7z3g91bgla4jpgwwjv6"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Ptroglodytes_UCSC_panTro5_refGene = derive2 { name="TxDb.Ptroglodytes.UCSC.panTro5.refGene"; version="3.12.0"; sha256="0yypv9iqn4i36hnvcr2lsfgaabl8g2pm72ya4psvia261jr2i12i"; depends=[AnnotationDbi GenomicFeatures]; }; @@ -285,15 +289,16 @@ in with self; { agprobe = derive2 { name="agprobe"; version="2.18.0"; sha256="1vnawamcpz16na8nmlq2czfxcr325fwdnngxl65mmnbd0f4lmy3k"; depends=[AnnotationDbi]; }; alternativeSplicingEvents_hg19 = derive2 { name="alternativeSplicingEvents.hg19"; version="1.1.0"; sha256="0q90nw3ds66zbyn3ch19lq1qimd1hz1s3jyyd6zi3v10p5s8bm0y"; depends=[AnnotationHub]; }; alternativeSplicingEvents_hg38 = derive2 { name="alternativeSplicingEvents.hg38"; version="1.1.0"; sha256="18qabggvs9mcg8fwd6prdca8lfxn9r9i0493l667n8jl9vy2pbfc"; depends=[AnnotationHub]; }; - anopheles_db0 = derive2 { name="anopheles.db0"; version="3.18.0"; sha256="197p9dc3rn8vri3frmsrq9r033g2dd0dvbdabgcm8ailyphwpmqq"; depends=[AnnotationDbi]; }; - arabidopsis_db0 = derive2 { name="arabidopsis.db0"; version="3.18.0"; sha256="1dv2vrzq6anf422jxa9vssvwc68m1x3cp9543liq3ajprz1alh35"; depends=[AnnotationDbi]; }; + anopheles_db0 = derive2 { name="anopheles.db0"; version="3.19.1"; sha256="190yjnl86b6vm2xmdfm43hn5xy7jsf83rwd103v537y4qhxdy0yq"; depends=[AnnotationDbi]; }; + arabidopsis_db0 = derive2 { name="arabidopsis.db0"; version="3.19.1"; sha256="1fi4akbk7yc6drkdwp0dfaxdn5axg1c5qp9b445318zszdylxbd3"; depends=[AnnotationDbi]; }; ath1121501_db = derive2 { name="ath1121501.db"; version="3.13.0"; sha256="0v4vapbns71dpv09857lyrnliq202i8yi4ar9z81wbpbc22lhf0d"; depends=[AnnotationDbi org_At_tair_db]; }; ath1121501cdf = derive2 { name="ath1121501cdf"; version="2.18.0"; sha256="1naq8f8dwgbmndx178nm2pw6hjx5ljx0w1wb4dfjifnl4bs5rqcc"; depends=[AnnotationDbi]; }; + ath1121501frmavecs = derive2 { name="ath1121501frmavecs"; version="1.0.0"; sha256="0y3ka95aafiyily188536azvfqrsr2mbljhc696d2wlkjczbxq5i"; depends=[]; }; ath1121501probe = derive2 { name="ath1121501probe"; version="2.18.0"; sha256="0a2nd8zhp3ybis780l3rrmwcxskbl3a111g8w6m8qfwsw5vnlqg1"; depends=[AnnotationDbi]; }; barley1cdf = derive2 { name="barley1cdf"; version="2.18.0"; sha256="0rbij5cqr2sz33y5waybv85nrcgf70iwj5gk13g0xn9p1l1zxyn2"; depends=[AnnotationDbi]; }; barley1probe = derive2 { name="barley1probe"; version="2.18.0"; sha256="1kh5r748b4vkmvlfaclmrh07ypbrzgxn90liqfz1rwkabh6rfk71"; depends=[AnnotationDbi]; }; bovine_db = derive2 { name="bovine.db"; version="3.13.0"; sha256="06692b1n0lzhg0biixipsnwx33w9y8wkc7pc5q1lkjfzbmd2inml"; depends=[AnnotationDbi org_Bt_eg_db]; }; - bovine_db0 = derive2 { name="bovine.db0"; version="3.18.0"; sha256="1s95x4hrv6r1mlsls2yfwbw1mn0jpqg7ancfcwc22p9pi962jjf8"; depends=[AnnotationDbi]; }; + bovine_db0 = derive2 { name="bovine.db0"; version="3.19.1"; sha256="1qyhzbr81r302xnzg76njwj3b88rrbk02qsxsrg7728qwpwd412v"; depends=[AnnotationDbi]; }; bovinecdf = derive2 { name="bovinecdf"; version="2.18.0"; sha256="13mf0yy0dypkm5n2ghl04xm6ayb9bn9qijqhgynksghi7s2k34mb"; depends=[AnnotationDbi]; }; bovineprobe = derive2 { name="bovineprobe"; version="2.18.0"; sha256="0i4afa5dksnir2nfrfh2cynjm59sm6vfaqa9wyag8cxg7c2nlm1i"; depends=[AnnotationDbi]; }; bsubtiliscdf = derive2 { name="bsubtiliscdf"; version="2.18.0"; sha256="1rihrjim37b49rhqr4nxga8sp67qri9xqlqc141mhbngh6cw3iyl"; depends=[AnnotationDbi]; }; @@ -302,7 +307,7 @@ in with self; { cadd_v1_6_hg19 = derive2 { name="cadd.v1.6.hg19"; version="3.18.1"; sha256="1g8pk1bmq2p6a7r1skfs54a2b8106znasympyz3dq3vahm5ia0dq"; depends=[AnnotationHub GenomicScores]; }; cadd_v1_6_hg38 = derive2 { name="cadd.v1.6.hg38"; version="3.18.1"; sha256="0088wv3a082ircmgpx23822bvjwqd5jdvilkgvhaypksbnbdkq68"; depends=[AnnotationHub GenomicScores]; }; canine_db = derive2 { name="canine.db"; version="3.13.0"; sha256="1x1mlh0p6r2l5kclarqwgiw9y64xc8jhp6252hhpl9bpnn638n3s"; depends=[AnnotationDbi org_Cf_eg_db]; }; - canine_db0 = derive2 { name="canine.db0"; version="3.18.0"; sha256="1s88nj0ysvb7dwvxwkshy9w1a8qvaq3bkxki974zhhh42ssdxm2q"; depends=[AnnotationDbi]; }; + canine_db0 = derive2 { name="canine.db0"; version="3.19.1"; sha256="0qagfxza04zncjrd97b0mrqrd5jchifv1pxbzv3npdp0801yym2f"; depends=[AnnotationDbi]; }; canine2_db = derive2 { name="canine2.db"; version="3.13.0"; sha256="1xzz0vivdypwl6kaq2ba02jkpxw0r9r98297ilksdh8m71f244si"; depends=[AnnotationDbi org_Cf_eg_db]; }; canine2cdf = derive2 { name="canine2cdf"; version="2.18.0"; sha256="077cmmnhjdk0vxjzm1kqf3q5kgx6chwkm59dr4s5dy019rqb6sqr"; depends=[AnnotationDbi]; }; canine2probe = derive2 { name="canine2probe"; version="2.18.0"; sha256="1l849a1dqy4kpcsxs0lvb48ag81i0f0ys0w4757rw4kp8ry59z4b"; depends=[AnnotationDbi]; }; @@ -312,10 +317,10 @@ in with self; { celeganscdf = derive2 { name="celeganscdf"; version="2.18.0"; sha256="0a6w0a48azg0i21j3aqb7fnxck3ff9w3gsi89bnlfh0zx6pknx7p"; depends=[AnnotationDbi]; }; celegansprobe = derive2 { name="celegansprobe"; version="2.18.0"; sha256="05k7si3f8pzkyb8jv0r2vkavbrqxsn4nawl92gcphfsylrwcddqb"; depends=[AnnotationDbi]; }; chicken_db = derive2 { name="chicken.db"; version="3.13.0"; sha256="0szb7sgassw10kzm8iz8h3fdbxm6v0kz95yb3a9icj2chi5d1m2i"; depends=[AnnotationDbi org_Gg_eg_db]; }; - chicken_db0 = derive2 { name="chicken.db0"; version="3.18.0"; sha256="1b2ypbjxmm6dg5dagc9cka9p1c9n6b9rjlw1ivcakbnpx7ipwkl2"; depends=[AnnotationDbi]; }; + chicken_db0 = derive2 { name="chicken.db0"; version="3.19.1"; sha256="1qba9s4fmh17b3g6z6jfb2cdby0mhc80xjj0r9a2wvd8qlm5gyw1"; depends=[AnnotationDbi]; }; chickencdf = derive2 { name="chickencdf"; version="2.18.0"; sha256="09hhim5s9xj7n2b5rhn1svf5qly2mn0rr2v2ls25hfzyrqcbxlz1"; depends=[AnnotationDbi]; }; chickenprobe = derive2 { name="chickenprobe"; version="2.18.0"; sha256="1fdsiwfyg7fwslrr7xs3gny7sw24bzg5k1fvlyzb1477sgj0pid3"; depends=[AnnotationDbi]; }; - chimp_db0 = derive2 { name="chimp.db0"; version="3.18.0"; sha256="1y5yi53hld1q3zi3z25zg68mb76nbh09yikn4x14q5rk2imjg9gm"; depends=[AnnotationDbi]; }; + chimp_db0 = derive2 { name="chimp.db0"; version="3.19.1"; sha256="1vsb2235k00jxmff9i7lbc3kmiqkz5xvm21bzhryql7kgy5i64yf"; depends=[AnnotationDbi]; }; chromhmmData = derive2 { name="chromhmmData"; version="0.99.2"; sha256="13g6x7lzmkz9qv7yr6ps8gsgilgr048lc7y0y7xsfa9ws3n08fzj"; depends=[]; }; citruscdf = derive2 { name="citruscdf"; version="2.18.0"; sha256="1326mj1xf3k4v5iyyn46whx24qfng0x3cv6rvckdr1ycc1v887dn"; depends=[AnnotationDbi]; }; citrusprobe = derive2 { name="citrusprobe"; version="2.18.0"; sha256="0bf1wic136cxwgs4j13wsyqasnyvr0jw1hzg6qizndmy7g8hrb87"; depends=[AnnotationDbi]; }; @@ -339,15 +344,15 @@ in with self; { ecoli2_db = derive2 { name="ecoli2.db"; version="3.13.0"; sha256="1i2arr26hch7lmx2bixzy4l0zaa0gynah4dfwa98cvb24ahqqj9f"; depends=[AnnotationDbi org_EcK12_eg_db]; }; ecoli2cdf = derive2 { name="ecoli2cdf"; version="2.18.0"; sha256="1rkxrwadq9kg9685z9pg6rgc4bblkx5p3c6snsl4gv2k188dva9r"; depends=[AnnotationDbi]; }; ecoli2probe = derive2 { name="ecoli2probe"; version="2.18.0"; sha256="11q4ka0ncjapahic49xdl9919vm9frrwlqgj101krgkg262lfm8n"; depends=[AnnotationDbi]; }; - ecoliK12_db0 = derive2 { name="ecoliK12.db0"; version="3.18.0"; sha256="1x0jpi1j5nxvzirrjafg9w71glsshdbw98zrw1zzbp7gxrwxilpn"; depends=[AnnotationDbi]; }; - ecoliSakai_db0 = derive2 { name="ecoliSakai.db0"; version="3.18.0"; sha256="0khajmjawf0gs7bi0m4pnzl1m7p76wdybv9h3fd3p1qjv5dyifwz"; depends=[AnnotationDbi]; }; + ecoliK12_db0 = derive2 { name="ecoliK12.db0"; version="3.19.1"; sha256="0fi0cxl5hj5mx2z2r0j86qf3bfx1dz8abn86maim9b1l89whvqwd"; depends=[AnnotationDbi]; }; + ecoliSakai_db0 = derive2 { name="ecoliSakai.db0"; version="3.19.1"; sha256="1kqpmmddqyfjx2y2kbp53mv1vazbjhpwl3crpx2iq0q1b2ynb63f"; depends=[AnnotationDbi]; }; ecoliasv2cdf = derive2 { name="ecoliasv2cdf"; version="2.18.0"; sha256="16i6has9qgmzakcy24racc1h9j331wndv5c87qp5r1zrai61zyav"; depends=[AnnotationDbi]; }; ecoliasv2probe = derive2 { name="ecoliasv2probe"; version="2.18.0"; sha256="1hfrnal170cdigc2fmnynb75jjsiq77p4x6ws9gah558hvx87nk3"; depends=[AnnotationDbi]; }; ecolicdf = derive2 { name="ecolicdf"; version="2.18.0"; sha256="18g5prjykn356k35m131ifn128k5mhij2x26balqav0azigzjqsn"; depends=[AnnotationDbi]; }; ecoliprobe = derive2 { name="ecoliprobe"; version="2.18.0"; sha256="17g5zxfzsak7a0w51irc0w1w2i5ngdkx9db6rhv1fyp8mfjgaphd"; depends=[AnnotationDbi]; }; excluderanges = derive2 { name="excluderanges"; version="0.99.8"; sha256="19pdwlhqlz420yss371bsqhkx8c7wxr0sv4wsycnc0mlplwq4bsf"; depends=[GenomicRanges]; }; fitCons_UCSC_hg19 = derive2 { name="fitCons.UCSC.hg19"; version="3.7.1"; sha256="19isa4x8js0pdb4k8a11bw3bzmzv6jc4jphzrvav7piqkvrgykzx"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - fly_db0 = derive2 { name="fly.db0"; version="3.18.0"; sha256="1pksr9jwdd5izf2yc7fb935pic84nvlxa458h0da9lryglc0w5rg"; depends=[AnnotationDbi]; }; + fly_db0 = derive2 { name="fly.db0"; version="3.19.1"; sha256="0726vpqc092mq9j23ghvy5yjg3v6fm26fynlad5k4wshyfw1szxk"; depends=[AnnotationDbi]; }; geneplast_data = derive2 { name="geneplast.data"; version="0.99.9"; sha256="1i31kx4kckfg965s9l3pilvmg847av3rpa05aql43259ccyng4hi"; depends=[ape BiocFileCache dplyr geneplast igraph purrr readr tibble tidyr treeio]; }; geneplast_data_string_v91 = derive2 { name="geneplast.data.string.v91"; version="0.99.6"; sha256="0mc26d0sgmpmfmqsqinqv5k6vhg0hlc8hsjkcnvf369yav224nq1"; depends=[]; }; genomewidesnp5Crlmm = derive2 { name="genomewidesnp5Crlmm"; version="1.0.6"; sha256="06dmwnjy3gb53y6nr02dmp22qzfl5d63wppazrabcqbzwimhnvp8"; depends=[]; }; @@ -480,7 +485,7 @@ in with self; { hugene20sttranscriptcluster_db = derive2 { name="hugene20sttranscriptcluster.db"; version="8.8.0"; sha256="00fjhz7gac0rssn3kplag68vfx7gimjrm4mc7z516bs013rppgsz"; depends=[AnnotationDbi org_Hs_eg_db]; }; hugene21stprobeset_db = derive2 { name="hugene21stprobeset.db"; version="8.8.0"; sha256="0s4zl9lv5w3fkb9axhz9siliz73brwarw8a7cam1p9b2kmdrdqs0"; depends=[AnnotationDbi org_Hs_eg_db]; }; hugene21sttranscriptcluster_db = derive2 { name="hugene21sttranscriptcluster.db"; version="8.8.0"; sha256="1g7yfva96vhkdvcvsjwsj7sy8q6kczd5rmcwrwjc73v9qi4ywgal"; depends=[AnnotationDbi org_Hs_eg_db]; }; - human_db0 = derive2 { name="human.db0"; version="3.18.0"; sha256="0il4v5r03976qvfd4gq8wdgrp060c1byc3v6wx6yxcxk1wvp81zf"; depends=[AnnotationDbi]; }; + human_db0 = derive2 { name="human.db0"; version="3.19.1"; sha256="006q28yvh8l5h7pa9qdhcvjd9049bzg1v5nnvphivwn186hv47ww"; depends=[AnnotationDbi]; }; human1mduov3bCrlmm = derive2 { name="human1mduov3bCrlmm"; version="1.0.4"; sha256="1p7qpzk6svafgdafljhh4k0z7pcs78qmwwfd80r0a1yhkssmp0v9"; depends=[]; }; human1mv1cCrlmm = derive2 { name="human1mv1cCrlmm"; version="1.0.3"; sha256="1qlph3qrjv52ddzlj8pwa93zzh70x4mbdrdr7q9pan427lpck9gx"; depends=[]; }; human370quadv3cCrlmm = derive2 { name="human370quadv3cCrlmm"; version="1.0.3"; sha256="1chjx9vsmqz2whslw1l7jn7nfn7zx6pcjfmqqm9mh81i74rzrdik"; depends=[]; }; @@ -518,7 +523,7 @@ in with self; { m20kcod_db = derive2 { name="m20kcod.db"; version="3.4.0"; sha256="1p2sm5j4b50iqzwcb984qrh74c3hf6yml7b8mvxlhhhvxz4iy1np"; depends=[AnnotationDbi org_Mm_eg_db]; }; maizecdf = derive2 { name="maizecdf"; version="2.18.0"; sha256="0yfz5gjhsq4wz6j63s1b1hxjz03gsmrlfs2cdc8smq6azp3zdid4"; depends=[AnnotationDbi]; }; maizeprobe = derive2 { name="maizeprobe"; version="2.18.0"; sha256="01h5dv5i0zaqlphkii9ipxy9wswv1srgprrpr5vmi01c9d98qsk0"; depends=[AnnotationDbi]; }; - malaria_db0 = derive2 { name="malaria.db0"; version="3.18.0"; sha256="1zp2j7vbws2a56xkngfl248xskpj5r58q7sxx6xjipdjk8n13vf3"; depends=[AnnotationDbi]; }; + malaria_db0 = derive2 { name="malaria.db0"; version="3.19.1"; sha256="0gyx0s801pzhcaa0hqbcj69hjgz63b6d764wiflpdg90c79db2is"; depends=[AnnotationDbi]; }; medicagocdf = derive2 { name="medicagocdf"; version="2.18.0"; sha256="1clz679cc887x98c6jk93cphijkbg5r2nd9idrj5901yvh6p9n5q"; depends=[AnnotationDbi]; }; medicagoprobe = derive2 { name="medicagoprobe"; version="2.18.0"; sha256="0w6j1pfkvb3npc8srpjifq2ywnqxhc9q090jqzmkx22x36cw9cl5"; depends=[AnnotationDbi]; }; metaboliteIDmapping = derive2 { name="metaboliteIDmapping"; version="1.0.0"; sha256="0nflpvla3wn8i2gaja5wwjkxk0jich95f5ws3rnhh2a6rx3xi3ql"; depends=[AnnotationHub]; }; @@ -573,7 +578,7 @@ in with self; { mogene20sttranscriptcluster_db = derive2 { name="mogene20sttranscriptcluster.db"; version="8.8.0"; sha256="1bpzpba9aifc7w6qbrh6rnc636k6z1r9gz03sxvc3aa3977p9xag"; depends=[AnnotationDbi org_Mm_eg_db]; }; mogene21stprobeset_db = derive2 { name="mogene21stprobeset.db"; version="8.8.0"; sha256="172bhzqqw5hz76bw8vqwx2qpw4f6rwbcm6savmkxmmhzb2nq60z5"; depends=[AnnotationDbi org_Mm_eg_db]; }; mogene21sttranscriptcluster_db = derive2 { name="mogene21sttranscriptcluster.db"; version="8.8.0"; sha256="02g2n5nkxi9lqw9h7sbkblk99zd57lkrldqb1fmi9zww59qwagrv"; depends=[AnnotationDbi org_Mm_eg_db]; }; - mouse_db0 = derive2 { name="mouse.db0"; version="3.18.0"; sha256="092rjbkrqbkg1997vb4zpyjldv8c541kkx7q95pdpk5qx5aapwqy"; depends=[AnnotationDbi]; }; + mouse_db0 = derive2 { name="mouse.db0"; version="3.19.1"; sha256="00payj4mc0z5s5iv8ai8w1vg2j68xi12qbg4yxcyjc69vslcgpv0"; depends=[AnnotationDbi]; }; mouse4302_db = derive2 { name="mouse4302.db"; version="3.13.0"; sha256="0rf22kfj6y96ap0gcwq3mnpv6fj0yax37gf51sfi0wkmp95k7rcs"; depends=[AnnotationDbi org_Mm_eg_db]; }; mouse4302cdf = derive2 { name="mouse4302cdf"; version="2.18.0"; sha256="1mpyma4x8zfs2fmmx57xw4cfs2cf9lhw71nc3icl72d7vmwidswc"; depends=[AnnotationDbi]; }; mouse4302frmavecs = derive2 { name="mouse4302frmavecs"; version="1.5.0"; sha256="04clwkfz1gqqwrnqbavkka3hv480w6vi6c4q947qqnhw8j5jjp7s"; depends=[]; }; @@ -611,25 +616,26 @@ in with self; { nugomm1a520177probe = derive2 { name="nugomm1a520177probe"; version="3.4.0"; sha256="1n70k0mhv146983myjgk1cgkr9rmmcpqdv8wpkcr320qcvgf9bn7"; depends=[AnnotationDbi]; }; oligoData = derive2 { name="oligoData"; version="1.8.0"; sha256="1d1yfms3jv2c4s255xnh8yxwijrj35skw3nxds7l46y88lg3qn8y"; depends=[oligo]; }; ontoProcData = derive2 { name="ontoProcData"; version="0.99.9901"; sha256="16wwh539hdm89f1vxqfgjmlbqwadnr4xqap80annsqgfn90mi8rk"; depends=[]; }; - org_Ag_eg_db = derive2 { name="org.Ag.eg.db"; version="3.18.0"; sha256="1j9bxz8ypv323wdsp0i0jxv70s14rkq40y1b2n665237rxh0zylz"; depends=[AnnotationDbi]; }; - org_At_tair_db = derive2 { name="org.At.tair.db"; version="3.18.0"; sha256="13lrhfyppn5f5jbnnzqwvjfrmg96a687whv2ws2a3h73i18sxfl1"; depends=[AnnotationDbi]; }; - org_Bt_eg_db = derive2 { name="org.Bt.eg.db"; version="3.18.0"; sha256="0fgrpjfrsw837ay9cq3wd6gp6sxvwjc7r9spfs4m89vqs2xb0bfc"; depends=[AnnotationDbi]; }; - org_Ce_eg_db = derive2 { name="org.Ce.eg.db"; version="3.18.0"; sha256="1fsbrbby6ka2xdsbp8b10nid99w6lkvb7pyn8gv3dsn8p9p6mc5q"; depends=[AnnotationDbi]; }; - org_Cf_eg_db = derive2 { name="org.Cf.eg.db"; version="3.18.0"; sha256="0cfj8cg85vgdz7skpvqkbp7a371w95jywwsjvb5am2wb5hzsnwnp"; depends=[AnnotationDbi]; }; - org_Dm_eg_db = derive2 { name="org.Dm.eg.db"; version="3.18.0"; sha256="1n0rwynw3nl4js104295kff0jk8jwymjk8imm9di6dy6b9s3qsa6"; depends=[AnnotationDbi]; }; - org_Dr_eg_db = derive2 { name="org.Dr.eg.db"; version="3.18.0"; sha256="1kk5jgbzcqhgwf5p4mpxswqhr9rkirm3fb7maflk61zcn6fs56zc"; depends=[AnnotationDbi]; }; - org_EcK12_eg_db = derive2 { name="org.EcK12.eg.db"; version="3.18.0"; sha256="12lqv06n49lwczv5l4h5h6lbfbcqyg9j4csffcdx495scmhc06mc"; depends=[AnnotationDbi]; }; - org_EcSakai_eg_db = derive2 { name="org.EcSakai.eg.db"; version="3.18.0"; sha256="03w6566b3gljs2sjz4ywjkvgr3s33n33877vvmgwapmdwvy6kfs6"; depends=[AnnotationDbi]; }; - org_Gg_eg_db = derive2 { name="org.Gg.eg.db"; version="3.18.0"; sha256="035pxjcyyhv1nd177vp3kmjjfakzdyf0xmadqqih69almkrvd9yb"; depends=[AnnotationDbi]; }; - org_Hs_eg_db = derive2 { name="org.Hs.eg.db"; version="3.18.0"; sha256="1jn556ql6xknfd34qz4bqh6bgc9rccmz6pk41p7ivlzlslz7bp21"; depends=[AnnotationDbi]; }; - org_Mm_eg_db = derive2 { name="org.Mm.eg.db"; version="3.18.0"; sha256="0i35dfllh8wf7b61ajf33gvclzg3znyx3cgp30vs3hm8ys3nras1"; depends=[AnnotationDbi]; }; - org_Mmu_eg_db = derive2 { name="org.Mmu.eg.db"; version="3.18.0"; sha256="1qj06dybpqv17vkmd2bk7x3f20a34p4ra054gywbp9klbgmrk60h"; depends=[AnnotationDbi]; }; + org_Ag_eg_db = derive2 { name="org.Ag.eg.db"; version="3.19.1"; sha256="1j8aaraq4wrj633kwfldycsshyygx1k5bvacpha5qg6g7c00bb79"; depends=[AnnotationDbi]; }; + org_At_tair_db = derive2 { name="org.At.tair.db"; version="3.19.1"; sha256="0g4b2h08z4fy2wq9nskgp3h5vffs9zk3xx1ax1l86wl16ji2591x"; depends=[AnnotationDbi]; }; + org_Bt_eg_db = derive2 { name="org.Bt.eg.db"; version="3.19.1"; sha256="0rbbjv47fadc6jgpqrimsd91f35fw6sw8d805vf61nx5xhbl3lpc"; depends=[AnnotationDbi]; }; + org_Ce_eg_db = derive2 { name="org.Ce.eg.db"; version="3.19.1"; sha256="0vg6nw4qzj8janmkv6k2z471m3l4xnd1h232h0w5i53b20c7p6ys"; depends=[AnnotationDbi]; }; + org_Cf_eg_db = derive2 { name="org.Cf.eg.db"; version="3.19.1"; sha256="07grx4zgba2q4xgs9x7j3ryy12xkl32mzzgfgivxq68xg7ipj2fk"; depends=[AnnotationDbi]; }; + org_Dm_eg_db = derive2 { name="org.Dm.eg.db"; version="3.19.1"; sha256="1sqw38z73sgq66x8qrb5xw0jxyimy7l1hs2iwm7xq9ylzrjw3yj0"; depends=[AnnotationDbi]; }; + org_Dr_eg_db = derive2 { name="org.Dr.eg.db"; version="3.19.1"; sha256="041hp3xhkiwh8vb4zq5kwvrsmp8paqlri6gaj1qy0a5zjlkw0fl6"; depends=[AnnotationDbi]; }; + org_EcK12_eg_db = derive2 { name="org.EcK12.eg.db"; version="3.19.1"; sha256="1af2yrbpn58z34jq39qmmwprzsffgxbrs84dsxny4rksa8k6j70s"; depends=[AnnotationDbi]; }; + org_EcSakai_eg_db = derive2 { name="org.EcSakai.eg.db"; version="3.19.1"; sha256="02wbh31iqdywy0gqj43l9faijxagsa3fcgcx7y8mafwpgd7aqr7m"; depends=[AnnotationDbi]; }; + org_Gg_eg_db = derive2 { name="org.Gg.eg.db"; version="3.19.1"; sha256="0fnxscjps85jmd683212hsp6rs5f4bybcxj8xfqggi4l87fkzng0"; depends=[AnnotationDbi]; }; + org_Hs_eg_db = derive2 { name="org.Hs.eg.db"; version="3.19.1"; sha256="1xrbf0zmik1j70i6bg5wqvfwz4vcf3vgypan36r1lv6lspsfychr"; depends=[AnnotationDbi]; }; + org_Mm_eg_db = derive2 { name="org.Mm.eg.db"; version="3.19.1"; sha256="12d8lrf6bxvqzfxzdbxqmjcywy2myhwhi99kxdwpijsczxxfikj7"; depends=[AnnotationDbi]; }; + org_Mmu_eg_db = derive2 { name="org.Mmu.eg.db"; version="3.19.1"; sha256="0fz2rrw52nsa2mnl3gmx3ap9zjj0w37zyzwnvxzhmi6wmamr1nk4"; depends=[AnnotationDbi]; }; org_Mxanthus_db = derive2 { name="org.Mxanthus.db"; version="1.0.27"; sha256="1jqwsdjz1d8fwqhq26lavb2kq739ddlb8khsh4b096vhnwv3dxg5"; depends=[AnnotationDbi AnnotationHub BiocFileCache BiocStyle]; }; - org_Pt_eg_db = derive2 { name="org.Pt.eg.db"; version="3.18.0"; sha256="0fv0l1fj4d5fza936gx187z3b3yd8cjs0hlb3f9vrsv1zadr3yyf"; depends=[AnnotationDbi]; }; - org_Rn_eg_db = derive2 { name="org.Rn.eg.db"; version="3.18.0"; sha256="1z9wsb7f67mggcsv27zrn50j5c9a3hxc4dygaj2nbma23zxbyjc3"; depends=[AnnotationDbi]; }; - org_Sc_sgd_db = derive2 { name="org.Sc.sgd.db"; version="3.18.0"; sha256="15ngfqimrjpn2fxzngj5m3pvqivbq65010qdx33xs32ax48z6p2r"; depends=[AnnotationDbi]; }; - org_Ss_eg_db = derive2 { name="org.Ss.eg.db"; version="3.18.0"; sha256="0jqrwh4h7shsni9zyygyggmwg89jsc90r7y0gali29yy8wa38h0q"; depends=[AnnotationDbi]; }; - org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.18.0"; sha256="01xr4cpjzdd1v0xw8dbmcjhmcwhi8b3vjhmgsx77c969w9sa0igr"; depends=[AnnotationDbi]; }; + org_Pf_plasmo_db = derive2 { name="org.Pf.plasmo.db"; version="3.19.1"; sha256="1klkhazb4rbmnpp3ywj266202740p1c0xsi6dlz84r2cxsrvw1kn"; depends=[AnnotationDbi]; }; + org_Pt_eg_db = derive2 { name="org.Pt.eg.db"; version="3.19.1"; sha256="1l17ys29ms7iiyflhbk47nvy069rrjpz2f1b5cbfklpr0lzy583b"; depends=[AnnotationDbi]; }; + org_Rn_eg_db = derive2 { name="org.Rn.eg.db"; version="3.19.1"; sha256="0bq42q2j4jddzi2s4lzhmzplbhkd2drw6545ffhcpi4r7ryrzqkn"; depends=[AnnotationDbi]; }; + org_Sc_sgd_db = derive2 { name="org.Sc.sgd.db"; version="3.19.1"; sha256="1sbjwyf0ibivdhhxsaljgqa4lqp3hcf8gcrlcm2vd78bfm5cm7bg"; depends=[AnnotationDbi]; }; + org_Ss_eg_db = derive2 { name="org.Ss.eg.db"; version="3.19.1"; sha256="0cdql2zvgsrirpby6vahkfxqwnfpbs1hmfl55j8i4n4dv184cbhf"; depends=[AnnotationDbi]; }; + org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.19.1"; sha256="0xl3xg4sa5fc7ms6c61pq633y45p2ayh8l02ws1k2yadcmykajrh"; depends=[AnnotationDbi]; }; paeg1acdf = derive2 { name="paeg1acdf"; version="2.18.0"; sha256="127pgxxp5wp3hgmafbzdzsk4gqnllq1m1gcsfyzkvpkvmbn4aa9n"; depends=[AnnotationDbi]; }; paeg1aprobe = derive2 { name="paeg1aprobe"; version="2.18.0"; sha256="0hbyd402wf9nzy2g93nhnf2zsi9jvhgfk0llxlyfk0kqxs0y4byy"; depends=[AnnotationDbi]; }; pd_081229_hg18_promoter_medip_hx1 = derive2 { name="pd.081229.hg18.promoter.medip.hx1"; version="0.99.4"; sha256="1h4925dmw0vfsnhllg55gswq3sxfmx9rcjzifdvgs9y27399psrr"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; }; @@ -809,7 +815,7 @@ in with self; { phastCons35way_UCSC_mm39 = derive2 { name="phastCons35way.UCSC.mm39"; version="3.16.0"; sha256="0lniqakqxja8inq3gn168w1xja1m2kbmww0cw971smsnddypmig7"; depends=[AnnotationHub GenomicScores]; }; phastCons7way_UCSC_hg38 = derive2 { name="phastCons7way.UCSC.hg38"; version="3.7.1"; sha256="105isdrb3nsy30wd8yy9vrrv8b7c8izc11xqqixg6rcriacd0rl0"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; phyloP35way_UCSC_mm39 = derive2 { name="phyloP35way.UCSC.mm39"; version="3.16.0"; sha256="1n0iywfs23dhc54mapirvaqcbx38zjf8lknbsz80p5lxp24n2lf9"; depends=[AnnotationHub GenomicScores]; }; - pig_db0 = derive2 { name="pig.db0"; version="3.18.0"; sha256="05lddwcf205gid4ppq9ch5bp7cjdm36c3hfsdm2jddh4a7nky4vz"; depends=[AnnotationDbi]; }; + pig_db0 = derive2 { name="pig.db0"; version="3.19.1"; sha256="10s39hcyia1w2wik2yxlalnli8a3bw8siqbrnmfyh0hx50plhhmv"; depends=[AnnotationDbi]; }; plasmodiumanophelescdf = derive2 { name="plasmodiumanophelescdf"; version="2.18.0"; sha256="1vs36091djinn3g6rjhmy9xfdyi58365zbcjc9mf50adnp2i5fq9"; depends=[AnnotationDbi]; }; plasmodiumanophelesprobe = derive2 { name="plasmodiumanophelesprobe"; version="2.18.0"; sha256="03hfq51nrpmx8ihc48jiih6bk99irrgal9x7i7mgcv8xd508gcsy"; depends=[AnnotationDbi]; }; poplarcdf = derive2 { name="poplarcdf"; version="2.18.0"; sha256="0j28czs936j2wgwp63qbwl1mjcflcrx7ir88jzxkkw7411ch1gl1"; depends=[AnnotationDbi]; }; @@ -839,7 +845,7 @@ in with self; { ragene20sttranscriptcluster_db = derive2 { name="ragene20sttranscriptcluster.db"; version="8.8.0"; sha256="1bi4wy0sbhsyavxwshxvf3iqmyz26q7y2vqp1h3rjshsjdmhfd0h"; depends=[AnnotationDbi org_Rn_eg_db]; }; ragene21stprobeset_db = derive2 { name="ragene21stprobeset.db"; version="8.8.0"; sha256="1m0hd0nlav9dhqzvs5drl8q3llx2wjxdfvb24fmjnba4h769ns7k"; depends=[AnnotationDbi org_Rn_eg_db]; }; ragene21sttranscriptcluster_db = derive2 { name="ragene21sttranscriptcluster.db"; version="8.8.0"; sha256="14hp03pizq7kprwk26s9w6s27zzbs2kk50qhjbiwic1xbrl0dp8a"; depends=[AnnotationDbi org_Rn_eg_db]; }; - rat_db0 = derive2 { name="rat.db0"; version="3.18.0"; sha256="1g02gq0wwb1f7hmqcpd4ad59xn295zqg1hdzixn20wgkan5yd0ac"; depends=[AnnotationDbi]; }; + rat_db0 = derive2 { name="rat.db0"; version="3.19.1"; sha256="0vl2an3b00h94z1ba29fz83q04p4n641qs4xgp53zz3jg8lgm4si"; depends=[AnnotationDbi]; }; rat2302_db = derive2 { name="rat2302.db"; version="3.13.0"; sha256="1k2qm1rpq3xkj52m3n629r4qcqi2azdssb2i5shj9jdaqkmr43qc"; depends=[AnnotationDbi org_Rn_eg_db]; }; rat2302cdf = derive2 { name="rat2302cdf"; version="2.18.0"; sha256="1748rc6yypd7y8wgr1qg632pcsxx0fkxjz6b3z4fhblgdllhy9wk"; depends=[AnnotationDbi]; }; rat2302frmavecs = derive2 { name="rat2302frmavecs"; version="0.99.11"; sha256="0qy5hf86lrkn20yg6d46kcw9fjc0qhsbzbyavaj1v2zl34xvr1ii"; depends=[affy frma]; }; @@ -847,7 +853,7 @@ in with self; { ratCHRLOC = derive2 { name="ratCHRLOC"; version="2.1.6"; sha256="0mgk6lwvvdwjzjh4r1q1q6nfnx4vqx9iy6gmbrb9f31jf30hqnsb"; depends=[]; }; rattoxfxcdf = derive2 { name="rattoxfxcdf"; version="2.18.0"; sha256="0q84lfaxnnj2zbm5q8xswa1md15fjj4i0djnqr835ixzn7px4yqn"; depends=[AnnotationDbi]; }; rattoxfxprobe = derive2 { name="rattoxfxprobe"; version="2.18.0"; sha256="1kp159553rkcn9yh6x3yph3yjz2ja21wi9j5ax03qnhwlsl1x8ik"; depends=[AnnotationDbi]; }; - reactome_db = derive2 { name="reactome.db"; version="1.86.2"; sha256="02p8ihds0hpcfj5mib0ifql9404svlavfyj36c15jzmbci0rnc8c"; depends=[AnnotationDbi]; }; + reactome_db = derive2 { name="reactome.db"; version="1.88.0"; sha256="1fwbf53vklhvqa6n6pijb8xqyv2pap1hskkirnm5c42wmd6g4ql7"; depends=[AnnotationDbi]; }; rgu34a_db = derive2 { name="rgu34a.db"; version="3.13.0"; sha256="1nl28gia0zh8xkfv8llxiysxk1k1gm6cs2wvl0n1xqhnr0rhla76"; depends=[AnnotationDbi org_Rn_eg_db]; }; rgu34acdf = derive2 { name="rgu34acdf"; version="2.18.0"; sha256="08z9f16xp1m2mwl9vlmbffxl4zyyl8cgzf6wp66rrm32lvl0nbwq"; depends=[AnnotationDbi]; }; rgu34aprobe = derive2 { name="rgu34aprobe"; version="2.18.0"; sha256="1gjxyq9128jgv3ic386f84rajgf3wz7yi2dja80y0ff4m0a48dlh"; depends=[AnnotationDbi]; }; @@ -861,7 +867,7 @@ in with self; { rgug4105a_db = derive2 { name="rgug4105a.db"; version="3.2.3"; sha256="0lq8k95qm0q7j65nf16p3f09dn9zs87n3k561wxrgi2lb0pf6j40"; depends=[AnnotationDbi org_Rn_eg_db]; }; rgug4130a_db = derive2 { name="rgug4130a.db"; version="3.2.3"; sha256="0zlcn9spw23bj3px9z1l2f5afn09zbr6rv0nbd2h6dd12wrvy1zk"; depends=[AnnotationDbi org_Rn_eg_db]; }; rgug4131a_db = derive2 { name="rgug4131a.db"; version="3.2.3"; sha256="1r272jf9cflf1yf4bznp4d59h7bd7adh1i3rf890h5ffc0xzf5cq"; depends=[AnnotationDbi org_Rn_eg_db]; }; - rhesus_db0 = derive2 { name="rhesus.db0"; version="3.18.0"; sha256="08l0srvyac33z7ly90pscfh46ms4yfq2pqw502px095qpk0lfvz1"; depends=[AnnotationDbi]; }; + rhesus_db0 = derive2 { name="rhesus.db0"; version="3.19.1"; sha256="1687fgxx9rj1ghjg7vhmli360algh6piwafdsi4l347sl1yhklcd"; depends=[AnnotationDbi]; }; rhesuscdf = derive2 { name="rhesuscdf"; version="2.18.0"; sha256="0q2alkxm80wkzaf0q80df27q30qkswybavz05x6ywsihbs9h0nb8"; depends=[AnnotationDbi]; }; rhesusprobe = derive2 { name="rhesusprobe"; version="2.18.0"; sha256="0fd8pvwvpcmx41k80nbccjxllh39fvjf7l9dr8facisl1x7gsfil"; depends=[AnnotationDbi]; }; ri16cod_db = derive2 { name="ri16cod.db"; version="3.4.0"; sha256="1xz533vxjdyxx1wkks0kgk6b90sxs44iqcsvyds0xcm573bx8c6q"; depends=[AnnotationDbi org_Rn_eg_db]; }; @@ -884,7 +890,7 @@ in with self; { sugarcanecdf = derive2 { name="sugarcanecdf"; version="2.18.0"; sha256="0wghc6wr7iwkql63m3wibjjdcdpqd53z0g5rxdh553sjb0ca2n7z"; depends=[AnnotationDbi]; }; sugarcaneprobe = derive2 { name="sugarcaneprobe"; version="2.18.0"; sha256="17zrydd8xd7m61bp750xlpcak0m3zgl0mvknz9s7mv2a35kp02ih"; depends=[AnnotationDbi]; }; synaptome_data = derive2 { name="synaptome.data"; version="0.99.6"; sha256="00cqgx06wysz0qyicwnxlc8hpqkj5rwqlyfzsvy7agvcjjkarwg5"; depends=[AnnotationHub]; }; - synaptome_db = derive2 { name="synaptome.db"; version="0.99.15"; sha256="111rg62l8f0k3m0fq8g63lg15agk9bkfcx5z990157cxs0rq07h3"; depends=[AnnotationHub DBI dbplyr dplyr igraph Rdpack RSQLite synaptome_data]; }; + synaptome_db = derive2 { name="synaptome.db"; version="0.99.16"; sha256="0sd3kwhf9gh74j6qiaf1i2qzgn69i9yyvza26aysiplirbsy1jr0"; depends=[AnnotationHub DBI dbplyr dplyr igraph Rdpack RSQLite synaptome_data]; }; targetscan_Hs_eg_db = derive2 { name="targetscan.Hs.eg.db"; version="0.6.1"; sha256="1p14jyhn1d2m6kww9vsb96263g8crnrff7qgyiz46pp9ww8mvxf4"; depends=[AnnotationDbi]; }; targetscan_Mm_eg_db = derive2 { name="targetscan.Mm.eg.db"; version="0.6.1"; sha256="0ad6vxpwn9x82qcrpwcy1lwg0q3ik4vabxn01k6gwmbpvydz9cf5"; depends=[AnnotationDbi]; }; test1cdf = derive2 { name="test1cdf"; version="2.18.0"; sha256="0nmkrp4b2p09pg8ndcnfv5y7w94xah6fa5pff60dp1s2s8dcgcr4"; depends=[AnnotationDbi]; }; @@ -901,8 +907,8 @@ in with self; { vitisviniferaprobe = derive2 { name="vitisviniferaprobe"; version="2.18.0"; sha256="1ggz1s37dwvrkhj4vx2civyhap7bgqsshy33lk14z4fjsayfi39a"; depends=[AnnotationDbi]; }; wheatcdf = derive2 { name="wheatcdf"; version="2.18.0"; sha256="1gmbrdilqvm54h6nkb1cm01ki8aipiywd4qj8gpwlm2hqrimr8kr"; depends=[AnnotationDbi]; }; wheatprobe = derive2 { name="wheatprobe"; version="2.18.0"; sha256="1fifi3pvzdrg356idwz0kx7qlf5mssdxlyvwpn3cjgw0z7n7cnw8"; depends=[AnnotationDbi]; }; - worm_db0 = derive2 { name="worm.db0"; version="3.18.0"; sha256="1kiv5a7mxak12m58c7p9m10k4ip6v63ycgj9mfawa8i70cp1dvap"; depends=[AnnotationDbi]; }; - xenopus_db0 = derive2 { name="xenopus.db0"; version="3.18.0"; sha256="1dacnx0bknhgdlaljm9r54dxxbw7vi6pgxhl2dmprkl9k02cc2q6"; depends=[AnnotationDbi]; }; + worm_db0 = derive2 { name="worm.db0"; version="3.19.1"; sha256="1v24lpw3kfzlzq577vqpqy5bypwfkw1khag7smpq9bgv8dmfcx8r"; depends=[AnnotationDbi]; }; + xenopus_db0 = derive2 { name="xenopus.db0"; version="3.19.1"; sha256="1d6bhq0ppgm087zkh4nmm3qx6f2mp0lblhzvayc6fqyzrzanvjiy"; depends=[AnnotationDbi]; }; xenopuslaeviscdf = derive2 { name="xenopuslaeviscdf"; version="2.18.0"; sha256="1bcz1hr7gxw6ac4qvw0giph6hfcf5i9b11s274ypq512qc1d32iq"; depends=[AnnotationDbi]; }; xenopuslaevisprobe = derive2 { name="xenopuslaevisprobe"; version="2.18.0"; sha256="0prb14zn2gvgxq8w0y21x1ng51cn3bgjhkppf7zkmnq1xkzvq0pw"; depends=[AnnotationDbi]; }; xlaevis_db = derive2 { name="xlaevis.db"; version="3.2.3"; sha256="0cdi71c8pflb8n4yfxc0wmfi51w6z0dlz7nw5hv0hkx547v79d53"; depends=[AnnotationDbi org_Xl_eg_db]; }; @@ -914,7 +920,7 @@ in with self; { ye6100subbcdf = derive2 { name="ye6100subbcdf"; version="2.18.0"; sha256="1169hv56981b915rlr5w5sn6ppyjd8as7f4k1hbjzadrdrl3glwp"; depends=[AnnotationDbi]; }; ye6100subccdf = derive2 { name="ye6100subccdf"; version="2.18.0"; sha256="0mhr4zd33gfvvivc17k7fb6nvmhq6h3q0xbx2zl09zd6qk09kizm"; depends=[AnnotationDbi]; }; ye6100subdcdf = derive2 { name="ye6100subdcdf"; version="2.18.0"; sha256="11b1fflgc34lrj4yf1p7way5n83cm9c7znsbxpzlwddwyy8qib30"; depends=[AnnotationDbi]; }; - yeast_db0 = derive2 { name="yeast.db0"; version="3.18.0"; sha256="1lrni3i2qljkrvpm63rrwhk52m2lr4ci82lxaczbk7spk8yr7mvy"; depends=[AnnotationDbi]; }; + yeast_db0 = derive2 { name="yeast.db0"; version="3.19.1"; sha256="00zbg60zn0yzmfdm017al4hbncrlsdfb5syj8mfxha3522q1114h"; depends=[AnnotationDbi]; }; yeast2_db = derive2 { name="yeast2.db"; version="3.13.0"; sha256="0aqbs3p6f3sc6nyggyk7gvg191b551rwq20009fnk0li50dg1ps6"; depends=[AnnotationDbi org_Sc_sgd_db]; }; yeast2cdf = derive2 { name="yeast2cdf"; version="2.18.0"; sha256="0c68val9x8bfnv4xx0vag9dxwsx5q8dzbj0dpha3nshh12jw48w9"; depends=[AnnotationDbi]; }; yeast2probe = derive2 { name="yeast2probe"; version="2.18.0"; sha256="125nif693qcmxc0nnnz917f9avggcdr8g9rfvx2qdc54a2l7vdb7"; depends=[AnnotationDbi]; }; @@ -923,7 +929,7 @@ in with self; { ygs98frmavecs = derive2 { name="ygs98frmavecs"; version="1.3.0"; sha256="1xrm1209xnknwvad7nvg1a0mbxz15z12yd4x5bia3cq03zcmzf9m"; depends=[]; }; ygs98probe = derive2 { name="ygs98probe"; version="2.18.0"; sha256="0awf6z4j2vb2jk9a9j2r512yd3m31660y68pasa9mp488m270a3q"; depends=[AnnotationDbi]; }; zebrafish_db = derive2 { name="zebrafish.db"; version="3.13.0"; sha256="13a65jxr3r5qjf82h1dr0k9qq20g14canqgqdd11k9gk5h31xhc7"; depends=[AnnotationDbi org_Dr_eg_db]; }; - zebrafish_db0 = derive2 { name="zebrafish.db0"; version="3.18.0"; sha256="0qrd1b5l936jf30dnnmmi5fighwg4zmhz62acq6qzi4r7668g6sk"; depends=[AnnotationDbi]; }; + zebrafish_db0 = derive2 { name="zebrafish.db0"; version="3.19.1"; sha256="1bg35zyxdvdhv0a1l5v61z6g0vz2h2ikad4lyv4akrmwndcrxijy"; depends=[AnnotationDbi]; }; zebrafishcdf = derive2 { name="zebrafishcdf"; version="2.18.0"; sha256="0sq1xqhblbilvaiabhqyl9gxdj3jg576vgq8v0cls1zvvx0isrx0"; depends=[AnnotationDbi]; }; zebrafishprobe = derive2 { name="zebrafishprobe"; version="2.18.0"; sha256="1pb8z2rdhq11hq391xyi236scyafbp56kbhhwsnha36yygz5drw0"; depends=[AnnotationDbi]; }; LRBase_Ath_eg_db = derive2 { name="LRBase.Ath.eg.db"; version="2.0.1"; sha256="1f9yp9rfaydzz24bhl795379clcinibi4kavxzzavrvqfvkrgw84"; depends=[LRBaseDbi RSQLite]; broken = true; }; @@ -1021,7 +1027,6 @@ in with self; { SNPlocs_Hsapiens_dbSNP151_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP151.GRCh38"; version="0.99.21"; sha256="19j5h0dgxd2iw35p6fblj8b3z2d92zmmp60khw5zs70scd5fs9pb"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; broken = true; }; XtraSNPlocs_Hsapiens_dbSNP141_GRCh38 = derive2 { name="XtraSNPlocs.Hsapiens.dbSNP141.GRCh38"; version="0.99.13"; sha256="1fidmrf0xr7wwd4v1y7x2wwyplplbs1z8jqpfdjpc8aclcy38m3f"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; broken = true; }; greengenes13_5MgDb = derive2 { name="greengenes13.5MgDb"; version="2.0.0"; sha256="0j4pd653vlfpd9gq6gi459lra8xhyknjrzadkx9d3zjy0hcwpj7r"; depends=[]; broken = true; }; - org_Pf_plasmo_db = derive2 { name="org.Pf.plasmo.db"; version="3.14.0"; sha256="1fs68n9xyia6v9jj8a91asmrirnh2xkqcgrjbzk7x6ss0rlwcl7w"; depends=[AnnotationDbi]; broken = true; }; ribosomaldatabaseproject11_5MgDb = derive2 { name="ribosomaldatabaseproject11.5MgDb"; version="1.00.0"; sha256="04ppa4k8p54bmkq3jm41h0v4lb5hz95cmnakfzmqfml00ir04mxp"; depends=[]; broken = true; }; silva128_1MgDb = derive2 { name="silva128.1MgDb"; version="1.00.0"; sha256="0pwwxxa55d3919rbczg5iskd03ignimk80m52kfi930b1kdg9qc2"; depends=[]; broken = true; }; } diff --git a/pkgs/development/r-modules/bioc-experiment-packages.nix b/pkgs/development/r-modules/bioc-experiment-packages.nix index f891b4351481e..3cd77c6cf047a 100644 --- a/pkgs/development/r-modules/bioc-experiment-packages.nix +++ b/pkgs/development/r-modules/bioc-experiment-packages.nix @@ -4,445 +4,456 @@ # Rscript generate-r-packages.R bioc-experiment >new && mv new bioc-experiment-packages.nix { self, derive }: -let derive2 = derive { biocVersion = "3.18"; }; +let derive2 = derive { biocVersion = "3.19"; }; in with self; { - ALL = derive2 { name="ALL"; version="1.44.0"; sha256="1ny5xv338a91gc88a1y5rrd27iawrrlmxhkidvc7xdsbrwd4flkc"; depends=[Biobase]; }; - ALLMLL = derive2 { name="ALLMLL"; version="1.42.0"; sha256="1sq2j4gq78d68lqlqnd6nxi66gngzqyxicsyv85xp7dhcl59fwbm"; depends=[affy]; }; - ARRmData = derive2 { name="ARRmData"; version="1.38.0"; sha256="0hlhc7kvw9n1bnbzingd1475qwivpx64sccnigdij8xdcm1mb4s7"; depends=[]; }; - ASICSdata = derive2 { name="ASICSdata"; version="1.22.0"; sha256="01xm27j9c37vqpqz4d9v3bsji1z6ppgf64jja5dd4rz8i3gx9f68"; depends=[]; }; - Affyhgu133A2Expr = derive2 { name="Affyhgu133A2Expr"; version="1.38.0"; sha256="1rvw1z3i8jz0x4ca2fy4xg2z97ffalh15prsd38sz4chj9cwybxc"; depends=[]; }; - Affyhgu133Plus2Expr = derive2 { name="Affyhgu133Plus2Expr"; version="1.36.0"; sha256="10jilz65xba8a43zdvxksll9jpba9a1nj5w266d7laws056m4bh9"; depends=[]; }; - Affyhgu133aExpr = derive2 { name="Affyhgu133aExpr"; version="1.40.0"; sha256="1kdp39k2s35jb3wp4qqm0lbrz94dxz1s9yygv8frfc70xv4hh7af"; depends=[]; }; - AffymetrixDataTestFiles = derive2 { name="AffymetrixDataTestFiles"; version="0.40.0"; sha256="0h8i38qh3krw02v5x4rybh0pmfriy5l3ji6ahk2j0hgjfgq55z5b"; depends=[]; }; - Affymoe4302Expr = derive2 { name="Affymoe4302Expr"; version="1.40.0"; sha256="01zgyp6yy980iyqan7f9qiv7pqzkr4cjli9q5ncig085afp2j88r"; depends=[]; }; - AmpAffyExample = derive2 { name="AmpAffyExample"; version="1.42.0"; sha256="028473p5k69vmm8nh0qpmq30cyjcjaccclnsc7crr6brg2xjzcb6"; depends=[affy]; }; - AneuFinderData = derive2 { name="AneuFinderData"; version="1.30.0"; sha256="03kp8qkqy2wph7lbzawgnh83qjm31ih1jp986qwphfhkfk125wg0"; depends=[]; }; - AshkenazimSonChr21 = derive2 { name="AshkenazimSonChr21"; version="1.32.0"; sha256="0yin4q6bjhbh6a6xb62ac5w0kjb23y3kslrpkf9prr1cz42kvbjx"; depends=[]; }; - AssessORFData = derive2 { name="AssessORFData"; version="1.20.0"; sha256="0lp80w5msdisic9j827wq7gsi9v6vnrchrlcmr2h5vd26plia98x"; depends=[DECIPHER]; }; - BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.40.0"; sha256="052r8snjwqzn49gjwv1fv5vhwl14vcmzwjxb4jgsbnb14wyhiliy"; depends=[beadarray GEOquery limma]; }; - BeadSorted_Saliva_EPIC = derive2 { name="BeadSorted.Saliva.EPIC"; version="1.10.0"; sha256="088c6ikr7cslpx8yx89d3y00zigy6c21qa1m3dlrynghh7z8xi8w"; depends=[ExperimentHub minfi]; }; - BioImageDbs = derive2 { name="BioImageDbs"; version="1.10.0"; sha256="1xgm9n01if7rb6lsgj4cg5dbjl8kq6zvkj4324vrwj1c1mdaa9nv"; depends=[animation AnnotationHub EBImage einsum ExperimentHub filesstrings magick magrittr markdown rmarkdown]; }; - BioPlex = derive2 { name="BioPlex"; version="1.8.0"; sha256="0wwsbv4kyi67favswb5jrcgjv6a02s8gvwc23918y0rlcmkx07m7"; depends=[BiocFileCache GenomeInfoDb GenomicRanges GEOquery graph SummarizedExperiment]; }; - BloodCancerMultiOmics2017 = derive2 { name="BloodCancerMultiOmics2017"; version="1.22.0"; sha256="1ya62fx76ifnbdbws51nw544n12sk4a35qichfc54v0ffbz0n38c"; depends=[beeswarm Biobase DESeq2 devtools dplyr ggdendro ggplot2 glmnet gtable ipflasso RColorBrewer reshape2 scales SummarizedExperiment survival tibble]; }; - CCl4 = derive2 { name="CCl4"; version="1.40.0"; sha256="02fw0c7yy6vch31a726fpn163mi5zj13jvrpczqqshb2wz2qs58c"; depends=[Biobase limma]; }; - CLL = derive2 { name="CLL"; version="1.42.0"; sha256="10l2a562l6hx32sxmvy8z59shq87v770rrh2fhddnj06dpx6n6cf"; depends=[affy Biobase]; }; - CLLmethylation = derive2 { name="CLLmethylation"; version="1.22.0"; sha256="16k05g98j2zs8n827kvgishzcj0zcx12cwzvgznzjrwp56dl72xs"; depends=[ExperimentHub SummarizedExperiment]; }; - COHCAPanno = derive2 { name="COHCAPanno"; version="1.38.0"; sha256="0f85l5alhzb14p30pmk11lv0wn6n4nsx8l9pc545fkwqdm5bsqh3"; depends=[]; }; - CONFESSdata = derive2 { name="CONFESSdata"; version="1.30.0"; sha256="1gjsbrrz06qsa0lwjiil0qprhiajyy7im5wh6xks0ifs8rl9f9y4"; depends=[]; }; - COPDSexualDimorphism_data = derive2 { name="COPDSexualDimorphism.data"; version="1.38.0"; sha256="1mkxf577xa7k1cflrwbdngj6kfhdz2a1dg04x849zm6ahmd3x9vf"; depends=[]; }; - COSMIC_67 = derive2 { name="COSMIC.67"; version="1.38.0"; sha256="0c4nmzdhg2mam134j5p7g5h4g2f08aqj429b03cz83znqy4k25vl"; depends=[GenomicRanges SummarizedExperiment VariantAnnotation]; }; - CRCL18 = derive2 { name="CRCL18"; version="1.22.0"; sha256="1wa9988sv5maml0v0n893m5vf773z0z530dpp5cjk02cd40npcrn"; depends=[Biobase]; }; - CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.34.0"; sha256="0cyzzyki6y2a7m4w7pk7x532a0i539irmpxbba3zs05cjs3213sb"; depends=[Cardinal]; }; - CellMapperData = derive2 { name="CellMapperData"; version="1.28.0"; sha256="12mx1m4lm51y8pazmhrd8ickvvpa2sm9cg2znhs6pzmgc5bj09dx"; depends=[CellMapper ExperimentHub]; }; - ChAMPdata = derive2 { name="ChAMPdata"; version="2.34.0"; sha256="175vsg2bh578fdrdchcma5q3jq7cfxa8b7g8954xv6fxrwcj0ffz"; depends=[BiocGenerics GenomicRanges]; }; - ChIC_data = derive2 { name="ChIC.data"; version="1.22.0"; sha256="1akqpqw9ydf23whr346psciyyp9c3r0rsas1rkdkf8g5wrcj9vhk"; depends=[caret genomeIntervals randomForest]; }; - ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.40.0"; sha256="0i96lkgkzssrsa0gnc5l4f9j4x07cvq4s019v3b2fm5s288lvsnj"; depends=[bigmemory]; }; - ChIPexoQualExample = derive2 { name="ChIPexoQualExample"; version="1.26.0"; sha256="1v35xq0a58kf0nabv3v6aiz9cd3gvwv0asmvq27ha0w1ngwd0dzk"; depends=[]; }; - CluMSIDdata = derive2 { name="CluMSIDdata"; version="1.18.0"; sha256="0xahy0l8b8c7xgg6481vhliiis63brh3rszaj5d1f7sjbgzj7ahs"; depends=[]; }; - CoSIAdata = derive2 { name="CoSIAdata"; version="1.2.0"; sha256="07x44vn6r1d0ixfzx9h3rzzn9gjjci59c41xhqn2b3k6f5c7fa9r"; depends=[ExperimentHub]; }; - ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.38.0"; sha256="0ixvmkyps62f10c0s4z0jas2106hnvijknai6abial6i3plffnsc"; depends=[]; }; - CopyNeutralIMA = derive2 { name="CopyNeutralIMA"; version="1.20.0"; sha256="11l994nhi813qs1vmrqjgclw11k5hrsmcrlj5x5wqmqmnjjw1dsy"; depends=[ExperimentHub Rdpack]; }; - CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.34.0"; sha256="1zfsxi65lln93fb87l6fgp7vxldb4fvnf95h91dl424xyq6qjp1h"; depends=[]; }; - DAPARdata = derive2 { name="DAPARdata"; version="1.32.1"; sha256="1iwiq5z1jnsrdp3pnhxlb2rvcfg91xp7xp2k0ry7r0gr9hjnnhr7"; depends=[MSnbase]; }; - DExMAdata = derive2 { name="DExMAdata"; version="1.10.0"; sha256="1a2hrvbkhpwmjha0iwd17xv60d1cdl7iswc942bcac80mn6sw305"; depends=[Biobase]; }; - DLBCL = derive2 { name="DLBCL"; version="1.42.2"; sha256="06x4jbyz0m9pzwxjl326rl5zahq5km5rryncbq99cz6mml2asn21"; depends=[Biobase graph]; }; - DMRcatedata = derive2 { name="DMRcatedata"; version="2.20.3"; sha256="0fhk71j60s693vh333277ra0vgjys15h6r593v2j1y970650pq0a"; depends=[ExperimentHub GenomicFeatures Gviz IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 plyr readxl rtracklayer]; }; - DNAZooData = derive2 { name="DNAZooData"; version="1.2.0"; sha256="0d5466b830s82laamig1rw0p0n6i4npb11iyziv1sfvs4y8pbhl8"; depends=[BiocFileCache HiCExperiment rjson S4Vectors]; }; - DeSousa2013 = derive2 { name="DeSousa2013"; version="1.38.0"; sha256="1xjygkr8rc1m9sv5bwph3wdf9hhcfdw8zji547nw0ayrg5d49689"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; }; - DmelSGI = derive2 { name="DmelSGI"; version="1.34.0"; sha256="1qsvw7jrn070yfrgrkw9wsdb05g8ai5hmcqmyr78qs5qny0cz919"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; }; - DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.40.0"; sha256="0pxxg6rkdgafxj71mvlbm14vzv414hfh2p24rhyby7glrkzh2vq0"; depends=[EBImage]; }; - DropletTestFiles = derive2 { name="DropletTestFiles"; version="1.12.0"; sha256="0a68xd9ks83a13s1cckmhrc50ijp7dw19yjf37v253q50xjp0z03"; depends=[AnnotationHub ExperimentHub S4Vectors]; }; - DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.38.0"; sha256="03g6syilb9v9cr2snh5w02ng6drff5i86drbmhv24yabwfgp3ndi"; depends=[]; }; - DuoClustering2018 = derive2 { name="DuoClustering2018"; version="1.20.0"; sha256="0248jc4frjwbv5vq0483s2flbrnd70x4bkad7aphfxvrk897sn9v"; depends=[dplyr ExperimentHub ggplot2 ggthemes magrittr mclust purrr reshape2 tidyr viridis]; }; - DvDdata = derive2 { name="DvDdata"; version="1.38.0"; sha256="16352h34az5sjq0bfgx9qs9njkn3nqws584cm1yydh2v60fclv63"; depends=[]; }; - EGSEAdata = derive2 { name="EGSEAdata"; version="1.30.0"; sha256="0m281qwvz1cdfjf605czammw107x23pjpqh1adx5rvacpzgd8gli"; depends=[]; }; - ELMER_data = derive2 { name="ELMER.data"; version="2.26.0"; sha256="0vwzj98pds0n3wc74y84d8srb1rvvf7kn7mjy4zf4d0qrp92sa94"; depends=[GenomicRanges]; }; - EatonEtAlChIPseq = derive2 { name="EatonEtAlChIPseq"; version="0.40.0"; sha256="06mzals24cc4fl5j2w8mwa1s7q98qm80g7gnr5rz4hj66kmiak94"; depends=[GenomicRanges rtracklayer ShortRead]; }; - EpiMix_data = derive2 { name="EpiMix.data"; version="1.4.0"; sha256="15qc8jjbv6b4nxszrj8lkj6cmbvvxlvknksp5pl13s3y176gm4d5"; depends=[ExperimentHub]; }; - FANTOM3and4CAGE = derive2 { name="FANTOM3and4CAGE"; version="1.38.0"; sha256="01qz41q2cw4g7yg4nj7dlqsw6p8bh7dvm22a0vgp5dpm2pjagh15"; depends=[]; }; - FIs = derive2 { name="FIs"; version="1.30.0"; sha256="0pnw0p2n9r1r0a7b1g32s7s2abbvdc976igdf48agkmilkhzpbb4"; depends=[]; }; - FieldEffectCrc = derive2 { name="FieldEffectCrc"; version="1.12.0"; sha256="13xzypr95v5b3kynfn45b7rpg7kd0gcqmx3ap377plqs42nc7pa6"; depends=[AnnotationHub BiocStyle DESeq2 ExperimentHub RUnit SummarizedExperiment]; }; - Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.38.0"; sha256="04rvri7hcc5qd29c0xbkvjylh2x9flk7hf8rngd01fbhk9myxsaj"; depends=[Biobase gplots limma VennDiagram]; }; - Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.38.0"; sha256="1zp7wafibklwc7gr827yk1m6630c4r11nvy1i8jjhriqrjd4hnpn"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; }; - FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.40.0"; sha256="08xli4a24kkyy5q1ka0vyrpk11yfkyp0gxbs0k8khycppsq9s9sn"; depends=[minfi]; }; - FlowSorted_Blood_EPIC = derive2 { name="FlowSorted.Blood.EPIC"; version="2.6.0"; sha256="0vfx1kpy02640nkkkpksisznybv0xb6jkvvkwsybsggcr2rdkl89"; depends=[AnnotationHub ExperimentHub genefilter minfi nlme quadprog S4Vectors SummarizedExperiment]; }; - FlowSorted_CordBlood_450k = derive2 { name="FlowSorted.CordBlood.450k"; version="1.30.0"; sha256="04fx8mc21lflbxdz7fgz0jl30jk4gd09qqn5a654jlqhllnkg9rj"; depends=[minfi]; }; - FlowSorted_CordBloodCombined_450k = derive2 { name="FlowSorted.CordBloodCombined.450k"; version="1.18.0"; sha256="0gl0dwhabdik17al1f1zq2vhg3bgbirxmsa1lxfv97vq08nqfshl"; depends=[AnnotationHub ExperimentHub IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi SummarizedExperiment]; }; - FlowSorted_CordBloodNorway_450k = derive2 { name="FlowSorted.CordBloodNorway.450k"; version="1.28.0"; sha256="16hrhakaxhhilfy5gb0yrwijww8ph20i3qnfkrhhz6gjqh0iyri2"; depends=[minfi]; }; - FlowSorted_DLPFC_450k = derive2 { name="FlowSorted.DLPFC.450k"; version="1.38.0"; sha256="0dj0gcz8mfd0ilihhysrbrzbkvfpwy1dx56g4dsizkg0k6aa8nha"; depends=[minfi]; }; - GIGSEAdata = derive2 { name="GIGSEAdata"; version="1.20.0"; sha256="0qisi43rbjg9y2fglkri3bb1wxn4rcylhlidw2ml4bl7d36rfxdz"; depends=[]; }; - GSBenchMark = derive2 { name="GSBenchMark"; version="1.22.0"; sha256="03ccpc69k0i0pffw0x0f49h71saz68chyppa8ncpyb5aj4lxp2gb"; depends=[]; }; - GSE103322 = derive2 { name="GSE103322"; version="1.8.0"; sha256="018k8vkyr0cvycvkihkajf709jsw0y9mhf8yamzc72x5mwazwhym"; depends=[Biobase GEOquery]; }; - GSE13015 = derive2 { name="GSE13015"; version="1.10.0"; sha256="1jc40g1gxz7rcxcgx11blx9li3fpa605rzs9k2glaglrp373r7dk"; depends=[Biobase GEOquery preprocessCore SummarizedExperiment]; }; - GSE159526 = derive2 { name="GSE159526"; version="1.8.0"; sha256="0z8aywaihmrzfn0pzm5z7pxkpmkrar4090wavvy4vzkqbzdicv8r"; depends=[]; }; - GSE62944 = derive2 { name="GSE62944"; version="1.30.0"; sha256="03wy4jjg6fh1fckmy0fqs776b3mhvrksk7hgkrjg7hr7p9b9dxwp"; depends=[Biobase GEOquery]; }; - GSVAdata = derive2 { name="GSVAdata"; version="1.38.0"; sha256="1a9kspbmsnsrisy5xp5r3s1l7fz34v7riyiqn22hlc87zmnj7y5q"; depends=[Biobase GSEABase hgu95a_db]; }; - GWASdata = derive2 { name="GWASdata"; version="1.40.0"; sha256="0lprcr2r0qzi7pa9pl6cp21z7vkjpn0d6ynnbbzji9ga82hd2njq"; depends=[GWASTools]; }; - GenomicDistributionsData = derive2 { name="GenomicDistributionsData"; version="1.10.0"; sha256="1c9pqmdnnpm80zzsbl3j66xdwb3kzn7jkisx31sn5jaxzc660jc4"; depends=[AnnotationFilter AnnotationHub BSgenome data_table ensembldb ExperimentHub GenomeInfoDb GenomicFeatures GenomicRanges]; }; - GeuvadisTranscriptExpr = derive2 { name="GeuvadisTranscriptExpr"; version="1.30.0"; sha256="12253pncfqvq7c1ajkdgfn4f861w2zk3j6p5xyra7c0d0z47a2b6"; depends=[]; }; - HCAData = derive2 { name="HCAData"; version="1.18.0"; sha256="1rd1qra8g7dn9pg2mhh2j40p7p6ny838n4w6mx5ryw4xky95lf41"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; - HCATonsilData = derive2 { name="HCATonsilData"; version="1.0.0"; sha256="1h5hrfslhyiqc855bb23rz9hahnpcy47h2lz1k0dj8glrjldq0jp"; depends=[base64enc ExperimentHub HDF5Array htmltools rmarkdown S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; - HD2013SGI = derive2 { name="HD2013SGI"; version="1.42.0"; sha256="1xxc85al19qxj17rj1k4q0xp3wgkxr007akmq3an7mqrah0y8hm8"; depends=[EBImage geneplotter gplots limma LSD RColorBrewer splots vcd]; }; - HDCytoData = derive2 { name="HDCytoData"; version="1.22.1"; sha256="1048xgypsw257ihy0ysfxy5443dzhzp2rkjjvpivvrhw4dzl25ir"; depends=[ExperimentHub flowCore SummarizedExperiment]; }; - HEEBOdata = derive2 { name="HEEBOdata"; version="1.40.0"; sha256="1xijrm32p191qydz1gkm8321b8ycb9h6y6m1qvc8shlhbbzw705h"; depends=[]; }; - HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.42.0"; sha256="0kyblhc6fdc5c45qyqcr2qnmp1zrwdrc0j91fml04pw5yxrf6dw0"; depends=[]; }; - HMP16SData = derive2 { name="HMP16SData"; version="1.22.0"; sha256="1ns7yyw0w8rrkw87awrrzxmb44gkkb1cn6j3cbzj8fbrd9whl30d"; depends=[AnnotationHub assertthat dplyr ExperimentHub kableExtra knitr magrittr readr S4Vectors stringr SummarizedExperiment tibble]; }; - HMP2Data = derive2 { name="HMP2Data"; version="1.16.0"; sha256="1xrvslsybzy1zjvck6imrjxzd0hsiyx4ly71ndirxs7yhh13d1qk"; depends=[AnnotationHub assertthat data_table dplyr ExperimentHub kableExtra knitr magrittr MultiAssayExperiment phyloseq readr S4Vectors SummarizedExperiment]; }; - HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="1.22.0"; sha256="1nf6jsjvy3qacwz0dl5jc9h87xhj9q73b0g49c2yrxvv1dhayq0i"; depends=[]; }; - HarmanData = derive2 { name="HarmanData"; version="1.30.0"; sha256="0mqv76lj2amb18k5533r6lc42g4a0jggcj7h2dh1lk1hl973asqg"; depends=[]; }; - HarmonizedTCGAData = derive2 { name="HarmonizedTCGAData"; version="1.24.0"; sha256="1sfb7kzmwdvv71bf56z6sd81dfrs4v53igmnxphrvjiymdjxrb3b"; depends=[ExperimentHub]; }; - HelloRangesData = derive2 { name="HelloRangesData"; version="1.28.0"; sha256="09jrcwrn5vjsva2fz28193llhrysswhxyq83rczi5dnimr5qqnxc"; depends=[]; }; - HiBED = derive2 { name="HiBED"; version="1.0.0"; sha256="1cacjpghp5zbbcvn0fpfyhg56dx9bfa8d2qwf1dvbmwwcm85l0vw"; depends=[AnnotationHub dplyr FlowSorted_Blood_EPIC FlowSorted_DLPFC_450k minfi SummarizedExperiment tibble]; }; - HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="1.22.0"; sha256="1jy5hpq8vdki23yy3ivlhqj6k80z1rnby4xrk83wk0rxiz4sdxix"; depends=[]; }; - HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.38.0"; sha256="1a6kf55sqqpqs3gk76np9payqj9i75ggn06iy46cazslnhnvmdvg"; depends=[]; }; - HiContactsData = derive2 { name="HiContactsData"; version="1.4.0"; sha256="07i91rz7bn6g27wbjrwgck3mdmj8lrsdda6pza9k1ghh5zssrx7i"; depends=[AnnotationHub BiocFileCache ExperimentHub]; }; - HighlyReplicatedRNASeq = derive2 { name="HighlyReplicatedRNASeq"; version="1.14.0"; sha256="1zz6xqn9amlh7v7v8c67i4n94lxc8w46g3gqnhbrlcpi6zid36a9"; depends=[ExperimentHub S4Vectors SummarizedExperiment]; }; - Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.38.0"; sha256="04ywn2nw551x082v9pxglxl83kfccsds566lwkpa87098i4wdx85"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; }; - HumanAffyData = derive2 { name="HumanAffyData"; version="1.28.0"; sha256="0g24nr0jdw6509xjski83jf2r35iklmnhqikmfr90ki4rn0fqar0"; depends=[Biobase ExperimentHub]; }; - IHWpaper = derive2 { name="IHWpaper"; version="1.30.0"; sha256="06qbcnq2i0qjc4xqld3gd8746qpvxy4avqba82vzdk0h95kxirmj"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; }; - ITALICSData = derive2 { name="ITALICSData"; version="2.40.0"; sha256="0fzx2qqykma2r2ds53wik4kb9a0wvybr63vf34s91731k21mgsqn"; depends=[]; }; - Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.38.0"; sha256="1h0qcdmyd22x5y5iwi1w89ppb1k3nb2awwim1lcxgdinab8km52b"; depends=[]; }; - IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.40.0"; sha256="08fb7aywjjka5lrpb46cd322sfnhcch5ilf5aq0a2sdq12m2psyi"; depends=[]; }; - Iyer517 = derive2 { name="Iyer517"; version="1.44.0"; sha256="1zahcx2kjspm3bvgxklfgd34srlrxcq9xcj37qa20b08892llkk7"; depends=[Biobase]; }; - JASPAR2014 = derive2 { name="JASPAR2014"; version="1.38.0"; sha256="1ha5nm4v28bfxxa6jqkag7hy0b7bph15v1qs8xwd9w2wam2znazx"; depends=[Biostrings]; }; - JASPAR2016 = derive2 { name="JASPAR2016"; version="1.30.0"; sha256="0dyx29f7jnyqcj85j2yrl8jcphi2kymx2y2mk7ws25xcahl5zzpy"; depends=[]; }; - KEGGandMetacoreDzPathwaysGEO = derive2 { name="KEGGandMetacoreDzPathwaysGEO"; version="1.22.0"; sha256="1rmn5zx5p4c8is5dd80nppl1r8ciyccwhiir0312bpaaplyc9qks"; depends=[Biobase BiocGenerics]; }; - KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.40.0"; sha256="05s6cq27cdw9w9laq5hxjiynjavd873w2idpwa1k4kw0rdsni8cb"; depends=[Biobase BiocGenerics]; }; - KOdata = derive2 { name="KOdata"; version="1.28.0"; sha256="1dflsvfz7c2ahs60s4wx8mc9ar8qrz9ax8g9m67jchygcmqs4jla"; depends=[]; }; - LRcellTypeMarkers = derive2 { name="LRcellTypeMarkers"; version="1.10.0"; sha256="1wad78cpgf9pl8hl4issb0k1m0dlrk0bradkdz5b5a5pamlwh82c"; depends=[ExperimentHub]; }; - LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.40.0"; sha256="06qifvjaxjz51p2vkfdzxjbj5040772y3gzc0qpzsh5fapprkxv9"; depends=[IRanges KernSmooth]; }; - ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.34.0"; sha256="15v80d554pai4584dhy3nzwva38b9r6997br7xqysj7v8x2f4392"; depends=[methylPipe]; }; - LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.38.0"; sha256="1d0zfx6sqwanyh67996v008sjkscskm5z24n9siklc9w416nqa63"; depends=[]; }; - LungCancerLines = derive2 { name="LungCancerLines"; version="0.40.0"; sha256="0yr7l7964nkwlz6s9hsdab2sihrngk9wqakrn4pm5h8m15f8ls46"; depends=[Rsamtools]; }; - M3DExampleData = derive2 { name="M3DExampleData"; version="1.28.0"; sha256="0rp1zp14wvfwy67m0ph8amm41frj76gfylacdbdjyblcpdgzzlnq"; depends=[]; }; - MACSdata = derive2 { name="MACSdata"; version="1.10.0"; sha256="117jy39rn972hzwcckx5wdsrsxfzhwbx4wb6air4l7xcb6qmfrj1"; depends=[]; }; - MAQCsubset = derive2 { name="MAQCsubset"; version="1.40.0"; sha256="1qqn4mf2jrdkn28n1npzag50m24j29nm0adcj276s8fgwdayv434"; depends=[affy Biobase lumi]; }; - MAQCsubsetILM = derive2 { name="MAQCsubsetILM"; version="1.40.0"; sha256="1bb158bmy7195wnj0wap08g621xbzflvj30pv4l7mwc54lm1vqfx"; depends=[Biobase lumi]; }; - MEDIPSData = derive2 { name="MEDIPSData"; version="1.38.0"; sha256="1lrxg5vrfqxrnnpn8m3ypk3ikc6pa7pszxfi08gaa3a4c2glcc4m"; depends=[]; }; - MEEBOdata = derive2 { name="MEEBOdata"; version="1.40.0"; sha256="0ni928njn0hm38njgbnz223pvpq1318si12z5d56h3cczi2f3a37"; depends=[]; }; - MMAPPR2data = derive2 { name="MMAPPR2data"; version="1.16.0"; sha256="16ang08nc4jw8m4faacd0rhv47h5wlp771nd6d8bn1r6d5b9si3w"; depends=[Rsamtools]; }; - MMDiffBamSubset = derive2 { name="MMDiffBamSubset"; version="1.38.0"; sha256="1awhcc4zjmzwqc35xv1l2alybbnv1b16bbxn85xywdq0qyj8zgxp"; depends=[]; }; - MOFAdata = derive2 { name="MOFAdata"; version="1.18.0"; sha256="1pl593dlf87g88bdabqqn2a9b1vkgg4znp1l9wbyk49a35l2rqy1"; depends=[]; }; - MSMB = derive2 { name="MSMB"; version="1.20.0"; sha256="1nq9y7c3y0q1040fzsg5hiavqq4n1778cry420f03db1yg40lns0"; depends=[tibble]; }; - MUGAExampleData = derive2 { name="MUGAExampleData"; version="1.22.0"; sha256="1q8bqqpc14iymmmmv87yqzkpjlzq4r801hjav8kymsw66zlqi0rq"; depends=[]; }; - MerfishData = derive2 { name="MerfishData"; version="1.4.1"; sha256="055wmm0r8wyv8i2kil5f5lh5n2kjw36q4yrpqswf0fvdsvvrpaak"; depends=[AnnotationHub BumpyMatrix EBImage ExperimentHub S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; - MetaGxBreast = derive2 { name="MetaGxBreast"; version="1.22.0"; sha256="0b0s7g4ijqlsfbr8wdrs1g54hba9ry6i1af71ly0v6l7ff0j65r1"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; - MetaGxOvarian = derive2 { name="MetaGxOvarian"; version="1.22.0"; sha256="0k144fi1i9c1rlsif2pfk4lyzk25lkpfp1c4yanqqzbij8z50y6k"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; - MetaGxPancreas = derive2 { name="MetaGxPancreas"; version="1.22.0"; sha256="0a5daghij0c6ykdh2vvd0gmrinqbvnn2hm8apga768ib04ylhb13"; depends=[AnnotationHub ExperimentHub impute S4Vectors SummarizedExperiment]; }; - MetaScope = derive2 { name="MetaScope"; version="1.2.0"; sha256="0wpp2h3zldvcw9r8bjbbpcvkd3hgh11dp8qalcbm36kx4djc2d1a"; depends=[BiocFileCache Biostrings data_table dplyr ggplot2 magrittr Matrix MultiAssayExperiment Rbowtie2 readr rlang Rsamtools S4Vectors stringr SummarizedExperiment taxize tidyr]; }; - MethylAidData = derive2 { name="MethylAidData"; version="1.34.0"; sha256="0kn20wsij54c3i2w3yai97qqmnbawsz0326ai5zrlkalkra4w1r9"; depends=[MethylAid]; }; - MethylSeqData = derive2 { name="MethylSeqData"; version="1.12.0"; sha256="0bw450ada6nnz19d2b9qvx0szyldswrsmy21vsm0dw7idh4xfj6c"; depends=[ExperimentHub GenomeInfoDb GenomicRanges HDF5Array IRanges rhdf5 S4Vectors SummarizedExperiment]; }; - MicrobiomeBenchmarkData = derive2 { name="MicrobiomeBenchmarkData"; version="1.4.0"; sha256="1546ccbnz86scdslf17rzsvyc7h0pb4mw77b17jicfwr8h4qff25"; depends=[ape BiocFileCache S4Vectors SummarizedExperiment TreeSummarizedExperiment]; }; - MouseGastrulationData = derive2 { name="MouseGastrulationData"; version="1.16.0"; sha256="0m03wrqgfhlyc0rmjjcj8b9gcc2rv644hffnff3j1bnkjg5rldi0"; depends=[BiocGenerics BumpyMatrix ExperimentHub S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; - MouseThymusAgeing = derive2 { name="MouseThymusAgeing"; version="1.10.0"; sha256="19p7a0k565yz5201klib85z2gwqss0ywbv66sh0bvk4g5cmd9k0y"; depends=[BiocGenerics ExperimentHub S4Vectors SingleCellExperiment SummarizedExperiment]; }; - NCIgraphData = derive2 { name="NCIgraphData"; version="1.38.0"; sha256="1haia26flsmh553z0pn4zh4s9w3smkl5q16hmz4vpfwkgc3f9506"; depends=[]; }; - NGScopyData = derive2 { name="NGScopyData"; version="1.22.0"; sha256="0858c5cqkjlk55whiravwmnia26yfkgw4656zfscpdfz2n9xm50m"; depends=[]; }; - NanoporeRNASeq = derive2 { name="NanoporeRNASeq"; version="1.12.0"; sha256="0jvwl6k12acinwsvs62vx7dpnhjbcvhf8sbdw13gwwknrn96hgh4"; depends=[ExperimentHub]; }; - NestLink = derive2 { name="NestLink"; version="1.18.0"; sha256="1nr7ddlrbd4q963750x3cdnn7y6mf2y5q3v37ilhfplypnynlgy1"; depends=[AnnotationHub Biostrings ExperimentHub gplots protViz ShortRead]; }; - NetActivityData = derive2 { name="NetActivityData"; version="1.4.0"; sha256="1h3ih2y9jl5d3xk5fydgs9s9bsny3lksn67jxmrksxxrabr5zknl"; depends=[]; }; - Neve2006 = derive2 { name="Neve2006"; version="0.40.0"; sha256="0an77i7z2pqrgizd0z5n4iihg9zp3xbl8rgnfphsh9q3fbvwp185"; depends=[annotate Biobase hgu133a_db]; }; - NxtIRFdata = derive2 { name="NxtIRFdata"; version="1.8.0"; sha256="0gvx81w5krzdzz4v09qlscr0hklzmxq2pz4slwwy1dflq0rjswk5"; depends=[BiocFileCache ExperimentHub R_utils rtracklayer]; }; - OMICsPCAdata = derive2 { name="OMICsPCAdata"; version="1.20.0"; sha256="1jbdyxqyjp4yn6ywk80gin29wi5szwnz661l9hb8gcfbmhv5m1sv"; depends=[MultiAssayExperiment]; }; - ObMiTi = derive2 { name="ObMiTi"; version="1.10.0"; sha256="1sgl38mbnv99miy6n2gps9r5dzhadf1gvin95nif379kdq6xl0nz"; depends=[ExperimentHub SummarizedExperiment]; }; - OnassisJavaLibs = derive2 { name="OnassisJavaLibs"; version="1.24.0"; sha256="0ynb0n4d1ic1xhnwvqxvncr3vm5kwl3y0771rivrz6rrynfchy4c"; depends=[rJava]; }; - PCHiCdata = derive2 { name="PCHiCdata"; version="1.30.0"; sha256="19xzn1agfn34y16prfcgwzbz40bw654zj28lhamiv2mvljxy60jx"; depends=[Chicago]; }; - PREDAsampledata = derive2 { name="PREDAsampledata"; version="0.42.0"; sha256="1ps8m8g0s5vsxhhr80ylxcngnn7xipfc70cyxszwmhcwgy1ghwja"; depends=[affy annotate Biobase PREDA]; }; - PWMEnrich_Dmelanogaster_background = derive2 { name="PWMEnrich.Dmelanogaster.background"; version="4.36.0"; sha256="02aiy2qb62r8qgi5gaj2scra46qgf4wh3lzpqvsxbi7c2glnp7ig"; depends=[PWMEnrich]; }; - PWMEnrich_Hsapiens_background = derive2 { name="PWMEnrich.Hsapiens.background"; version="4.36.0"; sha256="0fr775h5k98xspmjpyf363dav38j7cixnmhapfsy8ijijyl4g8jw"; depends=[PWMEnrich]; }; - PWMEnrich_Mmusculus_background = derive2 { name="PWMEnrich.Mmusculus.background"; version="4.36.0"; sha256="1gwmilyikslgp56xrff2sqqm32lmdq589cya19cm0yi7pa17fqdw"; depends=[PWMEnrich]; }; - PasillaTranscriptExpr = derive2 { name="PasillaTranscriptExpr"; version="1.30.0"; sha256="17482ypqdvgc6p3fvkfdwfcpm3gn4rfd6zjsnlbqc99dpikq13sr"; depends=[]; }; - PathNetData = derive2 { name="PathNetData"; version="1.38.0"; sha256="07wq6526ihrzmyk2rql0zpkr6qkg6rdkk2f03lxkaq7fsbidb03q"; depends=[]; }; - PepsNMRData = derive2 { name="PepsNMRData"; version="1.20.0"; sha256="1xy05yd2nzrl2s0bjsr9y94rwcm68gglbijxplalyy3ppcwwm55c"; depends=[]; }; - PhyloProfileData = derive2 { name="PhyloProfileData"; version="1.16.0"; sha256="1r51zrvm8n7w66ii97wz6ncz0d7s473ppdn8b958mh15w81rk5fr"; depends=[BiocStyle Biostrings ExperimentHub]; }; - ProData = derive2 { name="ProData"; version="1.40.0"; sha256="099xf8143k2z74nb1hdlswrv1gjmg41255x0njxa4wzdwlpyp5k2"; depends=[Biobase]; }; - PtH2O2lipids = derive2 { name="PtH2O2lipids"; version="1.28.0"; sha256="1rx0sg5nz7i20d74y0cq6nybc1q62h0d9rpi3dk02jfngk3zzb5d"; depends=[CAMERA LOBSTAHS xcms]; }; - QDNAseq_hg19 = derive2 { name="QDNAseq.hg19"; version="1.32.0"; sha256="01fnbbkyfpim0xh6v0bm553pmrg9n3bnwn4adds0p47lai1n7dr8"; depends=[QDNAseq]; }; - QDNAseq_mm10 = derive2 { name="QDNAseq.mm10"; version="1.32.0"; sha256="0x54ncmxqb1qci41qy7q9gskx7zp1rcpad3wvil023h81l1s5pg6"; depends=[QDNAseq]; }; - QUBICdata = derive2 { name="QUBICdata"; version="1.30.0"; sha256="0apbndslrdrflmwvz456q31x3mr1p7v7kpbl0fp0hajadjb38aha"; depends=[]; }; - RGMQLlib = derive2 { name="RGMQLlib"; version="1.22.0"; sha256="1sys8vji70mkd100zy84ywv6ralr5k7z1044rn03wp75s1h8klwy"; depends=[]; }; - RITANdata = derive2 { name="RITANdata"; version="1.26.0"; sha256="0jkcf4g2h6bpx0v8ybwnrni3qq9hajxxprfq9pszpmf4xb9cmgs2"; depends=[]; }; - RMassBankData = derive2 { name="RMassBankData"; version="1.40.0"; sha256="190q4q8201i1v3bb4snasxy2kbwvnppq9kpqmxa1hg9mlvk643fq"; depends=[]; }; - RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.40.0"; sha256="0s5bb73ixp2zhzj0ssq3kai6ijrpn9flg23f1n2vsi2vf66wfajj"; depends=[Biobase fields gdata genefilter lattice MASS RNAinteract sparseLDA]; }; - RNAmodR_Data = derive2 { name="RNAmodR.Data"; version="1.16.0"; sha256="0p9x1j4ra11banvifh5z07i26b2s59b2knbgj44yx4qi0d3cnn81"; depends=[ExperimentHub ExperimentHubData]; }; - RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.40.0"; sha256="1gdwsbkjnb3927ihq2gbwrksvhm61wm114bwhazypmpnnwcfv27f"; depends=[]; }; - RRBSdata = derive2 { name="RRBSdata"; version="1.22.0"; sha256="1visrkyxljp3d7h7qgf72l71w91vah93qmi733s15zmsm090sf1c"; depends=[BiSeq]; }; - RTCGA_CNV = derive2 { name="RTCGA.CNV"; version="1.30.0"; sha256="0akfifgkkhzrrw21gxm4h2liam5f7rd2ghidyr21c6660wg1444c"; depends=[RTCGA]; }; - RTCGA_PANCAN12 = derive2 { name="RTCGA.PANCAN12"; version="1.30.0"; sha256="1iz72gbpm0msiasrc0xyiw9c3s2a59fgbz7kfrlwskspqvm9pvdl"; depends=[RTCGA]; }; - RTCGA_RPPA = derive2 { name="RTCGA.RPPA"; version="1.30.0"; sha256="1ln4v06pf2skxaa0vcwp9m2vkczm5bc37kfczqg022n0fi7wa084"; depends=[RTCGA]; }; - RTCGA_clinical = derive2 { name="RTCGA.clinical"; version="20151101.32.0"; sha256="0ivfq9z66v9a867v4c6581v7pmbcwy1g6fr5bgs1fp0n7rl6b15g"; depends=[RTCGA]; }; - RTCGA_mRNA = derive2 { name="RTCGA.mRNA"; version="1.30.0"; sha256="1wf5rxxxa3qgihpa9hbcabryz74k3vc1yp2mscs4w0zdym48fw78"; depends=[RTCGA]; }; - RTCGA_methylation = derive2 { name="RTCGA.methylation"; version="1.30.0"; sha256="1g543scp553gya9ax7c7rm93gra1mqhv93y8jj9hvv7sq5mx469j"; depends=[RTCGA]; }; - RTCGA_miRNASeq = derive2 { name="RTCGA.miRNASeq"; version="1.30.0"; sha256="1hvb77c44vbhyqbpqrid5vrashqng3clpqm5svr7fq6xhqaj3v34"; depends=[RTCGA]; }; - RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="20151101.32.0"; sha256="1n265xk9rr491rlcgy98nvvxmnhjf9b4x80qbc9xlb0ks3hpgx13"; depends=[RTCGA]; }; - RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="20151101.32.0"; sha256="1nmn9dqp6kdsz7536wln8wv1ms8nlgys7xlmc555q1irc1pz4ksc"; depends=[RTCGA]; }; - RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="1.22.0"; sha256="1sqkvkwlvwwspj6xg3xq062s2brr6yjmhw5dlccrjff0qcc9w41p"; depends=[Biobase]; }; - RcisTarget_hg19_motifDBs_cisbpOnly_500bp = derive2 { name="RcisTarget.hg19.motifDBs.cisbpOnly.500bp"; version="1.22.0"; sha256="0yhalgrj0p99ka7wfcnb70adjy4n7zlk9caxd5fk8hhspzkwzkfp"; depends=[data_table]; }; - ReactomeGSA_data = derive2 { name="ReactomeGSA.data"; version="1.16.1"; sha256="18n4shnlbgz6vv63hljzcpz1yd2y4p0gwgj6i37lvr4p7hmg7bi3"; depends=[edgeR limma ReactomeGSA Seurat]; }; - RegParallel = derive2 { name="RegParallel"; version="1.20.0"; sha256="0fxvzj5vgsdq2jm467a5ddya5p6603rzhklh8hmdn9d352yzy01i"; depends=[arm data_table doParallel foreach iterators stringr survival]; }; - RforProteomics = derive2 { name="RforProteomics"; version="1.40.0"; sha256="11cjlhvk04r0flf0wr7n4qmlazaaw4kd5gs589h95mblsmk4andx"; depends=[BiocManager biocViews MSnbase R_utils]; }; - RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.34.0"; sha256="0mv6pqkhwiwdq72dh0m79c7inpkvz8nwy4m8b93sjy1wi76wgci6"; depends=[GenomicRanges]; }; - RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.34.0"; sha256="19l875n3injnn1af01jmlf62a6dgd9mn54ppcsy1x71wrcs1lk25"; depends=[GenomicRanges]; }; - RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="2.10.0"; sha256="0x1nxgdwad42k39mrfilbi1kkm9avm0cbcrhsrxs67ajng9qmci8"; depends=[GenomicRanges]; }; - RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.34.0"; sha256="1d7lshk5a8zn4wi4f5b8q4d206i379iv6gxxsbzygrlnk74j9kzf"; depends=[GenomicRanges]; }; - RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.34.0"; sha256="182pdfi6dvz4r5v41r62d0rsxkm5vlrl7y6pwx9nx3h1gaiybl8s"; depends=[GenomicRanges]; }; - RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.34.0"; sha256="0p2q7phn40ax94yh43xg72fmnnljfi6cfiyaad39br1hi2b6hrjf"; depends=[edgeR]; }; - SBGNview_data = derive2 { name="SBGNview.data"; version="1.16.0"; sha256="1nprhg7rkia9jwy8mqx7iqdh1qs81nk9al8fvv1ynq2cc9x77jfr"; depends=[bookdown knitr rmarkdown]; }; - SCLCBam = derive2 { name="SCLCBam"; version="1.34.0"; sha256="0jnpg8qdbd5b6809glzg68n12bavnpqaaarn2vfv5c6055qg6jgy"; depends=[]; }; - SFEData = derive2 { name="SFEData"; version="1.4.0"; sha256="0wkb27cs4zvvhclgk2slx8n7jx1mx3q87kn86n4rjdcx2074ndqz"; depends=[AnnotationHub BiocFileCache ExperimentHub]; }; - SNAData = derive2 { name="SNAData"; version="1.48.0"; sha256="0qd48ggg1wjy5h47hzl9iqzy13gsxxn4f7fq4b0ra35vhckmcvyf"; depends=[graph]; }; - SNAGEEdata = derive2 { name="SNAGEEdata"; version="1.38.0"; sha256="17wbf4xsljkryzjpk57kvjbiln0ig8d717j953wy0inz7vzdkpkn"; depends=[]; }; - SNPhoodData = derive2 { name="SNPhoodData"; version="1.32.0"; sha256="0p8361lmlfz496ivw9qaqkg7b3hr4gb9g9r73fxp6amy2xncb00g"; depends=[]; }; - STexampleData = derive2 { name="STexampleData"; version="1.10.1"; sha256="1fr29mnczvglpkwh4vdy6klahv014ikmxwx055x4grkxvygbqm23"; depends=[ExperimentHub SpatialExperiment]; }; - SVM2CRMdata = derive2 { name="SVM2CRMdata"; version="1.34.0"; sha256="1k7cjakxcqq86xvx0d0799hb94hi7w05amd9yncd0nf4dcy6zm0f"; depends=[]; }; - SimBenchData = derive2 { name="SimBenchData"; version="1.10.0"; sha256="1g5wff2hx3sra48wcvwh3hs9lpfavq2pqflcm9wfcch9y10m8iqd"; depends=[ExperimentHub S4Vectors]; }; - Single_mTEC_Transcriptomes = derive2 { name="Single.mTEC.Transcriptomes"; version="1.30.0"; sha256="1w3f71mfq74sjlsasi87gvqs2mhny41zm22zswz9km5msi8r2wva"; depends=[]; }; - SingleCellMultiModal = derive2 { name="SingleCellMultiModal"; version="1.14.0"; sha256="0kwff2nqv7nf7rqifyzr6klba6k1h29y4332b60k7hv3psjsm015"; depends=[AnnotationHub BiocBaseUtils BiocFileCache ExperimentHub HDF5Array Matrix MultiAssayExperiment S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; - SingleMoleculeFootprintingData = derive2 { name="SingleMoleculeFootprintingData"; version="1.10.0"; sha256="1chlik8ycsiw0kvxikiplb5xkj4afi4qniy666csyqlksaflr703"; depends=[ExperimentHub]; }; - SomatiCAData = derive2 { name="SomatiCAData"; version="1.40.0"; sha256="0m92db12a9h7866l3vbvpqnxnvkbik8znh3l6qyl22l438wvd8b2"; depends=[]; }; - SomaticCancerAlterations = derive2 { name="SomaticCancerAlterations"; version="1.38.0"; sha256="140bn20n60dnsb3li0ygnymfb7wwgh523yx8pmc6zvyx6izdg618"; depends=[GenomicRanges IRanges S4Vectors]; }; - SpatialDatasets = derive2 { name="SpatialDatasets"; version="1.0.0"; sha256="1szsggymx05swr4i5mgxcxk7jbz8qh6xxwpnmmzajns03gmszggy"; depends=[ExperimentHub SpatialExperiment]; }; - SpikeIn = derive2 { name="SpikeIn"; version="1.44.0"; sha256="04saqrdzl1irdbvgr9s86sgwsvnlp5l4xbx16wj41476rbzhg2aw"; depends=[affy]; }; - SpikeInSubset = derive2 { name="SpikeInSubset"; version="1.42.0"; sha256="14w4g6n0nn1mg9wifqp2jrxb0hy2sqfcnycwhvir1znfck83fzir"; depends=[affy Biobase]; }; - TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.38.0"; sha256="1f09l2ihh80cqqg6sw5ypa51c1zsspkq2g06lbfi19zgllcfh80f"; depends=[Rsamtools xtable]; }; - TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.38.0"; sha256="0pz8xmi4zxp1qvpcwhf54sy5lhpaspdlad1dlrhxgjbfm8xl535q"; depends=[]; }; - TCGAWorkflowData = derive2 { name="TCGAWorkflowData"; version="1.26.0"; sha256="03p3ifgr9w737v9dvx1qvj2kdyf1l9a2qnmwii0nmlak9dp1cc52"; depends=[SummarizedExperiment]; }; - TCGAbiolinksGUI_data = derive2 { name="TCGAbiolinksGUI.data"; version="1.22.0"; sha256="04fmnqa95rb2lgflcg3d7kbz9jj990r9hlxwlhhzb79dv9wd1mfa"; depends=[]; }; - TCGAcrcmRNA = derive2 { name="TCGAcrcmRNA"; version="1.22.0"; sha256="0vwd0pi8g4pmz8g61c0mr0njha6qsm5m1z7iyf0lnwrm6y6bv6px"; depends=[Biobase]; }; - TCGAcrcmiRNA = derive2 { name="TCGAcrcmiRNA"; version="1.22.0"; sha256="0qrcj2mb58dwdwfpypnwyb2f7kcjjyqnyz4v42rc43r04xy14l2m"; depends=[Biobase]; }; - TENxBUSData = derive2 { name="TENxBUSData"; version="1.16.0"; sha256="071qbq0avzbs6c64l6lrmrs1hmbrg98bnf91vpz4x7s0p5axx87n"; depends=[AnnotationHub BiocGenerics ExperimentHub]; }; - TENxBrainData = derive2 { name="TENxBrainData"; version="1.22.0"; sha256="1ia7a6jq7giy130avgv5brffxk5r2yql7rjppxs9nab3a6y472yy"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; - TENxPBMCData = derive2 { name="TENxPBMCData"; version="1.20.0"; sha256="09pgf31x1zqcrnvf2fwdbx4qn7pgsaby8damxcfq5xr3iksqhdwb"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; - TENxVisiumData = derive2 { name="TENxVisiumData"; version="1.10.0"; sha256="0yi7axdam9b0ps0818cgygbmjcdknn032bm2snb6xf3g4i8n45f4"; depends=[ExperimentHub SpatialExperiment]; }; - TMExplorer = derive2 { name="TMExplorer"; version="1.12.0"; sha256="0vi99vpbfzwwqpdxgjlhcr835nnbfngwz6fag9kvd7ndicb21zy4"; depends=[BiocFileCache Matrix SingleCellExperiment]; }; - TabulaMurisData = derive2 { name="TabulaMurisData"; version="1.20.0"; sha256="1p0pyvgwzbnkx1687n2j7gxjzb5s49r1njklsff0di66m8nlis7k"; depends=[ExperimentHub]; }; - TabulaMurisSenisData = derive2 { name="TabulaMurisSenisData"; version="1.8.0"; sha256="0f6gj56rgcv378ry4h1sgm3zhv083yh23qf1pj9rvabwhdfgk8p1"; depends=[AnnotationHub ExperimentHub gdata HDF5Array SingleCellExperiment SummarizedExperiment]; }; - TargetScoreData = derive2 { name="TargetScoreData"; version="1.38.0"; sha256="19s1jxrh04gfkx7a9h59v6vl063wlf2j71bi6lxq9lm689y23z4k"; depends=[]; }; - TargetSearchData = derive2 { name="TargetSearchData"; version="1.40.0"; sha256="12z820mwi779dlmg5hf1cq5gpvrxg9ijb38s43fbzzgagn25czff"; depends=[]; }; - TimerQuant = derive2 { name="TimerQuant"; version="1.32.0"; sha256="18jl2x9ywfwm4ir2kwa9y4fq0lsz0295lx7f7qz08l4d1yrb1w4v"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; }; - TumourMethData = derive2 { name="TumourMethData"; version="1.0.0"; sha256="100kw4552rc48sqpw9makyf9nwgrs049hkvbrd8zjmrf542cj9md"; depends=[ExperimentHub GenomicRanges HDF5Array R_utils rhdf5 SummarizedExperiment]; }; - VariantToolsData = derive2 { name="VariantToolsData"; version="1.26.0"; sha256="0jj8wp2mp0xgd4hixyb59bykxbbpklncjj39ra5nyw4h4ziwrbfm"; depends=[BiocGenerics GenomicRanges VariantAnnotation]; }; - VectraPolarisData = derive2 { name="VectraPolarisData"; version="1.6.0"; sha256="0zr94qgyj365sy7cyzjsm9zbxyv6zbd8lwfr1nqz0p6f6hb9b8qw"; depends=[ExperimentHub SpatialExperiment]; }; - WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.34.0"; sha256="1p8z4p1s5l4hlp78ifiy3gan1n8iljaafbqv88vxwbjh2x9gfnjl"; depends=[]; }; - WGSmapp = derive2 { name="WGSmapp"; version="1.14.0"; sha256="0yv323mkv681f20dzjh1xaz19xbn4j777xxlmq27rvmk3j1vfah9"; depends=[GenomicRanges]; }; - WeberDivechaLCdata = derive2 { name="WeberDivechaLCdata"; version="1.4.1"; sha256="00ws47shsfnwi6c3ah56bm6dvicfhfr50jadll613fddv7cxkfsw"; depends=[ExperimentHub SingleCellExperiment SpatialExperiment]; }; - XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.40.0"; sha256="1qzbsmqn9y1483108pzh8zkiw1q1xzghincrcmz8cl2a4q10hyxf"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; }; - adductData = derive2 { name="adductData"; version="1.18.0"; sha256="16c79wy55p4ryglxph80dibfm1ni8c5yfk6fnmq064ihw4zwcld5"; depends=[AnnotationHub ExperimentHub]; }; - affycompData = derive2 { name="affycompData"; version="1.40.0"; sha256="183wgbc4j7f9d4rwr9smndnmw1i390abak23wp6p02zk340qmvq4"; depends=[affycomp Biobase]; }; - affydata = derive2 { name="affydata"; version="1.50.0"; sha256="1p9gqv8xnakwhf4sani09krlrq6qs4gr8yfjmi8g3s1zq4d32h1k"; depends=[affy]; }; - airway = derive2 { name="airway"; version="1.22.0"; sha256="1xs5bw6azvcdwh9325alndzrp82alxxqwpkf60zsk2q7lv43nwbr"; depends=[SummarizedExperiment]; }; - antiProfilesData = derive2 { name="antiProfilesData"; version="1.38.0"; sha256="0nbg37w6ij9vpj0mrbsx35naqv48kg8kkfl3x39ycbl860mrbr0b"; depends=[Biobase]; }; - aracne_networks = derive2 { name="aracne.networks"; version="1.28.0"; sha256="16gy79hgy07kynjf2s1lrh6a86brhz1caylginmkw547hal43nvf"; depends=[viper]; }; - bcellViper = derive2 { name="bcellViper"; version="1.38.0"; sha256="1q9ig5z03flq57nrhwnk6gdz4kamjmpwdfifwvnhac3l3f5z828h"; depends=[Biobase]; }; - beadarrayExampleData = derive2 { name="beadarrayExampleData"; version="1.40.0"; sha256="1mb821p4hf9fmj0f7s0rxwbxv8kb5ln0x2gfnydg4jnyz7k9w5p8"; depends=[beadarray Biobase]; }; - benchmarkfdrData2019 = derive2 { name="benchmarkfdrData2019"; version="1.16.0"; sha256="1p441c08bxx81z556n5wrzxkbq5g4lrwkp1wk7jh6zk6qs3jqg96"; depends=[ExperimentHub SummarizedExperiment]; }; - beta7 = derive2 { name="beta7"; version="1.40.0"; sha256="1q77pmvjnwyi0hm0dmi45a5fcj1phhz9r2fvz4vnmq5b632zp30v"; depends=[marray]; }; - biotmleData = derive2 { name="biotmleData"; version="1.26.0"; sha256="06lnkwqzsk4v241309w174ia6x8iksh7rvk3z8l0xr6hf31sg5gw"; depends=[]; }; - biscuiteerData = derive2 { name="biscuiteerData"; version="1.16.0"; sha256="1wqdj1499psnf9y816k05m6h38yfsin4rwzqm1209ddxza6jbw1x"; depends=[AnnotationHub curl ExperimentHub GenomicRanges]; }; - bladderbatch = derive2 { name="bladderbatch"; version="1.40.0"; sha256="19dgvdbxsswy1fl68wwf4ifplppm1blzjw1dr06mz0yjq80a7rvl"; depends=[Biobase]; }; - blimaTestingData = derive2 { name="blimaTestingData"; version="1.22.0"; sha256="14rlw5xxgbybsrzmzncqwzkc617gfays5z8x6ifigfdlrp5h1rpl"; depends=[]; }; - bodymapRat = derive2 { name="bodymapRat"; version="1.18.0"; sha256="1sfq6vxkb68l0q5qbnpm3fi53k4q9a890bv2ff9c6clhc42wx3h6"; depends=[ExperimentHub SummarizedExperiment]; }; - breakpointRdata = derive2 { name="breakpointRdata"; version="1.20.0"; sha256="13w9vp436akpnywhsr6kz763c2yakrvpyiplggfb6w50wi2xm5xj"; depends=[]; }; - breastCancerMAINZ = derive2 { name="breastCancerMAINZ"; version="1.40.0"; sha256="1nbvacb04ka0p88hailawz0i4472gaagxy0yw9qg83f9da1dzm4l"; depends=[]; }; - breastCancerNKI = derive2 { name="breastCancerNKI"; version="1.40.0"; sha256="0q3lvq447jw3ny2896mz009x0ijdxgy4xgk4y00sv9nsbwic1ais"; depends=[]; }; - breastCancerTRANSBIG = derive2 { name="breastCancerTRANSBIG"; version="1.40.0"; sha256="03q9y9cbipp8a275hcw5yzwx7l5qrc6fqzdy8vy7z5ij825ygnad"; depends=[]; }; - breastCancerUNT = derive2 { name="breastCancerUNT"; version="1.40.0"; sha256="0p11hll0pjzycgqbjhcn06vcah7kfvxbzsrqvbwglajs0b5m6dra"; depends=[]; }; - breastCancerUPP = derive2 { name="breastCancerUPP"; version="1.40.0"; sha256="0mi9dqbx7fyrxmc4l12c0x6i865f5691f94wzw88q2hwzzz80n6p"; depends=[]; }; - breastCancerVDX = derive2 { name="breastCancerVDX"; version="1.40.0"; sha256="12r8zql30ssr0cxy8v1qawwsky54321c737ny19n2yrl7sm08gf0"; depends=[]; }; - brgedata = derive2 { name="brgedata"; version="1.24.0"; sha256="0nplh5km45hdb001mc86fh9yyj56mfvcr2g0zffq0nbjlpvspz0i"; depends=[Biobase SummarizedExperiment]; }; - bronchialIL13 = derive2 { name="bronchialIL13"; version="1.40.0"; sha256="110791bhnpzadc2ja8i59bix42ficqxqw3il8hnqb38i7c43w0zw"; depends=[affy]; }; - bsseqData = derive2 { name="bsseqData"; version="0.40.0"; sha256="15fyv6l6bsa4fk4qxpfgxgw5aq1dd3pry84zapklijxm24g6yl6j"; depends=[bsseq]; }; - cMap2data = derive2 { name="cMap2data"; version="1.38.0"; sha256="1d2yv9gq3w1b50f602ajbdqky5vwsh19qqg8a3czlphghrjrlfwd"; depends=[]; }; - cancerdata = derive2 { name="cancerdata"; version="1.40.0"; sha256="1670df52ainxq220vzblrv2jml2bql8vid09b51dzhjhikwzxhs4"; depends=[Biobase]; }; - ccTutorial = derive2 { name="ccTutorial"; version="1.40.0"; sha256="1rqblyk7389xqwzvib2xjyjrc8l3qd2g8z9vj96mrfyr8dpccjjs"; depends=[affy Biobase Ringo topGO]; }; - ccdata = derive2 { name="ccdata"; version="1.28.0"; sha256="1vskwqb0n3qfgmakc8zlvfkag653gkz3l9j8lqnhxbbnnads738j"; depends=[]; }; - celarefData = derive2 { name="celarefData"; version="1.20.0"; sha256="11vx5hmbjsfzyxgb8qzhy3f54krcp33h8ki61irxxl06q2n59928"; depends=[]; }; - celldex = derive2 { name="celldex"; version="1.12.0"; sha256="1ckjdmiw9g1wdswijy3dvamv3kqi11j8b8p9dgr1yv5q2lfjbnwl"; depends=[AnnotationDbi AnnotationHub DelayedArray DelayedMatrixStats ExperimentHub S4Vectors SummarizedExperiment]; }; - cfToolsData = derive2 { name="cfToolsData"; version="1.0.0"; sha256="0icr4llq99ghyvi8nsdfnp5sydh8icr23y8ar7jg0qpwiagdl3l9"; depends=[ExperimentHub]; }; - chipenrich_data = derive2 { name="chipenrich.data"; version="2.26.0"; sha256="0hfisbzbhz501dvcwvx3cnag9643ydw6f0q122w7mrnzsag82013"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicRanges IRanges readr rtracklayer S4Vectors]; }; - chipseqDBData = derive2 { name="chipseqDBData"; version="1.18.0"; sha256="114645f6db8pp263g6h2gb2cwhdgqh8risssq2vfzzdv16qqw640"; depends=[AnnotationHub ExperimentHub Rsamtools S4Vectors]; }; - chromstaRData = derive2 { name="chromstaRData"; version="1.28.0"; sha256="13xrdr9xrfysh714q4p00pgvwr6ryhvd3jinfqr1gb27s7bdvsi6"; depends=[]; }; - clustifyrdatahub = derive2 { name="clustifyrdatahub"; version="1.12.0"; sha256="004g6s917ayxiixlc8zp4h7zai9amcm6bllr9mz5j9sgm8kd8px4"; depends=[ExperimentHub]; }; - cnvGSAdata = derive2 { name="cnvGSAdata"; version="1.38.0"; sha256="1aask6cx972qw62p2p16n1sk0rjmrr9hhqlaaab52rn4lfdiaba2"; depends=[cnvGSA]; }; - colonCA = derive2 { name="colonCA"; version="1.44.0"; sha256="0qkjmbyh5hwfjw657qam7xpjnym4qqbv1292fbqzwdyr0019jpfn"; depends=[Biobase]; }; - crisprScoreData = derive2 { name="crisprScoreData"; version="1.6.0"; sha256="0rrwsfp8m8z389yfr8ls6wkz7faa2iz8pnljl2776qa3zgsfmhni"; depends=[AnnotationHub ExperimentHub]; }; - curatedAdipoArray = derive2 { name="curatedAdipoArray"; version="1.14.0"; sha256="06dcb58i86gg4ar3hyh5w8kdqd0rf1ps7l021nfwklzm622b4wzc"; depends=[]; }; - curatedAdipoChIP = derive2 { name="curatedAdipoChIP"; version="1.18.0"; sha256="16g8k2cvi890b9j30yzm7lxnxljl2k4x1yxvd8cg1ba94vzimw6k"; depends=[ExperimentHub SummarizedExperiment]; }; - curatedAdipoRNA = derive2 { name="curatedAdipoRNA"; version="1.18.0"; sha256="1dy58ppw1ck89p036y6iml9210hv7f4zvsm0wi5m13b4ij7a749p"; depends=[SummarizedExperiment]; }; - curatedBladderData = derive2 { name="curatedBladderData"; version="1.38.0"; sha256="1i9hbm8gh9f09fzyjga7rjps7hlbsivnnbpk8fgb0838msjq5bl2"; depends=[affy]; }; - curatedBreastData = derive2 { name="curatedBreastData"; version="2.30.0"; sha256="127kjiqb2laz77cx9lr0rs43kgwxyi52rd7ivhfpcxhivsg4hcsr"; depends=[Biobase BiocStyle ggplot2 impute XML]; }; - curatedCRCData = derive2 { name="curatedCRCData"; version="2.34.0"; sha256="1dqcdpzls41adih54wfpcb36mpysw0za14pz4wsjwisqnjwzpxvn"; depends=[BiocGenerics nlme]; }; - curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="3.10.0"; sha256="0fgvpxc1878lm8l0bib12zzwrgsap0vw4zn77qpz1mljnz43shcb"; depends=[AnnotationHub dplyr ExperimentHub magrittr mia purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect TreeSummarizedExperiment]; }; - curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.40.1"; sha256="18163l0g3g042m2qgz143smxia3lp8v7rddkqmkg4hzns7baxfaa"; depends=[Biobase BiocGenerics]; }; - curatedTBData = derive2 { name="curatedTBData"; version="1.8.0"; sha256="116ck61pw6diili326x0x8p7f8d5w624n4w3pd212vhq8555yrqs"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment rlang]; }; - curatedTCGAData = derive2 { name="curatedTCGAData"; version="1.24.1"; sha256="0hr66p8l54nzfsizcxxd2njy44xnia607wvfhrgv46f3f8s95z02"; depends=[AnnotationHub ExperimentHub HDF5Array MultiAssayExperiment S4Vectors SummarizedExperiment]; }; - davidTiling = derive2 { name="davidTiling"; version="1.42.0"; sha256="1xfkyncwi9zrynk6dqsmacmkxx2qvj1axda3wn55b1vbw2wimpyf"; depends=[Biobase GO_db tilingArray]; }; - depmap = derive2 { name="depmap"; version="1.16.0"; sha256="1vb3f5ar2jlkjyhp7rv4imlylinm6fi94ki277jgdaxn12v78qxj"; depends=[AnnotationHub dplyr ExperimentHub]; }; - derfinderData = derive2 { name="derfinderData"; version="2.20.0"; sha256="1h8rl8mnxk2lsl8xa8mihvbd77yw32fpxdbhhn4rv1v8i5j35r7l"; depends=[]; }; - diffloopdata = derive2 { name="diffloopdata"; version="1.30.0"; sha256="1f0gnwpjxkby7kd2bphnz4lv7gx9k297yqz0b954m7adp1sh6aqa"; depends=[]; }; - diggitdata = derive2 { name="diggitdata"; version="1.34.0"; sha256="01r356zdy4pi8z90pbww8q7dfmq09zf148d5sq3w22z1ypsy6zm1"; depends=[Biobase viper]; }; - dorothea = derive2 { name="dorothea"; version="1.14.1"; sha256="0bjmnqly57y69axnz5q2rqz7j7dnz1xzbhbzcalv99kybjiyqyb5"; depends=[bcellViper decoupleR dplyr magrittr]; }; - dressCheck = derive2 { name="dressCheck"; version="0.40.0"; sha256="1mb6cmyf61rb7jdwczhzcvadgqijij53w03d87xq7zqsc7jxi9z3"; depends=[Biobase]; }; - dyebiasexamples = derive2 { name="dyebiasexamples"; version="1.42.0"; sha256="06sp4fxsph3w84g960s65sy1vc032p2xj3sf0v94nh78f6myg0mj"; depends=[GEOquery marray]; }; - easierData = derive2 { name="easierData"; version="1.8.0"; sha256="138x8i1zd4cvlawg9pa5ia1kmmdaxm0g9lkivzxl077s9vlpjp8d"; depends=[AnnotationHub ExperimentHub SummarizedExperiment]; }; - ecoliLeucine = derive2 { name="ecoliLeucine"; version="1.42.0"; sha256="02v2hv8qcwdi2z531xqvnfdymzmd5qqp868arg5r0zcrzj5kkiaw"; depends=[affy ecolicdf]; }; - emtdata = derive2 { name="emtdata"; version="1.10.0"; sha256="0fjqmg9w7c1lv0b0ldr26rxsly78sw2asj3hw8h8yd623g7bkddw"; depends=[edgeR ExperimentHub SummarizedExperiment]; }; - epimutacionsData = derive2 { name="epimutacionsData"; version="1.6.0"; sha256="1gbh1ad0kqdmyrnmvrw5lbxlafvq12gqmbw9w3bxi7q1ahclh4yh"; depends=[]; }; - estrogen = derive2 { name="estrogen"; version="1.48.0"; sha256="0nbyg1pj7vqxaxgznkhz2v14cq42gg8jkn5mbkd3nrz86slzkblm"; depends=[]; }; - etec16s = derive2 { name="etec16s"; version="1.30.0"; sha256="1amhmhl74fyfvh4w1a0r0g7ahqm5yq16i87s4mzwvc03vslps143"; depends=[Biobase metagenomeSeq]; }; - ewceData = derive2 { name="ewceData"; version="1.10.0"; sha256="1kgh5r0pplvblrrkf1qxg7c92psrwm2bjpbs30dp8mdsnjdahm9v"; depends=[ExperimentHub]; }; - faahKO = derive2 { name="faahKO"; version="1.42.0"; sha256="0m3m9382b463wbl5hrzh04lp8h052gka8b7q69s740hlb91npjx7"; depends=[xcms]; }; - fabiaData = derive2 { name="fabiaData"; version="1.40.0"; sha256="0alh11k7vj6ripj2017j6afa8wjb4xb03zfvrh10svsrr0a7qldv"; depends=[Biobase]; }; - ffpeExampleData = derive2 { name="ffpeExampleData"; version="1.40.0"; sha256="16bxp2x0n77hzlf6m871wgprrhkydcbbnw88jp8nb7d0fl1vhxyr"; depends=[lumi]; }; - fibroEset = derive2 { name="fibroEset"; version="1.44.0"; sha256="17dzp6gjfgsnvwplk3inf7s491brf1pnn1bq1a195s8m0r5kd946"; depends=[Biobase]; }; - fission = derive2 { name="fission"; version="1.22.0"; sha256="0y07zj5iw6fmr397xkxijgfy8mmv1k42mqjfpmv01kb0hzayjj8n"; depends=[SummarizedExperiment]; }; - flowPloidyData = derive2 { name="flowPloidyData"; version="1.28.0"; sha256="1r3w88d20jipmj7gchv0mmw9rbziq0s7vyvi5isc4lp59hc6m9h1"; depends=[]; }; - flowWorkspaceData = derive2 { name="flowWorkspaceData"; version="3.14.0"; sha256="0wm0s1839c14b2y05b8nini2aqp39vl7ycsp1nz1y2amxirdfpyq"; depends=[]; }; - fourDNData = derive2 { name="fourDNData"; version="1.2.0"; sha256="06dzm57f56y396py2mmfzls9yypkxzj032hpba8srq263zqpi9z0"; depends=[BiocFileCache GenomicRanges HiCExperiment IRanges S4Vectors]; }; - frmaExampleData = derive2 { name="frmaExampleData"; version="1.38.0"; sha256="0sdh0ijkpni4xk07dyvkckr6k0dha6zbciggxaki61j99fs5nwsv"; depends=[]; }; - furrowSeg = derive2 { name="furrowSeg"; version="1.30.0"; sha256="0vvr9x50yw7h5qcgcva2505cgqk276ci7yfbzvizn3mq4n2r3n3j"; depends=[abind dplyr EBImage locfit tiff]; }; - gDNAinRNAseqData = derive2 { name="gDNAinRNAseqData"; version="1.2.0"; sha256="13v14dhwb1mkpxc5z08amqajhkncrkl38k4js48bp36s8lzb0zw8"; depends=[BiocGenerics ExperimentHub RCurl Rsamtools XML]; }; - gDRtestData = derive2 { name="gDRtestData"; version="1.0.0"; sha256="0pwrypvc1hvrcd6dckiid5vjpwpcbw3vg61s88mms3kjs8163c0r"; depends=[checkmate]; }; - gageData = derive2 { name="gageData"; version="2.40.0"; sha256="13g8hzkh34c0my75xnxdffa1d67xvn9hn592s25m18400lgsfif0"; depends=[]; }; - gaschYHS = derive2 { name="gaschYHS"; version="1.40.0"; sha256="08dgm24ycsldp6pjqhflpxqm91yqp199n2j1fg9m4wrgbyakypkm"; depends=[Biobase]; }; - gcspikelite = derive2 { name="gcspikelite"; version="1.40.0"; sha256="1yfmp96k1iy6sjyafs2sflflnmnq4czkjba61vzxb4alirra9jf5"; depends=[]; }; - geneLenDataBase = derive2 { name="geneLenDataBase"; version="1.38.0"; sha256="0skycixz0qbm8cs10kgrkl1ab1qh0mz8641mf5194y839m81d060"; depends=[GenomicFeatures rtracklayer]; }; - genomationData = derive2 { name="genomationData"; version="1.34.0"; sha256="044q01dbcd34lxgwpg76yk0msvx7gpiibiqxp6fr9jswq6izrzq7"; depends=[]; }; - golubEsets = derive2 { name="golubEsets"; version="1.44.0"; sha256="1rwhb48wz20i06whxdj1cb6qjda545w4050y87c55h3xqcair3ya"; depends=[Biobase]; }; - gpaExample = derive2 { name="gpaExample"; version="1.14.0"; sha256="0danfxw9jqlv9862pcf7sdaxnwxrpgs9gy38xpjzx3q25y4y1589"; depends=[]; }; - grndata = derive2 { name="grndata"; version="1.34.0"; sha256="17g2jp99dl6kypzz4v2pf0h29vx16pwfw6apbhgggv1had9593nm"; depends=[]; }; - h5vcData = derive2 { name="h5vcData"; version="2.22.0"; sha256="0pflrqg6yaiw7w9b8wazf74sdgx1fqgd0iz9cdq0bx4jnra5f0gz"; depends=[]; }; - hapmap100khind = derive2 { name="hapmap100khind"; version="1.44.0"; sha256="1qzvf4g8rd85g3qxx5gckx4w1v258h9jd9dfcxbn39ghamqhy9yb"; depends=[]; }; - hapmap100kxba = derive2 { name="hapmap100kxba"; version="1.44.0"; sha256="0743byawrk3azgrb1wdb16khd2pl887fxf4r7mf6zm08lgjyr3vv"; depends=[]; }; - hapmap500knsp = derive2 { name="hapmap500knsp"; version="1.44.0"; sha256="1kla7h8hv6kyc9v6ra5scg3f1dlmw160wl5c1vqq9b6irqmrah6l"; depends=[]; }; - hapmap500ksty = derive2 { name="hapmap500ksty"; version="1.44.0"; sha256="0g13vk2gnnmpm21fngr7cfhry3sacxmbxsym5wz4sibfv3d72n7r"; depends=[]; }; - hapmapsnp5 = derive2 { name="hapmapsnp5"; version="1.44.0"; sha256="1486k3dlnvadxl8qphzria3qrw91x8j0b3k4di8c8s0fjkrfdh33"; depends=[]; }; - hapmapsnp6 = derive2 { name="hapmapsnp6"; version="1.44.0"; sha256="1dx59dsm4pmca9xf5c2abk5clmczx2wh6j47xx8h064x3n5s611n"; depends=[]; }; - harbChIP = derive2 { name="harbChIP"; version="1.40.0"; sha256="0xb553h6ffnik8c299h5imaabb2ca0fkqk0hrbs1a1acg11xqs32"; depends=[Biobase Biostrings IRanges]; }; - healthyControlsPresenceChecker = derive2 { name="healthyControlsPresenceChecker"; version="1.6.0"; sha256="127p0wwqf0dx9c8y3rjmsw6nl9rczr72zn8dsqf92mdj13qpxi2m"; depends=[geneExpressionFromGEO GEOquery magrittr xml2]; }; - healthyFlowData = derive2 { name="healthyFlowData"; version="1.40.0"; sha256="1w96g3m8kniz4nil682hz55pxhxgaqfgmfii990mrd0smirnckwx"; depends=[flowCore]; }; - hgu133abarcodevecs = derive2 { name="hgu133abarcodevecs"; version="1.40.0"; sha256="1v8ssmzad3a1wwwh2rw9pkrcwjbbv9m2i5iqjsn0qmi7s9xpdn2z"; depends=[]; }; - hgu133plus2CellScore = derive2 { name="hgu133plus2CellScore"; version="1.22.0"; sha256="08d6p5zmf674hj6qy6sz8n9fg70xr83y21d7ln22i9gzvvgbazpi"; depends=[Biobase]; }; - hgu133plus2barcodevecs = derive2 { name="hgu133plus2barcodevecs"; version="1.40.0"; sha256="1c3432d28n4bj363s7h493izz865i2gfrs8x2fr6n2js9p4bz8bf"; depends=[]; }; - hgu2beta7 = derive2 { name="hgu2beta7"; version="1.42.0"; sha256="1xxwj4d760y6ymw2ag5xqd212yb7wns2yaxgla62v3pcalvdccfp"; depends=[]; }; - humanStemCell = derive2 { name="humanStemCell"; version="0.42.0"; sha256="0bywcagkg17gdcwbbw68fla1481llz96bhr3apbymvk8m4vbhlp0"; depends=[Biobase hgu133plus2_db]; }; - imcdatasets = derive2 { name="imcdatasets"; version="1.10.0"; sha256="0yvii8qxgxabf9i2z5pz37dn9s6vw3g6z2k6c5k4rjns8wmvixps"; depends=[cytomapper DelayedArray ExperimentHub HDF5Array S4Vectors SingleCellExperiment SpatialExperiment]; }; - kidpack = derive2 { name="kidpack"; version="1.44.0"; sha256="15c7ahrpjapqp90nanpkjb9hbcv42a84xg939fgpzkpgc7ch0m9k"; depends=[Biobase]; }; - leeBamViews = derive2 { name="leeBamViews"; version="1.38.0"; sha256="0j7q5slcb59z6vf2z123h9ld0gaazsiih7an603id1bqjprkd74b"; depends=[Biobase BSgenome GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; }; - leukemiasEset = derive2 { name="leukemiasEset"; version="1.38.0"; sha256="1srwn3sy929hskka9gfnqpjrh8xy0pz76ihq4amq8wbdawh1zv8b"; depends=[Biobase]; }; - lumiBarnes = derive2 { name="lumiBarnes"; version="1.42.0"; sha256="1c27s7ajkmygfmd2g6dpsamwcm87xlxgr31wyn6g1rb7zw2zdpy2"; depends=[Biobase lumi]; }; - lungExpression = derive2 { name="lungExpression"; version="0.40.0"; sha256="1kzf8lsl9sh0ikn9zx5sfj5z7ld94xldhmj7awvgp0bsbqlra2qc"; depends=[Biobase]; }; - lydata = derive2 { name="lydata"; version="1.28.0"; sha256="0gwaiq16q1kfx533hymqnh6zk9nimljdbidvzb23bykj99kmsiqr"; depends=[]; }; - mAPKLData = derive2 { name="mAPKLData"; version="1.34.0"; sha256="0vhysi7wyw7d3vbq4qcq3i3ic953awppg2bix40ywz1459b5p43g"; depends=[]; }; - mCSEAdata = derive2 { name="mCSEAdata"; version="1.22.0"; sha256="0la86384k9f0r8mgh6an023bx1sjklglgm9rwzg33hcc58lb02ki"; depends=[GenomicRanges]; }; - macrophage = derive2 { name="macrophage"; version="1.18.0"; sha256="10d69v34fhxfy4nhw8h50j4q5kblm032cmjnparxm5gm7ksiqwxy"; depends=[]; }; - mammaPrintData = derive2 { name="mammaPrintData"; version="1.38.0"; sha256="0bm1lfdjhav34rqvkvygkllmwibjh0f34p58vml3ljjdhgghawrq"; depends=[]; }; - maqcExpression4plex = derive2 { name="maqcExpression4plex"; version="1.46.0"; sha256="0ihwmzndj3yxs75x3h9w03ydvy08hmi0pzy561mjsyhdrrb8i4dc"; depends=[]; }; - marinerData = derive2 { name="marinerData"; version="1.2.0"; sha256="00m1r6ijhykq96d86h17asngdm8a1ss2213nd6n6lsj4dshr74a0"; depends=[ExperimentHub]; }; - mcsurvdata = derive2 { name="mcsurvdata"; version="1.20.0"; sha256="06k500vivc8anxv1x639acjv55w5r6pc2ghmszkh42h1q7a27r68"; depends=[AnnotationHub Biobase ExperimentHub]; }; - metaMSdata = derive2 { name="metaMSdata"; version="1.38.0"; sha256="18gixjk80zzvjg39av6rhbl9zpvnx09fd6gcbnsjxag7vmk88d1d"; depends=[]; }; - methylclockData = derive2 { name="methylclockData"; version="1.10.0"; sha256="0q4hiclws0fg03kwvbdwka024gghl1hbmmfficxfghslll78mc3y"; depends=[ExperimentHub ExperimentHubData]; }; - miRNATarget = derive2 { name="miRNATarget"; version="1.40.0"; sha256="0qlazpmar9wi0gbh2qpkz8f44vzzg79iia1sgry42xbykx7bzx0y"; depends=[Biobase]; }; - miRcompData = derive2 { name="miRcompData"; version="1.32.0"; sha256="15w8vldxp5wp0vqfy3k7s8imjvmdaibgiw0p2li5sx2j0g6i27g6"; depends=[]; }; - microRNAome = derive2 { name="microRNAome"; version="1.24.0"; sha256="09b0260qxdhx7sax1xmg8nz8mf0nv4yh70ibd8cyxj8fpnzifnhh"; depends=[SummarizedExperiment]; }; - microbiomeDataSets = derive2 { name="microbiomeDataSets"; version="1.10.0"; sha256="1i118r0wfq2y57h3m1l3nzhrixmkq0dsc1dfkbfi83xl29ijhjn9"; depends=[ape BiocGenerics Biostrings ExperimentHub MultiAssayExperiment SummarizedExperiment TreeSummarizedExperiment]; }; - minfiData = derive2 { name="minfiData"; version="0.48.0"; sha256="12lhyv3zb8vps7v61zfm8sz4r18rpgphgy7nvdpj48dj3awdnpw8"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; }; - minfiDataEPIC = derive2 { name="minfiDataEPIC"; version="1.28.0"; sha256="1m2wl7x48rjjl3sh8r42wmw761r55821jjvbxjs7lycbmgd162ph"; depends=[IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest minfi]; }; - minionSummaryData = derive2 { name="minionSummaryData"; version="1.32.0"; sha256="1pkg77i5xi96yqn7i3xchwknh5lii35hyms8rjqqzamjr7g16ifs"; depends=[]; }; - mosaicsExample = derive2 { name="mosaicsExample"; version="1.40.0"; sha256="02x97k7s5l3ca1xws4xplmc3x14wjy0rx1kl5jmy59ncc2lwik4r"; depends=[]; }; - mouse4302barcodevecs = derive2 { name="mouse4302barcodevecs"; version="1.40.0"; sha256="1l2blxqsxy27lkrgd08r6a3j8va54hzhl5lx0i9bxpj1i9xiwkr6"; depends=[]; }; - msPurityData = derive2 { name="msPurityData"; version="1.30.0"; sha256="1gf28bcj65vyvghdd2vqj3zsymw2y4jk8dhhkhh6ps18qh149ca0"; depends=[]; }; - msd16s = derive2 { name="msd16s"; version="1.22.0"; sha256="0s7bbcxgly2xr21dkf88hpby5b4lhwy18jyji88dhqqq4jpbc8dk"; depends=[Biobase metagenomeSeq]; }; - msdata = derive2 { name="msdata"; version="0.42.0"; sha256="1jm1zjqzkd0vy8ww0k0y1fgs6i9vkg7ir6dyga001n170g11vfzr"; depends=[]; }; - msigdb = derive2 { name="msigdb"; version="1.10.0"; sha256="1fzgq31n059zhlkny3rfwfnriz81q9brk14r5yx2zhizlv8jcais"; depends=[AnnotationDbi AnnotationHub ExperimentHub GSEABase org_Hs_eg_db org_Mm_eg_db]; }; - msqc1 = derive2 { name="msqc1"; version="1.30.0"; sha256="1s6wfmrss67qz8lsiqbm3bsvw3zm9pczv0w6712dd2bd2mf2lirg"; depends=[lattice]; }; - mtbls2 = derive2 { name="mtbls2"; version="1.32.0"; sha256="1z4n5bykfk02b6gscwygy4r99fjk9cmiv8fzp2996q4mhzr7dh6c"; depends=[]; }; - muscData = derive2 { name="muscData"; version="1.16.0"; sha256="01jmd59zk4fkny984wv9iwd9bq56cq4mnqz1x9wcjkmgk5bnvwxa"; depends=[ExperimentHub SingleCellExperiment]; }; - mvoutData = derive2 { name="mvoutData"; version="1.38.0"; sha256="17rbb19wv8dzgkrkhgabm3fgr3l2gzvjl34ichlcfalaa17wci3w"; depends=[affy Biobase lumi]; }; - nanotubes = derive2 { name="nanotubes"; version="1.18.0"; sha256="0ah7y051mk6pl96y6h9qlxk4gg2a7al8j9ccwk0fjl7v5fa1daya"; depends=[]; }; - nullrangesData = derive2 { name="nullrangesData"; version="1.8.0"; sha256="0dd9d07z2k3n34wi5mynyghc0bsmyn5fhl0510ij7zbd58i520xy"; depends=[ExperimentHub GenomicRanges InteractionSet]; }; - oct4 = derive2 { name="oct4"; version="1.18.0"; sha256="1kbv532sav3a0s1893hxjw7pf25lhff5kxnraq6h7h7vqqmim93j"; depends=[]; }; - octad_db = derive2 { name="octad.db"; version="1.4.0"; sha256="03dih6cc71aj31l9s982qpdsyy51q83inykyz4a8pk81x3pld2n9"; depends=[ExperimentHub]; }; - optimalFlowData = derive2 { name="optimalFlowData"; version="1.14.0"; sha256="0agaavlhsv1zk3xdwncn4nkz7q80bjnsg32msnnj8x79925hfgwq"; depends=[]; }; - orthosData = derive2 { name="orthosData"; version="1.0.0"; sha256="0n9vkvfxah29cjfwnxjqw0kf5kdgjvx9394kgilnbskys95fh6v3"; depends=[AnnotationHub BiocFileCache ExperimentHub HDF5Array stringr SummarizedExperiment]; }; - pRolocdata = derive2 { name="pRolocdata"; version="1.40.0"; sha256="0zjys778k9xydd6r1nvklz324mq688472b8i8d1nm8ayb880bi7i"; depends=[Biobase MSnbase]; }; - parathyroidSE = derive2 { name="parathyroidSE"; version="1.40.0"; sha256="0lv7wlbdi05a3l4pv8x4cnc6jzqk1gb82rpmj1cv0nsq7gqhqscv"; depends=[SummarizedExperiment]; }; - pasilla = derive2 { name="pasilla"; version="1.30.0"; sha256="0dga4bb7qjigy1m1yp4bs4frwynjqfy3dnnylx4maai9x2zlynd0"; depends=[DEXSeq]; }; - pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.40.0"; sha256="1lr7dn9s7i287k602xa1zyx5xs6wa3g58kmpamc3hcsi5nn1iv7x"; depends=[]; }; - pcxnData = derive2 { name="pcxnData"; version="2.24.0"; sha256="0mhqgii84ncx2na49h3qvciqz7jfbbgil12i2cb4snlmxpa66k0j"; depends=[]; }; - pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.40.0"; sha256="03yvz9z4dmnm4cvfwkw3b7srmq7hmwk9y21lpsn5yz01wjp9wf6w"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pepDat = derive2 { name="pepDat"; version="1.22.0"; sha256="0ks5lxfwwgxfv0ls42fr5hj0iq2m6ylv13ybp8gq5r24p6hyigq3"; depends=[GenomicRanges]; }; - plotgardenerData = derive2 { name="plotgardenerData"; version="1.8.0"; sha256="1c8004k5kqx1lryc7x57xvlqic7km11r2b723r5ar1x5mghl9lr3"; depends=[]; }; - prebsdata = derive2 { name="prebsdata"; version="1.38.0"; sha256="1jszgh5sq0fls0484zfy41cpxwfg04pky54ma2r8v0x2aksb9fnv"; depends=[]; }; - preciseTADhub = derive2 { name="preciseTADhub"; version="1.10.0"; sha256="006kdb7rv63jyn4xnvrk13s5by1m85jgnfs2594h51af4sgyd2id"; depends=[ExperimentHub]; }; - prostateCancerCamcap = derive2 { name="prostateCancerCamcap"; version="1.30.0"; sha256="1962yhm8j1mb3yvdkvdn8i35dmwj69larlp201vwqr8a25l67isq"; depends=[Biobase]; }; - prostateCancerGrasso = derive2 { name="prostateCancerGrasso"; version="1.30.0"; sha256="0mvlnfps3xa6039ysbp5hc8cy30masw9p1rhhms9f79m1xh3ldqr"; depends=[Biobase]; }; - prostateCancerStockholm = derive2 { name="prostateCancerStockholm"; version="1.30.0"; sha256="19dkx1brrwjcrjyfhajiazfpy853kmqr10npzkarnb1fw3dhn9a9"; depends=[Biobase]; }; - prostateCancerTaylor = derive2 { name="prostateCancerTaylor"; version="1.30.0"; sha256="0mccc3fwrnayjlpjyncizsrnnapgb7mhywvcdwlspp2ma0xzq2kw"; depends=[Biobase]; }; - prostateCancerVarambally = derive2 { name="prostateCancerVarambally"; version="1.30.0"; sha256="10irpxg5gfj10s310irjh1lacg05s6073vfqlv5jmpwgjjz8g84m"; depends=[Biobase]; }; - ptairData = derive2 { name="ptairData"; version="1.10.0"; sha256="11fxa0j4jl19ig21v00acbkapwi0y5d9n36q82pb8kz2krdaa9xc"; depends=[rhdf5 signal]; }; - pumadata = derive2 { name="pumadata"; version="2.38.0"; sha256="0rc2qda3s3326g1ymychhxa3c1vb16vj7sllfqymridqwm907k0x"; depends=[Biobase oligo puma]; }; - qPLEXdata = derive2 { name="qPLEXdata"; version="1.20.0"; sha256="0l6agwhqsm5z98j0hm1h7df6lrq7rgwch99a33532f5zmn6bq7xa"; depends=[dplyr knitr MSnbase qPLEXanalyzer]; }; - rRDPData = derive2 { name="rRDPData"; version="1.22.0"; sha256="18k925rd7yslvc6gl9gn9fk7672w57327rsybi5vpphvpyqsqls1"; depends=[rRDP]; }; - raerdata = derive2 { name="raerdata"; version="1.0.0"; sha256="0f8k9a714fc0wkrg2ja1193302q712aw6q4nv79qnvavqx12p0hi"; depends=[BiocGenerics ExperimentHub Rsamtools rtracklayer SingleCellExperiment]; }; - rcellminerData = derive2 { name="rcellminerData"; version="2.24.0"; sha256="0fmidhiqaf2vrhz6b5qr7bhisqnr3vff1aczp02qfhj5zyrf2vp6"; depends=[Biobase]; }; - restfulSEData = derive2 { name="restfulSEData"; version="1.24.0"; sha256="1ydi54mbvvsn73j955qjiqgpc2qvgdxfa9gsflx5cc14c0aqyb9h"; depends=[DelayedArray ExperimentHub HDF5Array SummarizedExperiment]; }; - rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.40.0"; sha256="0qaxxhn31kwny0327ki5yllp4cnljdqbqmrb0arx1qggbysb31gf"; depends=[]; }; - sampleClassifierData = derive2 { name="sampleClassifierData"; version="1.26.0"; sha256="0ir21cvcqq9xh43pidh4lrm1slzknsjm9lad3qhh7dn2x5dg8p7p"; depends=[SummarizedExperiment]; }; - scATAC_Explorer = derive2 { name="scATAC.Explorer"; version="1.8.0"; sha256="1qjacprh3q0g1fyq70akasfr66hxw2g8n1bwn4yhf798vly5ngf8"; depends=[BiocFileCache data_table Matrix S4Vectors SingleCellExperiment]; }; - scMultiome = derive2 { name="scMultiome"; version="1.2.0"; sha256="0j9cwlnj0078yyzfjiwsadx34g1ddcrfm5xmzjv59dmk55iy59d7"; depends=[AnnotationHub AzureStor checkmate DelayedArray ExperimentHub GenomicRanges HDF5Array MultiAssayExperiment rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scRNAseq = derive2 { name="scRNAseq"; version="2.16.0"; sha256="0dbh3sqq7lkkdf7vls5qg7fbn6y74c7hsigb4d69pvk934ll88aw"; depends=[AnnotationDbi AnnotationHub BiocGenerics ensembldb ExperimentHub GenomicFeatures GenomicRanges S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scTHI_data = derive2 { name="scTHI.data"; version="1.14.0"; sha256="1y28wldw2xln9bp4hgymjdlgz9fjiyhb56kac6z7aiy1pifavw48"; depends=[]; }; - scanMiRData = derive2 { name="scanMiRData"; version="1.8.0"; sha256="116v4l8rqg2lsadjhhhn40fdgfar6hbx5abri5kdq7bc5fagg957"; depends=[scanMiR]; }; - scpdata = derive2 { name="scpdata"; version="1.10.0"; sha256="0zwwbqss2a6vkzhz517j89gf02z4f5b9kx5wbnyi2g15ihwlvaxr"; depends=[AnnotationHub ExperimentHub QFeatures S4Vectors SingleCellExperiment]; }; - seq2pathway_data = derive2 { name="seq2pathway.data"; version="1.34.0"; sha256="0iaz4i5garvhai2bpwxm59h4qasbasv66a2b8mql2rqa4s6wnf0a"; depends=[]; }; - seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.38.0"; sha256="0kzmn5hx8ag02pz8b78cq7dbalw2w60y441cjyyvxjgycwcfvmvj"; depends=[]; }; - seqc = derive2 { name="seqc"; version="1.36.0"; sha256="0zxmh69v45ys1hv9kkr7g6v67npcip6s11r3am502zq1dnk7khg1"; depends=[Biobase]; }; - serumStimulation = derive2 { name="serumStimulation"; version="1.38.0"; sha256="0c6zg119rdmqhgrzi3s10856l9vyrqmd8c858hw20aiagvxn5nik"; depends=[]; }; - sesameData = derive2 { name="sesameData"; version="1.20.0"; sha256="0a5xchdnlw9ixafk8p3ny58yqv74ba9j4z2sdyp990rbaqrx1gjw"; depends=[AnnotationHub ExperimentHub GenomeInfoDb GenomicRanges IRanges readr S4Vectors stringr]; }; - seventyGeneData = derive2 { name="seventyGeneData"; version="1.38.2"; sha256="1zpks4fpwjb640pggwd1xldri2lf3fl8pcbvi244c6dgkf8nq93i"; depends=[]; }; - shinyMethylData = derive2 { name="shinyMethylData"; version="1.22.0"; sha256="1i6ffgi79jgpkg6nhil7v7vi23yv2j7czzibj6dxdc0kpb1n0q1h"; depends=[]; }; - signatureSearchData = derive2 { name="signatureSearchData"; version="1.16.0"; sha256="1xn0y7mcpk4s4x9azzabxfq0hxwlx7dvpb4yjrl3x8zcyk394s3z"; depends=[affy Biobase dplyr ExperimentHub limma magrittr R_utils rhdf5]; }; - simpIntLists = derive2 { name="simpIntLists"; version="1.38.0"; sha256="1683dsi6bm45v5wk9fgvrmvap15w6gvwnfijg5ayj29shiaa2qif"; depends=[]; }; - smokingMouse = derive2 { name="smokingMouse"; version="1.0.0"; sha256="0xm4a7yp6802xcmh29hwvlz39gqb5s380mzi5rck89fl6wjl4bf6"; depends=[]; }; - spatialDmelxsim = derive2 { name="spatialDmelxsim"; version="1.8.0"; sha256="110anvdbsq8mh3ibfhps9hyfhlk2np4mjs224377s1sasmpzwbbb"; depends=[ExperimentHub SummarizedExperiment]; }; - spatialLIBD = derive2 { name="spatialLIBD"; version="1.14.1"; sha256="0zqbnj55d06xai9qlg1hcy2kczjn6zxrhqwwsi18a36511qks5qb"; depends=[AnnotationHub benchmarkme BiocFileCache BiocGenerics cowplot DT edgeR ExperimentHub fields GenomicRanges ggplot2 golem IRanges jsonlite limma magick Matrix paletteer plotly png RColorBrewer rtracklayer S4Vectors scater scuttle sessioninfo shiny shinyWidgets SingleCellExperiment SpatialExperiment statmod SummarizedExperiment tibble viridisLite]; }; - spqnData = derive2 { name="spqnData"; version="1.14.0"; sha256="0kvnkz71w1c7yhl4kqdj9j51d1ix2g7q3pqr2678f31hhw7yr1ck"; depends=[SummarizedExperiment]; }; - stemHypoxia = derive2 { name="stemHypoxia"; version="1.38.0"; sha256="1ak78mvgm9dv80ji44b1cb4y8bq0l4k0cpx734m8dy8mr3i8nblw"; depends=[]; }; - stjudem = derive2 { name="stjudem"; version="1.42.0"; sha256="0pcvvvaqalr5jklqy7vzxkp0cd9nj9dk941drgr7ndbqc2navz2c"; depends=[]; }; - synapterdata = derive2 { name="synapterdata"; version="1.40.0"; sha256="1hl3r6smv25vhwxwrxw2c98db4c36392js49zj9kgf7c22qpyaqr"; depends=[synapter]; }; - systemPipeRdata = derive2 { name="systemPipeRdata"; version="2.6.0"; sha256="004sjgvhn9hq14f4mwfakrkkm2mwr2bdcbld25b393in0k26r9hf"; depends=[BiocGenerics Biostrings jsonlite remotes]; }; - tartare = derive2 { name="tartare"; version="1.16.0"; sha256="1w8z756s2c4vcxan8lid5mflyn8n718vhqn72x3mspg1pbb6k0l6"; depends=[AnnotationHub ExperimentHub]; }; - timecoursedata = derive2 { name="timecoursedata"; version="1.12.0"; sha256="10i4wcdjqd2qh6rpl65xi5mj2hsam78hi3haqp4xhg0ha4f73nb3"; depends=[SummarizedExperiment]; }; - tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.40.0"; sha256="12db5w6fsmpjx2xgq7f3hp5czm21jp17826mi7jdz1c0217i1h4s"; depends=[]; }; - tinesath1probe = derive2 { name="tinesath1probe"; version="1.40.0"; sha256="1s119zkz03rq0bs3fjx85rwr7f2fxk144ykvglbzz3m6wxwi94r9"; depends=[AnnotationDbi]; }; - tissueTreg = derive2 { name="tissueTreg"; version="1.22.0"; sha256="17hjzwvk9pa1zhvmqrs99dnm428bm2br4xjmydp7d8j2mdsbkfs3"; depends=[]; }; - tofsimsData = derive2 { name="tofsimsData"; version="1.30.0"; sha256="18fn2krbc1mg3phx1sjpshsq9n39jlm75n9s7615h4jdcky9gzld"; depends=[]; }; - topdownrdata = derive2 { name="topdownrdata"; version="1.24.0"; sha256="01wxdwq87yan5a71z60bzs18w1ryjvgscnrrpdksqs56009k5992"; depends=[topdownr]; }; - tuberculosis = derive2 { name="tuberculosis"; version="1.8.0"; sha256="15jmhn7lrdwz19hv076yf0g2wqw7c32vp4pjzj2151f4xzxrl1iz"; depends=[AnnotationHub dplyr ExperimentHub magrittr purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; - tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.40.0"; sha256="1s071578qldq564ylrkd9azn5519rdc3g1gdp9v8hj4zh8kza56v"; depends=[Biobase]; }; - tximportData = derive2 { name="tximportData"; version="1.30.0"; sha256="0ksmg3gblkqzz40pzm35y6wghjmszrimdx7bxhq5jv4piqwii0hg"; depends=[]; }; - vulcandata = derive2 { name="vulcandata"; version="1.24.0"; sha256="18wbxwwp7bsmdbn4g6d96x45b672fyrhlh38kbcz3j5dysdg1clr"; depends=[]; }; - xcoredata = derive2 { name="xcoredata"; version="1.6.0"; sha256="1chcjylfdl07q19f924hsml22lbfcjrzndp1appi3q80hzbc3pz6"; depends=[ExperimentHub]; }; - yeastCC = derive2 { name="yeastCC"; version="1.42.0"; sha256="1abl3jlwznzdmfpsqy0bfvrn6xx99yc8wz70s228lalvac4lqrfn"; depends=[Biobase]; }; - yeastExpData = derive2 { name="yeastExpData"; version="0.48.0"; sha256="13hxrcsvxwjdr649xzl07fkl0mzx6j36hkmgmj9zj270gsvlchns"; depends=[graph]; }; - yeastGSData = derive2 { name="yeastGSData"; version="0.40.0"; sha256="0i3fawlbxb6xc9wilxlc5gjr22ikp1x4rc2dich1cmpbjqd2zg1c"; depends=[]; }; - yeastNagalakshmi = derive2 { name="yeastNagalakshmi"; version="1.38.0"; sha256="1d1y7xpggizgiv2qma31mlzri2jidir425q08fdnnm9ymcxx83z0"; depends=[]; }; - yeastRNASeq = derive2 { name="yeastRNASeq"; version="0.40.0"; sha256="1b7bdbyzh6lx4qp4md9b7qxd433l8wpswfq0azxjdn33yryv8spm"; depends=[]; }; - zebrafishRNASeq = derive2 { name="zebrafishRNASeq"; version="1.22.0"; sha256="0fhsg1j40rkzxphnq7gl98zyqijacmfrjf4ffmbvr70mxw3zysgz"; depends=[]; }; + ALL = derive2 { name="ALL"; version="1.46.0"; sha256="1yl8b8q8i19kx4viwinhyq9xn9d4axlfgjvm7cpf7pys4krhnrha"; depends=[Biobase]; }; + ALLMLL = derive2 { name="ALLMLL"; version="1.44.0"; sha256="0pmdw42wrmhqm3754s3kkz7wjih63h21zlrwl1b7lkli79vbzkpd"; depends=[affy]; }; + ARRmData = derive2 { name="ARRmData"; version="1.40.0"; sha256="02y44d0dappc3srl2d7lgipm6a62gvd8vivzaq4594dnmy8rvkw3"; depends=[]; }; + ASICSdata = derive2 { name="ASICSdata"; version="1.24.0"; sha256="03wlk2x9bz5xjhnfgxl5zdagnwm60f23bz1qhlgqfs94zfay0jrq"; depends=[]; }; + Affyhgu133A2Expr = derive2 { name="Affyhgu133A2Expr"; version="1.40.0"; sha256="0l55wr09j2p8dkzx8cas2whf404anf477h2bmpv267mglrs1sp32"; depends=[]; }; + Affyhgu133Plus2Expr = derive2 { name="Affyhgu133Plus2Expr"; version="1.38.0"; sha256="04cxyjk1dhal8iapfilzck8kxpw8jvswxxb7fhnbxqghwlhjg617"; depends=[]; }; + Affyhgu133aExpr = derive2 { name="Affyhgu133aExpr"; version="1.42.0"; sha256="047yza31rrdmzjbg6chqrz61fh7j1a013fww5nj1nwp60rd6iln1"; depends=[]; }; + AffymetrixDataTestFiles = derive2 { name="AffymetrixDataTestFiles"; version="0.42.0"; sha256="1ijprvhbhq68v2g8z9yqwwqw2lz4f4a2pa7lnq2vhf54p9s96sn1"; depends=[]; }; + Affymoe4302Expr = derive2 { name="Affymoe4302Expr"; version="1.42.0"; sha256="11n5mx1m21j6cc4qrwzrxj3749zc42b1ivwnp47cf55h6j2c3rgm"; depends=[]; }; + AmpAffyExample = derive2 { name="AmpAffyExample"; version="1.44.0"; sha256="0j5alica5z8fzcwiva3dg1wmncwwkchb7avwvhszk7p7ym0s983q"; depends=[affy]; }; + AneuFinderData = derive2 { name="AneuFinderData"; version="1.32.0"; sha256="1qysi874hsa4a7xz0na0cxv0sx02d3b74h77s30mfww1wsg8jy69"; depends=[]; }; + AshkenazimSonChr21 = derive2 { name="AshkenazimSonChr21"; version="1.34.0"; sha256="0bm2f7pnxibgcsi5kghjzmin01sirprym5i94qsiga7c6dknqgmn"; depends=[]; }; + AssessORFData = derive2 { name="AssessORFData"; version="1.21.0"; sha256="10rbwdcjqfhq9ramrzfxd3bl2q2nqminsj3pigid6fmvyg0ykfhk"; depends=[DECIPHER]; }; + BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.42.0"; sha256="1s62vqvl3zxf97syp5lymacah594m8szk23skl4bk88jkzkkx6a5"; depends=[beadarray GEOquery limma]; }; + BeadSorted_Saliva_EPIC = derive2 { name="BeadSorted.Saliva.EPIC"; version="1.12.0"; sha256="1pjnamvgx9w3g40j82rbdysbarx11gm8k6lb3vhkgb2nxv1vij84"; depends=[ExperimentHub minfi]; }; + BioImageDbs = derive2 { name="BioImageDbs"; version="1.12.0"; sha256="1cs6c80h34xbzpsgrpy5aj1f0nlxmy713jj1q5g156z5kiz3mzwc"; depends=[animation AnnotationHub EBImage einsum ExperimentHub filesstrings magick magrittr markdown rmarkdown]; }; + BioPlex = derive2 { name="BioPlex"; version="1.10.0"; sha256="1bkakf7yi1lhwc48pmwifk7qdnc9hzaqnlcni7sy0ypwgb1mfsh7"; depends=[BiocFileCache GenomeInfoDb GenomicRanges GEOquery graph SummarizedExperiment]; }; + BloodCancerMultiOmics2017 = derive2 { name="BloodCancerMultiOmics2017"; version="1.24.0"; sha256="16c6nirflpj0zf2wrj0hb5xcq2168si95np3sm76r3kvwlr48zm7"; depends=[beeswarm Biobase DESeq2 devtools dplyr ggdendro ggplot2 glmnet gtable ipflasso RColorBrewer reshape2 scales SummarizedExperiment survival tibble]; }; + CCl4 = derive2 { name="CCl4"; version="1.42.0"; sha256="0n3kx176if48gmw3qd5knlv5q7v7738c54ix8cwr2xhsqc7ah800"; depends=[Biobase limma]; }; + CLL = derive2 { name="CLL"; version="1.44.0"; sha256="18bjaqf6cjvjfcp80b5zmb48qbywacqs6aiarsh6ksq2yj4np4zs"; depends=[affy Biobase]; }; + CLLmethylation = derive2 { name="CLLmethylation"; version="1.24.0"; sha256="0pafgk4sagyrsddzg5a0nigs518ki2rikhkj02mngh9x4kipkhip"; depends=[ExperimentHub SummarizedExperiment]; }; + COHCAPanno = derive2 { name="COHCAPanno"; version="1.40.0"; sha256="0gdb08vxna4rhf5lyhjr9prww58sikjiv49i4sy6hgj5a1chz288"; depends=[]; }; + CONFESSdata = derive2 { name="CONFESSdata"; version="1.32.0"; sha256="0xmbgr6iq4nzxw8gvb099c65bxsc0aqfwn55l2hyr7zskqc3apka"; depends=[]; }; + COPDSexualDimorphism_data = derive2 { name="COPDSexualDimorphism.data"; version="1.40.0"; sha256="0wxhsj29yycmfgwl1sxz3yynwwwccxs1n9kcvdd6940jm4rz8nvq"; depends=[]; }; + COSMIC_67 = derive2 { name="COSMIC.67"; version="1.40.0"; sha256="0b9w91qvxakrwwgkzfmhd7ily9yy5jmwimiykckksrhf1fr7i7zp"; depends=[GenomicRanges SummarizedExperiment VariantAnnotation]; }; + CRCL18 = derive2 { name="CRCL18"; version="1.24.0"; sha256="1f513yxinql9qnxmlcfarhn840bxkbwxjqs661c9zliah26hv2wp"; depends=[Biobase]; }; + CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.36.0"; sha256="09b0a7ss64mx0ag6rwa7nld0hfzhrr7pfy4iimd0isfz1hm55kd8"; depends=[Cardinal]; }; + CellMapperData = derive2 { name="CellMapperData"; version="1.30.0"; sha256="1rw0793g5bj1zwa5wi4f9d7l3y29c88c2s16ia0ph1j72zr0vyrn"; depends=[CellMapper ExperimentHub]; }; + ChAMPdata = derive2 { name="ChAMPdata"; version="2.36.0"; sha256="0x006ilgqrf15135ivxv8qrcyhssl1w6pm1gpnna96za58l2f2rr"; depends=[BiocGenerics GenomicRanges]; }; + ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.42.0"; sha256="0jfiii3akdsg4drj3x3rmjakzr85bhzdxl5w433qkrzb4dm724q0"; depends=[bigmemory]; }; + ChIPexoQualExample = derive2 { name="ChIPexoQualExample"; version="1.28.0"; sha256="07m4515g0gq4qv7yyx0qy0y4c2zb1dm30yhkzh43z34m6rkgsf1f"; depends=[]; }; + ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.42.0"; sha256="04cixcachip43kynlz4l6fh1y0wdzijgipvkz5rvlhqca7mpdqss"; depends=[affy hexbin limma qvalue statmod]; }; + CluMSIDdata = derive2 { name="CluMSIDdata"; version="1.20.0"; sha256="01r4cfy0ny5vh0x1ihkynyxfxgjsprhim7913vzj0d1kgdkzdr6z"; depends=[]; }; + CoSIAdata = derive2 { name="CoSIAdata"; version="1.4.0"; sha256="1mld9j54ywkgz63brf8lmfi57f1hmclyv3m9lw201wyni48nx377"; depends=[ExperimentHub]; }; + ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.40.0"; sha256="1i7bv10kmmgb355nmp3qsm9awcba69h8chhvcmw718hg5x2axrdh"; depends=[]; }; + CopyNeutralIMA = derive2 { name="CopyNeutralIMA"; version="1.22.0"; sha256="12pw212lrqsas08hzan6sh56iasx74adbnngvyj2dllgc30971i8"; depends=[ExperimentHub Rdpack]; }; + CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.36.0"; sha256="1ijlba601wknkj6ybbnarcdw1z54f76gkdgynpry1v8jpbpvcadr"; depends=[]; }; + CytoMethIC = derive2 { name="CytoMethIC"; version="1.0.0"; sha256="19ms0i2rs0b3lbg71m3k43hy0wx45yif6pv3nnchbafysnlzp04n"; depends=[BiocManager BiocParallel ExperimentHub sesame sesameData tibble]; }; + DAPARdata = derive2 { name="DAPARdata"; version="1.34.0"; sha256="055rlbc2sky8am6vcz09vxpj8n34y3lmajlp8n6zz086w7fgfd8d"; depends=[MSnbase]; }; + DExMAdata = derive2 { name="DExMAdata"; version="1.12.0"; sha256="17gm48hawh42cdbqr1bbrb7nccx3lwan8nca353vyj43pjr3s46n"; depends=[Biobase]; }; + DLBCL = derive2 { name="DLBCL"; version="1.44.0"; sha256="0sakxhj192khn777aspzzckrjnzi89ng5wnzvzxgfdbpwh2nfl4d"; depends=[Biobase graph]; }; + DMRcatedata = derive2 { name="DMRcatedata"; version="2.22.0"; sha256="119r3c2yc5hbj5x0h7r930rwhp0k5rsnfmbmvl2rhz02wq2ychhy"; depends=[ExperimentHub GenomicFeatures Gviz IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 plyr readxl rtracklayer]; }; + DNAZooData = derive2 { name="DNAZooData"; version="1.4.0"; sha256="1bs2pnak2v2szp7zly8ysf8pqh7f70w70cbqqzvnxlf35npv7cxd"; depends=[BiocFileCache HiCExperiment rjson S4Vectors]; }; + DeSousa2013 = derive2 { name="DeSousa2013"; version="1.40.0"; sha256="1icjl4rr8jk16hs8ri925v3gf9lasi4x39yf5a7av39byb2zwqif"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; }; + DmelSGI = derive2 { name="DmelSGI"; version="1.36.0"; sha256="0xjj2ky0k8vazw97qsaf79c6cc3whxg0n5v6lrj6slk4hyfcmbw4"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; }; + DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.42.0"; sha256="0mcz0vdawz62qpdz8dmw359qim0b5wy42wp5r0h5pw05fh03b9bp"; depends=[EBImage]; }; + DropletTestFiles = derive2 { name="DropletTestFiles"; version="1.14.0"; sha256="1n98mgzc6dscm6wy18mf0l5l5bvx3m35xdniarv83j8302xra9n1"; depends=[AnnotationHub ExperimentHub S4Vectors]; }; + DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.40.0"; sha256="0pmydn60f80ga6la6gxn1l1baw22kqqf1v2gbcniq7qm5axj6vh2"; depends=[]; }; + DuoClustering2018 = derive2 { name="DuoClustering2018"; version="1.22.0"; sha256="042v3dpirp68qsdbhygvx3apx94xxdmzpm0swii30kzkw1r1xfck"; depends=[dplyr ExperimentHub ggplot2 ggthemes magrittr mclust purrr reshape2 tidyr viridis]; }; + DvDdata = derive2 { name="DvDdata"; version="1.40.0"; sha256="0l298n6fj57yz6ml5xp1gmwxkj200pwsijbxxf2k8f028m4igy0k"; depends=[]; }; + EGSEAdata = derive2 { name="EGSEAdata"; version="1.32.0"; sha256="0448hr7zz1wibi8l3plb9hsr6x0a7hz0pmqchhbzbsqwjjdrsgid"; depends=[]; }; + ELMER_data = derive2 { name="ELMER.data"; version="2.28.0"; sha256="1ppmdqc0j3hkngg0nzx18vw8sgnfbrhxyb3l1l5mhv3gq02rslxz"; depends=[GenomicRanges]; }; + EatonEtAlChIPseq = derive2 { name="EatonEtAlChIPseq"; version="0.42.0"; sha256="109law5cc64xipwqyanw71h8v5nx08s1iaskh05hm1w18dsjxff1"; depends=[GenomicRanges rtracklayer ShortRead]; }; + EpiMix_data = derive2 { name="EpiMix.data"; version="1.6.0"; sha256="037kp9ziawdxfxydg4jb64k6klv9j78wp45gi72prisl4hj5hlp3"; depends=[ExperimentHub]; }; + FANTOM3and4CAGE = derive2 { name="FANTOM3and4CAGE"; version="1.40.0"; sha256="0vmpgq694jvrcbnx2ik7cyq2axfm7xl3sibd2b9k3dpxaw62gipm"; depends=[]; }; + FIs = derive2 { name="FIs"; version="1.32.0"; sha256="0l084k6p8nsnv51fxb55lass72qhjm4ff84i4y3if5p29gzl8frz"; depends=[]; }; + FieldEffectCrc = derive2 { name="FieldEffectCrc"; version="1.14.0"; sha256="0g9b5a7l802z6g2s95x4m914hwwn5qqnlxvag3qbvy3bhwx3xyi6"; depends=[AnnotationHub BiocStyle DESeq2 ExperimentHub RUnit SummarizedExperiment]; }; + Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.40.0"; sha256="0l839hd76xr94qjcnscr9c40nvsx99ir6vsy1zx6dn7cha52mpar"; depends=[Biobase gplots limma VennDiagram]; }; + Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.40.0"; sha256="0agnkc207bma3h89xxrzcywny664f42vfd63qnmyda4kvdvvk0km"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; }; + FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.42.0"; sha256="0lc45dg5jq0kqycpsggrhi5fa4xj1ciqrj6iw548ccjgdyy2w1xh"; depends=[minfi]; }; + FlowSorted_Blood_EPIC = derive2 { name="FlowSorted.Blood.EPIC"; version="2.8.0"; sha256="1b0azyslk2g08i6v1vv2niw32f0zqasw85b9klw83zdy2f5dcdvh"; depends=[AnnotationHub ExperimentHub genefilter minfi nlme quadprog S4Vectors SummarizedExperiment]; }; + FlowSorted_CordBlood_450k = derive2 { name="FlowSorted.CordBlood.450k"; version="1.32.0"; sha256="1bbx2s8vzkawwpywcc33xbgjbc134q6fqgnflk30sfq1pfpxcmsm"; depends=[minfi]; }; + FlowSorted_CordBloodCombined_450k = derive2 { name="FlowSorted.CordBloodCombined.450k"; version="1.20.0"; sha256="14486v4cs3j1jmifsgy3ihpm5x7i9581yz4bwsl3h2a7p86cdsbv"; depends=[AnnotationHub ExperimentHub IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi SummarizedExperiment]; }; + FlowSorted_CordBloodNorway_450k = derive2 { name="FlowSorted.CordBloodNorway.450k"; version="1.30.0"; sha256="1r78j0786bl9420cxcmhw07bzakl71r2kar41bwkd6xwfpj2znj5"; depends=[minfi]; }; + FlowSorted_DLPFC_450k = derive2 { name="FlowSorted.DLPFC.450k"; version="1.40.0"; sha256="0h21h2nywy9dfqw3d1xw87wah19nidl8k7d0zqpqxql6agr1p92j"; depends=[minfi]; }; + GIGSEAdata = derive2 { name="GIGSEAdata"; version="1.22.0"; sha256="1pwi3bn7xj2m7kg02dwn17rnhirl2qf1d67p2m9194f3iwy4vrp8"; depends=[]; }; + GSBenchMark = derive2 { name="GSBenchMark"; version="1.24.0"; sha256="1al1k9c513l3if8kag24dkrmr6m8ajck30gd8yqkcncsrrgc769j"; depends=[]; }; + GSE103322 = derive2 { name="GSE103322"; version="1.10.0"; sha256="0iv75phj9s8yyk0h3mnv12aak26kspbqhxvc4dbjjdd4g6jawlgv"; depends=[Biobase GEOquery]; }; + GSE13015 = derive2 { name="GSE13015"; version="1.12.0"; sha256="0l1v30g1g93wk5bnhkw52pwypby6n0rxpp11aw93j733whn9j2y4"; depends=[Biobase GEOquery preprocessCore SummarizedExperiment]; }; + GSE159526 = derive2 { name="GSE159526"; version="1.10.0"; sha256="1j8dy1zrw4isscspzb83n7k0x8yaf97zyyfyjh26ff7l997cqdvk"; depends=[]; }; + GSE62944 = derive2 { name="GSE62944"; version="1.32.0"; sha256="041sby283m8ajb96gdg3zcrs0l6760svx8wijxfabq9dygiiaqp8"; depends=[Biobase GEOquery]; }; + GSVAdata = derive2 { name="GSVAdata"; version="1.40.0"; sha256="0d1xgjizi58hwbralla62jch3kl4bqx0dg0lhh0h1bk9jyicyqjy"; depends=[Biobase GSEABase hgu95a_db]; }; + GWASdata = derive2 { name="GWASdata"; version="1.42.0"; sha256="08w9qlf6vprvf383mji0hhzpn65jicqmkbljqndh7r7s4hp1z9jr"; depends=[GWASTools]; }; + GenomicDistributionsData = derive2 { name="GenomicDistributionsData"; version="1.12.0"; sha256="16cj8w6n053aciz9wclppmc22b9s4a9lh58r6wi2lhs0sp7iirzn"; depends=[AnnotationFilter AnnotationHub BSgenome data_table ensembldb ExperimentHub GenomeInfoDb GenomicFeatures GenomicRanges]; }; + GeuvadisTranscriptExpr = derive2 { name="GeuvadisTranscriptExpr"; version="1.32.0"; sha256="1n9yq4lqs6v9qdw9rm9hy8dww6n5axpkncms2drkjn2hv8xlqgj8"; depends=[]; }; + HCAData = derive2 { name="HCAData"; version="1.20.0"; sha256="1kdp9iwn0vy7hlxyh09vrl6cwj7ajy2zqk23w3rxa5py710prp1q"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; + HCATonsilData = derive2 { name="HCATonsilData"; version="1.2.0"; sha256="1wg0mvc3gwf80bgsfkvdcnnzy7qbnffbbrcy3f87jyw4a20irpp1"; depends=[base64enc ExperimentHub HDF5Array htmltools rmarkdown S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + HD2013SGI = derive2 { name="HD2013SGI"; version="1.44.0"; sha256="0r4nlbz7b70z1ii9wisk8nj218m2j5qmpfj8k2sp8k723gmsg4x0"; depends=[EBImage geneplotter gplots limma LSD RColorBrewer splots vcd]; }; + HDCytoData = derive2 { name="HDCytoData"; version="1.24.0"; sha256="0pmzgp7x1zam3b7agi8mdq14qmx8nln9lnhiglax2pvg2a5n4ii4"; depends=[ExperimentHub flowCore SummarizedExperiment]; }; + HEEBOdata = derive2 { name="HEEBOdata"; version="1.42.0"; sha256="0nkggzidbzya9g7v412iwjkm6pah5siha1jai48k3hhfa4i51jj7"; depends=[]; }; + HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.44.0"; sha256="1mrza15digswpqszff88caclfwbwxql7dx6gih4gz72cnpyx3fpj"; depends=[]; }; + HMP16SData = derive2 { name="HMP16SData"; version="1.24.0"; sha256="16x7mw5bdsyda1qv0v739pkr8lxq8hga84vhmaa8qnx45pwqyyh0"; depends=[AnnotationHub assertthat dplyr ExperimentHub kableExtra knitr magrittr readr S4Vectors stringr SummarizedExperiment tibble]; }; + HMP2Data = derive2 { name="HMP2Data"; version="1.18.0"; sha256="014bf29kg9dizi3p0fdxrs42bf9a0dc2f7zd7yxzvzs3jqvniji2"; depends=[AnnotationHub assertthat data_table dplyr ExperimentHub kableExtra knitr magrittr MultiAssayExperiment phyloseq readr S4Vectors SummarizedExperiment]; }; + HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="1.24.0"; sha256="18p8hk2dq26pp4fvcf1m8wsvj1mn66i8nr900knl2n9vs09j70wy"; depends=[]; }; + HarmanData = derive2 { name="HarmanData"; version="1.32.0"; sha256="1bf9jl9gl10gawv835hp8wxzzs1v9g3y3qzpki63j3dw5yssazh5"; depends=[]; }; + HarmonizedTCGAData = derive2 { name="HarmonizedTCGAData"; version="1.26.0"; sha256="1zi0605nq51zpgap9jsbkilpxalwlpld0crvxivk6pmgrbavvlf7"; depends=[ExperimentHub]; }; + HelloRangesData = derive2 { name="HelloRangesData"; version="1.30.0"; sha256="19gk0xhvpnqqrr6pxiwyyhszi93pjjfiknfj1gvzdrj81p06qhbh"; depends=[]; }; + HiBED = derive2 { name="HiBED"; version="1.2.0"; sha256="0sqxlm2nn8g7qfwhndf79dg7v57ngmznr0b297v59nhhpigs1g2q"; depends=[AnnotationHub dplyr FlowSorted_Blood_EPIC FlowSorted_DLPFC_450k minfi SummarizedExperiment tibble]; }; + HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="1.24.0"; sha256="1xndbds4clzpblc6gjz7lr48pkvi3j2m0a9jzavff45ds7aa6jxk"; depends=[]; }; + HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.40.0"; sha256="1sb384dca5n1lanv5k4idjx1b1hmvfdv1xp14m8k00gcnacgj9v3"; depends=[]; }; + HiContactsData = derive2 { name="HiContactsData"; version="1.6.0"; sha256="0q92gvvlx4zx6sxi9sdzwjmwvdzaw6fj0nkr5d4h8j0hv7ycylmi"; depends=[AnnotationHub BiocFileCache ExperimentHub]; }; + HighlyReplicatedRNASeq = derive2 { name="HighlyReplicatedRNASeq"; version="1.16.0"; sha256="01b09hk33p14lfrrpk0agi6prf9wbv6zs0qn07jdsm63vmawscds"; depends=[ExperimentHub S4Vectors SummarizedExperiment]; }; + Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.40.0"; sha256="0xn3ayh2x04cvwrr476k8vlp8lhk5lxaqg01a0ynkrrc4scf2f99"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; }; + HumanAffyData = derive2 { name="HumanAffyData"; version="1.30.0"; sha256="0jnikpd3djps3wp4vd3l9911jkzfm8h5pp0gv8l9bx5s2skkdrw1"; depends=[Biobase ExperimentHub]; }; + IHWpaper = derive2 { name="IHWpaper"; version="1.32.0"; sha256="0s3x2chbr8ik3rhgzmfhaq8xlsnnkzfhjh4p327sn5aar6xhaj67"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; }; + ITALICSData = derive2 { name="ITALICSData"; version="2.42.0"; sha256="1d0awis142kgx9hi0dggl6gqg17m0awqzn8ncpqh2lwaka372dq8"; depends=[]; }; + Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.40.0"; sha256="1jpknhp624753rhalf81kvl02k4wj19xpncagzf85c878953vph0"; depends=[]; }; + IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.42.0"; sha256="0xmyhqaa34chd2fxzbs7rk72wyx086cfhnjjh4lwjmb8acbp9xi8"; depends=[]; }; + Iyer517 = derive2 { name="Iyer517"; version="1.46.0"; sha256="0b9j6bc0dfx5mqyd7z7bzmfp6s59cy4dqr1pxzjy05yyfznbc72p"; depends=[Biobase]; }; + JASPAR2014 = derive2 { name="JASPAR2014"; version="1.40.0"; sha256="0m4g6vp78zsnzkfjmjfjwvd04505lz55njm7ml7dycwv6lmaxivk"; depends=[Biostrings]; }; + JASPAR2016 = derive2 { name="JASPAR2016"; version="1.32.0"; sha256="09q5m71drbp64n26plr0a9bz71akcs4g7pqqyjmsmjrzi40kx7hr"; depends=[]; }; + JohnsonKinaseData = derive2 { name="JohnsonKinaseData"; version="1.0.0"; sha256="1ry5p2zll8hazxil4sa57v50b7xr9bk4p5a509i4mvasb089al3l"; depends=[BiocParallel checkmate dplyr ExperimentHub purrr stringr tidyr]; }; + KEGGandMetacoreDzPathwaysGEO = derive2 { name="KEGGandMetacoreDzPathwaysGEO"; version="1.24.0"; sha256="1fqybcvwa8dls2kv8mkdydmkw0bzihr3xp3m853mffkdjjsrzkyk"; depends=[Biobase BiocGenerics]; }; + KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.42.0"; sha256="1mbvy9x8zp02337sw92hh00vvqcamldqdsdy4zp53qiskrpidkdc"; depends=[Biobase BiocGenerics]; }; + KOdata = derive2 { name="KOdata"; version="1.30.0"; sha256="1ia8fyas2yfird4a0md85s3ak96hb1pdrvay48zzsmhmpgf1yj44"; depends=[]; }; + LRcellTypeMarkers = derive2 { name="LRcellTypeMarkers"; version="1.12.0"; sha256="1cghhh1rv8w7819dzi982q862m6yj62pckx8r925j2di1him9db8"; depends=[ExperimentHub]; }; + LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.42.0"; sha256="0hx2lfpidg54r6kslz3yx6d1lv4vjdrk6s2whii0070hbr18lvjj"; depends=[IRanges KernSmooth]; }; + ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.36.0"; sha256="0j4vvac93m8vqidwvqczggkfdk07dabycqprhsnmj8f0g8hpaq9v"; depends=[methylPipe]; }; + LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.40.0"; sha256="1h0m67ak452bbza0s3dsmh2vi9wdi1mgl4bvflhin1gxcgb6fk6p"; depends=[]; }; + LungCancerLines = derive2 { name="LungCancerLines"; version="0.42.0"; sha256="0gmjpagl71vddsvcx3iwql175lv0lc5m6j071wnwh10z59a9jams"; depends=[Rsamtools]; }; + M3DExampleData = derive2 { name="M3DExampleData"; version="1.30.0"; sha256="0g7p7vn2im6d4gamalfm2lcssdg874fgb23wra5c34dzrzz9nr0v"; depends=[]; }; + MACSdata = derive2 { name="MACSdata"; version="1.12.0"; sha256="0wffmyshsylf118xfcdyl8bd5xy9gz726lpx3avmxz3a8x917vbr"; depends=[]; }; + MAQCsubset = derive2 { name="MAQCsubset"; version="1.42.0"; sha256="0x59gbv91d90hasa2gwkv00c06zp8fj4fk18386ajfag0wpvpb2n"; depends=[affy Biobase lumi]; }; + MEDIPSData = derive2 { name="MEDIPSData"; version="1.40.0"; sha256="0x9317wgrhvqwh87d1vls5m06jyzsli2yhkc345n6iwxzz3a0brr"; depends=[]; }; + MEEBOdata = derive2 { name="MEEBOdata"; version="1.42.0"; sha256="1cj563a0fjwdrbrwnfzk7l79mjg95hanp5rs6rvjz30b8s5gmwqm"; depends=[]; }; + MMAPPR2data = derive2 { name="MMAPPR2data"; version="1.18.0"; sha256="0rbi0psjwk0jgjpliv0hhjvq9wmwb8w4wgqw45wqba6qfpm70wya"; depends=[Rsamtools]; }; + MMDiffBamSubset = derive2 { name="MMDiffBamSubset"; version="1.40.0"; sha256="1psm5f7wrqwqwxzkmqkaz629i1d7zn2s5zs6sgmhijqp7rzhmhc4"; depends=[]; }; + MOFAdata = derive2 { name="MOFAdata"; version="1.20.0"; sha256="1sjpvs2vdmmrr5mkk734502lhs3nr3n0brscvh77y1n42abxy26x"; depends=[]; }; + MSMB = derive2 { name="MSMB"; version="1.22.0"; sha256="0kwjdgf526q63kln6j7a0v6v14x1qx5hlpannpb5grah2lyxz4rw"; depends=[tibble]; }; + MUGAExampleData = derive2 { name="MUGAExampleData"; version="1.24.0"; sha256="0mrap1whvlzlmbrfg611cq3c9a1w2pq3wmijk842cybsx8az59xd"; depends=[]; }; + MerfishData = derive2 { name="MerfishData"; version="1.6.0"; sha256="1i8war9rg7fwjdfhj5xa6sp3lmp30j0di04gckskmz6pk9pjjg4r"; depends=[AnnotationHub BumpyMatrix EBImage ExperimentHub S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + MetaGxBreast = derive2 { name="MetaGxBreast"; version="1.24.0"; sha256="05cz500r6fhlq5pfviiqj8cfv173027dqsdvhvvi57cbbx3qqn6r"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; + MetaGxOvarian = derive2 { name="MetaGxOvarian"; version="1.24.0"; sha256="01cnm2rf6ls1q5plgazxqkrrw3b6mcrxbq0wrmi0ra8daqh6asi7"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; + MetaGxPancreas = derive2 { name="MetaGxPancreas"; version="1.24.0"; sha256="150i72jrq3qshsh0m20kxdcx7zxz1cgvlk0y2nxnacs1xbdnywxv"; depends=[AnnotationHub ExperimentHub impute S4Vectors SummarizedExperiment]; }; + MetaScope = derive2 { name="MetaScope"; version="1.4.0"; sha256="1kaisvhp66g95w4dycw8jzsxh00f2c193rjcla6l5k2dn5rnsyr9"; depends=[BiocFileCache Biostrings data_table dplyr ggplot2 magrittr Matrix MultiAssayExperiment Rbowtie2 readr rlang Rsamtools S4Vectors stringr SummarizedExperiment taxize tibble tidyr]; }; + MethylAidData = derive2 { name="MethylAidData"; version="1.36.0"; sha256="1f328mhf9b64scr45c9sshcgnsw9lb1g9in22xx2sak40dspjx2a"; depends=[MethylAid]; }; + MethylSeqData = derive2 { name="MethylSeqData"; version="1.14.0"; sha256="197347pavq9hjcpwa9lq66lyjr1jb7mymd9pjz01rr9f77d7rqq5"; depends=[ExperimentHub GenomeInfoDb GenomicRanges HDF5Array IRanges rhdf5 S4Vectors SummarizedExperiment]; }; + MicrobiomeBenchmarkData = derive2 { name="MicrobiomeBenchmarkData"; version="1.6.0"; sha256="00lr183x24yx4xd9cpxvzkcxmqp4dinfi1nz2arqqxnbfcp2s25j"; depends=[ape BiocFileCache S4Vectors SummarizedExperiment TreeSummarizedExperiment]; }; + MouseAgingData = derive2 { name="MouseAgingData"; version="1.0.0"; sha256="1867xjhwbsjlzlm8fq0j8ggbhhym427l7vcx9i9g6zwkda7p64x3"; depends=[AnnotationHub ExperimentHub SingleCellExperiment]; }; + MouseGastrulationData = derive2 { name="MouseGastrulationData"; version="1.18.0"; sha256="0adw98vym1jir1jrzaws7zrlfvls6rfl8bvkpq5sjy4crb33lxy2"; depends=[BiocGenerics BumpyMatrix ExperimentHub S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + MouseThymusAgeing = derive2 { name="MouseThymusAgeing"; version="1.12.0"; sha256="1vkbfni6zyr9qhzxfgfj7c5y639amsgbi3chcnsch36r35bnaxp2"; depends=[BiocGenerics ExperimentHub S4Vectors SingleCellExperiment SummarizedExperiment]; }; + NCIgraphData = derive2 { name="NCIgraphData"; version="1.40.0"; sha256="0macj01775q3dzqhvsbfb2gkz0s8w49vgbfh2nhpgfykwzx5bwjm"; depends=[]; }; + NGScopyData = derive2 { name="NGScopyData"; version="1.24.0"; sha256="1j780dkzv08ajyz0c9dh2ygqsyycyhnzvxl1jrc3gvxdddr1syvj"; depends=[]; }; + NanoporeRNASeq = derive2 { name="NanoporeRNASeq"; version="1.14.0"; sha256="0lpjxpw5jd4zj9pjd3xjcaxkcn135rbhz628zpl44qrdnmyjg2wk"; depends=[ExperimentHub]; }; + NestLink = derive2 { name="NestLink"; version="1.20.0"; sha256="1yh1nivipyrx3h0par8cf943licl1rs47jvfwz1392hi09vji15j"; depends=[AnnotationHub Biostrings ExperimentHub gplots protViz ShortRead]; }; + NetActivityData = derive2 { name="NetActivityData"; version="1.6.0"; sha256="1jcj9k5mzf30wimwwv4gix85n597bv20bjh32nrha2yqiihp9k34"; depends=[]; }; + Neve2006 = derive2 { name="Neve2006"; version="0.42.0"; sha256="0w3ph610lhxyg1knhsnnxpw32sw2n5p57svpbhqm3zmphx29nw3h"; depends=[annotate Biobase hgu133a_db]; }; + NxtIRFdata = derive2 { name="NxtIRFdata"; version="1.10.0"; sha256="0qwqpzaqp9m8202sp7pdpii90j9yh97ipk36ivh9ba3s05agwq8p"; depends=[BiocFileCache ExperimentHub R_utils rtracklayer]; }; + OMICsPCAdata = derive2 { name="OMICsPCAdata"; version="1.22.0"; sha256="0p0pjgffxc72b3wx6wnn0d0wc27qdp5z6my1xr19604drn7sd20x"; depends=[MultiAssayExperiment]; }; + ObMiTi = derive2 { name="ObMiTi"; version="1.12.0"; sha256="061qyy69wlr5zhp3m499lq83dq7rwch8ll3a10vwmmwx1l40n8xa"; depends=[ExperimentHub SummarizedExperiment]; }; + OnassisJavaLibs = derive2 { name="OnassisJavaLibs"; version="1.26.0"; sha256="1j2nyrkx9ish1v2yvr8wsahhclpy2mvdnrwnk19fkv8kr1hjwjws"; depends=[rJava]; }; + PCHiCdata = derive2 { name="PCHiCdata"; version="1.32.0"; sha256="12nzy9m96jsal7sfqqdi8q7vq9rb4jc5h3hbl11aq4ik66048dyh"; depends=[Chicago]; }; + PREDAsampledata = derive2 { name="PREDAsampledata"; version="0.44.0"; sha256="0ydb4y2s8kshia7k6mr941f1fc7nsqahm1g86ig3wpcq7al33z1b"; depends=[affy annotate Biobase PREDA]; }; + PWMEnrich_Dmelanogaster_background = derive2 { name="PWMEnrich.Dmelanogaster.background"; version="4.38.0"; sha256="1wnm4jq5lzz50wzsz9v0kw104c1m67j68qlq6773ikdblsrlq23x"; depends=[PWMEnrich]; }; + PWMEnrich_Hsapiens_background = derive2 { name="PWMEnrich.Hsapiens.background"; version="4.38.0"; sha256="0fjzlnzv4fk9a90vnl39shx6d84bv61rc3hda6h18md5al202jyj"; depends=[PWMEnrich]; }; + PWMEnrich_Mmusculus_background = derive2 { name="PWMEnrich.Mmusculus.background"; version="4.38.0"; sha256="0w815iqjfv0f0kybr84y3q4xsvxihixbiljsdz09xgafam3l80a3"; depends=[PWMEnrich]; }; + PasillaTranscriptExpr = derive2 { name="PasillaTranscriptExpr"; version="1.32.0"; sha256="0pwqfmcm0cw0z42571fa8w2lpy5mx516mckvk1dwys2yzdhjj24a"; depends=[]; }; + PathNetData = derive2 { name="PathNetData"; version="1.40.0"; sha256="1pa6hrkyz1byldlch3h7brw2klxi9v2gg97j6814qiqiv84ms90y"; depends=[]; }; + PepsNMRData = derive2 { name="PepsNMRData"; version="1.22.0"; sha256="1yzdpfbfivkyvnw76c24j2rbwfkjsnh0blv2z9x8aj1s0b3m5rjy"; depends=[]; }; + PhyloProfileData = derive2 { name="PhyloProfileData"; version="1.18.0"; sha256="1bnzrqcyvhr4cnxkiwlpw5rjhrkbs6lm050yjnm79b2gd2whyk81"; depends=[BiocStyle Biostrings ExperimentHub]; }; + ProData = derive2 { name="ProData"; version="1.42.0"; sha256="0ysmv66irrq7q8yzk77kkcrxdrcs1pa0z20dfhcsaqkd84yn74jz"; depends=[Biobase]; }; + PtH2O2lipids = derive2 { name="PtH2O2lipids"; version="1.30.0"; sha256="0garsf77h2nb1zcy3z8ypk3c95pjjnzhxvfwlznn4i1l6qi45mds"; depends=[CAMERA LOBSTAHS xcms]; }; + QDNAseq_hg19 = derive2 { name="QDNAseq.hg19"; version="1.34.0"; sha256="054c565wqr3cadym8kmf0wm0k2n3ri6x4bla4zyhra0v8cz6axjb"; depends=[QDNAseq]; }; + QDNAseq_mm10 = derive2 { name="QDNAseq.mm10"; version="1.34.0"; sha256="08lj3vcnjg38fnnppa3nsg8sw6gfhklak9prpjxig9yzcg4pggwx"; depends=[QDNAseq]; }; + QUBICdata = derive2 { name="QUBICdata"; version="1.32.0"; sha256="0gdsyvfrwsbbm786bkkqxxsc5s3wpn7fyhf4f227gr8sg3l7fkbi"; depends=[]; }; + RGMQLlib = derive2 { name="RGMQLlib"; version="1.24.0"; sha256="09149yaw2gpypp0m7cghbjqksbj0ncly8fxlv1n7l2s8kaq5jkdq"; depends=[]; }; + RITANdata = derive2 { name="RITANdata"; version="1.28.0"; sha256="0k1rziwpb26y19j2cii9y2vffr0sdkskll41njwpkl5mla5bzylv"; depends=[]; }; + RLHub = derive2 { name="RLHub"; version="1.9.0"; sha256="0hm3wplzmmzsygz8dalwf6y798p4g2bssjdsg51w17s2mgm4hl98"; depends=[AnnotationHub ExperimentHub]; }; + RMassBankData = derive2 { name="RMassBankData"; version="1.42.0"; sha256="10g42s6wq66fhvrxcwxf08073scpkinfldwwdl03r7lxy1wka426"; depends=[]; }; + RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.42.0"; sha256="0vm20x1lfgl671rrwvxybcwjgk7falb3d5xi6hiq9jivvbms9120"; depends=[Biobase fields gdata genefilter lattice MASS RNAinteract sparseLDA]; }; + RNAmodR_Data = derive2 { name="RNAmodR.Data"; version="1.18.0"; sha256="0k5ykbry5si0wc6f1am3ln9pcl842hjrpmmw15j9sm565k5pmvmf"; depends=[ExperimentHub ExperimentHubData]; }; + RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.42.0"; sha256="1xc5ya20nnrhdkib7590zv5g8q6cppd6qiwglxc6fj26ncdj6s73"; depends=[]; }; + RRBSdata = derive2 { name="RRBSdata"; version="1.24.0"; sha256="1s6fjkz0dld7mlb1ylqmrw63jk3k0162rv2li6zkz66gc4aq10p0"; depends=[BiSeq]; }; + RTCGA_CNV = derive2 { name="RTCGA.CNV"; version="1.32.0"; sha256="0ll5zj9d9d3ykkkq7iqq5sfvz8i4dc297nwkjpvjxrlazw28iiyl"; depends=[RTCGA]; }; + RTCGA_PANCAN12 = derive2 { name="RTCGA.PANCAN12"; version="1.32.0"; sha256="0rmgg5j4rzqg78i43l9975vhdnh8r23lz78fkwwa94ihpqv1pbic"; depends=[RTCGA]; }; + RTCGA_RPPA = derive2 { name="RTCGA.RPPA"; version="1.32.0"; sha256="158m31hysybyh3ha5n324srrxzc76bkv9fpblida2znv9sni6c52"; depends=[RTCGA]; }; + RTCGA_clinical = derive2 { name="RTCGA.clinical"; version="20151101.34.0"; sha256="1s7fss644wkrvimqp2h3hq14gr0gjdqyj92hcrzff2qwyy5fzhky"; depends=[RTCGA]; }; + RTCGA_mRNA = derive2 { name="RTCGA.mRNA"; version="1.32.0"; sha256="1anwv8cg38lpwfyxicqi8kml9q9gigrc7bzmp163322lxaq79c1q"; depends=[RTCGA]; }; + RTCGA_methylation = derive2 { name="RTCGA.methylation"; version="1.32.0"; sha256="04q23w331vjmmmy2iy79grkgdn03iz53vw8npwx2wq1w8if8xdi4"; depends=[RTCGA]; }; + RTCGA_miRNASeq = derive2 { name="RTCGA.miRNASeq"; version="1.32.0"; sha256="1bgcgsx01s7p24014rp8jiklmml822hxabrgf4xxagx4jzr91fxn"; depends=[RTCGA]; }; + RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="20151101.34.0"; sha256="19las4v4zg8wbb52wa4zmwpfpn80pyjp1kyvqkhgvpd8m3dj7951"; depends=[RTCGA]; }; + RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="20151101.34.0"; sha256="03kr2l5l5a7v98rna3a43543b7pqcwc7zhawnh92g3rdabk03w9s"; depends=[RTCGA]; }; + RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="1.24.0"; sha256="0w62ybdiq0dwd11ld48kl178qpd53xbfl51z2jwpi2pj1b86fg9l"; depends=[Biobase]; }; + RcisTarget_hg19_motifDBs_cisbpOnly_500bp = derive2 { name="RcisTarget.hg19.motifDBs.cisbpOnly.500bp"; version="1.24.0"; sha256="170wjqnrvmdjcpx0bwwky3j7cxhbqvch781dzl6il2igca9kbqhq"; depends=[data_table]; }; + ReactomeGSA_data = derive2 { name="ReactomeGSA.data"; version="1.18.0"; sha256="1410ks6s7albf6sly8ry0ln58ws9jlfn62amniqqsg46kx4xc4bh"; depends=[edgeR limma ReactomeGSA Seurat]; }; + RegParallel = derive2 { name="RegParallel"; version="1.22.0"; sha256="0zaask3zpbqh6pmrx4hsi5wz7kkfhbl15xzhz10s8h9m739wm8c0"; depends=[arm data_table doParallel foreach iterators stringr survival]; }; + RforProteomics = derive2 { name="RforProteomics"; version="1.42.0"; sha256="0irg6wrwy82xhlkgj1vphh6ncp9s6qcpp40mxv1vq969qjjchkk9"; depends=[BiocManager biocViews MSnbase R_utils]; }; + RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.36.0"; sha256="0yn7n3zv9i76abx9wp0vw6wa7iylbrj2ffhzbc3irc104id0i4f9"; depends=[GenomicRanges]; }; + RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.36.0"; sha256="05ffx8a76z9nnl3qhfjf6vfnnc2pqkw2jy4pc0wgqc1y3w9vg60l"; depends=[GenomicRanges]; }; + RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="2.12.0"; sha256="151ivmy35ff850f1ij403bj5g9jhw8r515jjqbvq182x1cygbdfl"; depends=[GenomicRanges]; }; + RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.36.0"; sha256="1bd5jai5jk1d3mqbx7x05ypfxma8s330na9n5bb9qzwxq7imd50b"; depends=[GenomicRanges]; }; + RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.36.0"; sha256="098vy604ca0g408hl2g0p6kh2zzvzvbmyhbr0z081rbdpvzlnf4f"; depends=[GenomicRanges]; }; + RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.36.0"; sha256="1gm55gmsxna8a53k7a7yd99nzc4mg1kw7l5lnmkipa03lafa2yff"; depends=[edgeR]; }; + SBGNview_data = derive2 { name="SBGNview.data"; version="1.18.0"; sha256="1hycjipfz6lr1hs1r7g65l565pcx77sz8bjacg5gdcv3rs1by2ql"; depends=[bookdown knitr rmarkdown]; }; + SCLCBam = derive2 { name="SCLCBam"; version="1.36.0"; sha256="18im1j8j1y4hva4wg6vki59j1bifz9apijyi44wngsx68z19az35"; depends=[]; }; + SFEData = derive2 { name="SFEData"; version="1.6.0"; sha256="03f7f9jrdszvwqgskk12jqw8mvyrrhcjd5v1nzdiy3csg2fa7nbs"; depends=[AnnotationHub BiocFileCache ExperimentHub]; }; + SNAData = derive2 { name="SNAData"; version="1.50.0"; sha256="1l3g5gsiv5s83b6406s23snf62zav75s28nq68s8czbm1rsv6xw5"; depends=[graph]; }; + SNAGEEdata = derive2 { name="SNAGEEdata"; version="1.40.0"; sha256="00m10r01sx027pnahw5ck1paplqpwsyq11dkacxq21ssvlc8kbl6"; depends=[]; }; + SNPhoodData = derive2 { name="SNPhoodData"; version="1.34.0"; sha256="0r036vskwlk0mp7bgcbvr7iwffcm7g7imzwh5gri05j5p0rhny72"; depends=[]; }; + STexampleData = derive2 { name="STexampleData"; version="1.12.3"; sha256="1c9lbghi1ybilrc7yiff12sjyaqpr8095wdvz941lnf3cmgci79q"; depends=[ExperimentHub SingleCellExperiment SpatialExperiment]; }; + SVM2CRMdata = derive2 { name="SVM2CRMdata"; version="1.36.0"; sha256="18pd61cg12ghi8kjh1cjyrd248r20l39drbg9vpqmmcpai5f45wy"; depends=[]; }; + SimBenchData = derive2 { name="SimBenchData"; version="1.12.0"; sha256="0a3q2ajr0pzwdabx306c8bia25cbih3hfzd5jgm2cx9f5i37f11v"; depends=[ExperimentHub S4Vectors]; }; + Single_mTEC_Transcriptomes = derive2 { name="Single.mTEC.Transcriptomes"; version="1.32.0"; sha256="0h54w7lc8v5jicm6xf5i16pi8rw2fxqvssf7a0ql9qa6bv4c7sqy"; depends=[]; }; + SingleCellMultiModal = derive2 { name="SingleCellMultiModal"; version="1.16.0"; sha256="1kzfzprma01ppbpbzgfgaa3dins2915n3wqsrqapcxfks7zvaciq"; depends=[AnnotationHub BiocBaseUtils BiocFileCache ExperimentHub HDF5Array Matrix MultiAssayExperiment S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + SingleMoleculeFootprintingData = derive2 { name="SingleMoleculeFootprintingData"; version="1.12.0"; sha256="0xdi5rpqpj07h8j1n7wxfsmvrp6zsnc5rq1b2frdp8x3xdlf5dxn"; depends=[ExperimentHub]; }; + SomatiCAData = derive2 { name="SomatiCAData"; version="1.42.0"; sha256="01k9s97rd78pciv4yaij07zzrijvfidpg6hh4h67mnxc90pg3r8w"; depends=[]; }; + SomaticCancerAlterations = derive2 { name="SomaticCancerAlterations"; version="1.40.0"; sha256="11jvin7y5ys1lxwfjrwb4vw4gcpj09y0n6rhs87w27gcpj4dk7dm"; depends=[GenomicRanges IRanges S4Vectors]; }; + SpatialDatasets = derive2 { name="SpatialDatasets"; version="1.2.0"; sha256="0qg9x657kamqqcifziagp3qrk5h2zh16jl8dprzl7nnrxhp0cra2"; depends=[ExperimentHub SpatialExperiment]; }; + SpikeIn = derive2 { name="SpikeIn"; version="1.46.0"; sha256="1bnhag1cck99k6mgfnqddjxjhmpgax76p28hm686jkil416y0y47"; depends=[affy]; }; + SpikeInSubset = derive2 { name="SpikeInSubset"; version="1.44.0"; sha256="118v972wwq4h2ww2nlb7mzva3d38c4hzmbq0v28500q2zc1ykv4l"; depends=[affy Biobase]; }; + SubcellularSpatialData = derive2 { name="SubcellularSpatialData"; version="1.0.0"; sha256="0lyg6hiv8ch7c8a7zzi02c9fmq2zqif88khhslj15gvg5dznw79v"; depends=[dplyr hexbin Matrix SpatialExperiment]; }; + TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.40.0"; sha256="0hxmizdgrbv6vqlxj6hn4wiazjf3cwaaq17pagqmjlfxbqb4mlzk"; depends=[Rsamtools xtable]; }; + TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.40.0"; sha256="1c2jgrh5fsnq4d8aw8p1147jsdz8yi60i3naxsd8kj3s9mn1vfn2"; depends=[]; }; + TCGAWorkflowData = derive2 { name="TCGAWorkflowData"; version="1.28.0"; sha256="0sg9zn06rf63n9z6qggxwrh5mxjg0gq1zjj1fn141d7xdbw1j784"; depends=[SummarizedExperiment]; }; + TCGAbiolinksGUI_data = derive2 { name="TCGAbiolinksGUI.data"; version="1.24.0"; sha256="1r36f7nvvjjgkgmhha81n2iyr9k4nzy0qkkblm483rgzxav4gqa6"; depends=[]; }; + TCGAcrcmRNA = derive2 { name="TCGAcrcmRNA"; version="1.24.0"; sha256="07sszvf7wd50gj5sgkj4di9a5y4yqcgi9ykssmp9n16bam1xp0a8"; depends=[Biobase]; }; + TCGAcrcmiRNA = derive2 { name="TCGAcrcmiRNA"; version="1.24.0"; sha256="0jc6shc18kvd69v8wrgifg3cvi5idv1hlnd4x93njxbj9yyxr8xd"; depends=[Biobase]; }; + TENxBUSData = derive2 { name="TENxBUSData"; version="1.18.0"; sha256="19a909cs0z8zy6vwlxxgk76ybj9yrhsxd2z8narf50rv96nyid0s"; depends=[AnnotationHub BiocGenerics ExperimentHub]; }; + TENxBrainData = derive2 { name="TENxBrainData"; version="1.24.0"; sha256="1kb5i3xrins9jd40xzyi4sj9nks83vzw1w8pk7ji6kgyjdgm1by6"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; + TENxPBMCData = derive2 { name="TENxPBMCData"; version="1.22.0"; sha256="089q81wiq7flr1a72gmj7y1ds73zzc2h96pnjm7s5sbysgy4jgx9"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; + TENxVisiumData = derive2 { name="TENxVisiumData"; version="1.12.0"; sha256="08jcq5vq0ki4q6ndpm3799kwiy62j446v4kbfdfw7j7rwgjmhjhs"; depends=[ExperimentHub SpatialExperiment]; }; + TENxXeniumData = derive2 { name="TENxXeniumData"; version="1.0.0"; sha256="1zjyry8m4f8xw6apib90rv8lyxhpdy3nqgawshhslv8w8qwk3xs9"; depends=[BumpyMatrix ExperimentHub SpatialExperiment SpatialFeatureExperiment SummarizedExperiment]; }; + TMExplorer = derive2 { name="TMExplorer"; version="1.14.0"; sha256="0qxm46dryq7c4xrbkhgbfqxqn0p7x1nxklqhkdw8qmklszc2b870"; depends=[BiocFileCache Matrix SingleCellExperiment]; }; + TabulaMurisData = derive2 { name="TabulaMurisData"; version="1.22.0"; sha256="0gnv8yfksrc59prki6w6xa5pw5nszxkx88i5av3ln21hq5idj4cm"; depends=[ExperimentHub]; }; + TabulaMurisSenisData = derive2 { name="TabulaMurisSenisData"; version="1.10.0"; sha256="1b1aj06qacvzpabz8r0vkqpm0pp48vx26xx84h5ihzg9232wrqmy"; depends=[AnnotationHub ExperimentHub gdata HDF5Array SingleCellExperiment SummarizedExperiment]; }; + TargetScoreData = derive2 { name="TargetScoreData"; version="1.40.0"; sha256="18y7vidhgkhpr9nlhxwhhi7z07vj6ii1vwl9c8dyyhzfc8icsmsn"; depends=[]; }; + TargetSearchData = derive2 { name="TargetSearchData"; version="1.42.0"; sha256="0dzb1jazdwx37kx0xwvv9i7rfq1712bifz542x4liahvxjgz7prg"; depends=[]; }; + TimerQuant = derive2 { name="TimerQuant"; version="1.34.0"; sha256="1gjnfmsbcj8ndj1fssclzlb5qd482c38gpi0q4x7ls98bk42r44x"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; }; + TransOmicsData = derive2 { name="TransOmicsData"; version="1.0.1"; sha256="0sfpks0wfzlrh5qqg0id5c99l1dzj2l1nd5h3shjhp0lm4f5v8w0"; depends=[S4Vectors]; }; + TumourMethData = derive2 { name="TumourMethData"; version="1.2.0"; sha256="1xwm2amlb1vrf3hpdw9387nglc6pbxxdxik56byr5p8856fkjdav"; depends=[ExperimentHub GenomicRanges HDF5Array R_utils rhdf5 SummarizedExperiment]; }; + VariantToolsData = derive2 { name="VariantToolsData"; version="1.28.0"; sha256="0k8fg4bhghva32qk4l6r4g6asdkyl2afx0frbk0f57b2hqix69fb"; depends=[BiocGenerics GenomicRanges VariantAnnotation]; }; + VectraPolarisData = derive2 { name="VectraPolarisData"; version="1.8.0"; sha256="13r0r1whcxzzhlsa3bjsq9kp3csgnynbcrxj06v5s73xf8xify00"; depends=[ExperimentHub SpatialExperiment]; }; + WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.36.0"; sha256="1yv62ydvlsl52awzn2nsa52vaz4naf4biw57awpmz0cp4rb68kdb"; depends=[]; }; + WGSmapp = derive2 { name="WGSmapp"; version="1.16.0"; sha256="0k4zyj9dn5x710a1vv11156brz52yf9lzmlmx9axcfsch5dcvi7x"; depends=[GenomicRanges]; }; + WeberDivechaLCdata = derive2 { name="WeberDivechaLCdata"; version="1.6.0"; sha256="0nkh8c329n0jh33wa0knnwi9vvk8na1d3lpm3g5lrzl8624kdllv"; depends=[ExperimentHub SingleCellExperiment SpatialExperiment]; }; + XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.42.0"; sha256="0n0k6h9b9gkywy6cmlx15g09287aqzvc228j3jgjkv0ljbwsq756"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; }; + adductData = derive2 { name="adductData"; version="1.20.0"; sha256="1ydd7zxag0cmw7mj38srqs4w6lbp1ic5i8s1ay6pifv14arcncrz"; depends=[AnnotationHub ExperimentHub]; }; + affycompData = derive2 { name="affycompData"; version="1.42.0"; sha256="16fri51jhp0lm3aj9hw2s6jzxjlxz2qbd36j9zcbcs7sb6jh42jy"; depends=[affycomp Biobase]; }; + affydata = derive2 { name="affydata"; version="1.52.0"; sha256="0srmrb2pf5dhjfm1l1jd06jgnah16qxillxi5zjr8vq7pgvw8x4b"; depends=[affy]; }; + airway = derive2 { name="airway"; version="1.24.0"; sha256="0yj9ac58iplcakzw6yyglyiwwhiyslp2hlnszhp3258grvbfvcby"; depends=[SummarizedExperiment]; }; + antiProfilesData = derive2 { name="antiProfilesData"; version="1.40.0"; sha256="1mlps08fra7ssbymwf260c43skp2pzw477mp090ycfaj8ncdzqqp"; depends=[Biobase]; }; + aracne_networks = derive2 { name="aracne.networks"; version="1.30.0"; sha256="1xfzs1n9wis3r0q4g0hg4amhx4zldbslidx1i4d90vcrgzfdh4x6"; depends=[viper]; }; + bcellViper = derive2 { name="bcellViper"; version="1.40.0"; sha256="0mx92gs9065lz0c01mzng9snalvmdb3xbsm1r3f6fnhg478da4yq"; depends=[Biobase]; }; + beadarrayExampleData = derive2 { name="beadarrayExampleData"; version="1.42.0"; sha256="0l5n1d7x4gc3w2kc6vq0gqxp1wdpa2sn5k75yf5fc802m11nrkd1"; depends=[beadarray Biobase]; }; + benchmarkfdrData2019 = derive2 { name="benchmarkfdrData2019"; version="1.18.0"; sha256="1k8gpql57jps51bh5kdn5j5mgz36a369p4sz37sbqkfrskfs8m91"; depends=[ExperimentHub SummarizedExperiment]; }; + beta7 = derive2 { name="beta7"; version="1.42.0"; sha256="0c7zal2hk7knw2mcfkfh7svz3b6nz98y895mhl3ari986wqpj4nv"; depends=[marray]; }; + biotmleData = derive2 { name="biotmleData"; version="1.28.0"; sha256="0c50778lwkapgvwn7nvhjyn7irxn85d97mfyawgfgs9kzyfxx1a3"; depends=[]; }; + biscuiteerData = derive2 { name="biscuiteerData"; version="1.18.0"; sha256="1qv2ajy312diacb3mihc3q7hrrlq48k5vd9v0g6w38cqz6gnz0as"; depends=[AnnotationHub curl ExperimentHub GenomicRanges]; }; + bladderbatch = derive2 { name="bladderbatch"; version="1.42.0"; sha256="00cgkpa6mb32q3xl5clkpdh5rkwx7c81rxmyh2qr0jpwpmd3gjwc"; depends=[Biobase]; }; + blimaTestingData = derive2 { name="blimaTestingData"; version="1.24.0"; sha256="0414hiah3yzkcdayb43vz5dafv6samaczg556wyl7ig2275k3q6h"; depends=[]; }; + bodymapRat = derive2 { name="bodymapRat"; version="1.20.0"; sha256="15kjgqq7lq94pjqg380swqrkv684kgbpkaikfxxdx4cpgx8sjzn7"; depends=[ExperimentHub SummarizedExperiment]; }; + breakpointRdata = derive2 { name="breakpointRdata"; version="1.22.0"; sha256="1hm190ji3s451x2hchmpyzx6v4n8p1n6fdqg7cbzmj19rzsb4wha"; depends=[]; }; + breastCancerMAINZ = derive2 { name="breastCancerMAINZ"; version="1.42.0"; sha256="1i2h0f38skkv1m5gas15jdjw4jl8ma4w1sv74j1x9g1zfl9xq3rg"; depends=[]; }; + breastCancerNKI = derive2 { name="breastCancerNKI"; version="1.42.0"; sha256="0vnwyqn5wg9iqmgb6zx6rciw62n8bxkdyfxlaggl35dpwwpzdb2f"; depends=[]; }; + breastCancerTRANSBIG = derive2 { name="breastCancerTRANSBIG"; version="1.42.0"; sha256="0s2h6qy19jnk5s23r0vkv6j77n5qr7ncanmkz0ybx5qyfyicz9m4"; depends=[]; }; + breastCancerUNT = derive2 { name="breastCancerUNT"; version="1.42.0"; sha256="0i8xw534hywfa382nyfy94g2fk0nfaid306dxrlijkfbs2b24dy9"; depends=[]; }; + breastCancerUPP = derive2 { name="breastCancerUPP"; version="1.42.0"; sha256="183dy6c3wqc2m65vihdn840wvnq64vwndwcfsvhw39znqpszhs9k"; depends=[]; }; + breastCancerVDX = derive2 { name="breastCancerVDX"; version="1.42.0"; sha256="0mvm2a77mss85vi8x3i35d54z70advyshsmadhl6aysrzfiw5ifd"; depends=[]; }; + brgedata = derive2 { name="brgedata"; version="1.26.0"; sha256="1h2ka8k12lx4326y50scw80n21xkf67ks7kqs2ss6sbwd536gm61"; depends=[Biobase SummarizedExperiment]; }; + bronchialIL13 = derive2 { name="bronchialIL13"; version="1.42.0"; sha256="0g1cfhfjycpv1jmba5jddff88m7pbz1l02kci9w73qzjcnqgpp12"; depends=[affy]; }; + bsseqData = derive2 { name="bsseqData"; version="0.42.0"; sha256="06k6r288bqi9dshpdz6qlz0d3p1srz8yc1b0xrar9wy5fckdb97d"; depends=[bsseq]; }; + cMap2data = derive2 { name="cMap2data"; version="1.40.0"; sha256="1vaqqszdx3bfdqm3ckn12w9f474wnyqyi7kz0wrj1y50wnwpm38f"; depends=[]; }; + cancerdata = derive2 { name="cancerdata"; version="1.42.0"; sha256="1jgcg16v09wpga5zivx221mz2bnl37gwpjhlmq9a8h5vxlqcb9wl"; depends=[Biobase]; }; + ccdata = derive2 { name="ccdata"; version="1.30.0"; sha256="0q77dk9rifwpp1c2ga1y3yxf1dwvlkmmn5sw285a1c5h6pipxsj3"; depends=[]; }; + celarefData = derive2 { name="celarefData"; version="1.22.0"; sha256="1njq6i1803avcn2h9p3d2cnp8viwv7jak1b5kfqhcvl8jwwxlr59"; depends=[]; }; + celldex = derive2 { name="celldex"; version="1.14.0"; sha256="155hnh62ra06b52xk78f111b10gm34d1djvl5w5mabvrk4vknwj6"; depends=[alabaster_base alabaster_matrix alabaster_se AnnotationDbi AnnotationHub DBI DelayedArray DelayedMatrixStats ExperimentHub gypsum jsonlite Matrix RSQLite S4Vectors SummarizedExperiment]; }; + cfToolsData = derive2 { name="cfToolsData"; version="1.2.0"; sha256="0hhc9fn6rm9dnzlvs3lk5v0h5m76knl5nblnda26a36wdwz547ld"; depends=[ExperimentHub]; }; + chipenrich_data = derive2 { name="chipenrich.data"; version="2.28.0"; sha256="1kpc3ljayxycadshdgyzkbagh4vd7cmyqqccy61269skpasdnwbv"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicRanges IRanges readr rtracklayer S4Vectors]; }; + chipseqDBData = derive2 { name="chipseqDBData"; version="1.20.0"; sha256="16mfq2mdwrc40i6wyjc9g897sk2rk0way6shc0nw9d1fkf4fsf8l"; depends=[AnnotationHub ExperimentHub Rsamtools S4Vectors]; }; + chromstaRData = derive2 { name="chromstaRData"; version="1.30.0"; sha256="0v28zg8z5b72hci7rqbvjvcgp979zxnq6xgck4baypmkj9ac5wn3"; depends=[]; }; + clustifyrdatahub = derive2 { name="clustifyrdatahub"; version="1.14.0"; sha256="1asssxa8kw2r5ai14kg06ajzkqfmqfvrp6ydjwgf8pkyc4m53r4p"; depends=[ExperimentHub]; }; + cnvGSAdata = derive2 { name="cnvGSAdata"; version="1.40.0"; sha256="19dskn9kjk1phn2xlsx4wikwvagv48av6ar845hzwwyq7rzllyy6"; depends=[cnvGSA]; }; + colonCA = derive2 { name="colonCA"; version="1.46.0"; sha256="17h4vcpvll01ggp280bspxsl1swiakfabs6n73874sjnik64wp2q"; depends=[Biobase]; }; + crisprScoreData = derive2 { name="crisprScoreData"; version="1.8.0"; sha256="1a5ji6zbvnlbdzcqj4arpi6am7vaq31brxaxawr93knpy4lksd4f"; depends=[AnnotationHub ExperimentHub]; }; + curatedAdipoArray = derive2 { name="curatedAdipoArray"; version="1.16.0"; sha256="0gs68q5gfn0ba6y0p429s8v989cfnnlii9066wvqgd8ixqcig66i"; depends=[]; }; + curatedAdipoChIP = derive2 { name="curatedAdipoChIP"; version="1.20.0"; sha256="1yzxz6wjddf4mn6yw8zlz2yq6rhfs0639widql99hjclni1llxkc"; depends=[ExperimentHub SummarizedExperiment]; }; + curatedAdipoRNA = derive2 { name="curatedAdipoRNA"; version="1.20.0"; sha256="1q22clkypj8y6am609h4748z2jc2lhhm8kdcv9s3dzx272dmm0w5"; depends=[SummarizedExperiment]; }; + curatedBladderData = derive2 { name="curatedBladderData"; version="1.40.0"; sha256="0ma11myfh5kddksn81rspjq7l44vn0mgz2c98krpdgfv8qynf6ky"; depends=[affy]; }; + curatedBreastData = derive2 { name="curatedBreastData"; version="2.32.0"; sha256="0zglh1h9hw6rnpdl4v5v7cmzgcvxa0phfixfwwmi8il0rn40jd68"; depends=[Biobase BiocStyle ggplot2 impute XML]; }; + curatedCRCData = derive2 { name="curatedCRCData"; version="2.35.0"; sha256="1q6xmp32w39jsw7jrphpygyv63vd640nmpz69nlhhisbbpjd259c"; depends=[BiocGenerics nlme]; }; + curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="3.12.0"; sha256="1hp1s5v567xidmmpn6jv7i3fid5hwg3i43y9471aabq00nsg67b1"; depends=[AnnotationHub dplyr ExperimentHub magrittr mia purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect TreeSummarizedExperiment]; }; + curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.42.0"; sha256="0rigr8nwcr60vp164hyjw20dw54mwlfg71m4naiz6m1v47d7cg1i"; depends=[Biobase BiocGenerics]; }; + curatedPCaData = derive2 { name="curatedPCaData"; version="1.0.0"; sha256="0wqvg0z19lxyqbbsl7fbq12jgycpqycx45vy24z4sph48kz2ag3w"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment RaggedExperiment rlang S4Vectors]; }; + curatedTBData = derive2 { name="curatedTBData"; version="2.0.0"; sha256="03wmr9iyhqwbpmp7azq9im5waxy4viqhx0lsmqpk2bsijmigrg0z"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment rlang]; }; + curatedTCGAData = derive2 { name="curatedTCGAData"; version="1.26.0"; sha256="1xdygjwqgy6kjjxzvsy25bckc0f8j5m42wrj1vrnwy5fp0q7y287"; depends=[AnnotationHub ExperimentHub HDF5Array MultiAssayExperiment S4Vectors SummarizedExperiment]; }; + davidTiling = derive2 { name="davidTiling"; version="1.44.0"; sha256="06r600sn2ga5jrwahxh3ysv4c713sxi0g6y6v46zpcwilkj10gp3"; depends=[Biobase GO_db tilingArray]; }; + depmap = derive2 { name="depmap"; version="1.18.0"; sha256="0imajc5kiqf45sjwxagvg5bjvmnrzrk3ls4bflwxj9rnd84v2r62"; depends=[AnnotationHub BiocFileCache curl dplyr ExperimentHub httr2 tibble]; }; + derfinderData = derive2 { name="derfinderData"; version="2.22.0"; sha256="14gyw3cii7np0rw9j39hcrij9kcybbrwxwz9qa4wx98ddzfixrcn"; depends=[]; }; + diffloopdata = derive2 { name="diffloopdata"; version="1.32.0"; sha256="0qhbdq5j900nmpfbz3bcr4jn9zd43fnr7rd94lsv69dpjmsv7ikw"; depends=[]; }; + diggitdata = derive2 { name="diggitdata"; version="1.36.0"; sha256="0js94wbi9rfsmwj7q8mbh2fimwpiw45ahb1a1g0300zxzf9y61ax"; depends=[Biobase viper]; }; + dorothea = derive2 { name="dorothea"; version="1.16.0"; sha256="08s961ra7f6q4dag39rgdrg5minvzm58g22r8xkwfiw0hfavacbg"; depends=[bcellViper decoupleR dplyr magrittr]; }; + dressCheck = derive2 { name="dressCheck"; version="0.42.0"; sha256="1i6lcf8lxp0v0lpkckx3yhzyzj841w3x6qj3kaxls4bfkzr3hls6"; depends=[Biobase]; }; + dyebiasexamples = derive2 { name="dyebiasexamples"; version="1.44.0"; sha256="1ihkhfhgqywnp2vxrqpzvm5w3ncy6acwcns2ah1fm8xsq1bvcs5v"; depends=[GEOquery marray]; }; + easierData = derive2 { name="easierData"; version="1.10.0"; sha256="0l6qhlaa02d2sqaa0yfxqqm1giga5jppq74sfgrih1ccqh348am7"; depends=[AnnotationHub ExperimentHub SummarizedExperiment]; }; + ecoliLeucine = derive2 { name="ecoliLeucine"; version="1.44.0"; sha256="09pk2ay2j5gvk60vavs03cgfhma8bvsynxabkfcvr1hkl87qfl2k"; depends=[affy ecolicdf]; }; + emtdata = derive2 { name="emtdata"; version="1.12.0"; sha256="0b3hvggndw3bzddk0vflbn0wx8fr08b6nphjhil1wqlyp3535xk4"; depends=[edgeR ExperimentHub SummarizedExperiment]; }; + epimutacionsData = derive2 { name="epimutacionsData"; version="1.8.0"; sha256="06z3lxp8lsr2nqw3yqiddy3h4y6iid3n7s1ykbaz0dpm05vdq8i2"; depends=[]; }; + estrogen = derive2 { name="estrogen"; version="1.50.0"; sha256="077mr5xz2w90iik8r6jraip377dbily14rnkpc7njicqnnq1d6m7"; depends=[]; }; + etec16s = derive2 { name="etec16s"; version="1.32.0"; sha256="0hlvvmgm42g0lzsb5kljdfs0fcdpwwz3b3h7x88szg7fzqlvainz"; depends=[Biobase metagenomeSeq]; }; + ewceData = derive2 { name="ewceData"; version="1.12.0"; sha256="1xk4i38a1yb3zx42hfh2b427y28103h2mpjvxa03fnwkl0lcb46j"; depends=[ExperimentHub]; }; + faahKO = derive2 { name="faahKO"; version="1.44.0"; sha256="0bd93q332m7agqgsfkgsp87wv5fx6g2qsgn2z2n0bfsn3vmjjzc4"; depends=[xcms]; }; + fabiaData = derive2 { name="fabiaData"; version="1.42.0"; sha256="1wzq802q1i52jh82yh9i2kdbya7qrmcjr646dc78vr6vng2k541s"; depends=[Biobase]; }; + ffpeExampleData = derive2 { name="ffpeExampleData"; version="1.42.0"; sha256="1dzrbqlgh114m4lvikp638bqmw0yq3rwz9bpb1cfbpqlyji97wx7"; depends=[lumi]; }; + fibroEset = derive2 { name="fibroEset"; version="1.46.0"; sha256="09lpn8s95rbbmv0zk3mg512ddxdv7gpp16hqyh7krsrfr9r8kjxs"; depends=[Biobase]; }; + fission = derive2 { name="fission"; version="1.24.0"; sha256="095fd01jd105826gpv038zwj7p4iz7drbm3gy6r0w329xlv4lpp2"; depends=[SummarizedExperiment]; }; + flowPloidyData = derive2 { name="flowPloidyData"; version="1.30.0"; sha256="1qlwv4v1mgxk444scdvmdpak0rpph51mc4al1qfbavd34l4yq6zc"; depends=[]; }; + flowWorkspaceData = derive2 { name="flowWorkspaceData"; version="3.16.0"; sha256="11p2b85h8dmajj0pakmb7i4lr2rx9ghlm8sy3pa696hpqnszimjl"; depends=[]; }; + fourDNData = derive2 { name="fourDNData"; version="1.4.0"; sha256="1lixqb8n99w0qwr6hi5sql2r84dnp4zc7lqd6lhj0mgpya85b5zr"; depends=[BiocFileCache GenomicRanges HiCExperiment IRanges S4Vectors]; }; + frmaExampleData = derive2 { name="frmaExampleData"; version="1.40.0"; sha256="1dgirbhamg53dmfwc76s5ivclxmy7sjhjm9crzwrj1bzl6056cr3"; depends=[]; }; + furrowSeg = derive2 { name="furrowSeg"; version="1.32.0"; sha256="125wyqi4h7kkrhbcn4gknwlw6panian2hfsapwyqfxz0mg6ssg5z"; depends=[abind dplyr EBImage locfit tiff]; }; + gDNAinRNAseqData = derive2 { name="gDNAinRNAseqData"; version="1.4.0"; sha256="0wpv9p96qxnk22p7ili8ic4gr8p3wb6jfn4v9f0d4kn385vvfwyp"; depends=[BiocGenerics ExperimentHub RCurl Rsamtools XML]; }; + gDRtestData = derive2 { name="gDRtestData"; version="1.2.0"; sha256="0kdlqbs5qj6svnhsrhnsd644kcxyd8haws5h4djm4gplyx6vwqyj"; depends=[checkmate data_table]; }; + gageData = derive2 { name="gageData"; version="2.42.0"; sha256="1kbs0fz1jnx3grd9mpclbahwbp3749ipwfs8ggl9299bhjrgh9i6"; depends=[]; }; + gaschYHS = derive2 { name="gaschYHS"; version="1.42.0"; sha256="01r25gx65a9lcjzbjm6gckzy3hyr70cxswxkvprsbphh7pkll3np"; depends=[Biobase]; }; + gcspikelite = derive2 { name="gcspikelite"; version="1.42.0"; sha256="0cphbkq13jknmzs6qyv3cj1m73a1wncnj7znjnymbc0ha7rwcd5i"; depends=[]; }; + geneLenDataBase = derive2 { name="geneLenDataBase"; version="1.40.1"; sha256="0c8f0sqgrg7rc2vs9id9xzbwwv3zhy6ylqiisji20rw9ipzgv7k8"; depends=[GenomicFeatures rtracklayer txdbmaker]; }; + genomationData = derive2 { name="genomationData"; version="1.36.0"; sha256="16mghhik2xzin14d7mqlwfy2dah3ccnga947z9id44vyz906wws7"; depends=[]; }; + golubEsets = derive2 { name="golubEsets"; version="1.46.0"; sha256="1rv5y7cj4rpdg8vl0qd3071d12rvgqcffqsf1gx8kmdgz13hi4gl"; depends=[Biobase]; }; + gpaExample = derive2 { name="gpaExample"; version="1.16.0"; sha256="0q87x5k8ql01k9m503k87wn5pkrygrilqrsb0aix7xjpxa8aia1n"; depends=[]; }; + grndata = derive2 { name="grndata"; version="1.36.0"; sha256="1qkxpljvm9sipphgjygnrynbslyv5rlpvfy34q6w1rqhf6qv0n89"; depends=[]; }; + h5vcData = derive2 { name="h5vcData"; version="2.24.0"; sha256="04ymiclfwwp68h8pzpxrfrb5x9njqknhyhihbcj4v51qzx0y4jid"; depends=[]; }; + hapmap100khind = derive2 { name="hapmap100khind"; version="1.46.0"; sha256="0a8j45fxr3sm4q689v29n9gj60g21pk3ixhv7s9plig12ma7nfnz"; depends=[]; }; + hapmap100kxba = derive2 { name="hapmap100kxba"; version="1.46.0"; sha256="1afvfh6mckyi575qlp579p1akya4q7h0c9zp28s7n5nyljmh572i"; depends=[]; }; + hapmap500knsp = derive2 { name="hapmap500knsp"; version="1.46.0"; sha256="0lbrn02lyca76xk2h2iddxpkvsj2kvz37m1dn0l5pwbz6igpllqp"; depends=[]; }; + hapmap500ksty = derive2 { name="hapmap500ksty"; version="1.46.0"; sha256="0lnzwdcjz5f9imqprkh9qxrakg8qdh3j83bq5qaaq54mdh76kd68"; depends=[]; }; + hapmapsnp5 = derive2 { name="hapmapsnp5"; version="1.46.0"; sha256="03pmlz3cskxf683dpdns258gh8rv33amzpvb9mabbg0jagg2b9lw"; depends=[]; }; + hapmapsnp6 = derive2 { name="hapmapsnp6"; version="1.46.0"; sha256="15npa8h6qpp1i0ir2y6knvzb5f4rn9zimyl6sw24ccqbvimjkf7f"; depends=[]; }; + harbChIP = derive2 { name="harbChIP"; version="1.42.0"; sha256="1pliyvn6g3gbkiinz4q24ajmq0apw035a2c9xq6b91ccm8m7ddrk"; depends=[Biobase Biostrings IRanges]; }; + healthyControlsPresenceChecker = derive2 { name="healthyControlsPresenceChecker"; version="1.8.0"; sha256="14gq24z99l04kcn13414zjn17184l3p5l6draxwy3820m9sijzgq"; depends=[geneExpressionFromGEO GEOquery magrittr xml2]; }; + healthyFlowData = derive2 { name="healthyFlowData"; version="1.42.0"; sha256="01hq1nchjyzps5nvsvpgxrw1vds92fv0sggzlls21ggrjhyrx8kp"; depends=[flowCore]; }; + hgu133abarcodevecs = derive2 { name="hgu133abarcodevecs"; version="1.42.0"; sha256="1p9l32lhk5cvqfgxkk3bdz4s9dcyczh9b0a8rvb2cf6zz0i3l6fh"; depends=[]; }; + hgu133plus2CellScore = derive2 { name="hgu133plus2CellScore"; version="1.24.0"; sha256="0akf6y1pwjiffhxgd2s01kmw4aylbfbh9hv8yyfvm3r72j07lbvs"; depends=[Biobase]; }; + hgu133plus2barcodevecs = derive2 { name="hgu133plus2barcodevecs"; version="1.42.0"; sha256="0d6jcyb1v58f1p76mng0l327v6i1cskrgcj4p2r9z2pjbgyicgq2"; depends=[]; }; + hgu2beta7 = derive2 { name="hgu2beta7"; version="1.44.0"; sha256="0wlkv4yppzg520zbhk7v19jfxbiran9di0bm10bfb9lizdszwd75"; depends=[]; }; + homosapienDEE2CellScore = derive2 { name="homosapienDEE2CellScore"; version="1.0.0"; sha256="1vwasylfqv4xgmhkzykdwhlxh0kk4pl4bcndx5dpn7i386zp6chs"; depends=[BiocGenerics DESeq2 ExperimentHub getDEE2 MatrixGenerics Rtsne S4Vectors SummarizedExperiment]; }; + humanStemCell = derive2 { name="humanStemCell"; version="0.44.0"; sha256="0yr4z1j4xaxaby3ka9k6h5bshzn78ymp0ic0ycblbl6zzr0vzym2"; depends=[Biobase hgu133plus2_db]; }; + imcdatasets = derive2 { name="imcdatasets"; version="1.12.0"; sha256="135sffkn322g6zp6wz6ri2cg4wj9pwadmv4b6zaaxwximpx5xy04"; depends=[cytomapper DelayedArray ExperimentHub HDF5Array S4Vectors SingleCellExperiment SpatialExperiment]; }; + kidpack = derive2 { name="kidpack"; version="1.46.0"; sha256="0802kn1n9ivjil19faphg4z4iy0y7n1hmixd9bkfv7livfl8yn0b"; depends=[Biobase]; }; + leeBamViews = derive2 { name="leeBamViews"; version="1.40.0"; sha256="15prksw8pi302i8qpw3skwljyj3hfm9wld2lzpcgz7nnpzrqm8bc"; depends=[Biobase BSgenome GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; }; + leukemiasEset = derive2 { name="leukemiasEset"; version="1.40.0"; sha256="0r5dmd9m8fcbdns3r1vsw4xmxdbjp5gf4klsb148rpgmp5avjar4"; depends=[Biobase]; }; + lumiBarnes = derive2 { name="lumiBarnes"; version="1.44.0"; sha256="0in8rkcg1r7mjq3fzhyc8446dc09b1mm371vd6l0x541sj7x4n50"; depends=[Biobase lumi]; }; + lungExpression = derive2 { name="lungExpression"; version="0.42.0"; sha256="1r4xn6r0vwnkfbi49gjrxgdscqdpwpfwzb61mrxa9m1hgjy1dr80"; depends=[Biobase]; }; + lydata = derive2 { name="lydata"; version="1.30.0"; sha256="1f13r5krfqc2f4gc03dxk8ajxlm62yxif03m0nx8lqxvijgm4abq"; depends=[]; }; + mCSEAdata = derive2 { name="mCSEAdata"; version="1.24.0"; sha256="0364bvsx286nsnyp5mh2i7i71dpdlpgn0907hnpxck1hcw19npnn"; depends=[GenomicRanges]; }; + macrophage = derive2 { name="macrophage"; version="1.20.0"; sha256="11ydl4srfxbcqnb42kwk783xd74231g6vgp1f0qs3hl8slc1hk1w"; depends=[]; }; + mammaPrintData = derive2 { name="mammaPrintData"; version="1.40.0"; sha256="1vna6vg7md9pl9hfrvbb4pi2rpnm0pm9l3ndh8ifdhqrz2vjhfpz"; depends=[]; }; + maqcExpression4plex = derive2 { name="maqcExpression4plex"; version="1.48.0"; sha256="086pkn4x1nr7qqhawhyxdcrh9pnsqdpfgy07zxyf1i2by3b7b0v9"; depends=[]; }; + marinerData = derive2 { name="marinerData"; version="1.4.0"; sha256="1blrqzi840vcvdslyxkljbc2ihbx7yvvfxmxcs2kq8590jagl425"; depends=[ExperimentHub]; }; + mcsurvdata = derive2 { name="mcsurvdata"; version="1.22.0"; sha256="1pf4vljmfbks31rdhb1088x2lyck5bj1a5ci1z6qam8yi4kzgh1y"; depends=[AnnotationHub Biobase ExperimentHub]; }; + metaMSdata = derive2 { name="metaMSdata"; version="1.40.0"; sha256="12x7p2jyzggjfb7v2ax9by5hly84jjkkm6fq3i2ycyryjl8f0p6s"; depends=[]; }; + methylclockData = derive2 { name="methylclockData"; version="1.12.0"; sha256="1bwrgib7k71i4i6iq4l71n0z9adq3bg9k8j10bpi79ygn9169np5"; depends=[ExperimentHub ExperimentHubData]; }; + miRNATarget = derive2 { name="miRNATarget"; version="1.42.0"; sha256="1l8k9j7gwmg5ml68j0rj903im8q74ksanzfarwcx0hdxx4srsv2j"; depends=[Biobase]; }; + miRcompData = derive2 { name="miRcompData"; version="1.34.0"; sha256="17cg4j5lgn5wf0dcrb71sqf8amkjql5zgvjr85szxlzimkjykfyd"; depends=[]; }; + microRNAome = derive2 { name="microRNAome"; version="1.26.0"; sha256="0ry0pi7gcdwgfij7sw96pv9krqyq1lx5n81c1prhla45q26w9zpc"; depends=[SummarizedExperiment]; }; + microbiomeDataSets = derive2 { name="microbiomeDataSets"; version="1.12.0"; sha256="0ng0sbdn3y2h7dyn42rq5ci12xx5y3hqb87n7xi7lc1gp1pcxcf2"; depends=[ape BiocGenerics Biostrings ExperimentHub MultiAssayExperiment SummarizedExperiment TreeSummarizedExperiment]; }; + minfiData = derive2 { name="minfiData"; version="0.50.0"; sha256="1myxv7cqh7d1rjav9qhwqsmw3s1xh3zm34vbxwprqaqg87dg4bw0"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; }; + minfiDataEPIC = derive2 { name="minfiDataEPIC"; version="1.30.0"; sha256="1sgcw9gdlgk6dyzw61c0k2q26w7vzbqzyrl5qimx466x76knz4hj"; depends=[IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest minfi]; }; + minionSummaryData = derive2 { name="minionSummaryData"; version="1.34.0"; sha256="0mmj48c1djl026g7ckn5k7shvyy7xa0fp7nsavm15a8l4blbq1ri"; depends=[]; }; + mosaicsExample = derive2 { name="mosaicsExample"; version="1.42.0"; sha256="0sy85jkl5z82a7y3fg8a1mfq5cpjq2c5arvwplz427rsi02ppqan"; depends=[]; }; + mouse4302barcodevecs = derive2 { name="mouse4302barcodevecs"; version="1.42.0"; sha256="1bdcfbjpz60fldj8xq3hwgvdqmv5axc8cl2l57i4xk4piggah22r"; depends=[]; }; + msPurityData = derive2 { name="msPurityData"; version="1.32.0"; sha256="0pbdx6pg3cdwx6qngn01w46bvvqv2hhyicgi39y182gbwliv0fxl"; depends=[]; }; + msd16s = derive2 { name="msd16s"; version="1.24.0"; sha256="16ska3qh5bav3y891gz805pj638j4kx73izv8krpqgpycin719ar"; depends=[Biobase metagenomeSeq]; }; + msdata = derive2 { name="msdata"; version="0.44.0"; sha256="0g7mlgks3nfnfipnybs7pvsnmrvmq8888g39badca8pi73q1cm25"; depends=[]; }; + msigdb = derive2 { name="msigdb"; version="1.12.0"; sha256="080wm9sjwqhaxqx1r3kly1bi1gvkssqpsadnvabx11w493356qr0"; depends=[AnnotationDbi AnnotationHub ExperimentHub GSEABase org_Hs_eg_db org_Mm_eg_db]; }; + msqc1 = derive2 { name="msqc1"; version="1.32.0"; sha256="1wac6i792ndmv98rb3k7pz07q4l830yhkfs89ahlcalrah6m9cld"; depends=[lattice]; }; + mtbls2 = derive2 { name="mtbls2"; version="1.34.0"; sha256="0bycprz32ihj7kzy5f31275sd4b855nd9vm34447x5y33wdiq9b9"; depends=[]; }; + muleaData = derive2 { name="muleaData"; version="1.0.0"; sha256="0n5q0whp2fad980b72b9z85swkm8dc2r888javkzhb5c9sajz1w0"; depends=[]; }; + multiWGCNAdata = derive2 { name="multiWGCNAdata"; version="1.2.0"; sha256="1hpm0hf8yh3308rlfcm5f9hi1mcwgcij1baikrx4nrwn7fgi30l3"; depends=[ExperimentHub]; }; + muscData = derive2 { name="muscData"; version="1.18.0"; sha256="1snpzvmxrpzspfl5gy18w2mcdpszq7wn2l3z1mbvjdp8ffh4qv00"; depends=[ExperimentHub SingleCellExperiment]; }; + mvoutData = derive2 { name="mvoutData"; version="1.40.0"; sha256="01rxr4867w2zcy4gmcg868g2xqal5vb4xw2izfmcwplxah5380wv"; depends=[affy Biobase lumi]; }; + nanotubes = derive2 { name="nanotubes"; version="1.20.0"; sha256="0gsgs0i3117753pxypr2q8pc3zc8bd3fkp5xj30jx142wvi4y0al"; depends=[]; }; + nullrangesData = derive2 { name="nullrangesData"; version="1.10.0"; sha256="099ynygy9ld7ckzh38rf5nglx70mjwha0jz3ngn85ncnaz64cw26"; depends=[ExperimentHub GenomicRanges InteractionSet]; }; + oct4 = derive2 { name="oct4"; version="1.20.0"; sha256="0q6q5zg33fxq9cjnxdbc53q4wqsqcgid8ax0z2b8sbyv86knj620"; depends=[]; }; + octad_db = derive2 { name="octad.db"; version="1.6.0"; sha256="1n8zwjhf7s61gaqr1zs5gvc5l3xsbzilj38lpsh8k80y175msgbx"; depends=[ExperimentHub]; }; + optimalFlowData = derive2 { name="optimalFlowData"; version="1.16.0"; sha256="0b5r3hqs2pnj2s9qizrqpkkidq3r5ig75rmk1ygsppad0dl98qyh"; depends=[]; }; + orthosData = derive2 { name="orthosData"; version="1.2.0"; sha256="000jqijl7mpp0qfgg0aqx7jzn5bviybp2ndxmikyn0rmcvi9057k"; depends=[AnnotationHub BiocFileCache ExperimentHub HDF5Array stringr SummarizedExperiment]; }; + pRolocdata = derive2 { name="pRolocdata"; version="1.42.0"; sha256="0drc8srg2frzjpq7j00pfr1371n0jiry5gz1rz2hbagcz2q51aad"; depends=[Biobase MSnbase]; }; + parathyroidSE = derive2 { name="parathyroidSE"; version="1.42.0"; sha256="183cyn1i0i2p8npajwmbwzr2ncrrzwgpvh8adhjxzrdqkn3qdnr5"; depends=[SummarizedExperiment]; }; + pasilla = derive2 { name="pasilla"; version="1.32.0"; sha256="0r5i64125qq5z4c8zliazsi68035d1bsz6ingzqdh37m8prdw1cr"; depends=[DEXSeq]; }; + pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.42.0"; sha256="0q0wawb4hj45lm9z8h0q905dvmx13x25cv64qmm1nf0342m8gccn"; depends=[]; }; + pcxnData = derive2 { name="pcxnData"; version="2.25.0"; sha256="1mlqkxlkqfb8x5jp2fdx5nfrpfh8g3lghfj6sqkaf958n5yl1dg3"; depends=[]; }; + pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.42.0"; sha256="17sf3x7mhkjk605hmc0idx1d3pbx49hyfaxzifkc6bq1mmq5113x"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pepDat = derive2 { name="pepDat"; version="1.24.0"; sha256="01svdmjhijbmjypp9hzninmagjl24zk4kjigmrjiasfski8yjln5"; depends=[GenomicRanges]; }; + plotgardenerData = derive2 { name="plotgardenerData"; version="1.10.0"; sha256="14y5hh4r7j7kkbh7kl6wwh6xyva9pbqxzz4ch7dp7p0kj5kgh52s"; depends=[]; }; + prebsdata = derive2 { name="prebsdata"; version="1.40.0"; sha256="0agdmcin4mqigrpm004wvaqd9ciy2kc7di1yiycgdnd4ccglhllk"; depends=[]; }; + preciseTADhub = derive2 { name="preciseTADhub"; version="1.12.0"; sha256="0449ppjh29rwykf5i2c8f8sfy9s87p2kxgvylfa016x3g2gbnygw"; depends=[ExperimentHub]; }; + prostateCancerCamcap = derive2 { name="prostateCancerCamcap"; version="1.32.0"; sha256="03pfci7cx5r2lagfzi0j8b2ry9s6c211qamfqlqrx5siw0yxllrx"; depends=[Biobase]; }; + prostateCancerGrasso = derive2 { name="prostateCancerGrasso"; version="1.32.0"; sha256="11sl00lfi85gpwh2619w3z54vb0mw05bwcgdblg1c6wnrn17qd9h"; depends=[Biobase]; }; + prostateCancerStockholm = derive2 { name="prostateCancerStockholm"; version="1.32.0"; sha256="02kcm3wvz4wrdnn4cfna67gqx7p8765j4j0cl7x08j7qjlnsnq2z"; depends=[Biobase]; }; + prostateCancerTaylor = derive2 { name="prostateCancerTaylor"; version="1.32.0"; sha256="1ynjyrcp7d8ywzlfkv2909r1l3ihap4yiamq0jrqa27xh6lvpqfd"; depends=[Biobase]; }; + prostateCancerVarambally = derive2 { name="prostateCancerVarambally"; version="1.32.0"; sha256="1f0wzm4hlax0dcx3ibssiq1nmli8zhrp7b2r1znjs38v2p5skx53"; depends=[Biobase]; }; + ptairData = derive2 { name="ptairData"; version="1.12.0"; sha256="1w7j8zx0x0kihsv295l389vlxii72z22gyi2mhdfviyay7g4n2gd"; depends=[rhdf5 signal]; }; + pumadata = derive2 { name="pumadata"; version="2.40.0"; sha256="0ryrlsfyc64kbcn6mhq5xv09n9dv58d6azhywx21kg01iayrmnvb"; depends=[Biobase oligo puma]; }; + qPLEXdata = derive2 { name="qPLEXdata"; version="1.22.0"; sha256="1a8mzbll0s9w82y4sy153jna6677sdpp3bfzs83qaqpnjymjzfpc"; depends=[dplyr knitr MSnbase qPLEXanalyzer]; }; + rRDPData = derive2 { name="rRDPData"; version="1.24.0"; sha256="030hnp9sghl0f2wfg243ll6myp9gr5zzbwlfzaz8m7q8xk2if363"; depends=[rRDP]; }; + raerdata = derive2 { name="raerdata"; version="1.2.0"; sha256="15j7sw3kvgqqb7m4y4kn40p8g8s1f204lfnb5zskkjfakj6c2j03"; depends=[BiocGenerics ExperimentHub Rsamtools rtracklayer SingleCellExperiment]; }; + rcellminerData = derive2 { name="rcellminerData"; version="2.26.0"; sha256="1al3v586q2ak77hjbl3xlvrxqs3xid8y06lf601c5diyrd7vp7r7"; depends=[Biobase]; }; + restfulSEData = derive2 { name="restfulSEData"; version="1.26.0"; sha256="17ia2d5g0zawfpcqvpncw05qshhn09p05j2frxmz0mwjfp7mya27"; depends=[DelayedArray ExperimentHub HDF5Array SummarizedExperiment]; }; + rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.42.0"; sha256="0s75faby72cv6i1y1mj5d3qfvfp6907jinnfm17zvgdvcl0xx06h"; depends=[]; }; + sampleClassifierData = derive2 { name="sampleClassifierData"; version="1.28.0"; sha256="0bjncqk3h11gcsg8zp64f22xjsbgr20dqangg7h84d9m0rr6x0kg"; depends=[SummarizedExperiment]; }; + scATAC_Explorer = derive2 { name="scATAC.Explorer"; version="1.10.0"; sha256="0s2w9b9bb1bzqnlhlrgvp17bifhryvymzaid02ypkqaql06d6nyx"; depends=[BiocFileCache data_table Matrix S4Vectors SingleCellExperiment]; }; + scMultiome = derive2 { name="scMultiome"; version="1.4.0"; sha256="1fiivxs35zanssfkjv83fa898fjr93xgq5g2i9m2qkv2pxqlyan8"; depends=[AnnotationHub AzureStor checkmate DelayedArray ExperimentHub GenomicRanges HDF5Array MultiAssayExperiment rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scRNAseq = derive2 { name="scRNAseq"; version="2.18.0"; sha256="0jsq037ba4xsb3bwwf021jw2hqv30vb5nrjag97xadx75z5fzqlr"; depends=[alabaster_base alabaster_matrix alabaster_sce AnnotationDbi AnnotationHub BiocGenerics DBI DelayedArray ensembldb ExperimentHub GenomicFeatures GenomicRanges gypsum jsonlite Matrix RSQLite S4Vectors SingleCellExperiment SparseArray SummarizedExperiment]; }; + scTHI_data = derive2 { name="scTHI.data"; version="1.16.0"; sha256="03zixwlainshb8q3jsb6w9vah790vq17p742fpa2h8f0vcamqxa4"; depends=[]; }; + scaeData = derive2 { name="scaeData"; version="1.0.0"; sha256="0ghd2qyc9kz2d0g0whdy7cpys7j265iq9w7a02mnfwk8s0vplrk5"; depends=[ExperimentHub]; }; + scanMiRData = derive2 { name="scanMiRData"; version="1.10.0"; sha256="1h7bla3l5mmydwz6pgq6ja560r02i741k0259f3a5lf07y4rdab6"; depends=[scanMiR]; }; + scpdata = derive2 { name="scpdata"; version="1.12.0"; sha256="1mn3a27wmdsn582v6ajavn2fxqqqlv79zyy40zfg6pnza19izpbx"; depends=[AnnotationHub ExperimentHub QFeatures S4Vectors SingleCellExperiment]; }; + seq2pathway_data = derive2 { name="seq2pathway.data"; version="1.36.0"; sha256="0i45qxvbirh4l048a2hzk9iahydsgk6az0yjlfsypa0zq6hcz3cj"; depends=[]; }; + seqc = derive2 { name="seqc"; version="1.38.0"; sha256="0g1zwzm38xqdpzfhpbwlw8zcdl8lvyd7pfncgwk7y50w1mblxqah"; depends=[Biobase]; }; + serumStimulation = derive2 { name="serumStimulation"; version="1.40.0"; sha256="1lkwx3gc7c6scznaf1z62szi4mb944dg1jprp8zlmm51a73w9kp9"; depends=[]; }; + sesameData = derive2 { name="sesameData"; version="1.22.0"; sha256="05k67isysszzfkkbi811dkab0cmxnwz81p2ldcqz3gsq5qin3p1g"; depends=[AnnotationHub ExperimentHub GenomeInfoDb GenomicRanges IRanges readr S4Vectors stringr]; }; + seventyGeneData = derive2 { name="seventyGeneData"; version="1.40.0"; sha256="0yy9pywbr5fjkjc2gaaf8cfw5q2barw1a3yin99a7sphq062lfvj"; depends=[]; }; + shinyMethylData = derive2 { name="shinyMethylData"; version="1.24.0"; sha256="17l63xmdi6zhaqggw45nhpiclag96xjbkngmcqhihfykkrgbb18p"; depends=[]; }; + signatureSearchData = derive2 { name="signatureSearchData"; version="1.18.0"; sha256="11y1dbixj9b91whzq4lrmad5f4f6gqdv70ar4rg20ql1699dx5l5"; depends=[affy Biobase dplyr ExperimentHub limma magrittr R_utils rhdf5]; }; + simpIntLists = derive2 { name="simpIntLists"; version="1.40.0"; sha256="03d7whna1h2ffgci060gqfdwbjwmjg6q3yfd8l6vc25kiblc4igp"; depends=[]; }; + smokingMouse = derive2 { name="smokingMouse"; version="1.2.0"; sha256="1z3kbmlqylmaingkcdm6wxlx848zipqfh6kha7f55s6aklgcv5d7"; depends=[]; }; + spatialDmelxsim = derive2 { name="spatialDmelxsim"; version="1.10.0"; sha256="172hgg2wxjc32950lga8fqwygd6x07i0ilsvfp46sd7nmysy6cpn"; depends=[ExperimentHub SummarizedExperiment]; }; + spatialLIBD = derive2 { name="spatialLIBD"; version="1.16.2"; sha256="0bbwh9mfz7iscv8a1jlc7g1c452hv4qr95hwv3z6h2mqf8pcr5g8"; depends=[AnnotationHub benchmarkme BiocFileCache BiocGenerics cowplot DT edgeR ExperimentHub fields GenomicRanges ggplot2 golem IRanges jsonlite limma magick Matrix MatrixGenerics paletteer plotly png RColorBrewer rlang rtracklayer S4Vectors scater scuttle sessioninfo shiny shinyWidgets SingleCellExperiment SpatialExperiment statmod SummarizedExperiment tibble viridisLite]; }; + spqnData = derive2 { name="spqnData"; version="1.16.0"; sha256="047dbhcfqs0zddmnfpabpjhym86m5zlxnwccidkx0b131wxb22gv"; depends=[SummarizedExperiment]; }; + stemHypoxia = derive2 { name="stemHypoxia"; version="1.40.0"; sha256="0i8rvz2l6hgzd4zcmfzszjck0riy2m34qf2nidrxx6bjza4iqwpy"; depends=[]; }; + synapterdata = derive2 { name="synapterdata"; version="1.42.0"; sha256="0p6rrnqvdifrajil2akjvrzjm1k7gyywspg5cb5p2k62lyz0f06k"; depends=[synapter]; }; + systemPipeRdata = derive2 { name="systemPipeRdata"; version="2.8.0"; sha256="131p4s5cgm75f32a5dzyj059aznxjcy76h7h8dbccblqlqxgx1ix"; depends=[BiocGenerics Biostrings jsonlite remotes]; }; + tartare = derive2 { name="tartare"; version="1.18.0"; sha256="1wxq6sfzdah29ql9q7w3d35x7bf1bh1417ih55rg07qbs8cnxb9v"; depends=[AnnotationHub ExperimentHub]; }; + timecoursedata = derive2 { name="timecoursedata"; version="1.14.0"; sha256="0wjfc5awj4spvwwj3mp1bn3dqngjdnfz7bnlv7azqxmnd4q72ckr"; depends=[SummarizedExperiment]; }; + tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.42.0"; sha256="0anb8n6kni2i56rhhd6wlvq7am6jifiqfmm6v54yh96i2m3gsbq9"; depends=[]; }; + tinesath1probe = derive2 { name="tinesath1probe"; version="1.42.0"; sha256="0jcjzgazj3z4ls2b0mhi15n1vh4adxv2ysm6x3r8w4a4hzm4gnmg"; depends=[AnnotationDbi]; }; + tissueTreg = derive2 { name="tissueTreg"; version="1.24.0"; sha256="0wv7hlq4v69gwypg9lvkcxf7w191iq8j5rzh2gqvg25ajxhm0bwl"; depends=[]; }; + tofsimsData = derive2 { name="tofsimsData"; version="1.32.0"; sha256="02svkikiw72lpnsm3w333py7gwc52qi3qina215rp7fknrsqrw07"; depends=[]; }; + topdownrdata = derive2 { name="topdownrdata"; version="1.26.0"; sha256="13vcis52fadfpahw31v2z3p2q47d4yp7yl719mibkwga9iyklgva"; depends=[topdownr]; }; + tuberculosis = derive2 { name="tuberculosis"; version="1.10.0"; sha256="1l9gm8jlvall905053mmbn0wd053ssnsxy74gza37w669il85awn"; depends=[AnnotationHub dplyr ExperimentHub magrittr purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; + tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.42.0"; sha256="01cgv28yyqjg8f86dskafb3xy4ylcl4schcad44f9jpvc6zk48qs"; depends=[Biobase]; }; + tximportData = derive2 { name="tximportData"; version="1.32.0"; sha256="15wy0dhs9sbz27ii64b4i0zxlsm6v75m2f32gisdy9f6gnbgwkjg"; depends=[]; }; + vulcandata = derive2 { name="vulcandata"; version="1.26.0"; sha256="13cdb630w1xy734h15dgpzzk64g1rpr5xwh9q2hvs1z3ljyws8qd"; depends=[]; }; + xcoredata = derive2 { name="xcoredata"; version="1.8.0"; sha256="0sn3h2c0h9jpdp17jcxskcqjy31vx6wz2d5xb98ag19cfbimv3nl"; depends=[ExperimentHub]; }; + yeastCC = derive2 { name="yeastCC"; version="1.44.0"; sha256="1y3k3dvxrv68pcsdqhyvhxvwnmhm0iv7yr3rc6b0gm8g2nv9kcqm"; depends=[Biobase]; }; + yeastExpData = derive2 { name="yeastExpData"; version="0.50.0"; sha256="1ila3h87j9l37nvwhabrayxawx3mcklhlr3y9cqzpwkg7iayrplf"; depends=[graph]; }; + yeastGSData = derive2 { name="yeastGSData"; version="0.42.0"; sha256="1m3hrjmibmp8zzcc6acg6m21zq83rpnclya4ivivj60nw6ardbkr"; depends=[]; }; + yeastNagalakshmi = derive2 { name="yeastNagalakshmi"; version="1.40.0"; sha256="16n48lcyl63cmlc796xizf19rmm5qmdic0msaadz12wh743phh3a"; depends=[]; }; + yeastRNASeq = derive2 { name="yeastRNASeq"; version="0.42.0"; sha256="1jk6451ypys3xskmlm6xpvjxxzrx1g0hnzfcsahf3gqgg63pfj7h"; depends=[]; }; + zebrafishRNASeq = derive2 { name="zebrafishRNASeq"; version="1.24.1"; sha256="0khmilw21jnq2ivl7bh7fwz9nxlphljl5fh4w28q9gzydrv0vxci"; depends=[]; }; ABAData = derive2 { name="ABAData"; version="1.24.0"; sha256="1wgniq7ibvjj6dx63ixr3i5yclqmg94qpifzfbzzn9yjj3wnikzr"; depends=[]; broken = true; }; - ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.38.0"; sha256="1hgc2a7wsbw5ivdjknv82p3pvznq29lm8g4fdxy6dyr781xghs0w"; depends=[affy hexbin limma qvalue statmod]; broken = true; }; + ChIC_data = derive2 { name="ChIC.data"; version="1.22.0"; sha256="1akqpqw9ydf23whr346psciyyp9c3r0rsas1rkdkf8g5wrcj9vhk"; depends=[caret genomeIntervals randomForest]; broken = true; }; DREAM4 = derive2 { name="DREAM4"; version="1.31.0"; sha256="11ypc84agvq0q0v7bk0b25cm48awxay5hhhjd95gw9s7jk196i2p"; depends=[SummarizedExperiment]; broken = true; }; MAQCsubsetAFX = derive2 { name="MAQCsubsetAFX"; version="1.30.0"; sha256="14mwg96g7aza81vc3hpmb41scmygl8vnsi6s8p48c8v92106asmb"; depends=[affy Biobase]; broken = true; }; + MAQCsubsetILM = derive2 { name="MAQCsubsetILM"; version="1.40.0"; sha256="1bb158bmy7195wnj0wap08g621xbzflvj30pv4l7mwc54lm1vqfx"; depends=[Biobase lumi]; broken = true; }; MIGSAdata = derive2 { name="MIGSAdata"; version="1.24.0"; sha256="1s7fyf8n86a3znacjjs0zf22amw4rlgnvw2idld0np0yz81ggzs2"; depends=[]; broken = true; }; MSstatsBioData = derive2 { name="MSstatsBioData"; version="1.13.0"; sha256="1jzypgfmd6d0fdj9ycp4jwihjpxyinr5kwi2x2dg2z6hvxx97gb8"; depends=[]; broken = true; }; - RLHub = derive2 { name="RLHub"; version="1.6.0"; sha256="1lx4w9m5ddzx3v4ky7yxiq7ydd0dl7xfh9fcmf53apc6fnql13h2"; depends=[AnnotationHub ExperimentHub]; broken = true; }; RNASeqRData = derive2 { name="RNASeqRData"; version="1.16.0"; sha256="17c5fvyqxdsg7wl0hy0i28z0kf2lmjg36lfrmsv51kzklsc6ykrp"; depends=[]; broken = true; }; SCATEData = derive2 { name="SCATEData"; version="1.10.0"; sha256="0p0y8mkcg99dpwvp7spxx047kyr7mdflnnlfpb4i232q0yxz2z03"; depends=[ExperimentHub GenomicAlignments GenomicRanges]; broken = true; }; alpineData = derive2 { name="alpineData"; version="1.26.0"; sha256="1337y1y8q5y8yh2r2bji8fz3nhcxbn5s6pfnnkb8kvg8r0avgmkz"; depends=[AnnotationHub ExperimentHub GenomicAlignments]; broken = true; }; brainImageRdata = derive2 { name="brainImageRdata"; version="1.12.0"; sha256="072x7yn1ambf6hfpir6qdxl8bybv64blpbi1jdp0bvqlk66zs7zv"; depends=[ExperimentHub]; broken = true; }; + ccTutorial = derive2 { name="ccTutorial"; version="1.40.0"; sha256="1rqblyk7389xqwzvib2xjyjrc8l3qd2g8z9vj96mrfyr8dpccjjs"; depends=[affy Biobase Ringo topGO]; broken = true; }; gatingMLData = derive2 { name="gatingMLData"; version="2.38.0"; sha256="1dhm48nrh1y0x6p50045cn6f21bg35i0b4z7bjymn9aw0n9r5fyk"; depends=[]; broken = true; }; + mAPKLData = derive2 { name="mAPKLData"; version="1.34.0"; sha256="0vhysi7wyw7d3vbq4qcq3i3ic953awppg2bix40ywz1459b5p43g"; depends=[]; broken = true; }; plasFIA = derive2 { name="plasFIA"; version="1.26.0"; sha256="0vbqjbfc75pb2gk49sl6aihmvcc38ylngyr1bgdvdxr0xh11imv0"; depends=[proFIA]; broken = true; }; ppiData = derive2 { name="ppiData"; version="0.34.0"; sha256="10xbp12wim5kj1h2vkxn9x22fd92s2038w653y81jwbh2hyidybf"; depends=[AnnotationDbi graph]; broken = true; }; pwrEWAS_data = derive2 { name="pwrEWAS.data"; version="1.14.0"; sha256="1bldyvjsv5wwzasg9sbsivyi7m2ypc17mqjglsl22fjkykm92h4s"; depends=[ExperimentHub]; broken = true; }; + seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.38.0"; sha256="0kzmn5hx8ag02pz8b78cq7dbalw2w60y441cjyyvxjgycwcfvmvj"; depends=[]; broken = true; }; + stjudem = derive2 { name="stjudem"; version="1.42.0"; sha256="0pcvvvaqalr5jklqy7vzxkp0cd9nj9dk941drgr7ndbqc2navz2c"; depends=[]; broken = true; }; tcgaWGBSData_hg19 = derive2 { name="tcgaWGBSData.hg19"; version="1.12.0"; sha256="1kmh4iyh2h7vc1mlwb3sridn4nwkqdschz5md5dk53mxkn2wxcmi"; depends=[bsseq ExperimentHub knitr]; broken = true; }; } diff --git a/pkgs/development/r-modules/bioc-packages.nix b/pkgs/development/r-modules/bioc-packages.nix index 982c6b793749b..e942433e9a421 100644 --- a/pkgs/development/r-modules/bioc-packages.nix +++ b/pkgs/development/r-modules/bioc-packages.nix @@ -4,2205 +4,2222 @@ # Rscript generate-r-packages.R bioc >new && mv new bioc-packages.nix { self, derive }: -let derive2 = derive { biocVersion = "3.18"; }; +let derive2 = derive { biocVersion = "3.19"; }; in with self; { - ABSSeq = derive2 { name="ABSSeq"; version="1.56.0"; sha256="0y8j66yargvipwxg2ffcs62idk5q5r8vracfldbd1x5rgq7lf6nq"; depends=[limma locfit]; }; - ABarray = derive2 { name="ABarray"; version="1.70.0"; sha256="0p9q2x6n6n1d4w2hfbhhj54qflc6rf1w1qm9p2zqv9fcrm3g153v"; depends=[Biobase multtest]; }; - ACE = derive2 { name="ACE"; version="1.20.0"; sha256="0ll0lksz6nzfj5ivmyrp5w24bhfl083amjpr0m8qlzpdw6k3wi98"; depends=[Biobase GenomicRanges ggplot2 QDNAseq]; }; - ACME = derive2 { name="ACME"; version="2.58.0"; sha256="0cy1f4ki4j7yxc9cws5s17ljd4ac0yxhijms0pm31im81qz2djax"; depends=[Biobase BiocGenerics]; }; - ADAM = derive2 { name="ADAM"; version="1.18.0"; sha256="0gz3mpkj1q4j7w08ylfzclpa6saxsz7wyp0cldllhxpcj9lxljs5"; depends=[dplyr DT GO_db KEGGREST knitr pbapply Rcpp stringr SummarizedExperiment]; }; - ADAMgui = derive2 { name="ADAMgui"; version="1.18.0"; sha256="10m5dplkzxsxm7dxcmybihv81yflm3f7q6fmgb1dvwr8lsn1dm03"; depends=[ADAM colorRamps data_table dplyr DT ggplot2 ggpubr ggrepel ggsignif GO_db gridExtra knitr RColorBrewer reshape2 shiny shinyjs stringi stringr testthat varhandle]; }; - ADImpute = derive2 { name="ADImpute"; version="1.12.0"; sha256="0299yyin2j8577db2w6mrxmsq68cjlzwyh7z1wvhbj0n1p75r871"; depends=[BiocParallel checkmate data_table DrImpute kernlab MASS Matrix rsvd S4Vectors SAVER SingleCellExperiment SummarizedExperiment]; }; - ADaCGH2 = derive2 { name="ADaCGH2"; version="2.42.0"; sha256="0lzgn4zqckv37jsgd1azvshblb38khrlcncm98g74qhkswqj5wx3"; depends=[aCGH bit cluster DNAcopy ff GLAD snapCGH tilingArray waveslim]; }; - AGDEX = derive2 { name="AGDEX"; version="1.50.0"; sha256="06z74p3khw3r8dnwrpyyikq3ifcdvffxgfwcic9j8vc9s8pf921s"; depends=[Biobase GSEABase]; }; - AHMassBank = derive2 { name="AHMassBank"; version="1.2.1"; sha256="1lkv6zkwgnyjpr2vqbmpbz79h6f42s3ksy0ix0hbxdi3aalgyfgf"; depends=[AnnotationHubData]; }; - AIMS = derive2 { name="AIMS"; version="1.34.0"; sha256="0fmzyd8vypcfadqfa8w11mxr12h4a9shgiqpi2n2y150fvhlqf6c"; depends=[Biobase e1071]; }; - ALDEx2 = derive2 { name="ALDEx2"; version="1.34.0"; sha256="0wchlw9dprw7vkw26h26ypx06xv2j0cxbidw61pcqaxmrrh14dhz"; depends=[BiocParallel directlabels GenomicRanges IRanges lattice latticeExtra multtest Rfast S4Vectors SummarizedExperiment zCompositions]; }; - AMARETTO = derive2 { name="AMARETTO"; version="1.18.0"; sha256="1h0ci2sak2x5dhcshmgk4hy53ggjvrz3kaj61m47w5fjkj0lz79s"; depends=[BiocFileCache callr circlize ComplexHeatmap curatedTCGAData doParallel dplyr DT foreach ggplot2 glmnet gridExtra httr impute knitr limma Matrix matrixStats MultiAssayExperiment Rcpp readr reshape2 rmarkdown tibble]; }; - AMOUNTAIN = derive2 { name="AMOUNTAIN"; version="1.28.0"; sha256="1c65vn2k3hzzymik9ia7nk32sf0hr83q27yzf561a1hgv3m67d65"; depends=[]; }; - ANCOMBC = derive2 { name="ANCOMBC"; version="2.4.0"; sha256="1m63k1b9xh5mv4zb5m9nlrdcqkh2h477x1zyfk8j89idcvk9jil7"; depends=[CVXR DescTools doParallel doRNG energy foreach gtools Hmisc lme4 lmerTest MASS Matrix mia multcomp nloptr Rdpack S4Vectors SingleCellExperiment SummarizedExperiment TreeSummarizedExperiment]; }; - ANF = derive2 { name="ANF"; version="1.24.1"; sha256="0yal8lbillhj3zi2rcdk7k9r748jxm3196z54y1674qxzpvp24rk"; depends=[Biobase igraph MASS RColorBrewer survival]; }; - APAlyzer = derive2 { name="APAlyzer"; version="1.16.0"; sha256="1jzl274ikk6xp0lq9lr8gfw6f58nn5zs9ifj5mgwsj2vf0ma4mzc"; depends=[DESeq2 dplyr GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel HybridMTest repmis Rsamtools Rsubread rtracklayer SummarizedExperiment tidyr VariantAnnotation]; }; - APL = derive2 { name="APL"; version="1.6.1"; sha256="0g5h2mcqvsgiy8l8vlbwm6cqnywyhyc2j2id6pw7xvzd1xm5gb8i"; depends=[ggplot2 ggrepel magrittr org_Hs_eg_db org_Mm_eg_db plotly reticulate rlang Seurat SingleCellExperiment SummarizedExperiment topGO viridisLite]; }; - ARRmNormalization = derive2 { name="ARRmNormalization"; version="1.42.0"; sha256="1fd1pfw2ggqb0k2npvibfy8liix57m01cxfxp10shvfbzjjy4wjm"; depends=[ARRmData]; }; - ASAFE = derive2 { name="ASAFE"; version="1.28.0"; sha256="13pn2s59npp8lhc2sk9sa7dq8fy6jlq22c71n3rcjgxrrh690nb8"; depends=[]; }; - ASEB = derive2 { name="ASEB"; version="1.46.3"; sha256="1da6ld3ij55l3saj05ink8i1f6gqwyrv896qh8g94dmh6vzn2xbr"; depends=[]; }; - ASGSCA = derive2 { name="ASGSCA"; version="1.36.0"; sha256="13nk19rccrp0xl1s5gjwydpl1ayc7zc2izjrij9iz7fh2r79gn7f"; depends=[MASS Matrix]; }; - ASICS = derive2 { name="ASICS"; version="2.18.1"; sha256="0sii6sg20l6mfm8cj8zas2dm3wq6fwcwanav6fl7wkv8msk02sxb"; depends=[BiocParallel ggplot2 glmnet gridExtra Matrix mvtnorm PepsNMR plyr quadprog ropls SummarizedExperiment zoo]; }; - ASSET = derive2 { name="ASSET"; version="2.20.0"; sha256="0mm15i59vsnz8zh2d10xnab3a6kq08hwd3pzm3r12g4wcrdsxfxc"; depends=[MASS msm rmeta]; }; - ASSIGN = derive2 { name="ASSIGN"; version="1.38.0"; sha256="15brzfi9ain84171c72w3hzpmjz93g57zz228cbxm3k2s9kn8h7w"; depends=[ggplot2 gplots msm Rlab sva yaml]; }; - ASURAT = derive2 { name="ASURAT"; version="1.6.0"; sha256="0lxl7wgkys6n6xrh2wcp0p2bf33qdd1f3px3nkzk0yk6dvz715v7"; depends=[circlize cluster ComplexHeatmap plot3D Rcpp S4Vectors SingleCellExperiment SummarizedExperiment]; }; - ASpli = derive2 { name="ASpli"; version="2.12.0"; sha256="0rj103vvff2c20r018491i71393x0idq22ri4zg3qibx2accd7jy"; depends=[AnnotationDbi BiocGenerics BiocStyle data_table DT edgeR GenomicAlignments GenomicFeatures GenomicRanges Gviz htmltools igraph IRanges limma MASS pbmcapply Rsamtools S4Vectors tidyr UpSetR]; }; - ATACCoGAPS = derive2 { name="ATACCoGAPS"; version="1.4.0"; sha256="1v9a9hv9s0iv542n4q7d03axf5vnaj3x75chw7f1w1fg1vgb5bna"; depends=[BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm10 chromVAR CoGAPS dplyr fgsea GeneOverlap GenomicFeatures GenomicRanges gplots gtools Homo_sapiens IRanges JASPAR2016 motifmatchr msigdbr Mus_musculus projectR rGREAT stringr TFBSTools tidyverse]; }; - ATACseqQC = derive2 { name="ATACseqQC"; version="1.26.0"; sha256="1b53rkhyqnyh5vangh3hy4yccx1yackwbv1pxdimbp840ji6d122"; depends=[BiocGenerics Biostrings BSgenome ChIPpeakAnno edgeR GenomeInfoDb GenomicAlignments GenomicRanges GenomicScores IRanges KernSmooth limma motifStack preseqR randomForest Rsamtools rtracklayer S4Vectors]; }; - ATACseqTFEA = derive2 { name="ATACseqTFEA"; version="1.4.0"; sha256="1cz2vhg1w62xb3vl7sqhwdzvf9ixv5685lrnp2l1m6xvg4q8wzjw"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 ggrepel IRanges limma Matrix motifmatchr pracma Rsamtools S4Vectors SummarizedExperiment TFBSTools]; }; - AUCell = derive2 { name="AUCell"; version="1.24.0"; sha256="1d1icbq8i7mwsc7lv9pn4r0vs7azx1lwng5p3ghnray1ygqclbi0"; depends=[BiocGenerics data_table DelayedArray DelayedMatrixStats GSEABase Matrix mixtools R_utils shiny SummarizedExperiment]; }; - AWFisher = derive2 { name="AWFisher"; version="1.16.0"; sha256="10c5qi040z2w46k7qdcd2yap11mzllllrbr0nx7gd9gfzwlx089s"; depends=[edgeR limma]; }; - AffiXcan = derive2 { name="AffiXcan"; version="1.20.0"; sha256="1f508sz5vsmmmvp2mcyd2l4hislg2xhnn11xxva010l3i7by8c2r"; depends=[BiocParallel crayon MultiAssayExperiment SummarizedExperiment]; }; - AffyRNADegradation = derive2 { name="AffyRNADegradation"; version="1.48.0"; sha256="0i7929cyqvbx81v1d629g53480m48cbdpxfv0k6lwjfzf4yvazhf"; depends=[affy]; }; - AgiMicroRna = derive2 { name="AgiMicroRna"; version="2.52.0"; sha256="0cimi60asz5mmrq2qmnyqq9x5yg14cc67j8135x9zlklblsfyf35"; depends=[affy affycoretools Biobase limma preprocessCore]; }; - AllelicImbalance = derive2 { name="AllelicImbalance"; version="1.40.0"; sha256="0p7l856a46zzla8brsg901pmh5738j63h7h7rn3da94ny8k417mf"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridExtra Gviz IRanges lattice latticeExtra nlme Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; }; - AlphaBeta = derive2 { name="AlphaBeta"; version="1.16.0"; sha256="0zja8mysw0ljkvk6vqdx4c9wpf45zs64iyazh90mlf6xhbrvqfvq"; depends=[BiocParallel data_table dplyr expm ggplot2 gtools igraph optimx plotly stringr]; }; - AlpsNMR = derive2 { name="AlpsNMR"; version="4.4.0"; sha256="0141kayx20mm8skqr2210bpl76ra560ik7gf71iar03r3izcfczq"; depends=[baseline BiocParallel cli dplyr fs future generics ggplot2 glue htmltools magrittr matrixStats mixOmics pcaPP purrr readxl reshape2 rlang rmarkdown scales signal speaq stringr tibble tidyr tidyselect vctrs]; }; - AnVIL = derive2 { name="AnVIL"; version="1.14.2"; sha256="1vfriymy1v3mxahfdf4sd6rawi0qy7vzxrymi852w49fmy54bgp7"; depends=[BiocManager dplyr DT futile_logger htmltools httr jsonlite miniUI rapiclient rlang shiny tibble tidyr tidyselect]; }; - AnVILBilling = derive2 { name="AnVILBilling"; version="1.12.0"; sha256="1b90q6nvf6mzq1r9r679b33k6pqywwnjwkfdhfc3kp5i0d3xfh4s"; depends=[bigrquery DBI dplyr DT ggplot2 lubridate magrittr plotly shiny shinytoastr]; }; - AnVILPublish = derive2 { name="AnVILPublish"; version="1.12.0"; sha256="0yk5v4863h58795apffj6hp6iikgw5jx220s9f3j2fvvdpv3z995"; depends=[AnVIL httr jsonlite readr rmarkdown whisker yaml]; }; - AnVILWorkflow = derive2 { name="AnVILWorkflow"; version="1.2.0"; sha256="15yvpmpkii030v13bixhdj4g8b1qwjn9cm8k4rbpz6iqngaa4w5i"; depends=[AnVIL httr jsonlite]; }; - Anaquin = derive2 { name="Anaquin"; version="2.26.0"; sha256="1f2xf1i9l1s7433mvqjsralpm77qg0m73dw1rq9jsxbpk1f502ld"; depends=[DESeq2 ggplot2 knitr locfit plyr qvalue ROCR]; }; - AneuFinder = derive2 { name="AneuFinder"; version="1.30.0"; sha256="0x7v60j1c1g12qlqxgshpmbnwzjbmlnkrfh60wl43inr0wyllq1l"; depends=[AneuFinderData bamsignals BiocGenerics Biostrings cowplot DNAcopy doParallel ecp foreach GenomeInfoDb GenomicAlignments GenomicRanges ggdendro ggplot2 ggrepel IRanges mclust reshape2 Rsamtools S4Vectors]; }; - AnnotationDbi = derive2 { name="AnnotationDbi"; version="1.64.1"; sha256="1bdr303a2z03c8vc8q95a4a4a8i956vimia5yik78yddd1ig9gq3"; depends=[Biobase BiocGenerics DBI IRanges KEGGREST RSQLite S4Vectors]; }; - AnnotationFilter = derive2 { name="AnnotationFilter"; version="1.26.0"; sha256="0cd2vcnx0pn5wba3x5q32vddjjp7fvix7yd7jrwv07a2fkv9c4p5"; depends=[GenomicRanges lazyeval]; }; - AnnotationForge = derive2 { name="AnnotationForge"; version="1.44.0"; sha256="0dbbg0wvk1ndv20d5j80waaz0z1bsp7y2k2m17jly4ax2hc5frc9"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl RSQLite S4Vectors XML]; }; - AnnotationHub = derive2 { name="AnnotationHub"; version="3.10.0"; sha256="1mx3vip1rx5lq0vnkxpmkyksnq4vygmww85vxq3spr0fah1pwnkr"; depends=[AnnotationDbi BiocFileCache BiocGenerics BiocManager BiocVersion curl dplyr httr interactiveDisplayBase rappdirs RSQLite S4Vectors yaml]; }; - AnnotationHubData = derive2 { name="AnnotationHubData"; version="1.32.1"; sha256="09x2njf32lvj2irpjffjn2bsh42zkchirb7779xfyh745iis57mm"; depends=[AnnotationDbi AnnotationForge AnnotationHub Biobase BiocCheck BiocGenerics BiocManager biocViews Biostrings DBI futile_logger GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges jsonlite OrganismDbi RCurl Rsamtools RSQLite rtracklayer S4Vectors XML]; }; - ArrayExpress = derive2 { name="ArrayExpress"; version="1.62.0"; sha256="0cnb6r6rqbz5qph32aa1mghr0w2rhl6znyiblj0cbkv45mx2k4jr"; depends=[Biobase httr jsonlite limma oligo rlang]; }; - AssessORF = derive2 { name="AssessORF"; version="1.20.0"; sha256="0v64d3nmvcj6bz8zplyqzslm7kz6j3y0nl316h76g094hify64lk"; depends=[Biostrings DECIPHER GenomicRanges IRanges]; }; - BADER = derive2 { name="BADER"; version="1.40.0"; sha256="0zmf7a7lwsnk9gcg48vmzdvfmzhvnbawwg77pb4gy3cw9sjdz5ym"; depends=[]; }; - BAGS = derive2 { name="BAGS"; version="2.42.0"; sha256="0356ragpcldr48yycqj91sn3bcqvvfp5spv2z02r8g6hs0dndwdh"; depends=[Biobase breastCancerVDX]; }; - BANDITS = derive2 { name="BANDITS"; version="1.18.1"; sha256="0y81m37c5irpaw9pfm5b672wk804n4x1g9g5pfh1dp7pggfwbf1z"; depends=[BiocParallel data_table doParallel doRNG DRIMSeq foreach ggplot2 MASS R_utils Rcpp RcppArmadillo]; }; - BASiCS = derive2 { name="BASiCS"; version="2.14.0"; sha256="0kf215n151sxphc5w9h4i2xsk7lmysi4abwcpyz4slbwhpki3ac8"; depends=[assertthat Biobase BiocGenerics BiocParallel coda cowplot ggExtra ggplot2 hexbin MASS Matrix matrixStats posterior Rcpp RcppArmadillo reshape2 S4Vectors scran scuttle SingleCellExperiment SummarizedExperiment viridis]; }; - BASiCStan = derive2 { name="BASiCStan"; version="1.4.0"; sha256="01pa2sjmn6asbchxm0gdb8nyzsc73pay26jpv6fnl3gijiwm2xii"; depends=[BASiCS BH glmGamPoi Rcpp RcppEigen RcppParallel rstan rstantools scran scuttle SingleCellExperiment StanHeaders SummarizedExperiment]; }; - BBCAnalyzer = derive2 { name="BBCAnalyzer"; version="1.32.0"; sha256="108jcgsf5hyj348y17hcw8m3zcfjgzpx8nz4n5jgxp2lgxjyizy1"; depends=[Biostrings GenomicRanges IRanges Rsamtools SummarizedExperiment VariantAnnotation]; }; - BCRANK = derive2 { name="BCRANK"; version="1.64.0"; sha256="1m1ccacryf8wjzp0d37n9n1kpa6734ddb8nvv1sy0sz5gplrars9"; depends=[Biostrings]; }; - BEARscc = derive2 { name="BEARscc"; version="1.22.0"; sha256="0lxnmfqnvkdvyhmpqx4nxr8swvsadfx98rpzfz5r6xdkd3alizv8"; depends=[data_table ggplot2 SingleCellExperiment]; }; - BEAT = derive2 { name="BEAT"; version="1.40.0"; sha256="1kxclpl92pvdxydginp6wj9kvrxy4sh7650fb6vm3cxsnzzbs9xs"; depends=[Biostrings BSgenome GenomicRanges ShortRead]; }; - BEclear = derive2 { name="BEclear"; version="2.18.0"; sha256="1a8jmlx17qcx9qzcaxbnlk6qji6hqxcnzmr8zvar9jrfhx0cv9x1"; depends=[abind BiocParallel data_table dixonTest futile_logger ids Matrix Rcpp Rdpack]; }; - BG2 = derive2 { name="BG2"; version="1.2.0"; sha256="1r4qvqgpjw760mnbcb5xas23mnbvy64098b81467fsc0cjwrps6w"; depends=[caret GA MASS Matrix memoise]; }; - BHC = derive2 { name="BHC"; version="1.54.0"; sha256="1m289q9bs7i7d15g5mzdmzw7yppnqspr8illkya8kxlv1i2sify1"; depends=[]; }; - BLMA = derive2 { name="BLMA"; version="1.26.0"; sha256="1avidkxgdm6klxwzyaaniff7ajbkj6aw5ypk3qk3zscj6rd5ark2"; depends=[Biobase graph GSA limma metafor PADOG ROntoTools]; }; - BOBaFIT = derive2 { name="BOBaFIT"; version="1.6.0"; sha256="1h9s0ff31glbbamw5pjyiv4m9v4pp7mm64mmdp55yqfrnhbgy6hi"; depends=[dplyr GenomicRanges ggbio ggforce ggplot2 magrittr NbClust plyranges stringr tidyr]; }; - BPRMeth = derive2 { name="BPRMeth"; version="1.28.0"; sha256="0ic9yh9r2wvrrjq82jivpfyav6ah2g2fk8pbfa86dapaq8lwvabf"; depends=[assertthat BiocStyle cowplot data_table doParallel e1071 earth foreach GenomicRanges ggplot2 IRanges kernlab magrittr MASS matrixcalc mvtnorm randomForest Rcpp RcppArmadillo S4Vectors truncnorm]; }; - BRAIN = derive2 { name="BRAIN"; version="1.48.0"; sha256="05s22lh1p4plb4n69ndbwhv0k86kwyg75sv9bxja4y1xnkidfq8f"; depends=[Biostrings lattice PolynomF]; }; - BRGenomics = derive2 { name="BRGenomics"; version="1.14.1"; sha256="09kpb9jn84np1z8k72ngsbd0xx6v0x3kcl738wizr64w0j9zhlla"; depends=[DESeq2 GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - BSgenome = derive2 { name="BSgenome"; version="1.70.2"; sha256="02qrqg7lfisj44gvlfn1gkhxxjqdh11q28inxggfpcda9b67j61d"; depends=[BiocGenerics BiocIO Biostrings GenomeInfoDb GenomicRanges IRanges matrixStats Rsamtools rtracklayer S4Vectors XVector]; }; - BSgenomeForge = derive2 { name="BSgenomeForge"; version="1.2.1"; sha256="0wgs8j7kr6cma3h7gw9sjdm9k8jmfa9yjkzp6hmrv1p7nm3cbian"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb IRanges rtracklayer S4Vectors]; }; - BUMHMM = derive2 { name="BUMHMM"; version="1.26.0"; sha256="0ap8z0rk2w6ja19md4fa4h8lv2gxz12k5a7r4s5chbf4f7k2a480"; depends=[Biostrings devtools gtools IRanges stringi SummarizedExperiment]; }; - BUS = derive2 { name="BUS"; version="1.58.0"; sha256="154fhml5x1j6yypazvjahzr9fhfqrwi3486x8bm3nqx9n4sfpn0v"; depends=[infotheo minet]; }; - BUScorrect = derive2 { name="BUScorrect"; version="1.20.0"; sha256="0l3hbx2j9cm73fvyam6bpjzikg4ai4n8rqwfwmpqifaqcmfd4qgf"; depends=[gplots SummarizedExperiment]; }; - BUSpaRse = derive2 { name="BUSpaRse"; version="1.16.1"; sha256="1wqc20vc3dk6a83p7i23w7vbjxr982f0gdk39vq9kyj57k7ya9sb"; depends=[AnnotationDbi AnnotationFilter BH BiocGenerics biomaRt Biostrings BSgenome dplyr ensembldb GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges magrittr Matrix plyranges Rcpp RcppArmadillo RcppProgress S4Vectors stringr tibble tidyr zeallot]; }; - BUSseq = derive2 { name="BUSseq"; version="1.8.0"; sha256="1pmi2mbnpdxp4q2kh0h68bjq6j0rrh8nnlxidfk92gw058vhbv60"; depends=[gplots S4Vectors SingleCellExperiment SummarizedExperiment]; }; - BaalChIP = derive2 { name="BaalChIP"; version="1.28.0"; sha256="0d08mp12lw4qdy7w7i474ywcy2zgv940nc44w0gbb9h9dfl22crv"; depends=[coda doBy doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges reshape2 Rsamtools scales]; }; - BadRegionFinder = derive2 { name="BadRegionFinder"; version="1.30.0"; sha256="17smlghl8s667n6cjx64mqli9drmv0pkq51mhjlyjy2v019im7l9"; depends=[biomaRt GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; - BaseSpaceR = derive2 { name="BaseSpaceR"; version="1.46.0"; sha256="1ldsgrhxb1nm8xj7mws461apjknp9c2bhq3738f63i2qj9g25j4g"; depends=[RCurl RJSONIO]; }; - Basic4Cseq = derive2 { name="Basic4Cseq"; version="1.38.0"; sha256="1vlrrkg885w77w34m2q8hngr95hhh5bkw9hrzyhnp39igjkcwqx4"; depends=[Biostrings BSgenome_Ecoli_NCBI_20080805 caTools GenomicAlignments GenomicRanges RCircos]; }; - BasicSTARRseq = derive2 { name="BasicSTARRseq"; version="1.30.0"; sha256="1dw6bv1qk2bn0l3m458sqgvm3s1karh4n3431pl7r0jj2r3mr6xa"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges S4Vectors]; }; - BatchQC = derive2 { name="BatchQC"; version="1.30.0"; sha256="1xfa4g32b7vzj2l8bv0fa1xb15vlk7x933g2wxx4qz78a2wkd6yq"; depends=[corpcor ggvis gplots heatmaply knitr limma Matrix matrixStats MCMCpack moments pander reshape2 rmarkdown shiny sva]; }; - BayesKnockdown = derive2 { name="BayesKnockdown"; version="1.28.0"; sha256="1argd4gfld2yb0vvpgb5k7m6agmi58712f6g5dj4gnb7kg4rp1l8"; depends=[Biobase]; }; - BayesSpace = derive2 { name="BayesSpace"; version="1.12.0"; sha256="1mqgsylnrvf197cin5zzihjv31bm2q0m5a612ncbglys6n1jd105"; depends=[assertthat BiocFileCache BiocSingular coda DirichletReg ggplot2 Matrix mclust purrr Rcpp RcppArmadillo RcppDist RcppProgress RCurl rhdf5 S4Vectors scales scater scran SingleCellExperiment SummarizedExperiment xgboost]; }; - BeadDataPackR = derive2 { name="BeadDataPackR"; version="1.54.0"; sha256="0sfpdpw6qqffzb9skzx9w1ggcixc3wry9c6f2kwpsykbdsnk90xz"; depends=[]; }; - BgeeCall = derive2 { name="BgeeCall"; version="1.18.1"; sha256="1ipypkyfqx6mahiwl0gzdsi7z9j9cm5rgfw4ybgh6blfq8kg9qyk"; depends=[biomaRt Biostrings data_table dplyr GenomicFeatures jsonlite rhdf5 rslurm rtracklayer sjmisc tximport]; }; - BgeeDB = derive2 { name="BgeeDB"; version="2.28.0"; sha256="1ahip21wihwg9yhq0ya1cyzd2cq423hz9pd6iql6y3yhld4j5rnn"; depends=[Biobase curl data_table digest dplyr graph R_utils RCurl RSQLite tidyr topGO]; }; - BiFET = derive2 { name="BiFET"; version="1.22.0"; sha256="056zqlql39q44snvx5nzc5snrihpr1kj3jdbpbb401hxi9r64f4r"; depends=[GenomicRanges poibin]; }; - BiGGR = derive2 { name="BiGGR"; version="1.38.0"; sha256="1pdsxkh9fkgn80f7p21902pb6xp2qafq10p29ifb55qwz8gma2ff"; depends=[hyperdraw hypergraph LIM limSolve rsbml stringr]; }; - BiRewire = derive2 { name="BiRewire"; version="3.34.0"; sha256="1h5pmd38b9zpbz1nngmk1s0cag4z0vx93yi2n7r85nca9z02cxad"; depends=[igraph Matrix Rtsne slam]; }; - BiSeq = derive2 { name="BiSeq"; version="1.42.0"; sha256="0ajx73bnx36cik70p4lbbnsr36ly88y57qqlp0mqbmn2mzqv5ajg"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; }; - BicARE = derive2 { name="BicARE"; version="1.60.0"; sha256="10inwxl1cmkdp8037wcwkj5wzxsrrcysxfbqhnkh7pzhzvwnzz9h"; depends=[Biobase GO_db GSEABase multtest]; }; - BindingSiteFinder = derive2 { name="BindingSiteFinder"; version="2.0.0"; sha256="1af4q8hzdjbi058a5l70jps5r7k3nccs8096gsfhgqfc9vanv6dy"; depends=[ComplexHeatmap dplyr forcats GenomeInfoDb GenomicFeatures GenomicRanges ggdist ggforce ggplot2 IRanges kableExtra lifecycle matrixStats plyr RColorBrewer rlang rtracklayer S4Vectors tibble tidyr]; }; - BioCartaImage = derive2 { name="BioCartaImage"; version="1.0.0"; sha256="0xp0znvlgh29f3y4n4gjc66c17jpifxk0ik49dqrdn6q1p2cbcv9"; depends=[magick]; }; - BioCor = derive2 { name="BioCor"; version="1.26.0"; sha256="0710dl05hs590fimp3dhg5hzvk6s79i0kwk6w6sj59pcawx2l6il"; depends=[BiocParallel GSEABase Matrix]; }; - BioMVCClass = derive2 { name="BioMVCClass"; version="1.70.0"; sha256="04ckv1y5iqawd0dvnn0bbpnmyys0ivcmf0my6dld3hib3idjzwfx"; depends=[Biobase graph MVCClass Rgraphviz]; }; - BioNAR = derive2 { name="BioNAR"; version="1.4.4"; sha256="1gnsg5ljvsf77rfidrcq42xprs3a7kj6nfx6nxixvd8hzr65myjd"; depends=[AnnotationDbi clusterCons cowplot data_table dplyr fgsea ggplot2 ggrepel GO_db igraph latex2exp Matrix minpack_lm org_Hs_eg_db poweRlaw Rdpack RSpectra rSpectral scales stringr viridis WGCNA]; }; - BioNERO = derive2 { name="BioNERO"; version="1.10.1"; sha256="0dxn4pijr6gsqybl8x3ix1xydizg7gzfp72risk37zc5i4xk2lca"; depends=[BiocParallel ComplexHeatmap dynamicTreeCut GENIE3 ggdendro ggnetwork ggplot2 ggrepel igraph intergraph matrixStats minet NetRep patchwork RColorBrewer reshape2 rlang SummarizedExperiment sva WGCNA]; }; - BioNet = derive2 { name="BioNet"; version="1.62.0"; sha256="122rj6rg4j9q9brhxyrbkc91fml3davk044s2yxwyjnwn2yjw0bq"; depends=[AnnotationDbi Biobase graph igraph RBGL]; }; - BioNetStat = derive2 { name="BioNetStat"; version="1.22.0"; sha256="1rbb36v64b9xbk2dsf6wsyrhwwbkysrj8fp1g22y3gisdk170sg8"; depends=[BiocParallel DT ggplot2 Hmisc igraph knitr markdown pathview pheatmap plyr psych RColorBrewer RJSONIO rmarkdown shiny shinyBS whisker yaml]; }; - BioQC = derive2 { name="BioQC"; version="1.30.0"; sha256="15kmg102259h2yl3b6ncq2p545kdac4hk4kwm1s5492y5rg7qkla"; depends=[Biobase edgeR Rcpp]; }; - BioTIP = derive2 { name="BioTIP"; version="1.16.0"; sha256="1bbjfv3bi20xlk8h7r5ipav6mfs27lmj0zjb5mk1gmp071dmnk0y"; depends=[cluster GenomicRanges igraph MASS psych scran stringr]; }; - Biobase = derive2 { name="Biobase"; version="2.62.0"; sha256="0znkawzr3hgbp2dkdk30ziqa6ylbq2nf0xmz4vi089cw9763lxgg"; depends=[BiocGenerics]; }; - BiocBaseUtils = derive2 { name="BiocBaseUtils"; version="1.4.0"; sha256="189jz8krhv0vdnk47m3cmy95zfg3l328w6dbhg6djvlkca17i275"; depends=[]; }; - BiocBook = derive2 { name="BiocBook"; version="1.0.0"; sha256="0lk4rm5q8q5xkiayg6chb7xdagjyz66wga9v3yl4nwangk0rfsil"; depends=[available BiocGenerics cli dplyr gert gh gitcreds glue httr purrr quarto renv rlang rprojroot stringr tibble usethis yaml]; }; - BiocCheck = derive2 { name="BiocCheck"; version="1.38.2"; sha256="1pkh7b27ynzpdfvyzqg36jm885r5lf2zw9rppdpj31rcv1640s0k"; depends=[BiocBaseUtils BiocFileCache BiocManager biocViews callr codetools graph httr2 knitr rvest stringdist]; }; - BiocFHIR = derive2 { name="BiocFHIR"; version="1.4.0"; sha256="1syp4yc7kdzywln1lscr5a6f20nl7jjw86sbxj2ci1f01wbiq63w"; depends=[BiocBaseUtils dplyr DT graph jsonlite shiny tidyr visNetwork]; }; - BiocFileCache = derive2 { name="BiocFileCache"; version="2.10.1"; sha256="044kh1rfgb608y2v4wzbzddirhw5crj3k6i28wr78qgnzqc89mdm"; depends=[curl DBI dbplyr dplyr filelock httr RSQLite]; }; - BiocGenerics = derive2 { name="BiocGenerics"; version="0.48.1"; sha256="0av525j9l0y3kjdy5wl6s35sh4nsabmdclq3687l5258kmq2dq8k"; depends=[]; }; - BiocHail = derive2 { name="BiocHail"; version="1.2.0"; sha256="02dss0xbrxl1l6py9xmag1f5vqr031n343jk2jcf4idn4zr02s6m"; depends=[basilisk BiocFileCache BiocGenerics dplyr reticulate]; }; - BiocHubsShiny = derive2 { name="BiocHubsShiny"; version="1.2.0"; sha256="1sz27svvpvcys4b9p53da1javkh5k9235pzsjvn2wx76gi6b1jkj"; depends=[AnnotationHub DT ExperimentHub htmlwidgets S4Vectors shiny shinyAce shinyjs shinythemes shinytoastr]; }; - BiocIO = derive2 { name="BiocIO"; version="1.12.0"; sha256="0bn2jknvj2ag1yv67kjqr7gsq771rmqv3my9njjkwcc9nzrxzhbp"; depends=[BiocGenerics S4Vectors]; }; - BiocNeighbors = derive2 { name="BiocNeighbors"; version="1.20.2"; sha256="0lvsw920i75di5pwq7yvk8wcxp01wrh7863xmwbrmk5jrvl3y4h4"; depends=[BiocParallel Matrix Rcpp RcppHNSW S4Vectors]; }; - BiocOncoTK = derive2 { name="BiocOncoTK"; version="1.22.2"; sha256="0yx32yj9bw78nhbv1yvgs26sxdmnava1a89g9hs4ai26c1hy150s"; depends=[bigrquery car ComplexHeatmap curatedTCGAData DBI dplyr DT GenomicFeatures GenomicRanges ggplot2 ggpubr graph httr IRanges magrittr MASS plyr Rgraphviz rjson S4Vectors scales shiny SummarizedExperiment]; }; - BiocParallel = derive2 { name="BiocParallel"; version="1.36.0"; sha256="19h80qf0zdxfg3pkcwwywh9gg0ymv92n51qpimnw4c3w5iaszy6b"; depends=[BH codetools cpp11 futile_logger snow]; }; - BiocPkgTools = derive2 { name="BiocPkgTools"; version="1.20.0"; sha256="0swi6xiads31xcndc2cfzh0ivdl0wc88s83s1p1gxh51rgmgkb14"; depends=[BiocFileCache BiocManager biocViews dplyr DT gh graph htmltools htmlwidgets httr igraph jsonlite magrittr RBGL readr rlang rorcid rvest stringr tibble xml2]; }; - BiocSet = derive2 { name="BiocSet"; version="1.16.1"; sha256="1qmi6b0hrfzj7ixcbxlsxyy3qg7d2qrq8jcjrjrgfyrgcfws46qd"; depends=[AnnotationDbi BiocIO dplyr KEGGREST ontologyIndex plyr rlang S4Vectors tibble tidyr]; }; - BiocSingular = derive2 { name="BiocSingular"; version="1.18.0"; sha256="0z1p02329wk2x058ij42q5pyvp0vhsihaxmizgzcj4sww6i28j33"; depends=[beachmat BiocGenerics BiocParallel DelayedArray irlba Matrix Rcpp rsvd S4Vectors ScaledMatrix]; }; - BiocSklearn = derive2 { name="BiocSklearn"; version="1.24.0"; sha256="01q9i3ncgi5ddkpvh47y061n8s7cvl19xlra6j591h0lxm65a6yx"; depends=[basilisk reticulate SummarizedExperiment]; }; - BiocStyle = derive2 { name="BiocStyle"; version="2.30.0"; sha256="17pkdi3vn62pw1nzmgz0i45czynqjchq078ij8v1xvflg6lf7flw"; depends=[BiocManager bookdown knitr rmarkdown yaml]; }; - BiocVersion = derive2 { name="BiocVersion"; version="3.18.1"; sha256="15wr651ylbx3am213dsy5kdr1xc8r5c9rfq5ydxzqlmxzjgymj55"; depends=[]; }; - BiocWorkflowTools = derive2 { name="BiocWorkflowTools"; version="1.28.0"; sha256="0mh7lsiprshq56ns3b8pbv1j1mjcbdzqydvli0ynmvf5smn2j4m5"; depends=[BiocStyle bookdown git2r httr knitr rmarkdown rstudioapi stringr usethis]; }; - Biostrings = derive2 { name="Biostrings"; version="2.70.3"; sha256="1704fn4dlswy5silmw2ri4yjbibqv249cnrb5mdgiwjh7l51w725"; depends=[BiocGenerics crayon GenomeInfoDb IRanges S4Vectors XVector]; }; - BloodGen3Module = derive2 { name="BloodGen3Module"; version="1.10.0"; sha256="0nzgqpgdjz0vqrijnwgpr4z41jwrf7bkrzfb1y6a04d3lrm6xmbc"; depends=[circlize ComplexHeatmap ExperimentHub ggplot2 gtools limma matrixStats preprocessCore randomcoloR reshape2 SummarizedExperiment testthat V8]; }; - BridgeDbR = derive2 { name="BridgeDbR"; version="2.12.0"; sha256="01y20lnna6fw6pgc1p0760kql120f0rjy9dicl97c8iv25m3kwzp"; depends=[curl rJava]; }; - BrowserViz = derive2 { name="BrowserViz"; version="2.24.0"; sha256="1m4wvpzfhcfpn4slms8584pv5wa467fd4avk7wk5my1ifnwwjvr5"; depends=[BiocGenerics httpuv jsonlite]; }; - BubbleTree = derive2 { name="BubbleTree"; version="2.32.0"; sha256="0a4jnchzxfvh6k9dlhlkf5lshqmj33w3lqjdyz414ka6jlh8jwpq"; depends=[Biobase BiocGenerics BiocStyle biovizBase dplyr e1071 GenomicRanges ggplot2 gridExtra gtable gtools IRanges limma magrittr plyr RColorBrewer WriteXLS]; }; - BufferedMatrix = derive2 { name="BufferedMatrix"; version="1.66.0"; sha256="1a3jrx2ym4ja6vhqnpm1w6c54df4y71qrcp91kkzc4g8k7ab8nhr"; depends=[]; }; - BufferedMatrixMethods = derive2 { name="BufferedMatrixMethods"; version="1.66.0"; sha256="023bpc3sakvxmdv1zxxwqwrgr8ap6p16jb15935v29qrwss643w9"; depends=[BufferedMatrix]; }; - BumpyMatrix = derive2 { name="BumpyMatrix"; version="1.10.0"; sha256="0ic87fjxwb39nmys09zb6k3ghcx8mmmj9pifljs10449i2lgzl2r"; depends=[IRanges Matrix S4Vectors]; }; - CAEN = derive2 { name="CAEN"; version="1.10.0"; sha256="0mw2vy7s9iihbzg6zfccn99607bkvqga0iynl1kgc1bwvl7zlam4"; depends=[PoiClaClu SummarizedExperiment]; }; - CAFE = derive2 { name="CAFE"; version="1.38.0"; sha256="1an1190g6b0xi36lmh8mnqas7bv5b9khcp4jsqnd04w22d4xf3jw"; depends=[affy annotate Biobase biovizBase GenomicRanges ggbio ggplot2 gridExtra IRanges]; }; - CAGEfightR = derive2 { name="CAGEfightR"; version="1.22.0"; sha256="0hbxrzsg4iqiwn74pha804xfy2ab9ijfxpv2g4ksqjv53pihkzc0"; depends=[assertthat BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicInteractions GenomicRanges Gviz InteractionSet IRanges Matrix pryr rtracklayer S4Vectors SummarizedExperiment]; }; - CAGEr = derive2 { name="CAGEr"; version="2.8.0"; sha256="131ab9dfckvw8mg22ics6mknfmspb1aaysmqgaxxc3rzf81d7w3q"; depends=[BiocGenerics BiocParallel BSgenome CAGEfightR data_table DelayedArray DelayedMatrixStats formula_tools GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges KernSmooth memoise MultiAssayExperiment plyr reshape2 Rsamtools rtracklayer S4Vectors som stringdist stringi SummarizedExperiment vegan VGAM]; }; - CAMERA = derive2 { name="CAMERA"; version="1.58.0"; sha256="1pa4ha4r8n3gpl0iqpzrax56nwcqf0i6mldsrlvn194024xma721"; depends=[Biobase graph Hmisc igraph RBGL xcms]; }; - CARNIVAL = derive2 { name="CARNIVAL"; version="2.12.0"; sha256="0yqanic5y2wy8p729iw8yb1b09chv2y15qfnlbkymq9j12m28v4v"; depends=[dplyr igraph lpSolve readr rjson rmarkdown stringr tibble tidyr]; }; - CATALYST = derive2 { name="CATALYST"; version="1.26.0"; sha256="0dfg9ib0imk8bmhycqrspnn8yvfdlchwvx39wgqxi5fb9zrppfz4"; depends=[circlize ComplexHeatmap ConsensusClusterPlus cowplot data_table dplyr drc flowCore FlowSOM ggplot2 ggrepel ggridges gridExtra Matrix matrixStats nnls purrr RColorBrewer reshape2 Rtsne S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; }; - CBEA = derive2 { name="CBEA"; version="1.2.0"; sha256="0w76bp2jhd4dyfrj66cmairx9k920n24prgy051m83xmda5l3v9b"; depends=[BiocParallel BiocSet dplyr fitdistrplus generics glue goftest lmom magrittr mixtools Rcpp rlang SummarizedExperiment tibble tidyr TreeSummarizedExperiment]; }; - CBNplot = derive2 { name="CBNplot"; version="1.2.1"; sha256="0f5wklg8ipfj7lb2sag0cg9yghl6m4jxyn834zwa52gk546fdcgd"; depends=[BiocFileCache bnlearn clusterProfiler depmap dplyr enrichplot ExperimentHub ggdist ggforce ggplot2 ggraph graphite graphlayouts igraph magrittr oaqc org_Hs_eg_db patchwork purrr pvclust reshape2 rlang Rmpfr stringr tidyr]; }; - CCPROMISE = derive2 { name="CCPROMISE"; version="1.28.0"; sha256="12fldnqhg1ds3frjh1vppaqgkf94v9q38hzc36jcq20gdin13i5s"; depends=[Biobase CCP GSEABase PROMISE]; }; - CCPlotR = derive2 { name="CCPlotR"; version="1.0.0"; sha256="1c393aa102w0qk97pb0mknf9lx6h1s47gj4zbckbdxsivxm5hzjp"; depends=[circlize ComplexHeatmap dplyr forcats ggbump ggh4x ggplot2 ggraph ggtext igraph patchwork plyr RColorBrewer scales scatterpie stringr tibble tidyr viridis]; }; - CDI = derive2 { name="CDI"; version="1.0.2"; sha256="0zxflvhqcgyjn1rxg4x1l7m30jw8mvml5v2j4zzqxixn63rmjmxg"; depends=[BiocParallel ggplot2 ggsci matrixStats reshape2 Seurat SeuratObject SingleCellExperiment SummarizedExperiment]; }; - CEMiTool = derive2 { name="CEMiTool"; version="1.26.1"; sha256="1ca5wlw5n0h9py82d9v60r8y985gg7jk9vvk6zdnbrrip5q0pdin"; depends=[clusterProfiler data_table dplyr DT fastcluster fgsea ggdendro ggplot2 ggpmisc ggrepel ggthemes gridExtra gtable htmltools igraph intergraph knitr matrixStats network pracma rmarkdown scales sna stringr WGCNA]; }; - CFAssay = derive2 { name="CFAssay"; version="1.36.0"; sha256="0fhkds47w2h2y9angk52w2iwj6agc870m79shvp2pkq1jl9ika24"; depends=[]; }; - CGEN = derive2 { name="CGEN"; version="3.38.0"; sha256="052yxwzk26kh2kmwdrvgj4nkxpmfqr3fiwcpqjy1r1swhgzxc29n"; depends=[mvtnorm survival]; }; - CGHbase = derive2 { name="CGHbase"; version="1.62.0"; sha256="1iw03gq1kvmn9a6h0kw389l9i7h99fbxcsag9f3gkfznjv0vp5k4"; depends=[Biobase marray]; }; - CGHcall = derive2 { name="CGHcall"; version="2.64.0"; sha256="1x2zfr40bm42zd1bljwpbz3cz1q23a3yy1g277lwsp78gxbn3zly"; depends=[Biobase CGHbase DNAcopy impute snowfall]; }; - CGHnormaliter = derive2 { name="CGHnormaliter"; version="1.56.0"; sha256="18wnrp689pi7llg23nwf52r0kbx9ziyhvqg0c2k47h7kkypwf1gn"; depends=[Biobase CGHbase CGHcall]; }; - CGHregions = derive2 { name="CGHregions"; version="1.60.0"; sha256="1dcwacqymv7c73xyw5l7nvvih9ilf5nqcy93xlk5bgvaf9irmgff"; depends=[Biobase CGHbase]; }; - CHETAH = derive2 { name="CHETAH"; version="1.18.0"; sha256="0y76gk17sjiw28f4cs670f3z3s94iyp293r4w79gs66jfmkhp5s6"; depends=[bioDist corrplot cowplot dendextend ggplot2 pheatmap plotly reshape2 S4Vectors shiny SingleCellExperiment SummarizedExperiment]; }; - CHRONOS = derive2 { name="CHRONOS"; version="1.30.0"; sha256="16r409ygnlrwd8aa274klvx2w2m2mh7mfjwfa5949753zgzn1mfz"; depends=[biomaRt circlize doParallel foreach graph igraph openxlsx RBGL RCurl rJava XML]; }; - CIMICE = derive2 { name="CIMICE"; version="1.10.0"; sha256="0n2bjyqwgpvl2b609v6qk84h4vc3476l71c0cslvkk9n78kpqvmk"; depends=[assertthat dplyr expm ggcorrplot ggplot2 ggraph glue igraph maftools Matrix networkD3 purrr tidygraph tidyr visNetwork]; }; - CINdex = derive2 { name="CINdex"; version="1.30.0"; sha256="15g2hmy136zj1fay6sj0qv4xkk2crhi16cxymd0b3i7r8qimv2vp"; depends=[bitops dplyr GenomeInfoDb GenomicRanges gplots gridExtra IRanges png S4Vectors som stringr]; }; - CMA = derive2 { name="CMA"; version="1.60.0"; sha256="04amq5xdml3zkkhfyrp7my4wnsihaq00hig95cnxrnn84vlbszbv"; depends=[Biobase]; }; - CNAnorm = derive2 { name="CNAnorm"; version="1.48.0"; sha256="01dr5yja660vq2akmb5gjgjsgqb9420vxhig7iqw2a2igwvk60h5"; depends=[DNAcopy]; }; - CNEr = derive2 { name="CNEr"; version="1.38.0"; sha256="0kpz15l3yz26s2kskxk4093313c7vwi131y24wbpcdahicpqys2m"; depends=[annotate BiocGenerics Biostrings DBI GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 GO_db IRanges KEGGREST poweRlaw R_utils readr reshape2 RSQLite rtracklayer S4Vectors XVector]; }; - CNORdt = derive2 { name="CNORdt"; version="1.44.0"; sha256="03kc07ji829drirgc1gfw2spkpj8rc16r0by8l392hqrdyl5xxwc"; depends=[abind CellNOptR]; }; - CNORfeeder = derive2 { name="CNORfeeder"; version="1.42.0"; sha256="0qg1wxyykdmi3dspxb4s9sb3rp0hzhqg1aq4fvwfk827740y1fb1"; depends=[CellNOptR graph]; }; - CNORfuzzy = derive2 { name="CNORfuzzy"; version="1.44.0"; sha256="1mbhr078i20rf3222lpr5ijiy07pp07c4larfnm0zrdv7wabij87"; depends=[CellNOptR nloptr]; }; - CNORode = derive2 { name="CNORode"; version="1.44.0"; sha256="0dmxhmvv2nyhwhjslwlhaf29fy5yl8f6q84cc2zaf41milx0avl7"; depends=[CellNOptR genalg knitr]; }; - CNTools = derive2 { name="CNTools"; version="1.58.0"; sha256="1jv46vrbqj2z6b6q5psbwh32sidaraklhnz6n3iqhmhs4dyf67g4"; depends=[genefilter]; }; - CNVMetrics = derive2 { name="CNVMetrics"; version="1.6.0"; sha256="16n44dc6dnzv9z6nag5zp6pajvwnr2plprcy73i6lwmmg7w89nwm"; depends=[BiocParallel GenomicRanges gridExtra IRanges magrittr pheatmap rBeta2009 S4Vectors]; }; - CNVPanelizer = derive2 { name="CNVPanelizer"; version="1.34.0"; sha256="15h8pkgp6g6sbiyk4q53s36w7szms66pa1hj2z32rhn4ys07indn"; depends=[BiocGenerics exomeCopy foreach GenomeInfoDb GenomicRanges ggplot2 gplots IRanges NOISeq openxlsx plyr reshape2 Rsamtools S4Vectors shiny shinyFiles shinyjs stringr testthat]; }; - CNVRanger = derive2 { name="CNVRanger"; version="1.18.1"; sha256="1wrq316nacvmd2hjqvx6iw3223x8hif17ka96raavpr43ss5slk2"; depends=[BiocGenerics BiocParallel data_table edgeR GDSArray gdsfmt GenomeInfoDb GenomicRanges IRanges lattice limma plyr qqman RaggedExperiment rappdirs reshape2 S4Vectors SNPRelate SummarizedExperiment]; }; - CNVfilteR = derive2 { name="CNVfilteR"; version="1.16.0"; sha256="1ggsy5l81w67544qg2w1i8k6ahyxmmml9xwl8216aqhhh5dz19ba"; depends=[assertthat Biostrings CopyNumberPlots GenomeInfoDb GenomicRanges IRanges karyoploteR pracma regioneR Rsamtools SummarizedExperiment VariantAnnotation]; }; - CNViz = derive2 { name="CNViz"; version="1.10.0"; sha256="0wxavpmjljvrw5vxwnylxw9q85p48qa8zyz4i2ac77gd34777dls"; depends=[CopyNumberPlots dplyr DT GenomicRanges karyoploteR magrittr plotly scales shiny]; }; - CNVrd2 = derive2 { name="CNVrd2"; version="1.40.0"; sha256="0a67rngcar0zlr71jzi6hfwk51x31x5aff9px1v6fmzmiazhppnn"; depends=[DNAcopy ggplot2 gridExtra IRanges rjags Rsamtools VariantAnnotation]; }; - COCOA = derive2 { name="COCOA"; version="2.16.0"; sha256="0j52y22q8kmqvji7lls6x767qb066a28xvpwlj473041xv0nyqjh"; depends=[Biobase BiocGenerics ComplexHeatmap data_table fitdistrplus GenomicRanges ggplot2 IRanges MIRA S4Vectors simpleCache tidyr]; }; - CODEX = derive2 { name="CODEX"; version="1.34.0"; sha256="0gliqm2xsh67b9pgfyxca6wqwbfwvwdn6wmj20js62wcf4ql1f2x"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb IRanges Rsamtools S4Vectors]; }; - COHCAP = derive2 { name="COHCAP"; version="1.48.0"; sha256="1czbmjmrldp4xwf2pi542aqxxgjg34bvky716fjf5y3zxp4j5pnd"; depends=[BH COHCAPanno gplots RColorBrewer Rcpp RcppArmadillo WriteXLS]; }; - COMPASS = derive2 { name="COMPASS"; version="1.40.0"; sha256="1a7f6jsp4r7z49mskbfdshngqwmjqs0bp3skbnbkzfqfb8mh7gl1"; depends=[abind BiocStyle clue coda data_table dplyr foreach knitr magrittr pdist plyr RColorBrewer Rcpp reshape2 rlang rmarkdown scales tidyr]; }; - CONFESS = derive2 { name="CONFESS"; version="1.30.0"; sha256="07llqgib7aqqn5m1zkmydh7cd9zpcskh87196079gssiyk8yd3w2"; depends=[changepoint cluster contrast data_table EBImage ecp flexmix flowClust flowCore flowMeans flowMerge flowPeaks foreach ggplot2 limma MASS moments outliers plotrix raster readbitmap reshape2 SamSPECTRAL waveslim wavethresh zoo]; }; - CONSTANd = derive2 { name="CONSTANd"; version="1.10.0"; sha256="0q0yskigdadjnhjfwsjmi84cp4w3jax7r3wddpswkahb42z86l6r"; depends=[]; }; - CORREP = derive2 { name="CORREP"; version="1.68.0"; sha256="1ida60gpbkr5iyn74y6df8gd0znjkzbidyi7sz4my47fw4j8wrin"; depends=[e1071]; }; - COSNet = derive2 { name="COSNet"; version="1.36.0"; sha256="1w6j2ybqvrh750af924pbw13x93fm8q035skbv088abpj8hxh72n"; depends=[]; }; - COTAN = derive2 { name="COTAN"; version="2.2.3"; sha256="12q5qcxa9qrykwqdl83c2bkg2y732qaw1fxb55fdh62l53xr2352"; depends=[assertthat BiocSingular circlize ComplexHeatmap dendextend dplyr ggplot2 ggrepel ggthemes Matrix parallelDist parallelly PCAtools plyr RColorBrewer Rfast rlang scales Seurat stringr tibble tidyr umap withr zeallot]; }; - CRISPRseek = derive2 { name="CRISPRseek"; version="1.42.0"; sha256="0dlcjqsl2agpd855jlnkdw8rljhc0f7lpn0qixy0vh2xyd38d3bv"; depends=[BiocGenerics Biostrings BSgenome data_table DelayedArray dplyr GenomeInfoDb GenomicRanges hash IRanges keras mltools reticulate rhdf5 S4Vectors seqinr XVector]; }; - CRImage = derive2 { name="CRImage"; version="1.50.0"; sha256="0yvl7lb6l6sy5i8s82j2gm79fi160dpvhvsg0p725a1d8jvgjxic"; depends=[aCGH DNAcopy e1071 EBImage foreach MASS sgeostat]; }; - CSAR = derive2 { name="CSAR"; version="1.54.0"; sha256="1i6mp2i1dx73pz4cibakdlffbwnagnm3jrx7v6dg5jdghqp9mnhn"; depends=[GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - CSSQ = derive2 { name="CSSQ"; version="1.14.0"; sha256="0n4ar1g9s127iqxxsh0f551y9rc9f9sa1y6lrwdbwyd94j44m3in"; depends=[GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - CTDquerier = derive2 { name="CTDquerier"; version="2.10.0"; sha256="1p00dxjkij8fp1x1ywp4s5gb1qqmxwpj790akf2ym9p3axcysmiq"; depends=[BiocFileCache ggplot2 gridExtra igraph RCurl S4Vectors stringdist stringr]; }; - CTSV = derive2 { name="CTSV"; version="1.4.0"; sha256="00nc3zk07719fz0s4ji8yp79jcs18qpdq99s5kjks2gsfcs31ay9"; depends=[BiocParallel knitr pscl qvalue SpatialExperiment SummarizedExperiment]; }; - CTdata = derive2 { name="CTdata"; version="1.2.0"; sha256="1gf5n85b9srdnj2nc0aqn8j6zjhhbvdn2k11im23f19vz6msvzw6"; depends=[ExperimentHub]; }; - CaDrA = derive2 { name="CaDrA"; version="1.0.2"; sha256="0y00xjnb8ljzm3mfyba3bpv0cq904d1n6z2avs1rfzpclrdns440"; depends=[doParallel ggplot2 gplots gtable MASS misc3d plyr ppcor R_cache reshape2 SummarizedExperiment]; }; - Cardinal = derive2 { name="Cardinal"; version="3.4.3"; sha256="0zn0as9nm4xl765qy76snl61vdzdl4ib5q2ca9bvg76m5km6hip1"; depends=[Biobase BiocGenerics BiocParallel CardinalIO EBImage irlba magrittr Matrix matter mclust nlme ProtGenerics S4Vectors signal viridisLite]; }; - CardinalIO = derive2 { name="CardinalIO"; version="1.0.0"; sha256="0krx56cs2b73wpkp99y019ix2maa44bwpxw5qx2i86qj3c89lmn6"; depends=[matter ontologyIndex S4Vectors]; }; - Category = derive2 { name="Category"; version="2.68.0"; sha256="19qyxqky1gsrjylmc2h0sndbqlk2ibrps7123gqwn19p8kg4nhf0"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI genefilter graph GSEABase Matrix RBGL]; }; - CausalR = derive2 { name="CausalR"; version="1.34.0"; sha256="18g4z9jwbxay29fyd25dhl7bbrns3sfbn2fczcwm8q6nwqdpj93v"; depends=[igraph]; }; - CeTF = derive2 { name="CeTF"; version="1.14.0"; sha256="11s0mdwn7d1k9kjwj4l3a2l3l5v1bihqfngfmg25sw7h57gacl6j"; depends=[circlize clusterProfiler ComplexHeatmap DESeq2 dplyr GenomicTools_fileHandler GGally ggnetwork ggplot2 ggpubr ggrepel igraph Matrix network Rcpp RcppArmadillo RCy3 S4Vectors SummarizedExperiment]; }; - CellBarcode = derive2 { name="CellBarcode"; version="1.8.1"; sha256="0h4mhzzrdcing9dxknhcrq2556ij68dq9hbx1sd226nrxmdw984v"; depends=[BH Biostrings Ckmeans_1d_dp data_table egg ggplot2 magrittr plyr Rcpp Rsamtools S4Vectors seqinr ShortRead stringr zlibbioc]; }; - CellBench = derive2 { name="CellBench"; version="1.18.0"; sha256="18q0qyc1k5d48vyhfzby8mz59ha5xl3mgflp6d7rdwv02340cipn"; depends=[assertthat BiocFileCache BiocGenerics BiocParallel dplyr glue lubridate magrittr memoise purrr rappdirs rlang SingleCellExperiment tibble tidyr tidyselect]; }; - CellMapper = derive2 { name="CellMapper"; version="1.28.0"; sha256="1ra9kw0waq5vn4hdzz3rpcy5vrd6k35m474r827a0j2avsmhgvwv"; depends=[S4Vectors]; }; - CellMixS = derive2 { name="CellMixS"; version="1.18.0"; sha256="0dimxhhk96lzrsi52ppgd7p6rcip81cjwzynlk6afgd2f0da45p4"; depends=[BiocGenerics BiocNeighbors BiocParallel cowplot dplyr ggplot2 ggridges kSamples magrittr purrr scater SingleCellExperiment SummarizedExperiment tidyr viridis]; }; - CellNOptR = derive2 { name="CellNOptR"; version="1.48.0"; sha256="015k6jn12svxfdxsw9zmdsjsa74yv8dqg0pp4pvdsqs9q13jlc14"; depends=[ggplot2 graph igraph RBGL RCurl Rgraphviz rmarkdown stringi stringr XML]; }; - CellScore = derive2 { name="CellScore"; version="1.22.0"; sha256="0sjh00gv71vnvwl9lvha2kpbqcfyvbgfxxdi5gwq9iln08mcl3sh"; depends=[Biobase gplots lsa RColorBrewer squash SummarizedExperiment]; }; - CellTrails = derive2 { name="CellTrails"; version="1.20.0"; sha256="1paqgvbkdmn2dacj392haassxhg3fx47srm6whgz3nlh26hvpimm"; depends=[Biobase BiocGenerics cba dendextend dtw EnvStats ggplot2 ggrepel igraph maptree mgcv reshape2 Rtsne SingleCellExperiment SummarizedExperiment]; }; - CellaRepertorium = derive2 { name="CellaRepertorium"; version="1.12.0"; sha256="0k9sxh0b9g2841zpkbmcc65v0kfyv1i6sxzdmbr49nzzm27xlbh2"; depends=[BiocGenerics Biostrings dplyr forcats generics glue Matrix progress purrr Rcpp reshape2 rlang S4Vectors stringr tibble tidyr]; }; - CelliD = derive2 { name="CelliD"; version="1.10.1"; sha256="13hwxhdp268h3n8d8wgr75i60apa9mama9bg049yz7c6mj5ixd1v"; depends=[BiocParallel data_table fastmatch fgsea ggplot2 glue irlba Matrix matrixStats pbapply Rcpp RcppArmadillo reticulate Rtsne scater Seurat SingleCellExperiment stringr SummarizedExperiment tictoc umap]; }; - Cepo = derive2 { name="Cepo"; version="1.8.0"; sha256="0s1zra4msgbp37r5lp0zs9j2aq054rcmrmhwi3liwp4wkvjbshw8"; depends=[BiocParallel DelayedArray DelayedMatrixStats dplyr ggplot2 GSEABase HDF5Array patchwork reshape2 rlang S4Vectors SingleCellExperiment SummarizedExperiment]; }; - CexoR = derive2 { name="CexoR"; version="1.40.0"; sha256="0rfb4vmgmk608l5kd9yxfny87krc2sc79rww0sh9cbcw5yicsr64"; depends=[genomation GenomeInfoDb GenomicRanges idr IRanges RColorBrewer Rsamtools rtracklayer S4Vectors]; }; - ChAMP = derive2 { name="ChAMP"; version="2.32.0"; sha256="1gdcdx34bxffd6ch354qx7yjngx3lj9chv5frwjyk56jq12vjjk7"; depends=[bumphunter ChAMPdata combinat dendextend DMRcate DNAcopy doParallel DT GenomicRanges ggplot2 globaltest goseq Hmisc Illumina450ProbeVariants_db IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest illuminaio impute isva kpmt limma marray matrixStats minfi missMethyl plotly plyr preprocessCore prettydoc quadprog qvalue RColorBrewer rmarkdown RPMM shiny shinythemes sva wateRmelon]; }; - ChIPComp = derive2 { name="ChIPComp"; version="1.32.0"; sha256="061d2z1rrcyad6cf19si14ab9a3dxdi17sfbkx3vx8kdsfs3djy9"; depends=[BiocGenerics BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges limma Rsamtools rtracklayer S4Vectors]; }; - ChIPQC = derive2 { name="ChIPQC"; version="1.38.0"; sha256="0a4kx2s2hyqs061550klfafkzk68563wbgyk4xihxaihdh03qghj"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors TxDb_Celegans_UCSC_ce6_ensGene TxDb_Dmelanogaster_UCSC_dm3_ensGene TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene TxDb_Rnorvegicus_UCSC_rn4_ensGene]; }; - ChIPXpress = derive2 { name="ChIPXpress"; version="1.46.0"; sha256="042jc6vz44pcr7pm44byk8mc7vzf7w42nnms9ckd9ayzwb0w8q25"; depends=[affy biganalytics bigmemory Biobase ChIPXpressData frma GEOquery]; }; - ChIPanalyser = derive2 { name="ChIPanalyser"; version="1.24.0"; sha256="1janbfc51pyrj89k10fmhxlx3zh8bscl83d0yj9pdpzkmsks248v"; depends=[BiocManager Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges RColorBrewer RcppRoll ROCR rtracklayer S4Vectors]; }; - ChIPexoQual = derive2 { name="ChIPexoQual"; version="1.26.0"; sha256="04dhkm8cq87x3c9f114z6q1pcw77xgs33rmhgzk4ajzxywhklq4j"; depends=[BiocParallel biovizBase broom data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 hexbin IRanges RColorBrewer rmarkdown Rsamtools S4Vectors scales viridis]; }; - ChIPpeakAnno = derive2 { name="ChIPpeakAnno"; version="3.36.1"; sha256="1jmg958v8ai9v3mpizj24nc0vsl564inndm0irflprs1ky90k8vl"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings DBI dplyr ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 graph InteractionSet IRanges KEGGREST matrixStats multtest RBGL regioneR Rsamtools rtracklayer S4Vectors SummarizedExperiment VennDiagram]; }; - ChIPseeker = derive2 { name="ChIPseeker"; version="1.38.0"; sha256="0bx85y5888w85miif73y0yd9j4kdmjn1cfck1xshnqnsrh7p3m50"; depends=[AnnotationDbi aplot BiocGenerics boot dplyr enrichplot GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gtools IRanges magrittr plotrix rtracklayer S4Vectors tibble TxDb_Hsapiens_UCSC_hg19_knownGene yulab_utils]; }; - ChIPseqR = derive2 { name="ChIPseqR"; version="1.56.0"; sha256="1m1x2v2wzmnqnl55wy2ky4f8p4fyynk1ffz82m5rnbm3265j6whn"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; }; - ChIPsim = derive2 { name="ChIPsim"; version="1.56.0"; sha256="0y5fy34rhxqbyhh27bkkzhgc49c2iy48qm4bggwzcwmrlcfh1ydx"; depends=[Biostrings IRanges ShortRead XVector]; }; - ChemmineOB = derive2 { name="ChemmineOB"; version="1.40.0"; sha256="0mfajzwzldmra6g5kni5yw7m2n719456p1vd3hxx2r7l1phdjixi"; depends=[BH BiocGenerics Rcpp zlibbioc]; }; - ChemmineR = derive2 { name="ChemmineR"; version="3.54.0"; sha256="1328mwmghflrvir1i3crlq8q36wq60x2an11saabg63hnx4paa81"; depends=[base64enc BH BiocGenerics DBI digest DT ggplot2 gridExtra jsonlite png Rcpp RCurl rjson rsvg stringi]; }; - Chicago = derive2 { name="Chicago"; version="1.30.0"; sha256="1mcpx785ag0jcsh08df34hx3wp55zd1vggnl3fflkinb78178n38"; depends=[data_table Delaporte Hmisc MASS matrixStats]; }; - ChromHeatMap = derive2 { name="ChromHeatMap"; version="1.56.0"; sha256="0zbpy4cxpgn6lcx413315jy00rmssdgk7rbyxr5sqraj82kamcbw"; depends=[annotate AnnotationDbi Biobase BiocGenerics GenomicRanges IRanges rtracklayer]; }; - ChromSCape = derive2 { name="ChromSCape"; version="1.12.0"; sha256="1cgq33shlx105h8xcjif6vz4qw91r1c82fw26nnrpbl5z070vq3l"; depends=[batchelor BiocParallel colorRamps colourpicker ConsensusClusterPlus coop DelayedArray dplyr DT edgeR forcats fs GenomicRanges gggenes ggplot2 ggrepel gridExtra IRanges irlba jsonlite kableExtra Matrix matrixTests msigdbr plotly qs qualV Rcpp rlist Rsamtools rtracklayer Rtsne S4Vectors scater scran shiny shinycssloaders shinydashboard shinydashboardPlus shinyFiles shinyhelper shinyjs shinyWidgets SingleCellExperiment stringdist stringr SummarizedExperiment tibble tidyr umap viridis]; }; - CircSeqAlignTk = derive2 { name="CircSeqAlignTk"; version="1.4.0"; sha256="0p129nsshb4xahicsyfbpc5w1v6n68xppfl39yxg61ndd15324rm"; depends=[BiocGenerics Biostrings dplyr ggplot2 IRanges magrittr Rbowtie2 Rhisat2 rlang Rsamtools S4Vectors ShortRead tidyr]; }; - CiteFuse = derive2 { name="CiteFuse"; version="1.14.0"; sha256="1jymchrl107b50q6kn5kfa3js9c8s667p2y0zh2q4y21b6n3v3id"; depends=[compositions cowplot dbscan ggplot2 ggraph ggridges gridExtra igraph Matrix mixtools pheatmap randomForest Rcpp reshape2 rhdf5 rlang Rtsne S4Vectors scales scran SingleCellExperiment SummarizedExperiment uwot]; }; - ClassifyR = derive2 { name="ClassifyR"; version="3.6.5"; sha256="1a5isn0hhmjp1a7jskwb1qg0lgaf17zlzc9rc60mzw0mixwmhqfi"; depends=[BiocParallel dplyr genefilter generics ggplot2 ggpubr ggupset MultiAssayExperiment ranger reshape2 rlang S4Vectors survival tidyr]; }; - Clomial = derive2 { name="Clomial"; version="1.38.0"; sha256="1z4cv68cdvqx1z8n8wgr74pdrbgqcm968qk7l8dv0za0164ala23"; depends=[matrixStats permute]; }; - CluMSID = derive2 { name="CluMSID"; version="1.18.0"; sha256="0iy53ccvwwgg58b16z0haw3yxcg62hfshx9dlkcxmr75i2v1zrpy"; depends=[ape Biobase dbscan GGally ggplot2 gplots MSnbase mzR network plotly RColorBrewer S4Vectors sna]; }; - ClustIRR = derive2 { name="ClustIRR"; version="1.0.0"; sha256="1rxq6pqpfxghf7n8l4qcq605iss9axk168bb8y8ycwfixs42fk7m"; depends=[future future_apply igraph stringdist visNetwork]; }; - ClusterJudge = derive2 { name="ClusterJudge"; version="1.24.0"; sha256="1g5r281dcqqr7rsk6xfj53fc9qqa15aiz4cxiyx92jq3a432kwl9"; depends=[httr infotheo jsonlite lattice latticeExtra]; }; - ClusterSignificance = derive2 { name="ClusterSignificance"; version="1.30.0"; sha256="1jyw2b6m9zvzsvd82iq75ifqfdl5xxbi4xqx5wn99pqwj72y4094"; depends=[pracma princurve RColorBrewer scatterplot3d]; }; - CoCiteStats = derive2 { name="CoCiteStats"; version="1.74.0"; sha256="18ddqwxj16wnwnvc187281a2vhxg63hm2rlq0dx0whzwmdrpm83l"; depends=[AnnotationDbi org_Hs_eg_db]; }; - CoGAPS = derive2 { name="CoGAPS"; version="3.22.0"; sha256="0zsilwawwngnl5cahvcmvhgkcnjqplr3b4711zkjdyhalzs4hr95"; depends=[BH BiocParallel biomaRt cluster dplyr fgsea forcats ggplot2 gplots msigdbr RColorBrewer Rcpp rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; }; - CoSIA = derive2 { name="CoSIA"; version="1.2.0"; sha256="14d7l88346wkh4fj9y4f2lywfqbawz60z86f6wm2r2vh8zhcbk8i"; depends=[AnnotationDbi annotationTools biomaRt dplyr ExperimentHub ggplot2 homologene magrittr org_Ce_eg_db org_Dm_eg_db org_Dr_eg_db org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db plotly RColorBrewer readr stringr tibble tidyr tidyselect]; }; - Cogito = derive2 { name="Cogito"; version="1.8.0"; sha256="1c576f0hcsqva4vj6h1kgahl2srh11dlsmnpvcpmw9pjm3q0j1dd"; depends=[AnnotationDbi BiocManager entropy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 jsonlite magrittr rmarkdown S4Vectors TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - ComPrAn = derive2 { name="ComPrAn"; version="1.10.0"; sha256="06waqsvxgp6aashqi74f66k0bpljm5x2xl7rmlbvzyyx51cd055k"; depends=[data_table dplyr DT forcats ggplot2 magrittr purrr RColorBrewer rio rlang scales shiny shinydashboard shinyjs stringr tibble tidyr VennDiagram]; }; - ComplexHeatmap = derive2 { name="ComplexHeatmap"; version="2.18.0"; sha256="0zzp0kci5daffpyv56advdcs05pz3nmjn07bmm7r3hwpk0nr3fcf"; depends=[circlize clue codetools colorspace digest doParallel foreach GetoptLong GlobalOptions IRanges matrixStats png RColorBrewer]; }; - CompoundDb = derive2 { name="CompoundDb"; version="1.6.0"; sha256="1fbh1wxrhsi759c5gh68grm4588vb2rgpvi5j891jlvi5wsm5g53"; depends=[AnnotationFilter Biobase BiocGenerics BiocParallel ChemmineR DBI dbplyr dplyr IRanges jsonlite MetaboCoreUtils MsCoreUtils ProtGenerics RSQLite S4Vectors Spectra tibble xml2]; }; - ConsensusClusterPlus = derive2 { name="ConsensusClusterPlus"; version="1.66.0"; sha256="11xcz9b4mg3inz8c8f2vckgai67s740qjyynjim4ahf9zd0j7rxs"; depends=[ALL Biobase cluster]; }; - CopyNumberPlots = derive2 { name="CopyNumberPlots"; version="1.18.0"; sha256="1sic65ws7bgww5zr56w9nan9wm60q238id6l0lhrzq6jadz6yc8s"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges karyoploteR regioneR rhdf5 Rsamtools SummarizedExperiment VariantAnnotation]; }; - CoreGx = derive2 { name="CoreGx"; version="2.6.1"; sha256="16i8xq98vg8xgscwj0w9bsq68vjmhsvwwdw66kcphvf3jjfmn1rv"; depends=[bench Biobase BiocGenerics BiocParallel BumpyMatrix checkmate crayon data_table glue lsa MatrixGenerics MultiAssayExperiment piano rlang S4Vectors SummarizedExperiment]; }; - Cormotif = derive2 { name="Cormotif"; version="1.48.0"; sha256="1abyr210zhl1nl3xi6ayqmyx454qrsqz9bkb8i05xg29yxyj3awv"; depends=[affy limma]; }; - CoverageView = derive2 { name="CoverageView"; version="1.40.0"; sha256="1sj1vr84nsbygkh5mmp7zm21zzk4zcw3bwcvcazmy54zs553blpf"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; - CrispRVariants = derive2 { name="CrispRVariants"; version="1.30.0"; sha256="1bsvl0sn2frfddvy32m8a1dh6p9vfa3q0kkl3jx0il1igl4q5dfw"; depends=[AnnotationDbi BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges reshape2 Rsamtools S4Vectors]; }; - CuratedAtlasQueryR = derive2 { name="CuratedAtlasQueryR"; version="1.0.1"; sha256="0iqrf3fdimvldzsvm6yg2c6g5bk50hh2yihzcfawwxnr6y2r39yn"; depends=[assertthat BiocGenerics cli DBI dbplyr dplyr duckdb glue HDF5Array httr purrr rlang S4Vectors Seurat SeuratObject SingleCellExperiment stringr SummarizedExperiment tibble]; }; - CyTOFpower = derive2 { name="CyTOFpower"; version="1.8.0"; sha256="0mv1467mbfa9k1dylbnls6ql2zi8ky1a9xqxjxih69d0ylpvbc9i"; depends=[CytoGLMM diffcyt dplyr DT ggplot2 magrittr rlang shiny shinyFeedback shinyjs shinyMatrix SummarizedExperiment tibble tidyr]; }; - CytoDx = derive2 { name="CytoDx"; version="1.22.0"; sha256="18sb7jjdpdy6sl7snjg8qxwd1mlis9wlcyrbzd41x5nrljvb3sqd"; depends=[doParallel dplyr flowCore glmnet rpart rpart_plot]; }; - CytoGLMM = derive2 { name="CytoGLMM"; version="1.10.0"; sha256="0fwjjhc2554qawnds3v75wycwhzinbnmq208k4mcmh6gpnkpsqdr"; depends=[BiocParallel caret cowplot doParallel dplyr factoextra flexmix ggplot2 ggrepel logging magrittr MASS Matrix mbest pheatmap RColorBrewer rlang stringr strucchange tibble tidyr]; }; - CytoML = derive2 { name="CytoML"; version="2.14.0"; sha256="0wq9ganas6l2jw8bnajr7vwli35kykpgv2lca4qh79nfgxlicff9"; depends=[BH Biobase cpp11 cytolib data_table dplyr flowCore flowWorkspace ggcyto graph jsonlite openCyto RBGL Rgraphviz Rhdf5lib RProtoBufLib tibble XML yaml]; }; - CytoPipeline = derive2 { name="CytoPipeline"; version="1.2.0"; sha256="14jnlglc9sd5sdrrl66vymjpww10ilq29ws6jc2gii19arxzdhl0"; depends=[BiocFileCache BiocParallel diagram flowAI flowCore ggcyto ggplot2 jsonlite PeacoQC rlang scales withr]; }; - CytoPipelineGUI = derive2 { name="CytoPipelineGUI"; version="1.0.0"; sha256="09fr9830kwa3jrlr8m2svn4v68dn5p00d1i7gl8vm0xj36q6ii8q"; depends=[CytoPipeline flowCore ggplot2 plotly shiny]; }; - DAMEfinder = derive2 { name="DAMEfinder"; version="1.14.0"; sha256="0mbm884dm30b4fwf3qr1w96j18dxdmr2bn11dw83hh0wrbhp8njm"; depends=[BiocGenerics Biostrings bumphunter cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges limma plyr readr reshape2 Rsamtools S4Vectors stringr SummarizedExperiment VariantAnnotation]; }; - DAPAR = derive2 { name="DAPAR"; version="1.34.6"; sha256="1nv0zd88frq3m228i91xqvcfck189l3grbpzgzah6b5psf60wyy4"; depends=[AnnotationDbi apcluster Biobase cluster clusterProfiler cp4p DAPARdata dendextend diptest doParallel dplyr factoextra FactoMineR forcats foreach ggplot2 gplots graph highcharter igraph imp4p impute knitr limma lme4 Matrix Mfuzz MSnbase multcomp norm openxlsx org_Sc_sgd_db preprocessCore purrr RColorBrewer readxl reshape2 scales stringr tibble tidyr tidyverse vioplot visNetwork vsn]; }; - DART = derive2 { name="DART"; version="1.50.0"; sha256="0730qa3viyhfgrl8p288isq4midmzb9nf8q60m5rrnk7maa2q8gf"; depends=[igraph]; }; - DCATS = derive2 { name="DCATS"; version="1.0.0"; sha256="0m77g0xa4v7vxgcxzj2g0nchii7a5cilbxs2ijp5m56wa2chi000"; depends=[aod e1071 matrixStats MCMCpack robustbase]; }; - DECIPHER = derive2 { name="DECIPHER"; version="2.30.0"; sha256="1ri8ldx3dqcpfvn3mz0022f77zi6ki04mh27qp132bbrjkj6zl79"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; }; - DEFormats = derive2 { name="DEFormats"; version="1.30.0"; sha256="138kcpk6mfk7rw3xnlhvkrcb3nlpq0j2pgkhhmqnglvl1rbipf2f"; depends=[checkmate data_table DESeq2 edgeR GenomicRanges S4Vectors SummarizedExperiment]; }; - DEGraph = derive2 { name="DEGraph"; version="1.54.0"; sha256="1cxyh9xsf1w4f1vk63vpxz3kgbrhb6xfrzj2s4vxb751621ybf57"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; }; - DEGreport = derive2 { name="DEGreport"; version="1.38.5"; sha256="0s0d40ac1da73w7j96lb20wchgs4c2svfrafsgi9mx5hiswfz25z"; depends=[Biobase BiocGenerics broom circlize cluster ComplexHeatmap ConsensusClusterPlus cowplot dendextend DESeq2 dplyr edgeR ggdendro ggplot2 ggrepel knitr logging magrittr psych RColorBrewer reshape rlang S4Vectors scales stringi stringr SummarizedExperiment tibble tidyr]; }; - DEGseq = derive2 { name="DEGseq"; version="1.56.1"; sha256="0yk5shwp78s01570rd08w3hpdhhj9lnq37rhy6rxxpj696srri4j"; depends=[qvalue]; }; - DELocal = derive2 { name="DELocal"; version="1.2.0"; sha256="1hghgqb3ipbb7kd21k2xinbwmzcgdj0ys8s5qn98lkm4cqjszvq7"; depends=[DESeq2 dplyr ggplot2 limma matrixStats reshape2 SummarizedExperiment]; }; - DEP = derive2 { name="DEP"; version="1.24.0"; sha256="1c5xj1w1gqginp5m4n4pbfkp2f5mqmc96l6d43agvam9g626r4b5"; depends=[assertthat circlize cluster ComplexHeatmap dplyr DT fdrtool ggplot2 ggrepel gridExtra imputeLCMD limma MSnbase purrr RColorBrewer readr rmarkdown shiny shinydashboard SummarizedExperiment tibble tidyr vsn]; }; - DEScan2 = derive2 { name="DEScan2"; version="1.22.0"; sha256="0nzmg43vczv0dg3jpms0xw2lj7jw44r0gicm13fdikb9859iiraj"; depends=[BiocGenerics BiocParallel ChIPpeakAnno data_table DelayedArray GenomeInfoDb GenomicAlignments GenomicRanges glue IRanges plyr Rcpp RcppArmadillo rtracklayer S4Vectors SummarizedExperiment]; }; - DESeq2 = derive2 { name="DESeq2"; version="1.42.1"; sha256="1s104b9k45b7kjrk56yw2yi4gi716nkcwnpqj4vj9w17xsb5m6zp"; depends=[Biobase BiocGenerics BiocParallel GenomicRanges ggplot2 IRanges locfit MatrixGenerics matrixStats Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; }; - DESpace = derive2 { name="DESpace"; version="1.2.1"; sha256="1397wn7wsbmyiz73q2vjwhjz3q8sxba4psd656dvk22095k3grbz"; depends=[assertthat BiocGenerics BiocParallel cowplot data_table dplyr edgeR ggforce ggnewscale ggplot2 ggpubr limma Matrix patchwork S4Vectors scales SpatialExperiment SummarizedExperiment]; }; - DEWSeq = derive2 { name="DEWSeq"; version="1.16.2"; sha256="0qhz616m69n72g6781zzn7ykbd03d8irnvcd3kg0aapzn725icy1"; depends=[BiocGenerics BiocParallel data_table DESeq2 GenomeInfoDb GenomicRanges R_utils S4Vectors SummarizedExperiment]; }; - DEXSeq = derive2 { name="DEXSeq"; version="1.48.0"; sha256="1q59agaidf0nkq599iz54a253sjxzillj39za86ihfj5xws24f8w"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools S4Vectors statmod stringr SummarizedExperiment]; }; - DEqMS = derive2 { name="DEqMS"; version="1.20.0"; sha256="1r4069jm5xjwgh7x4ysdmsablp38jbjj7yq1vab3r4zh1bpirjw5"; depends=[ggplot2 limma matrixStats]; }; - DEsingle = derive2 { name="DEsingle"; version="1.22.0"; sha256="0bfagw0nmzr7rfki2z78wgl5ikwzc143d3qlbcraci63lbm6ywb9"; depends=[bbmle BiocParallel gamlss MASS Matrix maxLik pscl VGAM]; }; - DEsubs = derive2 { name="DEsubs"; version="1.28.0"; sha256="1bdv9fbqgw9q5xc16xlac04j1xcmlqkp2703dg7cr9acy2dgh5q8"; depends=[circlize DESeq2 EBSeq edgeR ggplot2 graph igraph jsonlite limma locfit Matrix NBPSeq pheatmap RBGL]; }; - DExMA = derive2 { name="DExMA"; version="1.10.7"; sha256="12nvk3cfsxhkma9ypyndyd4i493x7h66nrx0lvniqs599a9x67yw"; depends=[Biobase bnstruct DExMAdata GEOquery impute limma pheatmap plyr RColorBrewer scales snpStats sva swamp]; }; - DFP = derive2 { name="DFP"; version="1.60.0"; sha256="1mnf92lg5daz4rf6ss2b3f923ybs6d3xyjz8plg0h8yfgm97yd0x"; depends=[Biobase]; }; - DIAlignR = derive2 { name="DIAlignR"; version="2.10.0"; sha256="1xqyksb8m67rwfxrz7gx5vjm0787ci94djpl236xf73a1xjp6xbq"; depends=[ape bit64 data_table DBI dplyr ggplot2 magrittr mzR phangorn pracma Rcpp RcppEigen reticulate rlang RMSNumpress RSQLite signal tidyr zoo]; }; - DMCFB = derive2 { name="DMCFB"; version="1.16.1"; sha256="0j00hnb30anbf7lh3qiv9d7ffxs4ipjdg3w1g0pmqigp1n5ig9vw"; depends=[arm benchmarkme BiocParallel data_table fastDummies GenomicRanges IRanges MASS matrixStats rtracklayer S4Vectors speedglm SummarizedExperiment tibble]; }; - DMCHMM = derive2 { name="DMCHMM"; version="1.24.0"; sha256="1kw1n6zfxiafmvk1m0ap8jwp1ffp719j8lqf0dgpkjnj4apkl75f"; depends=[BiocParallel calibrate fdrtool GenomicRanges IRanges multcomp rtracklayer S4Vectors SummarizedExperiment]; }; - DMRScan = derive2 { name="DMRScan"; version="1.24.0"; sha256="04w30bxgpxhm40sal9np23vlzh4x7pihnnmzdk0lkbm1z7a60mbd"; depends=[GenomeInfoDb GenomicRanges IRanges MASS Matrix mvtnorm RcppRoll]; }; - DMRcaller = derive2 { name="DMRcaller"; version="1.34.0"; sha256="1zw9as8dmcadjpdh59a5ap7bli8jp1cg1rafmlpkmiibwdgpbnfm"; depends=[betareg GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; }; - DMRcate = derive2 { name="DMRcate"; version="2.16.1"; sha256="19dxpmjjg8v2l71yjjlfj0ycvmhi9rk04q59nwjcp0aw8nvk6l3w"; depends=[biomaRt bsseq edgeR ExperimentHub GenomeInfoDb GenomicRanges Gviz IRanges limma minfi missMethyl plyr S4Vectors SummarizedExperiment]; }; - DNABarcodeCompatibility = derive2 { name="DNABarcodeCompatibility"; version="1.18.0"; sha256="0cj5d21l7zpp4sbkpxgph4q3n1pq3klg9xn8kn6hlm2h6i3j39g7"; depends=[DNABarcodes dplyr numbers purrr stringr tidyr]; }; - DNABarcodes = derive2 { name="DNABarcodes"; version="1.32.0"; sha256="12x4k55kshvwyzl83zkgkp0ylryr8wd3kz44ngp60k4pkwhkl9h9"; depends=[BH Matrix Rcpp]; }; - DNAcopy = derive2 { name="DNAcopy"; version="1.76.0"; sha256="0hyjin75v8l2a8qymsd6rjb8m7svv2q07s6z1dllqag09wja1yfz"; depends=[]; }; - DNAfusion = derive2 { name="DNAfusion"; version="1.4.0"; sha256="07921k8bjca4m0wfrn8q33pfvj5ivvmq6bvkwl1aq1n642k12zk8"; depends=[bamsignals BiocBaseUtils BiocGenerics GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools S4Vectors TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - DNAshapeR = derive2 { name="DNAshapeR"; version="1.30.0"; sha256="0jlfzq2na3hymqsi5ranj2aif7y48ry3zv7h8m9nzzq7sfr0vmnk"; depends=[Biostrings fields GenomicRanges Rcpp]; }; - DOSE = derive2 { name="DOSE"; version="3.28.2"; sha256="0kk4l8cxyvcq4cjjnb59zajf4ci0igml13582qqn8123cqkbf8pf"; depends=[AnnotationDbi BiocParallel fgsea ggplot2 GOSemSim HDO_db qvalue reshape2 yulab_utils]; }; - DRIMSeq = derive2 { name="DRIMSeq"; version="1.30.0"; sha256="1nf044cfqywfnglm081xbppamva87z2j2xz0f51z8mra11apj6i6"; depends=[BiocGenerics BiocParallel edgeR GenomicRanges ggplot2 IRanges limma MASS reshape2 S4Vectors]; }; - DSS = derive2 { name="DSS"; version="2.50.1"; sha256="1wjd428kz2w3n4ak13h3i1yknm03fh911jrcy2hkcip4z5cssla0"; depends=[Biobase BiocParallel bsseq]; }; - DTA = derive2 { name="DTA"; version="2.48.0"; sha256="1ymav0m09cmp54pl5ik67lwhn8k5fwvmplwvs2vy9falyqwrp1wj"; depends=[LSD scatterplot3d]; }; - DaMiRseq = derive2 { name="DaMiRseq"; version="2.14.0"; sha256="1mrslrvjf792dzajas4gfq2fir646lknrdg1wvhz513ww645kp38"; depends=[arm caret corrplot DESeq2 e1071 EDASeq edgeR FactoMineR FSelector ggplot2 Hmisc ineq kknn limma lubridate MASS pheatmap pls plsVarSel plyr randomForest RColorBrewer reshape2 RSNNS SummarizedExperiment sva]; }; - DeMAND = derive2 { name="DeMAND"; version="1.32.0"; sha256="05pczvfzakpbas3xh7igm1w27xf56mmpq72mav4pi5lhdj30w2hc"; depends=[KernSmooth]; }; - DeMixT = derive2 { name="DeMixT"; version="1.18.0"; sha256="0agnak3x4zm5qfp220wdg0w68l46m5awsxrjfh025mqk6mn6vvbn"; depends=[base64enc dendextend DSS ggplot2 KernSmooth knitr matrixcalc matrixStats psych Rcpp rmarkdown SummarizedExperiment sva truncdist]; }; - DeconRNASeq = derive2 { name="DeconRNASeq"; version="1.44.0"; sha256="1k5xrx97w9g0jfvjzawyfsqyz2fj9r463nj849djxgmcw8vp53vg"; depends=[ggplot2 limSolve pcaMethods]; }; - DeepBlueR = derive2 { name="DeepBlueR"; version="1.27.0"; sha256="03v1ag250zq8wj3fxnsg2ii8l93vq6dg9dxqyiqdjnbvxc0y26xg"; depends=[data_table diffr dplyr filehash foreach GenomeInfoDb GenomicRanges R_utils RCurl rjson rtracklayer settings stringr withr XML]; }; - DeepPINCS = derive2 { name="DeepPINCS"; version="1.10.0"; sha256="0xnqqv37h1k5ffhicqgxnqlwhi2cj8gakkgp04hlby4cjsfhd4a2"; depends=[CatEncoders keras matlab PRROC purrr rcdk reticulate stringdist tensorflow tokenizers ttgsea webchem]; }; - DegNorm = derive2 { name="DegNorm"; version="1.12.0"; sha256="1d2pdcfz4i94125cc35r0xsd1px718wh1910ixs0zlyzy032vpnz"; depends=[data_table doParallel foreach GenomicAlignments GenomicFeatures GenomicRanges ggplot2 heatmaply IRanges plotly plyr Rcpp RcppArmadillo Rsamtools S4Vectors viridis]; }; - DelayedArray = derive2 { name="DelayedArray"; version="0.28.0"; sha256="0mf30vdns64mpm11zcz9qx6nh5clr6krjvcmr7dqv2xg5ig0a1f7"; depends=[BiocGenerics IRanges Matrix MatrixGenerics S4Arrays S4Vectors SparseArray]; }; - DelayedDataFrame = derive2 { name="DelayedDataFrame"; version="1.18.0"; sha256="0hz1p2j3xqy08a6ja3sx4vp7yxbhxh29arh0ymnnvqnpf64lhxnb"; depends=[BiocGenerics DelayedArray S4Vectors]; }; - DelayedMatrixStats = derive2 { name="DelayedMatrixStats"; version="1.24.0"; sha256="18r5rfx46lac0kaakha4gqs4pj8vb39z0908gpclmp3ajca4hzb1"; depends=[DelayedArray IRanges Matrix MatrixGenerics S4Vectors sparseMatrixStats]; }; - DelayedRandomArray = derive2 { name="DelayedRandomArray"; version="1.10.0"; sha256="0ls464l4y8hzgxrjh1rxgzr3hzkc3m710m970lz83iyf7a6rsb6z"; depends=[BH DelayedArray dqrng Rcpp]; }; - DelayedTensor = derive2 { name="DelayedTensor"; version="1.8.0"; sha256="0fjvgvix0v5z8zkd0nzyvifkgq9p8706pk526ph42fsp7pfawxjf"; depends=[BiocSingular DelayedArray DelayedRandomArray einsum HDF5Array irlba Matrix rTensor]; }; - DepInfeR = derive2 { name="DepInfeR"; version="1.6.0"; sha256="0ad9q2k7vv11893kx8dxrx4ibixw5yfcyh7cxcf3x197gsik78mq"; depends=[BiocParallel glmnet matrixStats]; }; - DepecheR = derive2 { name="DepecheR"; version="1.18.0"; sha256="1b3c1wg5xnhh4bdcjls26j6nsp0vx1g5y3grqv7x4ds01vmh3q2w"; depends=[beanplot collapse doSNOW dplyr FNN foreach ggplot2 gmodels gplots MASS matrixStats mixOmics moments Rcpp RcppEigen reshape2 robustbase viridis]; }; - DiffBind = derive2 { name="DiffBind"; version="3.12.0"; sha256="1nlcx4fl1cpcg38cn9p55f75bv6pcg6h2jv4z94g2b7g1gwjd686"; depends=[amap apeglm ashr BiocParallel DESeq2 dplyr GenomicAlignments GenomicRanges ggplot2 ggrepel gplots GreyListChIP IRanges lattice limma locfit RColorBrewer Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment systemPipeR]; }; - DiffLogo = derive2 { name="DiffLogo"; version="2.26.0"; sha256="1il66knfk9b6a0n4zray6zzm49xzywi1snzb88d04mn0qi387nik"; depends=[cba]; }; - DifferentialRegulation = derive2 { name="DifferentialRegulation"; version="2.0.3"; sha256="04dg67z5s37618sip5wfawvhp3lavnnids69c0ff5l2bh7v5gm43"; depends=[BANDITS data_table doParallel doRNG foreach ggplot2 gridExtra MASS Matrix Rcpp RcppArmadillo SingleCellExperiment SummarizedExperiment tximport]; }; - Dino = derive2 { name="Dino"; version="1.8.0"; sha256="1px8ahrw3p7p21nmkjk0m3d0msifnsmxz17p4qqfjbfyx8j8y9yf"; depends=[BiocParallel BiocSingular Matrix matrixStats S4Vectors scran Seurat SingleCellExperiment SummarizedExperiment]; }; - Director = derive2 { name="Director"; version="1.28.0"; sha256="0q32s05xjksjbawd5kdh8hdhm0wdr9pg7crk0ip56f549rm7wqir"; depends=[htmltools]; }; - DirichletMultinomial = derive2 { name="DirichletMultinomial"; version="1.44.0"; sha256="1rvic3acrf4qdag423f8xa6bnqrqr31vj7k4l7a5kzf1fjm359wy"; depends=[BiocGenerics IRanges S4Vectors]; }; - DiscoRhythm = derive2 { name="DiscoRhythm"; version="1.18.0"; sha256="0vv2bhv081qm30iwf7mb23mzyxkmpr7qpxji8568jhxiqxx8xsyg"; depends=[BiocGenerics BiocStyle broom data_table dplyr DT ggExtra ggplot2 gridExtra heatmaply kableExtra knitr magick matrixStats matrixTests MetaCycle plotly reshape2 rmarkdown S4Vectors shiny shinyBS shinycssloaders shinydashboard shinyjs SummarizedExperiment UpSetR VennDiagram viridis zip]; }; - DominoEffect = derive2 { name="DominoEffect"; version="1.22.0"; sha256="00a7rc3q1pk626n5bk1f6ry9b7m44f5g5r29l2v8w7s8r3zfqvzh"; depends=[AnnotationDbi biomaRt Biostrings data_table GenomeInfoDb GenomicRanges IRanges SummarizedExperiment VariantAnnotation]; }; - Doscheda = derive2 { name="Doscheda"; version="1.24.0"; sha256="1hdqh4br4r57haw2zm4svv2akh0adfcb4lx2zichj0iv88sjnzl1"; depends=[affy calibrate corrgram drc DT ggplot2 gridExtra httr jsonlite limma matrixStats prodlim readxl reshape2 shiny shinydashboard stringr vsn]; }; - DriverNet = derive2 { name="DriverNet"; version="1.42.0"; sha256="1wna2jpilb3lhrz2f5py32ixm6wmda68a0abkc375dl92mxivfpf"; depends=[]; }; - DropletUtils = derive2 { name="DropletUtils"; version="1.22.0"; sha256="0bnxk72a0ygh4nqwyjzzi79zc4md8pwk0pr6jn43in0wdk054wf6"; depends=[beachmat BH BiocGenerics BiocParallel DelayedArray DelayedMatrixStats dqrng edgeR GenomicRanges HDF5Array IRanges Matrix R_utils Rcpp rhdf5 Rhdf5lib S4Vectors scuttle SingleCellExperiment SummarizedExperiment]; }; - DrugVsDisease = derive2 { name="DrugVsDisease"; version="2.44.0"; sha256="1g9i9r5bxvq1kk7vqx5jv4b61svxc1w0kh0fkjj3hbv8b1rh7aar"; depends=[affy annotate ArrayExpress BiocGenerics biomaRt cMap2data DrugVsDiseasedata GEOquery hgu133a_db hgu133a2_db hgu133plus2_db limma qvalue RUnit xtable]; }; - Dune = derive2 { name="Dune"; version="1.14.0"; sha256="1k0lp6sv8sml55dmhlzs4jnwvglc6dba7sn7w4j5h96d5bzav184"; depends=[aricode BiocParallel dplyr gganimate ggplot2 magrittr purrr RColorBrewer SummarizedExperiment tidyr]; }; - DynDoc = derive2 { name="DynDoc"; version="1.80.0"; sha256="0d2axaszy7rpi47yg4vhd1z70m53nx40znapgg5pq6ahrx7if5f1"; depends=[]; }; - EBImage = derive2 { name="EBImage"; version="4.44.0"; sha256="0jdi5cn4v5ll43xb3l6sy062snd5p9n2nrryc5aqd2ki18mdmghy"; depends=[abind BiocGenerics fftwtools htmltools htmlwidgets jpeg locfit png RCurl tiff]; }; - EBSEA = derive2 { name="EBSEA"; version="1.30.0"; sha256="1yasczqxx8vvh2h3nlnx99y0yyyyvv4qyfahs9c90yl5gk9xhwx3"; depends=[DESeq2 EmpiricalBrownsMethod]; }; - EBSeq = derive2 { name="EBSeq"; version="2.0.0"; sha256="07x9fh8akgiixsv1xddkvs2q8xxfsibas01kdx0kw6wak3nihn4w"; depends=[BH blockmodeling gplots Rcpp RcppEigen testthat]; }; - EBSeqHMM = derive2 { name="EBSeqHMM"; version="1.35.0"; sha256="1vgpda6h9caq67iqdd88mrhq8502jc056zf8fgwfgd8z9cayhsdn"; depends=[EBSeq]; }; - EBarrays = derive2 { name="EBarrays"; version="2.66.0"; sha256="1m8dy1lmx9m8p5jjk0i7yllb4pvq77kynszk1nz8cc1niz6xs47q"; depends=[Biobase cluster lattice]; }; - EBcoexpress = derive2 { name="EBcoexpress"; version="1.46.0"; sha256="0d8y193wpg8zi627bwl6dqbk3fdclfb8v9vsx9c0d6r1qldyrvqr"; depends=[EBarrays mclust minqa]; }; - EDASeq = derive2 { name="EDASeq"; version="2.36.0"; sha256="0xvi5mynkf1n74bn2k6gxmyhp1piwzsljd37biibdfzy14r1ir08"; depends=[AnnotationDbi aroma_light Biobase BiocGenerics BiocManager biomaRt Biostrings GenomicFeatures GenomicRanges IRanges Rsamtools ShortRead]; }; - EDIRquery = derive2 { name="EDIRquery"; version="1.2.0"; sha256="1qavmcr2a59b9bxqvvbqj37pr3iq7xmal51r7zc9cr4ya52ihqm7"; depends=[GenomicRanges InteractionSet readr tibble tictoc]; }; - EGAD = derive2 { name="EGAD"; version="1.30.0"; sha256="0j9vh489mrg1vl8hb8imppi1x5p0lmys1xi445x2l1ar93fr6f55"; depends=[Biobase GEOquery gplots igraph impute limma MASS plyr RColorBrewer RCurl zoo]; }; - EGSEA = derive2 { name="EGSEA"; version="1.30.1"; sha256="1wvj51xfbr38lj7ypphy274f9jybs6ywjknczfxrbsaiq5awvkab"; depends=[AnnotationDbi Biobase DT edgeR EGSEAdata gage ggplot2 globaltest gplots GSVA HTMLUtils htmlwidgets hwriter limma metap org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db PADOG pathview plotly RColorBrewer safe stringi topGO]; }; - ELMER = derive2 { name="ELMER"; version="2.26.0"; sha256="0xx2hh4jj2bg951agf90s4a4p3i5qbmrysn6h0dy5269vclzwcwh"; depends=[biomaRt circlize ComplexHeatmap DelayedArray doParallel downloader dplyr ELMER_data GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel gridExtra Gviz IRanges lattice magrittr Matrix MultiAssayExperiment plotly plyr progress purrr readr reshape reshape2 rmarkdown rtracklayer rvest S4Vectors scales stringr SummarizedExperiment TCGAbiolinks tibble tidyr xml2]; }; - EMDomics = derive2 { name="EMDomics"; version="2.32.0"; sha256="152rhw499kkv8pzl4i5d0zmkprjzkqj4n36fxsq6n6b5kxigp56j"; depends=[BiocParallel CDFt emdist ggplot2 matrixStats preprocessCore]; }; - ENmix = derive2 { name="ENmix"; version="1.38.01"; sha256="1wh9lri9dp3904c2n6562z7p9gqx39dmag55imx8zrqnayxamc03"; depends=[AnnotationHub Biobase doParallel dynamicTreeCut ExperimentHub foreach genefilter geneplotter gplots gtools illuminaio impute IRanges irlba matrixStats minfi quadprog RPMM S4Vectors SummarizedExperiment]; }; - ERSSA = derive2 { name="ERSSA"; version="1.20.0"; sha256="1ipzxlv454nykff3cn84fp7awv1iv92hb227570rn16kqj8j0pln"; depends=[apeglm BiocParallel DESeq2 edgeR ggplot2 plyr RColorBrewer]; }; - EWCE = derive2 { name="EWCE"; version="1.10.2"; sha256="0gnmq9f58idw9jlcyqfri98kdm0jqi3gmqzc90bqda49mj34ynn7"; depends=[BiocParallel data_table DelayedArray dplyr ewceData ggplot2 HGNChelper limma Matrix orthogene reshape2 RNOmni SingleCellExperiment stringr SummarizedExperiment]; }; - EmpiricalBrownsMethod = derive2 { name="EmpiricalBrownsMethod"; version="1.30.0"; sha256="03rs0i1m4qrjmv1xscwa6va7vyixghgbrwsbmnj5ri5bcwppjv7g"; depends=[]; }; - EnMCB = derive2 { name="EnMCB"; version="1.14.0"; sha256="18xb943r7szyrgfn8dcq9ajfp465vsz0l32sdy1wclkb9i77jmr7"; depends=[BiocFileCache boot e1071 ggplot2 glmnet igraph Matrix mboost rms survival survivalROC survivalsvm]; }; - EnhancedVolcano = derive2 { name="EnhancedVolcano"; version="1.20.0"; sha256="097w3957m47m03iy8xc1m7pdgm3qy0kzqbllic8pd79qglrla802"; depends=[ggplot2 ggrepel]; }; - EnrichedHeatmap = derive2 { name="EnrichedHeatmap"; version="1.32.0"; sha256="0j87x26qimsx4gi311bm1g9bldwq9r4z3aflxf8p91zlavjbv8zp"; depends=[circlize ComplexHeatmap GenomicRanges GetoptLong IRanges locfit matrixStats Rcpp]; }; - EnrichmentBrowser = derive2 { name="EnrichmentBrowser"; version="2.32.0"; sha256="1lvk6l9phsxsyhbdq389yj4x4vx0p5yq0nv59i02mvj6cd4n1yq4"; depends=[AnnotationDbi BiocFileCache BiocManager edgeR GO_db graph graphite GSEABase hwriter KEGGgraph KEGGREST limma pathview Rgraphviz S4Vectors safe SPIA SummarizedExperiment]; }; - EpiCompare = derive2 { name="EpiCompare"; version="1.6.7"; sha256="1vaxxikfvmi5n8s80df7sb2jqdvc8q66ybw8hshp79f98aiczfgc"; depends=[AnnotationHub BiocGenerics BRGenomics ChIPseeker data_table downloadthis genomation GenomeInfoDb GenomicRanges ggplot2 htmltools IRanges plotly reshape2 rmarkdown rtracklayer stringr]; }; - EpiDISH = derive2 { name="EpiDISH"; version="2.18.0"; sha256="170ym3y6gd1kxghz2g5ynvgi1wrxx87b568cjcvzidpqkrkg87s6"; depends=[e1071 locfdr MASS Matrix matrixStats quadprog stringr]; }; - EpiMix = derive2 { name="EpiMix"; version="1.4.0"; sha256="1yrhc4nk95racnddxfyp98v543hdakqmiy9z9a83hfdr8bln8hq1"; depends=[AnnotationDbi AnnotationHub Biobase biomaRt data_table doParallel doSNOW downloader dplyr ELMER_data EpiMix_data ExperimentHub foreach GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 impute IRanges limma plyr progress R_matlab RColorBrewer RCurl rlang RPMM S4Vectors SummarizedExperiment tibble tidyr]; }; - EpiTxDb = derive2 { name="EpiTxDb"; version="1.14.1"; sha256="0ql7qwk4hw1gv66n64ygj0yvinab42dhcacczcgb7mrwiwsmyhmd"; depends=[AnnotationDbi BiocFileCache BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges httr IRanges Modstrings RSQLite S4Vectors tRNAdbImport xml2]; }; - EventPointer = derive2 { name="EventPointer"; version="3.10.0"; sha256="15v2dbbllsy33hypsgcwcldm7m0bf282l4pwfsvm14v8mv4nv7p4"; depends=[abind affxparser Biostrings BSgenome cobs doParallel fgsea foreach GenomeInfoDb GenomicFeatures GenomicRanges glmnet graph igraph IRanges iterators limma lpSolve MASS Matrix matrixStats nnls poibin prodlim qvalue RBGL rhdf5 S4Vectors SGSeq speedglm stringr SummarizedExperiment tximport]; }; - ExCluster = derive2 { name="ExCluster"; version="1.20.0"; sha256="0wfyfl4bvh6v993w76jxaicnsdvllhcnjv0z93ljlimj988mpxdl"; depends=[GenomicRanges IRanges matrixStats Rsubread rtracklayer]; }; - ExiMiR = derive2 { name="ExiMiR"; version="2.44.0"; sha256="0wk6wz123590b4mf0kf7g3cf0mkb74hhiwpqgsywc2sgs75n2b8h"; depends=[affy affyio Biobase limma preprocessCore]; }; - ExperimentHub = derive2 { name="ExperimentHub"; version="2.10.0"; sha256="1prl24sg5l142155z3iaxrvig2wv2xqajq02nj30jjjih4p4936w"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocManager rappdirs S4Vectors]; }; - ExperimentHubData = derive2 { name="ExperimentHubData"; version="1.28.0"; sha256="0msg3wpz1ppvwc4dsm9bz9h4y4hz67xr1xwp4vv4100sg0i5v9jn"; depends=[AnnotationHubData BiocGenerics BiocManager curl DBI ExperimentHub httr S4Vectors]; }; - ExperimentSubset = derive2 { name="ExperimentSubset"; version="1.12.0"; sha256="0andnybl0yfg53v4j865rjjy1s9l3hnwvkapdz0ixmi87bwxnshw"; depends=[Matrix S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment TreeSummarizedExperiment]; }; - ExploreModelMatrix = derive2 { name="ExploreModelMatrix"; version="1.14.0"; sha256="131ic20k6x27pziy3gdvjmrhdsxrslas6a6z4qwhjqg4ff8vz4r3"; depends=[cowplot dplyr DT ggplot2 limma magrittr MASS rintrojs S4Vectors scales shiny shinydashboard shinyjs tibble tidyr]; }; - ExpressionAtlas = derive2 { name="ExpressionAtlas"; version="1.30.0"; sha256="1rrzz4m5ldawmd70j6cx6ihca6blkjixif1hdyfb475d0kbqwshh"; depends=[Biobase BiocStyle httr jsonlite limma RCurl S4Vectors SummarizedExperiment XML xml2]; }; - FEAST = derive2 { name="FEAST"; version="1.10.0"; sha256="1makgf3djjl0k0wz26krgwghk829xly04kqa230kr212ch0z5r76"; depends=[BiocParallel irlba matrixStats mclust SC3 SingleCellExperiment SummarizedExperiment TSCAN]; }; - FELLA = derive2 { name="FELLA"; version="1.22.0"; sha256="0dmjv7yv7fxh3yssdpfmq4kkh9lhh7lmxaxky1klxmh26x7c0972"; depends=[igraph KEGGREST Matrix plyr]; }; - FGNet = derive2 { name="FGNet"; version="3.36.0"; sha256="1s8j49mzr1ljy8g3ph17v0pkrdkj9sm3292dhm2y6adac8fhdkhp"; depends=[hwriter igraph plotrix png R_utils RColorBrewer reshape2 XML]; }; - FISHalyseR = derive2 { name="FISHalyseR"; version="1.36.0"; sha256="1y8gsgd0jzc98mhnrx1xwxpqsdwm43l13fr9c7nxrh6c90rxq6i7"; depends=[abind EBImage]; }; - FLAMES = derive2 { name="FLAMES"; version="1.8.0"; sha256="0937zag0h4bvpapld267s5gz36h8zgjrgvbng9m7czdd8w6064ns"; depends=[bambu basilisk BiocGenerics Biostrings circlize ComplexHeatmap cowplot dplyr DropletUtils future GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 gridExtra igraph jsonlite magrittr Matrix MultiAssayExperiment RColorBrewer Rcpp reticulate Rhtslib Rsamtools rtracklayer S4Vectors scater scran scuttle SingleCellExperiment stringr SummarizedExperiment tidyr withr zlibbioc]; }; - FRASER = derive2 { name="FRASER"; version="1.14.1"; sha256="13s3pwsh3fb4ym5q29fq81cl6jin3gh59pq9gh5crpqxpr6aij9w"; depends=[AnnotationDbi BBmisc Biobase BiocGenerics BiocParallel biomaRt BSgenome cowplot data_table DelayedArray DelayedMatrixStats extraDistr generics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel HDF5Array IRanges matrixStats OUTRIDER pcaMethods pheatmap plotly PRROC R_utils RColorBrewer Rcpp RcppArmadillo rhdf5 Rsamtools Rsubread S4Vectors SummarizedExperiment tibble VGAM]; }; - FRGEpistasis = derive2 { name="FRGEpistasis"; version="1.38.0"; sha256="1rmr91916v5x3c2k3cl4kpzicgrqrb62ws355w4k3gnldki84c72"; depends=[fda MASS]; }; - FamAgg = derive2 { name="FamAgg"; version="1.30.0"; sha256="10khlziwvizhcw35ja41694m89nqbihfxazw0dka1xdwdz17fj8x"; depends=[BiocGenerics gap igraph kinship2 Matrix survey]; }; - FastqCleaner = derive2 { name="FastqCleaner"; version="1.20.0"; sha256="0v672v07591zwd48x1qbnrjg62xs0kldhi88vyi8f1ladcnk7zl4"; depends=[Biostrings DT htmltools IRanges Rcpp S4Vectors shiny shinyBS ShortRead]; }; - FeatSeekR = derive2 { name="FeatSeekR"; version="1.2.0"; sha256="0nxp961sbp43qnlyzh7ln4cixzr652ixngjqbl6zb8dc74hpmbaf"; depends=[MASS pheatmap pracma SummarizedExperiment]; }; - FilterFFPE = derive2 { name="FilterFFPE"; version="1.12.0"; sha256="0qx529j65d47xz30zw9l671359v0cdag37692zg7v4g6pmzdz0fh"; depends=[doParallel foreach GenomicRanges IRanges Rsamtools S4Vectors]; }; - FindIT2 = derive2 { name="FindIT2"; version="1.8.0"; sha256="1zhc8lwi1yasz1iz5l47i0cqp0jrb8l7dii43v6arc9ay4mfa7w7"; depends=[BiocGenerics BiocParallel dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel glmnet IRanges MultiAssayExperiment patchwork progress purrr qvalue rlang rtracklayer S4Vectors stringr SummarizedExperiment tibble tidyr withr]; }; - FitHiC = derive2 { name="FitHiC"; version="1.28.0"; sha256="0ygcq3xi55swsmysn539cr3m504rfb6zm30w747pa46r63dfjda7"; depends=[data_table fdrtool Rcpp]; }; - FlowSOM = derive2 { name="FlowSOM"; version="2.10.0"; sha256="170xz3b4kfsxpqirfz9vk4j8dkdmz4qd0a1nm3yaya1rddpg9m3l"; depends=[BiocGenerics colorRamps ConsensusClusterPlus dplyr flowCore ggforce ggnewscale ggplot2 ggpubr igraph magrittr rlang Rtsne tidyr XML]; }; - FunChIP = derive2 { name="FunChIP"; version="1.28.0"; sha256="1qhwabm7vgjqmgxdla6qs70sncvzjc8qh5vpq5xqp50hk1lli7f1"; depends=[doParallel fda foreach GenomeInfoDb GenomicAlignments GenomicRanges RColorBrewer Rcpp Rsamtools shiny]; }; - FuseSOM = derive2 { name="FuseSOM"; version="1.4.0"; sha256="1mrb8rgrfn0mivczyw1k00rpkh6wh1v4fvxbdsq1r5jf0n0sgyil"; depends=[analogue cluster coop diptest fastcluster FCPS fpc ggplot2 ggplotify ggpubr pheatmap proxy psych Rcpp S4Vectors stringr SummarizedExperiment]; }; - GA4GHclient = derive2 { name="GA4GHclient"; version="1.26.0"; sha256="0s0d1m340v4nhms3mj1w126s003kmyfimnc1m6fj61glq8w8566j"; depends=[BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges httr IRanges jsonlite S4Vectors VariantAnnotation]; }; - GA4GHshiny = derive2 { name="GA4GHshiny"; version="1.24.0"; sha256="05wm2qj6cr81l9d1wk1xk1f02c3777k3hkjz4nwj65rsfph2g39f"; depends=[AnnotationDbi BiocGenerics dplyr DT GA4GHclient GenomeInfoDb GenomicFeatures openxlsx purrr S4Vectors shiny shinyjs shinythemes tidyr]; }; - GARS = derive2 { name="GARS"; version="1.22.0"; sha256="0p6r48k6yljwqj13yfdlk2s97fmmwwdpyzwsmpi26p5j9q6352pl"; depends=[cluster DaMiRseq ggplot2 MLSeq SummarizedExperiment]; }; - GAprediction = derive2 { name="GAprediction"; version="1.28.0"; sha256="1nn67bnb4h6z7xdi8ngjw3lkz6wjn6fzcxlhl46wnzg01hiqvjwz"; depends=[glmnet Matrix]; }; - GBScleanR = derive2 { name="GBScleanR"; version="1.6.0"; sha256="19v3w4f8d0011c70x47bfiaqybdj52hya2nw18zsbggpcp8l8hn7"; depends=[expm gdsfmt ggplot2 Rcpp RcppParallel SeqArray tidyr]; }; - GDCRNATools = derive2 { name="GDCRNATools"; version="1.22.0"; sha256="1d98q3hgkfl53k50ag8yfkdq9sjb65qmyvd9z2dnil1p1kksxz9x"; depends=[BiocParallel biomaRt clusterProfiler DESeq2 DOSE DT edgeR GenomicDataCommons ggplot2 gplots jsonlite limma org_Hs_eg_db pathview rjson shiny survival survminer XML]; }; - GDSArray = derive2 { name="GDSArray"; version="1.22.0"; sha256="132xam32zh9bwh08ar593bwzn2icdwppr1ahfmkgvknpf94wg288"; depends=[BiocGenerics DelayedArray gdsfmt S4Vectors SeqArray SNPRelate]; }; - GEM = derive2 { name="GEM"; version="1.28.0"; sha256="1hzhjpq396a8h05m0j9yz641wz3hz2j3wr5va695cixs3m8gpgpg"; depends=[ggplot2]; }; - GENESIS = derive2 { name="GENESIS"; version="2.32.0"; sha256="1ccxl1a277s80i8qbvkcqajgwbl90rbjv3dhfzcq4dm6gqw805l9"; depends=[Biobase BiocGenerics BiocParallel data_table gdsfmt GenomicRanges GWASTools igraph IRanges Matrix reshape2 S4Vectors SeqArray SeqVarTools SNPRelate]; }; - GENIE3 = derive2 { name="GENIE3"; version="1.24.0"; sha256="0bsid8qhcqgalqghr2b2592pzm4viyi7wq8h5dmhrrl7gky8l60k"; depends=[dplyr reshape2]; }; - GEOexplorer = derive2 { name="GEOexplorer"; version="1.8.0"; sha256="1jhjsjqbd2hx0axf55k0q4ls21bb3p1x9y9k5s4sb6wanmpgiqpw"; depends=[Biobase car DT edgeR enrichR factoextra GEOquery ggplot2 heatmaply htmltools httr impute knitr limma markdown pheatmap plotly R_utils readxl scales shiny shinybusy shinycssloaders shinyHeatmaply stringr sva umap xfun XML xml2]; }; - GEOfastq = derive2 { name="GEOfastq"; version="1.10.0"; sha256="0j3x5q531yzma852wqrm2g5m643hjg0laa91n6a5r8zcr14f2kw6"; depends=[doParallel foreach plyr RCurl rvest stringr xml2]; }; - GEOmetadb = derive2 { name="GEOmetadb"; version="1.64.0"; sha256="11z6fq12kk7v0aqx1fi4bqhq6zhiq101hs6b6fgabqnjy7f96azq"; depends=[GEOquery RSQLite]; }; - GEOquery = derive2 { name="GEOquery"; version="2.70.0"; sha256="1xjfh9lx2cfwzkk61pdarajsa86nzhy3dz7r4zws20pz4xkhwv87"; depends=[Biobase curl data_table dplyr limma magrittr R_utils readr tidyr xml2]; }; - GEOsubmission = derive2 { name="GEOsubmission"; version="1.54.0"; sha256="03icqyknc0kli12ybnk08pqhinagn8d7m73dyl90wnpc87sm8lqw"; depends=[affy Biobase]; }; - GEWIST = derive2 { name="GEWIST"; version="1.46.0"; sha256="02abx3zr4vyklc4d611ygy8g0msl4ir7d6fh9gp0lx1bscvqraa0"; depends=[car]; }; - GGPA = derive2 { name="GGPA"; version="1.14.0"; sha256="08xbxbqq9vm1i3y99n72v4m7crf18wq7mk21psm7jpp7b0k8f0xr"; depends=[GGally matrixStats network Rcpp RcppArmadillo scales sna]; }; - GIGSEA = derive2 { name="GIGSEA"; version="1.20.0"; sha256="08039jcq5jxq343ig56x22w1yqwnmd5wz65r3ipldp7dcrm2ccfp"; depends=[locfdr MASS Matrix]; }; - GISPA = derive2 { name="GISPA"; version="1.26.0"; sha256="19vbcfdf959xs6kgds37ij3qay9x61dzrlvcs238m7hywl4dn3lz"; depends=[Biobase changepoint data_table genefilter GSEABase HH lattice latticeExtra plyr scatterplot3d]; }; - GLAD = derive2 { name="GLAD"; version="2.66.0"; sha256="04wyzn56crz7sa453qj07p90vvg8nwrqz54m9ms9vf9z8adpck51"; depends=[aws]; }; - GMRP = derive2 { name="GMRP"; version="1.30.0"; sha256="15d4yr2lvdap8ypqxl83n44v58spq1ffa42pcp37jbsymwg4azx9"; depends=[diagram GenomicRanges plotrix]; }; - GNET2 = derive2 { name="GNET2"; version="1.18.0"; sha256="1735aywf8k9ivq6s39lc9ws35sk936c9k1m25fgc23ryw4bkr1rn"; depends=[DiagrammeR dplyr ggplot2 igraph matrixStats Rcpp reshape2 SummarizedExperiment xgboost]; }; - GNOSIS = derive2 { name="GNOSIS"; version="1.0.0"; sha256="0dv0ikznabg3lihwhx33ciy9glfqbg1lgd42qzw67gk4zin5jxdf"; depends=[car cBioPortalData compareGroups dashboardthemes DescTools DT fabricatr fontawesome maftools magrittr operator_tools partykit RColorBrewer reshape2 rpart rstatix shiny shinycssloaders shinydashboard shinydashboardPlus shinyjs shinylogs shinymeta shinyWidgets survival survminer tidyverse]; }; - GOSemSim = derive2 { name="GOSemSim"; version="2.28.1"; sha256="0p8368ia4ib61m1p8apk2d21lhdi62rfg04zl4190w6xv87k49xx"; depends=[AnnotationDbi GO_db Rcpp rlang yulab_utils]; }; - GOSim = derive2 { name="GOSim"; version="1.40.0"; sha256="1izsjs3li1qcp2nfy7zk3zbf3hh7kq75r78ijbn5yln9fgs6mbv1"; depends=[annotate AnnotationDbi cluster corpcor flexmix GO_db graph Matrix org_Hs_eg_db RBGL Rcpp topGO]; }; - GOTHiC = derive2 { name="GOTHiC"; version="1.38.0"; sha256="1cfbbx1vp19rxvjya3f1ij0gn36fcychfa5fhq71lrc31x9z6kf0"; depends=[BiocGenerics BiocManager Biostrings BSgenome data_table GenomeInfoDb GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors ShortRead]; }; - GOexpress = derive2 { name="GOexpress"; version="1.36.0"; sha256="17zchlp8c9yikkacimvgrkyijmnlj60vp4bk0rvm2brcff0cxywb"; depends=[Biobase biomaRt ggplot2 gplots randomForest RColorBrewer RCurl stringr]; }; - GOfuncR = derive2 { name="GOfuncR"; version="1.22.2"; sha256="004483q584530mh5nb28ppa8wllkd639n9yyw309acs2s4rc7saa"; depends=[AnnotationDbi GenomicRanges gtools IRanges mapplots Rcpp vioplot]; }; - GOpro = derive2 { name="GOpro"; version="1.28.0"; sha256="1shgn74ix5kj0f8pxm1f3pisg1x40dss51xjihlk3cjkypil3ark"; depends=[AnnotationDbi BH dendextend doParallel foreach GO_db IRanges MultiAssayExperiment org_Hs_eg_db Rcpp S4Vectors]; }; - GOstats = derive2 { name="GOstats"; version="2.68.0"; sha256="1v10ss1gf4a3qp6hbwa2f0la9sgiwhszg4c45qd6gv0dja2v30fs"; depends=[annotate AnnotationDbi AnnotationForge Biobase Category GO_db graph RBGL Rgraphviz]; }; - GOsummaries = derive2 { name="GOsummaries"; version="2.37.0"; sha256="1r2a1bym6hwhah4gq47j7983znwsl3fwbhx9lw9j1nxm4ip0d7nr"; depends=[ggplot2 gProfileR gtable limma plyr Rcpp reshape2]; }; - GPA = derive2 { name="GPA"; version="1.14.0"; sha256="09cc0i4dw8dsrcms927bmzlz3pa9qwg1j3ibl769v0qhbfblnqla"; depends=[DT ggplot2 ggrepel plyr Rcpp shiny shinyBS vegan]; }; - GRENITS = derive2 { name="GRENITS"; version="1.54.0"; sha256="1f3b2fnywxikf3h623fd5hbxpq4lslfa2i7z4qjn7dyxj4swv3a1"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; }; - GRaNIE = derive2 { name="GRaNIE"; version="1.6.1"; sha256="1v9p7nsf5ccykpb3njdmggdqdzjwksv89g6wzrqii1m1jz9nq7v8"; depends=[AnnotationHub biomaRt Biostrings checkmate circlize colorspace ComplexHeatmap data_table DESeq2 dplyr ensembldb forcats futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra igraph limma magrittr Matrix matrixStats patchwork progress RColorBrewer readr reshape2 rlang S4Vectors scales stringr SummarizedExperiment tibble tidyr tidyselect topGO viridis]; }; - GRmetrics = derive2 { name="GRmetrics"; version="1.28.0"; sha256="0r5wbwk8l46sdh3860hm6q1vvqb2fizwvp9cx1nbl4725y688di9"; depends=[drc ggplot2 plotly S4Vectors SummarizedExperiment]; }; - GSALightning = derive2 { name="GSALightning"; version="1.30.0"; sha256="1hf950j4n7a00qlil841kpc7n00rszb530v73hyd9sya78yn3saz"; depends=[data_table Matrix]; }; - GSAR = derive2 { name="GSAR"; version="1.36.0"; sha256="18bd5hsag1jicggqrc3kmn70vmaxdqkwyngmnzv511v26nq3qv1f"; depends=[igraph]; }; - GSCA = derive2 { name="GSCA"; version="2.32.0"; sha256="068zr4rzjafqrxhd9ajyrw896dfh6q97sghl8p7ik9d8074m1y2b"; depends=[ggplot2 gplots RColorBrewer reshape2 rhdf5 shiny sp]; }; - GSEABase = derive2 { name="GSEABase"; version="1.64.0"; sha256="1y7z3627shskwss8bzjz1xm02rv4s7cdi91v1xqdsbdayjkrh1nb"; depends=[annotate AnnotationDbi Biobase BiocGenerics graph XML]; }; - GSEABenchmarkeR = derive2 { name="GSEABenchmarkeR"; version="1.22.0"; sha256="14g147qamfcg91fmg4dsmzbcw7j0a826i40k57za3zkr0qxjpf0g"; depends=[AnnotationDbi AnnotationHub Biobase BiocFileCache BiocParallel edgeR EnrichmentBrowser ExperimentHub KEGGandMetacoreDzPathwaysGEO KEGGdzPathwaysGEO S4Vectors SummarizedExperiment]; }; - GSEAlm = derive2 { name="GSEAlm"; version="1.62.0"; sha256="0imaj5g7x2qnzqzdf4kgf7jgq6myyylphgnflgnprc0fys2l5qq8"; depends=[Biobase]; }; - GSEAmining = derive2 { name="GSEAmining"; version="1.12.0"; sha256="1n2szlv5jsr4h6dnf6d326lym3nbkaslr56dmggm699j7bb661wn"; depends=[dendextend dplyr ggplot2 ggwordcloud gridExtra rlang stringr tibble tidytext]; }; - GSRI = derive2 { name="GSRI"; version="2.50.0"; sha256="0y9cmxwv3x766m5aa0spqljnm1sh8zis1wlaa2585crdciqki39l"; depends=[Biobase fdrtool genefilter GSEABase les]; }; - GSReg = derive2 { name="GSReg"; version="1.36.0"; sha256="0hclk184ckblf464w2fgvjga5h4831j4srz9813ggm0q8raa7a4v"; depends=[AnnotationDbi GenomicFeatures Homo_sapiens org_Hs_eg_db]; }; - GSVA = derive2 { name="GSVA"; version="1.50.1"; sha256="0ld0bbl6ar3yhi6ncg9d8q60hg4m4v5kphl044fw63l19ixln7cf"; depends=[Biobase BiocParallel BiocSingular DelayedArray DelayedMatrixStats GSEABase HDF5Array IRanges Matrix S4Vectors SingleCellExperiment sparseMatrixStats SummarizedExperiment]; }; - GSgalgoR = derive2 { name="GSgalgoR"; version="1.12.0"; sha256="1yzx8dk26cmyr3xcnvm0s13avbc0r2yd1ccrk87frv8xnd0hrl0i"; depends=[cluster doParallel foreach matchingR nsga2R proxy survival]; }; - GUIDEseq = derive2 { name="GUIDEseq"; version="1.32.0"; sha256="123r4wcc9nxzjdp5jfil5y2l3c3gc470xyq14mh8lv5g7drixc6m"; depends=[BiocGenerics Biostrings BSgenome ChIPpeakAnno CRISPRseek data_table dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 hash IRanges limma matrixStats multtest openxlsx patchwork purrr rio rlang Rsamtools S4Vectors stringr tidyr]; }; - GWAS_BAYES = derive2 { name="GWAS.BAYES"; version="1.12.0"; sha256="1v3zp4n7p27mdylagz6i0n36pvqd2sy869l1mjldp9j1ypcqnysb"; depends=[caret GA limma MASS Matrix memoise]; }; - GWASTools = derive2 { name="GWASTools"; version="1.48.0"; sha256="1rjgdcw65zmmg5dy9mdaz720nvqk03bfsfvkdsa1wwhvlnxmscp8"; depends=[Biobase data_table DBI DNAcopy gdsfmt GWASExactHW lmtest logistf quantsmooth RSQLite sandwich survival]; }; - GWENA = derive2 { name="GWENA"; version="1.12.0"; sha256="0mjlqkdsy9d82mg655ydw0cb2vb70jf2xsnbjgjfqjpb1j7qn5hd"; depends=[cluster dplyr dynamicTreeCut ggplot2 gprofiler2 igraph magrittr matrixStats NetRep purrr RColorBrewer rlist stringr SummarizedExperiment tibble tidyr WGCNA]; }; - GateFinder = derive2 { name="GateFinder"; version="1.22.0"; sha256="0854gknmhz2rrliklzr5cz1miqza2249i5nhhkav78fw5pk5gqsl"; depends=[diptest flowCore flowFP mvoutlier splancs]; }; - GenProSeq = derive2 { name="GenProSeq"; version="1.6.0"; sha256="17rqr4k9n0mkwii48phsh9z3qv1xp1pvk5bcs53mav9z9x24fij6"; depends=[CatEncoders DeepPINCS keras mclust reticulate tensorflow ttgsea word2vec]; }; - GenVisR = derive2 { name="GenVisR"; version="1.34.0"; sha256="0mlv0r2f6800z8v96ba5227svp9r5cyhr8ijs072qw4g30h6mcpa"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings BSgenome data_table DBI GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra gtable gtools IRanges plyr reshape2 Rsamtools scales VariantAnnotation viridis]; }; - GeneBreak = derive2 { name="GeneBreak"; version="1.32.0"; sha256="1vsk891b4200cgia1dgz72nj11iq9r7wfz1j18a673qxj08505wn"; depends=[CGHbase CGHcall GenomicRanges QDNAseq]; }; - GeneExpressionSignature = derive2 { name="GeneExpressionSignature"; version="1.48.0"; sha256="0h58p1jzppz16l85498fa7kl8zwnrbilp9x09sby9lalkcdrzvry"; depends=[Biobase]; }; - GeneGA = derive2 { name="GeneGA"; version="1.52.0"; sha256="0k848y1kw9iq8wv5hfk2ylykj22mnrpj5881d47mkgii4j6l2ika"; depends=[hash seqinr]; }; - GeneGeneInteR = derive2 { name="GeneGeneInteR"; version="1.28.0"; sha256="1bfz7i8cbn0ddnyb3dnj8xrb1r6jsxf4hplxacis7yi6l1vylvzy"; depends=[data_table FactoMineR GenomicRanges igraph IRanges kernlab mvtnorm Rsamtools snpStats]; }; - GeneMeta = derive2 { name="GeneMeta"; version="1.74.0"; sha256="1m08gd0n1j21s9p8ppvqzzplwrnpknb5lprg07zlsr4c78fb0mgg"; depends=[Biobase genefilter]; }; - GeneNetworkBuilder = derive2 { name="GeneNetworkBuilder"; version="1.44.0"; sha256="0gz7lmn5qspnak3mcbjpbvy5436d8p15pq46877xykv9anry6z0v"; depends=[graph htmlwidgets plyr Rcpp Rgraphviz rjson XML]; }; - GeneOverlap = derive2 { name="GeneOverlap"; version="1.38.0"; sha256="074d3inz8sh8xxjliisa0p99rgy6r9fg9ljaka5bf1waxwpknzpw"; depends=[gplots RColorBrewer]; }; - GeneRegionScan = derive2 { name="GeneRegionScan"; version="1.58.0"; sha256="1zq9gnp81swpd88flr344snnn3mlhihrma5k0j95m4mi1g6sp3j6"; depends=[affxparser Biobase Biostrings RColorBrewer S4Vectors]; }; - GeneSelectMMD = derive2 { name="GeneSelectMMD"; version="2.46.0"; sha256="09d9dy85bdq86h429ycvqwnz2zpnn3p405l1x1b8p53g6g525d9a"; depends=[Biobase limma MASS]; }; - GeneStructureTools = derive2 { name="GeneStructureTools"; version="1.22.0"; sha256="07l3702hdxqd4bm8rd4ac69z0j30dxrk8k2srvli99dp5w7cqby3"; depends=[Biostrings BSgenome_Mmusculus_UCSC_mm10 data_table GenomicRanges Gviz IRanges plyr rtracklayer S4Vectors stringdist stringr]; }; - GeneTonic = derive2 { name="GeneTonic"; version="2.6.0"; sha256="1mdhs8ak72dxf30xiwjs6hdpkz6hxbzbxqr495l3vm2az6738y5l"; depends=[AnnotationDbi backbone bs4Dash circlize colorspace colourpicker ComplexHeatmap ComplexUpset dendextend DESeq2 dplyr DT dynamicTreeCut expm ggforce ggplot2 ggrepel ggridges GO_db igraph matrixStats plotly RColorBrewer rintrojs rlang rmarkdown S4Vectors scales shiny shinyAce shinycssloaders shinyWidgets SummarizedExperiment tidyr tippy viridis visNetwork]; }; - GeneticsPed = derive2 { name="GeneticsPed"; version="1.64.0"; sha256="0bsrgdryh8qdmsfsmd046rl04za9pkbgi034qmisbq9m1w5i9my8"; depends=[gdata genetics MASS]; }; - GenomAutomorphism = derive2 { name="GenomAutomorphism"; version="1.4.0"; sha256="0hpicwmlzlpgbqprzmq1ip9fnznvn2h8axa02rr5s7dk7ynidwcq"; depends=[BiocGenerics BiocParallel Biostrings data_table doParallel dplyr foreach GenomeInfoDb GenomicRanges IRanges numbers S4Vectors]; }; - GenomeInfoDb = derive2 { name="GenomeInfoDb"; version="1.38.8"; sha256="126qq2549h3dpjiq36709pym5bfwk6jqbz5q2sb5hl8lwm1apv8w"; depends=[BiocGenerics GenomeInfoDbData IRanges RCurl S4Vectors]; }; - GenomicAlignments = derive2 { name="GenomicAlignments"; version="1.38.2"; sha256="0i4n735xabdhlg7w2yd31lg65s9b6w12fhzij91hbcp0hs40fvw1"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; }; - GenomicDataCommons = derive2 { name="GenomicDataCommons"; version="1.26.0"; sha256="1inikcczkhav6h6a46ix9ixkf7b1n8rf766m5hmhmx09sspzsm5w"; depends=[dplyr GenomicRanges httr IRanges jsonlite magrittr rappdirs readr rlang tibble tidyr xml2]; }; - GenomicDistributions = derive2 { name="GenomicDistributions"; version="1.10.0"; sha256="0w6janm5awf15n0l6jhh9k371dcx2ad1rqf0gdqfi2asaafzbgrx"; depends=[Biostrings broom data_table dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges plyr reshape2 scales]; }; - GenomicFeatures = derive2 { name="GenomicFeatures"; version="1.54.4"; sha256="0g2fv4r82ql7p2allapmgs2bj4ad70c8030vzkml7ghrxsgrryp3"; depends=[AnnotationDbi Biobase BiocGenerics BiocIO biomaRt Biostrings DBI GenomeInfoDb GenomicRanges httr IRanges rjson RSQLite rtracklayer S4Vectors XVector]; }; - GenomicFiles = derive2 { name="GenomicFiles"; version="1.38.0"; sha256="1kvys60hhb0ndjvjdanfgciq3jc42iag8r0a199gv6w5bjaxp6wm"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges MatrixGenerics Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; - GenomicInteractionNodes = derive2 { name="GenomicInteractionNodes"; version="1.6.0"; sha256="0160xjki6cf0x4dqp2wmszala35wp77jz5qp2c3ppl07l8dm21jc"; depends=[AnnotationDbi GenomeInfoDb GenomicFeatures GenomicRanges GO_db graph IRanges RBGL S4Vectors]; }; - GenomicInteractions = derive2 { name="GenomicInteractions"; version="1.36.0"; sha256="13rnxig22agykzv3q7wm4wr9c5aw56q6q1zv8m5g5ngjcssy8l4c"; depends=[Biobase BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph InteractionSet IRanges Rsamtools rtracklayer S4Vectors stringr]; }; - GenomicOZone = derive2 { name="GenomicOZone"; version="1.16.0"; sha256="1dr10qwwnk4qz9n0yk7q6yrrwplhx8rnnrn9p521a551jyn0yw38"; depends=[biomaRt Ckmeans_1d_dp GenomeInfoDb GenomicRanges ggbio ggplot2 gridExtra IRanges lsr plyr Rdpack S4Vectors]; }; - GenomicPlot = derive2 { name="GenomicPlot"; version="1.0.5"; sha256="1662y1sk3sayw0717byrd7z40y2kr8xl0aifadsx90f0zb802a2m"; depends=[BiocGenerics circlize ComplexHeatmap cowplot dplyr edgeR genomation GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggplotify ggpubr ggsci ggsignif IRanges plyranges RCAS Rsamtools rtracklayer scales tidyr VennDiagram viridis]; }; - GenomicRanges = derive2 { name="GenomicRanges"; version="1.54.1"; sha256="1vrs3r8dyhhwj0s3vwvr168s84x5hj10lnpg1xf5c2kbj26bdv0w"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; }; - GenomicScores = derive2 { name="GenomicScores"; version="2.14.3"; sha256="0rhyfbm5whz4jygar9cqcrfy92h1lyam5wd8d9svhh80f15v53m9"; depends=[AnnotationHub Biobase BiocFileCache BiocGenerics BiocManager Biostrings DelayedArray GenomeInfoDb GenomicRanges HDF5Array httr IRanges rhdf5 S4Vectors XML]; }; - GenomicSuperSignature = derive2 { name="GenomicSuperSignature"; version="1.10.0"; sha256="0aq6919aqd0wp4z98isvq5gyydcxjq1ihsvi4nky9s5lrsibdpn0"; depends=[Biobase BiocFileCache ComplexHeatmap dplyr flextable ggplot2 ggpubr irlba plotly S4Vectors SummarizedExperiment]; }; - GenomicTuples = derive2 { name="GenomicTuples"; version="1.36.0"; sha256="1bw8ki8xap7v4n3lcwvbybv6rf0jwzdyjsnhabrvs8x43prl5h6x"; depends=[BiocGenerics data_table GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; - GeoDiff = derive2 { name="GeoDiff"; version="1.8.0"; sha256="1z3x8xcjl5kr4wyamhxf1p5mc28pc0cmv0j9nzzbzvz6mkf0ma1y"; depends=[Biobase GeomxTools lme4 Matrix NanoStringNCTools plyr Rcpp RcppArmadillo robust roptim testthat withr]; }; - GeoTcgaData = derive2 { name="GeoTcgaData"; version="2.2.0"; sha256="1mlbi8f32mhkwdkrl95krjx6vckb4k8rs9drf521rm933qjjhz07"; depends=[cqn data_table plyr SummarizedExperiment topconfects]; }; - GeomxTools = derive2 { name="GeomxTools"; version="3.6.2"; sha256="01lixadi4w7wsv39k51mimm88bc8hqfmcnbl16x28nzw91qfnmnj"; depends=[Biobase BiocGenerics data_table dplyr EnvStats GGally ggplot2 lmerTest NanoStringNCTools readxl reshape2 rjson rlang S4Vectors SeuratObject stringr]; }; - GladiaTOX = derive2 { name="GladiaTOX"; version="1.18.0"; sha256="01hb21j4pi59ix2ffj8aalc1zq382zw3n2gfaxqng78gadi1ck2n"; depends=[brew data_table DBI ggplot2 ggrepel numDeriv RColorBrewer RCurl RJSONIO RMariaDB RSQLite stringr tidyr XML xtable]; }; - Glimma = derive2 { name="Glimma"; version="2.12.0"; sha256="0pkh15jjjb83pq7d49yzwb2gyc95x4rww78qnzpdrzhycgmcapii"; depends=[DESeq2 edgeR htmlwidgets jsonlite limma S4Vectors SummarizedExperiment]; }; - GloScope = derive2 { name="GloScope"; version="1.0.0"; sha256="1zjj0pk2i0c6ivx05kyn1hd1pwnjdrx24dyf6gxg1q8hvdbpz7q2"; depends=[BiocParallel FNN ggplot2 MASS mclust mvnfast RANN rlang SingleCellExperiment]; }; - GlobalAncova = derive2 { name="GlobalAncova"; version="4.20.0"; sha256="0j1ma04zjsvf668idms8hx1vnw3sh5yy8fbhwscyk1qbfy708cfh"; depends=[annotate AnnotationDbi Biobase corpcor dendextend globaltest GSEABase VGAM]; }; - GmicR = derive2 { name="GmicR"; version="1.16.0"; sha256="1aglik6ywfwr6qpjb6b5ykg02x1k9q4v83liw29dahh74hp7rdzz"; depends=[AnnotationDbi ape bnlearn Category data_table doParallel DT foreach GOstats gRain gRbase GSEABase org_Hs_eg_db org_Mm_eg_db reshape2 shiny WGCNA]; }; - GraphAT = derive2 { name="GraphAT"; version="1.74.0"; sha256="1r5jz6w2cnc96arbilzgapp8xbn3kpv8jjamy58wycxqsj468p8f"; depends=[graph MCMCpack]; }; - GraphAlignment = derive2 { name="GraphAlignment"; version="1.66.0"; sha256="0gjij3nvmm5bd4bi5ljgjm6fj610jdbhdasx48jl6l366a06si0s"; depends=[]; }; - GraphPAC = derive2 { name="GraphPAC"; version="1.44.0"; sha256="1dz88vy85njw8lsr2y14fwjb3rnlr808xyw3aw8k8vavn6y82v5a"; depends=[igraph iPAC RMallow TSP]; }; - GreyListChIP = derive2 { name="GreyListChIP"; version="1.34.0"; sha256="1k974cvfbkl8ffn7k2la843bv2pf33cr5f6fahiiy24d68lxwifr"; depends=[BSgenome GenomeInfoDb GenomicAlignments GenomicRanges MASS Rsamtools rtracklayer SummarizedExperiment]; }; - Guitar = derive2 { name="Guitar"; version="2.18.0"; sha256="09i6j8dcmzvd9gh9629523hw0hbng18jdqw5gf1r31ck8m8wwmnc"; depends=[AnnotationDbi dplyr GenomicFeatures GenomicRanges ggplot2 knitr magrittr rtracklayer]; }; - Gviz = derive2 { name="Gviz"; version="1.46.1"; sha256="0an8hd2g2hp3p1vfsmxq77fm71xlf5g73j4w5mcy28x1aj073zxf"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; }; - HDF5Array = derive2 { name="HDF5Array"; version="1.30.1"; sha256="17cjjlgbp5kj0cpjm6915wy4cm6h5wl6d59j4na1s6kvgxx95qd0"; depends=[BiocGenerics DelayedArray IRanges Matrix rhdf5 rhdf5filters Rhdf5lib S4Arrays S4Vectors]; }; - HDTD = derive2 { name="HDTD"; version="1.36.0"; sha256="0y243fava1n8ivnd7y2grmllj358k1rva4axrlyyy8y9z9krkyr2"; depends=[Rcpp RcppArmadillo]; }; - HELP = derive2 { name="HELP"; version="1.60.0"; sha256="0q55prngrr04w5ma255k50yyzq13aqxmvk2yi12j4m4315h35ciz"; depends=[Biobase]; }; - HEM = derive2 { name="HEM"; version="1.74.0"; sha256="1zii27ihz42117mw6ipa1djv4nr1zlh3xkybp8ic2m143q1s7jsq"; depends=[Biobase]; }; - HERON = derive2 { name="HERON"; version="1.0.0"; sha256="0jz3c2mjgrqr9l0nz9y89qbxfbv94s745rc7vi1wgnij1ia6b8xi"; depends=[cluster data_table GenomicRanges harmonicmeanp IRanges limma Matrix matrixStats metap S4Vectors spdep SummarizedExperiment]; }; - HGC = derive2 { name="HGC"; version="1.10.0"; sha256="1x8j0x2yf0k6ngsgrnaq5rp2z50dfhffbnaqdn5pi5kr31mncnf9"; depends=[ape dendextend dplyr ggplot2 Matrix mclust patchwork RANN Rcpp RcppEigen]; }; - HIBAG = derive2 { name="HIBAG"; version="1.38.2"; sha256="095x8qli3l33w88dhhpx1hjfk64y2hqr6dpdq7ig39lv9nnxbvxc"; depends=[RcppParallel]; }; - HIPPO = derive2 { name="HIPPO"; version="1.14.0"; sha256="0flxpyji8c6z7cllpav0js3sk47r6qja1m7pcwmz2ch6aia11k0s"; depends=[dplyr ggplot2 ggrepel gridExtra irlba magrittr Matrix reshape2 rlang Rtsne SingleCellExperiment umap]; }; - HIREewas = derive2 { name="HIREewas"; version="1.20.0"; sha256="1vq9hqdyz26q27h1vjs2p5kq4m97qdi06j4wsiw38vigj4q1s2yw"; depends=[gplots quadprog]; }; - HMMcopy = derive2 { name="HMMcopy"; version="1.44.0"; sha256="1nhm8bv6p5zcs7f9p1hqzyjgya6v3q8rl13blh135pk9gxjiad2c"; depends=[data_table]; }; - HPAanalyze = derive2 { name="HPAanalyze"; version="1.20.0"; sha256="1xsln9sbflfvnm7fygh7lp1b6qc0wcrxyhz1sh2cfbwchx75hdhz"; depends=[dplyr ggplot2 gridExtra openxlsx tibble xml2]; }; - HPiP = derive2 { name="HPiP"; version="1.8.0"; sha256="0xsnjyzhzwfaiglyws8kqk9xnqzsjmmx7hmynr1dxrsmp57dracf"; depends=[caret corrplot dplyr ggplot2 httr igraph magrittr MCL pROC protr PRROC purrr readr stringr tibble tidyr]; }; - HTSFilter = derive2 { name="HTSFilter"; version="1.42.0"; sha256="1n3s24z6c9l7n3ri053rgxpj2xm7v9llhdqwnzb5ajvarkiikl6l"; depends=[Biobase BiocParallel DESeq2 edgeR]; }; - HTSeqGenie = derive2 { name="HTSeqGenie"; version="4.32.0"; sha256="1n2kj66m7r6fxzkh99fyl14glcdkr8ba1ywi5kqlr09msckg1ngw"; depends=[BiocGenerics BiocParallel Biostrings Cairo chipseq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gmapR hwriter IRanges Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment VariantAnnotation VariantTools]; }; - HTqPCR = derive2 { name="HTqPCR"; version="1.56.0"; sha256="14cff36ikbqhd5xizihpxzsv9jimcpbgnd381jd154pgi60bil0m"; depends=[affy Biobase gplots limma RColorBrewer]; }; - Harman = derive2 { name="Harman"; version="1.30.0"; sha256="1kfraxmkqkqn8j3lj1lfb7i18q8iyprih1wvr0dnx6prvz8wjl1p"; depends=[Ckmeans_1d_dp matrixStats Rcpp]; }; - HarmonizR = derive2 { name="HarmonizR"; version="1.0.0"; sha256="1gsgqirwk6p1babwidlhdmj6ilx2z8qlwi8b2vdxxjzxz9gqa9lj"; depends=[doParallel foreach janitor limma plyr seriation SummarizedExperiment sva]; }; - Harshlight = derive2 { name="Harshlight"; version="1.74.0"; sha256="1djs95l04b3qrqcb7jkzhfmxzbsn2riyydz8p2lmilg6z9rkdqx7"; depends=[affy altcdfenvs Biobase]; }; - Heatplus = derive2 { name="Heatplus"; version="3.10.0"; sha256="1vs7x4dc2vrfi2wi300bjr2hl1wwp4v27sgzycr6qv6x2nx9i5xq"; depends=[RColorBrewer]; }; - HelloRanges = derive2 { name="HelloRanges"; version="1.28.0"; sha256="0pzx5hixkyqqqgd2r7l9j0vhd7w5b0hlkkaxsfa7jvcizjbv3lgh"; depends=[BiocGenerics BiocIO Biostrings BSgenome docopt GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; - Herper = derive2 { name="Herper"; version="1.12.0"; sha256="02jypf2bzaqqdlx32cgvpf8vw13ax51nkibg36fkvh69prz17nq4"; depends=[reticulate rjson withr]; }; - HiCBricks = derive2 { name="HiCBricks"; version="1.20.0"; sha256="0590ihwsmw1b5fj54jmlpy24mhsnpphazlzi20hvjy7j3yjzzzzg"; depends=[BiocParallel curl data_table digest GenomeInfoDb GenomicRanges ggplot2 IRanges jsonlite R_utils R6 RColorBrewer readr reshape2 rhdf5 S4Vectors scales stringr tibble viridis]; }; - HiCDCPlus = derive2 { name="HiCDCPlus"; version="1.10.0"; sha256="02n5pn4l1i6aybw60nmmf8665djxp9nypv076bmvjv19kmbm7kr7"; depends=[bbmle Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicInteractions GenomicRanges InteractionSet IRanges MASS pscl R_utils Rcpp rlang rtracklayer S4Vectors tibble tidyr]; }; - HiCDOC = derive2 { name="HiCDOC"; version="1.4.1"; sha256="1pq6rlf0nm39dq8k1n0024qqp21ka4cn4a072dr1aa370s9lcin4"; depends=[BiocGenerics BiocParallel cowplot data_table GenomeInfoDb GenomicRanges ggplot2 gridExtra gtools InteractionSet multiHiCcompare pbapply Rcpp S4Vectors SummarizedExperiment zlibbioc]; }; - HiCExperiment = derive2 { name="HiCExperiment"; version="1.2.0"; sha256="12pif6yf4dg9s3bc24ibbbz9al0dx597g6kylwf7591s46z1m6mi"; depends=[BiocGenerics BiocIO BiocParallel dplyr GenomeInfoDb GenomicRanges InteractionSet IRanges Matrix rhdf5 S4Vectors strawr vroom]; }; - HiCcompare = derive2 { name="HiCcompare"; version="1.24.0"; sha256="1b38vdzdxzwhba33g7dnhiszlmfr8cwli971jmzyljjcfmsa1g2d"; depends=[BiocParallel data_table dplyr GenomicRanges ggplot2 gridExtra gtools InteractionSet IRanges KernSmooth mgcv pheatmap rhdf5 S4Vectors]; }; - HiContacts = derive2 { name="HiContacts"; version="1.4.0"; sha256="0adbyny0ji0a83rc12adbh2fws1x157wabv65d7gx0kwyz3jrzby"; depends=[BiocGenerics BiocIO BiocParallel dplyr GenomeInfoDb GenomicRanges ggplot2 ggrastr HiCExperiment InteractionSet IRanges Matrix readr RSpectra S4Vectors scales stringr SummarizedExperiment tibble tidyr]; }; - HiCool = derive2 { name="HiCool"; version="1.2.0"; sha256="0ilmps2wp7jm3hmlkrgnsrfzg4ianr25aawbh15x070sp2jsmmnj"; depends=[basilisk BiocIO dplyr GenomicRanges HiCExperiment InteractionSet IRanges plotly reticulate rmarkdown rmdformats S4Vectors sessioninfo stringr vroom]; }; - HiLDA = derive2 { name="HiLDA"; version="1.16.0"; sha256="0midjn8jhvm4cqljfi44jh850bl7drl7k22iwf1y7352jb1mjz84"; depends=[abind BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 cowplot forcats GenomicFeatures GenomicRanges ggplot2 R2jags Rcpp S4Vectors stringr tidyr TxDb_Hsapiens_UCSC_hg19_knownGene XVector]; }; - HiTC = derive2 { name="HiTC"; version="1.46.0"; sha256="16svq29fm9xl3rl9v6lyxf564manvp8ryxj1mbxc4pb360wmi780"; depends=[Biostrings GenomeInfoDb GenomicRanges IRanges Matrix RColorBrewer rtracklayer]; }; - HilbertCurve = derive2 { name="HilbertCurve"; version="1.32.0"; sha256="04575v4ha4znp7nc6irs79rldr8sp85785l362yx3hlz70hkg8n8"; depends=[circlize GenomicRanges HilbertVis IRanges png polylabelr]; }; - HilbertVis = derive2 { name="HilbertVis"; version="1.60.0"; sha256="1mb0011g4hp7bbx2qh29j9026yspw8ril7kszddy8n11wkgs9iwn"; depends=[lattice]; }; - HilbertVisGUI = derive2 { name="HilbertVisGUI"; version="1.60.0"; sha256="091jy4vixx9xw763mj5faxj02w07bqjk5myb75nban66yggxz5c2"; depends=[HilbertVis]; }; - HubPub = derive2 { name="HubPub"; version="1.10.1"; sha256="1a73vmqb95251i7ksgd28vjmgyjb5111b78hl2pfr9nwmdmwafjn"; depends=[available aws_s3 BiocManager biocthis dplyr fs usethis]; }; - HumanTranscriptomeCompendium = derive2 { name="HumanTranscriptomeCompendium"; version="1.17.0"; sha256="013lxz0hki13xsmx0j9m2r2hw203jnbnm0sjaaypi79m9p52maav"; depends=[S4Vectors shiny ssrch SummarizedExperiment]; }; - HybridMTest = derive2 { name="HybridMTest"; version="1.46.0"; sha256="1jkihcad453d7jqb78fl03yfqz169jz75c40y53569ndp2j4rg71"; depends=[Biobase fdrtool MASS survival]; }; - IFAA = derive2 { name="IFAA"; version="1.4.0"; sha256="09078d14zpck9ld3mmrav2g1s3fp33k40lbnlqjdfsq8myqpnf2x"; depends=[DescTools doParallel doRNG foreach glmnet HDCI mathjaxr Matrix MatrixExtra parallelly S4Vectors stringr SummarizedExperiment]; }; - IHW = derive2 { name="IHW"; version="1.30.0"; sha256="1pix38lg9snw0jdihh8sifnmckyw1lniwp95r93ca524g6swfc8b"; depends=[BiocGenerics fdrtool lpsymphony slam]; }; - ILoReg = derive2 { name="ILoReg"; version="1.12.1"; sha256="0y6qyrwkfihgx0lakv36h9kh8y2i1xxjanvrjwysmj9r266wfnpd"; depends=[aricode cluster cowplot dendextend DescTools doRNG doSNOW dplyr fastcluster foreach ggplot2 LiblineaR Matrix parallelDist pheatmap plyr reshape2 RSpectra Rtsne S4Vectors scales SingleCellExperiment SparseM SummarizedExperiment umap]; }; - IMAS = derive2 { name="IMAS"; version="1.26.0"; sha256="0c9ky8p0fjncn9wqx7s6ya2n1kixhakhm6ij3ccaacb8aaj97gaa"; depends=[AnnotationDbi BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfortify ggplot2 gridExtra IRanges IVAS lattice lme4 Matrix Rsamtools S4Vectors survival]; }; - IMMAN = derive2 { name="IMMAN"; version="1.22.0"; sha256="0wsv4hcvsdfm3npqh8qiqrl2bg95sqyrjxnv2xqa19niqbk6jlss"; depends=[Biostrings igraph seqinr STRINGdb]; }; - IMPCdata = derive2 { name="IMPCdata"; version="1.38.0"; sha256="0wlq95fi46zzk99mq1zh9rndl4d76ybvdxv0c5xi9gj71smd6sym"; depends=[rjson]; }; - INDEED = derive2 { name="INDEED"; version="2.16.0"; sha256="0338jf6dhskjp714ccbwizb02q8j45qr9wy3m69jv7r8c3f9r0xm"; depends=[devtools glasso igraph visNetwork]; }; - INPower = derive2 { name="INPower"; version="1.38.0"; sha256="0mk6lz0lsr34q3h6s5gd63jxl23fabc19zvjrk9w2anzxhnz7809"; depends=[mvtnorm]; }; - INSPEcT = derive2 { name="INSPEcT"; version="1.32.1"; sha256="04znack6p50cmc2qyk4hf45m6v70p0bv7h3xs87j0x0h4mb920ch"; depends=[Biobase BiocGenerics BiocParallel DESeq2 deSolve GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges KernSmooth plgem pROC readxl rootSolve Rsamtools rtracklayer S4Vectors shiny SummarizedExperiment TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - INTACT = derive2 { name="INTACT"; version="1.2.0"; sha256="0azm7yh5zjzi3rhkajncckr1cxq5l2h3wicfn8g28mmgp71xxcc0"; depends=[bdsmatrix numDeriv SQUAREM]; }; - IONiseR = derive2 { name="IONiseR"; version="2.26.0"; sha256="1y595hq40kpsasp74wsbf3ngd2rrriqg65z9y4svcwdygj03pgrz"; depends=[BiocGenerics BiocParallel Biostrings bit64 dplyr ggplot2 magrittr rhdf5 ShortRead stringr tibble tidyr XVector]; }; - IPO = derive2 { name="IPO"; version="1.28.0"; sha256="0w9izdj3mg053xbb107qg6jk7rgkb0vhx7ji4l27fac8ynhh89dg"; depends=[BiocParallel CAMERA rsm xcms]; }; - IRanges = derive2 { name="IRanges"; version="2.36.0"; sha256="0rhh82hrsm32bdjamfah84p7zi8fvr4shyq2rdjfxzdp9qy5rh2q"; depends=[BiocGenerics S4Vectors]; }; - ISAnalytics = derive2 { name="ISAnalytics"; version="1.12.0"; sha256="0y8m3d3mkzashyzw4b2rajwgrxmnbn4izfdc1g5m4wdyzcwa7pkd"; depends=[bslib datamods dplyr DT forcats fs ggplot2 ggrepel glue lifecycle lubridate purrr readr readxl rlang shiny shinyWidgets stringr tibble tidyr]; }; - ISLET = derive2 { name="ISLET"; version="1.4.0"; sha256="0dgjq159b4qd6f2f2x6lcpp9d22p1d5wrnhvcl1kzr1fdkqn6q3w"; depends=[abind BiocGenerics BiocParallel lme4 Matrix nnls purrr SummarizedExperiment]; }; - ISoLDE = derive2 { name="ISoLDE"; version="1.30.0"; sha256="1b8xrdyds2082f1j7yn160y1h4vad6z01rf4lmbh474k9wwwxfpd"; depends=[]; }; - ITALICS = derive2 { name="ITALICS"; version="2.62.0"; sha256="0zk9n94nqw6vpw908ka32zppxwqkki9krzxib06y1nic3bri3w9i"; depends=[affxparser DBI GLAD ITALICSData oligo oligoClasses pd_mapping50k_xba240]; }; - IVAS = derive2 { name="IVAS"; version="2.22.0"; sha256="1sw2gqy0gy4src45ha42ngppg038imyj5hbr602amq0ni9nnnl3p"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges ggfortify ggplot2 IRanges lme4 Matrix S4Vectors]; }; - IWTomics = derive2 { name="IWTomics"; version="1.26.0"; sha256="0mzwpbvpl73yjn91l5gp94xwrm3gdr918g72ap07g8ch8dvf9bj7"; depends=[fda GenomicRanges gtable IRanges KernSmooth S4Vectors]; }; - Icens = derive2 { name="Icens"; version="1.74.0"; sha256="0fz66bchf41jzgabs1s8drpi3f7g27lid5g50lxwh6ph3i02cpaw"; depends=[survival]; }; - IdeoViz = derive2 { name="IdeoViz"; version="1.37.0"; sha256="1bhari5ghag5f5dlrgm79hckbh0bamd9567z04qi0spnfr97wf3s"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges RColorBrewer rtracklayer]; }; - IgGeneUsage = derive2 { name="IgGeneUsage"; version="1.16.0"; sha256="08qy3vw1v8ik1z80ds7hmxbpalssnqlrkkb0wsr78vzffll5yrjc"; depends=[BH Rcpp RcppEigen RcppParallel reshape2 rstan rstantools StanHeaders SummarizedExperiment tidyr]; }; - ImmuneSpaceR = derive2 { name="ImmuneSpaceR"; version="1.30.0"; sha256="0lhilrh4xyw1cvqnx4b6g0llm9b1i4l2r476d4hmypkkgl25q8n7"; depends=[Biobase curl data_table digest flowCore flowWorkspace ggplot2 gplots heatmaply httr jsonlite pheatmap plotly preprocessCore R6 Rlabkey rmarkdown scales]; }; - InPAS = derive2 { name="InPAS"; version="2.10.0"; sha256="06a5lqx5ybcyv7szw50x686cib4mwyh9h5fpiqgy4whlxsr8sjiy"; depends=[AnnotationDbi batchtools Biobase Biostrings BSgenome cleanUpdTSeq depmixS4 dplyr flock future future_apply GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges limma magrittr parallelly plyranges preprocessCore readr reshape2 RSQLite S4Vectors]; }; - InTAD = derive2 { name="InTAD"; version="1.22.0"; sha256="01vwvv6cggflgwskb8kyf0izzz0dq1yyk05d9k2c6z59gqindi2n"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggpubr IRanges mclust MultiAssayExperiment qvalue rtracklayer S4Vectors SummarizedExperiment]; }; - Informeasure = derive2 { name="Informeasure"; version="1.12.1"; sha256="0yzi6llgv2sz0yigrcdhann0h4mfvz2x5khpgfr3ncypz92kd0f8"; depends=[entropy]; }; - IntEREst = derive2 { name="IntEREst"; version="1.26.0"; sha256="0gs7bcizksc16xw6wig5af28whv31qf09wh4sj5s4i37642rs7zf"; depends=[BiocGenerics BiocParallel Biostrings DBI DESeq2 DEXSeq edgeR GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges IRanges RMySQL Rsamtools S4Vectors seqinr seqLogo SummarizedExperiment]; }; - IntOMICS = derive2 { name="IntOMICS"; version="1.2.0"; sha256="1qhni8p8zap9szi499jrdxkacdrb7vdd4va5h4n0kdi4qr80vrzh"; depends=[bestNormalize bnlearn bnstruct cowplot ggplot2 ggraph gplots igraph matrixStats numbers RColorBrewer rlang SummarizedExperiment]; }; - InterCellar = derive2 { name="InterCellar"; version="2.8.0"; sha256="1xbrvjy7pdb94lb0arcwj1h4r6skj7cv0diwialwpi8mi3nzwj9j"; depends=[biomaRt circlize colorspace colourpicker ComplexHeatmap config data_table dendextend dplyr DT factoextra fmsb fs ggplot2 golem htmltools htmlwidgets igraph plotly plyr readxl rlang scales shiny shinyalert shinycssloaders shinydashboard shinyFeedback shinyFiles signal tibble tidyr umap visNetwork wordcloud2]; }; - InterMineR = derive2 { name="InterMineR"; version="1.24.0"; sha256="1rfqzmc7pl13g5n41rdcxy4k69qhmwgq8jci1v6j8cppzqi641ni"; depends=[Biostrings GenomicRanges httr igraph IRanges RCurl RJSONIO S4Vectors sqldf SummarizedExperiment XML xml2]; }; - InteractionSet = derive2 { name="InteractionSet"; version="1.30.0"; sha256="0mpgxcwhb734pyn6bj93xknb704yrjkprxpa7kqwl24rbqyjydqs"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix Rcpp S4Vectors SummarizedExperiment]; }; - InteractiveComplexHeatmap = derive2 { name="InteractiveComplexHeatmap"; version="1.10.0"; sha256="14hyq6szlj4xpd8yxwfli61g1mrc5s5r4m9l9c788z42jzq5jkkp"; depends=[clisymbols ComplexHeatmap digest fontawesome GetoptLong htmltools IRanges jsonlite kableExtra RColorBrewer S4Vectors shiny svglite]; }; - IntramiRExploreR = derive2 { name="IntramiRExploreR"; version="1.24.0"; sha256="1hk6za3csxzz7qz6vqbm7iyqgrbk73p06mallincqzwx1dnzdpj7"; depends=[FGNet igraph knitr]; }; - IsoBayes = derive2 { name="IsoBayes"; version="1.0.1"; sha256="134ncn81zd56k8qg92h5pz1cr07pij73bmam23h4ddxv22vahcwb"; depends=[data_table doParallel doRNG foreach ggplot2 glue HDInterval iterators Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; }; - IsoCorrectoR = derive2 { name="IsoCorrectoR"; version="1.20.0"; sha256="0q14xj8ai88z8w6rywkm59hwhgqljihl2g5lgrrdzi2wh47ab4z5"; depends=[dplyr magrittr pracma quadprog readr readxl stringr tibble WriteXLS]; }; - IsoCorrectoRGUI = derive2 { name="IsoCorrectoRGUI"; version="1.18.0"; sha256="1h6p9k0y1id6n2gjybyj44hpw32v74yyhcs5iy4qzhd62nmdalwr"; depends=[IsoCorrectoR readxl tcltk2]; }; - IsoformSwitchAnalyzeR = derive2 { name="IsoformSwitchAnalyzeR"; version="2.2.0"; sha256="1yin2jv06g3jrzadq6yjcr14jz1zzwyxipzna5csgr013dkkrl8h"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome DBI DEXSeq dplyr edgeR futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges limma magrittr pfamAnalyzeR plyr RColorBrewer RCurl readr reshape2 rtracklayer S4Vectors satuRn stringr SummarizedExperiment sva tibble tidyr tximeta tximport VennDiagram XVector]; }; - KBoost = derive2 { name="KBoost"; version="1.10.0"; sha256="1sbd104v35wbx148csavk6d1vi8nh53knj4jvl0454q49x2dlchi"; depends=[]; }; - KCsmart = derive2 { name="KCsmart"; version="2.60.0"; sha256="081j7n4c03pvwq5p99cb9y9acy13isvcrrnk5yqrxzyh95n13wbr"; depends=[BiocGenerics KernSmooth multtest siggenes]; }; - KEGGREST = derive2 { name="KEGGREST"; version="1.42.0"; sha256="05fc1i1bcdvvy4mr4m2cdqxd3jrj1rxkxy7c43yrliv5dlikyb07"; depends=[Biostrings httr png]; }; - KEGGgraph = derive2 { name="KEGGgraph"; version="1.62.0"; sha256="0i9iqr87mqih0rkbjx3wa383x4yfyzpcb0b0xzairbqgygvcq4kl"; depends=[graph RCurl Rgraphviz XML]; }; - KEGGlincs = derive2 { name="KEGGlincs"; version="1.28.0"; sha256="06rgmq28g1hw8r6isn1f5y9jiszmckvbicdlkna9x9wh9jzp0q5i"; depends=[AnnotationDbi gtools hgu133a_db httr igraph KEGGgraph KEGGREST KOdata org_Hs_eg_db plyr RJSONIO XML]; }; - KinSwingR = derive2 { name="KinSwingR"; version="1.20.0"; sha256="04vy8da4cza30ivf8jbrmysz71i7dwp787fazn4xr83jvs5vxgp5"; depends=[BiocParallel data_table sqldf]; }; - KnowSeq = derive2 { name="KnowSeq"; version="1.16.0"; sha256="0665wwm8skhh7vqgg2kx2izbd3ks0zkar1m73fqj33rx7fjrqbzb"; depends=[caret cqn e1071 edgeR ggplot2 gridExtra Hmisc httr jsonlite kernlab limma praznik R_utils randomForest reshape2 rlist rmarkdown stringr sva XML]; }; - LACE = derive2 { name="LACE"; version="2.6.1"; sha256="02xxf0l8z6zgdmxf6nfw9vizah38i2midqgdl11iwn72ybbgcamq"; depends=[biomaRt bsplus callr configr curl data_table data_tree doParallel dplyr DT forcats foreach fs ggplot2 htmltools htmlwidgets igraph jsonlite logr Matrix purrr RColorBrewer readr Rfast shiny shinyBS shinydashboard shinyFiles shinyjs shinythemes shinyvalidate sortable stringi stringr SummarizedExperiment svglite tidyr]; }; - LBE = derive2 { name="LBE"; version="1.70.0"; sha256="0fvjgrxdkw6nnrbgk554cgmmlz33gia15pmsmwkv98phrwhhv6cr"; depends=[]; }; - LEA = derive2 { name="LEA"; version="3.14.0"; sha256="1rhlrcp9rzf64rkabgk3gd8jqdg8ldwpkxvpfb6g49bgpkg1h6b1"; depends=[]; }; - LOBSTAHS = derive2 { name="LOBSTAHS"; version="1.28.0"; sha256="0gbyd341hjsvkl9axb8mpyyaaks8kl5s10k1kx1hzgrfhcrm0s6d"; depends=[CAMERA xcms]; }; - LOLA = derive2 { name="LOLA"; version="1.32.0"; sha256="0w3c1bywch6629h8dbjvi24mrpxkwbaj5vaxrvyvx7a31k04zjqc"; depends=[BiocGenerics data_table GenomicRanges IRanges reshape2 S4Vectors]; }; - LPE = derive2 { name="LPE"; version="1.76.0"; sha256="0ihsyamx3zk0830bs2bfpl4ich30cs6hmr7q2l6x6b5ycgsvbdq9"; depends=[]; }; - LPEadj = derive2 { name="LPEadj"; version="1.62.0"; sha256="17m5lclr2rwb2z0i230gsxkccysmpcvsp4kxjpdjhvnikfm46ssp"; depends=[LPE]; }; - LRBaseDbi = derive2 { name="LRBaseDbi"; version="2.12.1"; sha256="11kwqpnymck0qkb5g6k6r4yiz6w0zvy08y2hgh2xxz0cms1vpkq5"; depends=[AnnotationDbi Biobase DBI RSQLite]; }; - LRcell = derive2 { name="LRcell"; version="1.10.0"; sha256="19p5vwsr1hq6p02g6alysm7maalrlpg8lg8r76ffsbh1wqj776fp"; depends=[AnnotationHub BiocParallel dplyr ExperimentHub ggplot2 ggrepel magrittr]; }; - LedPred = derive2 { name="LedPred"; version="1.36.0"; sha256="1nfsqz03xaychi6qf4cdjqb28253hdnswl6wvc3jgnjilh8xc8mm"; depends=[akima e1071 ggplot2 irr jsonlite plot3D plyr RCurl ROCR testthat]; }; - LinTInd = derive2 { name="LinTInd"; version="1.6.0"; sha256="0bk7l81x8rm13ps8n1jvd20fnl9si1139r61vzb5z0l3h3v1m9da"; depends=[ape BiocGenerics Biostrings cowplot data_tree dplyr ggnewscale ggplot2 ggtree IRanges networkD3 pheatmap purrr reshape2 rlist S4Vectors stringdist stringr]; }; - LineagePulse = derive2 { name="LineagePulse"; version="1.21.0"; sha256="09x1i7slysqf3dpjzck6rgfzhyswaj0kk8i047yscg8fcaksbmqg"; depends=[BiocParallel circlize ComplexHeatmap ggplot2 gplots knitr Matrix RColorBrewer SingleCellExperiment SummarizedExperiment]; }; - LinkHD = derive2 { name="LinkHD"; version="1.16.0"; sha256="1ic1vymbp2cxxq0xkh1szw8ldc197599511azc7k6h4d42rbw74f"; depends=[cluster data_table emmeans ggplot2 ggpubr gridExtra MultiAssayExperiment reshape2 rio scales vegan]; }; - Linnorm = derive2 { name="Linnorm"; version="2.26.0"; sha256="1ax5zmby8zw0mgxjd8yhlk4ai0s03zq59qwzqgv8zqlms8yjpvs2"; depends=[amap apcluster ellipse fastcluster fpc ggdendro ggplot2 gmodels igraph limma MASS mclust Rcpp RcppArmadillo Rtsne statmod vegan zoo]; }; - LiquidAssociation = derive2 { name="LiquidAssociation"; version="1.56.0"; sha256="00k20l2cw54wzji18jdf9716xpza0h1pdh7n8d0v3krvlmiiz3zb"; depends=[Biobase geepack org_Sc_sgd_db yeastCC]; }; - LoomExperiment = derive2 { name="LoomExperiment"; version="1.20.0"; sha256="0mwc5f15s5lw36jdjz3pzm0d5bck0hbsalbcyy1zyq0pqa2lyl7k"; depends=[BiocIO DelayedArray GenomicRanges HDF5Array Matrix rhdf5 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; - LymphoSeq = derive2 { name="LymphoSeq"; version="1.30.0"; sha256="18g6s1fd274qrrn20w02hqav5ff53g5c61v1ygv12z370n835g42"; depends=[Biostrings circlize data_table dplyr ggplot2 ggtree ineq LymphoSeqDB msa phangorn plyr RColorBrewer reshape stringdist UpSetR VennDiagram]; }; - M3C = derive2 { name="M3C"; version="1.24.0"; sha256="0q6npc5pglmhzm9270pi11kbp5wg3ncvflp4rhv3w778qza2zlk1"; depends=[cluster corpcor doParallel doSNOW foreach ggplot2 Matrix matrixcalc Rtsne umap]; }; - M3Drop = derive2 { name="M3Drop"; version="1.28.0"; sha256="0xn458kc7hwhlf1jfzz6x5wlzb5pps2fa2n52jsp9zifsrk2zpkz"; depends=[bbmle gplots Hmisc irlba Matrix matrixStats numDeriv RColorBrewer reldist statmod]; }; - MACSQuantifyR = derive2 { name="MACSQuantifyR"; version="1.16.0"; sha256="0y9xjk06lxf9bwlpzf73xj175858hpdgcyqdk9qjzlik0g1aksd1"; depends=[ggplot2 ggrepel gridExtra lattice latticeExtra png prettydoc readxl rmarkdown rvest xml2]; }; - MACSr = derive2 { name="MACSr"; version="1.10.0"; sha256="1mnbxhmgh8ca5drspvsskf554kp31a2s35f9f05j49zzjrzma74p"; depends=[AnnotationHub basilisk ExperimentHub reticulate S4Vectors]; }; - MADSEQ = derive2 { name="MADSEQ"; version="1.28.0"; sha256="10bgj9z1l0l9nmz8hdag9ngy9xwz1hj1jvhk26y2pqli6d6448yx"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 coda GenomeInfoDb GenomicAlignments GenomicRanges IRanges preprocessCore rjags Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation vcfR VGAM zlibbioc]; }; - MAGAR = derive2 { name="MAGAR"; version="1.10.0"; sha256="1yk3c2gkkvbzvf4svixbg5mnb7hrdiyxprf9ixaqhhs2jic88cms"; depends=[argparse bigstatsr crlmm data_table doParallel ff HDF5Array igraph impute jsonlite plyr reshape2 rjson RnBeads RnBeads_hg19 snpStats UpSetR]; }; - MAGeCKFlute = derive2 { name="MAGeCKFlute"; version="2.6.0"; sha256="0bjylxdaw5695673yqrgx37s475w035djr9az3s1z9xd89ksv0xr"; depends=[Biobase clusterProfiler depmap DOSE enrichplot ggplot2 ggrepel gridExtra msigdbr pathview reshape2]; }; - MAI = derive2 { name="MAI"; version="1.8.0"; sha256="0wiax2lij7k00havwzja120fvn65wkq57mv7kvwkgfya97k73g27"; depends=[caret doParallel e1071 foreach future future_apply missForest pcaMethods S4Vectors SummarizedExperiment tidyverse]; }; - MAIT = derive2 { name="MAIT"; version="1.36.0"; sha256="1kljw50mzdmd9b35qjkagzilhhdf4dzv8n96g36jj7k4952d1h6g"; depends=[agricolae CAMERA caret class e1071 gplots MASS pls plsgenomics Rcpp xcms]; }; - MANOR = derive2 { name="MANOR"; version="1.74.0"; sha256="10zf6c1vx6cp4wg6axpmbpxk2hlmf6mga7rdh765fznwb71r4h0x"; depends=[GLAD]; }; - MAST = derive2 { name="MAST"; version="1.28.0"; sha256="17iycxxp6jb56ra21546kh2zlrm8by2vrlvsxvx8xmbpk32fb4lp"; depends=[abind Biobase BiocGenerics data_table ggplot2 Matrix plyr progress reshape2 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; - MBASED = derive2 { name="MBASED"; version="1.36.0"; sha256="0gdjpp8g1wbyzriv3mgny0hxnas71gdv8f1mykmja65wr9lhkx8x"; depends=[BiocGenerics BiocParallel GenomicRanges RUnit SummarizedExperiment]; }; - MBAmethyl = derive2 { name="MBAmethyl"; version="1.36.0"; sha256="022w2lvdzrwvnrcr80gmnypxk0djyp3w5qi4ml1bkh1ixhdbic47"; depends=[]; }; - MBCB = derive2 { name="MBCB"; version="1.56.0"; sha256="1hjylg7rkynwgxvh07rcwzg1awfcv7xvg2l5pyzyl7fxgczmn7px"; depends=[preprocessCore tcltk2]; }; - MBECS = derive2 { name="MBECS"; version="1.6.0"; sha256="1j7vb26n2fnf5fkk8hfz552yx91g4zg719alhg4hg2vvjd1qx2l1"; depends=[cluster dplyr ggplot2 gridExtra limma lme4 lmerTest magrittr Matrix pheatmap phyloseq rmarkdown ruv sva tibble tidyr vegan]; }; - MBQN = derive2 { name="MBQN"; version="2.14.0"; sha256="0shy9b1qj5fr7qs6c03ygqs3whv2d4ik59qxsgmcs880rhxxw4x2"; depends=[BiocFileCache ggplot2 limma PairedData preprocessCore rappdirs RCurl rmarkdown SummarizedExperiment xml2]; }; - MBttest = derive2 { name="MBttest"; version="1.30.0"; sha256="1m7byr93kbb7d2nx3cv2v72vg8rwvr5b59n6wpdlx1lg167dlp2k"; depends=[gplots gtools]; }; - MCbiclust = derive2 { name="MCbiclust"; version="1.26.0"; sha256="1jbhlykxb0l28mmlzmh4pa85jh95jd9imvy2jp7rpkgmjdi8ndrb"; depends=[AnnotationDbi BiocParallel cluster GGally ggplot2 GO_db org_Hs_eg_db scales WGCNA]; }; - MDTS = derive2 { name="MDTS"; version="1.22.0"; sha256="1d898xiwjmn1lhy6gdav7p0f7w1wrhi5545j6fi835nhfw53mphj"; depends=[Biostrings DNAcopy GenomicAlignments GenomicRanges IRanges Rsamtools stringr]; }; - MEAL = derive2 { name="MEAL"; version="1.32.0"; sha256="0vwb3wag7hsi25c9r4j1yp0lh5ssgnrdbw3f5gbkxswd3vi8sh2p"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 Gviz IRanges isva limma matrixStats minfi missMethyl MultiDataSet permute S4Vectors SmartSVA SummarizedExperiment vegan]; }; - MEAT = derive2 { name="MEAT"; version="1.14.0"; sha256="0hd1yv7vfxifhadn6v8wvri96j0v3b3wma0245ky9svh79baswd0"; depends=[dplyr dynamicTreeCut glmnet impute minfi RPMM stringr SummarizedExperiment tibble wateRmelon]; }; - MEB = derive2 { name="MEB"; version="1.16.0"; sha256="18vf3cyw5ld7a95ksa4g2v0rrcrdk0dyw0jjiyywd1kmnkkv8s8g"; depends=[e1071 edgeR scater SingleCellExperiment SummarizedExperiment wrswoR]; }; - MEDIPS = derive2 { name="MEDIPS"; version="1.54.0"; sha256="17girgyqcb6mxwkmbxdg7fn7sg2jddf5xgy7yl11gwa5a3k42ph8"; depends=[biomaRt Biostrings BSgenome DNAcopy edgeR GenomicRanges gtools IRanges preprocessCore Rsamtools rtracklayer]; }; - MEDME = derive2 { name="MEDME"; version="1.62.0"; sha256="01fyrfx7mfz2qb0lj92cxj2piy78zqfpi7gnw2x2bn4mdjqpqpjh"; depends=[Biostrings drc MASS]; }; - MEIGOR = derive2 { name="MEIGOR"; version="1.36.2"; sha256="09jxgppgshslj7fq6znh8qg81ys5mr0irqhbsaq9bpsbkq2d181b"; depends=[CNORode deSolve Rsolnp snowfall]; }; - MGFM = derive2 { name="MGFM"; version="1.36.0"; sha256="02a1w5m9840s0x700dwvpvq7f96fyygdjpsrcfxdfsr491zamc2r"; depends=[annotate AnnotationDbi]; }; - MGFR = derive2 { name="MGFR"; version="1.28.0"; sha256="08k1as0wh1a2z1d2m659y6khl2cqa6v6p6sxf913ak4kk3ibab0a"; depends=[annotate biomaRt]; }; - MICSQTL = derive2 { name="MICSQTL"; version="1.0.0"; sha256="1q711hvhf1cjvkyvifxcl5xmyrr4rxj6djxiqqdsyrwffsj9iy7g"; depends=[BiocParallel dirmult ggplot2 ggpubr ggridges glue magrittr nnls purrr S4Vectors SummarizedExperiment TCA TOAST]; }; - MIRA = derive2 { name="MIRA"; version="1.24.0"; sha256="03srd513r7l5xpvbv03vksddw1hqiwpqxzims85jvzdl2fvyikx2"; depends=[Biobase BiocGenerics bsseq data_table GenomicRanges ggplot2 IRanges S4Vectors]; }; - MLInterfaces = derive2 { name="MLInterfaces"; version="1.82.0"; sha256="0aga7xhx5d1xp09n2im7yqi9y1b3v22l554hi35ahg2lwwvxjiw1"; depends=[annotate Biobase BiocGenerics cluster fpc gbm gdata genefilter ggvis hwriter magrittr MASS mlbench pls RColorBrewer Rcpp rpart sfsmisc shiny SummarizedExperiment threejs]; }; - MLP = derive2 { name="MLP"; version="1.50.0"; sha256="0hh6q2x841dhdig1f2fg4y8wn1q25lvdznh0630qsz9ciaig94wh"; depends=[AnnotationDbi gplots]; }; - MLSeq = derive2 { name="MLSeq"; version="2.20.0"; sha256="1q6qwizqyfplyvkhbkp4m4ssmglkr26xdp8r79ana06hrc3k6hin"; depends=[Biobase caret DESeq2 edgeR foreach ggplot2 limma pamr plyr sSeq SummarizedExperiment testthat VennDiagram xtable]; }; - MMDiff2 = derive2 { name="MMDiff2"; version="1.30.0"; sha256="0lamw826kl57ffascr54cvjmxi70gqx21nnsfhdadbkqvzrcfwyh"; depends=[Biobase Biostrings BSgenome GenomicRanges ggplot2 locfit RColorBrewer Rsamtools S4Vectors shiny]; }; - MMUPHin = derive2 { name="MMUPHin"; version="1.16.0"; sha256="0lhvsx5yjvqh5d3h860sv8cf3h73nrzvljpkqrd9ks0irc4gcm6d"; depends=[cowplot dplyr fpc ggplot2 igraph Maaslin2 metafor stringr tidyr]; }; - MODA = derive2 { name="MODA"; version="1.28.0"; sha256="1axm6lfg6wv3rm35ajsc4cjaqbriyb4hzj3sr8ks6h131fn7sjw2"; depends=[AMOUNTAIN cluster dynamicTreeCut igraph RColorBrewer WGCNA]; }; - MOFA2 = derive2 { name="MOFA2"; version="1.12.1"; sha256="1vryfj2ikc0c3md2pg4jyg0n3jj6lh0rwm9069v42172pbwc0ikp"; depends=[basilisk corrplot cowplot DelayedArray dplyr forcats ggplot2 ggrepel HDF5Array magrittr pheatmap RColorBrewer reshape2 reticulate rhdf5 Rtsne stringi tidyr uwot]; }; - MOGAMUN = derive2 { name="MOGAMUN"; version="1.12.0"; sha256="0x7waxamd7hykjcphx4xhl392rjfp2pkhn98gpg60224am7yclav"; depends=[BiocParallel igraph RCy3 RUnit stringr]; }; - MOMA = derive2 { name="MOMA"; version="1.14.0"; sha256="1ksh2ikbzppcdncy0fi09kpkm13jrmnv7azpgjy51qns0525c9fc"; depends=[circlize cluster ComplexHeatmap dplyr ggplot2 magrittr MKmisc MultiAssayExperiment qvalue RColorBrewer readr reshape2 rlang stringr tibble tidyr]; }; - MOSim = derive2 { name="MOSim"; version="1.16.0"; sha256="0pwxkkkbw65142xp26lig3xmfcc11sb1kz68qnif716jqzd2y5a9"; depends=[Biobase dplyr ggplot2 HiddenMarkov IRanges lazyeval matrixStats purrr rlang S4Vectors scales stringi stringr tibble tidyr zoo]; }; - MPFE = derive2 { name="MPFE"; version="1.38.0"; sha256="08y87lg3xysycya2x5xz9ybm3x4vz7kblan9xaa42nf6fy92fs5i"; depends=[]; }; - MPRAnalyze = derive2 { name="MPRAnalyze"; version="1.20.0"; sha256="06v3lppp2qxpj0snrn42yyljkpsb5xd7gd6ziiiizs62wahg6g29"; depends=[BiocParallel progress SummarizedExperiment]; }; - MQmetrics = derive2 { name="MQmetrics"; version="1.10.0"; sha256="15jkmdj2k5h8vbi332y7b4xzm2330g2s13l6lf2d1v9pg5aqrisq"; depends=[cowplot dplyr ggforce gghalves ggplot2 ggpubr ggrepel gridExtra gtable knitr magrittr plyr purrr RColorBrewer readr reshape2 rlang rmarkdown scales stringr tidyr]; }; - MSA2dist = derive2 { name="MSA2dist"; version="1.6.0"; sha256="1y1d6rp9bcx9acc21rak0dh93dm06f7qv6zzy5nqd1dgs77vhb1s"; depends=[ape Biostrings doParallel dplyr foreach GenomicRanges IRanges Rcpp RcppThread rlang seqinr stringi stringr tibble tidyr]; }; - MSPrep = derive2 { name="MSPrep"; version="1.12.0"; sha256="1fbnvsrs1mka3ssr9imk0zgsjjrbl5nczhg1g8hzmvw7dj5fijhi"; depends=[crmn dplyr magrittr missForest pcaMethods preprocessCore rlang S4Vectors stringr SummarizedExperiment sva tibble tidyr VIM]; }; - MSnID = derive2 { name="MSnID"; version="1.36.0"; sha256="1hmfh7v7p5d741x2wh1njqwkmfmf3xmwkqy88kalrcjzrdwfpv9b"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics BiocStyle Biostrings data_table doParallel dplyr foreach ggplot2 iterators msmsTests MSnbase mzID mzR ProtGenerics purrr R_cache Rcpp reshape2 rlang RUnit stringr tibble xtable]; }; - MSnbase = derive2 { name="MSnbase"; version="2.28.1"; sha256="1622mmm5n8yl4qjq8bda7689qdfz1rhyxyh8s3q5475al1d0mpsl"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant MASS MsCoreUtils mzID mzR pcaMethods plyr ProtGenerics Rcpp S4Vectors scales vsn XML]; }; - MSstats = derive2 { name="MSstats"; version="4.10.1"; sha256="1y6063n1f00qn7hwsj87phdhi2bgp4frbmzkas2c1ps0ck83az17"; depends=[checkmate data_table ggplot2 ggrepel gplots htmltools limma lme4 marray MASS MSstatsConvert plotly preprocessCore Rcpp RcppArmadillo statmod survival]; }; - MSstatsBig = derive2 { name="MSstatsBig"; version="1.0.0"; sha256="0gaf22l8ccqff4vfy72s6swfp0p6675a83n1himpmh0nyb1mkwal"; depends=[arrow DBI dplyr MSstats MSstatsConvert readr sparklyr]; }; - MSstatsConvert = derive2 { name="MSstatsConvert"; version="1.12.1"; sha256="0psb7qm79nc6z8cp5fs8imnjxj2s5m2yvj7xr7kg8i2618jz83wa"; depends=[checkmate data_table log4r stringi]; }; - MSstatsLOBD = derive2 { name="MSstatsLOBD"; version="1.10.0"; sha256="1pvpvp3m76vrc1kwl8rniglkzqg8d6dv8kjidmp7mbpixljfa9yq"; depends=[ggplot2 minpack_lm Rcpp]; }; - MSstatsLiP = derive2 { name="MSstatsLiP"; version="1.8.1"; sha256="1n9z1xirkkglvivc19zqqvk5jwgzsm9424phldfj080p0aibjkmn"; depends=[Biostrings checkmate data_table dplyr factoextra ggplot2 ggpubr gridExtra MSstats MSstatsConvert MSstatsPTM purrr Rcpp scales stringr tibble tidyr tidyverse]; }; - MSstatsPTM = derive2 { name="MSstatsPTM"; version="2.4.4"; sha256="1v3b4a1q6zb12k80gcv8x2nwcya1n2jyzzli1wy1qwha56mxg8im"; depends=[Biostrings checkmate data_table dplyr ggplot2 ggrepel gridExtra MSstats MSstatsConvert MSstatsTMT Rcpp stringi stringr]; }; - MSstatsQC = derive2 { name="MSstatsQC"; version="2.20.0"; sha256="0lf12y4v4fjm105lnpvh832y018cnn7zxkvjncb4xy5qgvy59n42"; depends=[dplyr ggExtra ggplot2 MSnbase plotly qcmetrics]; }; - MSstatsQCgui = derive2 { name="MSstatsQCgui"; version="1.22.0"; sha256="033ld5kns6w0gi8h7fzwvhv297kk9dqay31i1336ab9zss3l7wyp"; depends=[dplyr ggExtra gridExtra MSstatsQC plotly shiny]; }; - MSstatsShiny = derive2 { name="MSstatsShiny"; version="1.4.3"; sha256="0wga58icd7n75n6bdsk29sw1sq9dsydq29z0qvnvq623zwxq7yg3"; depends=[data_table dplyr DT ggplot2 ggrepel gplots Hmisc htmltools marray mockery MSstats MSstatsConvert MSstatsPTM MSstatsTMT plotly readxl shiny shinyBS shinybusy shinyjs tidyr uuid]; }; - MSstatsTMT = derive2 { name="MSstatsTMT"; version="2.10.0"; sha256="00ykgnzwx15szwiqlcdfpnfh40mryj3zlbix3pysxj44svvz1vz4"; depends=[checkmate data_table ggplot2 limma lme4 lmerTest MSstats MSstatsConvert]; }; - MVCClass = derive2 { name="MVCClass"; version="1.76.0"; sha256="16finp6q89n6x5q2v1khpfp5ys7d4dvlh3kacv5qbdh1bsb3fpax"; depends=[]; }; - MWASTools = derive2 { name="MWASTools"; version="1.26.0"; sha256="0h7c0w9adxrrbn7kd1p7pldcgwv3hmq957zkaa1q9asgdzmf4jd5"; depends=[boot car ComplexHeatmap ggplot2 glm2 gridExtra igraph KEGGgraph KEGGREST ppcor qvalue RCurl SummarizedExperiment]; }; - Maaslin2 = derive2 { name="Maaslin2"; version="1.16.0"; sha256="1d95dv46b36ncwb7zdn0wvshg4v73qjfs3hij0jmbkkxvf2il9iq"; depends=[biglm car chemometrics cplm data_table dplyr edgeR ggplot2 glmmTMB hash lme4 lmerTest logging MASS metagenomeSeq optparse pbapply pcaPP pheatmap pscl robustbase tibble vegan]; }; - Macarron = derive2 { name="Macarron"; version="1.6.0"; sha256="19zn8s6d6g9zaid77nkpy0fcvmvkxpgjzj435p8lj068mw4pi9b7"; depends=[BiocParallel data_table DelayedArray dynamicTreeCut ff logging Maaslin2 plyr psych RCurl RJSONIO SummarizedExperiment WGCNA xml2]; }; - MantelCorr = derive2 { name="MantelCorr"; version="1.72.0"; sha256="0jzng0vwsm47kjrvig57zkynvz71kz4xvi4fn4an71927mgh52j0"; depends=[]; }; - MassArray = derive2 { name="MassArray"; version="1.54.0"; sha256="1d1b1rvicm2p96qz47svwxl1jky37p7653545fh6j8nhzqlk68ng"; depends=[]; }; - MassSpecWavelet = derive2 { name="MassSpecWavelet"; version="1.68.0"; sha256="044rz2xsz2v8i9ha20hxn2cwf7wa74p5f25jql8ancp6r3gim9sy"; depends=[]; }; - MatrixGenerics = derive2 { name="MatrixGenerics"; version="1.14.0"; sha256="14x5jib5xh2006lg96v3b9n2pnbjcbsd5igqybqsv0c53rk9394d"; depends=[matrixStats]; }; - MatrixQCvis = derive2 { name="MatrixQCvis"; version="1.10.0"; sha256="0drpj0n1rvm77ls1rjkp17hi5x4rhwvjs6mywscsphn57xkjwjv9"; depends=[ComplexHeatmap dplyr ExperimentHub ggplot2 Hmisc htmlwidgets impute imputeLCMD limma MASS pcaMethods plotly proDA rlang rmarkdown Rtsne shiny shinydashboard shinyhelper shinyjs SummarizedExperiment tibble tidyr umap UpSetR vsn]; }; - MatrixRider = derive2 { name="MatrixRider"; version="1.34.0"; sha256="021z613zvk00j3bh4gx2lml4b2lbs7s5x582f7yb0x8k9mi1wij3"; depends=[Biostrings IRanges S4Vectors TFBSTools XVector]; }; - MeSHDbi = derive2 { name="MeSHDbi"; version="1.38.0"; sha256="132lmrfkjsdivavzksvbiwfskbmvybrgcm2ym2b9gghinldyfjr8"; depends=[AnnotationDbi Biobase RSQLite]; }; - MeasurementError_cor = derive2 { name="MeasurementError.cor"; version="1.74.0"; sha256="0hpcd026pw9xk0g2z25b7236daimy9rn21l3v58icrdzkgxk2xif"; depends=[]; }; - Melissa = derive2 { name="Melissa"; version="1.18.0"; sha256="0zz27dff78p5hysfvwqjjjjl6x5d5z222pfdx9cni4qnib4v1s36"; depends=[assertthat BiocStyle BPRMeth cowplot data_table doParallel foreach GenomicRanges ggplot2 magrittr matrixcalc mclust MCMCpack mvtnorm ROCR truncnorm]; }; - Mergeomics = derive2 { name="Mergeomics"; version="1.30.0"; sha256="0q324acmy6g02wq6s9qw0n643dfjl7cf9v1y7crk27liaqm0sj03"; depends=[]; }; - MesKit = derive2 { name="MesKit"; version="1.12.0"; sha256="16gwrj7i70bnfp69vaal08sq8brcwjj48jaaizz5ch8i9rwhwyb6"; depends=[AnnotationDbi ape Biostrings circlize ComplexHeatmap cowplot data_table dplyr ggplot2 ggrepel ggridges IRanges mclust phangorn pracma RColorBrewer S4Vectors tidyr]; }; - MetCirc = derive2 { name="MetCirc"; version="1.32.0"; sha256="1ilv3g6p1mjss6a0jc7ik2kr4h3gjsm1z6aawvs9wq4jcpy2d8r5"; depends=[amap circlize ggplot2 MsCoreUtils S4Vectors scales shiny Spectra]; }; - MetID = derive2 { name="MetID"; version="1.20.0"; sha256="13d5d6fansnqsv0bm4mxz6jwb41kkn0ay3p6s6w6j8xksaafl7ql"; depends=[ChemmineR devtools igraph Matrix stringr]; }; - MetNet = derive2 { name="MetNet"; version="1.20.0"; sha256="17086dx5zdcp5lflhrzfpcjxbimrkq4ylxgiwjb6r2qwkhx9vq44"; depends=[BiocParallel bnlearn corpcor dplyr GeneNet GENIE3 ggplot2 parmigene psych rlang S4Vectors stabs SummarizedExperiment tibble tidyr]; }; - MetaCyto = derive2 { name="MetaCyto"; version="1.24.0"; sha256="17fwdzxp9v9sm4rbyhh2zv5jhx1ax8cxls2b3g3yp9xk2hgwf816"; depends=[cluster fastcluster flowCore FlowSOM ggplot2 metafor tidyr]; }; - MetaNeighbor = derive2 { name="MetaNeighbor"; version="1.22.0"; sha256="0y8nk9jq0z48phg13mf6hsfg8l54w6z6b67g0k1c9gmsb7aqq04d"; depends=[beanplot dplyr ggplot2 gplots igraph Matrix matrixStats RColorBrewer SingleCellExperiment SummarizedExperiment tibble tidyr]; }; - MetaPhOR = derive2 { name="MetaPhOR"; version="1.4.0"; sha256="1nzwhjcs35bz626b1i3akdfvvshmw3aj6ghrgsfhir4fw8rvdig5"; depends=[clusterProfiler ggplot2 ggrepel pheatmap RCy3 RecordLinkage stringr]; }; - MetaboAnnotation = derive2 { name="MetaboAnnotation"; version="1.6.1"; sha256="1galm8z0gz6mkqy9gr6ynhbpxbxngbrvg6p6kp3mywn6h9m7p8vv"; depends=[AnnotationHub BiocGenerics BiocParallel CompoundDb MetaboCoreUtils MsCoreUtils ProtGenerics QFeatures S4Vectors Spectra SummarizedExperiment]; }; - MetaboCoreUtils = derive2 { name="MetaboCoreUtils"; version="1.10.0"; sha256="0bs24dwqlm8isp231jds51l7v16q0gjli1qmhjxyva3qmi5yb4dl"; depends=[MsCoreUtils]; }; - MetaboSignal = derive2 { name="MetaboSignal"; version="1.32.1"; sha256="1x28992n37fxqhxi9kaj80457lr8dzy780k8ja27gniid4x20gdm"; depends=[AnnotationDbi biomaRt EnsDb_Hsapiens_v75 hpar igraph KEGGgraph KEGGREST MWASTools mygene org_Hs_eg_db RCurl]; }; - MethPed = derive2 { name="MethPed"; version="1.30.0"; sha256="1xhaf7zhwga86max98hi5zq4d7dl8rcvky3p9pxzw7ld5s6n9r2j"; depends=[Biobase randomForest]; }; - MethReg = derive2 { name="MethReg"; version="1.12.0"; sha256="1hql25dlvr7f923zngyymacdpz3zvsrzzvmc4rdc5a7w4y7ibl2n"; depends=[AnnotationHub DelayedArray dplyr ExperimentHub GenomicRanges ggplot2 ggpubr IRanges MASS Matrix plyr progress pscl readr rlang S4Vectors sesame sesameData sfsmisc stringr SummarizedExperiment tibble tidyr]; }; - MethTargetedNGS = derive2 { name="MethTargetedNGS"; version="1.34.0"; sha256="05s8zpiqpw5qx5k2qf3vkxj69ag67gkl5mb8dxq7jpwzx51kdvwc"; depends=[Biostrings gplots seqinr stringr]; }; - MethylAid = derive2 { name="MethylAid"; version="1.36.0"; sha256="0mzml9j6f7yycf9747ikkpfvxnwji07h8jhwa9a54ix2d0wyxk3d"; depends=[Biobase BiocGenerics BiocParallel ggplot2 gridBase hexbin matrixStats minfi RColorBrewer shiny SummarizedExperiment]; }; - MethylMix = derive2 { name="MethylMix"; version="2.32.0"; sha256="14qh696ya8g1ay4iwypcacfrvql3iw9b0pp7mn85hb5ppfsrjqfr"; depends=[data_table digest foreach ggplot2 impute limma R_matlab RColorBrewer RCurl RPMM]; }; - MethylSeekR = derive2 { name="MethylSeekR"; version="1.42.0"; sha256="0zsiaqz7awb94cazm3dn1bykwjgaw674q14p05dfgjpyjr7zxdgf"; depends=[BSgenome geneplotter GenomicRanges IRanges mhsmm rtracklayer]; }; - Mfuzz = derive2 { name="Mfuzz"; version="2.62.0"; sha256="0v2l3fi9331lxfam6az265rfk52g4n75hh4rg12ykhp86ihplzpf"; depends=[Biobase e1071 tkWidgets]; }; - MiChip = derive2 { name="MiChip"; version="1.56.0"; sha256="0ig5c7fbgjpabvx7m5x6ki08cg0vdhkyd8g5yb36y2w580qi55sn"; depends=[Biobase]; }; - MiPP = derive2 { name="MiPP"; version="1.74.0"; sha256="1zv1yx310mjzm215vr78765s3dl8srs6mrs20dajnim09qkfshc2"; depends=[Biobase e1071 MASS]; }; - MiRaGE = derive2 { name="MiRaGE"; version="1.44.0"; sha256="1zl1xpcgsdrlfvrfbxlgz9y09mrqv91128xywajbaljrb8r2wqka"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager S4Vectors]; }; - MicrobiomeProfiler = derive2 { name="MicrobiomeProfiler"; version="1.8.0"; sha256="1xl1kx89jgf68gdq23aflgcfyqy584gdm35237dvbqgra4aizlad"; depends=[clusterProfiler config DT enrichplot ggplot2 golem gson htmltools magrittr shiny shinycustomloader shinyWidgets]; }; - MicrobiotaProcess = derive2 { name="MicrobiotaProcess"; version="1.14.0"; sha256="0gkjg3pqdwfxf203wwxags1xh91rb2rry5f6j1y8ah2bsky15z0l"; depends=[ape Biostrings cli coin data_table dplyr dtplyr foreach ggfun ggplot2 ggrepel ggsignif ggstar ggtree ggtreeExtra magrittr MASS patchwork pillar plyr rlang SummarizedExperiment tibble tidyr tidyselect tidytree treeio vegan zoo]; }; - MineICA = derive2 { name="MineICA"; version="1.42.0"; sha256="1czahm7d4cyic4n2h60pkyymapw79v1dd34qc3c6his9h33mhw35"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi lumiHumanAll_db marray mclust plyr RColorBrewer Rgraphviz scales xtable]; }; - MinimumDistance = derive2 { name="MinimumDistance"; version="1.46.0"; sha256="1gbvjq5xk7q1m10m8mmy2fxrh49q25xik0jmvjln8lng8n98xviz"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; }; - MobilityTransformR = derive2 { name="MobilityTransformR"; version="1.6.0"; sha256="1292fk08zi1zf0hdj56vzdgv9h9nr16vmbzypqkam7lvqqnig49h"; depends=[MetaboCoreUtils MSnbase Spectra xcms]; }; - ModCon = derive2 { name="ModCon"; version="1.10.0"; sha256="179z85phvkpld0hirigx2nf2sy0y0jsqxgml4s1rkircfm6768jw"; depends=[data_table]; }; - Modstrings = derive2 { name="Modstrings"; version="1.18.0"; sha256="1jjawwkvdx02ss2vw4ah2b8psgxr01z6r1rkr2pnkmrp2ma7ygks"; depends=[BiocGenerics Biostrings crayon GenomicRanges IRanges S4Vectors stringi stringr XVector]; }; - MoleculeExperiment = derive2 { name="MoleculeExperiment"; version="1.2.2"; sha256="1863f9ig7j5q7dnrdx3lbwck4g48ac81yqa2054fyhq9xcqaxa2b"; depends=[BiocParallel cli data_table dplyr EBImage ggplot2 magrittr Matrix purrr rhdf5 rjson rlang S4Vectors SpatialExperiment terra]; }; - Moonlight2R = derive2 { name="Moonlight2R"; version="1.0.0"; sha256="02g9dszw9f1q0maxm4ik7p22w4flxv1wx95dy6i541kh26ma61p3"; depends=[AnnotationHub Biobase circlize clusterProfiler ComplexHeatmap doParallel DOSE dplyr easyPubMed foreach fuzzyjoin GenomicRanges GEOquery gplots HiveR magrittr org_Hs_eg_db parmigene purrr qpdf randomForest RColorBrewer readr RISmed rtracklayer seqminer stringr tibble tidyHeatmap tidyr]; }; - MoonlightR = derive2 { name="MoonlightR"; version="1.28.0"; sha256="1zmmxjig7kmfw50p7pdy0v6p3kcfjl655svg8yrlap9y750bywzr"; depends=[Biobase circlize clusterProfiler doParallel DOSE foreach GEOquery gplots HiveR limma parmigene randomForest RColorBrewer RISmed SummarizedExperiment TCGAbiolinks]; }; - Motif2Site = derive2 { name="Motif2Site"; version="1.6.0"; sha256="0s659f3py10d4qwvv325jydix6wjndhwnhi89jip5r8nqp6svih4"; depends=[BiocGenerics Biostrings BSgenome edgeR GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS mixtools S4Vectors]; }; - MotifDb = derive2 { name="MotifDb"; version="1.44.0"; sha256="1z72f5f3sh2ak6zjcfc6j6rblkllmdkli0kb57nwxg2j5hrys3xr"; depends=[BiocGenerics Biostrings GenomicRanges IRanges rtracklayer S4Vectors splitstackshape]; }; - MouseFM = derive2 { name="MouseFM"; version="1.12.0"; sha256="1mr0mm9hsb672sx0zin3mcz4sswydp4j3vb0sqy83169pbkd1050"; depends=[biomaRt curl data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gtools httr IRanges jsonlite reshape2 rlist scales tidyr]; }; - MsBackendMassbank = derive2 { name="MsBackendMassbank"; version="1.10.1"; sha256="18s754jp3nlczmlyva2izr9qf2d9hmpnns3g6rpqy2nxj6zsqxdd"; depends=[BiocParallel DBI IRanges MsCoreUtils ProtGenerics S4Vectors Spectra]; }; - MsBackendMgf = derive2 { name="MsBackendMgf"; version="1.10.0"; sha256="0yzxfar77j0byq91hpnffgzvi3i7c06i2lm0myq4dg2b228hxqyl"; depends=[BiocParallel IRanges MsCoreUtils S4Vectors Spectra]; }; - MsBackendMsp = derive2 { name="MsBackendMsp"; version="1.6.0"; sha256="1z36lsgmn2gbwmmazxj51rf7bkjk6b6kkfpqp71c05k40vc8nx4y"; depends=[BiocParallel IRanges MsCoreUtils S4Vectors Spectra]; }; - MsBackendRawFileReader = derive2 { name="MsBackendRawFileReader"; version="1.8.1"; sha256="0kh740c3d59a8l5b19j1mxyzvpla915a9p7qalmqn6qk5dmnjd30"; depends=[BiocParallel IRanges MsCoreUtils rawrr S4Vectors Spectra]; }; - MsBackendSql = derive2 { name="MsBackendSql"; version="1.2.0"; sha256="1j484ypgcyhgpvb8m97d954bljddl87hw6vzrcz610jbi26m7ia0"; depends=[BiocGenerics BiocParallel data_table DBI IRanges MsCoreUtils progress ProtGenerics S4Vectors Spectra]; }; - MsCoreUtils = derive2 { name="MsCoreUtils"; version="1.14.1"; sha256="0l6rdkpg89pds3n5y4khvaifgbvm38n0vlpi15h97rnk8x461rsz"; depends=[clue MASS Rcpp S4Vectors]; }; - MsDataHub = derive2 { name="MsDataHub"; version="1.2.0"; sha256="03fkikbz13vfcdlca7kassprjjf2gb8jmism3kinpf0x291fc7cr"; depends=[ExperimentHub]; }; - MsExperiment = derive2 { name="MsExperiment"; version="1.4.0"; sha256="06m0i60zh3xjqmsz6dpp0il833xzdfj0fm6xbhl7kmicvfrcnyfg"; depends=[IRanges ProtGenerics QFeatures S4Vectors Spectra SummarizedExperiment]; }; - MsFeatures = derive2 { name="MsFeatures"; version="1.10.0"; sha256="0vpsc7i6j2skn6wba178iy406yvd4p8xf3lq2qmm2inimxl983cs"; depends=[MsCoreUtils ProtGenerics SummarizedExperiment]; }; - MsQuality = derive2 { name="MsQuality"; version="1.2.1"; sha256="1505n807w2q0l9nczxniscy28kyc0rhpdpcbkmv9lh04hp128xq3"; depends=[BiocParallel ggplot2 htmlwidgets msdata MsExperiment plotly ProtGenerics rmzqc shiny shinydashboard Spectra stringr tibble tidyr]; }; - MuData = derive2 { name="MuData"; version="1.6.0"; sha256="0fifviwyryms2355gv2m2psn7nkgswzpfa53q4ybrh05qigb2hsx"; depends=[DelayedArray Matrix MultiAssayExperiment rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; }; - Mulcom = derive2 { name="Mulcom"; version="1.52.0"; sha256="15svf18a5r4hdpc69wmbihdg6hns5mmzrklh0sd6wjq72z8ij3j5"; depends=[Biobase fields]; }; - MultiAssayExperiment = derive2 { name="MultiAssayExperiment"; version="1.28.0"; sha256="0dmhqymh800mljcpdf817nbyg20czp8y9bg13p3r4bfj6axxckch"; depends=[Biobase BiocBaseUtils BiocGenerics DelayedArray GenomicRanges IRanges S4Vectors SummarizedExperiment tidyr]; }; - MultiBaC = derive2 { name="MultiBaC"; version="1.12.0"; sha256="1mwfibakrxgs3r572bqqqmzq7ys6cs0bpn0wfrcb08ww2197xc4j"; depends=[ggplot2 Matrix MultiAssayExperiment pcaMethods plotrix ropls]; }; - MultiDataSet = derive2 { name="MultiDataSet"; version="1.30.0"; sha256="1n17bpzj95hkljvgqpyv92jm4bk1d3j3mdg7106pb3dffvwv52sk"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggrepel IRanges limma qqman S4Vectors SummarizedExperiment]; }; - MultiMed = derive2 { name="MultiMed"; version="2.24.0"; sha256="0fxfhqyald2z7g3yqw9w1haxhlfvcfrxwlljg2s0a9b7rpryq14r"; depends=[]; }; - MultiRNAflow = derive2 { name="MultiRNAflow"; version="1.0.0"; sha256="1vbqhd3hbna8l643v6q2la90pkbwa8whxvndyb9snqavwbqq2zjy"; depends=[Biobase ComplexHeatmap DESeq2 factoextra FactoMineR ggalluvial ggplot2 ggrepel ggsci gprofiler2 Mfuzz plot3D plot3Drgl plyr RColorBrewer reshape2 rlang S4Vectors scales SummarizedExperiment UpSetR]; }; - MultimodalExperiment = derive2 { name="MultimodalExperiment"; version="1.2.0"; sha256="19jpax2l69dayhm9pddbg4q7bq9c4xaxdfif93pw6kq63l8g2c1d"; depends=[BiocGenerics IRanges MultiAssayExperiment S4Vectors]; }; - MungeSumstats = derive2 { name="MungeSumstats"; version="1.10.1"; sha256="0q7ifxxi1bgis1l24dna6xwra48c4lajajs48vlwj3iaa5nsicfk"; depends=[Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicRanges googleAuthR httr IRanges jsonlite magrittr R_utils RCurl rtracklayer stringr VariantAnnotation]; }; - MutationalPatterns = derive2 { name="MutationalPatterns"; version="3.12.0"; sha256="19ya4ax6pa727hdn0118l9pwa9dxgh89dz54mm66dawxga3jhar4"; depends=[BiocGenerics Biostrings BSgenome cowplot dplyr GenomeInfoDb GenomicRanges ggalluvial ggdendro ggplot2 IRanges magrittr NMF pracma purrr RColorBrewer S4Vectors stringr tibble tidyr VariantAnnotation]; }; - NADfinder = derive2 { name="NADfinder"; version="1.26.0"; sha256="1ig27q6cww3b0gjxd3abj026znry32q4jfmgv2wh1icb2rp1xxxq"; depends=[ATACseqQC baseline BiocGenerics corrplot csaw EmpiricalBrownsMethod GenomeInfoDb GenomicAlignments GenomicRanges IRanges limma metap Rsamtools rtracklayer S4Vectors signal SummarizedExperiment trackViewer]; }; - NBAMSeq = derive2 { name="NBAMSeq"; version="1.18.0"; sha256="0msk3hpm4169q1ldfmi1kfh1b5q1wah8x2shlcsmgr2987vl4war"; depends=[BiocParallel DESeq2 genefilter mgcv S4Vectors SummarizedExperiment]; }; - NCIgraph = derive2 { name="NCIgraph"; version="1.50.0"; sha256="12k9r30a36vn7vpzl0vrhsgyjjm64n5x0c7jfmq2f6c0qkxfn6v6"; depends=[graph KEGGgraph R_oo RBGL RCy3]; }; - NOISeq = derive2 { name="NOISeq"; version="2.46.0"; sha256="0qs0sc47n3p9wmf5cmc39cb30i8pbsyizhr29b3ld197pi1ba5wb"; depends=[Biobase Matrix]; }; - NPARC = derive2 { name="NPARC"; version="1.14.0"; sha256="014zrhmkhfhiblahq124qm8ws2m595ycji9jcpxg9l895nagpx9h"; depends=[BiocParallel broom dplyr magrittr MASS rlang tidyr]; }; - NTW = derive2 { name="NTW"; version="1.52.0"; sha256="17327zp220xzfg5f48kkfkmmwdk75gggp56nirj7lywwwp2mx76s"; depends=[mvtnorm]; }; - NanoMethViz = derive2 { name="NanoMethViz"; version="2.8.1"; sha256="0rwwb8y99h5rq1fxyqs7j3kc2vfmjxkbiv2wp7ndp373xjij0rcz"; depends=[AnnotationDbi assertthat BiocSingular Biostrings bsseq cli cpp11 data_table dbscan dplyr e1071 forcats fs GenomicRanges ggplot2 ggrastr glue IRanges limma patchwork purrr R_utils Rcpp readr rlang Rsamtools S4Vectors scales scico stringr SummarizedExperiment tibble tidyr withr zlibbioc]; }; - NanoStringDiff = derive2 { name="NanoStringDiff"; version="1.32.0"; sha256="08xq7yiga7225ld9xz7wwshb541kr5fclci94w4vzg13hwvs6x6v"; depends=[Biobase matrixStats Rcpp]; }; - NanoStringNCTools = derive2 { name="NanoStringNCTools"; version="1.10.0"; sha256="0zrv51vbsdf2m74bd0syd0qka9f4fm0i3479z2w4p1k5ima7az5j"; depends=[Biobase BiocGenerics Biostrings ggbeeswarm ggiraph ggplot2 ggthemes IRanges pheatmap RColorBrewer S4Vectors]; }; - NanoTube = derive2 { name="NanoTube"; version="1.8.0"; sha256="1wdhg25hmgypr5y18x88sgjdf296k5ci0k9fvbjhsi75dsyy00bv"; depends=[Biobase fgsea ggplot2 limma reshape]; }; - Nebulosa = derive2 { name="Nebulosa"; version="1.12.1"; sha256="11wn6l27cshhb1djsgqaqr8d33j4bipy0w0gafp3fkvg7mnpnhps"; depends=[ggplot2 ggrastr ks Matrix patchwork SeuratObject SingleCellExperiment SummarizedExperiment]; }; - NetActivity = derive2 { name="NetActivity"; version="1.4.0"; sha256="0jij69065vkmr7ba898h44vyacpkmbqc1pr3c6frvwjqwazvdr4k"; depends=[airway DelayedArray DelayedMatrixStats DESeq2 NetActivityData SummarizedExperiment]; }; - NetPathMiner = derive2 { name="NetPathMiner"; version="1.38.0"; sha256="1nppjwxvd8qgajhcs2yzch3k1r1mvvqb9sy94cpr74iga8m487nh"; depends=[igraph]; }; - NetSAM = derive2 { name="NetSAM"; version="1.42.0"; sha256="1y9k37pq10dp5bp847hlsr2sl71ygvzsd4naqg65lpklg9zrc8la"; depends=[AnnotationDbi biomaRt DBI doParallel foreach GO_db igraph R2HTML seriation survival WGCNA]; }; - NeuCA = derive2 { name="NeuCA"; version="1.8.1"; sha256="0763s4lii2wjd42b0gi4s0h7n4as0b3dbyz5v1n5ax22dpn2snj8"; depends=[e1071 kableExtra keras limma SingleCellExperiment]; }; - NewWave = derive2 { name="NewWave"; version="1.12.0"; sha256="1d3kvrkjl9dhwxsvr69zryp4mz6dggzgzrbiab5wkm3n9qvvgf84"; depends=[BiocSingular DelayedArray irlba Matrix SharedObject SingleCellExperiment SummarizedExperiment]; }; - NoRCE = derive2 { name="NoRCE"; version="1.14.0"; sha256="1b21mmmn26q17si2m1h8635a3ksnn38ajlm4mv41vaii7v8h11zv"; depends=[AnnotationDbi biomaRt DBI dbplyr dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 GO_db igraph IRanges KEGGREST png RCurl reactome_db readr reshape2 RSQLite rtracklayer rWikiPathways S4Vectors stringr SummarizedExperiment tidyr zlibbioc]; }; - NormalyzerDE = derive2 { name="NormalyzerDE"; version="1.20.0"; sha256="1cgm9iivnn1xx1m0shac4i8cm9ar2f965wyrs6ifj41n0scqyns2"; depends=[ape Biobase car ggforce ggplot2 limma MASS matrixStats preprocessCore SummarizedExperiment vsn]; }; - NormqPCR = derive2 { name="NormqPCR"; version="1.48.0"; sha256="19iw77aqv4j54m3f955xm4bg4jbxy0aavqys0dias26f4x8a29n7"; depends=[Biobase qpcR RColorBrewer ReadqPCR]; }; - NuPoP = derive2 { name="NuPoP"; version="2.10.0"; sha256="1kmnm3dyscbavdkfwwp0s7xqngz6gma7475f891jgsav12xh7zwf"; depends=[]; }; - OCplus = derive2 { name="OCplus"; version="1.76.0"; sha256="16pcqcbw8xha1xi4a03f9hpfcp1qx6qcssh1hz99sjjj5zila8rp"; depends=[interp multtest]; }; - OGRE = derive2 { name="OGRE"; version="1.6.0"; sha256="1m7nq27wfajaggbbrgdjxf8hmf4ppjm5sxyp5rhg090286xb093i"; depends=[AnnotationHub assertthat data_table DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges rtracklayer S4Vectors shiny shinyBS shinydashboard shinyFiles tidyr]; }; - OLIN = derive2 { name="OLIN"; version="1.80.0"; sha256="1wsja358i36kxqnc632hpf87v7ikss8vxplbbg1m9cgy6hg9d0yr"; depends=[limma locfit marray]; }; - OLINgui = derive2 { name="OLINgui"; version="1.76.0"; sha256="07ivdgfa471n67mx93yr66x0gx4ldym8wcxavkqj7xlx2dcmm677"; depends=[marray OLIN tkWidgets widgetTools]; }; - OMICsPCA = derive2 { name="OMICsPCA"; version="1.20.0"; sha256="0dmqv5k00nxwryc5093y2z25zcnwz5rvndsfirpzh0276x2fbhis"; depends=[cluster clValid corrplot cowplot data_table factoextra FactoMineR fpc GenomeInfoDb ggplot2 HelloRanges IRanges kableExtra magick MASS MultiAssayExperiment NbClust OMICsPCAdata pdftools PerformanceAnalytics reshape2 rgl rmarkdown rtracklayer tidyr]; }; - OPWeight = derive2 { name="OPWeight"; version="1.24.0"; sha256="1gchiws3h190xh13v3iry96mc27fan7lf82laxc78p9h1kcn1bcs"; depends=[MASS qvalue tibble]; }; - ORFhunteR = derive2 { name="ORFhunteR"; version="1.10.0"; sha256="0qg69zp85ggnzhjh8y3zfbdpqi5awsqaga9q970g8793xwkpa6dr"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg38 data_table Peptides randomForest Rcpp rtracklayer stringr xfun]; }; - ORFik = derive2 { name="ORFik"; version="1.22.2"; sha256="0wxgccq9bay64aypnqli6d97fk8mcxgzdyrww81zi5cn0c6ca07y"; depends=[AnnotationDbi BiocGenerics BiocParallel biomaRt biomartr Biostrings BSgenome cowplot curl data_table DESeq2 downloader fst GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gridExtra httr IRanges jsonlite R_utils Rcpp RCurl Rsamtools rtracklayer S4Vectors SummarizedExperiment withr XML xml2]; }; - OSAT = derive2 { name="OSAT"; version="1.50.0"; sha256="0kga066z3yn2c94kgfvl2a4dklgys064jbml7ccxbf3dzqgivxm1"; depends=[]; }; - OTUbase = derive2 { name="OTUbase"; version="1.52.0"; sha256="0j38wvsfmkvnrmfi2i8vawq8w46i5yrcqn7hikqbv83x47bzspzg"; depends=[Biobase Biostrings IRanges S4Vectors ShortRead vegan]; }; - OUTRIDER = derive2 { name="OUTRIDER"; version="1.20.0"; sha256="1yrsykqascy0533wwd0c8b6h1gn0bpzxik1jv0vp2055pzb2z4yc"; depends=[BBmisc BiocGenerics BiocParallel data_table DESeq2 generics GenomicFeatures GenomicRanges ggplot2 heatmaply IRanges matrixStats pcaMethods pheatmap plotly plyr PRROC RColorBrewer Rcpp RcppArmadillo reshape2 S4Vectors scales SummarizedExperiment]; }; - OVESEG = derive2 { name="OVESEG"; version="1.18.0"; sha256="10pax0snvz5rk3siidaydgcb0cl0phx5wxdshzn3lbkfpw0psvj0"; depends=[BiocParallel fdrtool limma Rcpp SummarizedExperiment]; }; - OmaDB = derive2 { name="OmaDB"; version="2.18.0"; sha256="1ngy8m94nq3nxxsj5vmvj86z3yrkfl1am14szn4w39q7spdlzcg7"; depends=[ape Biostrings GenomicRanges httr IRanges jsonlite plyr topGO]; }; - OmicCircos = derive2 { name="OmicCircos"; version="1.40.0"; sha256="1nsznyfkrbmgcr1fbpirzsy4sriw9knnxczdggfxbmkf0hd5a89c"; depends=[GenomicRanges]; }; - Omixer = derive2 { name="Omixer"; version="1.12.0"; sha256="02k6qvx4qxlcwp6qxx87a4rgmrqjp13w9xghc09zw4bzikwxnl0s"; depends=[dplyr forcats ggplot2 gridExtra magrittr readr stringr tibble tidyselect]; }; - OmnipathR = derive2 { name="OmnipathR"; version="3.10.1"; sha256="1wbzb4kh7bzsvixr3vxzih9rfkpjx00f33i0yl0dqj0yixnrghwr"; depends=[checkmate crayon curl digest dplyr httr igraph jsonlite later logger lubridate magrittr progress purrr rappdirs readr readxl rlang rmarkdown rvest stringi stringr tibble tidyr tidyselect withr xml2 yaml]; }; - OncoScore = derive2 { name="OncoScore"; version="1.30.0"; sha256="1v6x896ksp1qhgw3rbqciv9a0ivjvfhi6pdslyq6b9g1k5wranrk"; depends=[biomaRt]; }; - OncoSimulR = derive2 { name="OncoSimulR"; version="4.4.0"; sha256="16rvb5jp7fif00i2yvlc0ksr6x5q5y3qy6zlv03c9b90inlnfgvk"; depends=[car data_table dplyr ggplot2 ggrepel graph gtools igraph RColorBrewer Rcpp Rgraphviz smatr stringr]; }; - OpenStats = derive2 { name="OpenStats"; version="1.14.0"; sha256="1x5b3c8z2l6y6q6p2d9zmbci3xqxgiam4yd877ggxlirycnv20gv"; depends=[AICcmodavg car Hmisc jsonlite knitr MASS nlme rlist summarytools]; }; - OrderedList = derive2 { name="OrderedList"; version="1.74.0"; sha256="0pp27bp0vbwicd9qlwx4mym6rxfvrki113wk2gwrcc8j6pmwchpa"; depends=[Biobase twilight]; }; - Organism_dplyr = derive2 { name="Organism.dplyr"; version="1.30.1"; sha256="1s55fiqgxrdznn43qhm5yv9gp8d1msr2f39wxih0b5bm4wxhkq45"; depends=[AnnotationDbi AnnotationFilter BiocFileCache DBI dbplyr dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges rlang RSQLite S4Vectors tibble]; }; - OrganismDbi = derive2 { name="OrganismDbi"; version="1.44.0"; sha256="0g75y21lqmwsh28nx99zp2gxr6rhlhbw76f66qx5hrh6bm2zpm7j"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager DBI GenomicFeatures GenomicRanges graph IRanges RBGL S4Vectors]; }; - Oscope = derive2 { name="Oscope"; version="1.32.0"; sha256="1li2l9mdq2q0580a7qzvfid5n15v62fr9ys87j42k3l2w5a26smf"; depends=[BiocParallel cluster EBSeq testthat]; }; - OutSplice = derive2 { name="OutSplice"; version="1.2.0"; sha256="1ssah22igm7mmpjs3qdcnc7d6ysvb5vl3van18vdqmv1njdf7804"; depends=[AnnotationDbi GenomicFeatures GenomicRanges IRanges org_Hs_eg_db Repitools S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - PAA = derive2 { name="PAA"; version="1.36.0"; sha256="0jfvkgpw60p8p1lmlkzrv4iv8fshpn74q1v8crsm098gz1x0n052"; depends=[e1071 gplots gtools limma MASS mRMRe randomForest Rcpp ROCR sva]; }; - PADOG = derive2 { name="PADOG"; version="1.44.0"; sha256="0yyca2k5fml0gc69i3fa67f7avkb7md0ylb0rvnhmf4srgb7ca67"; depends=[AnnotationDbi Biobase doRNG foreach GSA hgu133a_db hgu133plus2_db KEGGdzPathwaysGEO KEGGREST limma nlme]; }; - PAIRADISE = derive2 { name="PAIRADISE"; version="1.18.0"; sha256="1z17cxvsvi7lapbrqglsl126djlsqp4bwfagvhpi8hrpg85fqppr"; depends=[abind BiocParallel nloptr S4Vectors SummarizedExperiment]; }; - PANR = derive2 { name="PANR"; version="1.48.0"; sha256="0w7x8lldarjgl7a0pbkyphrhkv18ngcc1psx1j1v20c8bxdidbws"; depends=[igraph MASS pvclust RedeR]; }; - PAST = derive2 { name="PAST"; version="1.18.0"; sha256="11vbgj1961ml6jvynsap6rybirijjs125v9m15knvirb8l7fa265"; depends=[doParallel dplyr foreach GenomicRanges ggplot2 iterators qvalue rlang rtracklayer S4Vectors]; }; - PCAN = derive2 { name="PCAN"; version="1.30.0"; sha256="0hsxy2xny0ds712dniw8szlnnn9cpxn23hdzxashn5qh688xjwyk"; depends=[BiocParallel]; }; - PCAtools = derive2 { name="PCAtools"; version="2.14.0"; sha256="18rzv4kldjmm2zvz9pzrpspig2hy6mcvb45hgmw49ba4jdcxh31s"; depends=[beachmat BH BiocParallel BiocSingular cowplot DelayedArray DelayedMatrixStats dqrng ggplot2 ggrepel lattice Matrix Rcpp reshape2]; }; - PDATK = derive2 { name="PDATK"; version="1.10.0"; sha256="0jxah3jwwpkzp50gyc1200ndmwvn5s59pvv1c3xcnr8d8wyvsb5a"; depends=[BiocGenerics BiocParallel caret clusterRepro ConsensusClusterPlus CoreGx data_table dplyr genefu ggplot2 ggplotify igraph MatrixGenerics matrixStats MultiAssayExperiment piano plyr pROC RColorBrewer reportROC rlang S4Vectors scales SummarizedExperiment survcomp survival survminer switchBox verification]; }; - PECA = derive2 { name="PECA"; version="1.38.0"; sha256="05znla8cngj9k7yfx3k9wqcyrbp05f0dpddjvncgcnazp5jvq1g8"; depends=[affy aroma_affymetrix aroma_core genefilter limma preprocessCore ROTS]; }; - PICS = derive2 { name="PICS"; version="2.46.0"; sha256="0rpdi8s5l9hz5p1r688ngqq07cddqjcbl3ingl4a0jhl8k3rrznb"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools]; }; - PING = derive2 { name="PING"; version="2.46.0"; sha256="1i5vcjplck3phgwy72rcpi2xf4nwkd57lv81pl7wx2lr4yls7jw3"; depends=[BiocGenerics BSgenome fda GenomicRanges Gviz IRanges PICS S4Vectors]; }; - PLPE = derive2 { name="PLPE"; version="1.62.0"; sha256="0ygh6awl73h0ykzcng6l2gxphgjivgswbk76xmlq53458sz12kv1"; depends=[Biobase LPE MASS]; }; - POMA = derive2 { name="POMA"; version="1.12.0"; sha256="08drgm5n5b6qhxs6znc9adfl8rlfrsqbv9j0lsj7lbi2kism1xc3"; depends=[broom caret ComplexHeatmap dbscan DESeq2 dplyr ggplot2 ggrepel glasso glmnet impute limma magrittr mixOmics randomForest RankProd rmarkdown SummarizedExperiment tibble tidyr uwot vegan]; }; - POWSC = derive2 { name="POWSC"; version="1.10.0"; sha256="1qkbzc61kr5kpc4z2z8yfhwvxyvhm6x297zfjzn6a1c16g3hy3p0"; depends=[Biobase ggplot2 limma MAST pheatmap RColorBrewer SingleCellExperiment SummarizedExperiment]; }; - PPInfer = derive2 { name="PPInfer"; version="1.28.0"; sha256="141hc0gl52869labiryr8ar763hqrxqxjxbi6s1nlj96d601s8sm"; depends=[biomaRt fgsea ggplot2 httr igraph kernlab STRINGdb yeastExpData]; }; - PREDA = derive2 { name="PREDA"; version="1.48.0"; sha256="1n8nlkhfbhisq62b382ydj9k4yrpiq0niqhj56rj3vz9p56gkx1p"; depends=[annotate Biobase lokern multtest]; }; - PROMISE = derive2 { name="PROMISE"; version="1.54.0"; sha256="0hscmk80mk47ay9l0s1jw1z9zaxxxv5r1n0057pmlpwbxvsck94p"; depends=[Biobase GSEABase]; }; - PROPER = derive2 { name="PROPER"; version="1.34.0"; sha256="1fmj6g9rjxr4i0480gzwfnmz0pn66pbyz3cy1wxwwfhpna24bi62"; depends=[edgeR]; }; - PROPS = derive2 { name="PROPS"; version="1.24.0"; sha256="1kc2f3syvm16hckv8bgipbmjfvdfhkz1zlm8hhyc6hvqhvl81973"; depends=[Biobase bnlearn reshape2 sva]; }; - PROcess = derive2 { name="PROcess"; version="1.78.0"; sha256="0hwhkz5qnwwgzmjf44qqfnrbqg8gl20rk0dc1ymjyah79lyn1vpj"; depends=[Icens]; }; - PSEA = derive2 { name="PSEA"; version="1.36.0"; sha256="02gnxacnpzz74bk4y4nkd6pd8y8abi0988zf03x1mcgnn7hk1s2y"; depends=[Biobase MASS]; }; - PSMatch = derive2 { name="PSMatch"; version="1.6.0"; sha256="0l13zbi011a793wlp9rfhgrixp7szj0zbn24yjw764527x66qxyj"; depends=[BiocGenerics BiocParallel igraph Matrix MsCoreUtils ProtGenerics QFeatures S4Vectors]; }; - PWMEnrich = derive2 { name="PWMEnrich"; version="4.38.0"; sha256="1s0hvqsvsfvhhyli238z8zbwnwmsi97gm3n83wv326zhzacmdxhf"; depends=[BiocGenerics Biostrings evd gdata S4Vectors seqLogo]; }; - PanViz = derive2 { name="PanViz"; version="1.4.0"; sha256="19aj5d9dhhzyylr2rlxq52ss82h5rvkc816661j45qcrcbm62ld0"; depends=[colorspace data_table dplyr easycsv futile_logger igraph magrittr RColorBrewer rentrez rlang stringr tibble tidyr]; }; - PanomiR = derive2 { name="PanomiR"; version="1.6.0"; sha256="0xbmqm61gfqk25mq97bb5bsda329jpn89k7dnm4qqjb35plswg38"; depends=[clusterProfiler dplyr forcats GSEABase igraph limma metap org_Hs_eg_db preprocessCore RColorBrewer rlang tibble withr]; }; - Path2PPI = derive2 { name="Path2PPI"; version="1.32.0"; sha256="1pjm0p91ins34fnhwkay0jnjms5fjpfw990mz343vr8s6ab83m89"; depends=[igraph]; }; - PathNet = derive2 { name="PathNet"; version="1.42.0"; sha256="1ivyr2f19dqzis1l6r1d695i20ymwq4ldgszbkraxbj1vzk51fpw"; depends=[]; }; - PathoStat = derive2 { name="PathoStat"; version="1.28.0"; sha256="16c54dkfv81rmfx2yrd0mi9ppv1kbqgvv6fi8y52cjzdk7rgpaxk"; depends=[ape BiocStyle ComplexHeatmap corpcor DESeq2 devtools dplyr DT edgeR ggplot2 glmnet gmodels knitr limma matrixStats phyloseq plotly plyr RColorBrewer rentrez reshape2 ROCR scales shiny shinyjs tidyr vegan webshot XML]; }; - PeacoQC = derive2 { name="PeacoQC"; version="1.12.0"; sha256="1108ni9lypy2p5xpv0zd68vaxnjz7sdpdi4vhpa1df1jwn91g6qw"; depends=[circlize ComplexHeatmap flowCore flowWorkspace ggplot2 gridExtra plyr]; }; - PepsNMR = derive2 { name="PepsNMR"; version="1.20.0"; sha256="013jw9l7r87j4bmpjrvq5qn91kp44wj5vd68cl5axbqhjg7fq4ww"; depends=[ggplot2 gridExtra Matrix matrixStats ptw reshape2]; }; - PhIPData = derive2 { name="PhIPData"; version="1.10.0"; sha256="14m8qbv6aspgj8ba78g91cgrfv44v8cq1xn6993qzkwdp94hxhwg"; depends=[BiocFileCache BiocGenerics cli edgeR GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; - PharmacoGx = derive2 { name="PharmacoGx"; version="3.6.0"; sha256="1nhv8rncjmbg21pc14n8crjknwdjf53yfmj4sk970qp6pryqs75p"; depends=[Biobase BiocGenerics BiocParallel boot caTools checkmate coop CoreGx data_table downloader ggplot2 jsonlite magicaxis MultiAssayExperiment RColorBrewer Rcpp reshape2 S4Vectors SummarizedExperiment]; }; - PhenStat = derive2 { name="PhenStat"; version="2.38.0"; sha256="16gh4qmp1r7hbfvnk38fzk0pg1xp9hnxixaa084c1pra5m9zrm7w"; depends=[car corrplot ggplot2 graph knitr lme4 logistf MASS msgps nlme nortest pingr reshape SmoothWin]; }; - PhenoGeneRanker = derive2 { name="PhenoGeneRanker"; version="1.10.0"; sha256="1912cbyr3qwyn4mbr1zarzh1rr9n4birfdx8fq8swhc9pjdrbydv"; depends=[doParallel dplyr foreach igraph Matrix]; }; - PhosR = derive2 { name="PhosR"; version="1.12.0"; sha256="1wjnc0i062kwdzz2hxavxifgfl47pk98s57z7av974vz9aa64v7b"; depends=[BiocGenerics circlize dendextend dplyr e1071 GGally ggdendro ggplot2 ggpubr ggtext igraph limma network pcaMethods pheatmap preprocessCore RColorBrewer reshape2 rlang ruv S4Vectors stringi SummarizedExperiment tidyr]; }; - PhyloProfile = derive2 { name="PhyloProfile"; version="1.16.3"; sha256="07wyacs8gyf7pdj41cwx3nvifmmxhlq1vsps2qw0f2xa8zi0iwnr"; depends=[ape BiocStyle bioDist Biostrings colourpicker data_table DT energy ExperimentHub ggplot2 gridExtra OmaDB pbapply plyr RColorBrewer RCurl shiny shinyBS shinycssloaders shinyFiles shinyjs stringr xml2 yaml zoo]; }; - Pi = derive2 { name="Pi"; version="2.14.0"; sha256="16jh7p3f6nk2hwvp44b9sas1dl618m520xj553x9dkaj77jmzp6d"; depends=[BiocGenerics caret dplyr GenomeInfoDb GenomicRanges ggnetwork ggplot2 ggrepel glmnet igraph IRanges lattice MASS Matrix osfr plot3D purrr randomForest RCircos readr ROCR scales supraHex tibble tidyr]; }; - Pigengene = derive2 { name="Pigengene"; version="1.28.0"; sha256="0sh9q6qx4ycgdhpdvh026hqcxyy6jnbz5inb5r2acj5n5sza0xbk"; depends=[BiocStyle bnlearn C50 clusterProfiler DBI DOSE dplyr gdata ggplot2 GO_db graph impute MASS matrixStats openxlsx partykit pheatmap preprocessCore ReactomePA Rgraphviz WGCNA]; }; - PloGO2 = derive2 { name="PloGO2"; version="1.14.0"; sha256="0r0zf8dfb4pv4hv5fp5v61i3q5bnzwxws1v3cnx7l64b0hjl2ffi"; depends=[GO_db GOstats httr lattice openxlsx xtable]; }; - PoDCall = derive2 { name="PoDCall"; version="1.10.1"; sha256="095nb16h3zbh35shv8skkndiav4qsg17fa8381ca4mmhc6jdsqzd"; depends=[diptest DT ggplot2 gridExtra LaplacesDemon mclust purrr readr rlist shiny shinyjs]; }; - PrInCE = derive2 { name="PrInCE"; version="1.18.0"; sha256="0qzsrmn3dww1yklf4d1pk9grbiij5fqpsnhxz2fqkb3r0xyrnqm6"; depends=[Biobase dplyr forecast Hmisc LiblineaR magrittr MSnbase naivebayes progress purrr ranger Rdpack robustbase speedglm tester tidyr]; }; - Prostar = derive2 { name="Prostar"; version="1.34.6"; sha256="12k5mgm052r6447w5jgz9ml4fd7x85q7r6jpzi2cj5msnv7nl7i4"; depends=[colourpicker DAPAR DAPARdata data_table DT future ggplot2 gplots gtools highcharter htmlwidgets knitr later markdown promises R_utils rclipboard RColorBrewer rhandsontable sass shiny shinyAce shinyBS shinycssloaders shinyjqui shinyjs shinythemes shinyTree shinyWidgets tibble vioplot webshot XML]; }; - ProtGenerics = derive2 { name="ProtGenerics"; version="1.34.0"; sha256="1gjva76nxa9nzzmc9hya3bq7hswfmjd768v21f6m3gyygxvl581m"; depends=[]; }; - ProteoDisco = derive2 { name="ProteoDisco"; version="1.8.0"; sha256="02d477mk43ci9vl1g1rp8zjw6635772pkyjnda87ms4as9jrxcw6"; depends=[BiocGenerics BiocParallel Biostrings checkmate cleaver dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges ParallelLogger plyr rlang S4Vectors tibble tidyr VariantAnnotation XVector]; }; - ProteoMM = derive2 { name="ProteoMM"; version="1.20.0"; sha256="0fgypbamsk8sh63s1nfda40f962ff5mi2qh0b8gaq20z6pkywk04"; depends=[biomaRt gdata ggplot2 ggrepel gtools matrixStats]; }; - PureCN = derive2 { name="PureCN"; version="2.8.1"; sha256="0hi1f1j2xlvlngf6pz28b6l9rcb1kkvlx5hg2zrlb8wd1gijxb7j"; depends=[Biobase BiocGenerics Biostrings data_table DNAcopy futile_logger GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra IRanges Matrix mclust RColorBrewer rhdf5 Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation VGAM]; }; - Pviz = derive2 { name="Pviz"; version="1.36.0"; sha256="17aggsyc82mpya27771sal2k03hvqmi4yxf8cqnknmakf9ylm9la"; depends=[Biostrings biovizBase data_table GenomicRanges Gviz IRanges]; }; - QDNAseq = derive2 { name="QDNAseq"; version="1.38.0"; sha256="1n2qngqqw3hfv1yscksnpg8wslc85dlvaqw1hz2qvsxf1gcq2mks"; depends=[Biobase CGHbase CGHcall DNAcopy future_apply GenomicRanges IRanges matrixStats R_utils Rsamtools]; }; - QFeatures = derive2 { name="QFeatures"; version="1.12.0"; sha256="1g744fpb6g690bjbjs4v2899wwv6qc7n5cyq977pm8f3wln0m7mx"; depends=[AnnotationFilter Biobase BiocGenerics igraph IRanges lazyeval MsCoreUtils MultiAssayExperiment plotly ProtGenerics S4Vectors SummarizedExperiment]; }; - QSutils = derive2 { name="QSutils"; version="1.20.0"; sha256="1313mja7ikn7j1bn1rai4xm5wfiv11b2xp5xcnk9rpqcy0nb2r6r"; depends=[ape BiocGenerics Biostrings psych]; }; - QTLExperiment = derive2 { name="QTLExperiment"; version="1.0.0"; sha256="0x6ciqw7hk94yvnf3qdnlg9zbc7s71b4gx22il8s6zv33js6y8cx"; depends=[ashr BiocGenerics checkmate collapse dplyr rlang S4Vectors SummarizedExperiment tibble tidyr vroom]; }; - QUBIC = derive2 { name="QUBIC"; version="1.30.0"; sha256="12iyng6x692a9iqy5rzbm9zgjz4nnw2839z6f8l5cys1rch4xvpv"; depends=[biclust Matrix Rcpp RcppArmadillo]; }; - Qtlizer = derive2 { name="Qtlizer"; version="1.16.0"; sha256="0gcvapgig22nxc0hsc516cdpjpykz0v7xgxb6y6g6ibqi1vyd5gl"; depends=[curl GenomicRanges httr stringi]; }; - QuartPAC = derive2 { name="QuartPAC"; version="1.34.0"; sha256="08af130jngr2080khlxan245y9m4573qnc1mvcnk76q9wppq5y64"; depends=[data_table GraphPAC iPAC SpacePAC]; }; - QuasR = derive2 { name="QuasR"; version="1.42.1"; sha256="0695pjvp742qn629kxly4a9crbg6vakdx1ygnyshprjsz6xz2vnn"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicFiles GenomicRanges IRanges Rbowtie Rhtslib Rsamtools rtracklayer S4Vectors ShortRead]; }; - QuaternaryProd = derive2 { name="QuaternaryProd"; version="1.36.0"; sha256="01xpfpa0pwi9fc4lp0yqw21j8mrmbwwfanxp48qlmplv9x86b36h"; depends=[dplyr Rcpp yaml]; }; - R3CPET = derive2 { name="R3CPET"; version="1.34.1"; sha256="0b0rv6s66ysfwsd7bx6fhq4jb0wp4dsvq5qv1qai54i26via6qa8"; depends=[BiocGenerics clValid data_table GenomeInfoDb GenomicRanges ggbio ggplot2 Hmisc igraph IRanges pheatmap Rcpp RCurl reshape2 S4Vectors]; }; - R453Plus1Toolbox = derive2 { name="R453Plus1Toolbox"; version="1.52.0"; sha256="0n72123n0gvhr36k6lcafa8mpr73i06jlz37599b0p6gdlj1r0gd"; depends=[Biobase BiocGenerics biomaRt Biostrings BSgenome GenomicRanges IRanges R2HTML Rsamtools S4Vectors ShortRead SummarizedExperiment TeachingDemos VariantAnnotation xtable XVector]; }; - R4RNA = derive2 { name="R4RNA"; version="1.30.0"; sha256="1qmr1s7z2f126wkwxjpr9fvak4i7mzgvfflkycgavbdqshn1rk6l"; depends=[Biostrings]; }; - RAIDS = derive2 { name="RAIDS"; version="1.0.0"; sha256="16apik3ykk1n1l4c15wh3f1r30w712vl8j7cpg7bnc29yy8yn202"; depends=[AnnotationDbi AnnotationFilter BSgenome class ensembldb gdsfmt GENESIS GenomicRanges IRanges MatrixGenerics pROC rlang S4Vectors SNPRelate VariantAnnotation]; }; - RAREsim = derive2 { name="RAREsim"; version="1.6.0"; sha256="0gr1vvqkdza317lrjr0m8316m2a7dirdhvl8xdqfl60vpwisiclg"; depends=[nloptr]; }; - RBGL = derive2 { name="RBGL"; version="1.78.0"; sha256="0hxhl1l6qdi355w5y7fdq8vlba2pknfizggkgr2fp8f1f3zqh494"; depends=[BH graph]; }; - RBM = derive2 { name="RBM"; version="1.34.0"; sha256="0ykwlcfymkv4pvjvkbih0926xrfzwvyijqi3gq6myk4aixhqxh4b"; depends=[limma marray]; }; - RBioFormats = derive2 { name="RBioFormats"; version="1.2.0"; sha256="0ny3mkc9cnyqqf3cxibzrncyzqd3ws5f7hd8kck0ag0fabqyp1pm"; depends=[EBImage rJava S4Vectors]; }; - RBioinf = derive2 { name="RBioinf"; version="1.62.0"; sha256="1ibnbzww5alix1sl2r1bbsgz7zgi5q6xcxnvfl6lf3kbicwvs82y"; depends=[graph]; }; - RCAS = derive2 { name="RCAS"; version="1.28.3"; sha256="1d9icr17xwdmgm6b8ihrwxsg1fp342c2p9f8yqdjm2y52z88gmpd"; depends=[BiocGenerics Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 cowplot data_table DT genomation GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gprofiler2 IRanges knitr pbapply pheatmap plotly plotrix proxy ranger rmarkdown RSQLite rtracklayer S4Vectors seqLogo]; }; - RCASPAR = derive2 { name="RCASPAR"; version="1.48.0"; sha256="00p11iac87ldd1hhkvl4sfpxznycp381w5m88xc20r3na7jgz9h7"; depends=[]; }; - RCM = derive2 { name="RCM"; version="1.18.0"; sha256="1yg6iqpfv56ysk8xz1ddi222qmmly02h6s09bbk4w4qygg5glyrv"; depends=[alabama DBI edgeR ggplot2 MASS nleqslv phyloseq RColorBrewer reshape2 tensor tseries VGAM]; }; - RCX = derive2 { name="RCX"; version="1.6.0"; sha256="0dq0hrlb4c049ggan3rsh15q3864aak4ndgg84i0sh12kpa4hdmy"; depends=[igraph jsonlite plyr]; }; - RCy3 = derive2 { name="RCy3"; version="2.22.1"; sha256="0qkjprf2p641j3a60av1l87pd6p17za5w6bp9qyah97jmm19za7m"; depends=[base64enc base64url BiocGenerics fs glue gplots graph httr IRdisplay IRkernel RColorBrewer RCurl RJSONIO stringi uuid XML]; }; - RCyjs = derive2 { name="RCyjs"; version="2.24.0"; sha256="0d5v1ngz0mgs2r35jm46wn24rpy7cd21d0ycvahp5zdl4kvrrb7i"; depends=[base64enc BiocGenerics BrowserViz graph httpuv]; }; - RDRToolbox = derive2 { name="RDRToolbox"; version="1.52.0"; sha256="1k1a0h18i5c3brvs9ibj16llxflrs0y72yjnnc5z9x4xc267m4y9"; depends=[MASS rgl]; }; - REBET = derive2 { name="REBET"; version="1.20.0"; sha256="038b5i9rlp96klwmym5s089ghd47r6rn7k5vjznlvsyqz93x5pxv"; depends=[ASSET]; }; - REDseq = derive2 { name="REDseq"; version="1.48.0"; sha256="1nb4c9mpp8wwnfvxqda07qfjdhzwapdqbn2ksi4v3fll4vp1gvp9"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome BSgenome_Celegans_UCSC_ce2 ChIPpeakAnno IRanges multtest]; }; - REMP = derive2 { name="REMP"; version="1.26.0"; sha256="196yxbdi0pkckpj7plz43r6zaasy9ndqbwc9mfwd6k4aps1c0r4i"; depends=[AnnotationHub BiocGenerics BiocParallel Biostrings BSgenome caret doParallel foreach GenomeInfoDb GenomicRanges impute IRanges iterators kernlab minfi org_Hs_eg_db ranger readr rtracklayer S4Vectors settings SummarizedExperiment]; }; - RESOLVE = derive2 { name="RESOLVE"; version="1.4.0"; sha256="1mzkdaqpzfmcxmz5hc6r2qd0hrp4j2vbv90is7nd5x8s2z8adq9z"; depends=[Biostrings BSgenome BSgenome_Hsapiens_1000genomes_hs37d5 data_table GenomeInfoDb GenomicRanges ggplot2 glmnet gridExtra IRanges lsa MutationalPatterns nnls reshape2 S4Vectors]; }; - RGMQL = derive2 { name="RGMQL"; version="1.22.1"; sha256="1ynk4wg91w8278bzwap65qv3f1myn0wzgirk8kay5f389wma8127"; depends=[BiocGenerics data_table dplyr GenomicRanges glue httr plyr RGMQLlib rJava rtracklayer S4Vectors xml2]; }; - RGSEA = derive2 { name="RGSEA"; version="1.36.0"; sha256="1llzp1d4g4d2ifjbhc4akdihnbj80zck23r9qwzaa5i5wky1b09b"; depends=[BiocGenerics]; }; - RGraph2js = derive2 { name="RGraph2js"; version="1.30.0"; sha256="0c0dfrfphsbx3pqa7knm35m9v4sqm12bgh8608p7y1fmhrfiz3cc"; depends=[digest graph rjson whisker]; }; - RITAN = derive2 { name="RITAN"; version="1.26.0"; sha256="05bfl9794h2mrm3d1a1d7bspl6dx2hhgjkip6x0fw1z1kv1mkpr2"; depends=[AnnotationFilter BgeeDB dynamicTreeCut EnsDb_Hsapiens_v86 ensembldb GenomicFeatures ggplot2 gplots gridExtra gsubfn hash igraph knitr linkcomm MCL plotrix png RColorBrewer reshape2 RITANdata sqldf STRINGdb]; }; - RIVER = derive2 { name="RIVER"; version="1.26.0"; sha256="1kczfywccgfa4xkqspr1995g5s4aajbbbjfvzvcssnwdxb8vv9g8"; depends=[Biobase ggplot2 glmnet pROC]; }; - RImmPort = derive2 { name="RImmPort"; version="1.30.0"; sha256="0wxx5x1za1rcvx5344ns4938bc89ccd22zbdszh7nxpy07h8142h"; depends=[data_table DBI dplyr plyr reshape2 RSQLite sqldf]; }; - RJMCMCNucleosomes = derive2 { name="RJMCMCNucleosomes"; version="1.26.0"; sha256="009sqq0wq84f5gdpcwbzjajlnhfi03q5qidvyhv2mx3i20c1k81a"; depends=[BiocGenerics BiocParallel consensusSeekeR GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; - RLMM = derive2 { name="RLMM"; version="1.64.0"; sha256="0mwk6nxclqhgg13lnyjdlk8c07kkp4b4fnifb0az0q5jw8hzwxg0"; depends=[MASS]; }; - RLSeq = derive2 { name="RLSeq"; version="1.5.2"; sha256="0nhip321gbv6phwdwi3qkbmhnfh7fhb9md6xs4lklskwkkrd7s1q"; depends=[AnnotationHub aws_s3 callr caretEnsemble circlize ComplexHeatmap dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggplotify ggprism pheatmap RColorBrewer regioneR rtracklayer valr VennDiagram]; }; - RLassoCox = derive2 { name="RLassoCox"; version="1.10.0"; sha256="0gj923b103bavhg0r1lmlxc23884gpliywq2d5bjv3bfikvbyd4h"; depends=[glmnet igraph Matrix survival]; }; - RMassBank = derive2 { name="RMassBank"; version="3.12.0"; sha256="0zf9945vzpla0qrq602v80wwz9m6rqs5fif55w5s8diphd7rqv57"; depends=[assertthat Biobase ChemmineOB ChemmineR data_table digest enviPat glue httr logger MSnbase mzR R_utils rcdk Rcpp readJDX rjson S4Vectors webchem XML yaml]; }; - RNAAgeCalc = derive2 { name="RNAAgeCalc"; version="1.14.0"; sha256="1cr84fxyc0sgc1d3wh8damq41jhmfb6khx9wj0khfqhwyffj1jkj"; depends=[AnnotationDbi ggplot2 impute org_Hs_eg_db recount SummarizedExperiment]; }; - RNASeqPower = derive2 { name="RNASeqPower"; version="1.42.0"; sha256="09hixgpg32fggw1v7x4msgyvpb3ygrnk3cqnx9hm32556vgg9a94"; depends=[]; }; - RNAdecay = derive2 { name="RNAdecay"; version="1.22.2"; sha256="1nzbq211mj0v66ddw16gh4vcbxar4bh094gf2hl8rqkyn1ck1vn7"; depends=[ggplot2 gplots nloptr scales TMB]; }; - RNAinteract = derive2 { name="RNAinteract"; version="1.50.0"; sha256="0xndds71xbx6slvsr9i1jpm8zlm5ljasimgp1dlvgyvc9bdsmnbl"; depends=[abind Biobase cellHTS2 geneplotter gplots hwriter ICS ICSNP lattice latticeExtra limma locfit RColorBrewer splots]; }; - RNAmodR = derive2 { name="RNAmodR"; version="1.16.0"; sha256="0mdk2cg63dxlpcx2q93h0p9j78mz39q0hx7n53272wxgmw6a4bpp"; depends=[BiocGenerics BiocParallel Biostrings BSgenome colorRamps GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz IRanges matrixStats Modstrings RColorBrewer reshape2 ROCR Rsamtools rtracklayer S4Vectors]; }; - RNAmodR_AlkAnilineSeq = derive2 { name="RNAmodR.AlkAnilineSeq"; version="1.16.0"; sha256="1q6g08m7lwbjlr6f2ws3j83hf43w8bknigz6qf6454l6fqlsdddm"; depends=[BiocGenerics GenomicRanges Gviz IRanges RNAmodR S4Vectors]; }; - RNAmodR_ML = derive2 { name="RNAmodR.ML"; version="1.16.0"; sha256="0vd18yz8lpmxv26gzf7ldkciwf5c2m0dslbbi1i0c255h5sgw0dr"; depends=[BiocGenerics GenomicRanges IRanges ranger RNAmodR S4Vectors]; }; - RNAmodR_RiboMethSeq = derive2 { name="RNAmodR.RiboMethSeq"; version="1.16.0"; sha256="0r6bkp993x9i0j59xavxlwgf28kh5ww8cs391c4wnxqg57k0m9g3"; depends=[BiocGenerics GenomicRanges Gviz IRanges RNAmodR S4Vectors]; }; - RNAsense = derive2 { name="RNAsense"; version="1.16.0"; sha256="1axxanhr17w33b8qdrmc1c4qysq4c37g1aafihamls5894v9m3n8"; depends=[ggplot2 NBPSeq qvalue SummarizedExperiment]; }; - RNAseqCovarImpute = derive2 { name="RNAseqCovarImpute"; version="1.0.2"; sha256="0pnn219r5rl726nrh9axa82sv4867imk5j065xxx5samc6gbwqzi"; depends=[Biobase BiocParallel dplyr edgeR foreach limma magrittr mice rlang]; }; - ROC = derive2 { name="ROC"; version="1.78.0"; sha256="12msc6skvcx4ajk20l71k32rj8lsiafjxwcsrd51kyy5x2yj2v4m"; depends=[knitr]; }; - ROCpAI = derive2 { name="ROCpAI"; version="1.14.0"; sha256="0lwm4iijkiqg6zqyzc8fbczmln3sb30s09j2762xbhz3fjqa4daz"; depends=[boot fission knitr SummarizedExperiment]; }; - ROSeq = derive2 { name="ROSeq"; version="1.14.0"; sha256="14qj8c2pw4i9n0hqj0lxnb85pwlmgn0a8jws8zpafk5ij93hy76y"; depends=[edgeR limma pbmcapply]; }; - ROTS = derive2 { name="ROTS"; version="1.30.0"; sha256="1zd5w3mq0vjs3ivdb23x6d28sqq0dsfv13d64k1yijr4vdk3wvp6"; depends=[Biobase Rcpp]; }; - ROntoTools = derive2 { name="ROntoTools"; version="2.30.0"; sha256="1p7vhl29gjkrf3ivh82c46i1kyy5hryd72vv4ar0x4b2vhwk40xi"; depends=[boot graph KEGGgraph KEGGREST Rgraphviz]; }; - RPA = derive2 { name="RPA"; version="1.58.0"; sha256="0l2jrc17w4dbkknfn5rnkcym66ijb504w439isp1h6k0s600i2yl"; depends=[affy BiocGenerics BiocStyle phyloseq rmarkdown]; }; - RProtoBufLib = derive2 { name="RProtoBufLib"; version="2.14.1"; sha256="015yaci2wimax2p772mndmy76qsj307rk4y71r5s8jcb0nwr0qg2"; depends=[]; }; - RRHO = derive2 { name="RRHO"; version="1.42.0"; sha256="0933g6z7lj2gd8jn1s6i95szhlq18bk7gnygaxfbryj4746bc4l4"; depends=[VennDiagram]; }; - RSVSim = derive2 { name="RSVSim"; version="1.42.0"; sha256="0zrikys3d3h2sshy94fkisq6ry1ig3limir27nrykrrx1gvlvs6l"; depends=[Biostrings GenomicRanges IRanges ShortRead]; }; - RSeqAn = derive2 { name="RSeqAn"; version="1.22.0"; sha256="0ww8j6x037d8nffixb8yjrma62v1al2bmy9l5ipb4schy4263zr4"; depends=[Rcpp]; }; - RTCA = derive2 { name="RTCA"; version="1.54.0"; sha256="1ibg8vln7mrgbvx1zqgvdljyamzxpzj8a0yls3b3shnwj86h333z"; depends=[Biobase gtools RColorBrewer]; }; - RTCGA = derive2 { name="RTCGA"; version="1.32.0"; sha256="1lzdwkisvzj1wyx3wx4ll1c2j9ww3xz8kpbngmpf8cdrw4h3jrg1"; depends=[assertthat data_table dplyr ggplot2 ggthemes htmltools knitr purrr RCurl rmarkdown rvest scales stringi survival survminer viridis XML xml2]; }; - RTCGAToolbox = derive2 { name="RTCGAToolbox"; version="2.32.1"; sha256="1a38b30nsg2bnlnijf4aa4rn4db2y4v86awfbf6a6qzqwlzknrcq"; depends=[BiocGenerics data_table DelayedArray GenomeInfoDb GenomicRanges httr RaggedExperiment RCurl RJSONIO rvest S4Vectors stringr SummarizedExperiment TCGAutils]; }; - RTN = derive2 { name="RTN"; version="2.26.0"; sha256="1mlhbhvrbm4ac77vilw33i0xsc98wzx9dik8dg2yk4jakljqc0y5"; depends=[car data_table igraph IRanges limma minet mixtools pheatmap pwr RedeR S4Vectors snow SummarizedExperiment viper]; }; - RTNduals = derive2 { name="RTNduals"; version="1.26.0"; sha256="0ai85037l94m41lbr53p8lck5sn2ijsxwnjh2ana4ydnhgl18j8i"; depends=[RTN]; }; - RTNsurvival = derive2 { name="RTNsurvival"; version="1.26.0"; sha256="1v0hw8kk34f5kk5aysd2qsxmaxalipbq505my65ycif6ymy846kd"; depends=[data_table dunn_test egg ggplot2 pheatmap RColorBrewer RTN RTNduals scales survival]; }; - RTopper = derive2 { name="RTopper"; version="1.48.0"; sha256="0jjrxckza2qd66995hjd0k626s8hf6p8g0hp5vjimbb9ciy3bax6"; depends=[Biobase limma multtest]; }; - RUVSeq = derive2 { name="RUVSeq"; version="1.36.0"; sha256="04byggwsvmqrl77268smbas0wax460cdshmp4v5iqc5fghl7n0p2"; depends=[Biobase EDASeq edgeR MASS]; }; - RUVcorr = derive2 { name="RUVcorr"; version="1.34.0"; sha256="1mzysavs3bflj24qb03lg3kp54ka0kqmcb0r5fk6wz74bx19wl7q"; depends=[BiocParallel bladderbatch corrplot gridExtra lattice MASS psych reshape2 snowfall]; }; - RUVnormalize = derive2 { name="RUVnormalize"; version="1.36.0"; sha256="0amazkib807ny32s9gp7bj5yfqwg38j3ycr6f675a4dcm9ik64l9"; depends=[Biobase RUVnormalizeData]; }; - RVS = derive2 { name="RVS"; version="1.24.0"; sha256="0pgx000vigsjmxy37qbwnf7xwsc5l04r1rw8vk684f01f0rk4f55"; depends=[GENLIB gRain kinship2 snpStats]; }; - RadioGx = derive2 { name="RadioGx"; version="2.6.0"; sha256="0ykmvva5h1y7x9bxhqqfc18car9nasy06v1jjban7dlm95dl8nmk"; depends=[assertthat Biobase BiocGenerics BiocParallel caTools CoreGx data_table downloader magicaxis matrixStats RColorBrewer reshape2 S4Vectors scales SummarizedExperiment]; }; - RaggedExperiment = derive2 { name="RaggedExperiment"; version="1.26.0"; sha256="07wx2icvxgrds1w7cx9pn99z6rzk2ih938j8g1laxmgx9sya74v6"; depends=[BiocBaseUtils BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix MatrixGenerics S4Vectors SummarizedExperiment]; }; - RandomWalkRestartMH = derive2 { name="RandomWalkRestartMH"; version="1.22.0"; sha256="0mvh22p0dliwapdgbl5r93dpjdfnvnxdv5ig3y9gd2ndn32h1cyc"; depends=[igraph Matrix]; }; - RankProd = derive2 { name="RankProd"; version="3.28.0"; sha256="139q9aw4mbq1ld5z7hfs1nxcg5bw6igfcd4mx3acsndmanb47im4"; depends=[gmp Rmpfr]; }; - RareVariantVis = derive2 { name="RareVariantVis"; version="2.30.0"; sha256="0mz2c4dldl1z30s5hq4fazz7rpb4vyhknh9mfq89sr5d8z2akmjr"; depends=[BiocGenerics BSgenome BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores googleVis gtools IRanges phastCons100way_UCSC_hg19 S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; - Rarr = derive2 { name="Rarr"; version="1.2.0"; sha256="1ysc3p9i6igzf4bfdigrl5jpxmb52zqhvx6hh0ba22ld5p2r4xcr"; depends=[httr jsonlite paws_storage R_utils stringr]; }; - RbcBook1 = derive2 { name="RbcBook1"; version="1.70.0"; sha256="0xbz0qv232jq975fs3by1v5fmgm1phyadnd02bw1a45yk5n2sw0i"; depends=[Biobase graph rpart]; }; - Rbec = derive2 { name="Rbec"; version="1.10.0"; sha256="1hji3v0y5j6m1m13jz576hid5kh7v4msj3g17jn1f4cwr9mysr63"; depends=[dada2 doParallel foreach ggplot2 Rcpp readr]; }; - Rbowtie = derive2 { name="Rbowtie"; version="1.42.0"; sha256="1arwr8gisc5g9bwxlachf3lvxpd2767ahnwdf2p1lidwpfism8l8"; depends=[]; }; - Rbowtie2 = derive2 { name="Rbowtie2"; version="2.8.0"; sha256="0dx1psk6f27p1kiw4qwj1nf55gpqgisibzipvlnn5m9q3q8g70gv"; depends=[magrittr Rsamtools]; }; - Rbwa = derive2 { name="Rbwa"; version="1.6.0"; sha256="0wk77v53avp9lalg8j0sdxfsplxywsdsdpq1aapja2i4ffimnzkr"; depends=[]; }; - Rcollectl = derive2 { name="Rcollectl"; version="1.2.0"; sha256="1v551pb459da2845457ds49mmshpb9bljn1kp1k4k6p1ccf9pdqm"; depends=[ggplot2 lubridate processx]; }; - Rcpi = derive2 { name="Rcpi"; version="1.38.0"; sha256="1wnbw2vq8ydwjbfpwhv6wkfrmwh4h265bbh7m19qm59vxvv5n22s"; depends=[Biostrings doParallel foreach GOSemSim RCurl rjson rlang]; }; - Rcwl = derive2 { name="Rcwl"; version="1.18.0"; sha256="11vq3ymwi6aj2ci7z6nqy8b5hjfqgp42sgxx04nn1ipziq9n67va"; depends=[basilisk batchtools BiocParallel codetools DiagrammeR R_utils S4Vectors shiny yaml]; }; - RcwlPipelines = derive2 { name="RcwlPipelines"; version="1.18.1"; sha256="1nf985hmyr9a6k7p1k3qjl736v9md5p45w9cfikpln128flk7c35"; depends=[BiocFileCache git2r httr rappdirs Rcwl S4Vectors]; }; - Rdisop = derive2 { name="Rdisop"; version="1.62.0"; sha256="1jz063hsrrbrqqx8p5yknagw19hsw51arck591h95dckncxd0006"; depends=[Rcpp]; }; - ReQON = derive2 { name="ReQON"; version="1.48.0"; sha256="0w28b3ma8r8rshijdm5jj1z64v91my7hcvw18r9pdwjprh05bw0g"; depends=[rJava Rsamtools seqbias]; }; - ReUseData = derive2 { name="ReUseData"; version="1.2.2"; sha256="1yrdnjv005ffcq96hfl9a4j426fd8df9pqwmwkjv76xwcdp6l3h0"; depends=[basilisk BiocFileCache jsonlite Rcwl RcwlPipelines S4Vectors yaml]; }; - ReactomeContentService4R = derive2 { name="ReactomeContentService4R"; version="1.10.0"; sha256="0vcn24phqb2rgqvlqczwi042vxv82hl98wsa59r324gi00ipi7wh"; depends=[data_table doParallel foreach httr jsonlite magick]; }; - ReactomeGSA = derive2 { name="ReactomeGSA"; version="1.16.1"; sha256="0p73p60hh5kicxi2ad4yhs3ggw82ymhw5p1xhc4rk842qbcamags"; depends=[dplyr ggplot2 gplots httr jsonlite progress RColorBrewer tidyr]; }; - ReactomeGraph4R = derive2 { name="ReactomeGraph4R"; version="1.10.0"; sha256="0gjlsv72lx60w9kbq76vz2ll12r6h11xmzkiw5d48vj88a9g5svl"; depends=[data_table doParallel foreach getPass jsonlite magrittr neo4r purrr ReactomeContentService4R rlang]; }; - ReactomePA = derive2 { name="ReactomePA"; version="1.46.0"; sha256="0kflwlmyckyivr8xh7fsmpl7jfkq5kavwpkswmvdfqckbd0n9xsc"; depends=[AnnotationDbi DOSE enrichplot ggplot2 ggraph graphite gson igraph reactome_db]; }; - ReadqPCR = derive2 { name="ReadqPCR"; version="1.48.0"; sha256="19w6a5az79av860pdhr8zl5kn2la910pq83vk3f0m1pr8fsnnc93"; depends=[Biobase]; }; - RedeR = derive2 { name="RedeR"; version="2.6.1"; sha256="1px84wgs1li7cafgbr33b1hj7w31ijjcq1jaklcdvgp8cw45hvz7"; depends=[igraph]; }; - RedisParam = derive2 { name="RedisParam"; version="1.4.0"; sha256="0h902fs5lwjn3c85cl9hrq7ky67zlr3254m885dg9v8904zsgisy"; depends=[BiocParallel futile_logger redux withr]; }; - RegionalST = derive2 { name="RegionalST"; version="1.0.1"; sha256="18d4abfmv4yqvbnaqajakyxrmy2x639xx4hzp2i31gij0qm2p0wv"; depends=[assertthat BayesSpace colorspace dplyr fgsea ggplot2 gridExtra magrittr RColorBrewer S4Vectors scater Seurat shiny SingleCellExperiment SummarizedExperiment tibble TOAST]; }; - RepViz = derive2 { name="RepViz"; version="1.18.0"; sha256="1qdsvhxcgsjvafabxc0cc9jn7m8dp48ar4idvc2b0m1h03wmd2ww"; depends=[biomaRt GenomicRanges IRanges Rsamtools S4Vectors]; }; - Repitools = derive2 { name="Repitools"; version="1.48.0"; sha256="0pkj5pgrm76hmhfm1jjdszir8v3ilrdzf7n7ir22f3hs2g10zby0"; depends=[BiocGenerics Biostrings BSgenome cluster DNAcopy edgeR GenomeInfoDb GenomicAlignments GenomicRanges gplots gsmoothr IRanges MASS Ringo Rsamtools Rsolnp rtracklayer S4Vectors]; }; - ReportingTools = derive2 { name="ReportingTools"; version="2.42.3"; sha256="109vmrdsjdjnfrlcdyadzbwz9a50hqaahf7dawwxkbbh4mmdih78"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category DESeq2 edgeR ggbio ggplot2 GOstats GSEABase hwriter IRanges knitr lattice limma PFAM_db R_utils XML]; }; - ResidualMatrix = derive2 { name="ResidualMatrix"; version="1.12.0"; sha256="06py71xbygfwq55kawh2x340idrf5mmxmnsz5m6lph2ka086dc5v"; depends=[DelayedArray Matrix S4Vectors]; }; - Rfastp = derive2 { name="Rfastp"; version="1.12.0"; sha256="0pngcnm95dkxbhqdks96rka912wk0j3m64n4xzbp76x9zngcsq4q"; depends=[ggplot2 Rcpp reshape2 Rhtslib rjson zlibbioc]; }; - RgnTX = derive2 { name="RgnTX"; version="1.4.0"; sha256="0xh1j2dffg8qgjf8s042saavw6rz2mm2136krn7s8a5dndr77i1d"; depends=[GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges regioneR S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene]; }; - Rgraphviz = derive2 { name="Rgraphviz"; version="2.46.0"; sha256="03l6yr76inv4fivy10g0h2qafgywrcjnnhs694lwqz1y6r0gm1sy"; depends=[graph]; }; - Rhdf5lib = derive2 { name="Rhdf5lib"; version="1.24.2"; sha256="0b2g57dxvzmnq6dig4dz7cy8lpy3q7fih5q643i5xjcds2cj6lk5"; depends=[]; }; - Rhisat2 = derive2 { name="Rhisat2"; version="1.18.0"; sha256="1pxlpwqzbdii0b1swy9vcq905934yfmyqwfx2j3f7n5n4dgglc2q"; depends=[GenomicFeatures GenomicRanges SGSeq]; }; - Rhtslib = derive2 { name="Rhtslib"; version="2.4.1"; sha256="089b5amwxwac6wvdnndy9inc218919q9dz9x58i2cp7il18vjd0c"; depends=[zlibbioc]; }; - RiboCrypt = derive2 { name="RiboCrypt"; version="1.8.0"; sha256="198jsia292c5zxq22nc0favc3awvk9dp2ar6mcc7rvkvxny14cvg"; depends=[BiocGenerics BiocParallel Biostrings bslib data_table dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 htmlwidgets httr IRanges jsonlite knitr markdown NGLVieweR ORFik plotly RCurl rlang shiny shinycssloaders shinyhelper shinyjqui stringr]; }; - RiboDiPA = derive2 { name="RiboDiPA"; version="1.10.0"; sha256="006yq094gym1dcixccs7n9fjv3xhdqqsbwx1dpqfas5x7vz27i0g"; depends=[BiocFileCache BiocGenerics data_table DESeq2 doParallel elitism foreach GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges matrixStats qvalue Rcpp reldist Rsamtools S4Vectors]; }; - RiboProfiling = derive2 { name="RiboProfiling"; version="1.32.0"; sha256="1bd37ypxsj9p94p2851hhc9ind59b5pkg1lyalha1nfw5gf8iay3"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr reshape2 Rsamtools rtracklayer S4Vectors sqldf]; }; - Ringo = derive2 { name="Ringo"; version="1.66.0"; sha256="1ch0akd4k1i4401jwxll5awlq7g12pw7x0kidarn5zva08jgiixd"; depends=[Biobase BiocGenerics genefilter lattice limma Matrix RColorBrewer vsn]; }; - Risa = derive2 { name="Risa"; version="1.44.0"; sha256="140q4x4sl7mffpglwy7hx0z5la2rkq0p1j22k36a4h1073wcpc2q"; depends=[affy Biobase biocViews Rcpp xcms]; }; - Rmagpie = derive2 { name="Rmagpie"; version="1.58.0"; sha256="0z55j3b2cpb5g14yvpc40y1099rrslhrcmnkj7x4hv7jgi0bvrd2"; depends=[Biobase e1071 kernlab pamr]; }; - Rmmquant = derive2 { name="Rmmquant"; version="1.20.0"; sha256="18r3jbi2ylgzl6v42blffcz60alfvkyqprhbq05xrg1hn1w95hc4"; depends=[apeglm BiocStyle DESeq2 devtools GenomicRanges org_Mm_eg_db Rcpp S4Vectors SummarizedExperiment TBX20BamSubset TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - RnBeads = derive2 { name="RnBeads"; version="2.20.0"; sha256="15z7l4nmpy01xm19717l27nwf3rfsn6wjv211fn2y4ls40mz75qp"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr S4Vectors]; }; - RnaSeqSampleSize = derive2 { name="RnaSeqSampleSize"; version="2.12.0"; sha256="1c07wsq002zh44s85j429qfxwyy9f2fn599mdq46r1lq511c8z7q"; depends=[biomaRt dplyr edgeR ggplot2 ggpubr heatmap3 KEGGREST matlab Rcpp recount RnaSeqSampleSizeData SummarizedExperiment tidyr tidyselect]; }; - Rnits = derive2 { name="Rnits"; version="1.36.0"; sha256="095r211s7829gslb61sck92sh23w6ikiksaxakmdczs34l3s5jlp"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; }; - RolDE = derive2 { name="RolDE"; version="1.6.0"; sha256="0g6wjg3pacwlncsb9ws584hxqv40kadwcak1g1z1lnj57kq99dh8"; depends=[doParallel doRNG foreach matrixStats nlme qvalue rngtools ROTS SummarizedExperiment]; }; - Rqc = derive2 { name="Rqc"; version="1.36.0"; sha256="0hrhfgv0b9ycw2vmzkpmrv9m9jvvq1n6asnxnrgvzlz81xak84ic"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings biovizBase GenomicAlignments GenomicFiles ggplot2 IRanges knitr markdown plyr Rcpp reshape2 Rsamtools S4Vectors shiny ShortRead]; }; - Rsamtools = derive2 { name="Rsamtools"; version="2.18.0"; sha256="0bcapiwdzv7rqgs4hmw7hq290r3pz5vvhg4apxard0yybq83na1g"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges Rhtslib S4Vectors XVector zlibbioc]; }; - Rsubread = derive2 { name="Rsubread"; version="2.16.1"; sha256="0rgfl1kmgf2f0lpj2fzgjvdm5d7swp9wz86jl8q9mydw6z49nxz8"; depends=[Matrix]; }; - Rtpca = derive2 { name="Rtpca"; version="1.12.0"; sha256="14xs427ws2ak3bxf5rbxnnr74ckgswglwwxbqpwhyzbglbk683pc"; depends=[Biobase dplyr fdrtool ggplot2 pROC tibble tidyr]; }; - Rtreemix = derive2 { name="Rtreemix"; version="1.64.0"; sha256="0pfabbiam424gwxfv11xfx2c5yn70rw97jddlmwlaz9jlbv98zz5"; depends=[Biobase graph Hmisc]; }; - Rvisdiff = derive2 { name="Rvisdiff"; version="1.0.0"; sha256="1si4znpjqj2690fibhmdzwy3ln90xbx6ykvnq3xwn6v0mgnaz8kn"; depends=[edgeR]; }; - S4Arrays = derive2 { name="S4Arrays"; version="1.2.1"; sha256="1z6kcgjb5fzslr02vmsvchbilrhwpgh1ghk1zmlq0h0lyzncaapd"; depends=[abind BiocGenerics crayon IRanges Matrix S4Vectors]; }; - S4Vectors = derive2 { name="S4Vectors"; version="0.40.2"; sha256="10lryil0psfyal0006rbhj0dbxyn8f7mpp11h758zc217cxsdnac"; depends=[BiocGenerics]; }; - SAIGEgds = derive2 { name="SAIGEgds"; version="2.2.1"; sha256="0068rjyphkhna734m68lriqjcwafgzvpvw7mgv48j9aghjiycfxr"; depends=[gdsfmt Matrix Rcpp RcppArmadillo RcppParallel SeqArray]; }; - SANTA = derive2 { name="SANTA"; version="2.38.0"; sha256="0gm9i0pj3c9sir8pmh12b62ah6x1gvy1lrp9hc6hg9rkh4gpyr0y"; depends=[igraph Matrix]; }; - SARC = derive2 { name="SARC"; version="1.0.0"; sha256="043sxjf0ppy7q5r49pd57dychygzhff4g4m5bnbkz88wp7njq0sz"; depends=[data_table DescTools GenomicFeatures GenomicRanges ggplot2 gridExtra gtable IRanges metap multtest plotly plyranges RaggedExperiment RColorBrewer reshape2 scales tidyverse]; }; - SBGNview = derive2 { name="SBGNview"; version="1.16.0"; sha256="01adszv87yjg6gn8pp8b76i1xqvxrnnkfb7h4va450dcz1f3hzvs"; depends=[AnnotationDbi bookdown httr igraph KEGGREST knitr pathview Rdpack rmarkdown rsvg SBGNview_data SummarizedExperiment xml2]; }; - SBMLR = derive2 { name="SBMLR"; version="1.98.0"; sha256="1clhrzrgwfrljg3ssz20nw4jk9nyjswiqclad6hwxj5aidndig1a"; depends=[deSolve XML]; }; - SC3 = derive2 { name="SC3"; version="1.30.0"; sha256="055h6j3yxahgfa97c7p3jk6qvy66p20xv53xi06j9cszrqwjh06g"; depends=[BiocGenerics cluster doParallel doRNG e1071 foreach ggplot2 pheatmap Rcpp RcppArmadillo robustbase ROCR rrcov S4Vectors shiny SingleCellExperiment SummarizedExperiment WriteXLS]; }; - SCAN_UPC = derive2 { name="SCAN.UPC"; version="2.44.0"; sha256="0dcwrifpxkhsx4f72cgjwkwlakzzzsvnsm5kjnmh2n8py5d0b7iy"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; }; - SCANVIS = derive2 { name="SCANVIS"; version="1.16.0"; sha256="1y1lrkalcsl31rsyzdvjzj2zfpjki56jvphi758z8w49d920jn5y"; depends=[IRanges plotrix RCurl rtracklayer]; }; - SCArray = derive2 { name="SCArray"; version="1.10.0"; sha256="194zcw12jnsssizkw7hjgv1ja3gpnfc4kbhnh56j9apc6yr3q9ab"; depends=[BiocParallel BiocSingular DelayedArray DelayedMatrixStats gdsfmt Matrix S4Vectors SingleCellExperiment SummarizedExperiment]; }; - SCArray_sat = derive2 { name="SCArray.sat"; version="1.2.1"; sha256="0lk887vbvdaydw9nmdsajkhrrn16ab3h0zkymmc46g22p4yqfxbp"; depends=[BiocGenerics BiocParallel BiocSingular DelayedArray gdsfmt Matrix S4Vectors SCArray Seurat SeuratObject SummarizedExperiment]; }; - SCBN = derive2 { name="SCBN"; version="1.20.0"; sha256="1sxm0qmnz1cxxwdgskwrjf2iqz8fj7x1df2c88h53n05q8amxx48"; depends=[]; }; - SCFA = derive2 { name="SCFA"; version="1.12.0"; sha256="17bpmypgcx9wcrnalwc7sm0dzxg7w454riksxm34kjw2jdh1ql78"; depends=[BiocParallel cluster coro glmnet igraph Matrix matrixStats psych RhpcBLASctl survival torch]; }; - SCOPE = derive2 { name="SCOPE"; version="1.14.0"; sha256="1snr6f62cvz9jxrgqrhinc9nnp5fanmps99sn1ki8bwwglak0c2v"; depends=[BiocGenerics Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DescTools DNAcopy doParallel foreach GenomeInfoDb GenomicRanges gplots IRanges RColorBrewer Rsamtools S4Vectors]; }; - SCnorm = derive2 { name="SCnorm"; version="1.24.0"; sha256="1d1p0gd9n7r51vac8gaq9igpg508hi46fafp2nk3ffm35qw9v211"; depends=[BiocGenerics BiocParallel cluster data_table forcats ggplot2 moments quantreg S4Vectors SingleCellExperiment SummarizedExperiment]; }; - SDAMS = derive2 { name="SDAMS"; version="1.22.0"; sha256="0lmjirlly0rpy47vr4qkxdpabzfbffvsj7wfxln0dy4j5i70mj6y"; depends=[qvalue SummarizedExperiment trust]; }; - SELEX = derive2 { name="SELEX"; version="1.34.0"; sha256="0m4ah03s1ywxpc3rdxx5bd1a9zx54wxn5lacxvmw7sd52xgm9xnj"; depends=[Biostrings rJava]; }; - SEtools = derive2 { name="SEtools"; version="1.16.0"; sha256="01vrn6q2zm9nimhz194q8kvr4pc2szk0hhj2bkns7qji9h385sc4"; depends=[BiocParallel circlize data_table DESeq2 edgeR Matrix openxlsx pheatmap S4Vectors sechm SummarizedExperiment sva]; }; - SGCP = derive2 { name="SGCP"; version="1.2.0"; sha256="1cc0brhw77b73nircb3n2ghbihdjmk7l11s8nmkvljydx6b52sja"; depends=[annotate caret DescTools dplyr expm genefilter ggplot2 ggridges GO_db GOstats graph openxlsx org_Hs_eg_db plyr RColorBrewer reshape2 Rgraphviz RSpectra SummarizedExperiment xtable]; }; - SGSeq = derive2 { name="SGSeq"; version="1.36.0"; sha256="1h44r0frrw54s9nqa539ifg270ggmm634gj9cyhn4z7nhxxh134c"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer RUnit S4Vectors SummarizedExperiment]; }; - SIAMCAT = derive2 { name="SIAMCAT"; version="2.6.0"; sha256="09m0qjgd6rmqdqxb55g004azjvjm8abfylgrp3k7qlbql5b087bw"; depends=[beanplot corrplot glmnet gridBase gridExtra infotheo lgr LiblineaR lmerTest matrixStats mlr3 mlr3learners mlr3tuning paradox phyloseq pROC progress PRROC RColorBrewer scales stringr]; }; - SICtools = derive2 { name="SICtools"; version="1.32.0"; sha256="0bcajjvkaxmr8bdij8xln7a3nmxbm7jkjvg2v6p8kd0xr3q9a70q"; depends=[Biostrings doParallel GenomicRanges IRanges matrixStats plyr Rsamtools stringr]; }; - SIM = derive2 { name="SIM"; version="1.72.0"; sha256="0ygc7xb3ywp24b3qgsmigvb81p46rbgb2yglwig1fjzjw920fvfk"; depends=[globaltest quantreg quantsmooth]; }; - SIMAT = derive2 { name="SIMAT"; version="1.34.0"; sha256="1n96ydczx3frb01ww3qj5ad18dbxr8ak3bi44lgnb71lalw2489x"; depends=[ggplot2 mzR Rcpp reshape2]; }; - SIMD = derive2 { name="SIMD"; version="1.20.0"; sha256="0am1k5k2ma6nwc5ryil01fvmq8bchqkr4nn7yl5z2l5p5dnvwkwj"; depends=[edgeR methylMnM statmod]; }; - SIMLR = derive2 { name="SIMLR"; version="1.28.0"; sha256="1whg4z0m8j3f1vx473xdblkx8dzl3qmj9lnd52bvkxms9013mysy"; depends=[Matrix pracma Rcpp RcppAnnoy RSpectra]; }; - SLqPCR = derive2 { name="SLqPCR"; version="1.68.0"; sha256="1p6fi4i1xq7gkbci9ay9nn70fm5qm7r1xj3mfiksmjdsagz51jfp"; depends=[]; }; - SMAD = derive2 { name="SMAD"; version="1.18.0"; sha256="167hwqv02q9crzlby5kgdzqsyd6h2hwav35bvxh2wn4skg6mfyc7"; depends=[dplyr magrittr Rcpp RcppAlgos tidyr]; }; - SMAP = derive2 { name="SMAP"; version="1.66.0"; sha256="0m6jvb3jpnk36cv8grj1s3af6nm9xnn3x0mxkrwfbpgzvcn5735n"; depends=[]; }; - SMITE = derive2 { name="SMITE"; version="1.30.0"; sha256="0hz0wjfw43l1s3hdmwvpy3623ps8alhblc1lb06dnx0pa7r3gljd"; depends=[AnnotationDbi Biobase BioNet geneLenDataBase GenomicRanges ggplot2 goseq Hmisc igraph IRanges KEGGREST org_Hs_eg_db plyr reactome_db S4Vectors scales]; }; - SNAGEE = derive2 { name="SNAGEE"; version="1.42.0"; sha256="1mchl07vkdai2w9f65620say9p1gsqxbfcylawncixjir0nj7w8h"; depends=[SNAGEEdata]; }; - SNPRelate = derive2 { name="SNPRelate"; version="1.36.1"; sha256="0d15r7qwwrr6m9saikx4x6hj56kb3p2w3v1awkgm3wfqfgdf1pin"; depends=[gdsfmt]; }; - SNPediaR = derive2 { name="SNPediaR"; version="1.28.0"; sha256="1pibr18xxq4q1rrsz0cvnajkfp6gv6n5c8i12cj0s8b280yllkg1"; depends=[jsonlite RCurl]; }; - SNPhood = derive2 { name="SNPhood"; version="1.32.0"; sha256="0af73i20bj15v3s6zfmbmdcc2iy3mvqdkkkjs3c1hij3xl8l9vif"; depends=[BiocGenerics BiocParallel Biostrings checkmate cluster data_table DESeq2 GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges lattice RColorBrewer reshape2 Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; - SOMNiBUS = derive2 { name="SOMNiBUS"; version="1.10.0"; sha256="12ds311rk4ln2hahnyqwdxzvfkpcd4lhfhrv1qhn8rmjy5blnijg"; depends=[annotatr BiocManager bsseq data_table GenomeInfoDb GenomicRanges ggplot2 IRanges Matrix mgcv reshape2 rtracklayer S4Vectors tidyr VGAM yaml]; }; - SPEM = derive2 { name="SPEM"; version="1.42.0"; sha256="1iycjss3m3z0q0jfgzwa2jxzrnbskvsza2y852k18mmvzby4gsbs"; depends=[Biobase Rsolnp]; }; - SPIA = derive2 { name="SPIA"; version="2.54.0"; sha256="091plgvpsmv4x6h19awqkiqdkxjdn9jm5mh52y7m77qgybnjpsm5"; depends=[KEGGgraph]; }; - SPIAT = derive2 { name="SPIAT"; version="1.4.2"; sha256="1frzvyxyf2nvbzqwf73b9lq4jcfcl6ld2k471c13wj1vng476d7j"; depends=[apcluster dbscan dittoSeq dplyr ggplot2 gridExtra gtools mmand pracma RANN raster reshape2 rlang sp SpatialExperiment spatstat_explore spatstat_geom SummarizedExperiment tibble vroom]; }; - SPLINTER = derive2 { name="SPLINTER"; version="1.28.0"; sha256="1nlyq1ljbark29bkf5qc7p1r37ndicv2rb4zn9w33qzpl9rcc1zx"; depends=[biomaRt Biostrings BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 googleVis Gviz IRanges plyr S4Vectors seqLogo stringr]; }; - SPOTlight = derive2 { name="SPOTlight"; version="1.6.7"; sha256="1xksds1mv5y1jfpl36bjk0mwm1nsp5f6qc234nahj82dz4adrwaq"; depends=[ggplot2 Matrix matrixStats NMF nnls SingleCellExperiment sparseMatrixStats]; }; - SPsimSeq = derive2 { name="SPsimSeq"; version="1.12.0"; sha256="0cfh6hdzxylm7y1clza0blcx5pq1l6cwrflw8mlfqaasiw46jiqn"; depends=[edgeR fitdistrplus Hmisc limma mvtnorm phyloseq SingleCellExperiment WGCNA]; }; - SQLDataFrame = derive2 { name="SQLDataFrame"; version="1.16.1"; sha256="0k9m440dnsbbzz2mxqhy54syimy8ryzx528nsbm65ppslk52p36l"; depends=[BiocGenerics DBI dbplyr dplyr lazyeval RSQLite S4Vectors tibble]; }; - SQUADD = derive2 { name="SQUADD"; version="1.52.0"; sha256="0vg7mhx2aldk53jdgy4k8yk3jyjwklmp13mxch7cxinr8bzbyjh6"; depends=[RColorBrewer]; }; - SRAdb = derive2 { name="SRAdb"; version="1.64.0"; sha256="1pvyakg4pj61m2nwk0pljvalimr5r4siwx76a6yszqlrgphmxbg5"; depends=[GEOquery graph RCurl RSQLite]; }; - STATegRa = derive2 { name="STATegRa"; version="1.38.0"; sha256="0p2h6bq6fzab2rs3sb6194nqjk0jav6asc6h8zmzpm2fk5ciq1dk"; depends=[affy Biobase calibrate edgeR foreach ggplot2 gplots gridExtra limma MASS]; }; - STRINGdb = derive2 { name="STRINGdb"; version="2.14.3"; sha256="06bckzczg2rspazcbpp3v265c1dkr9l1vpdhkc7gdn2dk960jlkh"; depends=[gplots hash httr igraph plotrix plyr png RColorBrewer sqldf]; }; - STdeconvolve = derive2 { name="STdeconvolve"; version="1.6.0"; sha256="16vw0y8ywsjspjmra94hl854ckdga6zfg5klpjp9w9vxsl75wb0p"; depends=[BiocParallel clue ggplot2 liger Matrix mgcv reshape2 scatterpie slam topicmodels viridis]; }; - SUITOR = derive2 { name="SUITOR"; version="1.4.0"; sha256="0aqh8sfkzwfws735k7b7r54cd3gq07fi1gvl2n377rx91qqkdy6w"; depends=[BiocParallel ggplot2]; }; - SVMDO = derive2 { name="SVMDO"; version="1.2.8"; sha256="1pp2d40i69xkjqk4cdga0ql26gf6j323h95c9idmikb2l2pjg3hj"; depends=[AnnotationDbi BSDA caret caTools data_table DOSE dplyr e1071 golem klaR nortest org_Hs_eg_db shiny shinyFiles shinytitle sjmisc SummarizedExperiment survival]; }; - SWATH2stats = derive2 { name="SWATH2stats"; version="1.32.1"; sha256="14ksg02cpp40pbk6qid4j94lcjzrqb4ry5rxr3914fr04y85jg3x"; depends=[biomaRt data_table ggplot2 reshape2]; }; - SamSPECTRAL = derive2 { name="SamSPECTRAL"; version="1.56.0"; sha256="1w3lddbqy52b34430kyal2h86xb34bi7l8f30pjgv0kjwd24i0a9"; depends=[]; }; - Scale4C = derive2 { name="Scale4C"; version="1.24.0"; sha256="0rjlyh0m1vk75316zhqcv4j4jjdqgwnkqym03qcqnqb06fzjxxkr"; depends=[GenomicRanges IRanges smoothie SummarizedExperiment]; }; - ScaledMatrix = derive2 { name="ScaledMatrix"; version="1.10.0"; sha256="1aigca0s8cmi46458pl9p9vwlkrmqawbgi0xmbwslz646x2s2h4a"; depends=[DelayedArray Matrix S4Vectors]; }; - Sconify = derive2 { name="Sconify"; version="1.22.0"; sha256="1pbgigqbvvaz5ywsmp4j83ivcmpzw4x2915pf12aafxmc28xzkky"; depends=[dplyr flowCore FNN ggplot2 magrittr readr Rtsne tibble]; }; - ScreenR = derive2 { name="ScreenR"; version="1.4.0"; sha256="122vzawz6bpaqnv9mxn56a9n3158v6yz3qb0z9h6fb99r59q7cm1"; depends=[dplyr edgeR ggplot2 ggvenn limma magrittr patchwork purrr rlang scales stringr tibble tidyr tidyselect]; }; - SemDist = derive2 { name="SemDist"; version="1.36.0"; sha256="160zf6913hrjgb8qnynm5nx21a1317sfsr57qjbz1sbd3pmcz1iz"; depends=[annotate AnnotationDbi GO_db]; }; - SeqArray = derive2 { name="SeqArray"; version="1.42.2"; sha256="1bwqyvvfwwscznwi1bm4wh2pqf0fmq68g7siwbbw5ypj087ibnnm"; depends=[Biostrings gdsfmt GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - SeqGSEA = derive2 { name="SeqGSEA"; version="1.42.0"; sha256="0gg6v2r78gskmpdcdc4km82mcyz2p8b2rmmdkh47bp0sa4pr4j61"; depends=[Biobase biomaRt DESeq2 doParallel]; }; - SeqGate = derive2 { name="SeqGate"; version="1.12.0"; sha256="0pkyvws1iq1gjs3qdqxsnhq4ywg3zy6qa121y3g6xyfqviq27hv3"; depends=[BiocManager GenomicRanges S4Vectors SummarizedExperiment]; }; - SeqSQC = derive2 { name="SeqSQC"; version="1.24.0"; sha256="0vjah085hr50pvkgm2sscpa97fvhsglcwvj5jb08v2liz1vzm3zb"; depends=[e1071 ExperimentHub gdsfmt GenomicRanges GGally ggplot2 IRanges RColorBrewer reshape2 rmarkdown S4Vectors SNPRelate]; }; - SeqVarTools = derive2 { name="SeqVarTools"; version="1.40.0"; sha256="19f2k5daysj81ghr9625yk6ls008x83dlxsi1qyl5w9fgl8zwc1b"; depends=[Biobase BiocGenerics data_table gdsfmt GenomicRanges GWASExactHW IRanges logistf Matrix S4Vectors SeqArray]; }; - SharedObject = derive2 { name="SharedObject"; version="1.16.0"; sha256="08gwk107j43qca3sgi20fiziq9xaf88z1j91d2xrzpgijbs01zbp"; depends=[BH BiocGenerics Rcpp]; }; - ShortRead = derive2 { name="ShortRead"; version="1.60.0"; sha256="0fgiszb5qhplppfngpi4s33sx62ff5sdhd6n31a3b6l7fnlvk51m"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra Rhtslib Rsamtools S4Vectors XVector zlibbioc]; }; - SiPSiC = derive2 { name="SiPSiC"; version="1.2.2"; sha256="0mdpspmnhp7rnm7k0zmgdfbdkqh3cnrsianxv1s0r1jlnqfhbhm7"; depends=[Matrix SingleCellExperiment]; }; - SigCheck = derive2 { name="SigCheck"; version="2.34.0"; sha256="1lnsdcq1j8ih1l4r0c1i21qgcafl3wsyancy6svj7crg1fxndarc"; depends=[Biobase BiocParallel e1071 MLInterfaces survival]; }; - SigFuge = derive2 { name="SigFuge"; version="1.40.0"; sha256="010ma9z6y1qxd8sm009vk1qb65p1n2vbwyz3agvzlj2xzjd0aamj"; depends=[GenomicRanges ggplot2 matlab reshape sigclust]; }; - SigsPack = derive2 { name="SigsPack"; version="1.16.0"; sha256="1sdjgc1c0xpx7xk6rp4l95dknr92b097rhk7q28893xglx1khizm"; depends=[Biobase Biostrings BSgenome GenomeInfoDb GenomicRanges quadprog rtracklayer SummarizedExperiment VariantAnnotation]; }; - SimBindProfiles = derive2 { name="SimBindProfiles"; version="1.40.0"; sha256="0adcyw4x7yw4v20bwx4fzrhqd7g1r9fhpr1nqqnwkg44b51rdm6z"; depends=[Biobase limma mclust Ringo]; }; - SimBu = derive2 { name="SimBu"; version="1.4.3"; sha256="1zlb8r441pz1sp9wj3ylz65xzry1jd4y6f97nl9qwyqvyxf0nb63"; depends=[basilisk BiocParallel data_table dplyr ggplot2 Matrix phyloseq proxyC RColorBrewer RCurl reticulate sparseMatrixStats SummarizedExperiment tidyr]; }; - SimFFPE = derive2 { name="SimFFPE"; version="1.14.0"; sha256="0qnj0lj08sqaihx83fvkszp0nqsyc3azfwiyzzdcp42np7k7w375"; depends=[Biostrings doParallel dplyr foreach GenomicRanges IRanges Rsamtools truncnorm]; }; - SingleCellExperiment = derive2 { name="SingleCellExperiment"; version="1.24.0"; sha256="0q44n97mly1ldh52r0sb1jwhz8bn4n7sfw99qs5h4s44w9s0fry4"; depends=[BiocGenerics DelayedArray GenomicRanges S4Vectors SummarizedExperiment]; }; - SingleCellSignalR = derive2 { name="SingleCellSignalR"; version="1.14.0"; sha256="0y8f761n0bkwd3smisxzhzpfd2lgzgxvg29j4xz7c604lx91zn0h"; depends=[BiocManager circlize data_table edgeR foreach gplots igraph limma multtest pheatmap Rtsne scran stringr]; }; - SingleMoleculeFootprinting = derive2 { name="SingleMoleculeFootprinting"; version="1.10.0"; sha256="15mhir2mlyq0qqadm6b1856z40dm1fmvzq8br07vqdmq5q7dzx95"; depends=[BiocGenerics Biostrings BSgenome data_table GenomeInfoDb GenomicRanges IRanges plyr QuasR RColorBrewer]; }; - SingleR = derive2 { name="SingleR"; version="2.4.1"; sha256="0zlv45diasff5ipxp99dddswclrzzdcmkqp278fm2cj7aibvb3sd"; depends=[beachmat BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats Matrix Rcpp S4Vectors SummarizedExperiment]; }; - SomaticSignatures = derive2 { name="SomaticSignatures"; version="2.38.0"; sha256="0s9kjjh1n4a55ycjvcw8ymjcclcj8b35aygx4x1k5af1hf3f7wyb"; depends=[Biobase Biostrings GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges NMF pcaMethods proxy reshape2 S4Vectors VariantAnnotation]; }; - SpacePAC = derive2 { name="SpacePAC"; version="1.40.0"; sha256="0b9gpv1jr09cd7q8n63jln13dh2gxp463wlxf4gjm628bxnd4ld2"; depends=[iPAC]; }; - Spaniel = derive2 { name="Spaniel"; version="1.16.0"; sha256="0chdzslsgy0vy14hbzwsgvx48gibldnpk8dax01znzpckn7cydza"; depends=[dplyr DropletUtils ggplot2 igraph jpeg jsonlite magrittr png S4Vectors scater scran Seurat shiny SingleCellExperiment SummarizedExperiment]; }; - SparseArray = derive2 { name="SparseArray"; version="1.2.4"; sha256="0gz1j8g020bp88i5idrhj9qrixgar3wvxxna46ds60q6d8lsn4vi"; depends=[BiocGenerics IRanges Matrix MatrixGenerics matrixStats S4Arrays S4Vectors XVector]; }; - SparseSignatures = derive2 { name="SparseSignatures"; version="2.12.0"; sha256="1mw13hhfh4810czvdyr7yfz1ydnjdyil4fx1xr1nq5p940pv6kq3"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges NMF nnlasso nnls reshape2]; }; - SpatialCPie = derive2 { name="SpatialCPie"; version="1.18.0"; sha256="10ypjra117w1n5344vjdn44rzwk8yf32y9lyig5i8nch386bli85"; depends=[colorspace data_table digest dplyr ggforce ggiraph ggplot2 ggrepel igraph lpSolve purrr readr rlang shiny shinycssloaders shinyjs shinyWidgets SummarizedExperiment tibble tidyr tidyselect zeallot]; }; - SpatialDecon = derive2 { name="SpatialDecon"; version="1.12.3"; sha256="0myaf95pq12x9kjzn695k122v921znslp65hpcxw8yjxvjjd02vn"; depends=[Biobase GeomxTools logNormReg Matrix repmis SeuratObject]; }; - SpatialExperiment = derive2 { name="SpatialExperiment"; version="1.12.0"; sha256="1s42jzq95f662h39zmbf06qmrrglbch8sgygpnwqblrjbrqgm7n4"; depends=[BiocFileCache BiocGenerics magick rjson S4Vectors SingleCellExperiment SummarizedExperiment]; }; - SpatialFeatureExperiment = derive2 { name="SpatialFeatureExperiment"; version="1.4.0"; sha256="1ys7rkamcqpcby95vrskqmm4xka84vvv79k1svxnjsl4plwpqzx6"; depends=[BiocGenerics BiocNeighbors BiocParallel Matrix rjson rlang S4Vectors sf SingleCellExperiment SpatialExperiment spdep SummarizedExperiment terra]; }; - SpatialOmicsOverlay = derive2 { name="SpatialOmicsOverlay"; version="1.2.1"; sha256="0smwr332zxxi6wp0xsxwj2bp42jn92n7wdbhdf3dmmcgwbgd3z37"; depends=[base64enc Biobase BiocFileCache data_table dplyr EBImage GeomxTools ggplot2 ggtext magick pbapply plotrix RBioFormats readxl S4Vectors scattermore stringr XML]; }; - SpeCond = derive2 { name="SpeCond"; version="1.56.0"; sha256="1g3qjqlxnkqjin8qyq2h5qrski6slc3bwbwqfrnlykhshmrj148q"; depends=[Biobase fields hwriter mclust RColorBrewer]; }; - Spectra = derive2 { name="Spectra"; version="1.12.0"; sha256="07zs9x5fzxzwicjc5x29sv33yidmq1ar70ss91py094zbw9i63qy"; depends=[BiocGenerics BiocParallel fs IRanges MetaboCoreUtils MsCoreUtils ProtGenerics S4Vectors]; }; - SpectralTAD = derive2 { name="SpectralTAD"; version="1.18.0"; sha256="0f22j4n3zzgd01snh254yhsa6z3qzaa2i8ylc9bc6jj9ifivn43q"; depends=[BiocParallel cluster dplyr GenomicRanges HiCcompare magrittr Matrix PRIMME]; }; - SpidermiR = derive2 { name="SpidermiR"; version="1.32.0"; sha256="07s421c8ashww8x99ac18fy1lvjl4zmm3jsz0fggw1gvii172c1x"; depends=[AnnotationDbi gdata httr igraph miRNAtap miRNAtap_db org_Hs_eg_db]; }; - SpliceWiz = derive2 { name="SpliceWiz"; version="1.4.1"; sha256="0hkly0wi7nqwsnqf0pqr48q3qpq1sjyzsfpbar7qzwhar9xmcr2p"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats DT fst genefilter GenomeInfoDb GenomicRanges ggplot2 HDF5Array heatmaply htmltools IRanges magrittr matrixStats NxtIRFdata ompBAM patchwork pheatmap plotly progress R_utils RColorBrewer Rcpp RcppProgress rhandsontable rhdf5 rtracklayer rvest S4Vectors scales shiny shinydashboard shinyFiles shinyWidgets stringi SummarizedExperiment zlibbioc]; }; - SplicingFactory = derive2 { name="SplicingFactory"; version="1.10.0"; sha256="0vk2cy7h9pypm6sk885y5i7gxj7dz8h690zd51la6ygjffnw4jwi"; depends=[SummarizedExperiment]; }; - SplicingGraphs = derive2 { name="SplicingGraphs"; version="1.42.0"; sha256="1nayd64paddq4qm0k6m6lhjdy7rbz16ma394a81j10l12h378p34"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph igraph IRanges Rgraphviz Rsamtools S4Vectors]; }; - SpotClean = derive2 { name="SpotClean"; version="1.4.1"; sha256="06na6hbzb9sf7gq86b9zb08hfy2pflxsgql1clwdn63b4bhrxc34"; depends=[dplyr ggplot2 Matrix RColorBrewer readbitmap rhdf5 rjson rlang S4Vectors Seurat SpatialExperiment SummarizedExperiment tibble viridis]; }; - StarBioTrek = derive2 { name="StarBioTrek"; version="1.28.0"; sha256="0cpgn0zcimg18yybfgrjzdczsinvx6n81jjm850gbi76ararq8sc"; depends=[AnnotationDbi e1071 ggplot2 graphite igraph MLmetrics reshape2 ROCR SpidermiR]; }; - Statial = derive2 { name="Statial"; version="1.4.5"; sha256="1hrjkncgd1vppbxc66vp1i5kliqpdp0m4w7wqc48zw8pnns4555q"; depends=[BiocParallel concaveman data_table dplyr ggplot2 limma magrittr plotly purrr ranger S4Vectors SingleCellExperiment SpatialExperiment spatstat_explore spatstat_geom stringr SummarizedExperiment tibble tidyr tidyselect]; }; - Streamer = derive2 { name="Streamer"; version="1.48.0"; sha256="0qijx9bf681xll75vwfzg14xnnlyb5svb8slanhzjw9czxr4axmb"; depends=[BiocGenerics graph RBGL]; }; - Structstrings = derive2 { name="Structstrings"; version="1.18.0"; sha256="10j1khhjd30wn9yfz4jhgx34z0yyijgwgydr8ric52337vwpx6dl"; depends=[BiocGenerics Biostrings crayon IRanges S4Vectors stringi stringr XVector]; }; - StructuralVariantAnnotation = derive2 { name="StructuralVariantAnnotation"; version="1.18.0"; sha256="1h3l3xbxwf2w2dl0qz72v68h5g77zhd2rr0g86l2dhn67mhy8ml2"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges rlang rtracklayer S4Vectors stringr SummarizedExperiment VariantAnnotation]; }; - SubCellBarCode = derive2 { name="SubCellBarCode"; version="1.18.0"; sha256="12a0ma7xdmmnr5ib0lvmk6981jyy8ypb2y0a1vq48f3ygnhpdfw3"; depends=[AnnotationDbi caret e1071 ggplot2 ggrepel gridExtra networkD3 org_Hs_eg_db Rtsne scatterplot3d]; }; - SummarizedBenchmark = derive2 { name="SummarizedBenchmark"; version="2.20.0"; sha256="16gzlkyf76fcd46ck417sxh86smivmaggqvyg0v9v0f4jac7610g"; depends=[BiocGenerics BiocParallel crayon digest dplyr ggplot2 mclust rlang S4Vectors sessioninfo stringr SummarizedExperiment tibble tidyr UpSetR]; }; - SummarizedExperiment = derive2 { name="SummarizedExperiment"; version="1.32.0"; sha256="1949k2658drmcrrr7v6748b40g2qym39n0ch50jxf0xmmlb1r04z"; depends=[Biobase BiocGenerics DelayedArray GenomeInfoDb GenomicRanges IRanges Matrix MatrixGenerics S4Arrays S4Vectors]; }; - Summix = derive2 { name="Summix"; version="2.8.0"; sha256="09bihbw5lhkrj88gmbcm63canvrsakwmddhb30j3vyppxbj2jvkp"; depends=[nloptr]; }; - SwathXtend = derive2 { name="SwathXtend"; version="2.24.0"; sha256="0fwv3phxbana637ydvlidhsrmq5x2vwcad4gj7mx2lbayk6k7dhm"; depends=[e1071 lattice openxlsx VennDiagram]; }; - SynExtend = derive2 { name="SynExtend"; version="1.14.0"; sha256="1vyi532mqj01szvjbfaxmyyyh1gcdb3pdrdvk1h1jbc2k1rmlk7n"; depends=[Biostrings DECIPHER IRanges S4Vectors]; }; - SynMut = derive2 { name="SynMut"; version="1.18.0"; sha256="02mpbivm30y102g64cyzky675dblln5w8ar3wv44k2rlgdvm4xfm"; depends=[BiocGenerics Biostrings seqinr stringr]; }; - TADCompare = derive2 { name="TADCompare"; version="1.12.1"; sha256="0n590a6mal49w6yjxbp7ldb4f78b0bkmzk080a5frfcm6mlmkyba"; depends=[cluster cowplot dplyr ggplot2 ggpubr HiCcompare magrittr Matrix PRIMME RColorBrewer reshape2 tidyr]; }; - TAPseq = derive2 { name="TAPseq"; version="1.14.1"; sha256="14df2wp3ll87lzcww5lxic4y2ymyzmidibrf5dmgplkgxrnhypgg"; depends=[BiocGenerics BiocParallel Biostrings BSgenome dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges S4Vectors tidyr]; }; - TBSignatureProfiler = derive2 { name="TBSignatureProfiler"; version="1.14.0"; sha256="0cixafwsp7fd5j0zfrf63vsljv9ryj3bd0idy3jcg6gip1l92bnn"; depends=[ASSIGN BiocParallel ComplexHeatmap DESeq2 DT edgeR gdata ggplot2 GSVA magrittr RColorBrewer reshape2 rlang ROCit S4Vectors singscore SummarizedExperiment]; }; - TCC = derive2 { name="TCC"; version="1.42.0"; sha256="0yy960fkfral1jr1myja40wmb5pzh6drigdsh62azylb3d9a7cmk"; depends=[baySeq DESeq2 edgeR ROC]; }; - TCGAbiolinks = derive2 { name="TCGAbiolinks"; version="2.30.0"; sha256="1k8xiv4bmil420176ckfda2r6y0s46dk1cm8dbywav86q28bmzzx"; depends=[biomaRt data_table downloader dplyr GenomicRanges ggplot2 httr IRanges jsonlite knitr plyr purrr R_utils readr rvest S4Vectors stringr SummarizedExperiment TCGAbiolinksGUI_data tibble tidyr XML xml2]; }; - TCGAutils = derive2 { name="TCGAutils"; version="1.22.2"; sha256="16pcz52ynx0syb5bcnkywllqxcfp7jipqgzgjr7q70k1z13ah7a3"; depends=[AnnotationDbi BiocBaseUtils BiocGenerics GenomeInfoDb GenomicDataCommons GenomicFeatures GenomicRanges IRanges MultiAssayExperiment RaggedExperiment rvest S4Vectors stringr SummarizedExperiment xml2]; }; - TCseq = derive2 { name="TCseq"; version="1.26.0"; sha256="0k97bxzwx3wj5jf558a5z51cjb841ga34lxgss3im1awcs99m3vn"; depends=[BiocGenerics cluster e1071 edgeR GenomicAlignments GenomicRanges ggplot2 IRanges locfit reshape2 Rsamtools SummarizedExperiment]; }; - TDbasedUFE = derive2 { name="TDbasedUFE"; version="1.2.0"; sha256="1n0ljmifcj38lbmyi1vaw05pxim8mvm75zbr42sl1n3p4vyrkvb6"; depends=[GenomicRanges MOFAdata readr rTensor shiny tximport tximportData]; }; - TDbasedUFEadv = derive2 { name="TDbasedUFEadv"; version="1.2.0"; sha256="07r45zv33rlmahcwrhvkr0m437p86yc7hampa91ddk19rh7x1151"; depends=[Biobase DOSE enrichplot enrichR GenomicRanges hash RTCGA rTensor shiny STRINGdb TDbasedUFE]; }; - TEKRABber = derive2 { name="TEKRABber"; version="1.6.0"; sha256="0l0ri7dg7jc3k7xyhwkf5rnmsgm4192143vxzc1j6fqhjl4q95bl"; depends=[apeglm biomaRt DESeq2 dplyr magrittr Rcpp SCBN]; }; - TENxIO = derive2 { name="TENxIO"; version="1.4.0"; sha256="1191xc69nqqzpm6l24k9bil2nzkjvximjrnkg61byivp45zf9v5y"; depends=[BiocBaseUtils BiocGenerics BiocIO GenomeInfoDb GenomicRanges Matrix MatrixGenerics R_utils RCurl readr S4Vectors SingleCellExperiment SummarizedExperiment]; }; - TEQC = derive2 { name="TEQC"; version="4.24.0"; sha256="0n5zw3ylkqikq0b1wwla89v8h4fksn2r7dcs57ljwkva03zlp9fa"; depends=[Biobase BiocGenerics hwriter IRanges Rsamtools]; }; - TFARM = derive2 { name="TFARM"; version="1.24.0"; sha256="1yjf1ck99hicm8fc14bd1rlkfx7infcy7iwh9dxrws6lggg1xh90"; depends=[arules fields GenomicRanges gplots stringr]; }; - TFBSTools = derive2 { name="TFBSTools"; version="1.40.0"; sha256="18msr889nygk1c3wsjxc9bv989zakkl9f1h2a6cnfy8rxhbxpvwq"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome caTools CNEr DBI DirichletMultinomial GenomeInfoDb GenomicRanges gtools IRanges RSQLite rtracklayer S4Vectors seqLogo TFMPvalue XML XVector]; }; - TFEA_ChIP = derive2 { name="TFEA.ChIP"; version="1.22.0"; sha256="0fawr8g13kw06z4a0k2vk38mgs4lv0ichrx0qxvn2qnbkx12f40g"; depends=[biomaRt dplyr GenomicFeatures GenomicRanges IRanges org_Hs_eg_db R_utils]; }; - TFHAZ = derive2 { name="TFHAZ"; version="1.24.0"; sha256="0084ida6g6sr2y56vi7wfxg5wy4wcg6jiqzjcw52pg14j7ha5qli"; depends=[GenomicRanges IRanges ORFik S4Vectors]; }; - TFutils = derive2 { name="TFutils"; version="1.22.0"; sha256="0f1rimk2qsfvyznm70zqa5xjcm21fz66fwyf1i48f7pfdwykbzig"; depends=[AnnotationDbi BiocFileCache dplyr DT GSEABase httr magrittr miniUI org_Hs_eg_db readxl rjson Rsamtools shiny]; }; - TIN = derive2 { name="TIN"; version="1.34.0"; sha256="0spk4zxx6w26wncnbp26fsiqs8i5ggh7wq3b8w61chl6klxx8nbb"; depends=[aroma_affymetrix data_table impute squash stringr WGCNA]; }; - TMixClust = derive2 { name="TMixClust"; version="1.24.0"; sha256="0qcdm3mv7yx48gz0af7h7bcgisyq3vn2qvbxzcim0fp4p9cgwrm2"; depends=[Biobase BiocParallel cluster flexclust gss mvtnorm SPEM zoo]; }; - TNBC_CMS = derive2 { name="TNBC.CMS"; version="1.18.0"; sha256="1syygq9br5icbjbmi1kq9gs7g3bw1vzmy8mlf8ga2rk1lw6ika90"; depends=[e1071 forestplot GGally ggplot2 ggpubr GSVA pheatmap pracma quadprog R_utils RColorBrewer SummarizedExperiment survival]; }; - TOAST = derive2 { name="TOAST"; version="1.16.0"; sha256="00wpgs2zdrgrh9xmp6m5h9xgv85mhdi36qvwg9gwbz9i7cfabmy1"; depends=[corpcor doParallel EpiDISH GGally ggplot2 limma nnls quadprog SummarizedExperiment tidyr]; }; - TOP = derive2 { name="TOP"; version="1.2.0"; sha256="0dnvxjsqfamcyzhwdaw8dxzw0y4sv9kmfjirhvwdzpprp4230wzh"; depends=[assertthat caret ClassifyR directPA doParallel dplyr ggnewscale ggplot2 ggraph ggrepel ggthemes glmnet Hmisc igraph latex2exp limma magrittr plotly pROC purrr reshape2 statmod stringr survival tibble tidygraph tidyr]; }; - TPP = derive2 { name="TPP"; version="3.30.0"; sha256="10lfvd2mrqdpbmsx7whkyawzjm7qr4ral669038lsjds2zf0ihk6"; depends=[Biobase biobroom broom data_table doParallel dplyr foreach futile_logger ggplot2 gridExtra knitr limma magrittr MASS mefa nls2 openxlsx plyr purrr RColorBrewer RCurl reshape2 rmarkdown stringr tibble tidyr VennDiagram VGAM]; }; - TPP2D = derive2 { name="TPP2D"; version="1.18.0"; sha256="0iaf34zk99bgdbnx4ygbpz7pgn3qblq1rdb5z6i80wh59y4519ff"; depends=[BiocParallel doParallel dplyr foreach ggplot2 limma MASS openxlsx RCurl stringr tidyr]; }; - TREG = derive2 { name="TREG"; version="1.6.0"; sha256="0zxbqnwwl2a9d7v0a2gn132vw8f2xw0gdig48r47gzc91bn0fsz5"; depends=[Matrix purrr rafalib SummarizedExperiment]; }; - TRESS = derive2 { name="TRESS"; version="1.8.0"; sha256="1vlvfacr7q9m1phrfs4xj51i6ia54scv53zbwqq58ri06m4whcl7"; depends=[AnnotationDbi GenomicFeatures GenomicRanges IRanges Matrix matrixStats Rsamtools rtracklayer S4Vectors]; }; - TRONCO = derive2 { name="TRONCO"; version="2.34.0"; sha256="0d48hwpl561ns5fyr0z046mqnz6790fqszwyxll1dh0mjilslahc"; depends=[bnlearn circlize doParallel foreach gridExtra gtable gtools igraph iterators R_matlab RColorBrewer Rgraphviz scales xtable]; }; - TSAR = derive2 { name="TSAR"; version="1.0.0"; sha256="1kghp5w3fpbhj01hmz6q8zm72pa4c3vwwhqvvb0jax1p56ny6xdw"; depends=[dplyr ggplot2 ggpubr jsonlite magrittr mgcv minpack_lm openxlsx plotly readxl rhandsontable shiny shinyjs shinyWidgets stringr tidyr]; }; - TSCAN = derive2 { name="TSCAN"; version="1.40.1"; sha256="0dgfqhq5ynjj11hscccab1ijhly2j1dmj9yhhpib83ivpj7l3cws"; depends=[combinat DelayedArray fastICA ggplot2 gplots igraph Matrix mclust mgcv plyr S4Vectors shiny SingleCellExperiment SummarizedExperiment TrajectoryUtils]; }; - TTMap = derive2 { name="TTMap"; version="1.24.0"; sha256="1qsja2byl2skdb8qhrp3jia234ynzrzkn658abqf8ycc04nd8xwp"; depends=[Biobase colorRamps rgl SummarizedExperiment]; }; - TVTB = derive2 { name="TVTB"; version="1.28.0"; sha256="11s5v2q02q9rmrry70zdsp8z1dx3mdgkgf9v1c9jilrj7ays2000"; depends=[AnnotationFilter BiocGenerics BiocParallel Biostrings ensembldb ensemblVEP GenomeInfoDb GenomicRanges GGally ggplot2 Gviz IRanges limma reshape2 Rsamtools S4Vectors SummarizedExperiment VariantAnnotation]; }; - TargetDecoy = derive2 { name="TargetDecoy"; version="1.8.0"; sha256="03y4s21kbyj7kcsr86zjib0abz8cn5xg89lpss7ykdrrgmh2g0jb"; depends=[ggplot2 ggpubr miniUI mzID mzR shiny]; }; - TargetScore = derive2 { name="TargetScore"; version="1.40.0"; sha256="0lrnxdry9yrhxbrmvfhgmkmj0nfqq50sa0xdq8caypz996dkz4qi"; depends=[Matrix pracma]; }; - TargetSearch = derive2 { name="TargetSearch"; version="2.4.2"; sha256="1f6dw6jgbf22szg2kjmrrc9vggm5ihyawxp245gidsfxhz875ycq"; depends=[assertthat ncdf4]; }; - TileDBArray = derive2 { name="TileDBArray"; version="1.12.0"; sha256="1mx1mmwgh3p8mpwrbpzv31zmq7la7pxnwqmcm91svnxkd36061wj"; depends=[DelayedArray Rcpp S4Vectors tiledb]; }; - TimiRGeN = derive2 { name="TimiRGeN"; version="1.11.0"; sha256="104j3rdl1mfklqvpsr753zlplr001cqbkphbhf2xrcfw8si7bgr2"; depends=[biomaRt clusterProfiler dplyr FreqProf ggdendro gghighlight ggplot2 gplots gtools igraph Mfuzz MultiAssayExperiment RCy3 readxl reshape2 rWikiPathways scales stringr tidyr]; }; - TissueEnrich = derive2 { name="TissueEnrich"; version="1.22.0"; sha256="13wcph6vy17y9xh16zrwn6dvqsm7lzgi9lkmz05bhqvlrmqxhn6j"; depends=[dplyr ensurer ggplot2 GSEABase SummarizedExperiment tidyr]; }; - TitanCNA = derive2 { name="TitanCNA"; version="1.40.0"; sha256="1n82j9sgaizykgxs8i7dc4jbxxxhmqng850qyzzglzliyq8859nz"; depends=[BiocGenerics data_table dplyr foreach GenomeInfoDb GenomicRanges IRanges VariantAnnotation]; }; - TnT = derive2 { name="TnT"; version="1.24.0"; sha256="1y4v2rphdils0rvkjsyfynncvmn1js1n5d5qhqmc2v8rhh1wjyv5"; depends=[Biobase data_table GenomeInfoDb GenomicRanges htmlwidgets IRanges jsonlite knitr S4Vectors]; }; - ToxicoGx = derive2 { name="ToxicoGx"; version="2.6.0"; sha256="0cwgf2ha1lm8v1hxmgn0y4j47laz23kcf10nj394wdfd6ymgm2mq"; depends=[assertthat Biobase BiocGenerics BiocParallel caTools CoreGx data_table downloader dplyr ggplot2 jsonlite limma magrittr reshape2 S4Vectors scales SummarizedExperiment tibble tidyr]; }; - TrajectoryGeometry = derive2 { name="TrajectoryGeometry"; version="1.10.1"; sha256="11lgcffh6pbjxlb20dhh34yvvs4iz9s6d32dn9lkn1z7b79x6vsd"; depends=[ggplot2 pracma rgl]; }; - TrajectoryUtils = derive2 { name="TrajectoryUtils"; version="1.10.1"; sha256="178v5r0nck9ils5k7hj92x7z1xk5zq6zyc78wqnz7s3shbnq9ld7"; depends=[igraph Matrix S4Vectors SingleCellExperiment SummarizedExperiment]; }; - TransView = derive2 { name="TransView"; version="1.46.0"; sha256="0knd6rxlgqrzacxax42zxm7k64kc5wqdsy7wanngc3psqla8g96m"; depends=[BiocGenerics GenomicRanges gplots IRanges Rhtslib S4Vectors zlibbioc]; }; - TreeAndLeaf = derive2 { name="TreeAndLeaf"; version="1.14.0"; sha256="131nbrngjldn0p5ghdr4rvwx3p5r04rdg5cqx61qvyja77nakpb1"; depends=[ape igraph RedeR]; }; - TreeSummarizedExperiment = derive2 { name="TreeSummarizedExperiment"; version="2.10.0"; sha256="1yvqixlivapasx0ircfhmc8ckr7sw86d9vfvnqj97p4r667x6z6g"; depends=[ape BiocGenerics BiocParallel Biostrings dplyr IRanges rlang S4Vectors SingleCellExperiment SummarizedExperiment treeio]; }; - Trendy = derive2 { name="Trendy"; version="1.24.1"; sha256="13plnyrr00m34dc25wqbk3ikxfd118vaz39z88ikhwa566k8kw5w"; depends=[BiocParallel DT gplots magrittr S4Vectors segmented shiny shinyFiles SummarizedExperiment]; }; - TurboNorm = derive2 { name="TurboNorm"; version="1.50.0"; sha256="0mwqd2y8h2g9lsjnkd9k2na7g5zrj89cs4balzyk45dbk8qvy5yk"; depends=[affy convert lattice limma marray]; }; - TypeInfo = derive2 { name="TypeInfo"; version="1.68.0"; sha256="1r299hi7kia0m6yhqc6n0qxzdbhk2lqrsnxgjiicgddy095cq1gs"; depends=[]; }; - UCell = derive2 { name="UCell"; version="2.6.2"; sha256="00v4b91f7y3zyndbl4wlfay8wljnqypfc05vrw15yr62d9smd35d"; depends=[BiocNeighbors BiocParallel data_table Matrix SingleCellExperiment SummarizedExperiment]; }; - UMI4Cats = derive2 { name="UMI4Cats"; version="1.12.0"; sha256="1imsndzvgz2ibhnb9y0cilr1kdkqnww9ncy1clviqjcb37iqy6w1"; depends=[annotate BiocFileCache BiocGenerics Biostrings BSgenome cowplot DESeq2 dplyr fda GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges magick magrittr org_Hs_eg_db R_utils rappdirs Rbowtie2 RColorBrewer regioneR reshape2 rlang Rsamtools S4Vectors scales ShortRead stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene zoo]; }; - UNDO = derive2 { name="UNDO"; version="1.44.0"; sha256="0lj8y4fcfl91g3mf4mnixg509m7viwx5fcwmsbzw3a71anmgcifi"; depends=[Biobase BiocGenerics boot MASS nnls]; }; - Ularcirc = derive2 { name="Ularcirc"; version="1.20.0"; sha256="1f4vcrmxsv1daqdrdw4kzqjawi03m9n6s1dvrhn4v3dq3y7sc9hi"; depends=[AnnotationDbi AnnotationHub BiocGenerics Biostrings BSgenome data_table DT GenomeInfoDb GenomeInfoDbData GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel gsubfn mirbase_db moments Organism_dplyr plotgardener R_utils S4Vectors shiny shinydashboard shinyFiles shinyjs yaml]; }; - UniProt_ws = derive2 { name="UniProt.ws"; version="2.42.0"; sha256="0qpp6r705llmlf38a8nvgr1q198lj7bwrlvnph4mcyb9sz82ra3d"; depends=[AnnotationDbi BiocBaseUtils BiocFileCache BiocGenerics httpcache httr jsonlite progress rjsoncons RSQLite]; }; - Uniquorn = derive2 { name="Uniquorn"; version="2.22.0"; sha256="1rd0jk7ifc2mhsslgf7nc9mz3nbqbm6svv86lv8y2j3y4iyivgwp"; depends=[data_table doParallel foreach GenomicRanges IRanges R_utils stringr VariantAnnotation WriteXLS]; }; - VAExprs = derive2 { name="VAExprs"; version="1.8.0"; sha256="0m150khl1zlhx43br4j7m9sgwav3qsam27hdxfz5pa5acy1hd87r"; depends=[CatEncoders DeepPINCS DiagrammeR keras mclust purrr scater SingleCellExperiment SummarizedExperiment tensorflow]; }; - VCFArray = derive2 { name="VCFArray"; version="1.18.0"; sha256="0b2dnhr9nivkprk92zvmvyqcsf074dyp5x25hi77kzklvlip1a0h"; depends=[BiocGenerics DelayedArray GenomicFiles GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; - VDJdive = derive2 { name="VDJdive"; version="1.4.0"; sha256="1sd6gip0j77zsfq68dgxq1szp6vl4j7g2dvnsi1903691r6wdfkf"; depends=[BiocParallel cowplot ggplot2 gridExtra IRanges Matrix RColorBrewer Rcpp S4Vectors SingleCellExperiment SummarizedExperiment]; }; - VERSO = derive2 { name="VERSO"; version="1.12.0"; sha256="1wddzvvhmwv4y7zd1lg02zgmm3pwyz8nkn9c9vx55pnwa4p97igj"; depends=[ape data_tree Rfast]; }; - VaSP = derive2 { name="VaSP"; version="1.14.0"; sha256="0y5kc6dw2ll2c48avnvcw94iv6z6m89cghzlwwys0yawsgzj6pfy"; depends=[ballgown cluster GenomeInfoDb GenomicAlignments GenomicRanges IRanges matrixStats Rsamtools S4Vectors]; }; - VanillaICE = derive2 { name="VanillaICE"; version="1.64.1"; sha256="112dkp3j13vy41cgvxlm09v2ns7vcsf7qqdkvrp1qfqv143212si"; depends=[Biobase BiocGenerics BSgenome_Hsapiens_UCSC_hg18 crlmm data_table foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment]; }; - VarCon = derive2 { name="VarCon"; version="1.10.0"; sha256="19xwdbnrn407hsm67lrv4hsb04pi78y6ap917zxb8knjwi6wfy6l"; depends=[Biostrings BSgenome GenomicRanges ggplot2 IRanges shiny shinycssloaders shinyFiles]; }; - VariantAnnotation = derive2 { name="VariantAnnotation"; version="1.48.1"; sha256="0l9xkrvsrc3m65kdjcyir6jkpa718g7idziwr0pp5yaj84bd3xia"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges MatrixGenerics Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; }; - VariantExperiment = derive2 { name="VariantExperiment"; version="1.16.0"; sha256="1ibw2qzab9drn4y95k2s9aam0f2vimzjbq1kkpsqnm206051flwb"; depends=[Biostrings DelayedArray DelayedDataFrame GDSArray gdsfmt GenomicRanges IRanges S4Vectors SeqArray SNPRelate SummarizedExperiment]; }; - VariantFiltering = derive2 { name="VariantFiltering"; version="1.38.0"; sha256="01czx88dzqm8qv44kyy1n7b999wgfklxzgvmjh10chf677phnzsr"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores graph Gviz IRanges RBGL Rsamtools S4Vectors shiny shinyjs shinythemes shinyTree SummarizedExperiment VariantAnnotation XVector]; }; - VariantTools = derive2 { name="VariantTools"; version="1.44.0"; sha256="1ibg4cdpbv4ph3y4r90j8zfwr1cy1z33p4bazhzyi2zv3xa1nrq6"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges IRanges Matrix Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; - VegaMC = derive2 { name="VegaMC"; version="3.40.0"; sha256="1s9vz2kjavsf7ja5bqmvcylawjh4gz3chvr251xgiq56n7wmyq08"; depends=[Biobase biomaRt]; }; - VennDetail = derive2 { name="VennDetail"; version="1.18.0"; sha256="09w3i0dp2lhjj4m62ql7ad98kflsyys73xnw76jj97cyqa0mgsxr"; depends=[dplyr futile_logger ggplot2 magrittr purrr tibble UpSetR VennDiagram]; }; - ViSEAGO = derive2 { name="ViSEAGO"; version="1.16.0"; sha256="1c20kbr640l69psbrn5a7xmrv6hgzyznmwdvbxbhdn96i1cirxk4"; depends=[AnnotationDbi AnnotationForge biomaRt data_table dendextend DiagrammeR DT dynamicTreeCut fgsea ggplot2 GO_db GOSemSim heatmaply htmlwidgets igraph plotly processx R_utils RColorBrewer scales topGO UpSetR]; }; - Voyager = derive2 { name="Voyager"; version="1.4.0"; sha256="0f7m8zs3ycb3hsk00qkpq196nagrm5cnz5383n21jlxil5q6ajp0"; depends=[BiocParallel bluster ggnewscale ggplot2 lifecycle Matrix matrixStats patchwork rlang RSpectra S4Vectors scales scico sf SingleCellExperiment SpatialExperiment SpatialFeatureExperiment spdep SummarizedExperiment terra]; }; - VplotR = derive2 { name="VplotR"; version="1.12.1"; sha256="0x6cdikwgva91xcqss69j28x27pzkpbac1c178x773nzxrybsh7v"; depends=[cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr RColorBrewer reshape2 Rsamtools S4Vectors zoo]; }; - Wrench = derive2 { name="Wrench"; version="1.20.0"; sha256="11g6a2315hllf197ssccybhv6i7p48n7bv2amzpgxs7bs7qg3k9d"; depends=[limma locfit matrixStats]; }; - XDE = derive2 { name="XDE"; version="2.48.0"; sha256="0xnxbyrdafcx5dqms0sqp70bm62w1g92mjidmj99jm50ymjxpfl9"; depends=[Biobase BiocGenerics genefilter GeneMeta gtools mvtnorm RColorBrewer siggenes]; }; - XINA = derive2 { name="XINA"; version="1.20.0"; sha256="1cnw2zbjfs8qcgqrx557g00m59h5pldcx788v9r4gn2f70rx7vx3"; depends=[alluvial ggplot2 gridExtra igraph mclust plyr STRINGdb]; }; - XNAString = derive2 { name="XNAString"; version="1.10.0"; sha256="0g47fdbgpvprx71qng0kdqicv2p0gk5pyx0c0zpa6ffv5mbhjhy4"; depends=[Biostrings BSgenome data_table formattable future_apply GenomicRanges IRanges Rcpp S4Vectors stringi stringr]; }; - XVector = derive2 { name="XVector"; version="0.42.0"; sha256="0h03imdl0pyy714kmddsdnsv69bd8kr7bhi9wq9z18y8ahg5cqx1"; depends=[BiocGenerics IRanges S4Vectors zlibbioc]; }; - Xeva = derive2 { name="Xeva"; version="1.18.0"; sha256="1qyr1caf63f0sc6mrww6sdn7hh44r90rz6xdslm26b1827gz9zfn"; depends=[BBmisc Biobase ComplexHeatmap doParallel downloader ggplot2 nlme PharmacoGx Rmisc scales]; }; - YAPSA = derive2 { name="YAPSA"; version="1.28.0"; sha256="07dxhaywad9ivkrc454hhizfw6a5yvarrc5fp5za2jgsznv408wl"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 circlize ComplexHeatmap corrplot dendextend doParallel dplyr GenomeInfoDb GenomicRanges GetoptLong ggbeeswarm ggplot2 gridExtra gtrellis KEGGREST limSolve magrittr PMCMRplus pracma reshape2 SomaticSignatures VariantAnnotation]; }; - ZygosityPredictor = derive2 { name="ZygosityPredictor"; version="1.2.0"; sha256="00vwrz9f8bcrksb41vklx1w8wp44vvbp5jac5bw5c405arman9nc"; depends=[DelayedArray dplyr GenomicAlignments GenomicRanges igraph IRanges purrr Rsamtools stringr tibble VariantAnnotation]; }; - a4 = derive2 { name="a4"; version="1.50.1"; sha256="0sibsmn7ma2imhfn2pn1fvy6hinzlmsczmx944fzg0aj1lpjcdqr"; depends=[a4Base a4Classif a4Core a4Preproc a4Reporting]; }; - a4Base = derive2 { name="a4Base"; version="1.50.0"; sha256="0hin5lpwa7cxa862jh3y7d8kq3q9bv76ri08b27jxzyr5p7xwcr2"; depends=[a4Core a4Preproc annaffy Biobase genefilter glmnet gplots limma mpm multtest]; }; - a4Classif = derive2 { name="a4Classif"; version="1.50.0"; sha256="1wxkyqyhb3mj04kmaisd09dapywjpc081ihaig5rs04k611ddvhi"; depends=[a4Core a4Preproc Biobase glmnet pamr ROCR varSelRF]; }; - a4Core = derive2 { name="a4Core"; version="1.50.0"; sha256="0iismcsnkyb7m4dwmxw5pyvscj2bhp6zw9hpdb2ff91viynbknq1"; depends=[Biobase glmnet]; }; - a4Preproc = derive2 { name="a4Preproc"; version="1.50.0"; sha256="19nf3bc0gdwixif50f3bs47a1kw1w1lir1dz4l8zqdp3h8gfmj60"; depends=[Biobase BiocGenerics]; }; - a4Reporting = derive2 { name="a4Reporting"; version="1.50.0"; sha256="16lgbwsgwp77x9a8c3hr1aqhp36skzz72xhbzm0a7w3kagmd8gn6"; depends=[xtable]; }; - aCGH = derive2 { name="aCGH"; version="1.80.0"; sha256="1qckqdil1cq8lbrj9di96w9934r1fp48xpmfdwp4f2vw9pjadi1q"; depends=[Biobase cluster multtest survival]; }; - abseqR = derive2 { name="abseqR"; version="1.20.0"; sha256="0s865nahgm0by2nvjydkjlhkj2sxmrvcrhw7rmm46ld4g10xsrc8"; depends=[BiocParallel BiocStyle circlize flexdashboard ggcorrplot ggdendro ggplot2 gridExtra knitr plotly plyr png RColorBrewer reshape2 rmarkdown stringr vegan VennDiagram]; }; - acde = derive2 { name="acde"; version="1.32.0"; sha256="1rqyjj4lgqxs372qx8p3qx2napww0djh4jz8hzgv86x9r202kk9p"; depends=[boot]; }; - adSplit = derive2 { name="adSplit"; version="1.72.0"; sha256="0av0kji4r788cn5808g13svqpydq6xk4d2awpzpsckz7xbjyx0ya"; depends=[AnnotationDbi Biobase cluster GO_db KEGGREST multtest]; }; - adductomicsR = derive2 { name="adductomicsR"; version="1.18.0"; sha256="0fb670gxzl5aq6vmb5d2l04r0408gxrqs06k1a3b3pzkdbd7qxwm"; depends=[adductData ade4 AnnotationHub bootstrap data_table doSNOW dplyr DT ExperimentHub fastcluster foreach fpc mzR OrgMassSpecR pastecs pracma RcppEigen reshape2 rvest smoother zoo]; }; - adverSCarial = derive2 { name="adverSCarial"; version="1.0.0"; sha256="1ynd51ldy7xpnlxzchyi7pgh81wwz2vqvgn9810c2rwm5n6hqv0a"; depends=[DelayedArray gtools S4Vectors]; }; - affxparser = derive2 { name="affxparser"; version="1.74.0"; sha256="18qjdsgkmdhwv2c4sbixp7fn69sbjdipn363jnms95dksdj2xvr9"; depends=[]; }; - affy = derive2 { name="affy"; version="1.80.0"; sha256="0lsvcv7nprmsh62d0r2v44a5n915crvv1cbj9ba6fdggj7wp8zyk"; depends=[affyio Biobase BiocGenerics BiocManager preprocessCore zlibbioc]; }; - affyContam = derive2 { name="affyContam"; version="1.60.0"; sha256="1jxp4qacclfl07ig8dfwy5gpnsqrfqnjbci1a7znc7acqg0kv0zv"; depends=[affy affydata Biobase]; }; - affyILM = derive2 { name="affyILM"; version="1.54.0"; sha256="1sbgc787gvcnpjhm0hv80rsms679wlvphq2ch7s28zdlaa2vz7sv"; depends=[affxparser affy Biobase gcrma]; }; - affyPLM = derive2 { name="affyPLM"; version="1.78.0"; sha256="0l7rfwj1bdkk9vd5j0zby2ijpapmd5k0s6l84zy4ld47vabxyaa6"; depends=[affy Biobase BiocGenerics gcrma preprocessCore zlibbioc]; }; - affycomp = derive2 { name="affycomp"; version="1.78.0"; sha256="0818mgwny9hznw7lawrvmk11nwy0wxgjnlkf083vv3js4aq31gfp"; depends=[Biobase]; }; - affycoretools = derive2 { name="affycoretools"; version="1.74.0"; sha256="0bgv8a7hf8ns472zfryf255zqdikjv08np6k6hkpvyivad25vpwy"; depends=[affy AnnotationDbi Biobase BiocGenerics DBI edgeR gcrma ggplot2 Glimma GOstats gplots hwriter lattice limma oligoClasses ReportingTools RSQLite S4Vectors xtable]; }; - affyio = derive2 { name="affyio"; version="1.72.0"; sha256="01shv7936cb5yynxkdssczl752ayv2rx4qkrkddqhi5smksw13z9"; depends=[zlibbioc]; }; - affylmGUI = derive2 { name="affylmGUI"; version="1.76.0"; sha256="1431zmh9van9605lh0i96as48zih17s3cfhjw94v37rswfq09fkg"; depends=[affy affyio affyPLM AnnotationDbi BiocGenerics BiocManager gcrma limma R2HTML tkrplot xtable]; }; - aggregateBioVar = derive2 { name="aggregateBioVar"; version="1.12.0"; sha256="1i04hhncz9lhjp730gyknd8v7zakz1whc2a5pw3pn37h8k9mq5la"; depends=[Matrix rlang S4Vectors SingleCellExperiment SummarizedExperiment tibble]; }; - agilp = derive2 { name="agilp"; version="3.34.0"; sha256="0xbbcmnbnj7y3a1wndv6zhqhrwdpdj6207wh4n0qz794akciw84a"; depends=[]; }; - airpart = derive2 { name="airpart"; version="1.10.0"; sha256="1bdlg078nlpibbn3y1cbkglhlm440crx3alzhv9k0psv6arg2kqb"; depends=[apeglm clue ComplexHeatmap dplyr dynamicTreeCut emdbook forestplot ggplot2 lpSolve matrixStats mclust pbapply plyr RColorBrewer rlang S4Vectors scater SingleCellExperiment smurf SummarizedExperiment]; }; - alabaster = derive2 { name="alabaster"; version="1.2.0"; sha256="0l40hl5jwsyxnkqbzsmc8k8bvyi88rfhaiaj74aba04jqj4ga23d"; depends=[alabaster_base alabaster_bumpy alabaster_mae alabaster_matrix alabaster_ranges alabaster_sce alabaster_se alabaster_spatial alabaster_string alabaster_vcf]; }; - alabaster_base = derive2 { name="alabaster.base"; version="1.2.1"; sha256="1vpzc7h8589v49jyjgca2wyb1q548xfqnslvblmvamv28z3x2053"; depends=[alabaster_schemas jsonlite jsonvalidate Rcpp rhdf5 Rhdf5lib S4Vectors]; }; - alabaster_bumpy = derive2 { name="alabaster.bumpy"; version="1.2.0"; sha256="0z95qbg1nl5zq5wbq351mn5i3vh0ilr9g330cqc2j1ng9rjhr5cf"; depends=[alabaster_base BiocGenerics BumpyMatrix IRanges Matrix S4Vectors]; }; - alabaster_files = derive2 { name="alabaster.files"; version="1.0.0"; sha256="104ar597n91nhlvcvx0pl4wrymlnflvg76gfj6kjgy55q6v53i2j"; depends=[alabaster_base BiocGenerics Biostrings Rsamtools rtracklayer S4Vectors]; }; - alabaster_mae = derive2 { name="alabaster.mae"; version="1.2.0"; sha256="1ag8g2076gzhzf8iqjszq8r4jirzqsx2hf2bkdg5x30q5g03d4ii"; depends=[alabaster_base alabaster_se MultiAssayExperiment S4Vectors]; }; - alabaster_matrix = derive2 { name="alabaster.matrix"; version="1.2.0"; sha256="0ghgz4vys64y4z3i8bcnbz3mkwig0mhh2zf5ig59xvqn6k0xbvx5"; depends=[alabaster_base BiocGenerics DelayedArray HDF5Array Matrix rhdf5 S4Vectors SparseArray]; }; - alabaster_ranges = derive2 { name="alabaster.ranges"; version="1.2.0"; sha256="0p66n4sarzgr5pl9qhy9rjycb4s1xcigj6b1hk0fwqvmkpgfs53d"; depends=[alabaster_base BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - alabaster_sce = derive2 { name="alabaster.sce"; version="1.2.0"; sha256="1gk4iy7f9kvn0dsl8mkwrjd40yrjmy806yfjsmliih6s3vgmwcvz"; depends=[alabaster_base alabaster_se SingleCellExperiment]; }; - alabaster_schemas = derive2 { name="alabaster.schemas"; version="1.2.0"; sha256="0swpd4jxf75g3p4yxscb0f3q74qm1sy3jjr5y55wqkb5c22lmmy1"; depends=[]; }; - alabaster_se = derive2 { name="alabaster.se"; version="1.2.0"; sha256="14rvdyd4b1ck303n18nfsvrxmjgpikhrj308gmn3g7158q8zfdwx"; depends=[alabaster_base alabaster_matrix alabaster_ranges BiocGenerics GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; - alabaster_spatial = derive2 { name="alabaster.spatial"; version="1.2.0"; sha256="1jdhiqypsagzpa669l6sm7y1hpz6i6mjck47yvv3f7xja3pwz66x"; depends=[alabaster_base alabaster_sce jsonlite S4Vectors SpatialExperiment SummarizedExperiment]; }; - alabaster_string = derive2 { name="alabaster.string"; version="1.2.0"; sha256="1gppm56mzf1by8gs37aabd03hamyghlg2vv3z95r4alb515rfgmm"; depends=[alabaster_base Biostrings]; }; - alabaster_vcf = derive2 { name="alabaster.vcf"; version="1.2.0"; sha256="0xzwcn112bp3mz8g1wmnkklsjm4p2hs237mgv9vxfsb6022njci9"; depends=[alabaster_base alabaster_se alabaster_string Rsamtools S4Vectors VariantAnnotation]; }; - alevinQC = derive2 { name="alevinQC"; version="1.18.0"; sha256="0lhbh9xgkbrad9fqvxl4c6y0f2kgibn6sinp8znysk5m9z0ngpwp"; depends=[cowplot dplyr DT GGally ggplot2 Rcpp rjson rlang rmarkdown shiny shinydashboard tximport]; }; - altcdfenvs = derive2 { name="altcdfenvs"; version="2.64.0"; sha256="17kgiqa5dbfp74jrm565wlx9sj4ydbds2y8ahs7dikvdvm725qsn"; depends=[affy Biobase BiocGenerics Biostrings hypergraph makecdfenv S4Vectors]; }; - amplican = derive2 { name="amplican"; version="1.24.0"; sha256="0xsw6226yyyl5zgmcyfim6dxj04zrpzbd1288l0hysq1s3b1yslw"; depends=[BiocGenerics BiocParallel Biostrings cluster data_table dplyr GenomeInfoDb GenomicRanges ggplot2 ggthemes gridExtra gtable IRanges knitr Matrix matrixStats Rcpp rmarkdown S4Vectors ShortRead stringr waffle]; }; - animalcules = derive2 { name="animalcules"; version="1.18.3"; sha256="0j8fa5cr6s20bgw7v62by61q7nk8iw64v4wshwbd2cc36gr7s3c8"; depends=[ape assertthat caret covr DESeq2 dplyr DT forcats ggplot2 GUniFrac lattice limma magrittr Matrix MultiAssayExperiment plotly rentrez reshape2 ROCit S4Vectors scales shiny shinyjs SummarizedExperiment tibble tsne umap vegan XML]; }; - annaffy = derive2 { name="annaffy"; version="1.74.0"; sha256="1mdv0x9lnr0bm96h5f9104nqg2j6cjqvp5prrxx10j0d6464vmkw"; depends=[AnnotationDbi Biobase BiocManager DBI GO_db]; }; - annmap = derive2 { name="annmap"; version="1.44.0"; sha256="1gf0qdhj4ijgb6b67fh94zx084k5r87la3d7vc0qxs413rvr4mj8"; depends=[Biobase BiocGenerics DBI digest genefilter GenomicRanges IRanges lattice RMySQL Rsamtools]; }; - annotate = derive2 { name="annotate"; version="1.80.0"; sha256="10mdlbgbvdj967bih6wpvxmy91r10p8frhgcwv8mhv4g94ardasd"; depends=[AnnotationDbi Biobase BiocGenerics DBI httr XML xtable]; }; - annotationTools = derive2 { name="annotationTools"; version="1.76.0"; sha256="0g086rj06k3wac24zx66dw1yc1bzv25bmlbjbpcpgdcmyjb1i8sf"; depends=[Biobase]; }; - annotatr = derive2 { name="annotatr"; version="1.28.0"; sha256="16nkxnbsmr0y6km794x2iwbkyrkf0svg6ln3qkqnw0a47a3cbm65"; depends=[AnnotationDbi AnnotationHub dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges readr regioneR reshape2 rtracklayer S4Vectors]; }; - anota = derive2 { name="anota"; version="1.50.0"; sha256="1b1r7jwilwvl89fw3rqascyhy8wnm8y81lnx85pwjk55ld56jlb1"; depends=[multtest qvalue]; }; - anota2seq = derive2 { name="anota2seq"; version="1.24.0"; sha256="0kyxwhj5vq5z4v3x3hfb9ks3h37axqskyj9rzyj2bzsy2yk9hajn"; depends=[DESeq2 edgeR limma multtest qvalue RColorBrewer SummarizedExperiment]; }; - antiProfiles = derive2 { name="antiProfiles"; version="1.42.0"; sha256="14lzyq08gnm9r99xwaqh50sz0dwzhmiyyylkg239dlbw80zmv404"; depends=[locfit matrixStats]; }; - apComplex = derive2 { name="apComplex"; version="2.68.0"; sha256="1y3c3358y7ynn5lj2gcy9ll2gxnnlv689pj0bgr2gsnhbss1kw1r"; depends=[graph org_Sc_sgd_db RBGL Rgraphviz]; }; - apeglm = derive2 { name="apeglm"; version="1.24.0"; sha256="0cj9yzmh9w3fk3rxmk2k5j55r42mmz9znszmr4l160mr23alkzx4"; depends=[emdbook GenomicRanges Rcpp RcppEigen RcppNumerical SummarizedExperiment]; }; - appreci8R = derive2 { name="appreci8R"; version="1.20.2"; sha256="0qra6g6s4j8by9ils0i8j56q7922ilsjivh97f6ng01ikyg3s02j"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 COSMIC_67 DT GenomicFeatures GenomicRanges GenomicScores Homo_sapiens IRanges MafDb_1Kgenomes_phase3_hs37d5 MafDb_ExAC_r1_0_hs37d5 MafDb_gnomADex_r2_1_hs37d5 openxlsx PolyPhen_Hsapiens_dbSNP131 rentrez Rsamtools S4Vectors seqinr shiny shinyjs SIFT_Hsapiens_dbSNP137 SNPlocs_Hsapiens_dbSNP144_GRCh37 stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation XtraSNPlocs_Hsapiens_dbSNP144_GRCh37]; }; - aroma_light = derive2 { name="aroma.light"; version="3.32.0"; sha256="1i6rml0slfsf01a3sphyzrxp2z759psq5bv9cfy5dxx44fnav8b8"; depends=[matrixStats R_methodsS3 R_oo R_utils]; }; - arrayMvout = derive2 { name="arrayMvout"; version="1.60.0"; sha256="0z3ksx0yigan5aiq7vsdx78khlrcdxa4yd5b46rfn83gsrjbxzhz"; depends=[affy affyContam Biobase lumi mdqc parody]; }; - arrayQuality = derive2 { name="arrayQuality"; version="1.80.0"; sha256="1bm46zf5c1i7fd848bqajv3agl05b93xsvam7034033ypyx6bf1z"; depends=[gridBase hexbin limma marray RColorBrewer]; }; - arrayQualityMetrics = derive2 { name="arrayQualityMetrics"; version="3.58.0"; sha256="1k80ih7r3hf48r9rp9dl2wl8m17620dqr4fch49kdsq97hm5q5dm"; depends=[affy affyPLM beadarray Biobase genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG svglite vsn XML]; }; - artMS = derive2 { name="artMS"; version="1.20.0"; sha256="19zd0p37pqk01ns2krjj80mz2c07b8q5qbcdi8czd0vvwkp1cxq7"; depends=[AnnotationDbi bit64 circlize cluster corrplot data_table dplyr getopt ggdendro ggplot2 ggrepel gplots limma MSstats openxlsx org_Hs_eg_db pheatmap plotly plyr RColorBrewer scales seqinr stringr tidyr UpSetR VennDiagram yaml]; }; - atSNP = derive2 { name="atSNP"; version="1.18.0"; sha256="1nksx6al1cr6apknvrabi3gdbr7m61ms81nmkq4qykx5aysmp8mv"; depends=[BiocFileCache BiocParallel BSgenome data_table ggplot2 lifecycle motifStack rappdirs Rcpp testthat]; }; - atena = derive2 { name="atena"; version="1.8.0"; sha256="1qfgy76d65hbx32fw1yf20n1vavylcafb9fgqqp02r455vk3xzng"; depends=[AnnotationHub BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges Matrix matrixStats Rsamtools S4Vectors sparseMatrixStats SQUAREM SummarizedExperiment]; }; - attract = derive2 { name="attract"; version="1.54.0"; sha256="0lk8gfbccrxly7gn629497sxz0mj3m9wcwdahqv1m7l6fjnf5563"; depends=[AnnotationDbi Biobase cluster GOstats KEGGREST limma org_Hs_eg_db reactome_db]; }; - autonomics = derive2 { name="autonomics"; version="1.10.2"; sha256="1chgsckv6vvx8sxfbd7ds0pm67w2yaijzf68j8zm7pplz44kr9m9"; depends=[abind assertive_base assertive_files assertive_numbers assertive_sets BiocFileCache BiocGenerics bit64 colorspace data_table dplyr edgeR ggplot2 ggrepel gridExtra limma magrittr matrixStats MultiAssayExperiment pcaMethods R_utils rappdirs readxl rlang S4Vectors scales stringi SummarizedExperiment tidyr]; }; - awst = derive2 { name="awst"; version="1.10.0"; sha256="0hry7ynv69hqbwyhlsilf1f9w8yadidbn2ckm5dx9mnb5ihgkyvj"; depends=[SummarizedExperiment]; }; - bacon = derive2 { name="bacon"; version="1.30.0"; sha256="065b4xf5i1bx08494nm3r497bs47s5vf99l2g37nlpvxf7pypvrz"; depends=[BiocParallel ellipse ggplot2]; }; - ballgown = derive2 { name="ballgown"; version="2.34.0"; sha256="1r3qz6y97zhp7swcv2ls1h6cz0l66y5ap00wx9wlqxv14sljd135"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; }; - bambu = derive2 { name="bambu"; version="3.4.0"; sha256="02pcab8jfwlx4y00yky63anba61bb1h884m0f6ajvasfpgl30w6i"; depends=[BiocGenerics BiocParallel BSgenome data_table dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment tidyr xgboost]; }; - bamsignals = derive2 { name="bamsignals"; version="1.34.0"; sha256="1qv2gydn8awrkbhdrgxm8zxpicphqc29rwzkj3vyaa9glmnx2y34"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; }; - bandle = derive2 { name="bandle"; version="1.6.0"; sha256="1hszmd73axh1mg3zgj7i11fz03cg2v5xjaf7kx5npbdgi3yd4b2b"; depends=[BH Biobase BiocParallel BiocStyle circlize dplyr ggalluvial ggplot2 ggrepel knitr lbfgs MSnbase plyr pRoloc pRolocdata Rcpp RcppArmadillo rlang robustbase S4Vectors tidyr]; }; - banocc = derive2 { name="banocc"; version="1.26.0"; sha256="0y6mizkbx3s2x6465g53q87q0sixxrxhjvjmvwiilhirxf4x7hgp"; depends=[coda mvtnorm rstan stringr]; }; - barcodetrackR = derive2 { name="barcodetrackR"; version="1.10.0"; sha256="1w5p6dqagf3g27ymqsxdim0qhnwm11rrs3nnpp4mj8jcxm8wjsh9"; depends=[circlize cowplot dplyr ggdendro ggplot2 ggridges magrittr plyr proxy RColorBrewer rlang S4Vectors scales shiny SummarizedExperiment tibble tidyr vegan viridis]; }; - basecallQC = derive2 { name="basecallQC"; version="1.26.0"; sha256="0ak5rbrzbazz48x75alihzmlgll46l2hnyh11pf5n7gvws6skrps"; depends=[data_table dplyr DT ggplot2 knitr lazyeval magrittr prettydoc raster rmarkdown ShortRead stringr tidyr XML yaml]; }; - basilisk = derive2 { name="basilisk"; version="1.14.3"; sha256="0hmx2jpfmjv87mp99mzbbzg00m6arpkpc5prkfav065iwjqbqnpd"; depends=[basilisk_utils dir_expiry reticulate]; }; - basilisk_utils = derive2 { name="basilisk.utils"; version="1.14.1"; sha256="19m4h90rkk6mizllkih2xmxag8nb45qss3vydkkyj62s5zjhfh27"; depends=[dir_expiry]; }; - batchelor = derive2 { name="batchelor"; version="1.18.1"; sha256="1z4ddkdd3mzqg0c6l94qmrdwrm7427k5xiwzgkzx43gh1j4911d5"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats igraph Matrix Rcpp ResidualMatrix S4Vectors ScaledMatrix scuttle SingleCellExperiment SummarizedExperiment]; }; - bayNorm = derive2 { name="bayNorm"; version="1.20.0"; sha256="01lv4w1x43x3f9sdrqikhsr1gdvkgqzrgcd9wnjj76qsljn57ifq"; depends=[BB BiocParallel doSNOW fitdistrplus foreach iterators locfit MASS Matrix Rcpp RcppArmadillo RcppProgress SingleCellExperiment SummarizedExperiment]; }; - baySeq = derive2 { name="baySeq"; version="2.36.0"; sha256="1b5vvzl0kkm6kb03vr6m6sdlr3azpc24933a7ayxkiffmf2wbi0g"; depends=[abind edgeR GenomicRanges]; }; - bcSeq = derive2 { name="bcSeq"; version="1.24.0"; sha256="050rh9ina8wlkk6d66l2y81vblgyldsyy9fqxk7kpnzmjani919k"; depends=[Biostrings Matrix Rcpp]; }; - beachmat = derive2 { name="beachmat"; version="2.18.1"; sha256="1kz8jn3kaqrhvk1dd92l7w45mmwabcqb0508fv4i4w307ja8xk2l"; depends=[BiocGenerics DelayedArray Matrix Rcpp SparseArray]; }; - beachmat_hdf5 = derive2 { name="beachmat.hdf5"; version="1.0.0"; sha256="1ihx1c7j1k52c45f6q17iwvrnym3fdx93lhxk73la6ig6q6y0p85"; depends=[beachmat DelayedArray HDF5Array Rcpp Rhdf5lib]; }; - beadarray = derive2 { name="beadarray"; version="2.52.0"; sha256="0qwka7549mlv2x80bjrzdsy4a6h35yxrhj2cxss9aigwsbjb7sjr"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 hexbin illuminaio IRanges limma reshape2]; }; - beadarraySNP = derive2 { name="beadarraySNP"; version="1.68.0"; sha256="1vrizh7fpzv1w2gki0qxhphrfj1jj6m6bjsjsbw0b4n4invybzps"; depends=[Biobase quantsmooth]; }; - beer = derive2 { name="beer"; version="1.6.0"; sha256="1dapyrp1rdy2smi6v7cvj1wv5mhrkvv3sz1aqpim8vf18f9132py"; depends=[BiocParallel cli edgeR PhIPData progressr rjags SummarizedExperiment]; }; - benchdamic = derive2 { name="benchdamic"; version="1.8.2"; sha256="036593sjn1ijx95rz6jfkhmkdjlyqlpxlip6d7cgmzal8v76srb4"; depends=[ALDEx2 ANCOMBC BiocParallel cowplot dearseq DESeq2 edgeR ggdendro ggplot2 ggridges GUniFrac limma lme4 Maaslin2 MAST metagenomeSeq MGLM MicrobiomeStat mixOmics NOISeq phyloseq plyr RColorBrewer reshape2 Seurat SummarizedExperiment tidytext TreeSummarizedExperiment zinbwave]; }; - bgx = derive2 { name="bgx"; version="1.68.3"; sha256="1a3hq2i1mxf6dpkk82b6y88q5fcjbqpdcxqplkfp5d2slzsqc3jp"; depends=[affy Biobase gcrma Rcpp]; }; - bigmelon = derive2 { name="bigmelon"; version="1.28.0"; sha256="1j80f7k39p23s6fym3nia73g8d1v44hdiv73igcq6fnsllxg40hr"; depends=[Biobase BiocGenerics gdsfmt GEOquery illuminaio methylumi minfi wateRmelon]; }; - bioCancer = derive2 { name="bioCancer"; version="1.30.8"; sha256="19630ybvly13qw2dhcnh3wicw7hnjyvw37v4hz640pkp4nsdparn"; depends=[AlgDesign AnnotationDbi Biobase cBioPortalData clusterProfiler DiagrammeR DOSE dplyr DT geNetClassifier GO_db htmlwidgets org_Bt_eg_db org_Hs_eg_db plyr r_import R_methodsS3 R_oo radiant_data reactome_db ReactomePA shiny shinythemes tibble tidyr visNetwork XML]; }; - bioDist = derive2 { name="bioDist"; version="1.74.0"; sha256="0ngpysb89wag4wvcq83ddjxhy1zhl32b2fy2fg5laa4g8xfrqaxz"; depends=[Biobase KernSmooth]; }; - bioassayR = derive2 { name="bioassayR"; version="1.40.0"; sha256="1mm1nzdz9cl8mf33yiyaspqkx4sbqhhs6m9jfgl42fhscrhaxfsi"; depends=[BiocGenerics ChemmineR DBI Matrix rjson RSQLite XML]; }; - biobroom = derive2 { name="biobroom"; version="1.34.0"; sha256="1ivclipy2igf8ax7f0pqrcqflcm7h0a8ny6nfa0200vp99an8ymf"; depends=[Biobase broom dplyr tidyr]; }; - biobtreeR = derive2 { name="biobtreeR"; version="1.14.0"; sha256="18p5r67ppkw8wxxkrj76q68ljlhdbhar5hc89ffdsgr3zzdyk875"; depends=[httpuv httr jsonlite stringi]; }; - biocGraph = derive2 { name="biocGraph"; version="1.64.0"; sha256="1yy0bwvfa5b531jvmbiwrd4xg8cdvrgwr8l6bxasrh6yrbv8drml"; depends=[BiocGenerics geneplotter graph Rgraphviz]; }; - biocViews = derive2 { name="biocViews"; version="1.70.0"; sha256="0fpka47shrxcbc1k057f5zv79406daic0y34v8p5lsvxbgzh0m8b"; depends=[Biobase BiocManager graph RBGL RCurl RUnit XML]; }; - biocthis = derive2 { name="biocthis"; version="1.12.0"; sha256="0lxcsw70ib8wvkp3ii1l8vd4g2ddhj6g0x22dwcmwacr2myk3bg8"; depends=[BiocManager fs glue rlang styler usethis]; }; - biodb = derive2 { name="biodb"; version="1.10.0"; sha256="18w062s0wwdisl6a9a79in6h4052x3janinc5isip0x6p9g9d9bk"; depends=[BiocFileCache chk git2r jsonlite lgr lifecycle openssl plyr progress R6 rappdirs Rcpp RCurl RSQLite stringr testthat withr XML yaml]; }; - biodbChebi = derive2 { name="biodbChebi"; version="1.8.0"; sha256="0ic7dpjl0fxsqx51x8zjmf46ganx2imr64n93s79admwrcwbc33b"; depends=[biodb R6]; }; - biodbExpasy = derive2 { name="biodbExpasy"; version="1.6.0"; sha256="1y8f1iy3ircwxcwc6aymmi0q8yx91mh1c17y7drxp2b3pcbhgly1"; depends=[biodb chk R6 stringr]; }; - biodbHmdb = derive2 { name="biodbHmdb"; version="1.8.0"; sha256="1kymxi6kzv13gkvvhlfz8fkgac4ww05svxvy4zw6clwnh9gv3lwy"; depends=[biodb R6 Rcpp testthat zip]; }; - biodbKegg = derive2 { name="biodbKegg"; version="1.8.0"; sha256="07hvk0sab9m5df1y7v5ndkn7m4l24w6cy4bvyvx3445c1bljqwmf"; depends=[biodb chk lifecycle R6]; }; - biodbLipidmaps = derive2 { name="biodbLipidmaps"; version="1.8.0"; sha256="10zz8wri5pmz0329bygpg0a20yphsx04gwhv41hy5x0z86sx55xs"; depends=[biodb lifecycle R6]; }; - biodbMirbase = derive2 { name="biodbMirbase"; version="1.5.0"; sha256="17clip9l8as9pz390bqgj07jxp1rijis2f5hj53s6vqaqmiyz4il"; depends=[biodb chk R6 stringr]; }; - biodbNcbi = derive2 { name="biodbNcbi"; version="1.6.0"; sha256="1qkcpk81j6wzqvfa78sv01a51sgcgyfjdkwm4izgkb5qblwy17c5"; depends=[biodb chk R6 XML]; }; - biodbNci = derive2 { name="biodbNci"; version="1.6.0"; sha256="1djdfw3xks6wr20igrnj9ph8awrdnyxyiac3377wn3nc4sq87rax"; depends=[biodb chk R6 Rcpp testthat]; }; - biodbUniprot = derive2 { name="biodbUniprot"; version="1.8.0"; sha256="19jq0s3s2hpwnwxws5zx9d569djfrqf5npsw49fq1v9zx4g903g1"; depends=[biodb R6]; }; - biomaRt = derive2 { name="biomaRt"; version="2.58.2"; sha256="03hl64j7fknw4gzw9w653zzw5gdxyi7r95vxr5ksz0m3n9xdv124"; depends=[AnnotationDbi BiocFileCache digest httr progress rappdirs stringr XML xml2]; }; - biomformat = derive2 { name="biomformat"; version="1.30.0"; sha256="1ccnrz8rkg533kil3sc8wnjqsmiyrpqqmk7av7ls01avglcjdjq1"; depends=[jsonlite Matrix plyr rhdf5]; }; - biomvRCNS = derive2 { name="biomvRCNS"; version="1.42.2"; sha256="1imni8lpjzf53w2q34ql0j9rwq6drbzxvs0nhzf6s172iqym2hq3"; depends=[GenomicRanges Gviz IRanges mvtnorm]; }; - biosigner = derive2 { name="biosigner"; version="1.30.0"; sha256="1j3wkqvha6pzd6d3wm2q4lihn8p9ycw0wmddjqpnqvglb1x7c0f8"; depends=[Biobase e1071 MultiAssayExperiment MultiDataSet randomForest ropls SummarizedExperiment]; }; - biotmle = derive2 { name="biotmle"; version="1.26.0"; sha256="0h796sxv7fvwx9m8ikamf3bvaac7rimp33lv1j3ngsjifigdkvfy"; depends=[assertthat BiocGenerics BiocParallel dplyr drtmle ggplot2 ggsci limma S4Vectors SummarizedExperiment superheat tibble]; }; - biovizBase = derive2 { name="biovizBase"; version="1.50.0"; sha256="01hli49aq1fjjgpk465znq1ki0qi7nxg71pqg18fz6nblg3ny9z5"; depends=[AnnotationDbi AnnotationFilter BiocGenerics Biostrings dichromat ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Hmisc IRanges RColorBrewer rlang Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; - biscuiteer = derive2 { name="biscuiteer"; version="1.16.0"; sha256="1q90p14qj5plz6cbvwxq875y29in6jg7adyni5wd33pf9i4gsxzi"; depends=[Biobase BiocGenerics BiocParallel biscuiteerData bsseq data_table DelayedMatrixStats dmrseq GenomeInfoDb GenomicRanges gtools HDF5Array Homo_sapiens impute IRanges Matrix matrixStats Mus_musculus QDNAseq qualV R_utils readr Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; - blacksheepr = derive2 { name="blacksheepr"; version="1.16.0"; sha256="10a2nwks2kmdx8xpk1zbrmxvi4wsmdsyxkg4a45s6n67213qx4ir"; depends=[circlize ComplexHeatmap pasilla RColorBrewer SummarizedExperiment viridis]; }; - blima = derive2 { name="blima"; version="1.36.0"; sha256="15p2792sf1mh11vna5807cw9kki2v5bc57w8lchgkkv2fy7a5l3i"; depends=[beadarray Biobase BiocGenerics Rcpp]; }; - bluster = derive2 { name="bluster"; version="1.12.0"; sha256="16zkv567d39258syhfb215y04sq3pnfjh9pgbp5z85hcfpz4qmhc"; depends=[BiocNeighbors BiocParallel cluster igraph Matrix Rcpp S4Vectors]; }; - bnbc = derive2 { name="bnbc"; version="1.24.2"; sha256="0fv8a3v37y5bs9gvk95d2k1yp989sc99r57pbdysadnb463ss6gv"; depends=[BiocGenerics data_table EBImage GenomeInfoDb GenomicRanges HiCBricks IRanges matrixStats preprocessCore Rcpp rhdf5 S4Vectors SummarizedExperiment sva]; }; - bnem = derive2 { name="bnem"; version="1.10.0"; sha256="0wl5r6bxd315n1kdh1cjqvrmnxbvbjriq6n6djk43bvj5b7i8c5s"; depends=[affy binom Biobase CellNOptR cluster epiNEM flexclust graph limma matrixStats mnem RColorBrewer Rgraphviz rmarkdown snowfall sva vsn]; }; - borealis = derive2 { name="borealis"; version="1.6.0"; sha256="1432frd73ysjayppdql2ffaf5dwwvqm5sr3rd7dj824qpdi1g9a4"; depends=[Biobase bsseq cowplot doParallel dplyr DSS foreach gamlss gamlss_dist GenomicRanges ggplot2 plyr purrr R_utils rlang snow]; }; - brainflowprobes = derive2 { name="brainflowprobes"; version="1.16.0"; sha256="06gga72ns7h9c6mdbvbj8afpkyizg7maazriilvaq433h6s1pgqb"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 bumphunter cowplot derfinder derfinderPlot GenomicRanges GenomicState ggplot2 RColorBrewer]; }; - branchpointer = derive2 { name="branchpointer"; version="1.28.0"; sha256="104v99nnhkyfmnv5dalz4gimbx0z9xv8l9bwq1v8sf8m1fdlqz3k"; depends=[biomaRt Biostrings BSgenome_Hsapiens_UCSC_hg38 caret cowplot data_table gbm GenomeInfoDb GenomicRanges ggplot2 IRanges kernlab plyr rtracklayer S4Vectors stringr]; }; - breakpointR = derive2 { name="breakpointR"; version="1.20.0"; sha256="1jhgimybc2ib201k6vs5nfyi1whpkkzn7nj562yhz74208fx793a"; depends=[BiocGenerics breakpointRdata cowplot doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges Rsamtools S4Vectors]; }; - brendaDb = derive2 { name="brendaDb"; version="1.16.0"; sha256="1hsd66wz3frg4z423358mxj4d7nmhmsyjlqkh5q4gdsasr4wx88y"; depends=[BiocFileCache BiocParallel crayon dplyr magrittr purrr rappdirs Rcpp rlang stringr tibble tidyr]; }; - bsseq = derive2 { name="bsseq"; version="1.38.0"; sha256="0afpzr52mf2ab7gr9swdf6609787ymw8s8wksis0d4ap0y0wdgg0"; depends=[beachmat Biobase BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats GenomeInfoDb GenomicRanges gtools HDF5Array IRanges limma locfit permute R_utils Rcpp rhdf5 S4Vectors scales SummarizedExperiment]; }; - bugsigdbr = derive2 { name="bugsigdbr"; version="1.8.4"; sha256="03jwdkjq8cy9x2a6m805498wxgkmvz1c35bs5xykmr0cdd8kds53"; depends=[BiocFileCache]; }; - bumphunter = derive2 { name="bumphunter"; version="1.44.0"; sha256="0vnm0m9abf8478f7lair58vw1v4mxj8sbmrxcpf8622ygf2na4qc"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; }; - cBioPortalData = derive2 { name="cBioPortalData"; version="2.14.2"; sha256="1bb7p6bbizyq0ap39fc11vfqpgfrcj7xr6avjm09vydmafi8s0q6"; depends=[AnVIL BiocFileCache digest dplyr GenomeInfoDb GenomicRanges httr IRanges MultiAssayExperiment RaggedExperiment readr RTCGAToolbox S4Vectors SummarizedExperiment TCGAutils tibble tidyr]; }; - cTRAP = derive2 { name="cTRAP"; version="1.20.0"; sha256="0f0qdm1kih9vpz911ms23056vsg6ss9f6hkrvmw0sr1idcpzq92a"; depends=[AnnotationDbi AnnotationHub binr cowplot data_table dplyr DT fastmatch fgsea ggplot2 ggrepel highcharter htmltools httr limma pbapply purrr qs R_utils readxl reshape2 rhdf5 rlang scales shiny shinycssloaders tibble]; }; - cageminer = derive2 { name="cageminer"; version="1.8.0"; sha256="1bd13lwxwp8qj86bg3njcsryl2zz83xr8kmph189z6wypi606zyw"; depends=[BioNERO GenomeInfoDb GenomicRanges ggbio ggplot2 ggtext IRanges reshape2 rlang]; }; - calm = derive2 { name="calm"; version="1.16.0"; sha256="130288ihhf2grmpzrizhrhspq5y9m82f3yji6fhvrh2kbczjr7fv"; depends=[mgcv]; }; - canceR = derive2 { name="canceR"; version="1.36.7"; sha256="04vifanjabys6cqm7ln4n4szmqzs36kga75frwazbkc2a51g1lnm"; depends=[Biobase cBioPortalData circlize dplyr Formula geNetClassifier GSEABase phenoTest plyr R_methodsS3 R_oo rpart RUnit survival tidyr tkrplot]; }; - cancerclass = derive2 { name="cancerclass"; version="1.46.0"; sha256="0v1js5nsgmz6sxl6nbp4hhx12z84xps9kh03xxp0rbhl9g9kjq8f"; depends=[binom Biobase]; }; - cardelino = derive2 { name="cardelino"; version="1.4.0"; sha256="0y4d3db01jwahz01hx3dswc4gg0x5k7325v4n1illgw3ddj2mvgn"; depends=[combinat GenomeInfoDb GenomicRanges ggplot2 ggtree Matrix matrixStats pheatmap S4Vectors snpStats VariantAnnotation vcfR]; }; - casper = derive2 { name="casper"; version="2.36.0"; sha256="0csh68x4qbhzsszlr2rb23q9a1mzsibqm9ljbglc5asy1m316601"; depends=[Biobase BiocGenerics coda EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; }; - categoryCompare = derive2 { name="categoryCompare"; version="1.46.0"; sha256="03daa0kqw4fwg8rv0l87qvw0324wa00jzp5hc8x4pqpw1flg2g84"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCy3]; }; - cbaf = derive2 { name="cbaf"; version="1.24.0"; sha256="1z68iv8322b9xrqcnvjg1yapnwwsis3zbk48ax5br0avlrwgv6hi"; depends=[BiocFileCache cBioPortalData genefilter gplots openxlsx RColorBrewer]; }; - cbpManager = derive2 { name="cbpManager"; version="1.10.0"; sha256="1157gaqyrqsw31p34ylrr4j2hla2q5xyswv70zy80ij71ykwps7a"; depends=[basilisk dplyr DT htmltools jsonlite magrittr markdown plyr rapportools reticulate rintrojs rlang shiny shinyBS shinycssloaders shinydashboard vroom]; }; - ccImpute = derive2 { name="ccImpute"; version="1.4.0"; sha256="0v27y9i6872p11gwg4pq0xzdd66pk7wsc21ig8n12w7lq898nwhj"; depends=[BiocParallel matrixStats Rcpp RcppEigen SIMLR]; }; - ccfindR = derive2 { name="ccfindR"; version="1.22.0"; sha256="1qsgpsrxhacg3sm9afi2x0d0aadvwibzjh40qkwgmq3smfv9an01"; depends=[ape gtools irlba Matrix RColorBrewer Rcpp RcppEigen Rdpack Rmpi Rtsne S4Vectors SingleCellExperiment SummarizedExperiment]; }; - ccmap = derive2 { name="ccmap"; version="1.28.0"; sha256="0fmb5d9mqwh227sw3skksfqx7cp6bfwnslhffh8v9byjz99vkcli"; depends=[AnnotationDbi BiocManager ccdata data_table doParallel foreach lsa xgboost]; }; - ccrepe = derive2 { name="ccrepe"; version="1.38.1"; sha256="1hkhxhzbry612p0lc3blmxnx3cb70x8473x6ghwgi7v71f01agbq"; depends=[infotheo]; }; - ceRNAnetsim = derive2 { name="ceRNAnetsim"; version="1.14.1"; sha256="13ng9h1q30qm62n2q4yh8lghxjyv34xz5pgwi1bai7ib4i5b7wks"; depends=[dplyr furrr future ggplot2 ggraph igraph purrr rlang tibble tidygraph tidyr]; }; - celaref = derive2 { name="celaref"; version="1.20.0"; sha256="1wjyh98y4n24gaw9g9f988d51239imqf2jh7bycyl1yi8r57r8ds"; depends=[BiocGenerics DelayedArray dplyr ggplot2 magrittr MAST Matrix readr rlang S4Vectors SummarizedExperiment tibble]; }; - celda = derive2 { name="celda"; version="1.18.1"; sha256="1wvqxp9fwd0jfjwnhjzmmw2yzgz2gzlm2hnij6xylz41s7al6gdp"; depends=[circlize ComplexHeatmap data_table dbscan DelayedArray digest doParallel enrichR foreach ggplot2 ggrepel gridExtra gtable Matrix matrixStats MCMCprecision plyr RColorBrewer Rcpp RcppEigen reshape2 Rtsne S4Vectors scales scater scran SingleCellExperiment stringr SummarizedExperiment uwot withr]; }; - cellHTS2 = derive2 { name="cellHTS2"; version="2.66.0"; sha256="1cw9k0p67fjcjaykfa9s6fhp07mrliyyzhl9ac3874kvmi2qiavj"; depends=[Biobase BiocGenerics Category genefilter GSEABase hwriter locfit RColorBrewer splots vsn]; }; - cellbaseR = derive2 { name="cellbaseR"; version="1.26.0"; sha256="16jypif8cnx03m206n1am52avwmfdnbplygxlainn3wqxgm5gr9y"; depends=[BiocParallel data_table doParallel foreach httr jsonlite pbapply R_utils Rsamtools tidyr]; }; - cellity = derive2 { name="cellity"; version="1.30.0"; sha256="1wdc3f93cwgqrln39c8c2nyi77kh8qrzis4qb8bxldkhf0s6vlb5"; depends=[AnnotationDbi e1071 ggplot2 mvoutlier org_Hs_eg_db org_Mm_eg_db robustbase topGO]; }; - cellmigRation = derive2 { name="cellmigRation"; version="1.10.0"; sha256="0l7awcn1bjfp23f9si2f1wkyrla0zk9h8qsg8dx3jqd5wgdrivcm"; depends=[doParallel FactoMineR FME foreach Hmisc matrixStats reshape2 sp SpatialTools tiff vioplot]; }; - cellscape = derive2 { name="cellscape"; version="1.26.0"; sha256="1556acixb5bpcba8shhfkyk2074sm1gdzw24v93nmqns8zkx00jw"; depends=[dplyr gtools htmlwidgets jsonlite reshape2 stringr]; }; - cellxgenedp = derive2 { name="cellxgenedp"; version="1.6.1"; sha256="0f9dzlw0mgv6chmxq348n91ylbscfqv4hx4q49bgpinsc3yp1vdj"; depends=[curl dplyr DT httr jsonlite rjsoncons shiny]; }; - censcyt = derive2 { name="censcyt"; version="1.10.0"; sha256="0wfxvppvk8zk6dmk57mgckkh37b56whfcykdgmjkyhzqkimwflj0"; depends=[BiocParallel broom_mixed diffcyt dirmult dplyr edgeR fitdistrplus lme4 magrittr MASS mice multcomp purrr rlang S4Vectors stringr SummarizedExperiment survival tibble tidyr]; }; - cfDNAPro = derive2 { name="cfDNAPro"; version="1.8.0"; sha256="0zqqchzv9izsdnca5i8df9ccs5wsfmqvcd2mfh8psq66fxmj9kzj"; depends=[BiocGenerics BSgenome_Hsapiens_NCBI_GRCh38 BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr plyranges quantmod rlang Rsamtools stringr tibble]; }; - cfTools = derive2 { name="cfTools"; version="1.2.0"; sha256="11nj6g2qxxr6s11432wsna3ma2k9dyp7w76iamj0z80wnbvmicfz"; depends=[basilisk BH cfToolsData GenomicRanges R_utils Rcpp]; }; - cfdnakit = derive2 { name="cfdnakit"; version="1.0.0"; sha256="0p74f274hk3w1y5rx06sdq36wddzd6wmhyla4l29fb87wmpfhidk"; depends=[Biobase dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr PSCBS QDNAseq rlang Rsamtools S4Vectors]; }; - cghMCR = derive2 { name="cghMCR"; version="1.60.0"; sha256="0isblsgxaj7751lm8fsq94nzp03yhwycfmdrarb6lz9kwk8b177r"; depends=[BiocGenerics CNTools DNAcopy limma]; }; - chihaya = derive2 { name="chihaya"; version="1.2.0"; sha256="0mg27phk4z8kdldjsi8c32p67i3dpbk332agljv33a89672z54zi"; depends=[DelayedArray HDF5Array Matrix Rcpp rhdf5 Rhdf5lib]; }; - chimeraviz = derive2 { name="chimeraviz"; version="1.28.0"; sha256="08w3dd1dlvkvdcgykh8hf95g405q6095cmyg6nhmml4rahaf08fz"; depends=[AnnotationDbi AnnotationFilter BiocStyle Biostrings checkmate data_table dplyr DT ensembldb GenomeInfoDb GenomicAlignments GenomicRanges graph gtools Gviz IRanges magick org_Hs_eg_db org_Mm_eg_db plyr RCircos RColorBrewer Rgraphviz rmarkdown Rsamtools S4Vectors]; }; - chipenrich = derive2 { name="chipenrich"; version="2.26.0"; sha256="11kmv963x88ngarcsxw6pc42nhwiy4147kjl14d9qn9zcpky40d3"; depends=[AnnotationDbi BiocGenerics chipenrich_data GenomeInfoDb GenomicRanges IRanges lattice latticeExtra MASS mgcv org_Dm_eg_db org_Dr_eg_db org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db plyr rms rtracklayer S4Vectors stringr]; }; - chipseq = derive2 { name="chipseq"; version="1.52.0"; sha256="1fw99xnll4jwdmp49jh59zxcbp3qs2850pjdg403sv4cg1bgfdyi"; depends=[BiocGenerics GenomicRanges IRanges lattice S4Vectors ShortRead]; }; - chopsticks = derive2 { name="chopsticks"; version="1.68.0"; sha256="02w8w28lwn5qxyiaf9aw850b46amw8413bbhy7nhfa1h17429q2z"; depends=[survival]; }; - chromDraw = derive2 { name="chromDraw"; version="2.32.0"; sha256="16697g01gn79jq5b42fcxmscwkfx2p90zxpzw0akfz7dxx4izp3f"; depends=[GenomicRanges Rcpp]; }; - chromPlot = derive2 { name="chromPlot"; version="1.30.0"; sha256="1xqqil19igqr5wymhmkh2m2iyj98k5x8k4k1s218rzx39yfamq7y"; depends=[biomaRt GenomicRanges]; }; - chromVAR = derive2 { name="chromVAR"; version="1.24.0"; sha256="1vy650625b9b2dgnkgh5h0kw5bkdvfin133091asf1nw4jgnn1vx"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicRanges ggplot2 IRanges Matrix miniUI nabor plotly RColorBrewer Rcpp RcppArmadillo Rsamtools Rtsne S4Vectors shiny SummarizedExperiment TFBSTools]; }; - chromstaR = derive2 { name="chromstaR"; version="1.28.0"; sha256="1yykcqxp8y7by4jgh6dfl25m0pnghj36qy21990n2sdfv1kpg2x6"; depends=[bamsignals BiocGenerics chromstaRData doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges mvtnorm reshape2 Rsamtools S4Vectors]; }; - cicero = derive2 { name="cicero"; version="1.20.0"; sha256="19vn31w74r45pq5m9pn5db1sz1qg757mghzzs933cdssnqf4m6y5"; depends=[assertthat Biobase BiocGenerics data_table dplyr FNN GenomicRanges ggplot2 glasso Gviz igraph IRanges Matrix monocle plyr reshape2 S4Vectors stringi stringr tibble tidyr VGAM]; }; - circRNAprofiler = derive2 { name="circRNAprofiler"; version="1.16.0"; sha256="098fbrszph5cnh4n9zjhj92sg1bi6h6k57wm2vlaqkq0nab63r63"; depends=[AnnotationHub Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DESeq2 dplyr edgeR GenomeInfoDb GenomicRanges ggplot2 gwascat IRanges magrittr R_utils readr reshape2 rlang rtracklayer S4Vectors seqinr stringi stringr universalmotif]; }; - cisPath = derive2 { name="cisPath"; version="1.42.0"; sha256="00xnaravzyc8lh94iapyy9g5fc5w9yzf8bgz8cjxcy0js9996h8n"; depends=[]; }; - cleanUpdTSeq = derive2 { name="cleanUpdTSeq"; version="1.40.0"; sha256="0yhbzzx8i1pilrv970prjrnjfb38vwygyxqarli81v6rmn344ps9"; depends=[Biostrings BSgenome BSgenome_Drerio_UCSC_danRer7 e1071 GenomeInfoDb GenomicRanges IRanges S4Vectors seqinr stringr]; }; - cleaver = derive2 { name="cleaver"; version="1.40.0"; sha256="0r1a0rncxnrfmj81ghz3jhj3r2lyhilcr1c33z9igdlbgqh7whak"; depends=[Biostrings IRanges S4Vectors]; }; - clevRvis = derive2 { name="clevRvis"; version="1.2.0"; sha256="0p7m7hc21qmicm33g8wr8gdmh0b0fm87xa6srirvsmkbbblly35l"; depends=[colorspace colourpicker cowplot dplyr DT ggiraph ggnewscale ggplot2 ggraph htmlwidgets igraph magrittr patchwork purrr R_utils readr readxl shiny shinycssloaders shinydashboard shinyhelper shinyWidgets tibble]; }; - cliProfiler = derive2 { name="cliProfiler"; version="1.8.0"; sha256="0zv7y5cdv409cimc7n6v6h8i2pgy2pmr364vvlv0pgvpld3239yl"; depends=[Biostrings BSgenome dplyr GenomicRanges ggplot2 rtracklayer S4Vectors]; }; - clippda = derive2 { name="clippda"; version="1.52.0"; sha256="11pxmsspiyvych0qzvmjkcvk6pqbh2pf0pvaghcdbs5480gn9awg"; depends=[Biobase lattice limma rgl scatterplot3d statmod]; }; - clipper = derive2 { name="clipper"; version="1.42.0"; sha256="05hhvy0sv7l69laj4ah5vg56inzf2qb4lfc7hd71ifsw7cwyx8ql"; depends=[Biobase corpcor graph gRbase igraph KEGGgraph Matrix qpgraph Rcpp]; }; - cliqueMS = derive2 { name="cliqueMS"; version="1.16.0"; sha256="1829i6vqplqyvibb7x6ahb7xk0z2s8amivjldnvr17d7hpggmqma"; depends=[BH igraph matrixStats MSnbase Rcpp RcppArmadillo xcms]; }; - clst = derive2 { name="clst"; version="1.50.0"; sha256="0lbjjkcsrz6h2akr1022v0mv1ryywba57hg84yzdzmv389r0jj42"; depends=[lattice ROC]; }; - clstutils = derive2 { name="clstutils"; version="1.50.0"; sha256="0wl1s23hmj7v3247lry9kp124kajn69b0dm3qm9fr7imlyadn666"; depends=[ape clst lattice rjson RSQLite]; }; - clustComp = derive2 { name="clustComp"; version="1.30.0"; sha256="1jwx8k18qgyyadda89crc66b9sjq7yr2f0ym9p5s5cpc48dlyg55"; depends=[sm]; }; - clusterExperiment = derive2 { name="clusterExperiment"; version="2.22.0"; sha256="1qnxrdpp75m342q4chwaig413l52giz1h7nd4p9y4b472dqx9hh4"; depends=[ape BiocGenerics BiocSingular cluster DelayedArray edgeR HDF5Array kernlab limma locfdr Matrix matrixStats mbkmeans NMF phylobase pracma RColorBrewer Rcpp S4Vectors scales SingleCellExperiment stringr SummarizedExperiment zinbwave]; }; - clusterProfiler = derive2 { name="clusterProfiler"; version="4.10.1"; sha256="1jwi9029dy7ga4hv75grib7wdaghslwh4qk5awhgw3192a0qcixf"; depends=[AnnotationDbi DOSE downloader dplyr enrichplot GO_db GOSemSim gson httr igraph magrittr plyr qvalue rlang tidyr yulab_utils]; }; - clusterSeq = derive2 { name="clusterSeq"; version="1.26.0"; sha256="0fl9ycd10rbghgxq7gnfwy9i3vcxndx8grhpvk46zlxb2spa5lvf"; depends=[baySeq BiocGenerics BiocParallel]; }; - clusterStab = derive2 { name="clusterStab"; version="1.74.0"; sha256="10xk9654zhan2ssbj5r147z4ic2jl29h5jnhc711w4fg8xrrgpa8"; depends=[Biobase]; }; - clustifyr = derive2 { name="clustifyr"; version="1.14.0"; sha256="0cfpjwaab7cswbi7wk58hn3wa9xh84l1sdi3jjkrx7hpm4q4kspn"; depends=[cowplot dplyr entropy fgsea ggplot2 httr Matrix matrixStats proxy rlang S4Vectors scales SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; }; - cmapR = derive2 { name="cmapR"; version="1.14.0"; sha256="02nwmgzb1765z79mnp0fp6gdfl42iglhw5xd145incvn7zhf9a4m"; depends=[data_table flowCore matrixStats rhdf5 SummarizedExperiment]; }; - cn_farms = derive2 { name="cn.farms"; version="1.50.0"; sha256="1banis7clrcvv73n0idjay9izmnr1p5qq5ggq26kwmwx3knlfpzr"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; }; - cn_mops = derive2 { name="cn.mops"; version="1.48.0"; sha256="0ygzvxlklfhmq6wpwzcjrwdyyskb2hgm9icpl7ngzjk2s9p18knf"; depends=[Biobase BiocGenerics exomeCopy GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; - cnvGSA = derive2 { name="cnvGSA"; version="1.46.0"; sha256="1knx58gc3r1j7ixzc4jf76hg52ssxzjinsjhmkpimdcmq7azdv3s"; depends=[brglm doParallel foreach GenomicRanges splitstackshape]; }; - coGPS = derive2 { name="coGPS"; version="1.46.0"; sha256="0lhp3a8nrnm3k7gmxfbnkvqsnnkky0h6g1842nnh2agf2gc7xmx7"; depends=[]; }; - coMET = derive2 { name="coMET"; version="1.34.0"; sha256="1pkhnfcvrbj9y88qbbvly4arbz22x8zkx0jsvsmn5klg4xp11fdz"; depends=[biomaRt corrplot GenomicRanges gridExtra Gviz hash IRanges psych rtracklayer S4Vectors]; }; - coMethDMR = derive2 { name="coMethDMR"; version="1.6.0"; sha256="1pmshw18iyvgxmzhhid6276adhjw5hwfhladcd207qg927rnvlm5"; depends=[AnnotationHub BiocParallel bumphunter ExperimentHub GenomicRanges IRanges lmerTest]; }; - coRdon = derive2 { name="coRdon"; version="1.20.0"; sha256="18q39xxfbfak6qx3vwpksrngkimppvarck98yhp4bv0mwpvcsg0b"; depends=[Biobase Biostrings data_table dplyr ggplot2 purrr stringr]; }; - codelink = derive2 { name="codelink"; version="1.70.0"; sha256="145psgig0nvgq4zjpdv5m9rqlwn3vva06vznzymwvdcipcb9vllm"; depends=[annotate Biobase BiocGenerics limma]; }; - cogena = derive2 { name="cogena"; version="1.36.0"; sha256="0i0bglq3dkrprxm3yw0np65gy0mk50wsrzm0lpglfin9hyws3hzf"; depends=[amap apcluster Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots kohonen mclust reshape2 stringr tibble tidyr]; }; - cogeqc = derive2 { name="cogeqc"; version="1.6.2"; sha256="11hysp7nwgw03rr4kpmfg0ma150aiapkj1rrjvszfdj8b9vvywmx"; depends=[Biostrings ggbeeswarm ggplot2 ggtree igraph jsonlite patchwork reshape2 rlang scales]; }; - cola = derive2 { name="cola"; version="2.8.0"; sha256="0wrh606i0d372wi809fg7vpz9v7zn3pvqc551lnxyafczl6j5hy4"; depends=[BiocGenerics brew circlize clue cluster ComplexHeatmap crayon digest doParallel doRNG eulerr foreach GetoptLong GlobalOptions httr impute irlba knitr markdown matrixStats mclust microbenchmark png RColorBrewer Rcpp skmeans xml2]; }; - comapr = derive2 { name="comapr"; version="1.6.1"; sha256="13kiaa4r8i27mrxsssw075cscsvvak9j4l5cnqw66h1x4ca1f45c"; depends=[BiocParallel circlize dplyr foreach GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz IRanges Matrix plotly plyr RColorBrewer reshape2 rlang S4Vectors scales SummarizedExperiment tidyr]; }; - combi = derive2 { name="combi"; version="1.14.0"; sha256="1qhmfadhsi62k4mhwj16xx7pqdpgybmm70vpzfw146mwi2fwi0bs"; depends=[alabama BB Biobase cobs DBI ggplot2 limma Matrix nleqslv phyloseq reshape2 SummarizedExperiment tensor vegan]; }; - compEpiTools = derive2 { name="compEpiTools"; version="1.36.0"; sha256="19dvbpqcb4rwhw1hh4g18zbw1s72xplhph8lbwvim18h9wrw292f"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges GO_db gplots IRanges methylPipe Rsamtools S4Vectors topGO XVector]; }; - compSPOT = derive2 { name="compSPOT"; version="1.0.0"; sha256="13qsqvj4ijxr8xlg0lbj187g2vkwip9yj4g6mb1hzlng6d4ja4bb"; depends=[data_table ggplot2 ggpubr gridExtra magrittr plotly]; }; - compcodeR = derive2 { name="compcodeR"; version="1.38.0"; sha256="011y57ly6c72p8ch1384d6v30mnihr7si0sbk86v0ii1ymmlbva3"; depends=[ape caTools edgeR ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS matrixStats modeest phylolm rmarkdown ROCR shiny shinydashboard sm stringr vioplot]; }; - concordexR = derive2 { name="concordexR"; version="1.2.0"; sha256="06yp4q4kllprbjvqk6jcxgmc6rmhipgqxkk5ghrkz0fn0x7wcsdw"; depends=[BiocParallel cli DelayedArray ggplot2 Matrix pheatmap rlang scales]; }; - condiments = derive2 { name="condiments"; version="1.10.0"; sha256="1jx3gfy5pcpc8wimamvpw7zbjiyzzcbfkqlqn9rjs63lg04gqrm0"; depends=[BiocParallel distinct dplyr Ecume igraph magrittr matrixStats mgcv pbapply RANN SingleCellExperiment slingshot SummarizedExperiment TrajectoryUtils]; }; - consICA = derive2 { name="consICA"; version="2.0.0"; sha256="0xi21ww9vh1m8b6agk2fnyvdj3aks1pv68rx4j512736rrgmhq50"; depends=[BiocParallel fastICA ggplot2 GO_db graph org_Hs_eg_db pheatmap Rfast sm SummarizedExperiment survival topGO]; }; - consensus = derive2 { name="consensus"; version="1.20.0"; sha256="1gcm5ghvjq41s5v1iazvyal73agnjw6wlhvq4q6n9bdmc6p72xbl"; depends=[gplots matrixStats RColorBrewer]; }; - consensusDE = derive2 { name="consensusDE"; version="1.20.0"; sha256="00y5iizshr8j3xjaza6gcnihdhq4174kzc6008zy10cc1swjyrg4"; depends=[airway AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings data_table dendextend DESeq2 EDASeq edgeR EnsDb_Hsapiens_v86 ensembldb GenomicAlignments GenomicFeatures limma org_Hs_eg_db pcaMethods RColorBrewer Rsamtools RUVSeq S4Vectors SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm3_ensGene]; }; - consensusOV = derive2 { name="consensusOV"; version="1.24.0"; sha256="0dsxxxi8ig3alx6ggfdj0xycc4dx796c2hranar1hx7xaxfz5yl3"; depends=[Biobase gdata genefu GSVA limma matrixStats randomForest]; }; - consensusSeekeR = derive2 { name="consensusSeekeR"; version="1.30.0"; sha256="0ddv5rwb4jwvykwpv8zdmbvw88c6k9hwzf8csj5ylywkr5b6z8nf"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors stringr]; }; - contiBAIT = derive2 { name="contiBAIT"; version="1.30.0"; sha256="1asyfx0mbg0pli2g533xmlppfw0s0f1y4vf2rfrnai4chsh1rh0k"; depends=[BH BiocGenerics BiocParallel clue cluster colorspace data_table diagram DNAcopy exomeCopy GenomicAlignments GenomicFiles GenomicRanges ggplot2 gplots gtools IRanges Rcpp reshape2 Rsamtools rtracklayer S4Vectors TSP]; }; - conumee = derive2 { name="conumee"; version="1.36.0"; sha256="1wn80253wpmvx09203nm2azfkfqz46g79pj1b38lc4nd7gzhlnp7"; depends=[DNAcopy GenomeInfoDb GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest IRanges minfi rtracklayer]; }; - convert = derive2 { name="convert"; version="1.78.0"; sha256="1sx4b3winpal84i689nkv1l3xhqzc2qlhwsdkkxhvkyrz7q64dcj"; depends=[Biobase limma marray]; }; - copa = derive2 { name="copa"; version="1.70.0"; sha256="05063is251m505i3pqfz4srh5hdchkmb8r4nd3f2ahdznb6hbwjf"; depends=[Biobase]; }; - corral = derive2 { name="corral"; version="1.12.0"; sha256="0j4krd9rafx373c620700154dh07r8ncckxqxa1nzkyrgw1zspbc"; depends=[ggplot2 ggthemes gridExtra irlba Matrix MultiAssayExperiment pals reshape2 SingleCellExperiment SummarizedExperiment transport]; }; - coseq = derive2 { name="coseq"; version="1.26.0"; sha256="1f850bzykgxc3zdpd8y0wll2i1kmf6rmx7nl7hqa6nhva6g18gd8"; depends=[BiocParallel capushe compositions corrplot DESeq2 e1071 edgeR ggplot2 HTSCluster HTSFilter mvtnorm Rmixmod S4Vectors scales SummarizedExperiment]; }; - cosmiq = derive2 { name="cosmiq"; version="1.36.0"; sha256="1mrczwiy1nbqv2qcvc7vmh7mfzg3ywdy4cfb7nmblm0rjd9rs7g9"; depends=[faahKO MassSpecWavelet pracma Rcpp xcms]; }; - cosmosR = derive2 { name="cosmosR"; version="1.10.0"; sha256="0y1qhasidhg0fywm65jn1qy1786kj45cl8zvgz5vbzdg8anbz5af"; depends=[CARNIVAL decoupleR dorothea dplyr GSEABase igraph progress purrr rlang stringr visNetwork]; }; - countsimQC = derive2 { name="countsimQC"; version="1.20.0"; sha256="02lswhazdgdyrn0vvv9i338av873l0a3ky8bjxm74a2s5aifmw3b"; depends=[caTools DESeq2 dplyr DT edgeR genefilter GenomeInfoDbData ggplot2 ragg randtests rmarkdown SummarizedExperiment tidyr]; }; - covEB = derive2 { name="covEB"; version="1.28.0"; sha256="0a04h3xbdqqszzsa30yrifrgxn8r6jjvb0hs7r4kvxjg3c6nmwfk"; depends=[Biobase gsl igraph LaplacesDemon Matrix mvtnorm]; }; - covRNA = derive2 { name="covRNA"; version="1.28.0"; sha256="1rkla4i86dwaqkjax2p1p6wlg1mxdpxvad097x1fa7dm5g2r3w04"; depends=[ade4 Biobase genefilter]; }; - cpvSNP = derive2 { name="cpvSNP"; version="1.34.0"; sha256="1bvc87rspc1p240m1cc6rqgdpk4hpbk3hgz6l5s95srmw1gmzg48"; depends=[BiocParallel corpcor GenomicFeatures ggplot2 GSEABase plyr]; }; - cqn = derive2 { name="cqn"; version="1.48.0"; sha256="0q5nf5a3yiii8r449dblckfhzi9gcxxc11sswlqxd5skbgw53yf8"; depends=[mclust nor1mix preprocessCore quantreg]; }; - crisprBase = derive2 { name="crisprBase"; version="1.6.0"; sha256="1j6rrslqvjbnz8i4c21as5is6l2q12p8i93yzs371qfwhq1cydw0"; depends=[BiocGenerics Biostrings GenomicRanges IRanges S4Vectors stringr]; }; - crisprBowtie = derive2 { name="crisprBowtie"; version="1.6.0"; sha256="1rh25h9ckyrm8jfxb5pmhaqhldkhdkgfv8c74ckj0q9sqlrq3mfa"; depends=[BiocGenerics Biostrings BSgenome crisprBase GenomeInfoDb GenomicRanges IRanges Rbowtie readr stringr]; }; - crisprBwa = derive2 { name="crisprBwa"; version="1.6.0"; sha256="19c9g233ymms085sx6v77m89rfm6g0nzarr7pgj4i9p7y5n3cj29"; depends=[BiocGenerics BSgenome crisprBase GenomeInfoDb Rbwa readr stringr]; }; - crisprDesign = derive2 { name="crisprDesign"; version="1.4.0"; sha256="1864ciggilcpxp3qi5b6hqfdj9l0w3r3q2n991gx4dmifvj601cj"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome crisprBase crisprBowtie crisprScore GenomeInfoDb GenomicFeatures GenomicRanges IRanges Matrix MatrixGenerics rtracklayer S4Vectors VariantAnnotation]; }; - crisprScore = derive2 { name="crisprScore"; version="1.6.0"; sha256="0a1qdjgy9j5dl5j5g15mjik3a9p42jqk00i8s342mghcrk44r9yy"; depends=[basilisk basilisk_utils BiocGenerics Biostrings crisprScoreData IRanges randomForest reticulate stringr XVector]; }; - crisprVerse = derive2 { name="crisprVerse"; version="1.4.0"; sha256="1cbqj7vnv3qy6w5g9h9fcfi5fnff2zyji2v2i1rc4nfbw1pdy8cv"; depends=[BiocManager cli crisprBase crisprBowtie crisprDesign crisprScore crisprScoreData crisprViz rlang]; }; - crisprViz = derive2 { name="crisprViz"; version="1.4.0"; sha256="17lkam2b5j8waf81y5jylj4s4ydswhkkzrjvrggw6bgjkw1wg3y7"; depends=[BiocGenerics Biostrings BSgenome crisprBase crisprDesign GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges S4Vectors]; }; - crlmm = derive2 { name="crlmm"; version="1.60.0"; sha256="1pw7v4z9x002nfr816nqwgk8rgifrdmwg1d6x7rb5j66kcb1sbkj"; depends=[affyio beanplot Biobase BiocGenerics ellipse ff foreach illuminaio lattice limma matrixStats mvtnorm oligoClasses preprocessCore RcppEigen VGAM]; }; - crossmeta = derive2 { name="crossmeta"; version="1.28.0"; sha256="18q6v0bhxhmd05h7w9rg3gp5226hy5xw0na93fsvgdi01vmm6zmx"; depends=[affxparser affy AnnotationDbi Biobase BiocGenerics BiocManager data_table DBI DT edgeR fdrtool GEOquery limma matrixStats metaMA miniUI oligo RCurl reader readxl RSQLite shiny shinyBS shinyjs shinypanel shinyWidgets stringr sva tibble XML]; }; - csaw = derive2 { name="csaw"; version="1.36.1"; sha256="02sabpma6k87kzlrl4msh7l672bgbswvvlyr0nqmpw419h3znr7z"; depends=[BiocGenerics BiocParallel edgeR GenomeInfoDb GenomicRanges IRanges limma Matrix metapod Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; }; - csdR = derive2 { name="csdR"; version="1.8.0"; sha256="1rp40fj7mpxvy2lm76vsfpjacmlrz4h2viqkbkfz6mq5v6vw6kvh"; depends=[glue matrixStats Rcpp RhpcBLASctl WGCNA]; }; - ctc = derive2 { name="ctc"; version="1.76.0"; sha256="10a83rr0qhnzdhvlbyn0y690hxnl8q86z47dpimr6sq41w463im3"; depends=[amap]; }; - ctsGE = derive2 { name="ctsGE"; version="1.28.0"; sha256="1g1m87piqllylradccv8ggqzbcha4jbmwlllgfv3n0w70iil5297"; depends=[ccaPP ggplot2 limma reshape2 shiny stringr]; }; - cummeRbund = derive2 { name="cummeRbund"; version="2.44.0"; sha256="1a5x3jzagd1a385yk1brs4say02r0l21qqjak4cl6fsv8ihhy05s"; depends=[Biobase BiocGenerics fastcluster ggplot2 Gviz plyr reshape2 RSQLite rtracklayer S4Vectors]; }; - customCMPdb = derive2 { name="customCMPdb"; version="1.12.0"; sha256="15dk28w5z00z6bycy264b35jh29195hhxrab01qcrjdyjjvxixs7"; depends=[AnnotationHub BiocFileCache ChemmineR rappdirs RSQLite XML]; }; - customProDB = derive2 { name="customProDB"; version="1.42.1"; sha256="1z2i7cxh88hsz54ijng4il0yc8rwbhf083sni4n3xg5238s9rgi8"; depends=[AhoCorasickTrie AnnotationDbi biomaRt Biostrings DBI GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr RCurl Rsamtools RSQLite rtracklayer S4Vectors stringr VariantAnnotation]; }; - cyanoFilter = derive2 { name="cyanoFilter"; version="1.10.0"; sha256="08lx2cwybpa07ds9klwp5sjf9gd06v8d5g9xcm5r7bisj3s8h19y"; depends=[Biobase cytometree flowClust flowCore flowDensity GGally ggplot2 mrfDepth]; }; - cycle = derive2 { name="cycle"; version="1.56.0"; sha256="0h30bv2gwpx04gp2wzifbqdf6s1qck3lhrs58rv3ak0q2frqk3yn"; depends=[Biobase Mfuzz]; }; - cydar = derive2 { name="cydar"; version="1.26.0"; sha256="01g3bs7hbnjlvsg3h65bwr1vzx7azkyq9w0b0ww4bmlllgwy2qfs"; depends=[Biobase BiocGenerics BiocNeighbors BiocParallel flowCore Rcpp S4Vectors shiny SingleCellExperiment SummarizedExperiment viridis]; }; - cytoKernel = derive2 { name="cytoKernel"; version="1.8.0"; sha256="18h696rdkny9n903nk580knq3sca4ih4v6phszy1jdmjmkliknc1"; depends=[ashr BiocParallel circlize ComplexHeatmap data_table dplyr magrittr Rcpp rlang S4Vectors SummarizedExperiment]; }; - cytoMEM = derive2 { name="cytoMEM"; version="1.6.0"; sha256="0fq8wjjrr2mlpsb4bd2r1m1c2whm5ryjlfsm8s27hy73m2j3xg5y"; depends=[flowCore gplots matrixStats]; }; - cytofQC = derive2 { name="cytofQC"; version="1.2.0"; sha256="11xhplp1r7g93j1mwahsy50q0iaw8x16h4w5r4knxylblsxb5wix"; depends=[CATALYST e1071 EZtune flowCore gbm ggplot2 hrbrthemes matrixStats randomForest rmarkdown S4Vectors SingleCellExperiment ssc SummarizedExperiment]; }; - cytolib = derive2 { name="cytolib"; version="2.14.1"; sha256="1kagik93ddcl3m1i2bqzzlh18lbxywfn3pxmp47p45kayzxzldrf"; depends=[BH Rhdf5lib RProtoBufLib]; }; - cytomapper = derive2 { name="cytomapper"; version="1.14.0"; sha256="0fz1wjhyhxb8yhrzwr03dnb7hybx1bf4prd3yixp4qi1ac2s4pp9"; depends=[BiocParallel DelayedArray EBImage ggbeeswarm ggplot2 HDF5Array matrixStats nnls raster RColorBrewer rhdf5 S4Vectors shiny shinydashboard SingleCellExperiment SpatialExperiment SummarizedExperiment svglite svgPanZoom viridis]; }; - cytoviewer = derive2 { name="cytoviewer"; version="1.2.0"; sha256="0vk7fj3qm0pslb8l80nbqzh7liyg7vmv35wqr94hvq230q92j958"; depends=[archive colourpicker cytomapper EBImage RColorBrewer S4Vectors shiny shinycssloaders shinydashboard SingleCellExperiment SummarizedExperiment svglite svgPanZoom viridis]; }; - dStruct = derive2 { name="dStruct"; version="1.8.0"; sha256="0a2blaswj9y5ba2kwa49194dqbpvn04l7ll6pckb4l6xx8xi2dr8"; depends=[ggplot2 IRanges purrr reshape2 rlang S4Vectors zoo]; }; - daMA = derive2 { name="daMA"; version="1.74.0"; sha256="1ckk8h6adylaxq6bh14ym9vvrrhsfglnaigqz16v96vsj8q9i336"; depends=[MASS]; }; - dada2 = derive2 { name="dada2"; version="1.30.0"; sha256="0rvnwbknvwksm50f4rw9965gnhy13rjgdfvv428xsqixgkkkyrf6"; depends=[BiocGenerics Biostrings ggplot2 IRanges Rcpp RcppParallel reshape2 ShortRead XVector]; }; - dagLogo = derive2 { name="dagLogo"; version="1.40.0"; sha256="1p9qkfsznwyisi94md29hmq6q26qrgda8r5hhvwfynr8mr11f5k3"; depends=[BiocGenerics biomaRt Biostrings httr motifStack pheatmap UniProt_ws]; }; - dcGSA = derive2 { name="dcGSA"; version="1.30.0"; sha256="08h3bc8g7md1iakzhkq47rppvazaz5lkfjhhjq0fvdbns0hk2w6i"; depends=[BiocParallel Matrix]; }; - dcanr = derive2 { name="dcanr"; version="1.18.0"; sha256="02ssbp4qvzzrz8a20vwhjj69v0hv8zkf39cnv4c5r2cp2yb8ywyw"; depends=[circlize doRNG foreach igraph Matrix plyr RColorBrewer reshape2 stringr]; }; - dce = derive2 { name="dce"; version="1.10.0"; sha256="0xyh1624pc1h1zrlr24yrknbf1xvqk2fiiy40xj30mw1100i9ric"; depends=[assertthat dplyr edgeR epiNEM expm ggplot2 ggraph glm2 glue graph graphite harmonicmeanp igraph logger magrittr MASS Matrix metap mnem naturalsort org_Hs_eg_db pcalg ppcor purrr reshape2 Rgraphviz rlang shadowtext tidygraph tidyverse]; }; - ddCt = derive2 { name="ddCt"; version="1.58.0"; sha256="1lgkcrjbifw91bkj96gy8zgcqbap2ilikdrhhkga1jzsbbmzzab5"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; }; - ddPCRclust = derive2 { name="ddPCRclust"; version="1.22.0"; sha256="0cfdy5kjd1nyysnnm955zcvac6m626wzpk794iz85mw0pr7mlx2c"; depends=[clue flowCore flowDensity flowPeaks ggplot2 openxlsx plotrix R_utils SamSPECTRAL]; }; - dearseq = derive2 { name="dearseq"; version="1.14.0"; sha256="1ldxw457zsfphm6izxz2kvxy3719gszhxb8mymx8njg6islljy27"; depends=[CompQuadForm dplyr ggplot2 KernSmooth magrittr matrixStats patchwork pbapply reshape2 rlang scattermore statmod survey tibble viridisLite]; }; - debCAM = derive2 { name="debCAM"; version="1.20.0"; sha256="1swqqrlwin2i2qq46qyfziblbfsfyd5hf6w39hygp7fdkpic14b7"; depends=[apcluster Biobase BiocParallel corpcor DMwR2 geometry NMF nnls pcaPP rJava SummarizedExperiment]; }; - debrowser = derive2 { name="debrowser"; version="1.30.2"; sha256="0fm5xjsxxc1yqzpxxxwdvi21gjq6qdgp6pqv6a5x2410y2dyghjx"; depends=[annotate AnnotationDbi apeglm ashr clusterProfiler colourpicker DESeq2 DOSE DT edgeR enrichplot GenomicRanges ggplot2 gplots Harman heatmaply igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db pathview plotly RColorBrewer RCurl reshape2 S4Vectors shiny shinyBS shinydashboard shinyjs stringi SummarizedExperiment sva]; }; - decompTumor2Sig = derive2 { name="decompTumor2Sig"; version="2.18.0"; sha256="13vwrg82zprb9h72azdqd0rkm5k2xm4mw7viawbzwkkqvg6azsdj"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo gridExtra Matrix plyr quadprog readxl S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; - decontX = derive2 { name="decontX"; version="1.0.0"; sha256="1675kwnhi1zhksxc365wih908lmfrhfpxlig5k80fipg0g1530b8"; depends=[BH celda dbscan DelayedArray ggplot2 Matrix MCMCprecision patchwork plyr Rcpp RcppEigen RcppParallel reshape2 rstan rstantools S4Vectors scater Seurat SingleCellExperiment StanHeaders SummarizedExperiment withr]; }; - decontam = derive2 { name="decontam"; version="1.22.0"; sha256="0m4zd6qxsrp7w9a8psg8xcrviim6plwgwn4rgdxy8ag0c442fsvk"; depends=[ggplot2 reshape2]; }; - deconvR = derive2 { name="deconvR"; version="1.8.0"; sha256="0pl4nwaf8swwz9nl2ynf9mm38d0x223gpz89qrj03yihxszy2n13"; depends=[assertthat BiocGenerics data_table dplyr e1071 foreach GenomicRanges IRanges magrittr MASS matrixStats methylKit minfi nnls quadprog rsq S4Vectors tidyr]; }; - decoupleR = derive2 { name="decoupleR"; version="2.8.0"; sha256="1vnlrkza33nb80qf810yfz66m3j84p8chhfdxak5lvpciqwx7dh9"; depends=[broom dplyr magrittr Matrix purrr rlang stringr tibble tidyr tidyselect withr]; }; - deepSNV = derive2 { name="deepSNV"; version="1.48.0"; sha256="16dkjqy9ba5v8nikaxdjcz7rr60dg46sfsgrjjlp82rf3256bf8r"; depends=[Biostrings GenomicRanges IRanges Rhtslib SummarizedExperiment VariantAnnotation VGAM]; }; - deltaCaptureC = derive2 { name="deltaCaptureC"; version="1.16.0"; sha256="1mapr2c1q444f2jq2mhr4bwx629qzwlbhsvisv7gcmmplsxn3f3b"; depends=[DESeq2 GenomicRanges ggplot2 IRanges SummarizedExperiment tictoc]; }; - deltaGseg = derive2 { name="deltaGseg"; version="1.42.0"; sha256="05q2b8cm60j4a4mz5b5786vcd8fwzsaz77l467ymk2v6g2lr0ndf"; depends=[changepoint fBasics ggplot2 pvclust reshape scales tseries wavethresh]; }; - demuxSNP = derive2 { name="demuxSNP"; version="1.0.0"; sha256="183s8i5gzjw55szp0pv47x442zk10swc8g6k1mpjv6qkxjdr3n4c"; depends=[BiocGenerics class combinat demuxmix ensembldb GenomeInfoDb IRanges Matrix MatrixGenerics SingleCellExperiment SummarizedExperiment VariantAnnotation]; }; - demuxmix = derive2 { name="demuxmix"; version="1.4.0"; sha256="10wa5nshp3j9llnsb8qbjd3nsrk16cng0wikr2qnrn5wjwvl2xbw"; depends=[ggplot2 gridExtra MASS Matrix]; }; - densvis = derive2 { name="densvis"; version="1.12.1"; sha256="11a112r2ckzphqj3r3fxvablzwgri0j5lx3ggh1z6pfnv113xxwj"; depends=[assertthat basilisk irlba Rcpp reticulate Rtsne]; }; - derfinder = derive2 { name="derfinder"; version="1.36.0"; sha256="0rj3szlpbxiwj3rajmr6ccnbs1mkcskql12iip8zgswmhz76rxh1"; depends=[AnnotationDbi BiocGenerics BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; }; - derfinderHelper = derive2 { name="derfinderHelper"; version="1.36.0"; sha256="01vq8xnszxqhijranzaciapw8mcn6px0jhx9zb9lyqhsvaffjh5r"; depends=[IRanges Matrix S4Vectors]; }; - derfinderPlot = derive2 { name="derfinderPlot"; version="1.36.0"; sha256="1kzndvxj1cggyymifksydkif47z1r4z9lqcz3f0ni2a515q52acg"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer reshape2 S4Vectors scales]; }; - destiny = derive2 { name="destiny"; version="3.16.0"; sha256="06xwyqlsas98lxmd0qw5ysjwbk397kyapd5jq5pzjrynsj4r9xn6"; depends=[Biobase BiocGenerics ggplot_multistats ggplot2 ggthemes irlba knn_covertree Matrix pcaMethods proxy Rcpp RcppEigen RcppHNSW RSpectra scales scatterplot3d SingleCellExperiment smoother SummarizedExperiment tidyr tidyselect VIM]; }; - diffGeneAnalysis = derive2 { name="diffGeneAnalysis"; version="1.84.0"; sha256="17ads5a8pxmw0a8jbrj4xzg64937q72qs8vi8m4841hdnlxd68b0"; depends=[minpack_lm]; }; - diffHic = derive2 { name="diffHic"; version="1.34.0"; sha256="1dcrbwvp8mq7bmp8lk8z9sa890685d5z86jflbfqs4hs16jm0ny0"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges InteractionSet IRanges limma locfit Rcpp rhdf5 Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment zlibbioc]; }; - diffUTR = derive2 { name="diffUTR"; version="1.10.0"; sha256="0zf6hr66wppjwyqb4i1k2l916pbfvpp0bbp7fs743h2bq551d74j"; depends=[ComplexHeatmap DEXSeq dplyr edgeR ensembldb GenomeInfoDb GenomicRanges ggplot2 ggrepel IRanges limma matrixStats Rsubread rtracklayer S4Vectors stringi SummarizedExperiment viridisLite]; }; - diffcoexp = derive2 { name="diffcoexp"; version="1.22.0"; sha256="0hgf6x850b0315c26nik0fbdnd0p6fmviz8651abvmw96jy29g43"; depends=[BiocGenerics DiffCorr igraph psych SummarizedExperiment WGCNA]; }; - diffcyt = derive2 { name="diffcyt"; version="1.22.1"; sha256="1lg7c33mdnp35b15n7ydmz4wgkgls6ii3r1q699i4ifxcgxjm8pj"; depends=[circlize ComplexHeatmap dplyr edgeR flowCore FlowSOM limma lme4 magrittr multcomp reshape2 S4Vectors SummarizedExperiment tidyr]; }; - diffuStats = derive2 { name="diffuStats"; version="1.22.0"; sha256="0pysp8l747cvjk13334rkf6rg38l86bykf87csnyinc921i45iry"; depends=[checkmate expm igraph MASS Matrix plyr precrec Rcpp RcppArmadillo RcppParallel]; }; - diggit = derive2 { name="diggit"; version="1.34.0"; sha256="15f4mcd9rx7a6ihpwv78l8mjnm087fbppmlvm1isvwgp6qaqjxgh"; depends=[Biobase ks viper]; }; - dir_expiry = derive2 { name="dir.expiry"; version="1.10.0"; sha256="191b8qhldxvsw09l2c0ffc1ldmx0mqxgsx6m074f28l01d3c1d9q"; depends=[filelock]; }; - discordant = derive2 { name="discordant"; version="1.26.0"; sha256="04hakn499fmcszk618z0y60xsrm1m9jcn7dxvblqvypasvvvbh1j"; depends=[Biobase biwt dplyr gtools MASS Rcpp]; }; - distinct = derive2 { name="distinct"; version="1.14.5"; sha256="14kq3vq6006r8wjwgkbl1dc2l89jd434anhdfwaz7gi63bw52hq2"; depends=[doParallel doRNG foreach ggplot2 limma Matrix Rcpp RcppArmadillo scater SingleCellExperiment SummarizedExperiment]; }; - dittoSeq = derive2 { name="dittoSeq"; version="1.14.3"; sha256="019fdjjgzh15pbp8m16g73whbjffpm4p7hwk1nz85yc2yr1381zi"; depends=[colorspace cowplot ggplot2 ggrepel ggridges gridExtra pheatmap reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; - divergence = derive2 { name="divergence"; version="1.18.0"; sha256="0n6mh253kyvlf43zc8j4dmnjsz45n843pyfzpxnxzk3jdbw050wx"; depends=[SummarizedExperiment]; }; - dks = derive2 { name="dks"; version="1.48.0"; sha256="0xswv7bjz0c2czrwzbaxf8fnb3k7bx129lzvp6f34c3gm4kbj1sd"; depends=[cubature]; }; - dmrseq = derive2 { name="dmrseq"; version="1.22.1"; sha256="10ps9k5cp2adpx91g23gc9hl1qzzax5w1mxjcjaii7knkh70cz3p"; depends=[AnnotationHub annotatr BiocParallel bsseq bumphunter DelayedMatrixStats GenomeInfoDb GenomicRanges ggplot2 IRanges locfit matrixStats nlme outliers RColorBrewer rtracklayer S4Vectors]; }; - doppelgangR = derive2 { name="doppelgangR"; version="1.30.0"; sha256="0hahrj5c7fxsz91pkhrii46xwkri468mkb3wca469cqgw2nm1ihd"; depends=[Biobase BiocParallel digest impute mnormt SummarizedExperiment sva]; }; - doseR = derive2 { name="doseR"; version="1.18.0"; sha256="08wmzhaiva0bbyrnbnaf8av537abnk916fxfqy21cz52hr317v8n"; depends=[digest edgeR lme4 matrixStats mclust RUnit S4Vectors SummarizedExperiment]; }; - doubletrouble = derive2 { name="doubletrouble"; version="1.2.5"; sha256="1zdajr92fz1k0w5crc0vcvdvxvrx6rx9cvrlsivjbsk53hjcxjn3"; depends=[AnnotationDbi BiocParallel Biostrings GenomicFeatures GenomicRanges ggplot2 mclust MSA2dist rlang syntenet]; }; - drawProteins = derive2 { name="drawProteins"; version="1.22.2"; sha256="1mc8j149szhmyd9kakbq8h6b75xvvxk7bq5c4yxs1na39a9a84ki"; depends=[dplyr ggplot2 httr readr tidyr]; }; - dreamlet = derive2 { name="dreamlet"; version="1.0.3"; sha256="01qfcbk7gpz7pgi4dkpgvpf4pvh8sh5ys3nzrp0cvq12nmzcm89m"; depends=[ashr beachmat BiocGenerics BiocParallel broom data_table DelayedArray DelayedMatrixStats dplyr edgeR ggbeeswarm ggplot2 ggrepel GSEABase gtools IRanges irlba limma lme4 mashr MASS Matrix MatrixGenerics metafor purrr Rcpp Rdpack remaCor reshape2 rlang S4Vectors scattermore SingleCellExperiment sparseMatrixStats SummarizedExperiment tidyr variancePartition zenith]; }; - drugTargetInteractions = derive2 { name="drugTargetInteractions"; version="1.10.1"; sha256="035g95v297mqzjgjk6s50c19n3hswhzkndkval3yklliycgbd92s"; depends=[AnnotationFilter BiocFileCache biomaRt dplyr ensembldb rappdirs RSQLite S4Vectors UniProt_ws]; }; - dupRadar = derive2 { name="dupRadar"; version="1.32.0"; sha256="067hyf4pfsza2vpjc88wb95mynrmfz1wd5sc3yd69x09w4c1iz20"; depends=[KernSmooth Rsubread]; }; - dyebias = derive2 { name="dyebias"; version="1.62.0"; sha256="0wph2a830n5bszlby55ia4gay8mly3gg6q0ngw4ma0ycdvkh3glx"; depends=[Biobase marray]; }; - easier = derive2 { name="easier"; version="1.8.0"; sha256="0llgg9hvadi3daw3j4vh41ivjw7q2x3l9rgxd49lpzdfd5v13kv1"; depends=[BiocParallel coin decoupleR DESeq2 dorothea dplyr easierData ggplot2 ggpubr ggrepel magrittr matrixStats progeny quantiseqr reshape2 rlang ROCR rstatix tibble tidyr]; }; - easyRNASeq = derive2 { name="easyRNASeq"; version="2.38.0"; sha256="0hirbj98kq1gvf56adr60jidij9mgqv3s0fqh3m97m5zf928l2pz"; depends=[Biobase BiocFileCache BiocGenerics BiocParallel biomaRt Biostrings edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD rappdirs Rsamtools S4Vectors ShortRead SummarizedExperiment]; }; - easylift = derive2 { name="easylift"; version="1.0.0"; sha256="1xdb8xp8f3hy0mv62z3chx7zi2nfzfijc4pwl8dn71q05lj8jh1n"; depends=[BiocFileCache GenomeInfoDb GenomicRanges R_utils rtracklayer]; }; - easyreporting = derive2 { name="easyreporting"; version="1.14.0"; sha256="0y2sjs1vc8qar9ns48xhcx9pjkxlw5zs0yg2ddprby42asds53ci"; depends=[rlang rmarkdown shiny]; }; - ecolitk = derive2 { name="ecolitk"; version="1.74.0"; sha256="1kdq5a8r6lzvrcafp4r2spslnkxaz5a4csmwi9mpn4h9sjgxbw53"; depends=[Biobase]; }; - edge = derive2 { name="edge"; version="2.34.0"; sha256="1slfbrj9syad9mjr0q9cg9glc363ggsn2qz2yx90m3cpiwvq8qxb"; depends=[Biobase MASS qvalue snm sva]; }; - edgeR = derive2 { name="edgeR"; version="4.0.16"; sha256="0jflbh1wsszz98y0y294g69mm81fwwxfbhpi3kmdncin8bwf8ifi"; depends=[limma locfit Rcpp]; }; - eds = derive2 { name="eds"; version="1.4.0"; sha256="0xdipsv2s5vl754i37xlsim8b2saz3p0355fbmn0iyc626bj00ya"; depends=[Matrix Rcpp]; }; - eiR = derive2 { name="eiR"; version="1.42.0"; sha256="0hz4d0did83jjl8x3j5bm2rd6vsbi6b7zsc2k5bhcax280jq3hjk"; depends=[BiocGenerics ChemmineR DBI digest RcppAnnoy RCurl RUnit snow snowfall]; }; - eisaR = derive2 { name="eisaR"; version="1.14.1"; sha256="0bg28252qvvzhw39vyqc0mv96bc78a995k6g5am6bzfkclgd2nri"; depends=[BiocGenerics edgeR GenomicRanges IRanges limma S4Vectors SummarizedExperiment]; }; - enhancerHomologSearch = derive2 { name="enhancerHomologSearch"; version="1.8.3"; sha256="1lw8ql80rvdavavm2hmkxpbamxsab6njwcr35qmi185rddd58z42"; depends=[BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges httr IRanges jsonlite Matrix motifmatchr Rcpp rtracklayer S4Vectors]; }; - enrichTF = derive2 { name="enrichTF"; version="1.18.0"; sha256="0lhmlxw7mpb76w2agm25v5qzxgf28wfw2xc0fnlqn2sbbfj295y9"; depends=[BiocGenerics BSgenome clusterProfiler GenomeInfoDb GenomicRanges ggplot2 ggpubr heatmap3 IRanges JASPAR2018 magrittr motifmatchr pipeFrame R_utils rmarkdown rtracklayer S4Vectors TFBSTools]; }; - enrichViewNet = derive2 { name="enrichViewNet"; version="1.0.0"; sha256="0475c20q3sc9srgqrkpabspcqlsbh63r4nfl3qjr97nsj5jxsywv"; depends=[enrichplot gprofiler2 jsonlite RCy3 strex stringr]; }; - enrichplot = derive2 { name="enrichplot"; version="1.22.0"; sha256="05ps96adbn4h8i0mqflzm1h6chjlrmfz6hx393232bhb995jfllx"; depends=[aplot DOSE ggfun ggnewscale ggplot2 ggraph ggtree GOSemSim igraph magrittr plyr purrr RColorBrewer reshape2 rlang scatterpie shadowtext yulab_utils]; }; - ensemblVEP = derive2 { name="ensemblVEP"; version="1.44.0"; sha256="1kglg8gxaaihs1m621rrwiw4874k4vkm27s7522vc8qd0frzjm66"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges S4Vectors SummarizedExperiment VariantAnnotation]; }; - ensembldb = derive2 { name="ensembldb"; version="2.26.0"; sha256="010fp03x1splddxmhpxlfv1i3paqgbcxm7l9z2lmm6zfixhb158a"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; }; - epiNEM = derive2 { name="epiNEM"; version="1.26.0"; sha256="02v3p3jdwrizx42ddkzhaz2hhvamdy4vdk16hq79kx12aqgniplf"; depends=[BoolNet e1071 graph gtools igraph latex2exp lattice latticeExtra minet mnem pcalg RColorBrewer]; }; - epialleleR = derive2 { name="epialleleR"; version="1.10.0"; sha256="1zdgjmdxzpk8r3hnx413r7m7srmadx9fi694ib4ry89h5ky6ckqx"; depends=[BH BiocGenerics data_table GenomeInfoDb GenomicRanges Rcpp Rhtslib SummarizedExperiment VariantAnnotation zlibbioc]; }; - epidecodeR = derive2 { name="epidecodeR"; version="1.10.0"; sha256="0187186mxflij9kf89sbbj30yk9bdfjhmcy2vrykx8rq4vn9rs4p"; depends=[dplyr EnvStats GenomicRanges ggplot2 ggpubr IRanges rstatix rtracklayer]; }; - epigenomix = derive2 { name="epigenomix"; version="1.42.0"; sha256="08q57qbrw4z69dzdsivl9a5r9iin84f2rbkdinm4vdnh7zlma7ab"; depends=[beadarray Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges MCMCpack Rsamtools S4Vectors SummarizedExperiment]; }; - epigraHMM = derive2 { name="epigraHMM"; version="1.10.0"; sha256="0x7phf7hak1mvlpswdkk18dqas0yri874h8h97lw0is7f70vvxrn"; depends=[bamsignals csaw data_table GenomeInfoDb GenomicRanges ggplot2 ggpubr GreyListChIP IRanges limma magrittr MASS Matrix pheatmap Rcpp RcppArmadillo rhdf5 Rhdf5lib Rsamtools rtracklayer S4Vectors scales SummarizedExperiment]; }; - epimutacions = derive2 { name="epimutacions"; version="1.6.1"; sha256="1gkq4fhk406cdkmydbvpgp22v4q9wb1ahddblwdvnha1vnraypga"; depends=[AnnotationDbi AnnotationHub BiocGenerics BiocParallel biomaRt bumphunter ensembldb epimutacionsData ExperimentHub GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel gridExtra Gviz Homo_sapiens IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest IRanges isotree matrixStats minfi purrr reshape2 robustbase rtracklayer S4Vectors SummarizedExperiment tibble TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - epistack = derive2 { name="epistack"; version="1.8.0"; sha256="0m7j1dxqmzfz4b6wkb0zczz5pzy4g23l80qpmwrdffn2m3q2r2vk"; depends=[BiocGenerics GenomicRanges IRanges plotrix S4Vectors SummarizedExperiment]; }; - epistasisGA = derive2 { name="epistasisGA"; version="1.4.0"; sha256="0dnq5a40cjrmr2r8dzc479jvazscv8nyzrsb15n7y0sp6g6nfj11"; depends=[batchtools BH bigmemory BiocParallel data_table ggplot2 igraph matrixStats qgraph Rcpp RcppArmadillo survival]; }; - epivizr = derive2 { name="epivizr"; version="2.32.0"; sha256="093i6j073ny5j1zl9spsrcclqi7ylfij2pn00s89k0pqc9bs85rj"; depends=[bumphunter epivizrData epivizrServer GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - epivizrChart = derive2 { name="epivizrChart"; version="1.24.0"; sha256="17v454wxbdz5696q3dm606r3n3lfabdpi8mh8shmv7a6kvm5pyvq"; depends=[BiocGenerics epivizrData epivizrServer htmltools rjson]; }; - epivizrData = derive2 { name="epivizrData"; version="1.30.0"; sha256="0r93s1nb7vj49c2biqpzbwpf68jaslxklha98aicq7ddxzdg1yl0"; depends=[Biobase ensembldb epivizrServer GenomeInfoDb GenomicFeatures GenomicRanges IRanges OrganismDbi S4Vectors SummarizedExperiment]; }; - epivizrServer = derive2 { name="epivizrServer"; version="1.30.0"; sha256="03dmgiifs39vy5igbjjy6xlaz5bzc1zgjsr32afn0vdbyq678fry"; depends=[httpuv mime R6 rjson]; }; - epivizrStandalone = derive2 { name="epivizrStandalone"; version="1.30.0"; sha256="0k7s3agkhf89pwkfjcg54ywnfl2anxwvgb4kws6iamyk4q337fz3"; depends=[BiocGenerics epivizr epivizrServer GenomeInfoDb GenomicFeatures git2r S4Vectors]; }; - erccdashboard = derive2 { name="erccdashboard"; version="1.36.0"; sha256="12smnn06i8mj5rq51hsmay7nz8f1hg19xxdbwax511l96mjjrq2p"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr qvalue reshape2 ROCR scales stringr]; }; - erma = derive2 { name="erma"; version="1.18.0"; sha256="0vapjfzhwlzxd049fsr00jd7lp48h9qwd95m2sqhqryqz1vsi7hz"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel GenomeInfoDb GenomicFiles GenomicRanges ggplot2 Homo_sapiens IRanges rtracklayer S4Vectors shiny SummarizedExperiment]; }; - esATAC = derive2 { name="esATAC"; version="1.24.0"; sha256="1922xgk3zq9r9j5r76ha5a7lpmxbix10i84yckg94k1i4bm71c51"; depends=[AnnotationDbi BiocGenerics BiocManager Biostrings BSgenome ChIPseeker clusterProfiler corrplot digest GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 igraph IRanges JASPAR2018 knitr magrittr motifmatchr pipeFrame R_utils Rbowtie2 Rcpp rJava rmarkdown Rsamtools rtracklayer S4Vectors ShortRead TFBSTools VennDiagram]; }; - escape = derive2 { name="escape"; version="1.12.0"; sha256="0bmin69ax7l5x3a0k9mv183277a0hl4znx02y79v2ilkgqkdm7fn"; depends=[BiocParallel broom data_table dplyr ggplot2 ggridges GSEABase GSVA Matrix MatrixGenerics msigdbr patchwork reshape2 rlang SingleCellExperiment stringr SummarizedExperiment UCell]; }; - escheR = derive2 { name="escheR"; version="1.2.0"; sha256="0hb1kkd1c57wpyfng5rmbnfqcl6dv84smxv5dj103ki3h56v55yr"; depends=[ggplot2 rlang SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; - esetVis = derive2 { name="esetVis"; version="1.28.2"; sha256="1yb0z3q056rl41g4igww7d66w9qwdd6z2cfjyr3185z53za39a3l"; depends=[Biobase hexbin MASS MLP mpm Rtsne]; }; - eudysbiome = derive2 { name="eudysbiome"; version="1.32.0"; sha256="0any342ja9y45h2adzz7aj358psydgk6379kmgrvfwmwjnrdblkx"; depends=[Biostrings plyr R_utils Rsamtools]; }; - evaluomeR = derive2 { name="evaluomeR"; version="1.18.0"; sha256="06nri3a6y9vp5frk2d3vvyqnm9jgdrfl3qlldka6dpmynyfdw04i"; depends=[class cluster corrplot flexmix fpc ggdendro ggplot2 kableExtra MASS matrixStats mclust MultiAssayExperiment plotrix prabclus randomForest Rdpack reshape2 SummarizedExperiment]; }; - exomeCopy = derive2 { name="exomeCopy"; version="1.48.0"; sha256="1d3qkr05q8nl3fj0y4qib0q37pwjh004p746nnzk8fmms75l1p11"; depends=[GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; - exomePeak2 = derive2 { name="exomePeak2"; version="1.14.3"; sha256="1hvz18hlvljbv0cmdlxzvsl2ysb5m0c5qq2y8jxzsby3zxlqplph"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DESeq2 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges magrittr mclust Rsamtools rtracklayer S4Vectors speedglm SummarizedExperiment]; }; - extraChIPs = derive2 { name="extraChIPs"; version="1.6.1"; sha256="16bfm0qa83p1ph9vl113i6xalprmww1b2hgksckil8rgqbbgqrls"; depends=[BiocIO BiocParallel broom ComplexUpset csaw dplyr edgeR EnrichedHeatmap forcats GenomeInfoDb GenomicInteractions GenomicRanges ggforce ggplot2 ggrepel ggside glue Gviz InteractionSet IRanges limma matrixStats patchwork RColorBrewer rlang Rsamtools rtracklayer S4Vectors scales stringr SummarizedExperiment tibble tidyr tidyselect vctrs VennDiagram]; }; - fCCAC = derive2 { name="fCCAC"; version="1.28.0"; sha256="0xz7c62nm8imcf0d2i3n4b9x31y0xpdb5hgp2cxgz0vl902wc00k"; depends=[ComplexHeatmap fda genomation GenomicRanges ggplot2 IRanges RColorBrewer S4Vectors]; }; - fCI = derive2 { name="fCI"; version="1.32.0"; sha256="1c17xi34j5y5ic3wr1rypzpcmxr5j81b331pz89c4n2y4fs6dghz"; depends=[FNN gtools psych rgl VennDiagram zoo]; }; - fabia = derive2 { name="fabia"; version="2.48.0"; sha256="1i64dxl7xr6k04hgg231hx11d2xl2kl59svqg90xrykjxy3j6v49"; depends=[Biobase]; }; - factDesign = derive2 { name="factDesign"; version="1.78.0"; sha256="0nnjsfvn8abjkjm4f2phwb9cfk6qp4nx1nqqvz20lwhb76xq7ydh"; depends=[Biobase]; }; - factR = derive2 { name="factR"; version="1.4.0"; sha256="1r4r7qqnjf0gfizaqbsjf8rragbmnrf9p5xfyizx6ipzsggzadxv"; depends=[BiocGenerics BiocParallel Biostrings crayon data_table dplyr drawProteins GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges pbapply purrr RCurl rlang rtracklayer S4Vectors stringr tibble tidyr wiggleplotr XML]; }; - famat = derive2 { name="famat"; version="1.12.0"; sha256="01pp56ckabvxd2v5kc5kzxbzh3f9kkqdb9w5i8z7z0c0x4497nnj"; depends=[BiasedUrn clusterProfiler dplyr DT GO_db gprofiler2 KEGGREST magrittr mgcv ontologyIndex org_Hs_eg_db plotly reactome_db rWikiPathways shiny shinyBS shinydashboard stringr tidyr]; }; - fastLiquidAssociation = derive2 { name="fastLiquidAssociation"; version="1.38.0"; sha256="1l1fv0sjdw1j3ckywqczhxd0dnxp29rkvi7fcl9pkg7ph04w9x5s"; depends=[doParallel Hmisc impute LiquidAssociation preprocessCore WGCNA]; }; - fastreeR = derive2 { name="fastreeR"; version="1.6.0"; sha256="1nvcq1c6snw9468mjcqxn9bdmbb7slwpbwx80mmsj6859cikd2d5"; depends=[ape data_table dynamicTreeCut R_utils rJava stringr]; }; - fastseg = derive2 { name="fastseg"; version="1.48.0"; sha256="10g9mdh7nzdz2b1k5gg5hk35lpapcnbs3p3z17k15aq040lpm236"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors]; }; - fcScan = derive2 { name="fcScan"; version="1.16.0"; sha256="0hhad9vg43j0yz8fp2w7qdhvdy77yr7anv0fi170042x3piq1q7r"; depends=[doParallel foreach GenomicRanges IRanges plyr rtracklayer SummarizedExperiment VariantAnnotation]; }; - fdrame = derive2 { name="fdrame"; version="1.74.0"; sha256="03fs7k26m70wq7rkaf4syzirjylxql2jfk8gaqih1xa5mazf0gsw"; depends=[]; }; - fedup = derive2 { name="fedup"; version="1.10.0"; sha256="00prfzq9yjn8gls3xl1ihfwc8sz6y16rqvihi2y84lwi8nxihii6"; depends=[data_table dplyr forcats ggplot2 ggthemes openxlsx RColorBrewer RCy3 tibble]; }; - fenr = derive2 { name="fenr"; version="1.0.5"; sha256="06cjlnrhsmg1xwqkv61vajfhm1k6b1gz8jswlkck7c6zwxf8f7mv"; depends=[assertthat BiocFileCache biomaRt dplyr ggplot2 httr2 progress purrr readr rlang rvest shiny stringr tibble tidyr tidyselect]; }; - ffpe = derive2 { name="ffpe"; version="1.46.0"; sha256="1nmb27vxldjxkqk2ghfwlsv3wwxvl0xqz53zqlxc4i3q5a8p0dhf"; depends=[affy Biobase BiocGenerics lumi methylumi sfsmisc TTR]; }; - fgga = derive2 { name="fgga"; version="1.10.2"; sha256="1cbd3gbs2414mfjb275jhvvm9h2fh4d27qpj0sngylzc33m6sdfp"; depends=[BiocFileCache curl e1071 graph gRbase igraph jsonlite RBGL]; }; - fgsea = derive2 { name="fgsea"; version="1.28.0"; sha256="0sykd4ingpw41615hbr3vw9yd1ks225hdb5qxnhbk4m4wxj814ql"; depends=[BH BiocParallel cowplot data_table fastmatch ggplot2 Matrix Rcpp scales]; }; - fishpond = derive2 { name="fishpond"; version="2.8.0"; sha256="04vl4cp0izghm7h4xk7x48lqkq0dpl47dkd068lva33jygwwpvcz"; depends=[abind GenomicRanges gtools IRanges jsonlite Matrix matrixStats qvalue S4Vectors SingleCellExperiment SummarizedExperiment svMisc]; }; - flagme = derive2 { name="flagme"; version="1.58.0"; sha256="1giqdl9prv04jp655a736gvc7xygld5v7k7vrz5c3vdrw4sgw628"; depends=[CAMERA gcspikelite gplots MASS SparseM xcms]; }; - flowAI = derive2 { name="flowAI"; version="1.32.0"; sha256="1bi13f8q7267lai71sl640w9zgd5a1iln5r4ri2dcskkwb2qxzkz"; depends=[changepoint flowCore ggplot2 knitr plyr RColorBrewer reshape2 rmarkdown scales]; }; - flowBeads = derive2 { name="flowBeads"; version="1.40.0"; sha256="0hqb67lq519dn5psn7maqs7lvkcr8a132i0zgni0zd29vsyhfg6l"; depends=[Biobase flowCore knitr rrcov xtable]; }; - flowBin = derive2 { name="flowBin"; version="1.38.0"; sha256="0cp000006z5x5a36dy9ish64ny82wi69k2biz7z64dishmnx0295"; depends=[BiocGenerics class flowCore flowFP limma snow]; }; - flowCHIC = derive2 { name="flowCHIC"; version="1.36.0"; sha256="0sfb1jd0cj4y3yzgkxzwgb7p569c9sisvv2j5146890c4qg44n75"; depends=[EBImage flowCore ggplot2 hexbin vegan]; }; - flowClean = derive2 { name="flowClean"; version="1.40.0"; sha256="0983l1anrnbrmrmkw527m4w39dgbxsmwrmbvpb99sbzxfvyjj00a"; depends=[bit changepoint flowCore sfsmisc]; }; - flowClust = derive2 { name="flowClust"; version="3.40.0"; sha256="1xg0hdxh0c1c1wc6d8gcynq8168hi61c3gjdf1223qvqwc39nsby"; depends=[Biobase BiocGenerics flowCore graph]; }; - flowCore = derive2 { name="flowCore"; version="2.14.2"; sha256="1q47c6pyvcglxs1qga2814b7i84kmm5sncsnl0fhpa9zhx1sjka5"; depends=[BH Biobase BiocGenerics cpp11 cytolib matrixStats Rcpp RProtoBufLib S4Vectors]; }; - flowCut = derive2 { name="flowCut"; version="1.12.0"; sha256="08n0rir4yhrq490assxzm9v70ydwcasnph0ib5kdz8iq4529an60"; depends=[Cairo e1071 flowCore flowDensity]; }; - flowCyBar = derive2 { name="flowCyBar"; version="1.38.0"; sha256="0zcq9qw583q4583k6d0lz01qzbsfvwnvwq3bymn9494n25p64ad1"; depends=[gplots vegan]; }; - flowDensity = derive2 { name="flowDensity"; version="1.36.1"; sha256="0w2msvkgm4j1jy397zxpcri77y1fip42yq20sd8d8z66qwmi1fg2"; depends=[car flowCore flowViz gplots polyclip]; }; - flowFP = derive2 { name="flowFP"; version="1.60.0"; sha256="0d6q253ix0x8s6x4mky6cpa43i3dmpgfwx0v215g0r3sjk8g337m"; depends=[Biobase BiocGenerics flowCore flowViz]; }; - flowGate = derive2 { name="flowGate"; version="1.2.0"; sha256="0liw8fyssd0x9isd92m4b1bv2p059c8x1mri8byrvc6la9lqf69m"; depends=[BiocManager dplyr flowCore flowWorkspace ggcyto ggplot2 purrr rlang shiny tibble]; }; - flowGraph = derive2 { name="flowGraph"; version="1.10.0"; sha256="1sjnr15qvz3yh455gs3y32xfq1cvzwr41rswmp9ampk4rkayh8nz"; depends=[data_table effsize furrr future ggiraph ggplot2 ggrepel gridExtra htmlwidgets igraph Matrix matrixStats purrr Rdpack stringi stringr visNetwork]; }; - flowMatch = derive2 { name="flowMatch"; version="1.38.0"; sha256="1vvww8ajjzlfqhsgf9if4zszmnv9ink9rnhw0bgw4p6j89j0mb1h"; depends=[Biobase flowCore Rcpp]; }; - flowMeans = derive2 { name="flowMeans"; version="1.62.0"; sha256="06n35c5fdkd3l8d5q8a23yslanirwhbf07b4f0zmf9a43zi642bv"; depends=[Biobase feature flowCore rrcov]; }; - flowMerge = derive2 { name="flowMerge"; version="2.50.0"; sha256="00b7vpqlc583jfkkxyx8hbc7y9yvbadizyinzsq6zj6szzja5myb"; depends=[feature flowClust flowCore foreach graph Rgraphviz rrcov snow]; }; - flowPeaks = derive2 { name="flowPeaks"; version="1.48.0"; sha256="1yzszarb14pw1lrqali5ws5l8zg0dksnn27x1mwxjb4cgqyazfl4"; depends=[]; }; - flowPloidy = derive2 { name="flowPloidy"; version="1.28.0"; sha256="1rpmarsfp2p96kfa713f74242mawgfa1xkgb5hnynrf3q54s6y1h"; depends=[car caTools flowCore knitr minpack_lm rmarkdown shiny]; }; - flowPlots = derive2 { name="flowPlots"; version="1.50.0"; sha256="1ldqgkmcrl1d021g5wcn366dgkjy221hiiyvs96il1zk7854rj4s"; depends=[]; }; - flowSpecs = derive2 { name="flowSpecs"; version="1.16.0"; sha256="0da4xy4cqfwha731k3wxw97bx2jjikc689w1r17rna8vky2kb8yc"; depends=[Biobase BiocGenerics BiocParallel flowCore ggplot2 reshape2 zoo]; }; - flowStats = derive2 { name="flowStats"; version="4.14.1"; sha256="1q4m6arasq60w0x24qjxbfckfgcpfk428fca733i0q2mgv1mll05"; depends=[Biobase BiocGenerics clue cluster corpcor fda flowCore flowViz flowWorkspace KernSmooth ks lattice MASS mnormt ncdfFlow RColorBrewer rrcov]; }; - flowTime = derive2 { name="flowTime"; version="1.26.0"; sha256="137885mixx11wv05v258wgzppfqbars2kyzgh7m6kf38q8asx2yj"; depends=[dplyr flowCore magrittr plyr rlang tibble]; }; - flowTrans = derive2 { name="flowTrans"; version="1.54.0"; sha256="0qfvb3gyx919w5zxaj54apm9cd754klzq4nqd1q4w5z81abhxizz"; depends=[flowClust flowCore flowViz]; }; - flowVS = derive2 { name="flowVS"; version="1.34.0"; sha256="19jlpwxjif9nmci914pdfw9g6ik58aaswj7f3pvzisyby3zxxdqs"; depends=[flowCore flowStats flowViz]; }; - flowViz = derive2 { name="flowViz"; version="1.66.0"; sha256="1hn021p2220a47qzlya8qabc9xgmxk9gcs505m7wx6gx6ysdn418"; depends=[Biobase flowCore hexbin IDPmisc KernSmooth lattice latticeExtra MASS RColorBrewer]; }; - flowWorkspace = derive2 { name="flowWorkspace"; version="4.14.3"; sha256="07hnzvzis6425j5kabdrp49wicd331k7kmkk2r7ydchxxlndz3ww"; depends=[BH Biobase BiocGenerics cpp11 cytolib data_table DelayedArray dplyr flowCore ggplot2 graph matrixStats ncdfFlow RBGL Rgraphviz Rhdf5lib RProtoBufLib S4Vectors scales XML]; }; - flowcatchR = derive2 { name="flowcatchR"; version="1.36.0"; sha256="0yp4bic5150in52dkzpf7x5w3hzbg058wbnanhh4p53mm9drwmy6"; depends=[abind BiocParallel colorRamps EBImage plotly shiny]; }; - fmcsR = derive2 { name="fmcsR"; version="1.44.0"; sha256="17il9mi1iagl474ia1lz0ajx1wq67jw5famkr1fmjlis8ymw8hnd"; depends=[BiocGenerics ChemmineR RUnit]; }; - fmrs = derive2 { name="fmrs"; version="1.12.0"; sha256="1qsp7rwpnhb0dmjhcjv2qwvyvrrdf1pnnigddq9k9s13lk6nd5ba"; depends=[survival]; }; - fobitools = derive2 { name="fobitools"; version="1.10.0"; sha256="13kd2bzm8w3h23d1289q3zc5c3fz8pchhp2c301qx4b24ip17s09"; depends=[clisymbols crayon dplyr fgsea ggplot2 ggraph magrittr ontologyIndex purrr RecordLinkage stringr textclean tictoc tidygraph tidyr vroom]; }; - frenchFISH = derive2 { name="frenchFISH"; version="1.14.0"; sha256="00z60wd14fzdcn3j9893j8n06w1ng4vl4wkwln6qnsi4pkbq7k09"; depends=[MCMCpack NHPoisson]; }; - frma = derive2 { name="frma"; version="1.54.0"; sha256="0m1d548shx0lwnhbv6sfg6qx777kd24nr4lhcrnkyag842rr6b97"; depends=[affy Biobase BiocGenerics DBI MASS oligo oligoClasses preprocessCore]; }; - frmaTools = derive2 { name="frmaTools"; version="1.54.0"; sha256="0zwi4fbdz0znav1ac00kz4lh63jksdp6vrz1mfmk2bgmwgrf7npx"; depends=[affy Biobase DBI preprocessCore]; }; - funtooNorm = derive2 { name="funtooNorm"; version="1.26.0"; sha256="1g6xja6n10m5pv3z6giriia278b8805f4gkq5dfmc7qxm946s0gy"; depends=[GenomeInfoDb IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest matrixStats minfi pls]; }; - gCrisprTools = derive2 { name="gCrisprTools"; version="2.8.0"; sha256="00zm8lj859xpd4dic7ac0834qvzpw82mfncz0sxj6vb7f9a247d9"; depends=[Biobase ComplexHeatmap ggplot2 limma rmarkdown RobustRankAggreg SummarizedExperiment]; }; - gDNAx = derive2 { name="gDNAx"; version="1.0.2"; sha256="1c4s02pqzx5ny6q2fq6zda44vgl63asiaka7k3w9c63frdrl58zz"; depends=[AnnotationDbi AnnotationHub BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges IRanges plotrix RColorBrewer Rsamtools S4Vectors SummarizedExperiment]; }; - gDR = derive2 { name="gDR"; version="1.0.0"; sha256="0zg5jdyd1n3dxrwg80cywxd47m5acj9c8cx98jjp530h62mypld9"; depends=[gDRcore gDRimport gDRutils]; }; - gDRcore = derive2 { name="gDRcore"; version="1.0.1"; sha256="09gs01hbmb7jpv1s40h8xinfzk2i6x7aw2kgy60cwllcb7z60ilc"; depends=[BiocParallel BumpyMatrix checkmate data_table futile_logger gDRutils MultiAssayExperiment purrr S4Vectors stringr SummarizedExperiment]; }; - gDRimport = derive2 { name="gDRimport"; version="1.0.0"; sha256="1lwyn86c3ag3fg5fdd099mw9lkamydjh7jkrg9frz3a7r1s7x6j6"; depends=[assertthat BumpyMatrix checkmate CoreGx data_table futile_logger gDRutils magrittr MultiAssayExperiment openxlsx PharmacoGx readxl rio S4Vectors stringi SummarizedExperiment tibble XML yaml]; }; - gDRstyle = derive2 { name="gDRstyle"; version="1.0.0"; sha256="17s9670w15ms001nps92b9vqa792a4hqg7as5b8l6pqlbcdb4g7m"; depends=[BiocCheck BiocManager desc git2r lintr pkgbuild rcmdcheck remotes rjson withr yaml]; }; - gDRutils = derive2 { name="gDRutils"; version="1.0.0"; sha256="1wzl36zqkxhjr6n5g6cfgi3vn3p30wfpl83z2g18pzs312xx2sxh"; depends=[BiocParallel BumpyMatrix checkmate data_table drc jsonlite jsonvalidate magrittr MultiAssayExperiment S4Vectors stringr SummarizedExperiment]; }; - gaga = derive2 { name="gaga"; version="2.48.0"; sha256="1fqhzbf59z511z838zd1g4xnzw4a6xlpssgvqbjxgx22l7iqgy1c"; depends=[Biobase coda EBarrays mgcv]; }; - gage = derive2 { name="gage"; version="2.52.0"; sha256="0bm5hvy3cdcm46527w45mnnnk95qm28xzdk1m53615gh55ix4iy8"; depends=[AnnotationDbi GO_db graph KEGGREST]; }; - gaggle = derive2 { name="gaggle"; version="1.70.0"; sha256="16jajl03nf8fk29vd4bkj4f1156258skkw3p884ad946ifvabznd"; depends=[graph rJava RUnit]; }; - garfield = derive2 { name="garfield"; version="1.30.0"; sha256="01la01rgs3lfv29la514y5502chl62b66ji51nlmdb8zjhvfshaq"; depends=[]; }; - gatom = derive2 { name="gatom"; version="1.0.0"; sha256="0yl88gbn85mpv2n70wgmnbi3wgh8vjhxvzd064azf2g0yj50mqn8"; depends=[BioNet data_table GGally ggplot2 htmltools htmlwidgets igraph intergraph mwcsr network plyr pryr shinyCyJS sna XML]; }; - gcapc = derive2 { name="gcapc"; version="1.26.0"; sha256="0dlwp4ry8p0jrx3j2falz8inkqlvmlkri3x002gbrml4w6ghvjy1"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS matrixStats Rsamtools S4Vectors]; }; - gcatest = derive2 { name="gcatest"; version="2.2.0"; sha256="0hngq6fj86akm5fd4rzd31y06an4r00blcfwzb65b0wlqsg79gkv"; depends=[lfa]; }; - gcrma = derive2 { name="gcrma"; version="2.74.0"; sha256="07ina8w8p5bm382v452i2wpmv90gvgli393lsgp7xy0h9in7h6yg"; depends=[affy affyio Biobase BiocManager Biostrings XVector]; }; - gdsfmt = derive2 { name="gdsfmt"; version="1.38.0"; sha256="03qgiww523kijrkciln3fw3djn20rnvwz2j0i3p518h6fbl7vlpm"; depends=[]; }; - geNetClassifier = derive2 { name="geNetClassifier"; version="1.42.0"; sha256="1k61aka780xmf1vhqm6zvzjr2626hv71f8gp1s81az939crxlrqd"; depends=[Biobase e1071 EBarrays minet]; }; - gemini = derive2 { name="gemini"; version="1.16.0"; sha256="1c58kjvb9nps1ycgfkjv0i8rzkgv6q0rnz9av3yswvn9kah64gkd"; depends=[dplyr ggplot2 magrittr mixtools pbmcapply scales]; }; - gemma_R = derive2 { name="gemma.R"; version="2.0.0"; sha256="1kcms1bzvkfkf080hm0y8d61v62vnczbwmsincw39xmnnlhga905"; depends=[assertthat Biobase bit64 data_table digest glue httr jsonlite lubridate magrittr memoise rappdirs rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; - genArise = derive2 { name="genArise"; version="1.78.0"; sha256="16b1gsdfr1r3yzinfj934igdc8rsn237wf55wwv4vb4f5b1y35g0"; depends=[locfit tkrplot xtable]; }; - geneAttribution = derive2 { name="geneAttribution"; version="1.28.0"; sha256="0kkbxz3ig50afl1jhkxxlmsbzvkzqjv5mbankw1a9aqrj1dvnvn0"; depends=[BiocGenerics GenomeInfoDb GenomicFeatures GenomicRanges IRanges org_Hs_eg_db rtracklayer]; }; - geneClassifiers = derive2 { name="geneClassifiers"; version="1.26.0"; sha256="07vzzcb8apxr5vx4gfqk1li2x7265yp5mbkmj23z0sfs4idmz97m"; depends=[Biobase BiocGenerics]; }; - geneRecommender = derive2 { name="geneRecommender"; version="1.74.0"; sha256="1wpykqwld94grkza2f8fz7d0vlq64bvki3gcfyjz13xi5kb2s849"; depends=[Biobase]; }; - geneRxCluster = derive2 { name="geneRxCluster"; version="1.38.0"; sha256="08niw9hvg1r255aajn7q5m7gm4ihjiiqbs7wxkpxb5rr8cvx8nlc"; depends=[GenomicRanges IRanges]; }; - geneXtendeR = derive2 { name="geneXtendeR"; version="1.28.0"; sha256="0binfml9aa9fk2r0kj1w2dnmqlvw4s2s66vvrsqi1l566j19c668"; depends=[AnnotationDbi BiocStyle data_table dplyr GO_db networkD3 org_Rn_eg_db RColorBrewer rtracklayer SnowballC tm wordcloud]; }; - genefilter = derive2 { name="genefilter"; version="1.84.0"; sha256="0q80z872d3z1jy69b53qxzvmshf5zx4qssmp4gj7fwdpfxj9qqjw"; depends=[annotate AnnotationDbi Biobase MatrixGenerics survival]; }; - genefu = derive2 { name="genefu"; version="2.34.0"; sha256="0qynw8n6714pxwwfh33cqmp9lfp6jhz44l6pkkncd7zi1a64fmdv"; depends=[AIMS amap biomaRt iC10 impute limma mclust survcomp]; }; - geneplast = derive2 { name="geneplast"; version="1.28.0"; sha256="10z2w652x9b3n7mjhj99ig3sclrk4h4j7vlrgv21bwy3fx6h25f2"; depends=[ape data_table igraph snow]; }; - geneplotter = derive2 { name="geneplotter"; version="1.80.0"; sha256="0zvb84jlsvmr2dvwyy4xjqv353qrxpls0v2vz0nmj1q4m7lrpl1k"; depends=[annotate AnnotationDbi Biobase BiocGenerics lattice RColorBrewer]; }; - genoCN = derive2 { name="genoCN"; version="1.54.0"; sha256="124za7wdmv76xv34syaspvdya5zi624yar5mp4pjxbwr5dcyxpgk"; depends=[]; }; - genomation = derive2 { name="genomation"; version="1.34.0"; sha256="1vbpx187m5d5g307f4jiwyy1sw4jgj1s18622y3a458ixv540zkc"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges matrixStats plotrix plyr Rcpp readr reshape2 Rsamtools rtracklayer S4Vectors seqPattern]; }; - genomeIntervals = derive2 { name="genomeIntervals"; version="1.58.0"; sha256="029d53kbscvj39c7kpvd7w6fyyv324ymn38ar4l50g75j0hkj58r"; depends=[BiocGenerics GenomeInfoDb GenomicRanges intervals IRanges S4Vectors]; }; - genomes = derive2 { name="genomes"; version="3.32.0"; sha256="03ygc3xp7z1likl79lk01554y4f52rr4285vmjvdnvwmxx3zfk85"; depends=[curl readr]; }; - genomicInstability = derive2 { name="genomicInstability"; version="1.8.0"; sha256="14l7ixzp8wv9fb5pg5ldqsvn8c7dz8rjxrmy1pcc9qjk06m758ql"; depends=[checkmate mixtools SummarizedExperiment]; }; - gep2pep = derive2 { name="gep2pep"; version="1.22.0"; sha256="0m9s8jj6xknbidrzpl2xf9xaq5w72dk09ils7jkw86zsiscr8l20"; depends=[Biobase digest foreach GSEABase iterators repo rhdf5 XML]; }; - gespeR = derive2 { name="gespeR"; version="1.34.0"; sha256="1cpin91yha24maawpzqvxqir8s65v14rf1cl3ikiwcrwawq89f2a"; depends=[Biobase biomaRt cellHTS2 doParallel dplyr foreach ggplot2 glmnet Matrix reshape2]; }; - getDEE2 = derive2 { name="getDEE2"; version="1.12.0"; sha256="1h433vz9nrsr7v26davf8wmqz6z9qckqxi8884yfgr8234z9dkk8"; depends=[htm2txt SummarizedExperiment]; }; - geva = derive2 { name="geva"; version="1.10.0"; sha256="0gk8ypzhixjp0nx4ww7xi39fgmid0yng6h3qsh5bl198j4ib1r3r"; depends=[dbscan fastcluster matrixStats]; }; - gg4way = derive2 { name="gg4way"; version="1.0.2"; sha256="1dy0kb2lvgsjx1pb7xys468cyppn13cm7c96z795gzy9w1nippig"; depends=[DESeq2 dplyr edgeR ggplot2 ggrepel glue janitor limma magrittr purrr rlang scales stringr tibble tidyr]; }; - ggbio = derive2 { name="ggbio"; version="1.50.0"; sha256="1chs58ifpwz4crcl5ymnb8ah3wf2jrn9lla3ljsywqiqn0r3i1am"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings biovizBase BSgenome ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 rlang Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; }; - ggcyto = derive2 { name="ggcyto"; version="1.30.2"; sha256="0ig23b6apyp35rxxiqd5nw46yjm2784njlafsgw98akhl8ck0g7n"; depends=[data_table flowCore flowWorkspace ggplot2 gridExtra hexbin ncdfFlow plyr RColorBrewer rlang scales]; }; - ggkegg = derive2 { name="ggkegg"; version="1.0.13"; sha256="0bm437braigzraaxd4im7qnvhylc5b09qvs1yqnjmfr5jycihjfd"; depends=[AnnotationDbi BiocFileCache data_table dplyr GetoptLong ggplot2 ggraph gtable igraph magick org_Hs_eg_db patchwork shadowtext stringr tibble tidygraph XML]; }; - ggmanh = derive2 { name="ggmanh"; version="1.6.0"; sha256="1j2qi5rp6z3442vs2r198swjz4mvf8lnvssf42jq86faan9jx10h"; depends=[gdsfmt ggplot2 ggrepel RColorBrewer rlang scales SeqArray]; }; - ggmsa = derive2 { name="ggmsa"; version="1.8.0"; sha256="1arznacrg8x8cq5k8gibnmkf1gc7bqxj5syvv0vbfibfplmschsi"; depends=[aplot Biostrings dplyr ggalt ggforce ggplot2 ggtree magrittr R4RNA RColorBrewer seqmagick statebins tidyr]; }; - ggsc = derive2 { name="ggsc"; version="1.0.2"; sha256="18s8ml11ikw9f223fv4glz7c0hizdvqks0z0nz7vbfbhc43nv2p5"; depends=[cli dplyr ggplot2 Rcpp RcppArmadillo RcppParallel rlang scattermore Seurat SingleCellExperiment SummarizedExperiment tibble tidydr tidyr yulab_utils]; }; - ggspavis = derive2 { name="ggspavis"; version="1.8.1"; sha256="060x7r74d23fpf782xs8306pfbyfywghbds5mw5i8i1wcc7ifxrx"; depends=[ggplot2 ggside SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; - ggtree = derive2 { name="ggtree"; version="3.10.1"; sha256="1p475vh567q4szb8hy2qk72pvqh5rlbyqfjcdd0i83fa2y4bi31d"; depends=[ape aplot cli dplyr ggfun ggplot2 magrittr purrr rlang scales tidyr tidytree treeio yulab_utils]; }; - ggtreeDendro = derive2 { name="ggtreeDendro"; version="1.4.0"; sha256="0gnznbv4959mp76wdz9ma64xina97mb7ndzg2vjni0cr9p1prrxc"; depends=[ggplot2 ggtree tidytree]; }; - ggtreeExtra = derive2 { name="ggtreeExtra"; version="1.12.0"; sha256="0q8k81mq5q9fym4zyrkzapgyww23lkxpkyj2s9r1y0ciclk90zdc"; depends=[cli ggnewscale ggplot2 ggtree magrittr rlang tidytree]; }; - girafe = derive2 { name="girafe"; version="1.54.0"; sha256="09sax6vqfrzj17q6szzszxn1qhhsv4jkryv3sbijxbk45scmjrj4"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; }; - glmGamPoi = derive2 { name="glmGamPoi"; version="1.14.3"; sha256="0lbsavr9mhka8s7i056h4jjb1v36v3sshrhdz74n8qadm7fy59l5"; depends=[beachmat BiocGenerics DelayedArray DelayedMatrixStats HDF5Array MatrixGenerics matrixStats Rcpp RcppArmadillo rlang SingleCellExperiment SummarizedExperiment vctrs]; }; - glmSparseNet = derive2 { name="glmSparseNet"; version="1.20.1"; sha256="09cma62cj9wpgd3pm2j9azj7wvwfnk13715qnlzrk1ika4qkzl9l"; depends=[biomaRt digest dplyr forcats futile_logger futile_options ggplot2 glmnet glue httr Matrix MultiAssayExperiment readr reshape2 stringr SummarizedExperiment survminer]; }; - globalSeq = derive2 { name="globalSeq"; version="1.30.0"; sha256="1b0qjcwrm8svck7ykz9h2vrcc06cag2dczxlzd13arqhr4d1a6p7"; depends=[]; }; - globaltest = derive2 { name="globaltest"; version="5.56.0"; sha256="14kcsx1gynl0fijq67qb5zvfxn4yqj8809p7535y455rd0vddp5r"; depends=[annotate AnnotationDbi Biobase survival]; }; - gmapR = derive2 { name="gmapR"; version="1.44.0"; sha256="08l0937r0zzb8n2h7c8ydia9c63rng4pw63pbwm4i9d8cbzp0hcs"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; - gmoviz = derive2 { name="gmoviz"; version="1.14.0"; sha256="070r948gm4i5l4mnskl2agmfjpihvjpw2zgdji2z2dp0lh5d4bwn"; depends=[BiocGenerics Biostrings circlize colorspace ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridBase IRanges pracma Rsamtools rtracklayer S4Vectors]; }; - goProfiles = derive2 { name="goProfiles"; version="1.64.0"; sha256="14h8phx5qp8xismvf290bja4wv4g71k24iiv2nmqsac5myr402kw"; depends=[AnnotationDbi Biobase CompQuadForm GO_db stringr]; }; - goSTAG = derive2 { name="goSTAG"; version="1.26.0"; sha256="0pnqg3yki19xv3icqqayw75wpq3d5cx0z97qspmh9c3i5p05341f"; depends=[AnnotationDbi biomaRt GO_db memoise]; }; - goSorensen = derive2 { name="goSorensen"; version="1.4.0"; sha256="1q6isry70rczq4dj5ibwf9xzw7vkcws57h9p6dr16l2ij6b524dx"; depends=[clusterProfiler GO_db goProfiles org_Hs_eg_db stringr]; }; - goTools = derive2 { name="goTools"; version="1.76.0"; sha256="1qfl4617zwrl7nd56q1flzhzh9shhcs49m8s3327bpz0xpvc56vc"; depends=[AnnotationDbi GO_db]; }; - goseq = derive2 { name="goseq"; version="1.54.0"; sha256="0waw5hhxh8yab8fqw9gnd3l39s6wkmp8690rhs4llarpqz6ssrhk"; depends=[AnnotationDbi BiasedUrn BiocGenerics geneLenDataBase GO_db mgcv]; }; - gpls = derive2 { name="gpls"; version="1.74.0"; sha256="1z6mdqcjwqby2hv8x9380q9qsm9y2kqaqln9bqxcrsxj3bpgwsj0"; depends=[]; }; - gpuMagic = derive2 { name="gpuMagic"; version="1.18.0"; sha256="0x5d94imcxg4m5whyhmlxgixxcn4qmh3jfm7kplhi78fb6abmrql"; depends=[BiocGenerics Deriv DescTools digest pryr Rcpp stringr]; }; - granulator = derive2 { name="granulator"; version="1.10.0"; sha256="0sv8r5sqxay3f0g59kgabrdjzv0j7czs10sm2c9k18fjs6cn08h1"; depends=[cowplot dplyr dtangle e1071 epiR ggplot2 ggplotify limSolve magrittr MASS nnls pheatmap purrr rlang tibble tidyr]; }; - graper = derive2 { name="graper"; version="1.18.0"; sha256="0ghr5dfm7iv9hhjlmzcshi0g3w5m4iikqrm3sb7kxnb364gpj27b"; depends=[BH cowplot ggplot2 Matrix matrixStats Rcpp RcppArmadillo]; }; - graph = derive2 { name="graph"; version="1.80.0"; sha256="0p7g7ykpkngbs3h1dsackfy93l8lvc301lr64ffsiaw60gllcx01"; depends=[BiocGenerics]; }; - graphite = derive2 { name="graphite"; version="1.48.0"; sha256="1h8j10jx02zsxs6rzids3gy4xchdhgzkifa5grrfbn8faf9ycy2n"; depends=[AnnotationDbi graph httr purrr rappdirs rlang]; }; - groHMM = derive2 { name="groHMM"; version="1.36.0"; sha256="15ibdbpj7vqypxfnp2w06w9lync11z3azzss6s97xhadkgsbw4vq"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; }; - gscreend = derive2 { name="gscreend"; version="1.16.1"; sha256="1ghdv2a3arpx075866zizinynhi2037qsdz6j5b0qyhr4gv9l65h"; depends=[BiocParallel fGarch nloptr SummarizedExperiment]; }; - gsean = derive2 { name="gsean"; version="1.22.0"; sha256="15rargfrhgrxaad4sza6w80mlgmrwq18yzhi99282rzm1s7rxd5r"; depends=[fgsea PPInfer]; }; - gtrellis = derive2 { name="gtrellis"; version="1.34.0"; sha256="022wn0l2wfizlz6d5plkphjsjbmxw2wcvxrzr4vanczjzzyxv5c5"; depends=[circlize GenomicRanges GetoptLong IRanges]; }; - gwascat = derive2 { name="gwascat"; version="2.34.0"; sha256="028n8v1pgkr1q5s9wslql8ayk1cbx6a9a2rjka9pdwz6rq1iyagy"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges readr S4Vectors snpStats VariantAnnotation]; }; - gwasurvivr = derive2 { name="gwasurvivr"; version="1.20.0"; sha256="0wdp5zvf0iawfc2y16hh5p9cag86m8g1sd6q0l0wha5i1w84yzcd"; depends=[GWASTools matrixStats SNPRelate SummarizedExperiment survival VariantAnnotation]; }; - h5vc = derive2 { name="h5vc"; version="2.36.0"; sha256="0h3vffm1yadryxqjz6x7lapx9ysmmmqvc6m1ayw3cfzswkqfd86z"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra h5vcData IRanges reshape rhdf5 Rhtslib Rsamtools S4Vectors]; }; - hapFabia = derive2 { name="hapFabia"; version="1.44.0"; sha256="0mmpwbpi2z8cj7xssxrwbyzcr47szywf0bm9d9vnwkl0z6awmxfz"; depends=[Biobase fabia]; }; - hca = derive2 { name="hca"; version="1.10.1"; sha256="0xb7lhdsxjzjyxgzk5qxh6nlzxz2gdrv1pi72gq72zrdsnfzn4y7"; depends=[BiocFileCache digest dplyr DT httr jsonlite miniUI readr shiny tibble tidyr]; }; - heatmaps = derive2 { name="heatmaps"; version="1.26.0"; sha256="1b52a0rlziaxwbsxmvd43g4ilr5n1vx6gz4azsnlp5hpmw524mdq"; depends=[BiocGenerics Biostrings EBImage GenomeInfoDb GenomicRanges IRanges KernSmooth Matrix plotrix RColorBrewer]; }; - hermes = derive2 { name="hermes"; version="1.6.1"; sha256="1a7pn5cg773v2m0mk5611ilfyr1mbnl9ami2j5wpfliq44iv16ny"; depends=[assertthat Biobase BiocGenerics biomaRt checkmate circlize ComplexHeatmap DESeq2 dplyr edgeR EnvStats forcats GenomicRanges ggfortify ggplot2 ggrepel IRanges lifecycle limma magrittr matrixStats MultiAssayExperiment purrr R6 Rdpack rlang S4Vectors SummarizedExperiment tidyr]; }; - hiAnnotator = derive2 { name="hiAnnotator"; version="1.36.0"; sha256="072nhfbzwkl26nrzrfgph56ygjwyldj1qfviv7xj3bpqcz6fhq9y"; depends=[BSgenome dplyr foreach GenomicRanges ggplot2 iterators rtracklayer scales]; }; - hiReadsProcessor = derive2 { name="hiReadsProcessor"; version="1.38.0"; sha256="0dkg4hq43radr7yhyh9hhjyib3220rc0s1v4kzxaxxl05ylj92ds"; depends=[BiocGenerics BiocParallel Biostrings dplyr GenomicAlignments GenomicRanges hiAnnotator readxl sonicLength]; }; - hicVennDiagram = derive2 { name="hicVennDiagram"; version="1.0.2"; sha256="06rg50r2p02m6zhxn2hni8qignwh6p65qqi4p4pniwh11y8w0c6s"; depends=[ComplexUpset eulerr ggplot2 htmlwidgets InteractionSet reshape2 rtracklayer S4Vectors svglite]; }; - hierGWAS = derive2 { name="hierGWAS"; version="1.32.0"; sha256="0g8lkymr18jfvswwi0qfv44vwzpf3pzjs61zlqn67yr6jpsak34g"; depends=[fastcluster fmsb glmnet]; }; - hierinf = derive2 { name="hierinf"; version="1.20.0"; sha256="1ahb8ijyghz10zq71dqfscmwbwb3i20b3ai5l3nyja78616viprf"; depends=[fmsb glmnet]; }; - hipathia = derive2 { name="hipathia"; version="3.2.0"; sha256="1lq0xcwjvgcm8l2kzaxf44ng1h57i63xylyv813pq9szma3zl8bx"; depends=[AnnotationHub coin DelayedArray dplyr ggplot2 ggpubr igraph limma matrixStats MetBrewer MultiAssayExperiment preprocessCore reshape2 S4Vectors servr SummarizedExperiment tibble visNetwork]; }; - hmdbQuery = derive2 { name="hmdbQuery"; version="1.22.0"; sha256="0x50m4i7drygj340j5jbcfv6ddal8fab2afdrr5wzax8xn1ygmm9"; depends=[S4Vectors XML]; }; - hoodscanR = derive2 { name="hoodscanR"; version="1.0.0"; sha256="1gyzb6vfzg95yc7w05z5apgbyk6al2k4mr2m83k0p19niy9v7ryd"; depends=[circlize ComplexHeatmap ggplot2 knitr RANN Rcpp rlang rmarkdown scico SpatialExperiment SummarizedExperiment]; }; - hopach = derive2 { name="hopach"; version="2.62.0"; sha256="1v0rqk7757l8samyqd05dpplg6pdrss4nk7fi2hwfkj1vf5wz14s"; depends=[Biobase BiocGenerics cluster]; }; - hpar = derive2 { name="hpar"; version="1.44.0"; sha256="19jdy0q3larl5lxjzqlnyynq9rya56fyvf1yx9pwsyag1c148z08"; depends=[ExperimentHub]; }; - hummingbird = derive2 { name="hummingbird"; version="1.12.0"; sha256="1hpbdmdymlnpdqnpq3y4iw9i44vgf399862xw50sjhm7r4d6p3hh"; depends=[GenomicRanges IRanges Rcpp SummarizedExperiment]; }; - hypeR = derive2 { name="hypeR"; version="2.0.0"; sha256="0axkk4qbj29g2f332qmi0wmsbkh9p3sykn7l1r9wamf46dfc1m8z"; depends=[BiocStyle dplyr ggforce ggplot2 htmltools httr igraph kableExtra magrittr msigdbr openxlsx purrr R6 reactable reshape2 rlang rmarkdown scales shiny stringr visNetwork]; }; - hyperdraw = derive2 { name="hyperdraw"; version="1.54.0"; sha256="1lgfpw9f7095lgk46gdpxq3z52c24xw4ajl7yid3pcgw19bfcgk5"; depends=[graph hypergraph Rgraphviz]; }; - hypergraph = derive2 { name="hypergraph"; version="1.74.0"; sha256="16bjjfzcndjfqsywzw2cn551fgqlnll2gi975w0qqxhkh3jssgmi"; depends=[graph]; }; - iASeq = derive2 { name="iASeq"; version="1.46.0"; sha256="0y4lq8s9dr9jjsipfdf126g27065k5hg2vvj3q72jwqmkhymdw1m"; depends=[]; }; - iBBiG = derive2 { name="iBBiG"; version="1.46.0"; sha256="15m83fy8l3qbwbg35935q4w1kbwv0ki4pwdikxfaqs99xx915ajs"; depends=[ade4 biclust xtable]; }; - iBMQ = derive2 { name="iBMQ"; version="1.42.0"; sha256="1hc6ki98b8n0x46psjz46lk8rdlm5rj7plq8fd6fv9z0xix898iq"; depends=[Biobase ggplot2]; }; - iCARE = derive2 { name="iCARE"; version="1.30.0"; sha256="0qh63swkzsyi8cdabil49mbgcz9ry26vmjkrpc0jcqyqjsihxs27"; depends=[gtools Hmisc plotrix]; }; - iCNV = derive2 { name="iCNV"; version="1.22.0"; sha256="11d0pmn0ywqg2gvwjn7yv3xdi9i1fpfpnbzh31jws0629fw5v3h9"; depends=[CODEX data_table dplyr fields ggplot2 rlang tidyr truncnorm]; }; - iCOBRA = derive2 { name="iCOBRA"; version="1.30.0"; sha256="1f0j10wha60vv592vsnv2pcqwz7g2fkld8pnar9rpwwb7qd0wcnf"; depends=[dplyr DT ggplot2 limma markdown reshape2 ROCR scales shiny shinyBS shinydashboard UpSetR]; }; - iCheck = derive2 { name="iCheck"; version="1.32.0"; sha256="1x4f5wacsgjl4lq93gav0ljc5xgqra65dzrw9y1zzw5cm4z33wyq"; depends=[affy Biobase GeneSelectMMD gplots limma lmtest lumi MASS preprocessCore randomForest rgl scatterplot3d]; }; - iChip = derive2 { name="iChip"; version="1.56.0"; sha256="07z5lcfy89mmsjnnx44lwfds3bim7z050sr4fdzy2sixbfbypxzy"; depends=[limma]; }; - iClusterPlus = derive2 { name="iClusterPlus"; version="1.38.0"; sha256="0p56w6431jg921416dkyiykccvr7alq6x6r1gcx5d9hkcpyncks1"; depends=[]; }; - iGC = derive2 { name="iGC"; version="1.32.0"; sha256="0gvb1cvhmcz4vnhlb2s0nsp71jr98irdqb5mchd5rpk0jysg24dr"; depends=[data_table plyr]; }; - iNETgrate = derive2 { name="iNETgrate"; version="1.0.0"; sha256="1zagf0i7akv40jf7inypbxrzdmjg2n26lckqcmiajivb7kfzv1pp"; depends=[BiocStyle caret GenomicRanges glmnet gplots Homo_sapiens igraph matrixStats minfi Pigengene Rfast SummarizedExperiment survival tidyr tidyselect WGCNA]; }; - iPAC = derive2 { name="iPAC"; version="1.46.0"; sha256="0bn7lfg6mp38y9n10fcdcqak9l4hi3prcmky64gxclbl5cqnan68"; depends=[Biostrings gdata multtest scatterplot3d]; }; - iPath = derive2 { name="iPath"; version="1.8.0"; sha256="09jkl14wgzq0zfj74vivavyz00lx8zxyml62zf3nk8nmfwpckj2k"; depends=[BiocParallel ggplot2 ggpubr matrixStats mclust Rcpp RcppArmadillo survival survminer]; }; - iSEE = derive2 { name="iSEE"; version="2.14.0"; sha256="0khysw2nj83sn2vgzjn76qrqfkiqwn5yc11c6x5l2zpllvzfrcj4"; depends=[BiocGenerics circlize colourpicker ComplexHeatmap DT ggplot2 ggrepel igraph mgcv rintrojs S4Vectors shiny shinyAce shinydashboard shinyjs shinyWidgets SingleCellExperiment SummarizedExperiment vipor viridisLite]; }; - iSEEde = derive2 { name="iSEEde"; version="1.0.0"; sha256="15926dl2ricrfa43pknm1xi0lp4808grih3d27i9hnlxzxvhbhlw"; depends=[DESeq2 edgeR iSEE S4Vectors shiny SummarizedExperiment]; }; - iSEEhex = derive2 { name="iSEEhex"; version="1.4.0"; sha256="1frjayfr9rmwf2ank9n8slbkzcyk90azism88262gkypxk2g7npr"; depends=[ggplot2 hexbin iSEE shiny SummarizedExperiment]; }; - iSEEhub = derive2 { name="iSEEhub"; version="1.4.0"; sha256="16889vcdjbd2sxshqxzkdnza1x269dm2h12985qrbkk1ja3bdpzw"; depends=[AnnotationHub BiocManager DT ExperimentHub iSEE rintrojs S4Vectors shiny shinydashboard shinyjs SingleCellExperiment SummarizedExperiment]; }; - iSEEindex = derive2 { name="iSEEindex"; version="1.0.0"; sha256="1qp3nnxn020frf4gjx1327dl60d2gl06qfallaaxcas14jgj7p1d"; depends=[BiocFileCache DT iSEE paws_storage rintrojs shiny shinydashboard shinyjs SingleCellExperiment stringr SummarizedExperiment urltools]; }; - iSEEpathways = derive2 { name="iSEEpathways"; version="1.0.0"; sha256="0avi7g37px8p1h0wp7q63hnp47gph0yhc694p0gfzl24kvnmshgf"; depends=[ggplot2 iSEE S4Vectors shiny shinyWidgets SummarizedExperiment]; }; - iSEEu = derive2 { name="iSEEu"; version="1.14.0"; sha256="0xg6b9cpxjacmhjbzmjql2ywjfq2g441v2b7f2cj4gqx6flajv70"; depends=[colourpicker DT ggplot2 IRanges iSEE iSEEhex S4Vectors shiny shinyAce SingleCellExperiment SummarizedExperiment]; }; - iSeq = derive2 { name="iSeq"; version="1.54.0"; sha256="1mc6xl5jyvllq9w6k67rz10hapg86fw0jwjcy4f5m8p5w12lh3rg"; depends=[]; }; - iasva = derive2 { name="iasva"; version="1.20.0"; sha256="1q5z3qgrv16nlqars0ziwyb116bykcd5jkkqm2lvxbw6yyam6pk2"; depends=[BiocParallel cluster irlba SummarizedExperiment]; }; - ibh = derive2 { name="ibh"; version="1.50.0"; sha256="1jppg7r2xckw6pki3vj0j46v19ryhqsr05rk43vjfz876myprnkd"; depends=[simpIntLists]; }; - icetea = derive2 { name="icetea"; version="1.20.0"; sha256="0lrf0mdmqyfr5zmi10rrgn31g63sh4a2wi6svi406pi656z4rzhr"; depends=[BiocGenerics BiocParallel Biostrings csaw DESeq2 edgeR GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges limma Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm6_ensGene VariantAnnotation]; }; - ideal = derive2 { name="ideal"; version="1.26.0"; sha256="0k1wxfww3dgfpfllpb1xxn1yjwmrkwf907njg9l85gm997smvdf9"; depends=[AnnotationDbi base64enc BiocParallel DESeq2 dplyr DT GenomicRanges ggplot2 ggrepel GO_db goseq GOstats gplots heatmaply IHW IRanges knitr limma pcaExplorer pheatmap plotly rentrez rintrojs rlang rmarkdown S4Vectors shiny shinyAce shinyBS shinydashboard stringr SummarizedExperiment topGO UpSetR]; }; - idiogram = derive2 { name="idiogram"; version="1.78.0"; sha256="06x2h5m5i72jp9r7f5c40cqblb5mxapka4vcih6z0638xalkay74"; depends=[annotate Biobase plotrix]; }; - idpr = derive2 { name="idpr"; version="1.12.0"; sha256="0q7vk77s9q75a6k3rhcg06ywp611dyfi9hsgr4rzrwi1qfr943ma"; depends=[Biostrings dplyr ggplot2 jsonlite magrittr plyr rlang]; }; - idr2d = derive2 { name="idr2d"; version="1.16.0"; sha256="06vvc590i73zkm1scq3zgyvc1qdx8s7h0w12v27axacw551639n0"; depends=[dplyr futile_logger GenomeInfoDb GenomicRanges ggplot2 idr IRanges magrittr reticulate scales stringr]; }; - igvR = derive2 { name="igvR"; version="1.22.0"; sha256="0cjilipjcjkgs0gc9lwdzlr2qrv3qyd0vv67awb18algcfsl93mk"; depends=[BiocGenerics BrowserViz GenomicAlignments GenomicRanges httpuv httr RColorBrewer rtracklayer VariantAnnotation]; }; - illuminaio = derive2 { name="illuminaio"; version="0.44.0"; sha256="15i47b995dqh0dlg60lss5vgj31as3cwhb2z5fqbnknx3lj7s6rl"; depends=[base64]; }; - imcRtools = derive2 { name="imcRtools"; version="1.8.0"; sha256="06hca7ri6qigpr2wbiy7pwfxpx915dkccnsiyd5n76awv5rww8w2"; depends=[abind BiocNeighbors BiocParallel concaveman cytomapper data_table distances dplyr DT EBImage ggplot2 ggraph igraph magrittr MatrixGenerics pheatmap readr RTriangle S4Vectors scuttle sf SingleCellExperiment SpatialExperiment stringr SummarizedExperiment tidygraph tidyselect viridis vroom]; }; - immunoClust = derive2 { name="immunoClust"; version="1.34.0"; sha256="1lm62kzf5w1z52ii92mrh6hq6py7b32rrxxwgbw0iqw2329nwqdz"; depends=[flowCore lattice]; }; - immunotation = derive2 { name="immunotation"; version="1.10.0"; sha256="10k5gsi1ijddyp61xsc4301r264ns5hshsf88vi4scv6lhha8s69"; depends=[curl ggplot2 maps ontologyIndex readr rlang rvest stringr tidyr xml2]; }; - impute = derive2 { name="impute"; version="1.76.0"; sha256="0q7mnx99ndna1r2r0v7jc3w8ly8qw33flwbgkcvrfhk6dzvbn4pl"; depends=[]; }; - infercnv = derive2 { name="infercnv"; version="1.18.1"; sha256="1d9in3hs2n91pv498715d3qi82c7xsnm42vnzgfyz096zjghgp7a"; depends=[ape argparse BiocGenerics caTools coda coin digest doParallel dplyr edgeR fastcluster fitdistrplus foreach futile_logger future ggplot2 gplots gridExtra HiddenMarkov igraph Matrix parallelDist phyclust RANN RColorBrewer reshape2 rjags Seurat SingleCellExperiment SummarizedExperiment tidyr]; }; - infinityFlow = derive2 { name="infinityFlow"; version="1.12.0"; sha256="0p41b1y22sjhxx8q1qzhgb7wr0wsbazlyn7cg9ipz8m9v5xg7idf"; depends=[Biobase flowCore generics gtools matlab pbapply png raster uwot xgboost]; }; - intansv = derive2 { name="intansv"; version="1.42.0"; sha256="0i542gpjibppnvq5afnp9i68jvab6k6w7xj7gdy4jkck6gm12g71"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; }; - interacCircos = derive2 { name="interacCircos"; version="1.12.0"; sha256="08szyplv7b4xl6jq71ghaknc8fyr2h16lzllc4w8svkhainkvsbw"; depends=[htmlwidgets plyr RColorBrewer]; }; - interactiveDisplay = derive2 { name="interactiveDisplay"; version="1.40.0"; sha256="0w81c5kc48gjavln50ysgr3vaf8s4fb6632ckzb1q225j9ik2gia"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; }; - interactiveDisplayBase = derive2 { name="interactiveDisplayBase"; version="1.40.0"; sha256="14cw90qlp8y4k0fs7xim8qvhzwbb8sn334mc72fkxg1h4bs8bxjw"; depends=[BiocGenerics DT shiny]; }; - ipdDb = derive2 { name="ipdDb"; version="1.20.0"; sha256="15m020ilwa6jwj4x4xji7rrb4x7h5q2sm5xsgbipryx7hzvwz1am"; depends=[AnnotationDbi AnnotationHub assertthat Biostrings DBI GenomicRanges IRanges RSQLite]; }; - isobar = derive2 { name="isobar"; version="1.48.0"; sha256="13b3a5q3nn8x7aqbg4mjwigxh3wcblnhiq18fxpzxd89kgklf1f7"; depends=[Biobase biomaRt distr ggplot2 plyr]; }; - isomiRs = derive2 { name="isomiRs"; version="1.30.0"; sha256="1m72a7m0rn0q33nv9gb193gv8f4wrhxrjr837b4am7shv6lklj48"; depends=[AnnotationDbi assertive_sets Biobase BiocGenerics broom cluster cowplot DEGreport DESeq2 dplyr GenomicRanges GGally ggplot2 gplots gridExtra gtools IRanges limma RColorBrewer readr reshape rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; - iterClust = derive2 { name="iterClust"; version="1.24.0"; sha256="0k2hcc7g4ynd9jrk8f286y6gwc4bfs4bnfs8qpj2i8zamwdaldng"; depends=[Biobase cluster]; }; - iterativeBMA = derive2 { name="iterativeBMA"; version="1.60.0"; sha256="04awfmpk4vi09wk256l0fsy40pn79kjfkj8k2ri8zjgjng8yf5ns"; depends=[Biobase BMA leaps]; }; - iterativeBMAsurv = derive2 { name="iterativeBMAsurv"; version="1.60.0"; sha256="1i4kz882lzilz5gsxcw036hxvx3kh5v2xhqbaj2mrhh3lc8a1s89"; depends=[BMA leaps survival]; }; - ivygapSE = derive2 { name="ivygapSE"; version="1.24.0"; sha256="0zrysavdj8af8c2k4mncyvy7355fdw4xnz6h8i79l650qi8hmlrd"; depends=[ggplot2 hwriter plotly S4Vectors shiny SummarizedExperiment survival survminer UpSetR]; }; - karyoploteR = derive2 { name="karyoploteR"; version="1.28.0"; sha256="0jr9lp250s9066hh40vxb6c6yhdd8yrnk0zklwylkf3jpbdgl621"; depends=[AnnotationDbi bamsignals bezier biovizBase digest GenomeInfoDb GenomicFeatures GenomicRanges IRanges memoise regioneR Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; - katdetectr = derive2 { name="katdetectr"; version="1.4.0"; sha256="0i1aq7binhlqbknpwcpj4nn4dh3x6i9brg4yvgcz13rd1ak08p9z"; depends=[Biobase BiocParallel BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 changepoint changepoint_np checkmate dplyr GenomeInfoDb GenomicRanges ggplot2 ggtext IRanges maftools plyranges Rdpack rlang S4Vectors tibble tidyr VariantAnnotation]; }; - kebabs = derive2 { name="kebabs"; version="1.36.0"; sha256="17lilr40qdz8vjsb7m4il2q44rd6pskw8bhzxybq8rhd83c15753"; depends=[apcluster Biostrings e1071 IRanges kernlab LiblineaR Matrix Rcpp S4Vectors XVector]; }; - keggorthology = derive2 { name="keggorthology"; version="2.54.0"; sha256="0nb6q4l8hzbfjs2njdqwbn5g2vayfc41bbxf8dsfy1njm3r1km29"; depends=[AnnotationDbi DBI graph hgu95av2_db]; }; - kissDE = derive2 { name="kissDE"; version="1.22.0"; sha256="0zq0wll048rnqxhwby29g70d8clxz4qdqfp0kxq6gbd9l6xyq511"; depends=[ade4 aods3 Biobase DESeq2 doParallel DSS DT factoextra foreach ggplot2 gplots matrixStats shiny shinycssloaders]; }; - lapmix = derive2 { name="lapmix"; version="1.68.0"; sha256="1kw4jqjfkpk2rhdxgypmamkmzl9w5csasncw4kbw1vjzbjzihfyl"; depends=[Biobase]; }; - ldblock = derive2 { name="ldblock"; version="1.32.0"; sha256="1caxzc99kga2c90m2ydmnvcd8lfp0igmmickpl0ikrhwjlbfnc0p"; depends=[BiocGenerics httr Matrix rlang]; }; - lefser = derive2 { name="lefser"; version="1.12.1"; sha256="0aywwinp4wwwa12rq60gpfk5gn28zyimayxakgj4lhfwjk0byz8m"; depends=[coin ggplot2 MASS S4Vectors SummarizedExperiment]; }; - lemur = derive2 { name="lemur"; version="1.0.5"; sha256="1079s7m749fsg37wmwq57i7hf7ba8mz64m404sybajal8k0p4j20"; depends=[BiocGenerics BiocNeighbors DelayedMatrixStats glmGamPoi harmony HDF5Array irlba limma Matrix MatrixGenerics matrixStats Rcpp RcppArmadillo rlang S4Vectors SingleCellExperiment SummarizedExperiment vctrs]; }; - les = derive2 { name="les"; version="1.52.0"; sha256="00xay71lzqh59bzpm5y7y6i8p39m5dag0qzpd51jkbkbwhdg95f6"; depends=[boot fdrtool gplots RColorBrewer]; }; - levi = derive2 { name="levi"; version="1.20.0"; sha256="0p5hmj0jskwag9ay1b3njf25ajns2317dkv2l9z56xqlgnr4lycz"; depends=[colorspace dplyr DT ggplot2 httr igraph knitr RColorBrewer Rcpp reshape2 rmarkdown shiny shinydashboard shinyjs testthat xml2]; }; - lfa = derive2 { name="lfa"; version="2.2.0"; sha256="1xrwvw7227znd1h7426k8l86197yc24b4v608issh5fqglmhljns"; depends=[corpcor RSpectra]; }; - limma = derive2 { name="limma"; version="3.58.1"; sha256="01byjnhhjyxk9x871rk8bgqq6lkp1a6dylqbdphpzp88b1jf2f9m"; depends=[statmod]; }; - limmaGUI = derive2 { name="limmaGUI"; version="1.78.0"; sha256="1psx743jn36hw1np6k613wajs17rhnyny4rs0cp297z3wgv2ra86"; depends=[limma R2HTML tkrplot xtable]; }; - lineagespot = derive2 { name="lineagespot"; version="1.6.0"; sha256="0yvw47ha9g1sywici5dkyb90d2sw0ypcddn1x2gls6y45l2wh1i6"; depends=[data_table httr MatrixGenerics stringr SummarizedExperiment VariantAnnotation]; }; - lionessR = derive2 { name="lionessR"; version="1.16.0"; sha256="0pm4jn5jzv38d6cfxn1cjw03wm47il308jr01labfw2ya2ris24z"; depends=[S4Vectors SummarizedExperiment]; }; - lipidr = derive2 { name="lipidr"; version="2.16.0"; sha256="1jrs44553d3d7sljgkxpwnaqv1ym6j9rhwv6i764744pmijhbmbh"; depends=[data_table dplyr fgsea forcats ggplot2 imputeLCMD limma magrittr rlang ropls S4Vectors SummarizedExperiment tidyr]; }; - lisaClust = derive2 { name="lisaClust"; version="1.10.1"; sha256="1cmqvslb0f46b01d40zh3f7m95f4szhs44wwhiv0n9ppibx13mgk"; depends=[BiocGenerics BiocParallel class concaveman data_table dplyr ggplot2 pheatmap purrr S4Vectors SingleCellExperiment SpatialExperiment spatstat_explore spatstat_geom spatstat_random spicyR SummarizedExperiment tidyr]; }; - lmdme = derive2 { name="lmdme"; version="1.44.0"; sha256="1k0ilpy29kn2v7md0ayylg8az3dj8jrjgb0jv1vbx28abfqri02s"; depends=[limma pls stemHypoxia]; }; - loci2path = derive2 { name="loci2path"; version="1.22.0"; sha256="0im1s5wngnvkza62fh1qpp64fq5p4y556c1251v26230kppdmkas"; depends=[BiocParallel data_table GenomicRanges pheatmap RColorBrewer S4Vectors wordcloud]; }; - logicFS = derive2 { name="logicFS"; version="2.22.0"; sha256="138w02qhmshd72ljh0mq7y6rg9yk818b74milmawvil4fx9k2dvq"; depends=[LogicReg mcbiopi survival]; }; - lpNet = derive2 { name="lpNet"; version="2.34.2"; sha256="0l48xd3jfn9hw9s8bm3r9vqj2icsc7jk9q58g19ic533w0nk70pc"; depends=[KEGGgraph lpSolve]; }; - lpsymphony = derive2 { name="lpsymphony"; version="1.30.0"; sha256="1946wlw9zvyxdd99rs2rliks54ff5dkibavxd48aj7cqjsjh6b7g"; depends=[]; }; - lumi = derive2 { name="lumi"; version="2.54.0"; sha256="0iwkag84w1sc703jcdfx0h799hlchdiqvlps8g8lwmil5b0xlsw5"; depends=[affy annotate AnnotationDbi Biobase DBI GenomicFeatures GenomicRanges KernSmooth lattice MASS methylumi mgcv nleqslv preprocessCore RSQLite]; }; - m6Aboost = derive2 { name="m6Aboost"; version="1.8.0"; sha256="0sssf37pjnn4iafhf6jkcms00lzwmxb8qbzn76spm135fkyljm7k"; depends=[adabag Biostrings BSgenome dplyr ExperimentHub GenomicRanges IRanges rtracklayer S4Vectors]; }; - mBPCR = derive2 { name="mBPCR"; version="1.56.0"; sha256="03h1wxjhvk19rrl9h8hpp78c9srxablv9sx6vjm868w12az4x0qh"; depends=[Biobase GWASTools oligoClasses]; }; - mCSEA = derive2 { name="mCSEA"; version="1.22.0"; sha256="1icvd7v8zhp420wq3776lixf7hzjwyfhc9h3micl4cg8hxz0r8kc"; depends=[biomaRt fgsea GenomicFeatures GenomicRanges ggplot2 Gviz Homo_sapiens IRanges limma mCSEAdata S4Vectors SummarizedExperiment]; }; - maCorrPlot = derive2 { name="maCorrPlot"; version="1.72.0"; sha256="0gpj4r9fnv4dlqkzyq47n0n9dwzd9d6ry46vzxlkdjla811wz3pb"; depends=[lattice]; }; - maPredictDSC = derive2 { name="maPredictDSC"; version="1.40.0"; sha256="099pmf3jdpnsvcg46q09pr2qdh0znzr2dcrlbh61ys1yh12vplf5"; depends=[affy AnnotationDbi caret class e1071 gcrma hgu133plus2_db limma LungCancerACvsSCCGEO MASS ROC ROCR]; }; - maSigPro = derive2 { name="maSigPro"; version="1.74.0"; sha256="02i2gnfj54z8j4ir93ambf25wz609aqh22bkwid0wca895nrarx8"; depends=[Biobase MASS mclust venn]; }; - macat = derive2 { name="macat"; version="1.76.0"; sha256="1xmlh1bnhaxp2zjimrhyzz0ldl2sv4j0lrrvqdhlk8jbm5j4hzy8"; depends=[annotate Biobase]; }; - made4 = derive2 { name="made4"; version="1.76.0"; sha256="03fhiszlmjh8nvz3gppf45r9kpcjrdb601ar17c4f2aygjpkf0cg"; depends=[ade4 Biobase gplots RColorBrewer scatterplot3d SummarizedExperiment]; }; - maftools = derive2 { name="maftools"; version="2.18.0"; sha256="025wlqnx13ldzyrf72mrfj492d62i4xyjbhpmgavgld0jwfmr3ga"; depends=[data_table DNAcopy RColorBrewer Rhtslib survival zlibbioc]; }; - magpie = derive2 { name="magpie"; version="1.2.0"; sha256="0qn62kllwd2ip2iszvxwr8088n5r0krnja80gw1xhfzs6s2gxcbi"; depends=[AnnotationDbi aod BiocParallel DESeq2 GenomicFeatures GenomicRanges IRanges Matrix matrixStats openxlsx RColorBrewer reshape2 Rsamtools rtracklayer S4Vectors TRESS]; }; - magrene = derive2 { name="magrene"; version="1.4.0"; sha256="0y3q5pdvcp1ns00ycmqilf9fbgl57j9917vck7anib9sqkbdncgf"; depends=[BiocParallel]; }; - makecdfenv = derive2 { name="makecdfenv"; version="1.78.0"; sha256="0mggcw0390i1y2wn4k8570gjmbsx6hbipi8fkhz2zj9icsx89x1l"; depends=[affy affyio Biobase zlibbioc]; }; - mapscape = derive2 { name="mapscape"; version="1.26.0"; sha256="157xi3r5fjsby2affd5yq112i6w80g8q3xiv4s7xg6zy57309f4k"; depends=[base64enc htmlwidgets jsonlite stringr]; }; - mariner = derive2 { name="mariner"; version="1.2.0"; sha256="12zj4y6fy38r6iiz7gp9z9sdz99ixy43is9hwp4l026q401ckdqh"; depends=[abind assertthat BiocGenerics BiocManager BiocParallel colourvalues data_table dbscan DelayedArray GenomeInfoDb GenomicRanges glue HDF5Array InteractionSet IRanges magrittr plotgardener plyranges progress purrr RColorBrewer rhdf5 rlang S4Vectors strawr SummarizedExperiment]; }; - marr = derive2 { name="marr"; version="1.12.0"; sha256="1q9xbyc9wsrhpirddnhpnw0z33cpjzj3689vgpnxdkx9s64jr1ld"; depends=[dplyr ggplot2 magrittr Rcpp rlang S4Vectors SummarizedExperiment]; }; - marray = derive2 { name="marray"; version="1.80.0"; sha256="1gj4mdbni5fk2z3zrk2cnhy610ihhhwjb9l1crglkklwxhkqlkvd"; depends=[limma]; }; - martini = derive2 { name="martini"; version="1.22.0"; sha256="0ffpbn93jlig43m0gzfi0vgqr6kn013xbsfgd8wlpg34saz3x1y4"; depends=[igraph Matrix memoise Rcpp RcppEigen snpStats]; }; - maser = derive2 { name="maser"; version="1.20.0"; sha256="0h7x1fyfvnjc30w9ydbnlqijz58q2kcxv4yy784rf4adsrdhwh45"; depends=[BiocGenerics data_table dplyr DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges reshape2 rtracklayer]; }; - maskBAD = derive2 { name="maskBAD"; version="1.46.0"; sha256="11kr4ali92scgsfm6757ylmvcvxsxvgh7pdlj77bwprgvsl53x5y"; depends=[affy gcrma]; }; - massiR = derive2 { name="massiR"; version="1.38.0"; sha256="16v0fydncmaa4xqg2m6mg1h5n9b3fc3r9mmxl1ip7ylr836v2g5l"; depends=[Biobase cluster diptest gplots]; }; - mastR = derive2 { name="mastR"; version="1.2.3"; sha256="0870g11mk90v1gh1cp37x93kqhb93jjnfis1qfhny194340v3c28"; depends=[AnnotationDbi Biobase dplyr edgeR ggplot2 ggpubr GSEABase limma Matrix msigdb org_Hs_eg_db patchwork SeuratObject SingleCellExperiment SummarizedExperiment tidyr]; }; - matchBox = derive2 { name="matchBox"; version="1.44.0"; sha256="185idvl851zsdh10f6dz8sff5anxq8apmf7awg9vq0j8mrpd149i"; depends=[]; }; - matter = derive2 { name="matter"; version="2.4.1"; sha256="08sgag1x5krwbknd45q4s9pj1dlsq1w50i8iw6imgrid2484q14c"; depends=[biglm BiocGenerics BiocParallel digest irlba Matrix ProtGenerics]; }; - mbQTL = derive2 { name="mbQTL"; version="1.2.0"; sha256="01j7mrjdgf5pv8599a08wq2bnpzxg7k6jm7s1vpnragssp4ml7jh"; depends=[broom dplyr ggplot2 MatrixEQTL metagenomeSeq pheatmap readxl stringr tidyr]; }; - mbkmeans = derive2 { name="mbkmeans"; version="1.18.0"; sha256="1x7azijfs28iz2w40b9hnpgwh4jxgihl8cj6h91b2wgz79sq649l"; depends=[beachmat benchmarkme BiocParallel ClusterR DelayedArray Matrix Rcpp RcppArmadillo Rhdf5lib S4Vectors SingleCellExperiment SummarizedExperiment]; }; - mdp = derive2 { name="mdp"; version="1.22.0"; sha256="0zislz6737kddhcz5chns12p8aaqybmg7gyww1n1f3zhy1m9rfzx"; depends=[ggplot2 gridExtra]; }; - mdqc = derive2 { name="mdqc"; version="1.64.0"; sha256="0q6ig9qdf2s9329wysrvgh13yq5c7n76as2c3mahqm78xb0mpplf"; depends=[cluster MASS]; }; - megadepth = derive2 { name="megadepth"; version="1.12.0"; sha256="0g9d4q6vh2ys1la15fqgbc4ckfbjbzzaqa49x9liqrhpnrp59vc3"; depends=[cmdfun dplyr fs GenomicRanges magrittr readr xfun]; }; - memes = derive2 { name="memes"; version="1.10.0"; sha256="11c7smsggxrg3v0awkx9j4gy8gr986yncqcqr01xjldzvz0b2r25"; depends=[Biostrings cmdfun dplyr GenomicRanges ggplot2 ggseqlogo magrittr matrixStats patchwork processx purrr readr rlang tibble tidyr universalmotif usethis xml2]; }; - meshes = derive2 { name="meshes"; version="1.28.0"; sha256="0l1l679qjpf5i8d86rmlziam1x67pnymj1iqcmbci20rqr415i3j"; depends=[AnnotationDbi AnnotationHub DOSE enrichplot GOSemSim MeSHDbi yulab_utils]; }; - meshr = derive2 { name="meshr"; version="2.8.0"; sha256="10ss1ydyxwiijq3212lswzwfhy1d5mdmgbjfaj8gdnvznnxfzs6l"; depends=[BiocGenerics BiocStyle Category fdrtool knitr markdown MeSHDbi rmarkdown RSQLite S4Vectors]; }; - messina = derive2 { name="messina"; version="1.38.0"; sha256="09c5jrxis9iza5lp7m3k4q4vwy4jlvl6vzd52nvayx8mbk5jcf2f"; depends=[foreach ggplot2 plyr Rcpp survival]; }; - metaCCA = derive2 { name="metaCCA"; version="1.30.0"; sha256="1mxybpdqmg9w3q36g0xwx4vl006v5nfgj7cmfjm9r1khka8vij13"; depends=[]; }; - metaMS = derive2 { name="metaMS"; version="1.38.0"; sha256="0l3fi4gp77a8vbhi3k5syaz0ycr9f3ch0dkqripbq8sw076cdh2r"; depends=[BiocGenerics CAMERA Matrix robustbase xcms]; }; - metaSeq = derive2 { name="metaSeq"; version="1.42.0"; sha256="1xvlyg83jd0ykb3c3kvm05s9919bsmc6v324n3da231c2vpyzl0n"; depends=[NOISeq Rcpp snow]; }; - metabCombiner = derive2 { name="metabCombiner"; version="1.12.0"; sha256="1iiizafp002xdy4lyj6h26izn1jmcydrw0h61c4i6n60fmaksjdq"; depends=[caret dplyr matrixStats mgcv rlang S4Vectors tidyr]; }; - metabinR = derive2 { name="metabinR"; version="1.4.0"; sha256="0i9kg4ca7l66zljydl9v6aa07rzwp3nq9cagm8dniq54qm59s93l"; depends=[rJava]; }; - metabolomicsWorkbenchR = derive2 { name="metabolomicsWorkbenchR"; version="1.12.0"; sha256="1fgciy2phpvv1jki47cijpcdfjpw92isj424wxn1ld3r7q4kn4b3"; depends=[data_table httr jsonlite MultiAssayExperiment struct SummarizedExperiment]; }; - metabomxtr = derive2 { name="metabomxtr"; version="1.36.0"; sha256="130zh8r7cpgwp15nk98ymj734q24aa6aakqyvxra3nmn82d0fi4w"; depends=[Biobase BiocParallel Formula ggplot2 multtest optimx plyr]; }; - metagene2 = derive2 { name="metagene2"; version="1.18.0"; sha256="1w4k4hhs28n2yjp2i96550zfiz6f679nkad3n2i4gm54yz42z4a0"; depends=[BiocParallel data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr purrr R6 reshape2 Rsamtools rtracklayer]; }; - metagenomeSeq = derive2 { name="metagenomeSeq"; version="1.43.0"; sha256="1m19qkwrbfr4yhbr1izfjka3brn1qasqql6alczv55l5h52m4s4b"; depends=[Biobase foreach glmnet gplots limma Matrix matrixStats RColorBrewer Wrench]; }; - metahdep = derive2 { name="metahdep"; version="1.60.0"; sha256="0hd91zd99c0dkzw419p3m8dyy1fm6ivg9ba654acqz5zxiav1agv"; depends=[]; }; - metapod = derive2 { name="metapod"; version="1.10.1"; sha256="05cy3xvj78n2p9l2pxfys7aczr51gm2ywprn4qmzr7ppb6rq5f66"; depends=[Rcpp]; }; - metapone = derive2 { name="metapone"; version="1.8.0"; sha256="14038jfkyh2hgqdmii3nfwfj7idy1sqm5ac3lczn480lzf90frjg"; depends=[BiocParallel fdrtool fgsea fields ggplot2 ggrepel markdown]; }; - metaseqR2 = derive2 { name="metaseqR2"; version="1.14.0"; sha256="1sg9a8v6ij6g3xmr55xngaj2l2y6zcf56gz17mzqpkgx0jfq1465"; depends=[ABSSeq Biobase BiocGenerics BiocParallel biomaRt Biostrings corrplot DESeq2 DSS DT EDASeq edgeR genefilter GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gplots harmonicmeanp heatmaply htmltools httr IRanges jsonlite lattice limma locfit log4r magrittr MASS Matrix NBPSeq pander qvalue rmarkdown rmdformats Rsamtools RSQLite rtracklayer S4Vectors stringr SummarizedExperiment survcomp VennDiagram vsn yaml zoo]; }; - methInheritSim = derive2 { name="methInheritSim"; version="1.24.0"; sha256="11sgw15dc0dl4wx3z5wwsk4qdccd91hjg66i1rwhcf1v08xw2w8w"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges methylKit msm S4Vectors]; }; - methimpute = derive2 { name="methimpute"; version="1.24.0"; sha256="0sdvxbkivkpsg22s4vxhds9z8m5nxrsn8khcv04jm3cf8x1zzvqn"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges ggplot2 IRanges minpack_lm Rcpp reshape2]; }; - methrix = derive2 { name="methrix"; version="1.16.0"; sha256="1yydmp3iaxbny25mfr3018f1kjvqi6zhrh0c8hvzznbkvyxvgkn2"; depends=[BSgenome data_table DelayedArray DelayedMatrixStats GenomicRanges ggplot2 HDF5Array IRanges matrixStats rtracklayer S4Vectors SummarizedExperiment]; }; - methylCC = derive2 { name="methylCC"; version="1.16.0"; sha256="1grb6d83gi4583jzg12wqkgr1dp2bxysdwd4lirzvnvhpwnfmbhw"; depends=[Biobase bsseq bumphunter dplyr FlowSorted_Blood_450k genefilter GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IRanges magrittr minfi plyranges quadprog S4Vectors]; }; - methylGSA = derive2 { name="methylGSA"; version="1.20.0"; sha256="037wfcdva8jqfrmy7kkdzp74izw2lgnawhg5576p66qvp1fwf2gi"; depends=[AnnotationDbi BiocParallel clusterProfiler ggplot2 GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 missMethyl org_Hs_eg_db reactome_db RobustRankAggreg shiny stringr]; }; - methylInheritance = derive2 { name="methylInheritance"; version="1.26.0"; sha256="0aiv9cy2fg5vgnkihqyyp9476d36n7spyfbvq8cnhhhka7q771iy"; depends=[BiocParallel GenomicRanges ggplot2 gridExtra IRanges methylKit rebus S4Vectors]; }; - methylKit = derive2 { name="methylKit"; version="1.28.0"; sha256="0y45wa45kblm2g3nylvybvyfc34sjlynhsz3dirhs1favb83sdiv"; depends=[data_table emdbook fastseg GenomeInfoDb GenomicRanges gtools IRanges KernSmooth limma mclust mgcv qvalue R_utils Rcpp Rhtslib Rsamtools rtracklayer S4Vectors zlibbioc]; }; - methylMnM = derive2 { name="methylMnM"; version="1.40.0"; sha256="0nbn6xdv8wcs7bxaym2nc3ryhjj574pamm66yc3blx413q5wfsnq"; depends=[edgeR statmod]; }; - methylPipe = derive2 { name="methylPipe"; version="1.36.0"; sha256="1ayy6jf0jrd2lk16j3a7k3qnm8h8w76bkb7gsvx1bbchsk050880"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; }; - methylSig = derive2 { name="methylSig"; version="1.14.0"; sha256="1v8pfv5c7i9r1vrrbdi75w79gazq4qma4wpgzq1bhba3pjh8w1bc"; depends=[bsseq DelayedArray DelayedMatrixStats DSS GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - methylclock = derive2 { name="methylclock"; version="1.8.0"; sha256="1njym21ndva58kg7gqfw1d7ri4421rilflg1kn8hbgyayjrlhcl1"; depends=[Biobase devtools dplyr dynamicTreeCut ExperimentHub ggplot2 ggpmisc ggpubr gridExtra impute methylclockData minfi PerformanceAnalytics planet preprocessCore quadprog Rcpp RPMM tibble tidyr tidyverse]; }; - methylscaper = derive2 { name="methylscaper"; version="1.10.0"; sha256="1akigwx3k0xdnq70219qg69nvmshbryq0z6glq1dz2wic4gghdlw"; depends=[BiocParallel Biostrings data_table Rfast seqinr seriation shiny shinyFiles shinyjs SummarizedExperiment]; }; - methylumi = derive2 { name="methylumi"; version="2.48.0"; sha256="1vracrvy56kk3hc9midxdaxhad2zf1lspn0zzxjjbsyzx3r0ip0n"; depends=[annotate AnnotationDbi Biobase BiocGenerics FDb_InfiniumMethylation_hg19 genefilter GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; }; - mfa = derive2 { name="mfa"; version="1.24.0"; sha256="0h8qsl62zqn0d2mwxqn246khdfay85alf6p39yp94qv90kvgp62f"; depends=[Biobase coda dplyr ggmcmc ggplot2 magrittr MCMCglmm MCMCpack Rcpp tibble]; }; - mgsa = derive2 { name="mgsa"; version="1.50.0"; sha256="130d3k6m78k67qikwzisabqdmb9s2z5d2dypv8ia0lhyp77yk8b9"; depends=[gplots]; }; - miQC = derive2 { name="miQC"; version="1.10.0"; sha256="131pnlkk72b4x42aij8bwq8rknfxk0hz1lj6rlvgy2w95fbs12g0"; depends=[flexmix ggplot2 SingleCellExperiment]; }; - miRLAB = derive2 { name="miRLAB"; version="1.32.0"; sha256="18rhi4bk1rxnsdbrgnyqdrs4h4nbvb7ndvz4rz8mgj1f2nnr1fc5"; depends=[Category ctc dplyr energy entropy glmnet GOstats gplots Hmisc httr impute InvariantCausalPrediction limma org_Hs_eg_db pcalg RCurl stringr SummarizedExperiment TCGAbiolinks]; }; - miRNAmeConverter = derive2 { name="miRNAmeConverter"; version="1.30.0"; sha256="1ndd80xsq7qjgmn738nf5vhz68mxni1waah6iwd57iiyl45fkj29"; depends=[AnnotationDbi DBI miRBaseVersions_db reshape2]; }; - miRNApath = derive2 { name="miRNApath"; version="1.62.0"; sha256="1rmhx8qb9lk67icacsl5klvl16rkdlpln1pahdjn2rcnn0j4ry59"; depends=[]; }; - miRNAtap = derive2 { name="miRNAtap"; version="1.36.0"; sha256="1jc9xlhfp8pcnrrrgf7pdzgfz6sl617czv6mp74ydsnl0yc33hnj"; depends=[AnnotationDbi DBI plyr RSQLite sqldf stringr]; }; - miRcomp = derive2 { name="miRcomp"; version="1.32.0"; sha256="04qpmxj75fh7g67vw5vp79aj5b4n4ppm228ykah5pnpk0swf4kpm"; depends=[Biobase KernSmooth miRcompData]; }; - mia = derive2 { name="mia"; version="1.10.0"; sha256="044spfxsf7xijnbh0933cwdkycmg05zsfqhbx5pkfajysh6w5cxp"; depends=[ape BiocGenerics BiocParallel Biostrings bluster DECIPHER decontam DelayedArray DelayedMatrixStats DirichletMultinomial dplyr IRanges MASS MatrixGenerics MultiAssayExperiment rlang S4Vectors scater scuttle SingleCellExperiment SummarizedExperiment tibble tidyr TreeSummarizedExperiment vegan]; }; - miaSim = derive2 { name="miaSim"; version="1.8.0"; sha256="1k53d71jpm3a8vd5f5b0s2v7d722k3jvay2g782p28i73q77scxk"; depends=[deSolve MatrixGenerics poweRlaw S4Vectors SummarizedExperiment TreeSummarizedExperiment]; }; - miaViz = derive2 { name="miaViz"; version="1.10.0"; sha256="1i6ihx6r33lg0cw7k0mhzygsglfzwvmvwi49ilc32lh3lflqqksp"; depends=[ape BiocGenerics BiocParallel DelayedArray DirichletMultinomial dplyr ggnewscale ggplot2 ggraph ggrepel ggtree mia purrr rlang S4Vectors scater SingleCellExperiment SummarizedExperiment tibble tidygraph tidyr tidytree TreeSummarizedExperiment viridis]; }; - microRNA = derive2 { name="microRNA"; version="1.60.0"; sha256="0sn8a95yjvr7vn2imvymlfpldqrsd25c7p1q64ihhkvz4kbjb1zv"; depends=[Biostrings]; }; - microSTASIS = derive2 { name="microSTASIS"; version="1.2.0"; sha256="0rm202xdjr24521sw004w7fk0p325dwxiykyx90d6dif9xjrg94w"; depends=[BiocParallel ggplot2 ggside rlang stringr TreeSummarizedExperiment]; }; - microbiome = derive2 { name="microbiome"; version="1.24.0"; sha256="0xmkwf7v89nwlpjrzqxv87lbsn6za99v7f0yxkgzfk5n6fadrf05"; depends=[Biostrings compositions dplyr ggplot2 phyloseq reshape2 Rtsne scales tibble tidyr vegan]; }; - microbiomeDASim = derive2 { name="microbiomeDASim"; version="1.16.0"; sha256="1wc15hymh7vzdxd6pxwdlxikpppdyi1pgjc0vmj7wa3y4d11v0pk"; depends=[Biobase ggplot2 MASS Matrix metagenomeSeq mvtnorm pbapply phyloseq tmvtnorm]; }; - microbiomeExplorer = derive2 { name="microbiomeExplorer"; version="1.12.0"; sha256="0byy4r5fhvhwnlxnhb0gbiskjq2q3gj3ibh4anlxpzv55q4shrsd"; depends=[Biobase biomformat broom car DESeq2 dplyr DT forcats heatmaply knitr limma lubridate magrittr matrixStats metagenomeSeq plotly purrr RColorBrewer readr reshape2 rlang rmarkdown shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr tibble tidyr vegan]; }; - microbiomeMarker = derive2 { name="microbiomeMarker"; version="1.8.0"; sha256="15qsal51b29ryxvjvfqwx7xh525cg3scv7kn6fh9rwdpi97hx7ff"; depends=[ALDEx2 ANCOMBC Biobase BiocGenerics BiocParallel biomformat Biostrings caret coin ComplexHeatmap DESeq2 dplyr edgeR ggplot2 ggsignif ggtree IRanges limma magrittr MASS metagenomeSeq multtest patchwork phyloseq plotROC pROC purrr rlang S4Vectors tibble tidyr tidytree vegan yaml]; }; - midasHLA = derive2 { name="midasHLA"; version="1.10.0"; sha256="02971sczxayglv6fa5yc8gx9w8r6vxsyc29qv1is7jj0yr14dq27"; depends=[assertthat broom dplyr formattable HardyWeinberg kableExtra knitr magrittr MultiAssayExperiment qdapTools rlang S4Vectors stringi SummarizedExperiment tibble]; }; - miloR = derive2 { name="miloR"; version="1.10.0"; sha256="1hnvw9x0xwjb0br4yvzkzn73nvm8p3j3wmcw8jrid105j0fz6vcj"; depends=[BiocGenerics BiocNeighbors BiocParallel BiocSingular cowplot dplyr edgeR ggbeeswarm ggplot2 ggraph ggrepel gtools igraph irlba limma Matrix matrixStats patchwork RColorBrewer S4Vectors SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; }; - mimager = derive2 { name="mimager"; version="1.26.0"; sha256="00qwk5gbrgwsz1hdn3kj3pc8jn20ljlcz43cqan8x9ffkhj4axhh"; depends=[affy affyPLM Biobase BiocGenerics DBI gtable oligo oligoClasses preprocessCore S4Vectors scales]; }; - mina = derive2 { name="mina"; version="1.10.0"; sha256="07znbjz4rcs478crp3yyawg06g6z8181arj1kmhs70id687lh0l8"; depends=[apcluster biganalytics bigmemory foreach ggplot2 Hmisc MCL parallelDist plyr Rcpp RcppArmadillo RcppParallel reshape2 RSpectra stringr]; }; - minet = derive2 { name="minet"; version="3.60.0"; sha256="17v2x7cyw74h0zfsz33pyl1kqk976pdzw7mrgprz9l7w5120niw5"; depends=[infotheo]; }; - minfi = derive2 { name="minfi"; version="1.48.0"; sha256="13lldzj68vmmmrp5fi2rfxbchbivaa1scq56hl0v9mxxicw72a0x"; depends=[beanplot Biobase BiocGenerics BiocParallel Biostrings bumphunter data_table DelayedArray DelayedMatrixStats genefilter GenomeInfoDb GenomicRanges GEOquery HDF5Array illuminaio IRanges lattice limma MASS mclust nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; }; - mirIntegrator = derive2 { name="mirIntegrator"; version="1.32.0"; sha256="1wpdyk97ca0jw8k6n11cy1imy2y3s15hvdv068sp87bapjzfj2fi"; depends=[AnnotationDbi ggplot2 graph org_Hs_eg_db Rgraphviz ROntoTools]; }; - mirTarRnaSeq = derive2 { name="mirTarRnaSeq"; version="1.10.0"; sha256="0lfx1vp689nvmjz2c5sfdy8ww36nrcnjmliv0d7440bc1rk4lywl"; depends=[assertthat caTools corrplot data_table dplyr ggplot2 MASS pheatmap pscl purrr R_utils reshape2 viridis]; }; - missMethyl = derive2 { name="missMethyl"; version="1.36.0"; sha256="1nv4rm5pbx0s7m5zak3jzmwz4pkf8ghkj0ckdcsnmw3k364ny856"; depends=[AnnotationDbi BiasedUrn Biobase BiocGenerics GenomicRanges GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest IRanges limma methylumi minfi org_Hs_eg_db ruv S4Vectors statmod stringr SummarizedExperiment]; }; - missRows = derive2 { name="missRows"; version="1.22.0"; sha256="13xfzfi6xvcjb7i3dvd606vs1l2dwj2srxfqs26prc6qz064qjpy"; depends=[ggplot2 gtools MultiAssayExperiment plyr S4Vectors]; }; - mistyR = derive2 { name="mistyR"; version="1.10.0"; sha256="128ggdhsm9d1sslahvzzhqb73s16vf7474sxc9lcajy5l4m3rw7k"; depends=[assertthat caret deldir digest distances dplyr filelock furrr ggplot2 purrr R_utils ranger readr ridge rlang rlist stringr tibble tidyr tidyselect withr]; }; - mitch = derive2 { name="mitch"; version="1.14.0"; sha256="0i64zzr04zpl3rcm93sl5bhwfam3n378p4frgqrgypm21aycisx2"; depends=[beeswarm echarts4r GGally ggplot2 gplots gridExtra kableExtra knitr MASS plyr reshape2 rmarkdown]; }; - mitoClone2 = derive2 { name="mitoClone2"; version="1.8.1"; sha256="18zkfnz099p4xh8qkxc2xj75ndraby8ycz6dfq281ly6inyd58r6"; depends=[deepSNV GenomicRanges ggplot2 pheatmap reshape2 Rhtslib S4Vectors]; }; - mixOmics = derive2 { name="mixOmics"; version="6.26.0"; sha256="0ifi89s611kblncnpvsrbl6sq2zi36binz63njrhya9wkyaxj6pc"; depends=[BiocParallel corpcor dplyr ellipse ggplot2 ggrepel gridExtra igraph lattice MASS matrixStats rARPACK RColorBrewer reshape2 tidyr]; }; - mnem = derive2 { name="mnem"; version="1.18.0"; sha256="1p6da0jl3c9yx68bzc41z3xry8vf399fzinf01c20yfql4g17c07"; depends=[cluster data_table e1071 flexclust ggplot2 graph lattice Linnorm matrixStats naturalsort Rcpp RcppEigen Rgraphviz snowfall tsne wesanderson]; }; - moanin = derive2 { name="moanin"; version="1.10.0"; sha256="1k9m0q1bpbdpb2hm57y0lygx1mj0q1xh30x9sz7s5q9fpnabybrh"; depends=[ClusterR edgeR limma MASS matrixStats NMI reshape2 S4Vectors SummarizedExperiment topGO viridis zoo]; }; - mogsa = derive2 { name="mogsa"; version="1.36.0"; sha256="0byq6cq9hs4ryhhx6i1ll8cr3i1072ifp9v98p3xvcgfaqig6ydw"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; }; - monaLisa = derive2 { name="monaLisa"; version="1.8.0"; sha256="1gk1h6z84ybmxl856mmyvxm7434aq1sh8bbl35if7awzkj436hkr"; depends=[BiocGenerics BiocParallel Biostrings BSgenome circlize ComplexHeatmap GenomeInfoDb GenomicRanges glmnet IRanges S4Vectors stabs SummarizedExperiment TFBSTools vioplot XVector]; }; - monocle = derive2 { name="monocle"; version="2.30.0"; sha256="0i1qnmiaf3gf8955nlqzd81xzg4siliq154k699jmsz0fyyykia1"; depends=[Biobase BiocGenerics biocViews cluster combinat DDRTree dplyr fastICA ggplot2 HSMMSingleCell igraph irlba leidenbase limma MASS Matrix matrixStats pheatmap plyr proxy RANN Rcpp reshape2 Rtsne slam stringr tibble VGAM viridis]; }; - mosaics = derive2 { name="mosaics"; version="2.40.0"; sha256="1si5f9w7jfdnfspnwghny78gdc4xbbq1gaiia2yl43v9236fk6q5"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges lattice MASS Rcpp Rsamtools S4Vectors]; }; - mosbi = derive2 { name="mosbi"; version="1.8.0"; sha256="1vpkkc4c35plalah133fy5wfga8j2qrl53q7086x40812mpmc1yc"; depends=[akmbiclust BH biclust fabia igraph isa2 QUBIC RColorBrewer Rcpp RcppParallel xml2]; }; - motifStack = derive2 { name="motifStack"; version="1.46.0"; sha256="10hmqwkysifd59as9zx00p3gj595lwj30ywn9pqb1920q6f5mx2i"; depends=[ade4 Biostrings ggplot2 htmlwidgets TFBSTools XML]; }; - motifbreakR = derive2 { name="motifbreakR"; version="2.16.0"; sha256="02i3hkffhhsbzmn97mv8wc2px5caq9xnp45z0l53dp1jxbmms1h0"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges Gviz IRanges matrixStats MotifDb motifStack rtracklayer S4Vectors stringr SummarizedExperiment TFMPvalue VariantAnnotation]; }; - motifcounter = derive2 { name="motifcounter"; version="1.26.0"; sha256="0ng283g3shm2aahyjn29mxv3f30xfncc8gg99wchzcrlm5cgwpy7"; depends=[Biostrings]; }; - motifmatchr = derive2 { name="motifmatchr"; version="1.24.0"; sha256="13kkg9xpyvgqpsaz5f96pd43i8a45jrbnzqmax793zkv4ai8p16j"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment TFBSTools]; }; - mpra = derive2 { name="mpra"; version="1.24.0"; sha256="0zadlalkswj0793b66fs6cxincnhn245xdkz32ngcahqdfiv7kbq"; depends=[BiocGenerics limma S4Vectors scales statmod SummarizedExperiment]; }; - msImpute = derive2 { name="msImpute"; version="1.12.0"; sha256="1akrn8k8k1s69gq2gpn1dw206cjd5xry3q2cfvhmxca8nhs7zpb0"; depends=[data_table dplyr FNN limma matrixStats mvtnorm pdist reticulate scran softImpute tidyr]; }; - msPurity = derive2 { name="msPurity"; version="1.28.0"; sha256="14klzkpii892yn08kg9hwkwiprfrpfgn4dj52dyw8k4k30vri3gw"; depends=[DBI dbplyr doSNOW dplyr fastcluster foreach ggplot2 magrittr mzR plyr Rcpp reshape2 RSQLite stringr]; }; - msa = derive2 { name="msa"; version="1.34.0"; sha256="1csa8j64xrfr6kdnndr3876bplclca9wf6ydy9kg97xsjq7gz8q5"; depends=[BiocGenerics Biostrings IRanges Rcpp S4Vectors]; }; - msgbsR = derive2 { name="msgbsR"; version="1.26.0"; sha256="0m88mpr74r531gs8nlicr5bp8d4qyj7449mdn6pzkqpvx10ncrf6"; depends=[BSgenome easyRNASeq edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr R_utils Rsamtools S4Vectors SummarizedExperiment]; }; - mslp = derive2 { name="mslp"; version="1.4.0"; sha256="1i4afr1kvbwpp4xnijhdqhmn4cy82b8j97by50gwm63696g7qr6k"; depends=[data_table doRNG fmsb foreach magrittr org_Hs_eg_db pROC randomForest RankProd]; }; - msmsEDA = derive2 { name="msmsEDA"; version="1.40.0"; sha256="0xxjkr3x654n61q2yda09cghvssyx4ml9g22gfzfhbzjp8j7pm2c"; depends=[gplots MASS MSnbase RColorBrewer]; }; - msmsTests = derive2 { name="msmsTests"; version="1.40.0"; sha256="0dif4yvm9hfrnamjph5xa9cbf41f2v8lbgyr88f11alwwbf0dg69"; depends=[edgeR msmsEDA MSnbase qvalue]; }; - msqrob2 = derive2 { name="msqrob2"; version="1.10.0"; sha256="1g2a01cxjmfbjhx0rr2dq1wl8vq9llhpyq8qwn36jz6s0k32b2f5"; depends=[BiocParallel codetools limma lme4 MASS Matrix MultiAssayExperiment purrr QFeatures SummarizedExperiment]; }; - multiClust = derive2 { name="multiClust"; version="1.32.0"; sha256="0lmnmh365dzk50klcgi1fqkhk7myjcvmkc29vwzs56ljd2zlw0hm"; depends=[amap cluster ctc dendextend mclust survival]; }; - multiGSEA = derive2 { name="multiGSEA"; version="1.12.0"; sha256="0p9x69ybwss3bdsym78ajlkwx7vgj4nfvyig9drij524r90kfpd8"; depends=[AnnotationDbi dplyr fgsea graphite magrittr metaboliteIDmapping metap rappdirs rlang]; }; - multiHiCcompare = derive2 { name="multiHiCcompare"; version="1.20.0"; sha256="152h62f41r2lay2zpnllsfamy0m63w5bi5gnyy7q32rhmq9z2k3b"; depends=[aggregation BiocParallel data_table dplyr edgeR GenomeInfoDb GenomeInfoDbData GenomicRanges HiCcompare pbapply pheatmap qqman]; }; - multiMiR = derive2 { name="multiMiR"; version="1.24.0"; sha256="0mxih9nfjmgq3zd2c08ahwhnx3ahynj9phyrii6chllm3jcsfx15"; depends=[AnnotationDbi BiocGenerics dplyr purrr RCurl tibble XML]; }; - multiWGCNA = derive2 { name="multiWGCNA"; version="1.0.0"; sha256="1jp8amw31l45b2h9b138rmbzc43xx2swfs5pnlqladnnzwsbxvn3"; depends=[cowplot data_table dcanr dplyr flashClust ggalluvial ggplot2 ggrepel igraph patchwork readr reshape2 scales stringr SummarizedExperiment WGCNA]; }; - multicrispr = derive2 { name="multicrispr"; version="1.12.9"; sha256="1rqd4l7gh48kviy9r5g5v6iq36p1h3gid9f250ps3zygc809garm"; depends=[BiocGenerics Biostrings BSgenome CRISPRseek data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 karyoploteR magrittr plyranges Rbowtie reticulate rtracklayer stringi tidyr tidyselect]; }; - multiscan = derive2 { name="multiscan"; version="1.62.0"; sha256="09shs3hpa285v3hsbrncljxs02dm10qcbnnx9ss6b16gbs6d34wi"; depends=[Biobase]; }; - multtest = derive2 { name="multtest"; version="2.58.0"; sha256="0s8x2rg2xp6awg2cikybgxrxpi9f91jah7dskk5dnfkazd20di4j"; depends=[Biobase BiocGenerics MASS survival]; }; - mumosa = derive2 { name="mumosa"; version="1.10.0"; sha256="1mmhfy8lh1yd02vgw9bg32850sb5l875as8bv3xgq55c78ishlgv"; depends=[batchelor beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats igraph IRanges Matrix metapod S4Vectors ScaledMatrix scran scuttle SingleCellExperiment SummarizedExperiment uwot]; }; - muscat = derive2 { name="muscat"; version="1.16.0"; sha256="0vasr9rwnfjxbb3y2saq7gqzis5xyamgvns2rlywdxv1jm0nr8y3"; depends=[BiocParallel blme ComplexHeatmap data_table DESeq2 dplyr edgeR ggplot2 glmmTMB limma lme4 lmerTest Matrix matrixStats progress purrr S4Vectors scales scater sctransform scuttle SingleCellExperiment SummarizedExperiment variancePartition viridis]; }; - muscle = derive2 { name="muscle"; version="3.44.0"; sha256="0wmj0bjwr6lf7lp4bwnv94rwl2ibvdb50fwriiy742q1mm8b765x"; depends=[Biostrings]; }; - musicatk = derive2 { name="musicatk"; version="1.12.0"; sha256="0ql8lxc8148w8692w93v2c3x87zzy6m2v5df1krhsaswyl0anpkc"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 BSgenome_Mmusculus_UCSC_mm9 cluster ComplexHeatmap data_table decompTumor2Sig deconstructSigs dplyr factoextra GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel gridExtra gtools IRanges maftools magrittr MASS matrixTests MCMCprecision NMF philentropy plotly rlang S4Vectors shiny stringi stringr SummarizedExperiment tibble tidyr tidyverse topicmodels TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene uwot VariantAnnotation]; }; - mygene = derive2 { name="mygene"; version="1.38.0"; sha256="1a0jhcapr78yyx3z5dfsnz7bb9ahvnjq0qj9zzvdzyaxnzw0wvjm"; depends=[GenomicFeatures Hmisc httr jsonlite plyr S4Vectors sqldf]; }; - myvariant = derive2 { name="myvariant"; version="1.32.0"; sha256="0az7a7hg4xk0lrvnq3zk5zwyf8zdyby19xzwy73zzgqiaha0b245"; depends=[GenomeInfoDb Hmisc httr jsonlite magrittr plyr S4Vectors VariantAnnotation]; }; - mzID = derive2 { name="mzID"; version="1.40.0"; sha256="1rgkd9iv0lxj1zxh96sifwa312ivw5kl5jw82ma4fmapr4iqhzsh"; depends=[doParallel foreach iterators plyr ProtGenerics XML]; }; - mzR = derive2 { name="mzR"; version="2.36.0"; sha256="0z6ckp69syrdzhp6n4n399k2lar3w4n2d1ji2f90951c4ds6hkh8"; depends=[Biobase BiocGenerics ncdf4 ProtGenerics Rcpp Rhdf5lib]; }; - nanotatoR = derive2 { name="nanotatoR"; version="1.18.0"; sha256="1nnh4g4b7k6mp922pr52sxlrh6wvfyx7jhckmwrd12l1yjq010pb"; depends=[AnnotationDbi curl dplyr GenomicRanges hash httr knitr openxlsx org_Hs_eg_db rentrez rlang stringr testthat tidyverse XML]; }; - ncGTW = derive2 { name="ncGTW"; version="1.16.0"; sha256="1dlfdzxkjy9yihd3acpr4ynj1s4387xihscx5qz0r463fcz6kr1y"; depends=[BiocParallel Rcpp xcms]; }; - ncRNAtools = derive2 { name="ncRNAtools"; version="1.12.0"; sha256="13skjmd3v0ysc4hj3lr3f3i07dy6gqswr44mh0289cs0x65s1xis"; depends=[GenomicRanges ggplot2 httr IRanges S4Vectors xml2]; }; - ncdfFlow = derive2 { name="ncdfFlow"; version="2.48.0"; sha256="0z9vgd8v69iq8gv23iiaxrk77j2aq8y2n5k8x9jmxphbm0cm19a0"; depends=[BH Biobase BiocGenerics cpp11 flowCore Rhdf5lib zlibbioc]; }; - ndexr = derive2 { name="ndexr"; version="1.24.0"; sha256="1sm7j8jqpmvdbrmxys17cg8nyisjy39vi1b16c4kdcvb97b4r2vj"; depends=[httr jsonlite plyr RCX tidyr]; }; - nearBynding = derive2 { name="nearBynding"; version="1.12.0"; sha256="114saana5jbb0bkpnaw0f52pnic5p7gsixcl34jqw5q4pdzwfz5z"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicRanges ggplot2 gplots magrittr matrixStats plyranges R_utils rlang Rsamtools rtracklayer S4Vectors transport TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - nempi = derive2 { name="nempi"; version="1.10.0"; sha256="0z12kw9iihmcgq5hy4vl914d39ghba3dmlk01rwyj5gnkac233yf"; depends=[e1071 epiNEM matrixStats mnem naturalsort nnet randomForest]; }; - netDx = derive2 { name="netDx"; version="1.14.0"; sha256="0plq4fz6fjgcri6swpfbffpcim52r5qws6g9fb36s4y8fvpjarpw"; depends=[bigmemory BiocFileCache combinat doParallel foreach GenomeInfoDb GenomicRanges ggplot2 glmnet httr igraph IRanges MultiAssayExperiment plotrix pracma rappdirs RColorBrewer reshape2 ROCR Rtsne S4Vectors]; }; - netOmics = derive2 { name="netOmics"; version="1.8.0"; sha256="03nyjvcr2hldsfifj0dix1bc79z05i9x2hgc5z2g9hd1jyijljyd"; depends=[AnnotationDbi dplyr ggplot2 GO_db gprofiler2 igraph magrittr minet purrr RandomWalkRestartMH tibble tidyr]; }; - netSmooth = derive2 { name="netSmooth"; version="1.22.0"; sha256="1wkjpxk9aw1w65kxf07rw1aj64bg9c75rx88vxxrniq89iwfynwl"; depends=[cluster clusterExperiment data_table DelayedArray entropy HDF5Array Matrix scater SingleCellExperiment SummarizedExperiment]; }; - netZooR = derive2 { name="netZooR"; version="1.6.0"; sha256="1fkq1vrdflli3vq3m4p375z3n7s4wd62ah94sp5j6szhnrz4fybh"; depends=[AnnotationDbi assertthat Biobase data_table doParallel dplyr foreach ggdendro ggplot2 GO_db GOstats gplots igraph MASS Matrix matrixcalc matrixStats nnet org_Hs_eg_db pandaR penalized RCy3 reshape reshape2 reticulate STRINGdb tidyr vegan viridisLite yarn]; }; - netbiov = derive2 { name="netbiov"; version="1.36.0"; sha256="0igqb3wdxvjrbh4w664934yycac3qwcyfhmsz4cf2h5rif23xagf"; depends=[igraph]; }; - netboost = derive2 { name="netboost"; version="2.10.0"; sha256="1cmyh47d61saz2a47gp5a04kf5ajd2ghscm8lvrpichm1743hsm2"; depends=[BiocStyle colorspace dynamicTreeCut impute R_utils Rcpp RcppParallel WGCNA]; }; - nethet = derive2 { name="nethet"; version="1.34.0"; sha256="0js6vky7ilgz60kp62l3jh841lx4f1fdikklk0b3qa6fxvv6kshj"; depends=[CompQuadForm GeneNet ggm ggplot2 glasso glmnet GSA huge ICSNP limma mclust multtest mvtnorm network]; }; - netprioR = derive2 { name="netprioR"; version="1.28.0"; sha256="02hb9jxplby5yjghycfx9cd53b9kal5ma2hwllljfp0j7iv5cfwi"; depends=[doParallel dplyr foreach ggplot2 gridExtra Matrix pROC sparseMVN]; }; - netresponse = derive2 { name="netresponse"; version="1.62.0"; sha256="1sdmx9zah59p52sjay94zgpqbghsgx0gsgg25rdh5ayp3hy8n3z3"; depends=[BiocStyle ggplot2 graph igraph mclust minet plyr qvalue RColorBrewer reshape2 Rgraphviz rmarkdown]; }; - ngsReports = derive2 { name="ngsReports"; version="2.4.0"; sha256="0phlm6qsvd1kzk25678lr105srwvs3hvxksjg7jlq901vnl1bhdb"; depends=[BiocGenerics Biostrings checkmate dplyr DT forcats ggdendro ggplot2 jsonlite lifecycle lubridate pander patchwork plotly readr reshape2 rlang rmarkdown scales stringr tibble tidyr tidyselect zoo]; }; - nipalsMCIA = derive2 { name="nipalsMCIA"; version="1.0.0"; sha256="1jvbr9zxl1y0whdav26jx7fhlj4lp22pmjx8aa0id651nc76nsc3"; depends=[ComplexHeatmap dplyr fgsea ggplot2 MultiAssayExperiment pracma rlang RSpectra scales SummarizedExperiment]; }; - nnNorm = derive2 { name="nnNorm"; version="2.66.0"; sha256="0wf48cfmmp6dljsw1iw92avk1b76z0qv9wg8lr09xpcp61ahpjnn"; depends=[marray nnet]; }; - nnSVG = derive2 { name="nnSVG"; version="1.6.4"; sha256="02x043azyvz9kqgp3hh7avi4gcf1ywl3fpc630vl24rk9pn2rb6b"; depends=[BiocParallel BRISC Matrix matrixStats SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; - nondetects = derive2 { name="nondetects"; version="2.32.0"; sha256="0302mg5pbvbzp9rhm6wg4lfa7c7lkndysx35x8b1zskc4b1v76cv"; depends=[arm Biobase HTqPCR limma mvtnorm]; }; - normalize450K = derive2 { name="normalize450K"; version="1.30.0"; sha256="027j1pm3l5aq5wzzqfw6rxzwiw6ir7haxwb8jc9d0h4hi7csngiw"; depends=[Biobase illuminaio quadprog]; }; - normr = derive2 { name="normr"; version="1.28.0"; sha256="05xlqg5d5m3kd6mc8lnq7kg90bwwk5vb3d6c99pqnwr98mw5sm8k"; depends=[bamsignals GenomeInfoDb GenomicRanges IRanges qvalue Rcpp rtracklayer]; }; - npGSEA = derive2 { name="npGSEA"; version="1.38.0"; sha256="0m53l08fz5fsip9hc65cgabwd1xrpdj8fmywklsip467k4fw7zdw"; depends=[Biobase BiocGenerics GSEABase]; }; - nuCpos = derive2 { name="nuCpos"; version="1.20.0"; sha256="1qnmmxlabah0w4dpin4s02jzcwxk86djgal7m4s4fymh9gc3yi5q"; depends=[]; }; - nucleR = derive2 { name="nucleR"; version="2.34.0"; sha256="12jy9s03saxcmvbh82ip8r803j3bz8kkzvgs45zl4mqjv1gsf07p"; depends=[Biobase BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr Rsamtools S4Vectors ShortRead]; }; - nucleoSim = derive2 { name="nucleoSim"; version="1.30.0"; sha256="1a0fnx97q6fgfsnplw016xk0hq5vrn9sbk11rbfbwk58kx6jzfgg"; depends=[IRanges S4Vectors]; }; - nullranges = derive2 { name="nullranges"; version="1.8.0"; sha256="13k2ij87fw902w0f0322wk3xnjcbsnbfimvanvxxlnv0yr9d9nva"; depends=[data_table GenomeInfoDb GenomicRanges ggplot2 ggridges InteractionSet IRanges plyranges progress rlang S4Vectors scales]; }; - occugene = derive2 { name="occugene"; version="1.62.0"; sha256="04aw765wkp8j9cgl317bxvybhqnl85zn1gjzlx8n043i8jp915pn"; depends=[]; }; - octad = derive2 { name="octad"; version="1.4.0"; sha256="01fm8zz50phrnj1x69992zynv82xhh2zn1m7d0zax13mscsdyfbp"; depends=[AnnotationHub Biobase data_table DESeq2 dplyr EDASeq edgeR ExperimentHub foreach ggplot2 GSVA htmlwidgets httr limma magrittr octad_db plotly reshape2 Rfast rhdf5 RUVSeq S4Vectors]; }; - odseq = derive2 { name="odseq"; version="1.30.0"; sha256="07k7029s53wi02my3c492ihc0k8wrd6ninj97mkgbq7m20si3bid"; depends=[kebabs mclust msa]; }; - oligo = derive2 { name="oligo"; version="1.66.0"; sha256="0pqn5qslynylx235wknwj71a6j7xf5i6pb7wjm00jwrdbqwvdlp6"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; }; - oligoClasses = derive2 { name="oligoClasses"; version="1.64.0"; sha256="1gdvjvyjfpvvrqyj9rq1l4dnq00hr8vr8knnlb9gnjk21sbcf1d7"; depends=[affyio Biobase BiocGenerics BiocManager Biostrings DBI ff foreach GenomicRanges IRanges RSQLite S4Vectors SummarizedExperiment]; }; - omada = derive2 { name="omada"; version="1.4.0"; sha256="0nk6rsk8m4w32447adwz87vq5gnh8ymgzdqn4621hkwr123q85fx"; depends=[clValid diceR dplyr fpc genieclust ggplot2 glmnet kernlab pdfCluster Rcpp reshape]; }; - omicRexposome = derive2 { name="omicRexposome"; version="1.24.3"; sha256="0nzpqdcpcvf2qjzrzbj27n7b2hkz668829sj2jir9dc86mv8daya"; depends=[Biobase ggplot2 ggrepel gridExtra isva limma MultiDataSet omicade4 PMA rexposome SmartSVA stringr SummarizedExperiment sva]; }; - omicade4 = derive2 { name="omicade4"; version="1.42.0"; sha256="0i4ln95ayl1irr8sr3639x35ilysdi663kksw7g93q1ry91yav8r"; depends=[ade4 Biobase made4]; }; - omicplotR = derive2 { name="omicplotR"; version="1.22.0"; sha256="0zqzzb463656dn9lhnmbfzxyl4qj5hqcnyd5jrxrk88v5lyy0hb1"; depends=[ALDEx2 compositions DT jsonlite knitr matrixStats rmarkdown shiny vegan zCompositions]; }; - omicsPrint = derive2 { name="omicsPrint"; version="1.22.0"; sha256="0vax74j75id747ia0fy5zqvb0zb7bm8fmk3cysxlqlhzq8pbswhn"; depends=[MASS matrixStats MultiAssayExperiment RaggedExperiment SummarizedExperiment]; }; - omicsViewer = derive2 { name="omicsViewer"; version="1.6.0"; sha256="1madi9s3g6sfcd141rn7v7phm4bppbhalhdkp1gcdjmm18xgg8z5"; depends=[beeswarm Biobase curl DT fastmatch fgsea flatxml ggplot2 ggseqlogo htmlwidgets httr Matrix matrixStats networkD3 openxlsx plotly psych RColorBrewer reshape2 ROCR RSQLite S4Vectors shiny shinybusy shinycssloaders shinyjs shinythemes shinyWidgets stringr SummarizedExperiment survival survminer]; }; - ompBAM = derive2 { name="ompBAM"; version="1.6.0"; sha256="1z5vw3pwdjszcgm33hsnyl8ffjcpq5ld3y8c0kzp9j33b8jm76lr"; depends=[Rcpp zlibbioc]; }; - oncomix = derive2 { name="oncomix"; version="1.24.0"; sha256="0a1i3bhzjbq22cg9c9dqx722hlsf4ivli3wz2wnyrigj76jmmfq2"; depends=[ggplot2 ggrepel mclust RColorBrewer SummarizedExperiment]; }; - oncoscanR = derive2 { name="oncoscanR"; version="1.4.0"; sha256="19wzm5rlddwcmldrnhl0q5ddiybgk9nv9fvbmrvas0bzk1n6han8"; depends=[GenomicRanges IRanges magrittr readr S4Vectors]; }; - onlineFDR = derive2 { name="onlineFDR"; version="2.10.0"; sha256="03dq7pwhamhwzlx8rzyrhsvy12r405dm1zfviivkdff8gqxlzwgm"; depends=[progress Rcpp RcppProgress]; }; - ontoProc = derive2 { name="ontoProc"; version="1.24.0"; sha256="15dzpjj2fvj6k2pzv6sw02a5py547wa4f9arj4rqrjrsvwwm1l9q"; depends=[AnnotationHub Biobase BiocFileCache dplyr DT graph igraph magrittr ontologyIndex ontologyPlot Rgraphviz S4Vectors shiny SummarizedExperiment]; }; - openCyto = derive2 { name="openCyto"; version="2.14.0"; sha256="12b4a65zgswzddkfdyl4j06qp7w9lkxv4h05m4z8hfff8c9x5bls"; depends=[BH Biobase BiocGenerics cpp11 data_table flowClust flowCore flowViz flowWorkspace graph ncdfFlow RBGL RColorBrewer]; }; - openPrimeR = derive2 { name="openPrimeR"; version="1.24.0"; sha256="0jpq68pr7ky7ak4jj8hz25n8kq75jwdg0jz5sy9j4kx9gs0njl4d"; depends=[ape BiocGenerics Biostrings DECIPHER digest distr distrEx dplyr fitdistrplus foreach GenomicRanges ggplot2 Hmisc IRanges lpSolveAPI magrittr openxlsx plyr RColorBrewer reshape2 S4Vectors scales seqinr stringdist stringr uniqtag XML]; }; - openPrimeRui = derive2 { name="openPrimeRui"; version="1.24.0"; sha256="1vymiz4zxh2d6paff29fm04h73wj1wdbrjl417lmxxn6pnffmdil"; depends=[DT openPrimeR rmarkdown shiny shinyBS shinyjs]; }; - oposSOM = derive2 { name="oposSOM"; version="2.20.0"; sha256="0h8c1a0v4izqlkg0jkzzxn885h5whr3i9pna6vbpf0rlrp2lkfxj"; depends=[ape Biobase biomaRt fastICA fdrtool graph igraph pixmap png Rcpp RcppParallel RCurl scatterplot3d tsne XML]; }; - oppar = derive2 { name="oppar"; version="1.30.0"; sha256="0a6hhgcklwjvi7i3p9i6c9dfrxam5vxjj9fws3vnig8353zc35p2"; depends=[Biobase GSEABase GSVA]; }; - oppti = derive2 { name="oppti"; version="1.16.0"; sha256="0cn7pv1pjajh7kylfi4v8xx53bwcp34325hfg5aq5bz5ncsfwxlk"; depends=[devtools ggplot2 knitr limma parallelDist pheatmap RColorBrewer reshape]; }; - optimalFlow = derive2 { name="optimalFlow"; version="1.14.0"; sha256="0ghwdj48xqgnzmg1hcl0xplsmwbc1blnd8l3kkyf8058m0m0lymr"; depends=[dbscan doParallel dplyr ellipse flowMeans foreach optimalFlowData randomForest Rfast rgl rlang robustbase transport]; }; - orthogene = derive2 { name="orthogene"; version="1.8.0"; sha256="0kw2bd0196g15ghf5fnl79gvs9py221zalv2jz52vc3k871b0wi8"; depends=[babelgene data_table DelayedArray dplyr ggplot2 ggpubr ggtree gprofiler2 grr homologene jsonlite Matrix patchwork repmis]; }; - orthos = derive2 { name="orthos"; version="1.0.1"; sha256="0siblsmbswcbbzgd03hh50bcq0qhn2a7ia2mbkaps3z7dx4k0ywb"; depends=[AnnotationHub basilisk BiocParallel colorspace cowplot DelayedArray dplyr ExperimentHub ggplot2 ggpubr ggrepel ggsci HDF5Array keras orthosData plyr reticulate rlang S4Vectors SummarizedExperiment tensorflow tidyr]; }; - pRoloc = derive2 { name="pRoloc"; version="1.42.0"; sha256="14xdkcg92k0cn62vgaadmmfa1qz2r67xnn3lsrgps960gi66w2ps"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class coda dendextend e1071 FNN ggplot2 gtools hexbin kernlab knitr LaplacesDemon lattice MASS mclust mixtools MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; }; - pRolocGUI = derive2 { name="pRolocGUI"; version="2.12.0"; sha256="0m493r27n4aq7ig95gnn0di09qmcvmnzrdbks0lr2zd4p032l5gx"; depends=[Biobase BiocGenerics colorspace colourpicker dplyr DT ggplot2 MSnbase pRoloc scales shiny shinydashboard shinydashboardPlus shinyhelper shinyjs shinyWidgets]; }; - packFinder = derive2 { name="packFinder"; version="1.14.0"; sha256="1s3sqwhzf7ll8kp5wg2riv3yxwbrssh9qpyjis83n3a19qi64jz6"; depends=[ape Biostrings GenomicRanges IRanges kmer S4Vectors]; }; - padma = derive2 { name="padma"; version="1.12.0"; sha256="03b6zaas11i9aywlrpdhv6sv0cv6347yrw24hfpj8fym14sj67xd"; depends=[FactoMineR MultiAssayExperiment S4Vectors SummarizedExperiment]; }; - pageRank = derive2 { name="pageRank"; version="1.12.0"; sha256="0qvcbcil6kvfvk460lzpj43h0vw2mqc967c3kfnycylwxdcgkqd1"; depends=[GenomicRanges igraph motifmatchr]; }; - paircompviz = derive2 { name="paircompviz"; version="1.40.0"; sha256="1wi93vii4k84fp5ygvmakdw9jhl4qbnwjhfnxi0p7mv4sxxivxb4"; depends=[Rgraphviz]; }; - pairedGSEA = derive2 { name="pairedGSEA"; version="1.2.0"; sha256="1lcp5ghbf6vabiy9661qrqn5nfl71ay64q7cf3iz9hhwip61xbdy"; depends=[aggregation BiocParallel DESeq2 DEXSeq fgsea ggplot2 limma S4Vectors SummarizedExperiment sva]; }; - pairkat = derive2 { name="pairkat"; version="1.8.0"; sha256="14vad3fd9588yqh1cc52p43kpp5avnw10zdff4gzwgpx9yars7xs"; depends=[CompQuadForm data_table igraph KEGGREST magrittr SummarizedExperiment tibble]; }; - pandaR = derive2 { name="pandaR"; version="1.34.0"; sha256="1562dv98hrh61n8p48779cr1824qy2jjnqgv4pmpxbnihmk3mrnw"; depends=[Biobase BiocGenerics ggplot2 hexbin igraph matrixStats plyr reshape RUnit]; }; - panelcn_mops = derive2 { name="panelcn.mops"; version="1.24.0"; sha256="1b86bgnb0cr20ymp3zx75c178p7bjvfid6k43ip3cm7vzx86f1cv"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; - panp = derive2 { name="panp"; version="1.72.0"; sha256="1s069hlvbxgi37bx3h7bj8k5a94b0ndkvzjp2j5fji8y72f0sfzj"; depends=[affy Biobase]; }; - pareg = derive2 { name="pareg"; version="1.6.0"; sha256="0cvj8jx80q3d21icy9k88kc6xcb44fxmpq4sqdijglrjl7l1l2pn"; depends=[basilisk devtools doFuture doRNG DOSE dplyr foreach future ggplot2 ggraph ggrepel glue hms igraph keras logger magrittr Matrix nloptr progress proxy purrr reticulate rlang stringr tensorflow tfprobability tibble tidygraph tidyr]; }; - parglms = derive2 { name="parglms"; version="1.34.0"; sha256="05mrnddprcwl0m701fn2h1higy47yi2fmwwzd3zq1nr2qsacnpn1"; depends=[BatchJobs BiocGenerics doParallel foreach]; }; - parody = derive2 { name="parody"; version="1.60.0"; sha256="05mhbkhyh92bwmx37fpviprr9i4z0i6g24l71zk17gq0f8hwb4jj"; depends=[]; }; - partCNV = derive2 { name="partCNV"; version="1.0.0"; sha256="15caglc8xs4441va2p8bd2pbz4jvlczy4hjnky7i280zzrjqx52a"; depends=[AnnotationHub data_table depmixS4 GenomicRanges magrittr Seurat SingleCellExperiment]; }; - pathRender = derive2 { name="pathRender"; version="1.70.0"; sha256="04ij9f9vnzj4qzk8cgvrkd0jhjx4qh5g3cv25drd230v5x492lhz"; depends=[AnnotationDbi cMAP graph RColorBrewer Rgraphviz]; }; - pathifier = derive2 { name="pathifier"; version="1.40.0"; sha256="0y5hc1d5026kh3i05qpsjigfzhlp4h2f87ny08qbf3k9x7lndpbn"; depends=[princurve R_oo]; }; - pathview = derive2 { name="pathview"; version="1.42.0"; sha256="17kl7yvpjhsb52kz1pw3jnk6s480lnpvvh9rragndixsl8bkmqmc"; depends=[AnnotationDbi graph KEGGgraph KEGGREST org_Hs_eg_db png Rgraphviz XML]; }; - pathwayPCA = derive2 { name="pathwayPCA"; version="1.18.0"; sha256="14d0anbfwxd666gyhgnqjayr1ivhayq2a8cpgi0w1ycpsbylylp4"; depends=[lars survival]; }; - paxtoolsr = derive2 { name="paxtoolsr"; version="1.36.0"; sha256="07rkyn3i6v98lkjz13la0x1g81zhnyyr44jdid5c2dydlfpchl7h"; depends=[httr igraph jsonlite plyr R_utils rappdirs readr rJava rjson XML]; }; - pcaExplorer = derive2 { name="pcaExplorer"; version="2.28.0"; sha256="0ihc9jqjy0nl4pfgcxczfdf973nb99325agk73y0222ad1mpkc07"; depends=[AnnotationDbi base64enc biomaRt DESeq2 DT genefilter GenomicRanges ggplot2 ggrepel GO_db GOstats heatmaply IRanges knitr limma NMF pheatmap plotly plyr rmarkdown S4Vectors scales shiny shinyAce shinyBS shinydashboard SummarizedExperiment threejs tidyr topGO]; }; - pcaMethods = derive2 { name="pcaMethods"; version="1.94.0"; sha256="1asm4iafdzm98iv2j9sxvn5y9ss2p679cx7gwjipq8mf1d7bzfp0"; depends=[Biobase BiocGenerics MASS Rcpp]; }; - pcxn = derive2 { name="pcxn"; version="2.24.0"; sha256="1m8vs3bk7grc1mj4rh6vr50al0m1a79f6icbycfqfi1cqgz9pmi7"; depends=[pcxnData pheatmap]; }; - pdInfoBuilder = derive2 { name="pdInfoBuilder"; version="1.66.0"; sha256="1bcmd6g6qmddcxyafqmrk4zv8n14mjkim87ks8ha3rjyg5cpc9cs"; depends=[affxparser Biobase BiocGenerics Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - peakPantheR = derive2 { name="peakPantheR"; version="1.16.1"; sha256="087i47mzv7cs403injzryf6vxil4p2all4vvznfd10z879zkl7gr"; depends=[bslib doParallel DT foreach ggplot2 gridExtra lubridate minpack_lm MSnbase mzR pracma scales shiny shinycssloaders stringr XML]; }; - peco = derive2 { name="peco"; version="1.14.0"; sha256="0jhz9y6d9sfc6azw74rx5lcf421a3i9pb936rghlym8n24b72jvl"; depends=[assertthat circular conicfit doParallel foreach genlasso scater SingleCellExperiment SummarizedExperiment]; }; - pengls = derive2 { name="pengls"; version="1.8.0"; sha256="1b5xibq5z4lq6qr4s37r9w5ax2vci89a1hfi66l4xvbpm76zlckh"; depends=[BiocParallel glmnet nlme]; }; - pepStat = derive2 { name="pepStat"; version="1.36.0"; sha256="0rd1zwjnp0zmigscx38xzys29jqpkkg9fp24asvqikm1v3gpli3l"; depends=[Biobase data_table fields GenomicRanges ggplot2 IRanges limma plyr]; }; - pepXMLTab = derive2 { name="pepXMLTab"; version="1.36.0"; sha256="1d0n27xfyqdxayc9s1w5j2pj7x82kwh80kszr46f30yhfd61l6j4"; depends=[XML]; }; - periodicDNA = derive2 { name="periodicDNA"; version="1.12.0"; sha256="08qf0sqy71cr2y9xj596igm4j7zym9ny5q6xd67jrp5iqwysyfzq"; depends=[BiocParallel Biostrings BSgenome cowplot GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr rtracklayer S4Vectors zoo]; }; - pfamAnalyzeR = derive2 { name="pfamAnalyzeR"; version="1.2.0"; sha256="0qxxp7kfwbb9q471mgwc4bd8dmyid56ddyzw2jlg4gb1wcq9py67"; depends=[dplyr magrittr readr stringr tibble]; }; - pgca = derive2 { name="pgca"; version="1.26.0"; sha256="0sp0rhrs36hhyydswi00321cw13m4hcyf6a430wc4xsmia29463s"; depends=[]; }; - phantasus = derive2 { name="phantasus"; version="1.22.2"; sha256="1ynwx1bbzj1xm6hci4kxqgmzargarg85saqz1219axj1gsyhljfn"; depends=[AnnotationDbi assertthat Biobase ccaPP curl data_table DESeq2 edgeR fgsea GEOquery ggplot2 gtable htmltools httpuv httr jsonlite limma Matrix opencpu pheatmap protolite rhdf5 Rook scales stringr svglite]; }; - phantasusLite = derive2 { name="phantasusLite"; version="1.0.0"; sha256="0pq50l0lnx3b8v95k37cj7dcm60ggar0zs6j4qv3qpjd37aqqbwa"; depends=[Biobase data_table httr rhdf5client stringr]; }; - phemd = derive2 { name="phemd"; version="1.18.0"; sha256="174jp26insq2mwf9yw9bls4i9b2a8vccfkrg2h1dzvyyk513bi83"; depends=[Biobase BiocGenerics cluster cowplot destiny ggplot2 igraph maptree monocle phateR pheatmap pracma RANN RColorBrewer reticulate Rtsne S4Vectors scatterplot3d Seurat SingleCellExperiment SummarizedExperiment transport VGAM]; }; - phenoTest = derive2 { name="phenoTest"; version="1.50.0"; sha256="0hrmbjanc5sscwc6948w5np4phz4ax8qldasi4cg5n0x18hqr3h5"; depends=[annotate AnnotationDbi Biobase biomaRt BMA Category ellipse genefilter ggplot2 gplots GSEABase Heatplus hgu133a_db Hmisc hopach limma mgcv survival xtable]; }; - phenomis = derive2 { name="phenomis"; version="1.4.0"; sha256="1zfrw4s01l030i4kpn07kw4gg9324s8aikkvv0pqm1jlv1ajj01g"; depends=[Biobase biodb biodbChebi data_table futile_logger ggplot2 ggrepel htmlwidgets igraph limma MultiAssayExperiment MultiDataSet plotly PMCMRplus ranger RColorBrewer ropls SummarizedExperiment tibble tidyr VennDiagram]; }; - phenopath = derive2 { name="phenopath"; version="1.26.0"; sha256="114wpnsszivxjp5q0xr7vz4g249dhxzx9aqvcx3bky5s7vqf9q94"; depends=[dplyr ggplot2 Rcpp SummarizedExperiment tibble tidyr]; }; - philr = derive2 { name="philr"; version="1.28.0"; sha256="1kd7j8ah7v15xdkks4bjww72pbb45b2nvjygk65wnjc8qs53zngw"; depends=[ape ggplot2 ggtree phangorn tidyr]; }; - phosphonormalizer = derive2 { name="phosphonormalizer"; version="1.26.0"; sha256="1xs9vdf0kh2dpnbn1cdfw64gq4nzawm53vrlq83qhccfgfxvvx9i"; depends=[matrixStats plyr]; }; - phyloseq = derive2 { name="phyloseq"; version="1.46.0"; sha256="06gnpjcniqm8i52xh9xl3nn0wm9nn9rkqd3w3fjv7ii142xypjln"; depends=[ade4 ape Biobase BiocGenerics biomformat Biostrings cluster data_table foreach ggplot2 igraph multtest plyr reshape2 scales vegan]; }; - piano = derive2 { name="piano"; version="2.18.0"; sha256="0rw55ig3pbvi2kyg10rx60ldcncsd4gki2h1zpr1nhmqg3fv0l5y"; depends=[Biobase BiocGenerics DT fgsea gplots htmlwidgets igraph marray relations scales shiny shinydashboard shinyjs visNetwork]; }; - pickgene = derive2 { name="pickgene"; version="1.74.0"; sha256="0dp862069sxyaxmniszn9hggpjqch3dg9s3q5f7iqdb9gijvz8jx"; depends=[MASS]; }; - pipeComp = derive2 { name="pipeComp"; version="1.12.0"; sha256="0wf2vw4r83l6jwdp9i57g7rv69j9wg6rzcamsvb3ksxfj0yjsf6r"; depends=[aricode BiocParallel circlize clue cluster ComplexHeatmap cowplot dplyr ggplot2 intrinsicDimension knitr Matrix matrixStats randomcoloR RColorBrewer reshape2 Rtsne S4Vectors scales scater scran Seurat SingleCellExperiment SummarizedExperiment uwot viridisLite]; }; - pipeFrame = derive2 { name="pipeFrame"; version="1.18.0"; sha256="1vvxjb0hzr1y09yl39lsayvpy15mc3199s6khgh3v8416mhxhwn9"; depends=[Biostrings BSgenome digest GenomeInfoDb magrittr rmarkdown visNetwork]; }; - planet = derive2 { name="planet"; version="1.10.0"; sha256="10imcjax2ymqwkrx1li5dmi0yy42nn4gl029czgrsnk8fcfkijmj"; depends=[dplyr magrittr tibble]; }; - planttfhunter = derive2 { name="planttfhunter"; version="1.2.0"; sha256="18p9ms5vz8bis6v07dh9zn3qm0bck71p1rflzslcqgnx2y8icnc7"; depends=[Biostrings SummarizedExperiment]; }; - plasmut = derive2 { name="plasmut"; version="1.0.0"; sha256="1b27ykiraprda3a1sg008wrkkm5vmbhb5mf3sxgg0b136ldfqv1h"; depends=[dplyr tibble]; }; - plgem = derive2 { name="plgem"; version="1.74.0"; sha256="0s5hia3xvddi0gaawcr5zsh34v6sh2zdi5gsjis8ar2g2p7agqgg"; depends=[Biobase MASS]; }; - plier = derive2 { name="plier"; version="1.72.0"; sha256="1a4sb7ni6byzdhh5wkfg7z47za8cr6q85b7349wz02c87axjhn31"; depends=[affy Biobase]; }; - plotGrouper = derive2 { name="plotGrouper"; version="1.20.0"; sha256="0f3vnv6kmx62rfxdqfyn1j8npda18ry39y1cxxdghpxbnvl9678d"; depends=[colourpicker dplyr egg ggplot2 ggpubr gridExtra gtable Hmisc magrittr readr readxl rlang scales shiny shinythemes stringr tibble tidyr]; }; - plotgardener = derive2 { name="plotgardener"; version="1.8.2"; sha256="0mh025ki2i35pm5a51sy5nak1h2ygzakphjj74n0d0732a00xykj"; depends=[curl data_table dplyr GenomeInfoDb GenomicRanges ggplotify IRanges plyranges purrr RColorBrewer Rcpp rlang strawr withr]; }; - plyinteractions = derive2 { name="plyinteractions"; version="1.0.0"; sha256="1f11mnaykvr1knzymr73ivrfwnsbnr8gdb4wl3hr5g0p2mhl3ir6"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicRanges InteractionSet IRanges plyranges rlang S4Vectors tibble tidyselect]; }; - plyranges = derive2 { name="plyranges"; version="1.22.0"; sha256="1z4pc9slbd6ji3c6g9flxhvvf0anjmywrlnjblv1mpgsh88avp7w"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges IRanges magrittr rlang Rsamtools rtracklayer S4Vectors tidyselect]; }; - pmm = derive2 { name="pmm"; version="1.34.0"; sha256="0hcm03z7z4fsxlr0g1jwpqmwmq17pzagwkfds70p0ldixrs5zfrw"; depends=[lme4]; }; - pmp = derive2 { name="pmp"; version="1.14.1"; sha256="03zk1p952p938vhiw5s71kqh7bi88xb2rh6gp104fcb8z4lj2sqb"; depends=[ggplot2 impute matrixStats missForest pcaMethods reshape2 S4Vectors SummarizedExperiment]; }; - podkat = derive2 { name="podkat"; version="1.34.0"; sha256="0003237bhwyrvlfsb5vncbq76l74i9y0cvh0zmbfpbqz8d72nf98"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rhtslib Rsamtools]; }; - pogos = derive2 { name="pogos"; version="1.22.0"; sha256="0rx60m4jmw8a7ha6nkszachk4dl0bjv0n4mvgvi2kiy7a3s3p6zp"; depends=[ggplot2 httr ontoProc rjson S4Vectors shiny]; }; - polyester = derive2 { name="polyester"; version="1.38.0"; sha256="1iycdxj0jhh2faclfzflp2cjc2zmxmhy03avv75h0qg3j5kf35l4"; depends=[Biostrings IRanges limma logspline S4Vectors zlibbioc]; }; - powerTCR = derive2 { name="powerTCR"; version="1.22.0"; sha256="06fmphdq95pjbbvm8m8h1wajbp3vhl0zj7ddbzks9fy7ankp1n3i"; depends=[cubature doParallel evmix foreach magrittr purrr truncdist vegan VGAM]; }; - ppcseq = derive2 { name="ppcseq"; version="1.10.0"; sha256="01g67bskk71imkb04ln3cngbdf23lvaaldsvbrrk6sym51l3c3mn"; depends=[benchmarkme BH dplyr edgeR foreach ggplot2 lifecycle magrittr purrr Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders tibble tidybayes tidyr]; }; - pqsfinder = derive2 { name="pqsfinder"; version="2.18.0"; sha256="0bm4rp6dvk9y8i3mj762rjjna9w75j6ggkkd60aqddidx4dicc6b"; depends=[BH Biostrings GenomicRanges IRanges Rcpp S4Vectors]; }; - pram = derive2 { name="pram"; version="1.18.0"; sha256="1zid1ra1b6qa6c8xw5z9jclkkjv5r61rzhw0xikm5mamg4mhvv4x"; depends=[BiocGenerics BiocParallel data_table GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; - prebs = derive2 { name="prebs"; version="1.42.0"; sha256="1zg73x9ygllxrjhswvz9bv5lacnfxlaq56y34j6zkvj3zmcpqx4g"; depends=[affy Biobase GenomeInfoDb GenomicAlignments GenomicRanges IRanges RPA S4Vectors]; }; - preciseTAD = derive2 { name="preciseTAD"; version="1.12.0"; sha256="1vf71x59wghiq78ns0xfr587rarzpcnzkik78xghnpkidk16183s"; depends=[caret cluster dbscan doSNOW e1071 foreach GenomicRanges gtools IRanges ModelMetrics pbapply pROC PRROC randomForest rCGH S4Vectors]; }; - preprocessCore = derive2 { name="preprocessCore"; version="1.64.0"; sha256="15fy3vwnjx6rwrkhbwxyvdykkfdis8c0m18x6y7irvyij9lm6x1y"; depends=[]; }; - primirTSS = derive2 { name="primirTSS"; version="1.20.0"; sha256="1gzswcihphq6vc9n0cshsf8nznysa1f738cv6l9mjkzshj2f3bxq"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg38 dplyr GenomicRanges GenomicScores Gviz IRanges JASPAR2018 phastCons100way_UCSC_hg38 purrr R_utils rtracklayer S4Vectors shiny stringr TFBSTools tibble tidyr]; }; - proActiv = derive2 { name="proActiv"; version="1.12.0"; sha256="00cm99hgcrirdj1xrkg06q2r7idy0fajw8k33934m2622si7lwhj"; depends=[AnnotationDbi BiocParallel data_table DESeq2 dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges rlang S4Vectors scales SummarizedExperiment tibble]; }; - proBAMr = derive2 { name="proBAMr"; version="1.36.0"; sha256="0jn0cv48nfykyilmbbpdapxwfslrdby2j83s7f2mm3hbrikvk11r"; depends=[AnnotationDbi Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer]; }; - proDA = derive2 { name="proDA"; version="1.16.0"; sha256="08zs0lapq9qynivrainh29l0flz0g6w68xzdf13hr9y1lizs11vp"; depends=[BiocGenerics extraDistr S4Vectors SummarizedExperiment]; }; - procoil = derive2 { name="procoil"; version="2.30.0"; sha256="020sj33sj333cb5bvvld7rsxc8kwzkl996y11f6n8h5zs3flqbn1"; depends=[Biostrings kebabs S4Vectors]; }; - profileScoreDist = derive2 { name="profileScoreDist"; version="1.30.0"; sha256="1x34mqb7d5zb1nqp6zh2s3bx95qxaizyn6bi11vs84qvp4myqmws"; depends=[BiocGenerics Rcpp]; }; - profileplyr = derive2 { name="profileplyr"; version="1.18.0"; sha256="1cng4l5b1mfx3iqx7gis3p9s0iyhrjm554gcdhg15hpydapgx7nv"; depends=[BiocGenerics BiocParallel ChIPseeker circlize ComplexHeatmap dplyr EnrichedHeatmap GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges magrittr org_Hs_eg_db org_Mm_eg_db pheatmap R_utils rGREAT rjson rlang Rsamtools rtracklayer S4Vectors soGGi SummarizedExperiment tidyr tiff TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - progeny = derive2 { name="progeny"; version="1.24.0"; sha256="1plgwi2fmx7bh648fqpzzfqnh84fsgnn5jfcbdf9yia6zzigicql"; depends=[Biobase decoupleR dplyr ggplot2 ggrepel gridExtra reshape2 tidyr]; }; - projectR = derive2 { name="projectR"; version="1.18.0"; sha256="1jg8nkkh8xc2fiw94h69saira55gm9qjjiv206cac9hi49fjw1k8"; depends=[cluster cowplot dplyr ggalluvial ggplot2 ggrepel limma Matrix MatrixModels NMF RColorBrewer reshape2 ROCR scales tsne umap viridis]; }; - protGear = derive2 { name="protGear"; version="1.6.0"; sha256="0r8md32vxjzarjldr9vsh3k0ms4zgqm9c7pp2flanbyinnqlfnxv"; depends=[Biobase data_table dplyr factoextra FactoMineR flexdashboard genefilter GGally ggplot2 ggpubr gtools htmltools Kendall knitr limma magrittr MASS pheatmap plotly plyr purrr readr remotes rlang rmarkdown shiny shinydashboard styler tibble tidyr vsn]; }; - proteinProfiles = derive2 { name="proteinProfiles"; version="1.42.0"; sha256="152nv9m4pzq7jh37xl4shv5g71w490cxqcah2lqprpgd6mwc5ac1"; depends=[]; }; - psichomics = derive2 { name="psichomics"; version="1.28.1"; sha256="1kajq0xx3k4zwfk1kzh96av1a8zjs58iphvf034xnpdqkjxgj07c"; depends=[AnnotationDbi AnnotationHub BiocFileCache cluster colourpicker data_table digest dplyr DT edgeR fastICA fastmatch ggplot2 ggrepel highcharter htmltools httr jsonlite limma pairsD3 plyr purrr R_utils Rcpp recount reshape2 Rfast shiny shinyBS shinyjs stringr SummarizedExperiment survival XML xtable]; }; - psygenet2r = derive2 { name="psygenet2r"; version="1.34.1"; sha256="08qjzj76vf89l0v8lfchrryvqpb049za0qpgldxzr8kxwzqx1bl5"; depends=[BgeeDB Biobase biomaRt ggplot2 GO_db igraph labeling RCurl reshape2 stringr topGO]; }; - ptairMS = derive2 { name="ptairMS"; version="1.10.0"; sha256="0qjnbx91vdj6hbiri7nh3q53p8hi0vnjxq8hcwrsqa5ar70k38hz"; depends=[Biobase bit64 chron data_table doParallel DT enviPat foreach ggplot2 ggpubr gridExtra Hmisc minpack_lm MSnbase plotly Rcpp rhdf5 rlang scales shiny shinyscreenshot signal]; }; - puma = derive2 { name="puma"; version="3.44.0"; sha256="1s50gf44psg01p8c84rp89hkic7bcxyk9wyzq8b7xphvilgy4gdk"; depends=[affy affyio Biobase mclust oligo oligoClasses]; }; - pvac = derive2 { name="pvac"; version="1.50.0"; sha256="073ah4d92kqgaxcbyvn7v17bfj0303g5zmdwpmm73rgxl9zj2idd"; depends=[affy Biobase]; }; - pvca = derive2 { name="pvca"; version="1.42.0"; sha256="0l2d8yqbqb9ra04adzlldjkcnpmd01ziia40k4p5z265f0apxwvc"; depends=[Biobase lme4 Matrix vsn]; }; - pwOmics = derive2 { name="pwOmics"; version="1.34.0"; sha256="0sq98v0ln6y0mnl5xhk90j66zzvxwgbzr15xcbyn1f51a9jil21l"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics biomaRt data_table GenomicRanges gplots graph igraph rBiopaxParser STRINGdb]; }; - qPLEXanalyzer = derive2 { name="qPLEXanalyzer"; version="1.20.0"; sha256="1iy4d6nlbvinqqjynlixv2j3fy2vnyrjgs39kn5grj1sivbykr46"; depends=[assertthat Biobase BiocGenerics Biostrings dplyr ggdendro ggplot2 IRanges limma magrittr MSnbase preprocessCore purrr RColorBrewer readr rlang scales stringr tibble tidyr tidyselect]; }; - qckitfastq = derive2 { name="qckitfastq"; version="1.18.0"; sha256="0fa9cg8nmsch13snk5n81zvm7f2d1ddhlbfxx9dl8g7kam2lc6i1"; depends=[data_table dplyr ggplot2 magrittr Rcpp reshape2 rlang RSeqAn seqTools zlibbioc]; }; - qcmetrics = derive2 { name="qcmetrics"; version="1.40.1"; sha256="09z3j1xml3yn7lwmd4rfxiz6yws3qkzdxhfvd68hw6k0xjlziglk"; depends=[Biobase knitr pander S4Vectors xtable]; }; - qmtools = derive2 { name="qmtools"; version="1.6.0"; sha256="0p1455wsl8ca2rjzvzv2ifwlfa3jy4pp2nqxd3kd6w9wyp839q05"; depends=[ggplot2 heatmaply igraph limma MsCoreUtils patchwork rlang scales SummarizedExperiment VIM]; }; - qpcrNorm = derive2 { name="qpcrNorm"; version="1.60.0"; sha256="0isjj3r89r49jrb0nh8im4kj22hjyic27j9s14n5z7rhkmsn3yac"; depends=[affy Biobase limma]; }; - qpgraph = derive2 { name="qpgraph"; version="2.36.0"; sha256="03vk1msbgph6ig3hz34p1lb0rv7y1x8ylmm80d1n3yhmk61q1jd4"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; }; - qsea = derive2 { name="qsea"; version="1.28.0"; sha256="0iz12lasqnqc05bwyf6m8816ra9krvz3c12bx7d7gn3p6v3xl6r7"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges gtools HMMcopy IRanges limma Rsamtools rtracklayer S4Vectors zoo]; }; - qsmooth = derive2 { name="qsmooth"; version="1.18.0"; sha256="1bwg9m0w5kwv2xggnif1a2qsq5wwl50k4d4bdvi3bx28hrznig71"; depends=[Hmisc SummarizedExperiment sva]; }; - qsvaR = derive2 { name="qsvaR"; version="1.6.0"; sha256="1n018awki3m58r63l7rihzc19si1ri4bwvskdjgys6j2dsrc9wsc"; depends=[ggplot2 SummarizedExperiment sva]; }; - quantiseqr = derive2 { name="quantiseqr"; version="1.10.0"; sha256="01aysyskglbwk6m5m4y8aiav5w60kf2gk8jswlks7zf1c5j02l4y"; depends=[Biobase ggplot2 limSolve MASS preprocessCore rlang SummarizedExperiment tidyr]; }; - quantro = derive2 { name="quantro"; version="1.36.0"; sha256="032qxwgldl1hbgsgb5q3fi7nfg1nx3k0yppqkvim5cif613m1nzq"; depends=[Biobase doParallel foreach ggplot2 iterators minfi RColorBrewer]; }; - quantsmooth = derive2 { name="quantsmooth"; version="1.68.0"; sha256="050nnwhxk3ld615f6ij4cc3d6wzrrxykvv02fr20fg5gzdj0z08a"; depends=[quantreg]; }; - qusage = derive2 { name="qusage"; version="2.36.0"; sha256="1qqsj92fq32j4rbmrnkabnjbyn786c4vxp7qcf99zlpdv0k8ladw"; depends=[Biobase emmeans fftw limma nlme]; }; - qvalue = derive2 { name="qvalue"; version="2.34.0"; sha256="10v5khnrs1fa84d430zy52f9466rwb1byaw1l3c9nivbhmaxhvyi"; depends=[ggplot2 reshape2]; }; - r3Cseq = derive2 { name="r3Cseq"; version="1.48.0"; sha256="1llkfcy13h0c973703jmpgp2n6xxfsizb9iw1wxzgkbp1v0iy268"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges IRanges qvalue RColorBrewer Rsamtools rtracklayer sqldf VGAM]; }; - rBiopaxParser = derive2 { name="rBiopaxParser"; version="2.42.0"; sha256="1zya8r9h93jcpggjlj3v363jmxzwah4mrn2kr2i65lp9lsbb4p17"; depends=[data_table XML]; }; - rCGH = derive2 { name="rCGH"; version="1.32.0"; sha256="1b1n8g0bwkxq090jk330r75sh7aamfbx7d09i784mhaqnrrmfy1z"; depends=[aCGH affy AnnotationDbi DNAcopy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges lattice limma mclust org_Hs_eg_db plyr shiny TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - rDGIdb = derive2 { name="rDGIdb"; version="1.28.0"; sha256="1g4bnf21wygch93j3v0wrpf6qbmcs3alxhbdh8zi874iqv5mfncc"; depends=[httr jsonlite]; }; - rGADEM = derive2 { name="rGADEM"; version="2.50.0"; sha256="14jcsqb56vn67hjmcjjnwswzbilsarkk8kblc715c7da72q7fzpn"; depends=[Biostrings BSgenome GenomicRanges IRanges seqLogo]; }; - rGREAT = derive2 { name="rGREAT"; version="2.4.0"; sha256="09fvmfiavawfwbxaj1585l2n00fibx9z3r17dv06hc6b40a1sa12"; depends=[AnnotationDbi circlize digest doParallel DT foreach GenomeInfoDb GenomicFeatures GenomicRanges GetoptLong GlobalOptions GO_db IRanges org_Hs_eg_db progress RColorBrewer Rcpp RCurl rjson S4Vectors shiny TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - rGenomeTracks = derive2 { name="rGenomeTracks"; version="1.8.0"; sha256="0hdvqri97pbin5hj687ng9alw0wsyh7jx9sfl4n46i1kwlb56ijk"; depends=[imager reticulate rGenomeTracksData]; }; - rRDP = derive2 { name="rRDP"; version="1.36.0"; sha256="0y7l4qqsqfn3l9wvd89vffijqlwkabizidia6sq953f4hardcmrc"; depends=[Biostrings]; }; - rSWeeP = derive2 { name="rSWeeP"; version="1.14.0"; sha256="0r1n5j2g7d5cnd5cwyg40k0r3jmfv21aq8qd566kcd62wl537zim"; depends=[pracma]; }; - rScudo = derive2 { name="rScudo"; version="1.18.1"; sha256="167khkv93xlx7vdqg4k5b0gyk9v8vl4w30dfbfbrrrzcdzb8h444"; depends=[Biobase BiocGenerics igraph S4Vectors stringr SummarizedExperiment]; }; - rTRM = derive2 { name="rTRM"; version="1.40.0"; sha256="1qs74lvl5grc8dh9v8awyia9rjbgic7kf4c7ff61dmdglwwjkqak"; depends=[AnnotationDbi DBI igraph RSQLite]; }; - rTRMui = derive2 { name="rTRMui"; version="1.40.0"; sha256="1kp27wmqb6hrd2zghss36sail03acdvf3md44xvij2c0q1xn5pxm"; depends=[MotifDb org_Hs_eg_db org_Mm_eg_db rTRM shiny]; }; - rWikiPathways = derive2 { name="rWikiPathways"; version="1.22.1"; sha256="1d4kjdqafkky99w6mx32bc2p7m4lfrq8f7sdg8ixzgnw5w5kppwp"; depends=[data_table dplyr httr lubridate purrr RCurl readr rjson stringr tidyr XML]; }; - raer = derive2 { name="raer"; version="1.0.2"; sha256="0jh2hpv0mrhxnpks00b8ap3ad784sjlc75lnybqgifvpkvbnyl13"; depends=[BiocGenerics BiocParallel Biostrings BSgenome cli data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Matrix R_utils Rhtslib Rsamtools rtracklayer S4Vectors SingleCellExperiment SummarizedExperiment]; }; - rain = derive2 { name="rain"; version="1.36.0"; sha256="0cf98khyjdnm1qpdnbmk9wnc2yicjddsq61dzp59z9sr0gqbljmy"; depends=[gmp multtest]; }; - ramr = derive2 { name="ramr"; version="1.10.0"; sha256="1j32jg5z77wic1radm7kxqzvx14bc5llaad1j21s3g825z5g98y4"; depends=[BiocGenerics doParallel doRNG EnvStats ExtDist foreach GenomicRanges ggplot2 IRanges matrixStats reshape2 S4Vectors]; }; - ramwas = derive2 { name="ramwas"; version="1.26.0"; sha256="0nldil34iji00flczvcmkrkfl8ywi7ms96ki28ywf0lcrjdc8hjb"; depends=[BiocGenerics biomaRt Biostrings digest filematrix GenomicAlignments glmnet KernSmooth Rsamtools]; }; - randPack = derive2 { name="randPack"; version="1.48.0"; sha256="1qf188l25n8rzg8lzqnbkz73xwvjcj5s0x9sr5qgxy95jbf0qqfk"; depends=[Biobase]; }; - randRotation = derive2 { name="randRotation"; version="1.14.0"; sha256="0lsw29mhzq017j22a3wb3dlyyrads8c2bkdb5m1bhsiwgg124wsr"; depends=[Rdpack]; }; - rawrr = derive2 { name="rawrr"; version="1.10.2"; sha256="1wygx3qpsl518wgjhcp69r5bkcg7k30jafl9zzbd6m972mbc6pqh"; depends=[]; }; - rbsurv = derive2 { name="rbsurv"; version="2.60.0"; sha256="01ksmdhzj8ra2is2j9np1l4b96kxyrmbvnfzmmvc43n7fvbv9ach"; depends=[Biobase survival]; }; - rcellminer = derive2 { name="rcellminer"; version="2.24.0"; sha256="1h2x16b8ad27mmdhx8ary5l2wsgarfldi93ib3iv0iaj7ip2nvjw"; depends=[Biobase ggplot2 gplots rcellminerData shiny stringr]; }; - rebook = derive2 { name="rebook"; version="1.12.0"; sha256="0ybd6klki4drb0kq45sf36vz2811cr9qmizi9vjf2j6ab7x3m0b4"; depends=[BiocStyle dir_expiry filelock knitr rmarkdown]; }; - receptLoss = derive2 { name="receptLoss"; version="1.14.0"; sha256="0rdapj58cfxl7jv5bk4jradx6rzq7g3r3vv7p0zwvl0b16ixgcjc"; depends=[dplyr ggplot2 magrittr SummarizedExperiment tidyr]; }; - reconsi = derive2 { name="reconsi"; version="1.14.0"; sha256="1siwbbrlbqid8vwf0a4rx9y0h1w21lh4y51jm83dfspnhh2dvya9"; depends=[ggplot2 ks Matrix matrixStats phyloseq reshape2]; }; - recount = derive2 { name="recount"; version="1.28.0"; sha256="1nn2fr4ycr7ki9kf00g4lhz1g46lnd9jf813x2ss7ryfzkrkfq7g"; depends=[BiocParallel derfinder downloader GenomeInfoDb GenomicRanges GEOquery IRanges RCurl rentrez rtracklayer S4Vectors SummarizedExperiment]; }; - recount3 = derive2 { name="recount3"; version="1.12.0"; sha256="0zn4jl197wgri3kyvhh2p3s15fzl66km6kbl2yczy000fhryfijl"; depends=[BiocFileCache data_table GenomicRanges httr Matrix R_utils rtracklayer S4Vectors sessioninfo SummarizedExperiment]; }; - recountmethylation = derive2 { name="recountmethylation"; version="1.12.0"; sha256="1zv72m9n1vwv1qvlv1700vxlxrwzncjqqf8lqac4792aqwykl78l"; depends=[basilisk BiocFileCache DelayedMatrixStats HDF5Array minfi R_utils RCurl reticulate rhdf5 S4Vectors]; }; - recoup = derive2 { name="recoup"; version="1.30.0"; sha256="1c2kpqbvax1wms0d1mxv8vyqmj9h1xn3wxzqnvd2xwfhy57k29kw"; depends=[BiocGenerics biomaRt Biostrings circlize ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 httr IRanges Rsamtools RSQLite rtracklayer S4Vectors stringr]; }; - regionReport = derive2 { name="regionReport"; version="1.36.0"; sha256="1nki9k66fv77499zvi7k1vlnxwfiyp09ylirqvavjlgyb9j6avk7"; depends=[BiocStyle DEFormats derfinder DESeq2 GenomeInfoDb GenomicRanges knitr knitrBootstrap RefManageR rmarkdown S4Vectors SummarizedExperiment]; }; - regionalpcs = derive2 { name="regionalpcs"; version="1.0.0"; sha256="0ga0x7k4ll656i40caa06jz3yd9hsvvynr0ypw58yznwamixssp1"; depends=[dplyr GenomicRanges PCAtools tibble]; }; - regioneR = derive2 { name="regioneR"; version="1.34.0"; sha256="1qcgbj7d2fngs3p9a9apnj14x35kc651fy3m0651dnqrxz8j5yij"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges memoise rtracklayer S4Vectors]; }; - regioneReloaded = derive2 { name="regioneReloaded"; version="1.4.0"; sha256="05ac0ba7zl0sb1b2nrihpwa8y4ys5zwn2qgg7mzaj9vapscyw0sl"; depends=[cluster ggplot2 ggrepel RColorBrewer regioneR reshape2 Rtsne scales umap]; }; - regsplice = derive2 { name="regsplice"; version="1.28.1"; sha256="0rljzhpwyl36rqbzfb2cwmq97p2qwrh5wxis276n1ssgzd0lpwcm"; depends=[edgeR glmnet limma pbapply S4Vectors SummarizedExperiment]; }; - regutools = derive2 { name="regutools"; version="1.14.0"; sha256="1mvlihb4ps8616wvs9vyg4x6h1h6gj8psy3bmqmj5y6lb09dgfs5"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings DBI GenomicRanges Gviz IRanges RCy3 RSQLite S4Vectors]; }; - restfulSE = derive2 { name="restfulSE"; version="1.24.0"; sha256="0i40yfvynxy34jfkvzyvjwvxf89zi4pvy9m9i0bk93l17gyhnjyl"; depends=[AnnotationDbi AnnotationHub bigrquery Biobase DBI DelayedArray dplyr ExperimentHub GO_db magrittr reshape2 rhdf5client rlang S4Vectors SummarizedExperiment]; }; - retrofit = derive2 { name="retrofit"; version="1.2.0"; sha256="0rsrj70xbzdvbv34p9r0cgw2gkknmccrpsyykhm3l1c1aa1hh8md"; depends=[Rcpp]; }; - rexposome = derive2 { name="rexposome"; version="1.24.1"; sha256="16bshcja07s500xcibr8yqlmbzp7plq1fqajj4gj1gvqi7bix8j4"; depends=[Biobase circlize corrplot FactoMineR ggplot2 ggrepel ggridges glmnet gplots gridExtra gtools Hmisc imputeLCMD lme4 lsr mice pryr reshape2 S4Vectors scales scatterplot3d stringr]; }; - rfPred = derive2 { name="rfPred"; version="1.40.0"; sha256="10llzfwjdwppqs8mskn3ivifc743vf79fkw8cicqv29nc80r8p7h"; depends=[data_table GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; - rfaRm = derive2 { name="rfaRm"; version="1.14.2"; sha256="0piry7i6m1sikckpq9v5a83bx5j0hi5k52ycs2sf9s23i19kv5bb"; depends=[Biostrings data_table httr IRanges jsonlite magick rsvg rvest S4Vectors stringi xml2]; }; - rgoslin = derive2 { name="rgoslin"; version="1.6.0"; sha256="06riq52zrjmp0hf3ik5hra3b0dawaqggagaq3ixz54bbx7nriv6w"; depends=[dplyr Rcpp]; }; - rgsepd = derive2 { name="rgsepd"; version="1.34.0"; sha256="1g1h66hbb29hsvjzdyg4s84ihifpqjw0xqm1rrcaqd5l60n8mx4j"; depends=[AnnotationDbi biomaRt DESeq2 GO_db goseq gplots org_Hs_eg_db SummarizedExperiment]; }; - rhdf5 = derive2 { name="rhdf5"; version="2.46.1"; sha256="0yfy0y9ywzbbdmvvraxmizv3w2x1iznhfys6hhwyi644pxh4k3xn"; depends=[rhdf5filters Rhdf5lib S4Vectors]; }; - rhdf5client = derive2 { name="rhdf5client"; version="1.24.0"; sha256="0mjijy15gbdp85nnb10xpz95g2wvcy0mfcwx9sl38k1wqx6i86s4"; depends=[data_table DelayedArray httr rjson]; }; - rhdf5filters = derive2 { name="rhdf5filters"; version="1.14.1"; sha256="0cqf7k19k4m4swd2c1wd9cyzw9k90s3d3jq0hijjwvza50nn2dk6"; depends=[Rhdf5lib]; }; - riboSeqR = derive2 { name="riboSeqR"; version="1.36.0"; sha256="1cigbp3pc70ipja9mmprkrs91723r1zwgxbzyp87n5mb0i4q8xqh"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools seqLogo]; }; - ribor = derive2 { name="ribor"; version="1.14.0"; sha256="12hnrw5y776k0kvd5n661gqq97zgx7vk0xbil21rqlm4cgnfplza"; depends=[dplyr ggplot2 hash rhdf5 rlang S4Vectors tidyr yaml]; }; - ribosomeProfilingQC = derive2 { name="ribosomeProfilingQC"; version="1.14.1"; sha256="0k910g7z767d9b3hnph707sfx7b50mm9z98bcwqag8n43k50qin7"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome cluster EDASeq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfittext ggplot2 ggrepel IRanges motifStack Rsamtools Rsubread rtracklayer RUVSeq S4Vectors scales XVector]; }; - rifi = derive2 { name="rifi"; version="1.6.0"; sha256="0d0nwwz66sasg7nisakqbknz2sgjj7ky3sa1rqhhp1gncwrmbsl2"; depends=[car cowplot doMC dplyr egg foreach ggplot2 nls2 nnet reshape2 rlang rtracklayer S4Vectors scales stringr SummarizedExperiment tibble]; }; - rifiComparative = derive2 { name="rifiComparative"; version="1.2.0"; sha256="16byiqq5d9lk8dkf5ij86l1dhlzjhry0dwnrsg1ci1np1mqwnx9i"; depends=[cowplot devtools doMC dplyr DTA egg foreach ggplot2 ggrepel LSD nnet reshape2 rlang rtracklayer S4Vectors scales stringr SummarizedExperiment tibble writexl]; }; - rmelting = derive2 { name="rmelting"; version="1.18.0"; sha256="14cimxjdzan3nidzjxvndpp75r04xxnqw522a9bnvyjy9cfjfa54"; depends=[Rdpack rJava]; }; - rmspc = derive2 { name="rmspc"; version="1.8.0"; sha256="0fkigy33rn5vrpz4603d2npcc4k271hm3wz6cbwrgngvzk731ggq"; depends=[BiocManager GenomicRanges processx rtracklayer stringr]; }; - rnaEditr = derive2 { name="rnaEditr"; version="1.12.0"; sha256="04aayj38kwq4v43dkmi5cddkasp1vn4iy1k3zdgywhzj4j9lyhbv"; depends=[BiocGenerics bumphunter corrplot GenomeInfoDb GenomicRanges IRanges logistf plyr S4Vectors survival]; }; - rnaseqcomp = derive2 { name="rnaseqcomp"; version="1.32.0"; sha256="0ynlpl3x51b1ayrjs7vgd173nh7avdxc78rlfdfabvb4xx5mc0dy"; depends=[RColorBrewer]; }; - roar = derive2 { name="roar"; version="1.38.0"; sha256="0pibk6zdqlbm0rxnb95pd94v6lbg67rwmjnpfxizq7wv36pw6kdr"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicRanges IRanges rtracklayer S4Vectors SummarizedExperiment]; }; - roastgsa = derive2 { name="roastgsa"; version="1.0.0"; sha256="1dk1b0xhglnhd1x50qyr55h2kdqyma685pgdv1bmw8sl0xhq6pbh"; depends=[Biobase ggplot2 gplots limma RColorBrewer]; }; - rols = derive2 { name="rols"; version="2.30.2"; sha256="1fhrjp1sqp28gb2fp93risjrjqhs9h7w7vid1h1h7w7s34al802b"; depends=[Biobase BiocGenerics httr2 jsonlite]; }; - ropls = derive2 { name="ropls"; version="1.34.0"; sha256="1k3j1cbapzqk0qr3v4gijskp487xyz2n4lv4kia9y5pmplddxp7v"; depends=[Biobase ggplot2 MultiAssayExperiment MultiDataSet plotly SummarizedExperiment]; }; - rprimer = derive2 { name="rprimer"; version="1.6.0"; sha256="1h47cxa6zi40qir768zblkfjp04928ap1lc1axrcgvpjx70wc9k3"; depends=[Biostrings bslib DT ggplot2 IRanges mathjaxr patchwork reshape2 S4Vectors shiny shinycssloaders shinyFeedback]; }; - rpx = derive2 { name="rpx"; version="2.10.0"; sha256="03hxvq5gqchspcm2rg554i7p6zfy62ygl8509ir5ag9b6vkr5ia8"; depends=[BiocFileCache curl jsonlite RCurl xml2]; }; - rqt = derive2 { name="rqt"; version="1.28.0"; sha256="02yvwp68c0xx1wa41hfwmq5zjskqk3jg6z1hvivi6x3l5g2xfwah"; depends=[car CompQuadForm glmnet Matrix metap pls ropls RUnit SummarizedExperiment]; }; - rqubic = derive2 { name="rqubic"; version="1.48.0"; sha256="0f0if8b50ljdz2i7435knylx52wndilsvjmlj31gcqy5i3k6mz9y"; depends=[biclust Biobase BiocGenerics]; }; - rrvgo = derive2 { name="rrvgo"; version="1.14.2"; sha256="0m7zpn9c0nzsrswz5nzwsrjzmddqd109973z0crcza5zhgq5j0qh"; depends=[AnnotationDbi ggplot2 ggrepel GO_db GOSemSim pheatmap shiny tm treemap umap wordcloud]; }; - rsbml = derive2 { name="rsbml"; version="2.60.0"; sha256="0pvj0qgc6hd02g9ppfc610gvfn412rw69rxh43y4dr3n894kdm2i"; depends=[BiocGenerics graph]; }; - rsemmed = derive2 { name="rsemmed"; version="1.12.0"; sha256="114nnx0m7w0bsdlw2imn8dwbmcr30pykkhd7qxcb5md4xy2sw8b1"; depends=[dplyr igraph magrittr stringr]; }; - rtracklayer = derive2 { name="rtracklayer"; version="1.62.0"; sha256="1jxhv2fq62lz0j6kbwq43c8ggk14ccsjg0xgfqjqy941dj9ig0n2"; depends=[BiocGenerics BiocIO Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl restfulr Rsamtools S4Vectors XML XVector zlibbioc]; }; - runibic = derive2 { name="runibic"; version="1.24.0"; sha256="0rkpjm6kgmiy0as8mdnpdassvp5d0jn3iyn8dbra1i7b7bdrmcqd"; depends=[biclust Rcpp SummarizedExperiment testthat]; }; - sRACIPE = derive2 { name="sRACIPE"; version="1.18.0"; sha256="0yq3spb36r2pg5g9l32k3vinknppgz14pr4dpwcvxpilip14ha2v"; depends=[BiocGenerics ggplot2 gplots gridExtra htmlwidgets MASS RColorBrewer Rcpp reshape2 S4Vectors SummarizedExperiment umap visNetwork]; }; - sSNAPPY = derive2 { name="sSNAPPY"; version="1.6.1"; sha256="0wials3phh0w3c5bb3zg5lr52gwmx65q2s7ar1g935ghrsr3r523"; depends=[dplyr edgeR ggforce ggplot2 ggraph graphite gtools igraph magrittr org_Hs_eg_db pheatmap reshape2 rlang stringr SummarizedExperiment tibble tidyr]; }; - sSeq = derive2 { name="sSeq"; version="1.40.0"; sha256="1jn5iviaksqlknwrc8xixliysia81wyy6h04fkyz1z1kvbly1g8h"; depends=[caTools RColorBrewer]; }; - safe = derive2 { name="safe"; version="3.42.0"; sha256="1x0sx29mmhgqb0xalvd132v888qk2fzkxvz7h4873f2lzpz6yl2q"; depends=[AnnotationDbi Biobase SparseM]; }; - sagenhaft = derive2 { name="sagenhaft"; version="1.72.0"; sha256="01ccb2jw8wc36l980yqacczd2h55nipkxzcb20c04zlrwxckg0sv"; depends=[SparseM]; }; - sampleClassifier = derive2 { name="sampleClassifier"; version="1.26.0"; sha256="0qg08r50fjvfgiznh9cqwdfdpxn4qdbbfxds707wlxw40xfbndz7"; depends=[annotate e1071 ggplot2 MGFM MGFR]; }; - sangeranalyseR = derive2 { name="sangeranalyseR"; version="1.12.0"; sha256="0db96nfyw0fiwgwhflwhnr1sha56n3jhld05333xq9fkj89fzf15"; depends=[ape BiocStyle Biostrings data_table DECIPHER DT excelR ggdendro gridExtra knitr logger openxlsx phangorn plotly reshape2 rmarkdown sangerseqR seqinr shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr zeallot]; }; - sangerseqR = derive2 { name="sangerseqR"; version="1.38.0"; sha256="1vggjvxfmmm2gcyfay22wahkib15i164ic148jdps36pxapl6hi3"; depends=[Biostrings shiny stringr]; }; - sarks = derive2 { name="sarks"; version="1.14.0"; sha256="03zq00kd7kzmz6dl372fpimbh7lr4l2i661mvw634k77p1wmcl24"; depends=[binom Biostrings cluster IRanges rJava]; }; - satuRn = derive2 { name="satuRn"; version="1.10.0"; sha256="12bivj0cnp38apwi3jqmil8bwsfa96cjp5f132a5raacd2z87gqf"; depends=[BiocParallel boot ggplot2 limma locfdr Matrix pbapply SummarizedExperiment]; }; - scAnnotatR = derive2 { name="scAnnotatR"; version="1.8.0"; sha256="13wrxxdwphngi0f9vxakykk54bqngw8g38w6wkk96999lzb3p57p"; depends=[AnnotationHub ape caret data_tree dplyr e1071 ggplot2 kernlab pROC ROCR Seurat SingleCellExperiment SummarizedExperiment]; }; - scBFA = derive2 { name="scBFA"; version="1.16.0"; sha256="10b4vkc19y48w5xmx8c82yrrz2zpdg43m9rhnqfr63vlw06cgid3"; depends=[copula DESeq2 ggplot2 MASS Matrix Seurat SingleCellExperiment SummarizedExperiment zinbwave]; }; - scBubbletree = derive2 { name="scBubbletree"; version="1.4.0"; sha256="0cwmwwdbafjcrsxvjps5csffj0n1mmagccbawpwqsjqfn5j55v2j"; depends=[ape future future_apply ggplot2 ggtree patchwork proxy reshape2 scales Seurat]; }; - scCB2 = derive2 { name="scCB2"; version="1.12.0"; sha256="0v66javzwwmx0k3p9sx8r8alhjd6qmxp75vrd2nhyp9iq3gdnz7l"; depends=[doParallel DropletUtils edgeR foreach iterators Matrix rhdf5 Seurat SingleCellExperiment SummarizedExperiment]; }; - scClassify = derive2 { name="scClassify"; version="1.14.0"; sha256="1il45fr3fq520jg2hi1b729wg82vhr826x9bh6lli743sjl2rmbf"; depends=[BiocParallel Cepo cluster diptest ggplot2 ggraph hopach igraph limma Matrix mgcv minpack_lm mixtools proxy proxyC S4Vectors statmod]; }; - scDD = derive2 { name="scDD"; version="1.26.0"; sha256="15hzsq8ckw8v8ccz30kia9qr1iymmcszc9z31g5arrx1y816zgbq"; depends=[arm BiocParallel EBSeq fields ggplot2 mclust outliers S4Vectors scran SingleCellExperiment SummarizedExperiment]; }; - scDDboost = derive2 { name="scDDboost"; version="1.4.0"; sha256="11vgnxijip34yaqgnaq90pwnd1ibslfyij1lyqi3mdzrwd8a6az9"; depends=[BH BiocParallel cluster EBSeq ggplot2 mclust Oscope Rcpp RcppEigen SingleCellExperiment SummarizedExperiment]; }; - scDataviz = derive2 { name="scDataviz"; version="1.12.0"; sha256="1h8mkxbjc94x9cwpq6i26hfvd810sjdjzbf3p8v8b43c4984j0a7"; depends=[corrplot flowCore ggplot2 ggrepel MASS matrixStats RColorBrewer reshape2 S4Vectors scales Seurat SingleCellExperiment umap]; }; - scDblFinder = derive2 { name="scDblFinder"; version="1.16.0"; sha256="1f3n1m6fjx965wm2jllzk51ssj92ifxb4bln4vwk25qxd3g0bna8"; depends=[BiocGenerics BiocNeighbors BiocParallel BiocSingular bluster DelayedArray GenomeInfoDb GenomicRanges igraph IRanges MASS Matrix Rsamtools rtracklayer S4Vectors scater scran scuttle SingleCellExperiment SummarizedExperiment xgboost]; }; - scDesign3 = derive2 { name="scDesign3"; version="1.0.1"; sha256="024jcb3nhy7q62vf9xg6d0bq9risq4jdak5xhd32yxyv7mn3bp3c"; depends=[BiocParallel dplyr gamlss gamlss_dist ggplot2 irlba Matrix matrixStats mclust mgcv mvtnorm pbmcapply rvinecopulib SingleCellExperiment SummarizedExperiment tibble umap viridis]; }; - scFeatureFilter = derive2 { name="scFeatureFilter"; version="1.22.0"; sha256="0kh9m9fxfankkhy4f9f30smpdzwf62s0brdqwg2g75cyj8jxg9vv"; depends=[dplyr ggplot2 magrittr rlang tibble]; }; - scFeatures = derive2 { name="scFeatures"; version="1.3.2"; sha256="191iff92v8k7s9h6bx0fidn8125x5yqyk7hvmj9mynwn5ssr76rx"; depends=[ape AUCell BiocParallel cli DelayedArray DelayedMatrixStats dplyr DT EnsDb_Hsapiens_v79 EnsDb_Mmusculus_v79 ensembldb glue GSVA gtools MatrixGenerics msigdbr proxyC reshape2 rmarkdown Seurat SingleCellSignalR spatstat_explore spatstat_geom tidyr]; }; - scGPS = derive2 { name="scGPS"; version="1.16.0"; sha256="1xp43by8p1hfj10ypiqz3lv7knyz6pf9dn9hfmjwv1168qx42c1s"; depends=[caret DESeq2 dplyr dynamicTreeCut fastcluster ggplot2 glmnet locfit Rcpp RcppArmadillo RcppParallel SingleCellExperiment SummarizedExperiment]; }; - scHOT = derive2 { name="scHOT"; version="1.14.0"; sha256="0r3018i7pfa3l1cg248ry7pgxkizml3nyb10nk3jhf8aikigxpvl"; depends=[BiocParallel ggforce ggplot2 igraph IRanges Matrix reshape S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scMET = derive2 { name="scMET"; version="1.4.0"; sha256="0akz032hrzdv2q5d6snhv1v1cw95w1d8lr2jdg93wajbl6c8x45l"; depends=[assertthat BH BiocStyle coda cowplot data_table dplyr ggplot2 logitnorm MASS Matrix matrixStats Rcpp RcppEigen RcppParallel rstan rstantools S4Vectors SingleCellExperiment StanHeaders SummarizedExperiment VGAM viridis]; }; - scMerge = derive2 { name="scMerge"; version="1.18.0"; sha256="1j5a95sz00hc3k09gkmd0icpcxfdqws6rw64n3p66v18dpkmngw4"; depends=[batchelor BiocNeighbors BiocParallel BiocSingular cluster cvTools DelayedArray DelayedMatrixStats distr igraph M3Drop proxyC ruv S4Vectors scater scran SingleCellExperiment SummarizedExperiment]; }; - scPCA = derive2 { name="scPCA"; version="1.16.0"; sha256="06vwsdly812h80bnxdl52bzymib55dw83ahg7g18dzqm141gazf2"; depends=[assertthat BiocParallel cluster coop DelayedArray dplyr elasticnet kernlab Matrix MatrixGenerics matrixStats origami purrr Rdpack RSpectra ScaledMatrix sparsepca stringr tibble]; }; - scPipe = derive2 { name="scPipe"; version="2.2.0"; sha256="0rxfni95149vrjwlgygkxbn70fd21vz53srvz7l74lwrg5jrk21g"; depends=[AnnotationDbi basilisk BiocGenerics biomaRt Biostrings data_table dplyr DropletUtils flexmix GenomicAlignments GenomicRanges GGally ggplot2 glue hash IRanges magrittr MASS Matrix mclust MultiAssayExperiment org_Hs_eg_db org_Mm_eg_db purrr Rcpp reshape reticulate Rhtslib rlang robustbase Rsamtools Rsubread rtracklayer S4Vectors scales SingleCellExperiment stringr SummarizedExperiment testthat tibble tidyr vctrs zlibbioc]; }; - scRNAseqApp = derive2 { name="scRNAseqApp"; version="1.2.2"; sha256="18780dicp4dl8fqnmvsn345lkcjn8398qbpd1iapiyww7yychij9"; depends=[bibtex bslib circlize ComplexHeatmap data_table DT GenomeInfoDb GenomicRanges ggdendro ggforce ggplot2 ggrepel ggridges gridExtra hdf5r htmltools IRanges jsonlite magrittr patchwork plotly RColorBrewer RefManageR Rsamtools rtracklayer S4Vectors scales scrypt Seurat SeuratObject shiny shinyhelper shinymanager SingleCellExperiment slingshot sortable xfun xml2]; }; - scReClassify = derive2 { name="scReClassify"; version="1.8.0"; sha256="11cr0ri73c1khimcwvr125hpllmchm8s78qql838nzdm92w854ph"; depends=[e1071 randomForest SingleCellExperiment SummarizedExperiment]; }; - scRecover = derive2 { name="scRecover"; version="1.18.0"; sha256="17sqn7dqwis3xx230hw8cvajan4ravd4kkzkgwm6jjph7rahix1l"; depends=[bbmle BiocParallel doParallel foreach gamlss kernlab MASS Matrix penalized preseqR pscl rsvd SAVER]; }; - scRepertoire = derive2 { name="scRepertoire"; version="1.12.0"; sha256="1wgs8dv5zl82iciy86w5ws1gq8v2piklcifbw7gmbw60kijyr2l1"; depends=[doParallel dplyr ggalluvial ggplot2 ggraph igraph plyr powerTCR reshape2 rlang SeuratObject SingleCellExperiment stringdist stringr SummarizedExperiment tidygraph vegan]; }; - scShapes = derive2 { name="scShapes"; version="1.8.0"; sha256="16ixxrg32hwb22vqfskg6amk9axrz8f9x8q6cqnhz5pg2ix79yw9"; depends=[BiocParallel dgof emdbook magrittr MASS Matrix pscl VGAM]; }; - scTGIF = derive2 { name="scTGIF"; version="1.16.0"; sha256="1rxzqs3ggxg21yxl7drvrix106y8z798xs57jc4jpwvvbbzi89r0"; depends=[Biobase BiocStyle ggplot2 GSEABase igraph knitr msigdbr nnTensor plotly RColorBrewer Rcpp rmarkdown S4Vectors scales schex SingleCellExperiment SummarizedExperiment tagcloud tibble]; }; - scTHI = derive2 { name="scTHI"; version="1.14.0"; sha256="1iks7b6sx6b0l3037h8yxnwd6025wh6almkiwny356pwm45vzdqx"; depends=[BiocParallel Rtsne]; }; - scTensor = derive2 { name="scTensor"; version="2.12.0"; sha256="1lq1gq3pl09g0ky4nx191qja3pdcww6qazg6nrfssx4jxcc0q97i"; depends=[abind AnnotationDbi AnnotationHub BiocManager BiocStyle Category ccTensor checkmate crayon DOSE ggplot2 GOstats heatmaply igraph knitr MeSHDbi meshr nnTensor outliers plotly plotrix reactome_db ReactomePA rmarkdown RSQLite rTensor S4Vectors schex SingleCellExperiment SummarizedExperiment tagcloud visNetwork]; }; - scTreeViz = derive2 { name="scTreeViz"; version="1.8.0"; sha256="06js9576w3nlqfl58p7wmdinymlxkf62zl4lxjhzyy6aaqbdqcmp"; depends=[clustree data_table digest epivizr epivizrData epivizrServer ggplot2 ggraph httr igraph Matrix Rtsne S4Vectors scater scran Seurat SingleCellExperiment SummarizedExperiment sys]; }; - scanMiR = derive2 { name="scanMiR"; version="1.8.2"; sha256="10czwd1b631g6xbcykvih94vgij29kkl6xbc0y9lv9023gzxmplb"; depends=[BiocParallel Biostrings cowplot data_table GenomeInfoDb GenomicRanges ggplot2 IRanges S4Vectors seqLogo stringi]; }; - scanMiRApp = derive2 { name="scanMiRApp"; version="1.8.0"; sha256="1rinvm4m1fr8yrnk75qnjqak2wybjzivj32bhkypbjlmjfippff9"; depends=[AnnotationDbi AnnotationFilter AnnotationHub BiocParallel Biostrings data_table digest DT ensembldb fst GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 htmlwidgets IRanges Matrix plotly rintrojs rtracklayer S4Vectors scanMiR scanMiRData shiny shinycssloaders shinydashboard shinyjqui waiter]; }; - scater = derive2 { name="scater"; version="1.30.1"; sha256="06a4nxxsgmi435m06ir401w4fbrh0xdgh6mkv3i7vw001yrbrfcx"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray ggbeeswarm ggplot2 ggrastr ggrepel Matrix MatrixGenerics pheatmap RColorBrewer RcppML rlang Rtsne S4Vectors scuttle SingleCellExperiment SummarizedExperiment uwot viridis]; }; - scatterHatch = derive2 { name="scatterHatch"; version="1.8.0"; sha256="1skl8v6idxdb6qqmljfvp4693r1whyddimpcg8m7rsd8cbgq3fal"; depends=[ggplot2 plyr spatstat_geom]; }; - sccomp = derive2 { name="sccomp"; version="1.6.0"; sha256="19cpgif7zjlzbvnqflyzi3gcl29v91xan0v45y5gyisxp1p23x6i"; depends=[BH boot dplyr forcats ggplot2 ggrepel glue lifecycle magrittr patchwork purrr Rcpp RcppEigen RcppParallel readr rlang rstan rstantools scales SeuratObject SingleCellExperiment StanHeaders stringr tibble tidyr tidyselect]; }; - scde = derive2 { name="scde"; version="2.30.0"; sha256="0l7sfqj6kfpq0jdngxc4n87pvqk8rxd0rr6jvz5hhq4hmlm417hs"; depends=[BiocParallel Cairo edgeR extRemes flexmix MASS mgcv nnet pcaMethods quantreg RColorBrewer Rcpp RcppArmadillo rjson RMTstat Rook]; }; - scds = derive2 { name="scds"; version="1.18.0"; sha256="0cmzvc1m29ijhzs2p407bhhxfqbflzsnrk7nq0jshjyw6v6pkfn0"; depends=[dplyr Matrix pROC S4Vectors SingleCellExperiment SummarizedExperiment xgboost]; }; - schex = derive2 { name="schex"; version="1.16.1"; sha256="1bfa0s0d68y0kidknd9finf7snp7gfmmrxac2f1sx1i1fggm2nb3"; depends=[cluster concaveman dplyr entropy ggforce ggplot2 hexbin rlang SingleCellExperiment]; }; - scider = derive2 { name="scider"; version="1.0.0"; sha256="1rl7h5gxvd6ga3ylnvslarxhd7njf64izx8r8digl61gm866cm0b"; depends=[ggplot2 igraph isoband janitor knitr lwgeom pheatmap plotly rlang S4Vectors sf shiny SpatialExperiment spatstat_explore spatstat_geom SummarizedExperiment]; }; - scifer = derive2 { name="scifer"; version="1.4.0"; sha256="1h9py0l8glcpwb2rwqksq2p4gs7pp754xgfcm6zcmik5jxl9zmyb"; depends=[Biostrings data_table DECIPHER dplyr flowCore ggplot2 gridExtra kableExtra knitr plyr rlang rmarkdown sangerseqR scales stringr tibble]; }; - scmap = derive2 { name="scmap"; version="1.24.0"; sha256="1sd5ixs8fbiqqp1p4p505l1f0lncmagkhzh4xrk8wrca6db6k6d8"; depends=[Biobase BiocGenerics dplyr e1071 ggplot2 googleVis matrixStats proxy randomForest Rcpp RcppArmadillo reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scmeth = derive2 { name="scmeth"; version="1.22.0"; sha256="02v1dn1lvnvlig02wl9rqal3qz7hllfpyzjf1mwyasr7qk8wbn0p"; depends=[AnnotationHub annotatr Biostrings BSgenome bsseq DelayedArray DT GenomeInfoDb GenomicRanges HDF5Array knitr reshape2 rmarkdown SummarizedExperiment]; }; - scone = derive2 { name="scone"; version="1.26.0"; sha256="1y0blhh75hb60h9jmvz2naqfzky4zgw5gn81fbj74jfph9y712lp"; depends=[aroma_light BiocParallel boot class cluster compositions diptest edgeR fpc gplots hexbin limma MatrixGenerics matrixStats mixtools rARPACK RColorBrewer rhdf5 RUVSeq SingleCellExperiment SummarizedExperiment]; }; - scoreInvHap = derive2 { name="scoreInvHap"; version="1.24.0"; sha256="0j1gn1vwxsmg0h1znc2cqa4q3qx9fw4bnxcdmwcd7fpk860ifa49"; depends=[BiocParallel Biostrings GenomicRanges snpStats SummarizedExperiment VariantAnnotation]; }; - scp = derive2 { name="scp"; version="1.12.0"; sha256="0xcm3hw6fz62fm3rvwcmh6mn0pi38hzyprrrnk0xw0y75yh03czh"; depends=[dplyr magrittr matrixStats MsCoreUtils MultiAssayExperiment QFeatures S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scran = derive2 { name="scran"; version="1.30.2"; sha256="06b454ydd8n8xbswxf1hacm3g2nr0ik0gg08pr7crgnsm0r3vpvs"; depends=[beachmat BH BiocGenerics BiocParallel BiocSingular bluster DelayedArray DelayedMatrixStats dqrng edgeR igraph limma Matrix metapod Rcpp S4Vectors scuttle SingleCellExperiment statmod SummarizedExperiment]; }; - screenCounter = derive2 { name="screenCounter"; version="1.2.0"; sha256="1yk81k7fr71mb1q984czw9iaddhd9brv4raag5b8h6hgsca516d9"; depends=[BiocParallel Rcpp S4Vectors SummarizedExperiment zlibbioc]; }; - scruff = derive2 { name="scruff"; version="1.20.0"; sha256="0zn4pf3pd2rss7z7p3q55fh8345am8bd1dcapchwzc02k9szc466"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 ggthemes parallelly plyr Rsamtools Rsubread rtracklayer S4Vectors scales ShortRead SingleCellExperiment stringdist SummarizedExperiment]; }; - scry = derive2 { name="scry"; version="1.14.0"; sha256="0hbdsjsn0jl0dr2ly5vx0wb4bnz7nl15kkypryywjvis9rdasjj3"; depends=[BiocSingular DelayedArray glmpca Matrix SingleCellExperiment SummarizedExperiment]; }; - scuttle = derive2 { name="scuttle"; version="1.12.0"; sha256="090arfacfs09x7g60qxz4bj2gqb97y3kmhafywkgnrj7pz1z0qzq"; depends=[beachmat BiocGenerics BiocParallel DelayedArray DelayedMatrixStats GenomicRanges Matrix Rcpp S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scviR = derive2 { name="scviR"; version="1.2.0"; sha256="1naz8xampnig1pjjjsk8mabsqdys2idpjnplgj33qj7ivkwxw58a"; depends=[basilisk BiocFileCache limma MatrixGenerics pheatmap reticulate S4Vectors scater shiny SingleCellExperiment SummarizedExperiment]; }; - sechm = derive2 { name="sechm"; version="1.10.0"; sha256="19qb6qvzgvwd7y1nmvw9q8ch8ql27f3hhxk42w805l4r4d7xrkbk"; depends=[circlize ComplexHeatmap matrixStats randomcoloR S4Vectors seriation SummarizedExperiment]; }; - segmentSeq = derive2 { name="segmentSeq"; version="2.36.0"; sha256="1w037ylknsraj96j1bcv671zx3fqcck666pakmqgjprlp97k5sdy"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; }; - segmenter = derive2 { name="segmenter"; version="1.8.0"; sha256="19zd2a8rghclyvb7561qijr0g1c32dqcb73bpdjwaf94aj5jfdb1"; depends=[bamsignals ChIPseeker chromhmmData ComplexHeatmap GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; - selectKSigs = derive2 { name="selectKSigs"; version="1.14.0"; sha256="05r2w30ffsgs99bclfzfs4dks7wpfapd806cfm5ls78pqdcw067b"; depends=[gtools HiLDA magrittr Rcpp]; }; - semisup = derive2 { name="semisup"; version="1.26.0"; sha256="0xk3czwgw71rfaxix2mqcszcn1vzcdkakmcpfdgzz1zyhpms5c59"; depends=[VGAM]; }; - seq_hotSPOT = derive2 { name="seq.hotSPOT"; version="1.2.0"; sha256="0rv1sx7q7ycxxmfiwhl98sdd2qjqgswl7nkbqbnj35610xhx3n62"; depends=[hash R_utils]; }; - seq2pathway = derive2 { name="seq2pathway"; version="1.34.0"; sha256="1d3sshrxdk0mx2hmkjf1lc3mr9d6drhr6q8pm531rrm0rdckizrx"; depends=[biomaRt GenomicRanges GSA nnet seq2pathway_data WGCNA]; }; - seqArchR = derive2 { name="seqArchR"; version="1.6.0"; sha256="1xnzh4s9zn31i913hqy7aaw1x6q1hmzsr7lil8nfmysmgl1vpahf"; depends=[BiocParallel Biostrings cli cluster cvTools fpc ggplot2 ggseqlogo MASS Matrix matrixStats prettyunits reshape2 reticulate]; }; - seqArchRplus = derive2 { name="seqArchRplus"; version="1.2.0"; sha256="0j0f6g77asz2kb49ram3vgsrglqln24pmywcdfqdlaahsy0jihdg"; depends=[BiocParallel Biostrings BSgenome ChIPseeker cli clusterProfiler cowplot factoextra GenomeInfoDb GenomicRanges ggimage ggplot2 gridExtra heatmaps IRanges magick RColorBrewer S4Vectors scales seqArchR seqPattern]; }; - seqCAT = derive2 { name="seqCAT"; version="1.24.0"; sha256="1jkqbx7yn0siywbll8arh0iqar6zywj430s7ba6pgwbxjpfbxq48"; depends=[dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges rlang rtracklayer S4Vectors scales SummarizedExperiment tidyr VariantAnnotation]; }; - seqCNA = derive2 { name="seqCNA"; version="1.48.0"; sha256="0qqkpgpjj2rywr1y1qj3ffjlxak7fg15jkznz62r7k6r794z45ma"; depends=[adehabitatLT doSNOW GLAD seqCNA_annot]; }; - seqLogo = derive2 { name="seqLogo"; version="1.68.0"; sha256="106359wn4v0m53b33x4zjsyjsj4j8h7bnvd1whamsig982h6szp2"; depends=[]; }; - seqPattern = derive2 { name="seqPattern"; version="1.34.0"; sha256="0rs9dy540d4agp7fc8glbrcnly4s6qcxqsq4yv8y555bbdld6dv0"; depends=[Biostrings GenomicRanges IRanges KernSmooth plotrix]; }; - seqTools = derive2 { name="seqTools"; version="1.36.0"; sha256="110mka5zbvry1d0dz1lmw0kn85xm3k4k8lrdj6qdh5ckk82k342m"; depends=[zlibbioc]; }; - seqbias = derive2 { name="seqbias"; version="1.50.0"; sha256="18pdpi855y1hhka96xc5886nqffjn1jhz9jr9p305iikdrsvmjp1"; depends=[Biostrings GenomicRanges Rhtslib zlibbioc]; }; - seqcombo = derive2 { name="seqcombo"; version="1.24.0"; sha256="1xvvfqhip0zvk2dz2r473qlz4r9adm2pylcbgl6xw0r6yhw06y4a"; depends=[ggplot2 igraph yulab_utils]; }; - seqsetvis = derive2 { name="seqsetvis"; version="1.22.1"; sha256="0lbk8pvzmsz1qw04b2sgqjf0pnf7qjsvxvlnm381jr0fi4n6k8ml"; depends=[cowplot data_table eulerr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 ggplotify IRanges limma pbapply pbmcapply png RColorBrewer Rsamtools rtracklayer S4Vectors scales UpSetR]; }; - sesame = derive2 { name="sesame"; version="1.20.0"; sha256="0yh4mrsj3pqhjkrq5dwmcpcqwixs0pmjy7dfa3cr0mf52fgzcvmr"; depends=[BiocFileCache BiocParallel dplyr GenomeInfoDb GenomicRanges ggplot2 illuminaio IRanges MASS preprocessCore readr reshape2 S4Vectors sesameData stringr SummarizedExperiment tibble wheatmap]; }; - sevenC = derive2 { name="sevenC"; version="1.22.0"; sha256="1k9ss678q0i5hky15d0d577pk5irbnfn7w4s2gbpr10kbacq7n42"; depends=[BiocGenerics boot data_table GenomeInfoDb GenomicRanges InteractionSet IRanges purrr readr rtracklayer S4Vectors]; }; - sevenbridges = derive2 { name="sevenbridges"; version="1.32.0"; sha256="048jsr7a64jijspxsxa3k1wja8h4kdmmdy3g70i88gi804k789rb"; depends=[curl data_table docopt httr jsonlite objectProperties S4Vectors stringr uuid yaml]; }; - shinyMethyl = derive2 { name="shinyMethyl"; version="1.38.0"; sha256="1gkj15q1rxvsdzbsp3gkk02kvvx0kq4wsqycf3ln1bszb9688jw6"; depends=[Biobase BiocGenerics htmltools MatrixGenerics minfi RColorBrewer shiny]; }; - shinyepico = derive2 { name="shinyepico"; version="1.10.0"; sha256="16lfc6vgk03qhiqq94f0w943b5k3nr803rcd6kywr4ldpi4ns4q9"; depends=[data_table doParallel dplyr DT foreach GenomicRanges ggplot2 gplots heatmaply limma minfi plotly reshape2 rlang rmarkdown rtracklayer shiny shinycssloaders shinyjs shinythemes shinyWidgets statmod tidyr zip]; }; - sigFeature = derive2 { name="sigFeature"; version="1.20.0"; sha256="12pxbq0dn6z3avsq468ixkn09iaark95s2l0gmjh3jcmd1dp03zz"; depends=[BiocParallel biocViews e1071 Matrix nlme openxlsx pheatmap RColorBrewer SparseM SummarizedExperiment]; }; - siggenes = derive2 { name="siggenes"; version="1.76.0"; sha256="0jzxwg28ih1i0f7hal99g60zply0g613b4wrjsbv738cmlsai2kc"; depends=[Biobase multtest scrime]; }; - sights = derive2 { name="sights"; version="1.28.0"; sha256="1i5qxhcrvgha5rwhvg2anm4q3rzpgyw95q3qmgfhfgbdjmwwm5qr"; depends=[ggplot2 lattice MASS qvalue reshape2]; }; - signatureSearch = derive2 { name="signatureSearch"; version="1.16.0"; sha256="19hgqq49y6kg9zjjmx6apjqr3mj6f8cbf7xd78gaigyd62w060rj"; depends=[AnnotationDbi BiocGenerics BiocParallel clusterProfiler data_table DelayedArray DOSE dplyr ExperimentHub fastmatch fgsea ggplot2 GSEABase HDF5Array magrittr Matrix org_Hs_eg_db qvalue Rcpp reactome_db readr reshape2 rhdf5 RSQLite scales SummarizedExperiment tibble visNetwork]; }; - signeR = derive2 { name="signeR"; version="2.4.0"; sha256="1890svrwn8n4ysrj5mivh8xyyfgjxyka3jmf6fml297a2lj49gkg"; depends=[ada BiocFileCache BiocGenerics Biostrings BSgenome bsplus class clue cowplot dplyr DT e1071 future future_apply GenomeInfoDb GenomicRanges ggplot2 ggpubr glmnet IRanges kknn listenv magrittr MASS maxstat nloptr NMF pheatmap PMCMRplus ppclust pROC proxy pvclust randomForest RColorBrewer Rcpp RcppArmadillo readr reshape2 rtracklayer scales shiny shinycssloaders shinydashboard shinyWidgets survival survivalAnalysis survminer tibble tidyr VariantAnnotation VGAM]; }; - signifinder = derive2 { name="signifinder"; version="1.4.0"; sha256="1yk44if93615vzh31r22xb3l6dgyirlw9v6zachd1d6i9zh2l2rk"; depends=[AnnotationDbi BiocGenerics ComplexHeatmap consensusOV cowplot DGEobj_utils dplyr ensembldb ggplot2 ggridges GSVA IRanges magrittr matrixStats maxstat openair org_Hs_eg_db patchwork RColorBrewer SpatialExperiment SummarizedExperiment survival survminer TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene viridis]; }; - sigsquared = derive2 { name="sigsquared"; version="1.34.0"; sha256="1jsagrphgxlgznzf9cin6nfm6r22pvblb308ls34fps4vf4cnn1v"; depends=[Biobase survival]; }; - similaRpeak = derive2 { name="similaRpeak"; version="1.34.0"; sha256="1w9nrc07v8vn256d9g2ybgr4k3vw86qvp77z7k7n16fdspq1iq2j"; depends=[R6]; }; - simona = derive2 { name="simona"; version="1.0.10"; sha256="1avyyj9r0slpnyalsd570mv4h19wmriz7wa2jkbh6yw714crq55x"; depends=[circlize ComplexHeatmap GetoptLong GlobalOptions igraph matrixStats Polychrome Rcpp S4Vectors shiny xml2]; }; - simpleSeg = derive2 { name="simpleSeg"; version="1.4.1"; sha256="1x1r76gv57g2bjcla5s47isr47nzvwcr6zkid1pjpvifnq9il74c"; depends=[BiocParallel cytomapper EBImage S4Vectors spatstat_geom SummarizedExperiment terra]; }; - simplifyEnrichment = derive2 { name="simplifyEnrichment"; version="1.12.0"; sha256="0qhrlhf881mi2v0n0y410c0bf2cm3imrlglq8argnw86n9xj51pw"; depends=[AnnotationDbi BiocGenerics circlize clue cluster colorspace ComplexHeatmap digest GetoptLong GlobalOptions GO_db GOSemSim Matrix org_Hs_eg_db proxyC slam tm]; }; - sincell = derive2 { name="sincell"; version="1.34.0"; sha256="0am0scxjs93z1awrv4ydj11c21c69zq0mf41mimjdpcpizfhy326"; depends=[cluster entropy fastICA fields ggplot2 igraph MASS proxy Rcpp reshape2 Rtsne scatterplot3d statmod TSP]; }; - single = derive2 { name="single"; version="1.6.0"; sha256="06q54dnlfw1n2sw2drybj3z2qf7i3fr6kdcn9gikag5m798d7ggs"; depends=[BiocGenerics Biostrings dplyr GenomicAlignments IRanges reshape2 rlang Rsamtools stringr tidyr]; }; - singleCellTK = derive2 { name="singleCellTK"; version="2.12.2"; sha256="1yw727m67i3mrrhq9yzww0c2ssacvqm1jcrxn5vagn0f5z1kml8f"; depends=[anndata AnnotationHub ape batchelor Biobase BiocParallel celda celldex circlize cluster colorspace colourpicker ComplexHeatmap cowplot data_table DelayedArray DelayedMatrixStats DESeq2 dplyr DropletUtils DT eds enrichR ensembldb ExperimentHub fields ggplot2 ggplotify ggrepel ggtree gridExtra GSEABase GSVA GSVAdata igraph KernSmooth limma magrittr MAST Matrix matrixStats metap msigdbr multtest plotly plyr R_utils reshape2 reticulate rlang rmarkdown ROCR Rtsne S4Vectors scater scDblFinder scds scMerge scran scRNAseq scuttle Seurat shiny shinyalert shinycssloaders shinyjs SingleCellExperiment SingleR SoupX SummarizedExperiment sva TENxPBMCData tibble TrajectoryUtils TSCAN tximport VAM withr yaml zellkonverter zinbwave]; }; - singscore = derive2 { name="singscore"; version="1.22.0"; sha256="0hafzbhbik1512pisjvnnzmy8pl2shrgra6l06kpvsrczkqlmi04"; depends=[Biobase BiocParallel edgeR ggplot2 ggrepel GSEABase magrittr matrixStats plotly plyr RColorBrewer reshape reshape2 S4Vectors SummarizedExperiment tidyr]; }; - sitadela = derive2 { name="sitadela"; version="1.10.0"; sha256="0rfp13qciw5nygq89zxf8jifvd1xws28c9x6pgplgbgr9mas5i2f"; depends=[Biobase BiocGenerics biomaRt Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools RSQLite rtracklayer S4Vectors]; }; - sitePath = derive2 { name="sitePath"; version="1.18.0"; sha256="17dqfv9p6yskln4ir7g4li3imzvn7sk5a36v8x2fgkq5w7cx2dh4"; depends=[ape aplot ggplot2 ggrepel ggtree gridExtra RColorBrewer Rcpp seqinr tidytree]; }; - sizepower = derive2 { name="sizepower"; version="1.72.0"; sha256="03w4jxck4gxrsi365mnanq7h7hic7vdv1db4i0qy2ryfgcc82dgx"; depends=[]; }; - skewr = derive2 { name="skewr"; version="1.34.0"; sha256="0d381gg30vn8nad0y6h5rvrmilpr9k2aasnqqmalvh228pyysd7j"; depends=[IlluminaHumanMethylation450kmanifest methylumi minfi mixsmsn RColorBrewer S4Vectors wateRmelon]; }; - slalom = derive2 { name="slalom"; version="1.24.0"; sha256="0d5x54057z7hbdv340j114p9j8wfjd3qrr4xr22774yir0k4n0g1"; depends=[BH ggplot2 GSEABase Rcpp RcppArmadillo rsvd SingleCellExperiment SummarizedExperiment]; }; - slingshot = derive2 { name="slingshot"; version="2.10.0"; sha256="0q3j0jpc4mnmjb3xha5cmfhk1qdr1jiz7kdghznk4zqxn4bchc1d"; depends=[igraph matrixStats princurve S4Vectors SingleCellExperiment SummarizedExperiment TrajectoryUtils]; }; - snapCGH = derive2 { name="snapCGH"; version="1.72.0"; sha256="0knjspxzc3z5dhx0a6kx9rkic85w65l84vy552x5bv8jzxkcwrsj"; depends=[aCGH cluster DNAcopy GLAD limma tilingArray]; }; - snapcount = derive2 { name="snapcount"; version="1.14.0"; sha256="0yi2crj3yp23wdrxc4gv8k0fika0y2h0n968w26d243jc1yj1y8c"; depends=[assertthat data_table GenomicRanges httr IRanges jsonlite magrittr Matrix purrr R6 rlang stringr SummarizedExperiment]; }; - snifter = derive2 { name="snifter"; version="1.12.0"; sha256="1y6j4m06c7b2fkwmqzjgn08vr48sqqfnrglikl5ric8w7avww192"; depends=[assertthat basilisk irlba reticulate]; }; - snm = derive2 { name="snm"; version="1.50.0"; sha256="1vgm1pm2yjh1v2bj3ibw9bgsqin4m7x0vj032l6rn2yyiwc8qask"; depends=[corpcor lme4]; }; - snpStats = derive2 { name="snpStats"; version="1.52.0"; sha256="0a4kyv93ljv7n62ghx66l81q6sw24llr0998nsalidyws1wldbyr"; depends=[BiocGenerics Matrix survival zlibbioc]; }; - soGGi = derive2 { name="soGGi"; version="1.34.0"; sha256="0rg1dy94d5vskzf0s6z0iwzl59ag4sa7iwxxr9v5rd25hwaqn552"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - spaSim = derive2 { name="spaSim"; version="1.4.0"; sha256="0f26rqm8b6qdcbzxk3wwnnc3gy7w69hp91b5gxjsy9dfdx19dzbk"; depends=[dplyr ggplot2 RANN SpatialExperiment spatstat_geom spatstat_random SummarizedExperiment]; }; - sparrow = derive2 { name="sparrow"; version="1.8.0"; sha256="0vqn6ag78zld3v1n5ac9vch8ja6k7dnv90ba3l4m51bw1gcdw3ba"; depends=[babelgene BiocGenerics BiocParallel BiocSet checkmate circlize ComplexHeatmap data_table DelayedMatrixStats edgeR ggplot2 GSEABase irlba limma Matrix plotly viridis]; }; - sparseMatrixStats = derive2 { name="sparseMatrixStats"; version="1.14.0"; sha256="0r2jxwha2xjp8iy7al85s5vib4xvl47gmlbbvvjj4wnz2gfzic9r"; depends=[Matrix MatrixGenerics matrixStats Rcpp]; }; - sparsenetgls = derive2 { name="sparsenetgls"; version="1.20.0"; sha256="1wlhc09divvwg0l75mrhridypkrhn4dmvrak6lhqd0y42byz5w5m"; depends=[glmnet huge MASS Matrix]; }; - spatialDE = derive2 { name="spatialDE"; version="1.8.1"; sha256="1b7jv0p8wba0jw94jwjiph7ipr9bk018ib60mlkymsisjm6gn104"; depends=[basilisk checkmate ggplot2 ggrepel gridExtra Matrix reticulate scales SpatialExperiment SummarizedExperiment]; }; - spatialHeatmap = derive2 { name="spatialHeatmap"; version="2.8.5"; sha256="1k1f3j5hibnagssn4nvbfrb45qi9rnf6ksrrm20l99vhnl2m8pip"; depends=[data_table dplyr edgeR genefilter ggplot2 ggplotify gplots gridExtra grImport igraph Matrix reshape2 rsvg S4Vectors scater scran scuttle shiny shinydashboard SingleCellExperiment spsComps SummarizedExperiment tibble xml2]; }; - spatzie = derive2 { name="spatzie"; version="1.8.0"; sha256="1nrycrma72znddnw492jrl7fcm4a98hgppwa3gj7pzfrnrg6k1d8"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicFeatures GenomicInteractions GenomicRanges ggplot2 IRanges MatrixGenerics matrixStats motifmatchr S4Vectors SummarizedExperiment TFBSTools]; }; - specL = derive2 { name="specL"; version="1.36.0"; sha256="1yd8yrz588m4y4ifwmn2vw9q2db727lsyypgql0kdbi9bd9nmr5a"; depends=[DBI protViz RSQLite seqinr]; }; - speckle = derive2 { name="speckle"; version="1.2.0"; sha256="1pxpjgsrdn0g6m3xkav3gbnap2nqmp0mnm630psy0hj0f36b9d3s"; depends=[edgeR ggplot2 limma Seurat SingleCellExperiment]; }; - spicyR = derive2 { name="spicyR"; version="1.14.3"; sha256="1hbs7wgblsnlh2i8wpa1cm688f56cbk29ayxanw6g1kvvnf5xvdm"; depends=[BiocGenerics BiocParallel ClassifyR concaveman data_table dplyr ggforce ggplot2 IRanges lmerTest mgcv pheatmap rlang S4Vectors scam SingleCellExperiment SpatialExperiment spatstat_explore spatstat_geom SummarizedExperiment tibble tidyr]; }; - spikeLI = derive2 { name="spikeLI"; version="2.62.0"; sha256="0c3m4jmi2bv9cm7nzm8fq7bgwldf3z6fy015sakslndcjwbw8fbn"; depends=[]; }; - spiky = derive2 { name="spiky"; version="1.8.0"; sha256="11ycl4848xgbjrjfj4gzzig6rj88xxqb845bg5f7c0mhha12g3a3"; depends=[bamlss Biostrings BlandAltmanLeh BSgenome GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges Rsamtools S4Vectors scales]; }; - spkTools = derive2 { name="spkTools"; version="1.58.0"; sha256="1cl2ii1bb7j7j3vck0gb8livfrw749kjrj9q9w1117i8pgpl7454"; depends=[Biobase gtools RColorBrewer]; }; - splatter = derive2 { name="splatter"; version="1.26.0"; sha256="1h4c7rcchss01ds1zd2rqkghcpjclziriichrgrkh9rvmsajkpip"; depends=[BiocGenerics BiocParallel checkmate crayon edgeR fitdistrplus locfit matrixStats rlang S4Vectors scuttle SingleCellExperiment SummarizedExperiment withr]; }; - splineTimeR = derive2 { name="splineTimeR"; version="1.30.0"; sha256="1cqlb6ij4qlx5lj10m3z1cb5gbkmszmzz7k1xmnjri7hl72hsf8g"; depends=[Biobase FIs GeneNet GSEABase gtools igraph limma longitudinal]; }; - splots = derive2 { name="splots"; version="1.68.0"; sha256="16751hhy09nbzrhv38jy28q2x68qi3cwh3dacgmf2x7l7zz7dh4n"; depends=[RColorBrewer]; }; - spqn = derive2 { name="spqn"; version="1.14.0"; sha256="07nhy0pjlxnfvdshl9nmh18m83iv3xsi66k6dp6n0hgjdjyfy28b"; depends=[BiocGenerics ggplot2 ggridges matrixStats SummarizedExperiment]; }; - srnadiff = derive2 { name="srnadiff"; version="1.22.2"; sha256="06hdjrjqca3933k6knbznjhnljh11rsm4cgqg4ccwi1hhlnh7z8m"; depends=[baySeq BiocManager BiocParallel BiocStyle DESeq2 devtools edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - ssPATHS = derive2 { name="ssPATHS"; version="1.16.0"; sha256="0ajhmgj9w8ajz2rf6ilwvl61daf0kf1hcibfndrgnkjpnb45yp44"; depends=[dml MESS ROCR SummarizedExperiment]; }; - sscu = derive2 { name="sscu"; version="2.32.0"; sha256="0ialywasrvh2x6pmafjikdsr8q4dj0i4a9yqaw7g4d9ns6mipqd8"; depends=[BiocGenerics Biostrings seqinr]; }; - ssize = derive2 { name="ssize"; version="1.76.0"; sha256="0bn41cjqkd5zmzhbhqnq9xf5bx4gk70ah1bvhldg831268a0ddhw"; depends=[gdata xtable]; }; - ssrch = derive2 { name="ssrch"; version="1.18.0"; sha256="0s23pakhln9ks5w4bv6ydh47ycy78il9nn5384vfws7v5w855mk9"; depends=[DT shiny]; }; - ssviz = derive2 { name="ssviz"; version="1.36.0"; sha256="02xdg6mf94f3dchzapvlck16dkk2xrkbryz28llvjcxxnlbp3kab"; depends=[Biostrings ggplot2 RColorBrewer reshape Rsamtools]; }; - stJoincount = derive2 { name="stJoincount"; version="1.4.0"; sha256="0iy7mqxa8bnai72r10gqsva7x52s847fz4yj9cpivb05mxd0jacz"; depends=[dplyr ggplot2 magrittr pheatmap raster Seurat sp SpatialExperiment spdep SummarizedExperiment]; }; - staRank = derive2 { name="staRank"; version="1.44.0"; sha256="1n8mcldi4ng12anksafblpnmafpz3k41gics2m9lr2qjwpcki78l"; depends=[cellHTS2]; }; - stageR = derive2 { name="stageR"; version="1.24.0"; sha256="064hvx8qyw5hdhihwl9k0jqhg6saz4ng2m37d2ipr5pz9v8adspb"; depends=[SummarizedExperiment]; }; - standR = derive2 { name="standR"; version="1.6.0"; sha256="1mmjxbkgdy8wgfplx0yl5m9jn4srfi1p25wl5vv9jz5r1wz32i0k"; depends=[Biobase BiocGenerics dplyr edgeR ggalluvial ggplot2 limma mclustcomp patchwork readr rlang ruv RUVSeq S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment tibble tidyr]; }; - statTarget = derive2 { name="statTarget"; version="1.32.0"; sha256="182pfd6i46h4rggm4pq0rqjfsf0sxap99mgxvf40wa428w55wawg"; depends=[impute pdist pls plyr randomForest ROC rrcov]; }; - stepNorm = derive2 { name="stepNorm"; version="1.74.0"; sha256="04n69wgwwwkvw87ni1hgvwjq9n0dhaibx4pjyz840vlxqd8bmfla"; depends=[marray MASS]; }; - strandCheckR = derive2 { name="strandCheckR"; version="1.20.0"; sha256="0vwwcywlnq1bi0g3illsk2sgx5ad0xifxxvv87i8ms9x0vlg2px2"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges magrittr reshape2 rmarkdown Rsamtools S4Vectors stringr TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - struct = derive2 { name="struct"; version="1.14.1"; sha256="0zppf1dnnd4wa4g37xm2l8yr7rnm4hnakba4qf7ra1y5n71bab30"; depends=[knitr ontologyIndex rols S4Vectors SummarizedExperiment]; }; - structToolbox = derive2 { name="structToolbox"; version="1.14.0"; sha256="1pwnsvyzpshp7mw56ksh2jiwbdh8znb2k375sr1r17gyi0kk3qdr"; depends=[ggplot2 ggthemes gridExtra scales sp struct]; }; - subSeq = derive2 { name="subSeq"; version="1.32.0"; sha256="0y08rxaw79aybvmqszjzb6vrnipbhsc8b1hw7ggxmhkm2d9z1h02"; depends=[Biobase data_table digest dplyr ggplot2 magrittr qvalue tidyr]; }; - supersigs = derive2 { name="supersigs"; version="1.10.0"; sha256="1lx927w6s4f098y0dh69kc2xswfigj89apv4nqi27frqq4my0051"; depends=[assertthat Biostrings caret dplyr rlang rsample SummarizedExperiment tidyr]; }; - supraHex = derive2 { name="supraHex"; version="1.40.0"; sha256="0v7b4hwj8b7byzshqd7drppnk02hv5p6ar3lb9biw8z5d20k4gx4"; depends=[ape dplyr hexbin igraph magrittr MASS purrr readr stringr tibble tidyr]; }; - surfaltr = derive2 { name="surfaltr"; version="1.8.0"; sha256="1k4s8v8fk1abcx672ypx2rjkim7vb8z5p39kp3czxiyzlsz2684s"; depends=[biomaRt Biostrings dplyr ggplot2 httr msa protr readr seqinr stringr testthat xml2]; }; - survcomp = derive2 { name="survcomp"; version="1.52.0"; sha256="18a81vv88xj3frkdy5l6w2fc4xzr1k6vgbz4j4marlmh6mz6skin"; depends=[bootstrap ipred KernSmooth prodlim rmeta SuppDists survival survivalROC]; }; - survtype = derive2 { name="survtype"; version="1.18.0"; sha256="0b441y5s2lflv6n9rz10d6fva49pprnj65dw11d2yv2rqdsv30i6"; depends=[clustvarsel pheatmap SummarizedExperiment survival survminer]; }; - sva = derive2 { name="sva"; version="3.50.0"; sha256="0p4zgw1pi5vnaqxn6jmvhpy0h5hnnqp41n0k2v0chhqgqxgn67x1"; depends=[BiocParallel edgeR genefilter limma matrixStats mgcv]; }; - svaNUMT = derive2 { name="svaNUMT"; version="1.8.0"; sha256="0v8bzzkk2h017zq5riy399d2c28b8g3nq10y5av3594il2if4i1x"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges rlang rtracklayer S4Vectors stringr StructuralVariantAnnotation VariantAnnotation]; }; - svaRetro = derive2 { name="svaRetro"; version="1.8.0"; sha256="1mlji4dqr9m99wfqcm0xh4q42bw7d4lvmyr7irr6qh4z0kx3kyb5"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges rlang rtracklayer S4Vectors stringr StructuralVariantAnnotation VariantAnnotation]; }; - swfdr = derive2 { name="swfdr"; version="1.28.0"; sha256="0xnfl0v6ijzb93yvdba7kpab5igbdxy6whn3lyjil24fmdr6xdg3"; depends=[]; }; - switchBox = derive2 { name="switchBox"; version="1.38.0"; sha256="0dvfrcbim09ahqh2wx455745h6pway72m1yy8wkg07zp6cdr0xm5"; depends=[gplots pROC]; }; - switchde = derive2 { name="switchde"; version="1.28.0"; sha256="0w2k4jx7svc1pz7nrb7kqbm1hbl6ka75y82dljzc7aifdm5y5zvj"; depends=[dplyr ggplot2 SingleCellExperiment SummarizedExperiment]; }; - synapsis = derive2 { name="synapsis"; version="1.8.0"; sha256="1l62y9rkx5yqyjb2bqsymmkyl8wjacfbivz2h91c789rywkah5d8"; depends=[EBImage]; }; - synapter = derive2 { name="synapter"; version="2.26.0"; sha256="0ccz6yasni13yi5qa8whm026v9q7za3714znnnyc3x4xr2sizk83"; depends=[Biobase Biostrings cleaver lattice MSnbase multtest qvalue RColorBrewer readr rmarkdown]; }; - synergyfinder = derive2 { name="synergyfinder"; version="3.10.3"; sha256="1svpwyr0mh1g9mllhfqsyhpyyzymmpsz4ylv50vasxs78lhd14zx"; depends=[dplyr drc furrr future ggforce ggplot2 ggrepel gstat kriging lattice magrittr metR mice nleqslv pbapply plotly purrr reshape2 sp SpatialExtremes stringr tidyr tidyverse vegan]; }; - synlet = derive2 { name="synlet"; version="2.2.0"; sha256="0khbs23xyl02skld6di6s31ppqxnwlid134x1fm8pc932qmd49rf"; depends=[data_table ggplot2 magrittr patchwork RankProd RColorBrewer]; }; - syntenet = derive2 { name="syntenet"; version="1.4.0"; sha256="171g7c6y523rycykpzlj8qhyz1jyh646lqvhxa760qr14zj5cf82"; depends=[BiocParallel Biostrings GenomicRanges ggnetwork ggplot2 igraph intergraph networkD3 pheatmap RColorBrewer Rcpp rlang rtracklayer testthat]; }; - systemPipeR = derive2 { name="systemPipeR"; version="2.8.0"; sha256="01amqib9ahrf19xpy4ivlsss82zyp3w7fbgwrwp53zfbg0cninga"; depends=[BiocGenerics Biostrings crayon GenomicRanges ggplot2 htmlwidgets magrittr Rsamtools S4Vectors ShortRead stringr SummarizedExperiment yaml]; }; - systemPipeShiny = derive2 { name="systemPipeShiny"; version="1.12.0"; sha256="0r5fk657q3zgmjx8kdblypfwqmsdbgbn919zi74dkkgma9ls2c7c"; depends=[assertthat bsplus crayon dplyr drawer DT ggplot2 glue htmltools magrittr openssl plotly R6 rlang RSQLite rstudioapi shiny shinyAce shinydashboard shinydashboardPlus shinyFiles shinyjqui shinyjs shinytoastr shinyWidgets spsComps spsUtil stringr styler tibble vroom yaml]; }; - systemPipeTools = derive2 { name="systemPipeTools"; version="1.10.0"; sha256="1fs5s5mqmsb7pra2znbkhp4jfkcds1zzipfi39fl4dsh24iinwrd"; depends=[ape DESeq2 dplyr DT GGally ggplot2 ggrepel ggtree glmpca magrittr pheatmap plotly Rtsne SummarizedExperiment tibble]; }; - tLOH = derive2 { name="tLOH"; version="1.10.0"; sha256="0yzbpy30hvpxdh1lsnab5jp2nj64ii4pmir8xq3bp871hpqiwmwd"; depends=[bestNormalize data_table depmixS4 dplyr GenomicRanges ggplot2 MatrixGenerics naniar purrr scales stringr VariantAnnotation]; }; - tRNA = derive2 { name="tRNA"; version="1.20.1"; sha256="0mcpql3zf1gw2k6gfyqycycc8li00818gd9qzs8s3wva7kxbpn89"; depends=[BiocGenerics Biostrings GenomicRanges ggplot2 IRanges Modstrings S4Vectors scales stringr Structstrings XVector]; }; - tRNAdbImport = derive2 { name="tRNAdbImport"; version="1.20.1"; sha256="1i2mismx914ijys13wwz50gkk682rklp36aci270nc7vx78hynni"; depends=[Biostrings GenomicRanges httr2 IRanges Modstrings S4Vectors stringr Structstrings tRNA xml2]; }; - tRNAscanImport = derive2 { name="tRNAscanImport"; version="1.22.0"; sha256="18yp63mrgz497qcvf0cjgj22b75xmfb2f61jw2cd312c344iikzn"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors stringr Structstrings tRNA XVector]; }; - tRanslatome = derive2 { name="tRanslatome"; version="1.40.0"; sha256="08fdamgafp2cjp6sp6lpknyfl243sp32xqmgbazm0x3qxf4fr9k0"; depends=[anota Biobase DESeq2 edgeR GOSemSim gplots Heatplus limma org_Hs_eg_db plotrix RankProd topGO]; }; - tadar = derive2 { name="tadar"; version="1.0.0"; sha256="1v39gw3i202lzq7cjvm5rb043b3zyyrz48ikm6dawv6vv1p2kjp5"; depends=[BiocGenerics GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges MatrixGenerics rlang Rsamtools S4Vectors VariantAnnotation]; }; - tanggle = derive2 { name="tanggle"; version="1.8.0"; sha256="0gf5y5nwhmpxzl8yynp4352i969wgllj2xb9khc401qciznfmh0h"; depends=[ape ggplot2 ggtree phangorn]; }; - target = derive2 { name="target"; version="1.16.0"; sha256="0jqa7wdxqyppindfzx0s9zybmmcbxgy5s7wf36hx87vy8ja5h4zf"; depends=[BiocGenerics GenomicRanges IRanges matrixStats shiny]; }; - tenXplore = derive2 { name="tenXplore"; version="1.24.0"; sha256="1sk8xxvrmxkqlz7hq6w10hsjf1x8g06gbaas75hx4m0f1hz6pdwm"; depends=[AnnotationDbi matrixStats ontoProc org_Mm_eg_db restfulSE shiny SummarizedExperiment]; }; - ternarynet = derive2 { name="ternarynet"; version="1.46.0"; sha256="1y3fwxqniy1w61hjq20rmms1pl4341nh3lv8vr9g8y63lcf2nn0q"; depends=[BiocParallel igraph]; }; - terraTCGAdata = derive2 { name="terraTCGAdata"; version="1.6.0"; sha256="0capn1a7cdmrr9mbfhglxyr8jn8m5ai07bgsmi54hz01vkspba8f"; depends=[AnVIL BiocFileCache dplyr GenomicRanges MultiAssayExperiment RaggedExperiment readr S4Vectors TCGAutils tidyr]; }; - tidySingleCellExperiment = derive2 { name="tidySingleCellExperiment"; version="1.12.0"; sha256="08vz3198cl0d8wh5hz4vkf47jsyvwczmnw5g8zawpkylmawr0xrp"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr Matrix pillar pkgconfig plotly purrr rlang S4Vectors SingleCellExperiment stringr SummarizedExperiment tibble tidyr tidyselect ttservice vctrs]; }; - tidySummarizedExperiment = derive2 { name="tidySummarizedExperiment"; version="1.12.0"; sha256="0vrs235vggsvmjmyys8h2n3714q0hnzi3qzp3rcnk3pfsj3mhi4f"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr pillar pkgconfig plotly purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect ttservice vctrs]; }; - tidybulk = derive2 { name="tidybulk"; version="1.14.3"; sha256="0dpcx6vx70iwrxvy5bcggqvnswsmc96b9n0da715wcinibw7i4yj"; depends=[crayon dplyr GenomicRanges lifecycle magrittr Matrix preprocessCore purrr readr rlang S4Vectors scales stringi stringr SummarizedExperiment tibble tidyr tidyselect ttservice]; }; - tigre = derive2 { name="tigre"; version="1.56.0"; sha256="1wn6fpkqzy29n1ghpk59cd63wdrz3imxmnkrmdv1j1hw7iljq8ax"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; }; - tilingArray = derive2 { name="tilingArray"; version="1.80.0"; sha256="01j4wj0mdfrlyhp2alf1xfy78f17x43w9i0wb41ljw6pm313np58"; depends=[affy Biobase genefilter pixmap RColorBrewer strucchange vsn]; }; - timeOmics = derive2 { name="timeOmics"; version="1.14.0"; sha256="11x8m0vr6sbnpxnxn352cjkidxxv1pq7d8zdp59gcydrqdgsq665"; depends=[dplyr ggplot2 ggrepel lmtest magrittr mixOmics plyr purrr stringr tibble tidyr]; }; - timecourse = derive2 { name="timecourse"; version="1.74.0"; sha256="0lfsw6migjxswxiv05ry6dr2by9i6z285y16h2r1dm2qc287vxbi"; depends=[Biobase limma marray MASS]; }; - timescape = derive2 { name="timescape"; version="1.26.0"; sha256="1yb3nbx0d206gwkrifqhxdnij6qxlgj5dmk1f2zgqlqkp2fhw45y"; depends=[dplyr gtools htmlwidgets jsonlite stringr]; }; - tkWidgets = derive2 { name="tkWidgets"; version="1.80.0"; sha256="11a8rflmga2d63l5nzdlbkyfnzsf20dzg2sy6qr143hg9sjzqrrj"; depends=[DynDoc widgetTools]; }; - tomoda = derive2 { name="tomoda"; version="1.12.0"; sha256="0lmibcsqasga6j6dwrq415yvrx1jqg88ayvrr4bca4pdshkkds6s"; depends=[ggplot2 ggrepel RColorBrewer reshape2 Rtsne SummarizedExperiment umap]; }; - tomoseqr = derive2 { name="tomoseqr"; version="1.6.0"; sha256="07ywzz2bkm408kv1c9hwfaww7vr63090jbcbi8x6k4z3c4jllmvw"; depends=[animation BiocFileCache dplyr ggplot2 plotly purrr readr shiny stringr tibble]; }; - topGO = derive2 { name="topGO"; version="2.54.0"; sha256="1sznyx11kzw8d8zg5ynl9sp6m0daf2yw3f2b24maxbpr1xkif9nx"; depends=[AnnotationDbi Biobase BiocGenerics DBI GO_db graph lattice matrixStats SparseM]; }; - topconfects = derive2 { name="topconfects"; version="1.18.0"; sha256="03fr9ghdmaqsriwrim6fbvq09dknsrq3dbfswqrwkfi785ddmmfk"; depends=[assertthat ggplot2]; }; - topdownr = derive2 { name="topdownr"; version="1.24.0"; sha256="01m9j4bbii35r8kzf4zi3xcma5g1cv87gcmmpc7cl2hp38gwpa4y"; depends=[Biobase BiocGenerics Biostrings ggplot2 Matrix MSnbase mzR ProtGenerics S4Vectors]; }; - trackViewer = derive2 { name="trackViewer"; version="1.38.2"; sha256="1zgxp76ykgn4wk6nnpafjpswcky23jpghzzs68z0hhlzv4cc40s6"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph grImport Gviz htmlwidgets InteractionSet IRanges plotrix Rgraphviz rhdf5 Rsamtools rtracklayer S4Vectors scales strawr]; }; - tracktables = derive2 { name="tracktables"; version="1.36.0"; sha256="0ia4jqdapllgf51i4gjyjkmk6i6yrqx8np28hj1k0lr07j3k1hq4"; depends=[GenomicRanges IRanges RColorBrewer Rsamtools stringr tractor_base XML XVector]; }; - tradeSeq = derive2 { name="tradeSeq"; version="1.16.0"; sha256="06k0jib20nq7zqc5vbgag8v1lbadjlg0idh5jwn5bcjc74dx15vj"; depends=[Biobase BiocParallel edgeR ggplot2 igraph magrittr MASS Matrix matrixStats mgcv pbapply princurve RColorBrewer S4Vectors SingleCellExperiment slingshot SummarizedExperiment tibble TrajectoryUtils viridis]; }; - transcriptR = derive2 { name="transcriptR"; version="1.30.0"; sha256="1lbla2syljpmgdf7da7vl1260fy54xs3hk6m2gjpark0dka0kqbh"; depends=[BiocGenerics caret chipseq e1071 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges pROC reshape2 Rsamtools rtracklayer S4Vectors]; }; - transcriptogramer = derive2 { name="transcriptogramer"; version="1.24.0"; sha256="17jy1cxn1i2grbrd9l95y9rmm2k67xazgr77i7vyjxwc3dki61sl"; depends=[biomaRt data_table doSNOW foreach ggplot2 igraph limma progress RedeR snow tidyr topGO]; }; - transformGamPoi = derive2 { name="transformGamPoi"; version="1.8.0"; sha256="0xa7hysk0ssjxhwhsz97487k3xxnzaz83d7bpq3nb0jvglqzja1x"; depends=[DelayedArray glmGamPoi HDF5Array Matrix MatrixGenerics Rcpp SummarizedExperiment]; }; - transite = derive2 { name="transite"; version="1.20.1"; sha256="089n19vwwi8cvsqcxd5dl5lqjs2sgnglg36a5wd87qbgmvk540sm"; depends=[BiocGenerics Biostrings dplyr GenomicRanges ggplot2 gridExtra Rcpp scales TFMPvalue]; }; - transomics2cytoscape = derive2 { name="transomics2cytoscape"; version="1.12.0"; sha256="0scib9ai6x7854cnwxn8imiycigsmin9q2hfvy26vdy72svv7q17"; depends=[dplyr KEGGREST pbapply purrr RCy3 tibble]; }; - traseR = derive2 { name="traseR"; version="1.32.0"; sha256="05xi01cgz8vahn37rwx9ngxglxyhdk2ckkbdchd6g1if15pzm91q"; depends=[BSgenome_Hsapiens_UCSC_hg19 GenomicRanges IRanges]; }; - traviz = derive2 { name="traviz"; version="1.8.0"; sha256="0yf0as3400wxgvbw7i5wmj3iqzv7racs6xsaydalgdpax2na70k6"; depends=[Biobase ggplot2 mgcv princurve RColorBrewer rgl SingleCellExperiment slingshot SummarizedExperiment viridis]; }; - treeio = derive2 { name="treeio"; version="1.26.0"; sha256="1kvzdryw74r74gwxddsrng81ww49p3s7hgxn8ggl0p8fvz3sfgir"; depends=[ape dplyr jsonlite magrittr rlang tibble tidytree]; }; - treekoR = derive2 { name="treekoR"; version="1.10.0"; sha256="059ars8rppa2pmykf4d1lhazbb9fdb4xjxrnsyihjfca8cc2i0n8"; depends=[ape data_table diffcyt dplyr edgeR ggiraph ggplot2 ggtree hopach lme4 multcomp patchwork SingleCellExperiment tidyr]; }; - tricycle = derive2 { name="tricycle"; version="1.10.0"; sha256="1dawkp681pz9hf7fp2nag9pcfxx5rq0z4j9czlalf0sylsjbirkd"; depends=[AnnotationDbi circular dplyr GenomicRanges ggnewscale ggplot2 IRanges RColorBrewer S4Vectors scater scattermore SingleCellExperiment SummarizedExperiment]; }; - trigger = derive2 { name="trigger"; version="1.48.0"; sha256="0bwjsp7mksr7xw3dchq6n4d359x3jwb94y97f9cnap4x4v0jrx6i"; depends=[corpcor qtl qvalue sva]; }; - trio = derive2 { name="trio"; version="3.40.0"; sha256="0hh3fk7jsgdi5v9gwc8f3lcp6snc1d9yxalf20zyhcilyn19vdhv"; depends=[LogicReg siggenes survival]; }; - triplex = derive2 { name="triplex"; version="1.42.0"; sha256="1rgws9fw0zhq55qjj1jhiy93anj21xxc45lqkjy2p5m65i3300zh"; depends=[Biostrings GenomicRanges IRanges S4Vectors XVector]; }; - tripr = derive2 { name="tripr"; version="1.8.0"; sha256="08f7xmhwx6s79lw5pb0manj6y5hxr6dvaczvacfmvvwf3l7p09pn"; depends=[config data_table dplyr DT golem gridExtra plot3D plotly plyr RColorBrewer shiny shinyBS shinyFiles shinyjs stringdist stringr]; }; - ttgsea = derive2 { name="ttgsea"; version="1.10.0"; sha256="00yk10hkfajd01s33al0kdc402n35axkywjpcp72zsrhx7j0xviw"; depends=[data_table DiagrammeR keras purrr stopwords text2vec textstem tm tokenizers]; }; - tweeDEseq = derive2 { name="tweeDEseq"; version="1.48.0"; sha256="0mg6kfnvxlpjibm0ghjqycggs6vsr60pg8vwrjvdk14p9c807cdp"; depends=[cqn edgeR limma MASS Rcpp]; }; - twilight = derive2 { name="twilight"; version="1.78.0"; sha256="00ggr8z7swscrlqasny041jxczkwx6qskazwbc50v1f4n0m81hvh"; depends=[Biobase]; }; - twoddpcr = derive2 { name="twoddpcr"; version="1.26.0"; sha256="1yjqmljfc6p11h68z7lmm4b43rwc992n4iyj10vyyjdfqrajll0s"; depends=[class ggplot2 hexbin RColorBrewer S4Vectors scales shiny]; }; - txcutr = derive2 { name="txcutr"; version="1.8.0"; sha256="0xq71y0rds16mkcnf7vdxq4qvx3n4h59237s3j9g6s8sj7iykxgj"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors]; }; - tximeta = derive2 { name="tximeta"; version="1.20.3"; sha256="0hlx5kvhspc62p68gz53n0scwji3zvfv915fm8rzw3l8h2hjh3y7"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings ensembldb GenomeInfoDb GenomicFeatures GenomicRanges IRanges jsonlite Matrix S4Vectors SummarizedExperiment tibble tximport]; }; - tximport = derive2 { name="tximport"; version="1.30.0"; sha256="0m6avd815xcv3py5sym083pdccvd4crdyyc7sfpxccnksgchyrf2"; depends=[]; }; - uSORT = derive2 { name="uSORT"; version="1.28.0"; sha256="09dk90lhxyfpv1jz589q5zi84jldpvnibsi0ijnmv3l0998jmfxa"; depends=[Biobase BiocGenerics cluster fpc gplots igraph Matrix monocle plyr RANN RSpectra VGAM]; }; - uncoverappLib = derive2 { name="uncoverappLib"; version="1.12.0"; sha256="02c2fc89l8shbs8b9lqnzn9k413rbcff8lp7in2770ayw8lsnwaf"; depends=[BiocFileCache condformat DT EnsDb_Hsapiens_v75 EnsDb_Hsapiens_v86 GenomicRanges Gviz Homo_sapiens markdown openxlsx org_Hs_eg_db OrganismDbi processx rappdirs rlist Rsamtools S4Vectors shiny shinyBS shinycssloaders shinyjs shinyWidgets stringr TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - unifiedWMWqPCR = derive2 { name="unifiedWMWqPCR"; version="1.38.0"; sha256="0v3jpnm3nq66xvckmc8447xl7wngfhhiwq6vjx54wgc6f586vmgd"; depends=[BiocGenerics HTqPCR]; }; - universalmotif = derive2 { name="universalmotif"; version="1.20.0"; sha256="0wy7zplypjiqv4wjq0l30xb5xj63fxb7z2wmmfrmzfkbgbm0xyha"; depends=[BiocGenerics Biostrings ggplot2 IRanges MASS MatrixGenerics Rcpp RcppThread rlang S4Vectors yaml]; }; - updateObject = derive2 { name="updateObject"; version="1.6.0"; sha256="0a1br8ifjkp3qxirs9skih194q9ghh1g3kifm4imah7nh138dwxa"; depends=[BiocGenerics digest S4Vectors]; }; - variancePartition = derive2 { name="variancePartition"; version="1.32.5"; sha256="1yrss51gwg73rlva0xhk34md0cx43h2j4vfk0z2hzchr2r1amzmc"; depends=[aod Biobase BiocParallel corpcor fANCOVA ggplot2 gplots iterators limma lme4 lmerTest MASS Matrix matrixStats pbkrtest Rdpack remaCor reshape2 RhpcBLASctl rlang scales]; }; - vbmp = derive2 { name="vbmp"; version="1.70.0"; sha256="1i2fz0mp5pab7pwibmghnl95cha3p29a6pzn3yj5izxv5rc4n5hb"; depends=[]; }; - velociraptor = derive2 { name="velociraptor"; version="1.12.0"; sha256="0z40mgmqcx4rg3s1gi3gnhnlh65l133ikw2nawhyrcjy4d34gpq1"; depends=[basilisk BiocGenerics BiocParallel BiocSingular DelayedArray Matrix reticulate S4Vectors scuttle SingleCellExperiment SummarizedExperiment zellkonverter]; }; - veloviz = derive2 { name="veloviz"; version="1.8.0"; sha256="11wrj0czqcapi38f8sm1f2s1xfnbjqf4js7ridk1j106kzi2cvsz"; depends=[igraph Matrix mgcv Rcpp RSpectra]; }; - vidger = derive2 { name="vidger"; version="1.22.0"; sha256="1ldl67jcgqjkla47f5n405jb0avy1hba6kzx3kj0cfs3fnvcdks6"; depends=[Biobase DESeq2 edgeR GGally ggplot2 ggrepel knitr RColorBrewer rmarkdown scales SummarizedExperiment tidyr]; }; - viper = derive2 { name="viper"; version="1.36.0"; sha256="088jgnsn4bi72zpywzbyz5l5r6xj3kjh2b847lx6v4dc10n0v0sp"; depends=[Biobase e1071 KernSmooth mixtools]; }; - vissE = derive2 { name="vissE"; version="1.10.0"; sha256="1gzhw3w70ri5hg8dy3q5vh4zsladqab1hbrx4zx7kvw80yhqf7h4"; depends=[ggforce ggplot2 ggraph ggrepel ggwordcloud GSEABase igraph msigdb plyr RColorBrewer reshape2 scales scico textstem tidygraph tm]; }; - vsclust = derive2 { name="vsclust"; version="1.4.0"; sha256="13blx78akk55jq6xmg9qqb9qbyrhgnqbn8a762lrhw720wj9jf1l"; depends=[limma matrixStats MultiAssayExperiment qvalue Rcpp shiny]; }; - vsn = derive2 { name="vsn"; version="3.70.0"; sha256="0li0yxf8m34xpmrgv5vciy8zdsbfdlajl9cmnxr4g4nmarik2bkh"; depends=[affy Biobase ggplot2 lattice limma]; }; - vtpnet = derive2 { name="vtpnet"; version="0.42.0"; sha256="0550vqz3bccab16w7p7i1kjvpf3j1nid6qrd4z4hrfy0lgpj09ag"; depends=[doParallel foreach GenomicRanges graph gwascat]; }; - vulcan = derive2 { name="vulcan"; version="1.24.0"; sha256="0zsc9cm6xxprn4mndz0zzn062lww80ym1avjqn89bsghjig15lmz"; depends=[Biobase caTools ChIPpeakAnno csaw DESeq2 DiffBind GenomicRanges gplots locfit S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene viper wordcloud zoo]; }; - waddR = derive2 { name="waddR"; version="1.16.0"; sha256="07a5px5vixni5zcaqyarlhhqyf6md53k6ll4c6qc6lan2gj28pk7"; depends=[arm BiocFileCache BiocParallel eva Rcpp RcppArmadillo SingleCellExperiment]; }; - wateRmelon = derive2 { name="wateRmelon"; version="2.8.0"; sha256="1ra21qzni9cny52ag9zxi46vb9grabyqjyk01dqqp3r9i0b4999l"; depends=[Biobase IlluminaHumanMethylation450kanno_ilmn12_hg19 illuminaio limma lumi matrixStats methylumi ROC]; }; - wavClusteR = derive2 { name="wavClusteR"; version="2.36.0"; sha256="1y2bk1kla0l72xgdam2l9c0k7584ckdqscqnc184cxvqm6fb335j"; depends=[BiocGenerics Biostrings foreach GenomicFeatures GenomicRanges ggplot2 Hmisc IRanges mclust Rsamtools rtracklayer S4Vectors seqinr stringr]; }; - weaver = derive2 { name="weaver"; version="1.68.0"; sha256="1y3zrycmv8yg0k521v1pgwzrlrwhsq7nbsfq5nakmlnrra6m9hpr"; depends=[codetools digest]; }; - webbioc = derive2 { name="webbioc"; version="1.74.0"; sha256="1ca41q7hxy6p8kvc3qbjplvn40k4jwhf0mb03njifry4xi1xipgy"; depends=[affy annaffy Biobase BiocManager gcrma multtest qvalue vsn]; }; - weitrix = derive2 { name="weitrix"; version="1.14.0"; sha256="0rn3dnz8bg9rkc0ksfpn3hw0jhznqhnih91xgxnnka3zq1hs3bxv"; depends=[assertthat BiocGenerics BiocParallel Ckmeans_1d_dp DelayedArray DelayedMatrixStats dplyr ggplot2 glm2 limma purrr reshape2 RhpcBLASctl rlang S4Vectors scales SummarizedExperiment topconfects]; }; - widgetTools = derive2 { name="widgetTools"; version="1.80.0"; sha256="1zkc275sb1qbban7sghqziv3xkg7wjdpghddklv451n7j282k6w1"; depends=[]; }; - wiggleplotr = derive2 { name="wiggleplotr"; version="1.26.0"; sha256="1gq0hxmnnis0g1y6hiphz02dmk3pfjz874xb2bxqw49z7387fwm8"; depends=[assertthat cowplot dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges purrr rtracklayer S4Vectors]; }; - wpm = derive2 { name="wpm"; version="1.12.0"; sha256="0g9cvxqyvmhd55s58n1940vsx8klkkmphakqz1apylkrlzylgzya"; depends=[Biobase cli config dplyr DT ggplot2 golem logging RColorBrewer rlang shiny shinycustomloader shinydashboard shinyWidgets stringr SummarizedExperiment]; }; - wppi = derive2 { name="wppi"; version="1.10.0"; sha256="04wg645c0gww8mq3vg70gqlwm12dmqxmvk704zvmxcpifhrvpn2b"; depends=[dplyr igraph logger magrittr Matrix OmnipathR progress purrr RCurl rlang tibble tidyr]; }; - xcms = derive2 { name="xcms"; version="4.0.2"; sha256="170s260sp880d3rb256189jvfnnmyzf9nxh8bvksng6yp561r8dc"; depends=[Biobase BiocGenerics BiocParallel IRanges lattice MassSpecWavelet MsCoreUtils MsExperiment MsFeatures MSnbase multtest mzR plyr progress ProtGenerics RANN RColorBrewer robustbase S4Vectors Spectra SummarizedExperiment]; }; - xcore = derive2 { name="xcore"; version="1.6.0"; sha256="0m176rbszbpi2900cf1p574hvi5qmvw9faf08g15wijk9r896qx7"; depends=[DelayedArray edgeR foreach GenomicRanges glmnet IRanges iterators magrittr Matrix MultiAssayExperiment S4Vectors]; }; - xmapbridge = derive2 { name="xmapbridge"; version="1.60.0"; sha256="0pby2h8m12xlngpk33dvh3nkrpgqi4f2mb7g9jafyiv3sl8pjd19"; depends=[]; }; - yamss = derive2 { name="yamss"; version="1.28.0"; sha256="16rdy35wmydcx322pf9j7l7z2mzgrksg1whr8i8xdmdqfnqz3xyb"; depends=[BiocGenerics data_table EBImage IRanges limma Matrix mzR S4Vectors SummarizedExperiment]; }; - yarn = derive2 { name="yarn"; version="1.28.0"; sha256="12d806pyiks5xbvxng4pxn0xqvgs4c526gp2pp2qhdxw0w2m29rj"; depends=[Biobase biomaRt downloader edgeR gplots limma matrixStats preprocessCore quantro RColorBrewer readr]; }; - zFPKM = derive2 { name="zFPKM"; version="1.24.0"; sha256="18pnzc51r7l1ypnhavl83r3gy7l91qnqzvl6771zid04g99pk844"; depends=[checkmate dplyr ggplot2 SummarizedExperiment tidyr]; }; - zellkonverter = derive2 { name="zellkonverter"; version="1.12.1"; sha256="029bqn25c90algvgacxbv0fdznpg879xjwfj5hiydfwq30y0kr8r"; depends=[basilisk cli DelayedArray Matrix reticulate S4Vectors SingleCellExperiment SummarizedExperiment]; }; - zenith = derive2 { name="zenith"; version="1.4.2"; sha256="0wy3v69pp8jhij1svncq86x35xxr2d0gl5mrk7h8w4341sbms4p4"; depends=[EnrichmentBrowser ggplot2 GSEABase limma msigdbr progress Rdpack reshape2 Rfast tidyr variancePartition]; }; - zinbwave = derive2 { name="zinbwave"; version="1.24.0"; sha256="1lp8x9grc07kaz9iy7yc45mk708g9dplsl86fq0ip8rs51c8f31i"; depends=[BiocParallel edgeR genefilter Matrix SingleCellExperiment softImpute SummarizedExperiment]; }; - zlibbioc = derive2 { name="zlibbioc"; version="1.48.2"; sha256="078v1iywzc0ng27r0wjchvkh4znzydq1swlalqb95xkmn72vrq8d"; depends=[]; }; + ABSSeq = derive2 { name="ABSSeq"; version="1.58.0"; sha256="0zqb2w055x4whgl3mljarsnps6lkz90fwlx2lnirbnrgmlnalwjz"; depends=[limma locfit]; }; + ABarray = derive2 { name="ABarray"; version="1.72.0"; sha256="1kfqq4df55pxl7gnwf24aaryxijym4gzqfjyif28arlbjci9hlv6"; depends=[Biobase multtest]; }; + ACE = derive2 { name="ACE"; version="1.22.0"; sha256="1gpn9z09cfcy2mj7m32xfb2bjjwl01g9qn9nqaivmqbi4k6icrr8"; depends=[Biobase GenomicRanges ggplot2 QDNAseq]; }; + ACME = derive2 { name="ACME"; version="2.60.0"; sha256="0jak83dlavhczaa2nqk5g2l0h4grnc9v24bg6v9mjfn6bqhl1s7j"; depends=[Biobase BiocGenerics]; }; + ADAM = derive2 { name="ADAM"; version="1.20.0"; sha256="0z0rmpwfhd8p6c4zscviwsningsm740r3pb95cl8brasfdg1kl3v"; depends=[dplyr DT GO_db KEGGREST knitr pbapply Rcpp stringr SummarizedExperiment]; }; + ADAMgui = derive2 { name="ADAMgui"; version="1.20.0"; sha256="08kxkb6hgbw7l9dv1wn3jfdkc0sizqdgmjkrzpq73q7rf0p4248g"; depends=[ADAM colorRamps data_table dplyr DT ggplot2 ggpubr ggrepel ggsignif GO_db gridExtra knitr RColorBrewer reshape2 shiny shinyjs stringi stringr testthat varhandle]; }; + ADImpute = derive2 { name="ADImpute"; version="1.14.0"; sha256="0kihg0mwm2ysgnx3jg6xln7ibvgmky0x2hjbcmdqlg65znczh4b6"; depends=[BiocParallel checkmate data_table DrImpute kernlab MASS Matrix rsvd S4Vectors SAVER SingleCellExperiment SummarizedExperiment]; }; + ADaCGH2 = derive2 { name="ADaCGH2"; version="2.44.0"; sha256="1j9dn0xw8mdfvi2ccm1d5j9q740wb89wqi6715n6jy3dljlc8irz"; depends=[aCGH bit cluster DNAcopy ff GLAD tilingArray waveslim]; }; + AGDEX = derive2 { name="AGDEX"; version="1.52.0"; sha256="088r2ahqjv61wnzp7by4c5v9aivahmyfkzr7prnkk3ff8zh6pznl"; depends=[Biobase GSEABase]; }; + AHMassBank = derive2 { name="AHMassBank"; version="1.4.0"; sha256="1inlsknrkb5am3aqfp3mk1fd0aaj89wfiq1549k7dqy71ng7rpf9"; depends=[AnnotationHubData]; }; + AIMS = derive2 { name="AIMS"; version="1.36.0"; sha256="0ljdv1gww01yi0h9j9br8kp67k5wizr1dy0091kngjcbn0dxzmla"; depends=[Biobase e1071]; }; + ALDEx2 = derive2 { name="ALDEx2"; version="1.36.0"; sha256="1bqpk93bbyajw2dm54d68f3dkc0jgcny109asfm6kcz7dg7szi3y"; depends=[BiocParallel directlabels GenomicRanges IRanges lattice latticeExtra multtest Rfast S4Vectors SummarizedExperiment zCompositions]; }; + AMARETTO = derive2 { name="AMARETTO"; version="1.20.0"; sha256="0n3w00x1qajkg43ip3l63k2qs0d1x2zv8wv4xj0iqwl6r6cqgxnf"; depends=[BiocFileCache callr circlize ComplexHeatmap curatedTCGAData doParallel dplyr DT foreach ggplot2 glmnet gridExtra httr impute knitr limma Matrix matrixStats MultiAssayExperiment Rcpp readr reshape2 rmarkdown tibble]; }; + AMOUNTAIN = derive2 { name="AMOUNTAIN"; version="1.30.0"; sha256="1y2k1vg31siic6j98700m54sswbj6wr4dvbw2mz3hlm0nmsmpxc1"; depends=[]; }; + ANCOMBC = derive2 { name="ANCOMBC"; version="2.6.0"; sha256="14jdfcv3hghl1z2f7zj2mdqdyblz5sn4l1iwh8bhvih86cpigb58"; depends=[CVXR DescTools doParallel doRNG energy foreach gtools Hmisc lme4 lmerTest MASS Matrix mia multcomp nloptr Rdpack S4Vectors SingleCellExperiment SummarizedExperiment TreeSummarizedExperiment]; }; + ANF = derive2 { name="ANF"; version="1.26.0"; sha256="00s2rlkh5snqmvlz5a21ilmm0ngh4g362y7iayr6f78nh8gwp617"; depends=[Biobase igraph MASS RColorBrewer survival]; }; + APAlyzer = derive2 { name="APAlyzer"; version="1.18.0"; sha256="102zs1rlz58dzvrgidf7cvq4wcmk6sffc9fv4b0xlqk5d6il32w4"; depends=[DESeq2 dplyr GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel HybridMTest repmis Rsamtools Rsubread rtracklayer SummarizedExperiment tidyr VariantAnnotation]; }; + APL = derive2 { name="APL"; version="1.8.0"; sha256="1mkm9aad0qamqs7595mqcbz37qz4ykn0y24wsl3ngj6ifyfxf643"; depends=[ggplot2 ggrepel magrittr Matrix org_Hs_eg_db org_Mm_eg_db plotly reticulate rlang Seurat SingleCellExperiment SummarizedExperiment topGO viridisLite]; }; + ARRmNormalization = derive2 { name="ARRmNormalization"; version="1.44.0"; sha256="0wg799c5pzw9g0dbkaa5j4jyccvixqbc8x3xnwk3cgi1dsbhpk34"; depends=[ARRmData]; }; + ASAFE = derive2 { name="ASAFE"; version="1.30.0"; sha256="13qf4jvf0m6i46bwqxdhd4zllac370ckwnd9xh6p56r1lrgcl4sa"; depends=[]; }; + ASEB = derive2 { name="ASEB"; version="1.48.0"; sha256="1h5rgy2n7rxd72ypzwnfclw8h5hvdnac48fgbfll669z2k97dsmm"; depends=[]; }; + ASGSCA = derive2 { name="ASGSCA"; version="1.38.0"; sha256="0gvpb1pspm7zlllg77fbi3g6csa3cpp2lbljna2m0xfi0c5zdqvw"; depends=[MASS Matrix]; }; + ASICS = derive2 { name="ASICS"; version="2.20.1"; sha256="0halznbl3bflnn38rh9h5a5f0dsc88n6x6kwdffbpnin9i192q1k"; depends=[BiocParallel ggplot2 glmnet gridExtra Matrix mvtnorm PepsNMR plyr quadprog ropls SummarizedExperiment zoo]; }; + ASSET = derive2 { name="ASSET"; version="2.22.0"; sha256="1wqsnp7w3ml7azrx72fafcfbmjg4324jaxcijpcrlrrccxl5rwp4"; depends=[MASS msm rmeta]; }; + ASSIGN = derive2 { name="ASSIGN"; version="1.40.0"; sha256="1aq302awy940jrc1hnsf0rn05y4fg5m9aljsl1mclxxig6b8mrd2"; depends=[ggplot2 gplots msm Rlab sva yaml]; }; + ASURAT = derive2 { name="ASURAT"; version="1.8.0"; sha256="1fjzmvc4if1kqhwzhd38l5ryvk2qg3001jwapbnkfagxkhmnwymg"; depends=[circlize cluster ComplexHeatmap plot3D Rcpp S4Vectors SingleCellExperiment SummarizedExperiment]; }; + ASpli = derive2 { name="ASpli"; version="2.14.0"; sha256="1br4apbc3zn06ilg8fjb8xcxaimz4h7rnx9i60ak4wnpvgzgbyh2"; depends=[AnnotationDbi BiocGenerics BiocStyle data_table DT edgeR GenomicAlignments GenomicFeatures GenomicRanges Gviz htmltools igraph IRanges limma MASS pbmcapply Rsamtools S4Vectors tidyr txdbmaker UpSetR]; }; + ATACCoGAPS = derive2 { name="ATACCoGAPS"; version="1.6.0"; sha256="09h32q9y7z65ck33rwqzw2wkl8l6016s0sdkhf2g094yxhkz26rh"; depends=[BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm10 chromVAR CoGAPS dplyr fgsea GeneOverlap GenomicFeatures GenomicRanges gplots gtools Homo_sapiens IRanges JASPAR2016 motifmatchr msigdbr Mus_musculus projectR rGREAT stringr TFBSTools tidyverse]; }; + ATACseqQC = derive2 { name="ATACseqQC"; version="1.28.0"; sha256="0licdpzhh6xlma0hnvs4rr4bjr5q4q3g18kipf0is47zj4l91smy"; depends=[BiocGenerics BiocParallel Biostrings BSgenome ChIPpeakAnno edgeR GenomeInfoDb GenomicAlignments GenomicRanges GenomicScores IRanges KernSmooth limma motifStack preseqR randomForest Rsamtools rtracklayer S4Vectors]; }; + ATACseqTFEA = derive2 { name="ATACseqTFEA"; version="1.6.0"; sha256="1dfw6vb0fx02xx21msvy8iarwmn41p1l3ryx1zs39668bz6zz06j"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 ggrepel IRanges limma Matrix motifmatchr pracma Rsamtools rtracklayer S4Vectors SummarizedExperiment TFBSTools]; }; + AUCell = derive2 { name="AUCell"; version="1.26.0"; sha256="009ha82393giapvmfw2mi8pmi88f61mr69qj64y5vphcr1smvcl0"; depends=[BiocGenerics data_table DelayedArray DelayedMatrixStats GSEABase Matrix mixtools R_utils SummarizedExperiment]; }; + AWFisher = derive2 { name="AWFisher"; version="1.18.0"; sha256="0z5qs337zqqri2g3m69m85xg4x5sxnqlkbwz83vhnqfzmy9nqym0"; depends=[edgeR limma]; }; + AffiXcan = derive2 { name="AffiXcan"; version="1.22.0"; sha256="1241vpqkv4p3yarr6fsz1a7awvc4ff7q75ia3ra7vgkvg7gx9p93"; depends=[BiocParallel crayon MultiAssayExperiment SummarizedExperiment]; }; + AffyRNADegradation = derive2 { name="AffyRNADegradation"; version="1.50.0"; sha256="19lcs76jsdy5dz57rkdb8qqankpasrw2r5z4cy98q94az6582ix4"; depends=[affy]; }; + AgiMicroRna = derive2 { name="AgiMicroRna"; version="2.54.0"; sha256="1bm8rxfdgd0fx48fi70by08qr855jv6r4xcr7al2v9akv6vphws2"; depends=[affy affycoretools Biobase limma preprocessCore]; }; + AllelicImbalance = derive2 { name="AllelicImbalance"; version="1.42.0"; sha256="0mbmw450gdlr46ggvhrgimkbir3lg5dnqsfadn7yyrn7wkcr302f"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridExtra Gviz IRanges lattice latticeExtra nlme Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; }; + AlphaBeta = derive2 { name="AlphaBeta"; version="1.18.0"; sha256="192jyfw2676x8pgcp9h4d78283p7n6gnsdw7wzphfjn12v266fb5"; depends=[BiocParallel data_table dplyr expm ggplot2 gtools igraph optimx plotly stringr]; }; + AlphaMissenseR = derive2 { name="AlphaMissenseR"; version="1.0.2"; sha256="1y8dzcrjqmqagnl4jiwcsfkj28n544j2d6li0ga6rrqmjwrnxzv0"; depends=[BiocBaseUtils BiocFileCache curl DBI dplyr duckdb memoise rjsoncons rlang spdl whisker]; }; + AlpsNMR = derive2 { name="AlpsNMR"; version="4.6.0"; sha256="1c8ynw9424ygc4wj4drbm9gdkdqwgb5z7p72zk3x5zh3zqai0d1d"; depends=[baseline BiocParallel cli dplyr fs future generics ggplot2 glue htmltools magrittr matrixStats mixOmics pcaPP purrr readxl reshape2 rlang rmarkdown scales signal speaq stringr tibble tidyr tidyselect vctrs]; }; + AnVIL = derive2 { name="AnVIL"; version="1.16.0"; sha256="0859gsgvljl2adjz4md52z4k1bcqh24i5xdfqddflw4gaq1zlm69"; depends=[BiocBaseUtils BiocManager dplyr DT futile_logger htmltools httr jsonlite miniUI rapiclient rlang shiny tibble tidyr tidyselect yaml]; }; + AnVILBilling = derive2 { name="AnVILBilling"; version="1.14.0"; sha256="0z05zp70l7r1wxf1s825gsgaj6kzj4fgw3962gp0z90whz398jyf"; depends=[bigrquery DBI dplyr DT ggplot2 lubridate magrittr plotly shiny shinytoastr]; }; + AnVILPublish = derive2 { name="AnVILPublish"; version="1.14.0"; sha256="030bm9hxqzgfp94h64wfizcbp4q8b9h2irk4zv679v0wnbspp3zz"; depends=[AnVIL BiocBaseUtils BiocManager httr jsonlite readr rmarkdown whisker yaml]; }; + AnVILWorkflow = derive2 { name="AnVILWorkflow"; version="1.4.0"; sha256="0qk20pg45z2fk7c3ickyzpv99w48pa3r2lfp1aqvh2blbdvp6z88"; depends=[AnVIL dplyr httr jsonlite tibble]; }; + Anaquin = derive2 { name="Anaquin"; version="2.28.0"; sha256="0hfvwzkfy6bm2ffghax5b228k2l6wf8zq82q13h6bxfps4wz0jgb"; depends=[DESeq2 ggplot2 knitr locfit plyr qvalue ROCR]; }; + AneuFinder = derive2 { name="AneuFinder"; version="1.32.0"; sha256="0dgmg0slyrh025wgz299dzzmpirlmdhmabxspci1qfarakw5yicf"; depends=[AneuFinderData bamsignals BiocGenerics Biostrings cowplot DNAcopy doParallel ecp foreach GenomeInfoDb GenomicAlignments GenomicRanges ggdendro ggplot2 ggrepel IRanges mclust reshape2 Rsamtools S4Vectors]; }; + AnnotationDbi = derive2 { name="AnnotationDbi"; version="1.66.0"; sha256="1g2yzbx7djkk8kccbclxv953iijmjvsjsalfv1ihmmcai33979rs"; depends=[Biobase BiocGenerics DBI IRanges KEGGREST RSQLite S4Vectors]; }; + AnnotationFilter = derive2 { name="AnnotationFilter"; version="1.28.0"; sha256="1sdm85sl4d9mqbjgjh3yizcmrzgz0g4x17s25gss2f6cjwy5jp40"; depends=[GenomicRanges lazyeval]; }; + AnnotationForge = derive2 { name="AnnotationForge"; version="1.46.0"; sha256="1ikri9hb1s0jzw1wyfpwsl02hg8dw2xs703sp085sbsq3cwk9cn1"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl RSQLite S4Vectors XML]; }; + AnnotationHub = derive2 { name="AnnotationHub"; version="3.12.0"; sha256="1da2n13j2xysnd175zi7s6zm8yllnp0k59vygkx9id85jcldqf51"; depends=[AnnotationDbi BiocFileCache BiocGenerics BiocManager BiocVersion curl dplyr httr rappdirs RSQLite S4Vectors yaml]; }; + AnnotationHubData = derive2 { name="AnnotationHubData"; version="1.34.0"; sha256="0wcbghjvgr8sx1qg9kyjxb7znkxhihy7jvzycrv4pyq746154xbi"; depends=[AnnotationDbi AnnotationForge AnnotationHub Biobase BiocCheck BiocGenerics BiocManager biocViews Biostrings DBI futile_logger GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges jsonlite OrganismDbi RCurl Rsamtools RSQLite rtracklayer S4Vectors XML]; }; + ArrayExpress = derive2 { name="ArrayExpress"; version="1.64.0"; sha256="1ad6h0pi04r9m3nwxrn7sha837m95kwii8z6s7j4zbka9ijy2pr4"; depends=[Biobase httr jsonlite limma oligo rlang]; }; + AssessORF = derive2 { name="AssessORF"; version="1.22.0"; sha256="1gzaafsfqzy2x35i251gvkd1syif80qb08kkvgnf1i6c8d2czmps"; depends=[Biostrings DECIPHER GenomicRanges IRanges]; }; + BADER = derive2 { name="BADER"; version="1.42.0"; sha256="15lsvfmp4qsrv12bcrz5q8yz8xyg9rckrcflr3k6si03z2vw812p"; depends=[]; }; + BAGS = derive2 { name="BAGS"; version="2.44.0"; sha256="1xc7gp5fljqz26lj8sjcilm01g636p4wlzy4pzy5wgqxgfcw3zps"; depends=[Biobase breastCancerVDX]; }; + BANDITS = derive2 { name="BANDITS"; version="1.20.0"; sha256="1iizs0bvs7rbkwv3vs6xk26jy222kql80fp6cki0qs9h9igpzk5h"; depends=[BiocParallel data_table doParallel doRNG DRIMSeq foreach ggplot2 MASS R_utils Rcpp RcppArmadillo]; }; + BASiCS = derive2 { name="BASiCS"; version="2.16.0"; sha256="0rcc8na0nravf2687bcvbaklwa0z8b43lvdy0nf9xvfrfpr1zjnw"; depends=[assertthat Biobase BiocGenerics BiocParallel coda cowplot ggExtra ggplot2 hexbin MASS Matrix matrixStats posterior Rcpp RcppArmadillo reshape2 S4Vectors scran scuttle SingleCellExperiment SummarizedExperiment viridis]; }; + BASiCStan = derive2 { name="BASiCStan"; version="1.6.0"; sha256="1q6lhmdy19v30aq9hzphxicq6blyzr6z94wcqsqzwb0xjij1z5f9"; depends=[BASiCS BH glmGamPoi Rcpp RcppEigen RcppParallel rstan rstantools scran scuttle SingleCellExperiment StanHeaders SummarizedExperiment]; }; + BBCAnalyzer = derive2 { name="BBCAnalyzer"; version="1.34.0"; sha256="16zm6fix5f5277dkdaxyxl1q1n52960ma3vw8001a5bjxhic58rn"; depends=[Biostrings GenomicRanges IRanges Rsamtools SummarizedExperiment VariantAnnotation]; }; + BCRANK = derive2 { name="BCRANK"; version="1.66.0"; sha256="0ydajrbggvqakdf01pq5mqi1v3slz00irpbx4s9fmxvci9ganwp7"; depends=[Biostrings]; }; + BEARscc = derive2 { name="BEARscc"; version="1.24.0"; sha256="0f66pbhf4fz66021k7f6rlwzxdikznbhjqqpxwrj07yg65q5sd1l"; depends=[data_table ggplot2 SingleCellExperiment]; }; + BEAT = derive2 { name="BEAT"; version="1.42.0"; sha256="0s63nwf21ai1gys0dzjsjqy64sal7dpp040f0jqskyf2y6gdf9v9"; depends=[Biostrings BSgenome GenomicRanges ShortRead]; }; + BERT = derive2 { name="BERT"; version="1.0.0"; sha256="1n2v8sdvh40sqz8gpzszwhp2w6npxnl48bsp9l0bzz8w148cwyk8"; depends=[BiocParallel cluster comprehenr foreach invgamma iterators janitor limma logging SummarizedExperiment sva]; }; + BEclear = derive2 { name="BEclear"; version="2.20.0"; sha256="17i93h0q1fwl8wymmlgjsh8hbnaws6baf4jid5k579aap32zb5ha"; depends=[abind BiocParallel data_table dixonTest futile_logger ids Matrix Rcpp Rdpack]; }; + BG2 = derive2 { name="BG2"; version="1.4.0"; sha256="0nby9b7kha4bz2x7a8b9nk78qai98m76csndnaikcpg79mpzygv5"; depends=[caret GA MASS Matrix memoise]; }; + BHC = derive2 { name="BHC"; version="1.56.0"; sha256="1fam1k42dwd0gh7dw2gz4yl6bnbkfrw0bd44v8sdpvwwyd1dq1r8"; depends=[]; }; + BLMA = derive2 { name="BLMA"; version="1.28.0"; sha256="1b6hcjy6dv55cpprm8ylz7akl4vyvi6lky0qc31q6skxxdp3266k"; depends=[Biobase graph GSA limma metafor PADOG ROntoTools]; }; + BOBaFIT = derive2 { name="BOBaFIT"; version="1.8.0"; sha256="18xzy91rblcdc4x8c4cxi5b03cskdwjpryzajhzycdpdb4hfg89q"; depends=[dplyr GenomicRanges ggbio ggforce ggplot2 magrittr NbClust plyranges stringr tidyr]; }; + BPRMeth = derive2 { name="BPRMeth"; version="1.30.0"; sha256="0ax88n7i72lhlrrq4zc6ay5mg9ds37qlg10xafgkilgliz309ykn"; depends=[assertthat BiocStyle cowplot data_table doParallel e1071 earth foreach GenomicRanges ggplot2 IRanges kernlab magrittr MASS matrixcalc mvtnorm randomForest Rcpp RcppArmadillo S4Vectors truncnorm]; }; + BRAIN = derive2 { name="BRAIN"; version="1.50.0"; sha256="0l712ilc308amafhbl9g6g6jvn1px0x0wlc53y2ql397l9bivva3"; depends=[Biostrings lattice PolynomF]; }; + BREW3R_r = derive2 { name="BREW3R.r"; version="1.0.1"; sha256="0i0r5sryvq721dlffs9d092776jx0j7r9mfiyi24glgqalmrslag"; depends=[GenomicRanges rlang S4Vectors]; }; + BSgenome = derive2 { name="BSgenome"; version="1.72.0"; sha256="1pjbkakrycvaifl7xrmri2h94zc1ap8a9d1q4c83qji3xa21cm4q"; depends=[BiocGenerics BiocIO Biostrings GenomeInfoDb GenomicRanges IRanges matrixStats Rsamtools rtracklayer S4Vectors XVector]; }; + BSgenomeForge = derive2 { name="BSgenomeForge"; version="1.4.0"; sha256="0100y9lqj0xjz1ycazn4v74m7h26fxdbb03xa7ryvpdq61b0gc8p"; depends=[Biobase BiocGenerics BiocIO Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors]; }; + BUMHMM = derive2 { name="BUMHMM"; version="1.28.0"; sha256="0c35x7bjp97qiahykkvk8krsnvy1w29qvrb6x8wa4vwn58a56naa"; depends=[Biostrings devtools gtools IRanges stringi SummarizedExperiment]; }; + BUS = derive2 { name="BUS"; version="1.60.0"; sha256="1xwdqz9lyz110bh96ihldwg50k7fbnvnkivyqd9qj1iwk3vz7qd6"; depends=[infotheo minet]; }; + BUScorrect = derive2 { name="BUScorrect"; version="1.22.0"; sha256="1crq6h9s3kxk1z7xpapq1jwwqwpa2fznhykm84k2zjl8jzvc7lmi"; depends=[gplots SummarizedExperiment]; }; + BUSpaRse = derive2 { name="BUSpaRse"; version="1.18.0"; sha256="08lq6g6sh5vgr4nn3cmn5gz735zsf8lwhhlqpg9l3d8lzfcb22d5"; depends=[AnnotationDbi AnnotationFilter BH BiocGenerics biomaRt Biostrings BSgenome dplyr ensembldb GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges magrittr Matrix plyranges Rcpp RcppArmadillo RcppProgress S4Vectors stringr tibble tidyr zeallot]; }; + BUSseq = derive2 { name="BUSseq"; version="1.10.0"; sha256="19ajpfgz3aj1p6955z128smanna1gff6dfgh7dz8vhjyyz5nbi1q"; depends=[gplots S4Vectors SingleCellExperiment SummarizedExperiment]; }; + BaalChIP = derive2 { name="BaalChIP"; version="1.30.0"; sha256="1xm6czgbfz2rjrz5996d0n7xmlh9pd1mw9i8ac66pmn5fi44pbz2"; depends=[coda doBy doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges reshape2 Rsamtools scales]; }; + BadRegionFinder = derive2 { name="BadRegionFinder"; version="1.32.0"; sha256="1hs1mv8gj4w0wk6sw6r08j237vw3lhjrv9zip5nk6l1g1r0pg597"; depends=[biomaRt GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; + Banksy = derive2 { name="Banksy"; version="1.0.0"; sha256="1qz5nhf2qcdwcbi4kbwdjgbxpql8w5391cnb8i73gj54chc8bvn1"; depends=[aricode data_table dbscan igraph irlba leidenAlg matrixStats mclust RcppHungarian S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment uwot]; }; + BaseSpaceR = derive2 { name="BaseSpaceR"; version="1.48.0"; sha256="02f2l42p08xags155qydz97ipg5vya0prmrlw4kvahgbq5p0xm44"; depends=[RCurl RJSONIO]; }; + Basic4Cseq = derive2 { name="Basic4Cseq"; version="1.40.0"; sha256="0ipxhdsqa8q49d2i17kvwyn6w2rpyl9jmq9bhch7cjawykjla5kf"; depends=[Biostrings BSgenome_Ecoli_NCBI_20080805 caTools GenomicAlignments GenomicRanges RCircos]; }; + BasicSTARRseq = derive2 { name="BasicSTARRseq"; version="1.32.0"; sha256="1w69qc81pj3c4gq158ag59wbpm2aaiqmnnb79m0h7dlsnf964cjv"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges S4Vectors]; }; + BatchQC = derive2 { name="BatchQC"; version="2.0.0"; sha256="1kijj3ivlrwk4490jsb7vsrc7kmx32hla52cg3zb3vj6l5cwq7g6"; depends=[data_table DESeq2 dplyr EBSeq ggdendro ggnewscale ggplot2 limma matrixStats pheatmap RColorBrewer reader reshape2 scran shiny SummarizedExperiment sva tibble tidyr tidyverse]; }; + BayesKnockdown = derive2 { name="BayesKnockdown"; version="1.30.0"; sha256="05plmh36s00jh4ckcgvi2s9ypa8mxlsy23mzysazbfsr022x3vqa"; depends=[Biobase]; }; + BayesSpace = derive2 { name="BayesSpace"; version="1.14.0"; sha256="0q1haqsyc61yxz1n197sv3s6csjpns4fi288kf58nnf5jgdwnyx5"; depends=[assertthat BiocFileCache BiocSingular coda DirichletReg ggplot2 Matrix mclust purrr Rcpp RcppArmadillo RcppDist RcppProgress RCurl rhdf5 S4Vectors scales scater scran SingleCellExperiment SummarizedExperiment xgboost]; }; + BeadDataPackR = derive2 { name="BeadDataPackR"; version="1.56.0"; sha256="0wz3prri0mfjczmb432faxfjc99wg4lq26l3a60rmxyxq8mcnpkv"; depends=[]; }; + BgeeDB = derive2 { name="BgeeDB"; version="2.30.0"; sha256="1jbb93inv7z0i8b1jr6ax98gqkqn73m86hj61irgyysk7hn4bbg6"; depends=[Biobase curl data_table digest dplyr graph R_utils RCurl RSQLite tidyr topGO]; }; + BiFET = derive2 { name="BiFET"; version="1.24.0"; sha256="148j41mawxvzyal9lfjy7h1gp0w8zwmgc7s32wiqa30qjcc82snx"; depends=[GenomicRanges poibin]; }; + BiGGR = derive2 { name="BiGGR"; version="1.40.0"; sha256="1ja5j9753rgx61jwkax0mzkxh7ybh3m4ampkr5ikw3afda23wg1z"; depends=[hyperdraw hypergraph LIM limSolve rsbml stringr]; }; + BiRewire = derive2 { name="BiRewire"; version="3.36.0"; sha256="1l3hkq6n7i9j82aym4ngwablj8jqb70a7y6skx0rjkflya6wbim7"; depends=[igraph Matrix Rtsne slam]; }; + BiSeq = derive2 { name="BiSeq"; version="1.44.0"; sha256="12nkdaz54ga133v38mmqaf3xcsx7ps2rcxxvni100vsk93hv155z"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; }; + BicARE = derive2 { name="BicARE"; version="1.62.0"; sha256="0397xg4sj988b0chzfpy23dszpjbdkch59wfynbn4pwyvl0qmp9j"; depends=[Biobase GO_db GSEABase multtest]; }; + BindingSiteFinder = derive2 { name="BindingSiteFinder"; version="2.2.0"; sha256="1icgz7wfayqzr1wd0n7sb71bh149d4d1m7rh5s5ap07llnn7vsq1"; depends=[ComplexHeatmap dplyr forcats GenomeInfoDb GenomicFeatures GenomicRanges ggdist ggforce ggplot2 IRanges kableExtra lifecycle matrixStats plyr RColorBrewer rlang rtracklayer S4Vectors tibble tidyr]; }; + BioCartaImage = derive2 { name="BioCartaImage"; version="1.2.0"; sha256="0kcqhgr6q86b874i56p0cai8kiqbx8q3vk40xq221dzjf19r8ag8"; depends=[magick]; }; + BioCor = derive2 { name="BioCor"; version="1.28.0"; sha256="0jpi51f9cv3sv4l69974bba8c8k0inb6zxviv7i907ldaiiblr07"; depends=[BiocParallel GSEABase Matrix]; }; + BioMVCClass = derive2 { name="BioMVCClass"; version="1.72.0"; sha256="0dfdksk3nc6pzw21sbd4cdqr05489qh4984wv0f906hyb52waxk2"; depends=[Biobase graph MVCClass Rgraphviz]; }; + BioNAR = derive2 { name="BioNAR"; version="1.6.0"; sha256="1airs789p970v5j4nfmsvba70r3yadc4rw3z3sykqnc1qxzinvxq"; depends=[AnnotationDbi clusterCons cowplot data_table dplyr fgsea ggplot2 ggrepel GO_db igraph latex2exp Matrix minpack_lm org_Hs_eg_db poweRlaw Rdpack RSpectra rSpectral scales stringr viridis WGCNA]; }; + BioNERO = derive2 { name="BioNERO"; version="1.12.0"; sha256="02jqlpd31mhxbvksj7ny34f6dv8skkkr76lkiaj5gm078kfr0zx5"; depends=[BiocParallel ComplexHeatmap dynamicTreeCut GENIE3 ggdendro ggnetwork ggplot2 ggrepel igraph intergraph matrixStats minet NetRep patchwork RColorBrewer reshape2 rlang SummarizedExperiment sva WGCNA]; }; + BioNet = derive2 { name="BioNet"; version="1.64.0"; sha256="0lpqvm0cx7pnb99jh7na49x10w2v04xydiwxn9l41ngxysp8v0h6"; depends=[AnnotationDbi Biobase graph igraph RBGL]; }; + BioQC = derive2 { name="BioQC"; version="1.32.0"; sha256="14yrqf5wl9r596zvlpf4y48nykg0gwzlxfgi3kdx0i5pfgvi43vk"; depends=[Biobase edgeR Rcpp]; }; + Biobase = derive2 { name="Biobase"; version="2.64.0"; sha256="09xnl0qq4qsd981i9srw07228lgashcvcavi8k0izdzfyk6ka7m2"; depends=[BiocGenerics]; }; + BiocBaseUtils = derive2 { name="BiocBaseUtils"; version="1.6.0"; sha256="0f8bzhpi6xla52sbvpd20sgli7mp5xfk2aqpcv6jkf8s59jsmn54"; depends=[]; }; + BiocBook = derive2 { name="BiocBook"; version="1.2.0"; sha256="0rdsx2slwp69l6svsaj3pndd6bv318jkla5j84avwgfi63wks092"; depends=[available BiocGenerics cli dplyr gert gh gitcreds glue httr purrr quarto renv rlang rprojroot stringr tibble usethis yaml]; }; + BiocCheck = derive2 { name="BiocCheck"; version="1.40.0"; sha256="0rvr68d5anir7bj913nxwwfj7i3h2dvadcfvjjdbdr3m35wyx1g8"; depends=[BiocBaseUtils BiocFileCache BiocManager biocViews callr codetools graph httr2 knitr rvest stringdist]; }; + BiocFHIR = derive2 { name="BiocFHIR"; version="1.6.0"; sha256="0zw59xb6jxxqg9aiwn6h4ak4056b64y22irkysl51rvdrb12n32h"; depends=[BiocBaseUtils dplyr DT graph jsonlite shiny tidyr visNetwork]; }; + BiocFileCache = derive2 { name="BiocFileCache"; version="2.12.0"; sha256="0jv6hni5x91ssvz4ilhi3y6lylrw4w3xfk8ljmq6gjvyl886sw9f"; depends=[curl DBI dbplyr dplyr filelock httr RSQLite]; }; + BiocGenerics = derive2 { name="BiocGenerics"; version="0.50.0"; sha256="0500ya3df53xx1dfdmk50bh30ja28y6qkdwds1c1m4c7q0h2xmqi"; depends=[]; }; + BiocHail = derive2 { name="BiocHail"; version="1.4.0"; sha256="1p8wkl31c7snv8l8zkmg2hf9pb2p0gif4gfgjia0npi91y2h5hfp"; depends=[basilisk BiocFileCache BiocGenerics dplyr reticulate]; }; + BiocHubsShiny = derive2 { name="BiocHubsShiny"; version="1.4.0"; sha256="19ihc6fi04kbgmlvn5k1cjpckc03p5yfjpc3gjmmf3pn69qgljzf"; depends=[AnnotationHub DT ExperimentHub htmlwidgets S4Vectors shiny shinyAce shinyjs shinythemes shinytoastr]; }; + BiocIO = derive2 { name="BiocIO"; version="1.14.0"; sha256="0ppsldpn3vbliimjvnxadn61crck45j581dw4lc5f3w1vy5vs44h"; depends=[BiocGenerics S4Vectors]; }; + BiocNeighbors = derive2 { name="BiocNeighbors"; version="1.22.0"; sha256="1krg4cs406ymk27qcj3j1jsl8vl4j9k5zvwf4vzxgbw3x6lpywid"; depends=[BiocParallel Matrix Rcpp RcppHNSW S4Vectors]; }; + BiocOncoTK = derive2 { name="BiocOncoTK"; version="1.24.0"; sha256="0h4cr7lrmbyx7kdj81s7ff75svr01rvzn54svqi93vjilawmpbm3"; depends=[bigrquery car ComplexHeatmap curatedTCGAData DBI dplyr DT GenomicFeatures GenomicRanges ggplot2 ggpubr graph httr IRanges magrittr MASS plyr Rgraphviz rjson S4Vectors scales shiny SummarizedExperiment]; }; + BiocParallel = derive2 { name="BiocParallel"; version="1.38.0"; sha256="1miw26r2a8wvgnfr9sapfv6rqk219rmsyjh6v04annafxdxy15ky"; depends=[BH codetools cpp11 futile_logger snow]; }; + BiocPkgTools = derive2 { name="BiocPkgTools"; version="1.22.0"; sha256="1nbzr1yjz65r0y8c312hnvagnc1pdgda4v6sxbpvlkl3z93jsy6x"; depends=[BiocFileCache BiocManager biocViews dplyr DT gh graph htmltools htmlwidgets httr igraph jsonlite magrittr RBGL readr rlang rorcid rvest stringr tibble xml2]; }; + BiocSet = derive2 { name="BiocSet"; version="1.18.0"; sha256="1r1if1k7qgni3dk7gsl4vcyvd6hnhx94rcq5yi9w7dvyyrbvnwwa"; depends=[AnnotationDbi BiocIO dplyr KEGGREST ontologyIndex plyr rlang S4Vectors tibble tidyr]; }; + BiocSingular = derive2 { name="BiocSingular"; version="1.20.0"; sha256="1xl9wn3slj3ywjglb8zq2p0ifx4xwxbqsm99fjlf6hanfhmnxyay"; depends=[beachmat BiocGenerics BiocParallel DelayedArray irlba Matrix Rcpp rsvd S4Vectors ScaledMatrix]; }; + BiocSklearn = derive2 { name="BiocSklearn"; version="1.26.0"; sha256="19s38zpgdscbrqypyg17l1jw53x88lgkcrqg20gchfi6mig36a3w"; depends=[basilisk reticulate SummarizedExperiment]; }; + BiocStyle = derive2 { name="BiocStyle"; version="2.32.0"; sha256="1vm9wj4hzzjivdi6rnxyhxwqscdvbmc45w9zq17h3r53qnva530x"; depends=[BiocManager bookdown knitr rmarkdown yaml]; }; + BiocVersion = derive2 { name="BiocVersion"; version="3.19.1"; sha256="1zhm28313gsbscfhfdbqizvb5v67n4l0dapjmb1xq010ikly95mh"; depends=[]; }; + BiocWorkflowTools = derive2 { name="BiocWorkflowTools"; version="1.30.0"; sha256="1gw0lmdhkzp5ar54yv9jagqmpxp7j9ajfmdqb2y2qrnhh39hymzs"; depends=[BiocStyle bookdown git2r httr knitr rmarkdown rstudioapi stringr usethis]; }; + Biostrings = derive2 { name="Biostrings"; version="2.72.1"; sha256="067vy2v7spbdsknvi0fcpdi085kn8v20pyrhkc7wy357v21h7hgs"; depends=[BiocGenerics crayon GenomeInfoDb IRanges S4Vectors XVector]; }; + BloodGen3Module = derive2 { name="BloodGen3Module"; version="1.12.0"; sha256="0mksc9jfzcj255a01hg8gjrs6k2plkpfqgv951csldvy7vqrdkma"; depends=[circlize ComplexHeatmap ExperimentHub ggplot2 gtools limma matrixStats preprocessCore randomcoloR reshape2 SummarizedExperiment testthat V8]; }; + BridgeDbR = derive2 { name="BridgeDbR"; version="2.14.0"; sha256="0nsn1i5ah3l95wd1afcppxb364l44r3apma0aa79g4jday4zhbv5"; depends=[curl rJava]; }; + BrowserViz = derive2 { name="BrowserViz"; version="2.26.0"; sha256="0wq1vc6m54kb8dw6c0qzw8hvvwjq78lqd18whph2nmywjcy9j9hw"; depends=[BiocGenerics httpuv jsonlite]; }; + BubbleTree = derive2 { name="BubbleTree"; version="2.34.0"; sha256="0l69q8l6dacyqdbfdnxlg70f064xm8w5p07pi2x0baacxv8bs5d4"; depends=[Biobase BiocGenerics BiocStyle biovizBase dplyr e1071 GenomicRanges ggplot2 gridExtra gtable gtools IRanges limma magrittr plyr RColorBrewer WriteXLS]; }; + BufferedMatrix = derive2 { name="BufferedMatrix"; version="1.68.0"; sha256="1rd446pzwplkjzqqg19ba3gn94kvsxxi472n6r9raxrggqic0bmi"; depends=[]; }; + BufferedMatrixMethods = derive2 { name="BufferedMatrixMethods"; version="1.68.0"; sha256="1y8skcqbql4mi1zi53771jwsyw8665b13xyh9bnrv18j18axldk6"; depends=[BufferedMatrix]; }; + BumpyMatrix = derive2 { name="BumpyMatrix"; version="1.12.0"; sha256="1f8xa184x6l363psbqn0a5yh16ghm2mciv726aii58bkln5qwkmb"; depends=[IRanges Matrix S4Vectors]; }; + CAEN = derive2 { name="CAEN"; version="1.12.0"; sha256="1z4prnbh7y6i9b0d3y4fncmsj8vrz4i0k48l69kh14xi9lyhc773"; depends=[PoiClaClu SummarizedExperiment]; }; + CAFE = derive2 { name="CAFE"; version="1.40.0"; sha256="1vq1yf78yfsfnsjpqb89zghzr677mdwvpi5zl3ikz2j5z40h1rjj"; depends=[affy annotate Biobase biovizBase GenomicRanges ggbio ggplot2 gridExtra IRanges]; }; + CAGEfightR = derive2 { name="CAGEfightR"; version="1.24.0"; sha256="1i6q5bwg55d3iydcy3h6j9hg30581vvc592rs5cac310qxzcj8hj"; depends=[assertthat BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicInteractions GenomicRanges Gviz InteractionSet IRanges Matrix pryr rtracklayer S4Vectors SummarizedExperiment]; }; + CAGEr = derive2 { name="CAGEr"; version="2.10.0"; sha256="1amx7l5y1v8ccmlpjmr9wm2dbc85xadx4ayy8m45vabi97j8nrp4"; depends=[BiocGenerics BiocParallel BSgenome CAGEfightR data_table DelayedArray DelayedMatrixStats formula_tools GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges KernSmooth memoise MultiAssayExperiment plyr reshape2 Rsamtools rtracklayer S4Vectors som stringdist stringi SummarizedExperiment vegan VGAM]; }; + CAMERA = derive2 { name="CAMERA"; version="1.60.0"; sha256="1wcihfi7vzdb5xkk2r7cdb4pqdbnph01m3dsz126984rzplpcd44"; depends=[Biobase graph Hmisc igraph RBGL xcms]; }; + CARNIVAL = derive2 { name="CARNIVAL"; version="2.14.0"; sha256="05cjffkhawhrbvd9m4blm8klkhpv939qgnhpyx0mqfmk8b63rc26"; depends=[dplyr igraph lpSolve readr rjson rmarkdown stringr tibble tidyr]; }; + CATALYST = derive2 { name="CATALYST"; version="1.28.0"; sha256="168yfkqlg6af8ndlw4wzb9adg4lgkgkjbsi4a435ks0n4c9dycb7"; depends=[circlize ComplexHeatmap ConsensusClusterPlus cowplot data_table dplyr drc flowCore FlowSOM ggplot2 ggrepel ggridges gridExtra Matrix matrixStats nnls purrr RColorBrewer reshape2 Rtsne S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; }; + CBEA = derive2 { name="CBEA"; version="1.4.0"; sha256="0j43lvz55xawwk723rsfpir6vir5wbxpwslpk4x2frslf5i00mky"; depends=[BiocParallel BiocSet dplyr fitdistrplus generics glue goftest lmom magrittr mixtools Rcpp rlang SummarizedExperiment tibble tidyr TreeSummarizedExperiment]; }; + CBNplot = derive2 { name="CBNplot"; version="1.4.0"; sha256="1n85clswpk1xxfq423sgk38qb9kjkjj2kghnxw8a4618vxypwsrv"; depends=[BiocFileCache bnlearn clusterProfiler depmap dplyr enrichplot ExperimentHub ggdist ggforce ggplot2 ggraph graphite graphlayouts igraph magrittr oaqc org_Hs_eg_db patchwork purrr pvclust reshape2 rlang Rmpfr stringr tidyr]; }; + CCPROMISE = derive2 { name="CCPROMISE"; version="1.30.0"; sha256="0qicm8zgr4897m0ldlmsrchi66b3swfdxy2gv12pnssjmrybq5di"; depends=[Biobase CCP GSEABase PROMISE]; }; + CCPlotR = derive2 { name="CCPlotR"; version="1.2.0"; sha256="05qh8yqk2yv4vw314aflys7qn4kwhy839wj5cdw9iysaklkyjscg"; depends=[circlize ComplexHeatmap dplyr forcats ggbump ggh4x ggplot2 ggraph ggtext igraph patchwork plyr RColorBrewer scales scatterpie stringr tibble tidyr viridis]; }; + CDI = derive2 { name="CDI"; version="1.2.0"; sha256="0nc4s8prs6p0k7qp2lc5fzdqx177y1xamrwizldwi5p3yq1zq1nx"; depends=[BiocParallel ggplot2 ggsci matrixStats reshape2 Seurat SeuratObject SingleCellExperiment SummarizedExperiment]; }; + CEMiTool = derive2 { name="CEMiTool"; version="1.28.0"; sha256="1pcyw8njyrcjriyzq52km0qhn1n288gqvn1qdkzx2yfv4a1i6rxk"; depends=[clusterProfiler data_table dplyr DT fastcluster fgsea ggdendro ggplot2 ggpmisc ggrepel ggthemes gridExtra gtable htmltools igraph intergraph knitr matrixStats network pracma rmarkdown scales sna stringr WGCNA]; }; + CFAssay = derive2 { name="CFAssay"; version="1.38.0"; sha256="1j2bprw0dq4cn4md2ixh3jmk507w0zlzm65gvx9k3z924la0hyhv"; depends=[]; }; + CGEN = derive2 { name="CGEN"; version="3.40.0"; sha256="01ayir95zhdcxnczzggx914q9x0awcr3hvfxvswqdjcl5a5490k1"; depends=[mvtnorm survival]; }; + CGHbase = derive2 { name="CGHbase"; version="1.64.0"; sha256="1fz39fdkfvfhzm69pfvliqvp48wsldwm3kpgbsaacrdh46jg5vzk"; depends=[Biobase marray]; }; + CGHcall = derive2 { name="CGHcall"; version="2.66.0"; sha256="1gjd3ggiw93cwcacjb1472ia98aaapj9gln04v5pbwmp2r4xfcs7"; depends=[Biobase CGHbase DNAcopy impute snowfall]; }; + CGHnormaliter = derive2 { name="CGHnormaliter"; version="1.58.0"; sha256="06zsh097v8hfz9yh7q4ppvnlxvgqgs3yzm724khbzi8xfz1h3yja"; depends=[Biobase CGHbase CGHcall]; }; + CGHregions = derive2 { name="CGHregions"; version="1.62.0"; sha256="0swyfbc37mxghphgrlh735gg3w3wnlmplrrlksr7jb8gdzvcczbk"; depends=[Biobase CGHbase]; }; + CHETAH = derive2 { name="CHETAH"; version="1.20.0"; sha256="19vb0c9kla6jn79v5sc8sig195lnzzhki2089pvjsy4gw2q3nmnh"; depends=[bioDist corrplot cowplot dendextend ggplot2 pheatmap plotly reshape2 S4Vectors shiny SingleCellExperiment SummarizedExperiment]; }; + CHRONOS = derive2 { name="CHRONOS"; version="1.32.0"; sha256="06ynbgmzp820l85n25lrhks1vl1ccaf3giypgp59s79v496vps3x"; depends=[biomaRt circlize doParallel foreach graph igraph openxlsx RBGL RCurl rJava XML]; }; + CIMICE = derive2 { name="CIMICE"; version="1.12.0"; sha256="18m6mb1r9s8cqi1lsignmf9p8q7qigazxyif14z6f1h5kdcs6707"; depends=[assertthat dplyr expm ggcorrplot ggplot2 ggraph glue igraph maftools Matrix networkD3 purrr tidygraph tidyr visNetwork]; }; + CINdex = derive2 { name="CINdex"; version="1.32.0"; sha256="1cgq0bcrgdwzxci47issdck4pz8pnbpfzz7i57mi0ga3jqih0g2i"; depends=[bitops dplyr GenomeInfoDb GenomicRanges gplots gridExtra IRanges png S4Vectors som stringr]; }; + CMA = derive2 { name="CMA"; version="1.62.0"; sha256="08q64y5f52p3skpxk7fva30h41ar3751jk3528gicnqngbb3wv3g"; depends=[Biobase]; }; + CNAnorm = derive2 { name="CNAnorm"; version="1.50.0"; sha256="0z9x4khrsdinb5dhi7zgfa4pj55h7300fp3a636akwjq3pwzlvlp"; depends=[DNAcopy]; }; + CNEr = derive2 { name="CNEr"; version="1.40.0"; sha256="19kfh7p8zlb1nbwpsj6i1b7pqy829dij7n7iavznhxw44cmif6sv"; depends=[annotate BiocGenerics Biostrings DBI GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 GO_db IRanges KEGGREST poweRlaw pwalign R_utils readr reshape2 RSQLite rtracklayer S4Vectors XVector]; }; + CNORdt = derive2 { name="CNORdt"; version="1.46.0"; sha256="1f9d2jmqxcmzvwvshf8yni0j28y13cdb5w9z1mcl7f3gcd0vn3rx"; depends=[abind CellNOptR]; }; + CNORfeeder = derive2 { name="CNORfeeder"; version="1.44.0"; sha256="1q1xpdg0qbh5cqnjc080gbkaw20p3xksc76f7dxsprlnzzad9id5"; depends=[CellNOptR graph]; }; + CNORfuzzy = derive2 { name="CNORfuzzy"; version="1.46.0"; sha256="0wp9ma4c1nph6vximqizgmwvq29ijf5wkjda7yxc23hl51wig0gg"; depends=[CellNOptR nloptr]; }; + CNORode = derive2 { name="CNORode"; version="1.46.0"; sha256="0j66h000p02qnd8jrhdydggxiljynndfvjv9vlh844mb8n0dxx53"; depends=[CellNOptR genalg]; }; + CNTools = derive2 { name="CNTools"; version="1.60.0"; sha256="1m049jdb1vp5161q4zhcxwbzbzappdg02h80ar9ppwd10chf3bsm"; depends=[genefilter]; }; + CNVMetrics = derive2 { name="CNVMetrics"; version="1.8.0"; sha256="1vf04v7sr4f8mizzvbr3q4w83vdb62mabg5pl5dh53zvhrrzk1hi"; depends=[BiocParallel GenomicRanges gridExtra IRanges magrittr pheatmap rBeta2009 S4Vectors]; }; + CNVPanelizer = derive2 { name="CNVPanelizer"; version="1.36.0"; sha256="0gpi1psr14b572xn4qx92lfxwy6d7jdkarf67w7f3glvif93vm9k"; depends=[BiocGenerics foreach GenomeInfoDb GenomicRanges ggplot2 gplots IRanges NOISeq openxlsx plyr reshape2 Rsamtools S4Vectors shiny shinyFiles shinyjs stringr testthat]; }; + CNVRanger = derive2 { name="CNVRanger"; version="1.20.0"; sha256="1lwav9nv9rm7zyqxl9sx46vp4016i2175hvys3skj8myyjgcdd7n"; depends=[BiocGenerics BiocParallel data_table edgeR GDSArray gdsfmt GenomeInfoDb GenomicRanges IRanges lattice limma plyr qqman RaggedExperiment rappdirs reshape2 S4Vectors SNPRelate SummarizedExperiment]; }; + CNVfilteR = derive2 { name="CNVfilteR"; version="1.18.0"; sha256="1jqpdqcnyxww2h5x784yl3i07i3x5kf0xyqgv558rzs936gzc23a"; depends=[assertthat Biostrings CopyNumberPlots GenomeInfoDb GenomicRanges IRanges karyoploteR pracma regioneR Rsamtools SummarizedExperiment VariantAnnotation]; }; + CNViz = derive2 { name="CNViz"; version="1.12.0"; sha256="1s7j8lrl999b7v76z91y56m8nyy3lwjmqlnd1qpxg23jdlgb6bhv"; depends=[CopyNumberPlots dplyr DT GenomicRanges karyoploteR magrittr plotly scales shiny]; }; + CNVrd2 = derive2 { name="CNVrd2"; version="1.42.0"; sha256="1kbs82a7pri8xv3ci9xdi47ml7r70wjxi0jnsxhrzbaqjss5b4v6"; depends=[DNAcopy ggplot2 gridExtra IRanges rjags Rsamtools VariantAnnotation]; }; + COCOA = derive2 { name="COCOA"; version="2.18.0"; sha256="0achirgsp2psybk140wiiagjr9qsapkhdmy4mnf5zg4hc8nx3yn3"; depends=[Biobase BiocGenerics ComplexHeatmap data_table fitdistrplus GenomicRanges ggplot2 IRanges MIRA S4Vectors simpleCache tidyr]; }; + CODEX = derive2 { name="CODEX"; version="1.36.0"; sha256="0p3d7hqi14qclz4d7fhp3x4z2dnkwpzpzlgrwacj4njkw94cwdaz"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb IRanges Rsamtools S4Vectors]; }; + COMPASS = derive2 { name="COMPASS"; version="1.42.0"; sha256="0xh3ysmcz4bjqcyqdv9wrmfgblj3k7g7i6wiw2m1vmx5gf98rfpa"; depends=[abind BiocStyle clue coda data_table dplyr foreach knitr magrittr pdist plyr RColorBrewer Rcpp reshape2 rlang rmarkdown scales tidyr]; }; + CONFESS = derive2 { name="CONFESS"; version="1.32.0"; sha256="14m7nz6ls58g4c45x5m7r30ms3kgxslg22jikjsi1cx49ycyk9dl"; depends=[changepoint cluster contrast data_table EBImage ecp flexmix flowClust flowCore flowMeans flowMerge flowPeaks foreach ggplot2 limma MASS moments outliers plotrix raster readbitmap reshape2 SamSPECTRAL waveslim wavethresh zoo]; }; + CONSTANd = derive2 { name="CONSTANd"; version="1.12.0"; sha256="17vfhh6w2sxnliv68wraf24z85dw369cs58nsrql6xgrm1wyp6h6"; depends=[]; }; + COSNet = derive2 { name="COSNet"; version="1.38.0"; sha256="0bb5lz4yqhhq2qjx7381877bwyrmh8286m9yq3fhyhzm4g6l4hfn"; depends=[]; }; + COTAN = derive2 { name="COTAN"; version="2.4.3"; sha256="13yw1mrx38im9g87is0ska6piw0ibzfmkk1h46alj1hxc0n3n5gh"; depends=[assertthat BiocSingular circlize ComplexHeatmap dendextend dplyr ggplot2 ggrepel ggthemes Matrix parallelDist parallelly PCAtools plyr RColorBrewer Rfast rlang scales Seurat stringr tibble tidyr umap withr zeallot]; }; + CRISPRball = derive2 { name="CRISPRball"; version="1.0.0"; sha256="1gxwmasr37azvc7h98izv0npxq5n7hvk1bvl2rgj5fv6da2ddmki"; depends=[circlize colourpicker ComplexHeatmap dittoSeq DT ggplot2 htmlwidgets InteractiveComplexHeatmap MAGeCKFlute matrixStats PCAtools plotly shiny shinyBS shinycssloaders shinyjqui shinyjs shinyWidgets]; }; + CRISPRseek = derive2 { name="CRISPRseek"; version="1.44.0"; sha256="1vmqwpbl1gplrr45bqs90np0cmrkqshw660k4sxmj9s9k0xdms7c"; depends=[BiocGenerics Biostrings BSgenome data_table DelayedArray dplyr GenomeInfoDb GenomicRanges hash IRanges keras mltools reticulate rhdf5 S4Vectors seqinr XVector]; }; + CRImage = derive2 { name="CRImage"; version="1.52.0"; sha256="0nnyzgdn25s2m9x4xglp12z2b4fai5sbfnx935qadk0b9gb62bdg"; depends=[aCGH DNAcopy e1071 EBImage foreach MASS sgeostat]; }; + CSAR = derive2 { name="CSAR"; version="1.56.0"; sha256="0gdzj5czyj2r7gf7fkliydy6w1cyl92lby071jfyihfz5hwh55yr"; depends=[GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + CSSQ = derive2 { name="CSSQ"; version="1.16.0"; sha256="1jwrp0b6qkkc538j1vshqgkazajs9q3fq3dda3cl9a8cbma9jpfg"; depends=[GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + CTDquerier = derive2 { name="CTDquerier"; version="2.12.0"; sha256="11z3gy6gn735dydjissdc09kllfd9qvg0gsf5v7a700fz6d78j2a"; depends=[BiocFileCache ggplot2 gridExtra igraph RCurl S4Vectors stringdist stringr]; }; + CTSV = derive2 { name="CTSV"; version="1.6.0"; sha256="1m7a0dqkpiwf234xags4fpg7s41bdhmsdd2ma375w49624wbwkyz"; depends=[BiocParallel knitr pscl qvalue SpatialExperiment SummarizedExperiment]; }; + CTdata = derive2 { name="CTdata"; version="1.4.0"; sha256="0hq3jfgb1sxzbs99m2r2xnymjz9dwaim3zpkn6icwgrfbgxil82l"; depends=[ExperimentHub]; }; + CTexploreR = derive2 { name="CTexploreR"; version="1.0.0"; sha256="0ld0hzd7vynwvks0bjggc3kfgdzb0jlsjxn1ggk68f2gxrqxv8i8"; depends=[BiocGenerics circlize ComplexHeatmap CTdata dplyr GenomicRanges ggplot2 ggrepel IRanges MatrixGenerics rlang SingleCellExperiment SummarizedExperiment tibble tidyr]; }; + CaDrA = derive2 { name="CaDrA"; version="1.2.0"; sha256="1m7ggdji6j64b6mz6ak2y8f8xyyi8l1gig5b13ksz7j6fgcbyx71"; depends=[doParallel ggplot2 gplots gtable MASS misc3d plyr ppcor R_cache reshape2 SummarizedExperiment]; }; + CaMutQC = derive2 { name="CaMutQC"; version="1.0.0"; sha256="1rri2730mpmz0nqb26kqfq950sgw0x97j8xk9vw09m7g89973zzs"; depends=[clusterProfiler data_table dplyr DT ggplot2 maftools MesKit org_Hs_eg_db stringr tidyr vcfR]; }; + Cardinal = derive2 { name="Cardinal"; version="3.6.2"; sha256="038dlgr4p1x42hb5xrz8apvdi4d18si2vr3r8g3i4aiyvpc2rfwj"; depends=[Biobase BiocGenerics BiocParallel CardinalIO EBImage irlba Matrix matter nlme ProtGenerics S4Vectors]; }; + CardinalIO = derive2 { name="CardinalIO"; version="1.2.1"; sha256="1kzqz2zba8i5z1pkwwi0hzb6fm7xh22bymkk1jwicyrk94fzfw1l"; depends=[matter ontologyIndex S4Vectors]; }; + Category = derive2 { name="Category"; version="2.70.0"; sha256="0paz6h8rsbqvlxxj4di8cl76aybgjr842z5gdv8xi6c2d7zwbclw"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI genefilter graph GSEABase Matrix RBGL]; }; + CausalR = derive2 { name="CausalR"; version="1.36.0"; sha256="0rf37qjl80wczgmb8lbnvzyq10v1fkqdgll24cg4b3vfhsscw0fl"; depends=[igraph]; }; + CeTF = derive2 { name="CeTF"; version="1.16.0"; sha256="0vpy0ns19wnq9pqhkc1dlx2b0y9rjxznq61z242p53gvh05zmzxi"; depends=[circlize clusterProfiler ComplexHeatmap DESeq2 dplyr GenomicTools_fileHandler GGally ggnetwork ggplot2 ggpubr ggrepel igraph Matrix network Rcpp RcppArmadillo RCy3 S4Vectors SummarizedExperiment]; }; + CellBarcode = derive2 { name="CellBarcode"; version="1.10.0"; sha256="006mlhzw5pwdr335q27f05jwwwra8fs563qph7ghlr8s7ws55q9g"; depends=[BH Biostrings Ckmeans_1d_dp data_table egg ggplot2 magrittr plyr Rcpp Rsamtools S4Vectors seqinr ShortRead stringr zlibbioc]; }; + CellBench = derive2 { name="CellBench"; version="1.20.0"; sha256="0azswhd2r9yf2qlz31105kk911iaxfxd2b4drvdq2f57asqw6mwm"; depends=[assertthat BiocFileCache BiocGenerics BiocParallel dplyr glue lubridate magrittr memoise purrr rappdirs rlang SingleCellExperiment tibble tidyr tidyselect]; }; + CellMapper = derive2 { name="CellMapper"; version="1.30.0"; sha256="058f2ik0v7fw7cbk5fhc90zifg2dzc8bmrv0kdd2rshvxfjp48xv"; depends=[S4Vectors]; }; + CellMixS = derive2 { name="CellMixS"; version="1.20.0"; sha256="16l2kw8rbnhn4qyz6sg1pnjfc6cjc12lsx5qzyysnpbpmgm7yqrv"; depends=[BiocGenerics BiocNeighbors BiocParallel cowplot dplyr ggplot2 ggridges kSamples magrittr purrr scater SingleCellExperiment SummarizedExperiment tidyr viridis]; }; + CellNOptR = derive2 { name="CellNOptR"; version="1.50.0"; sha256="0b6q0xrhyqnpzwkwsdywv008axhikmagpx11z85vik1mml12nhs7"; depends=[ggplot2 graph igraph RBGL RCurl Rgraphviz rmarkdown stringi stringr XML]; }; + CellScore = derive2 { name="CellScore"; version="1.24.0"; sha256="17aspmnfs4asixn6cc12k0q4an70642cgx0wy650aqhhkqjlyq88"; depends=[Biobase gplots lsa RColorBrewer squash SummarizedExperiment]; }; + CellTrails = derive2 { name="CellTrails"; version="1.22.0"; sha256="0pqazyf5da9zw95gpmhlj9mbhvv78c0rl6cncy3pij293xcy02l4"; depends=[Biobase BiocGenerics cba dendextend dtw EnvStats ggplot2 ggrepel igraph maptree mgcv reshape2 Rtsne SingleCellExperiment SummarizedExperiment]; }; + CelliD = derive2 { name="CelliD"; version="1.12.0"; sha256="0c7hls5qasjd5ahrqxp2mpd402jc12pi0pgy7spcbp1fkqm8qvbl"; depends=[BiocParallel data_table fastmatch fgsea ggplot2 glue irlba Matrix matrixStats pbapply Rcpp RcppArmadillo reticulate Rtsne scater Seurat SingleCellExperiment stringr SummarizedExperiment tictoc umap]; }; + CexoR = derive2 { name="CexoR"; version="1.42.0"; sha256="09376wzlknf8nlq81rrbbfsbbgd4mi5aagry51nykw5vc0870vdn"; depends=[genomation GenomeInfoDb GenomicRanges idr IRanges RColorBrewer Rsamtools rtracklayer S4Vectors]; }; + ChAMP = derive2 { name="ChAMP"; version="2.34.0"; sha256="06q539yhbmbp7qr71cwjai2vdw5nnhhjdv2ajlqmlyjpg04arc7v"; depends=[bumphunter ChAMPdata combinat dendextend DMRcate DNAcopy doParallel DT GenomicRanges ggplot2 globaltest goseq Hmisc Illumina450ProbeVariants_db IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest illuminaio impute isva kpmt limma marray matrixStats minfi missMethyl plotly plyr preprocessCore prettydoc quadprog qvalue RColorBrewer rmarkdown RPMM shiny shinythemes sva wateRmelon]; }; + ChIPComp = derive2 { name="ChIPComp"; version="1.34.0"; sha256="013lmgdkj596gqzm0nlxjqpv0w94hap9vndp5znqpk4inq88gj8m"; depends=[BiocGenerics BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges limma Rsamtools rtracklayer S4Vectors]; }; + ChIPQC = derive2 { name="ChIPQC"; version="1.40.0"; sha256="0lnk5lchwjnrr03x2r6lwgrja42n0rhfp5w9sya2y69da47bcks4"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors TxDb_Celegans_UCSC_ce6_ensGene TxDb_Dmelanogaster_UCSC_dm3_ensGene TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene TxDb_Rnorvegicus_UCSC_rn4_ensGene]; }; + ChIPXpress = derive2 { name="ChIPXpress"; version="1.48.0"; sha256="09lkm6s98ip9pw9cwdx8a0z816krr4cgzrcrd7b3d4v4bcywsy7z"; depends=[affy biganalytics bigmemory Biobase ChIPXpressData frma GEOquery]; }; + ChIPanalyser = derive2 { name="ChIPanalyser"; version="1.26.0"; sha256="0jxsy6xd4cr3w5zjjxkziiqpzhg8fld0fh4c3rr34823646ly9ja"; depends=[BiocManager Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges RColorBrewer RcppRoll ROCR rtracklayer S4Vectors]; }; + ChIPexoQual = derive2 { name="ChIPexoQual"; version="1.28.0"; sha256="0y39fpbnykqf5ycpi9q3rw73dkn2ksll7n6nafimxvxsh463d8ky"; depends=[BiocParallel biovizBase broom data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 hexbin IRanges RColorBrewer rmarkdown Rsamtools S4Vectors scales viridis]; }; + ChIPpeakAnno = derive2 { name="ChIPpeakAnno"; version="3.38.0"; sha256="1g7p53g91xx3x10kad2f190bmg10ryp928m0q5wxz9n8lycb5rgl"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings data_table DBI dplyr ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 graph InteractionSet IRanges KEGGREST matrixStats multtest pwalign RBGL regioneR Rsamtools rtracklayer S4Vectors scales stringr SummarizedExperiment tibble tidyr universalmotif VennDiagram]; }; + ChIPseeker = derive2 { name="ChIPseeker"; version="1.40.0"; sha256="00iknjk7vgj48vj1pp7l98g7nvc3x495z3jcq5nbvdiff02faj1f"; depends=[AnnotationDbi aplot BiocGenerics boot dplyr enrichplot GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gtools IRanges magrittr plotrix rtracklayer S4Vectors tibble TxDb_Hsapiens_UCSC_hg19_knownGene yulab_utils]; }; + ChIPseqR = derive2 { name="ChIPseqR"; version="1.58.0"; sha256="1lgwy6qprrvx1yv04vx567kr5b6mwz46kwafsqldwgqr2by45kgm"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; }; + ChIPsim = derive2 { name="ChIPsim"; version="1.58.0"; sha256="1cwn6khf8z3ijyjgz0sih24la4fw54ynw9vy0z2hi17vnp4136qi"; depends=[Biostrings IRanges ShortRead XVector]; }; + ChemmineOB = derive2 { name="ChemmineOB"; version="1.42.0"; sha256="17yvmdg16pb1dmx160n6vcgw3sa1yf40f8yzivdyic3sckn4z4bw"; depends=[BH BiocGenerics Rcpp zlibbioc]; }; + ChemmineR = derive2 { name="ChemmineR"; version="3.56.0"; sha256="1252xy33bgjrd4gh4shrgzklgxry2lf67svzxjra5yckf8am0rdc"; depends=[base64enc BH BiocGenerics DBI digest DT ggplot2 gridExtra jsonlite png Rcpp RCurl rjson rsvg stringi]; }; + Chicago = derive2 { name="Chicago"; version="1.32.0"; sha256="05djywxsyfxb26d0clx51q7wmsw3rq56va444d6iy5n7xlhj9m94"; depends=[data_table Delaporte Hmisc MASS matrixStats]; }; + ChromHeatMap = derive2 { name="ChromHeatMap"; version="1.58.0"; sha256="1kzrx26rj7wfki6l5g1426p30fch6b92x0y06rg17i3psbmmkmqg"; depends=[annotate AnnotationDbi Biobase BiocGenerics GenomicRanges IRanges rtracklayer]; }; + ChromSCape = derive2 { name="ChromSCape"; version="1.14.0"; sha256="12chaigwnqm765p0qlf00s94kkg3dphj2cbqv3vfsyya54hbhfzr"; depends=[batchelor BiocParallel colorRamps colourpicker ConsensusClusterPlus coop DelayedArray dplyr DT edgeR forcats fs GenomicRanges gggenes ggplot2 ggrepel gridExtra IRanges irlba jsonlite kableExtra Matrix matrixTests msigdbr plotly qs qualV Rcpp rlist Rsamtools rtracklayer Rtsne S4Vectors scater scran shiny shinycssloaders shinydashboard shinydashboardPlus shinyFiles shinyhelper shinyjs shinyWidgets SingleCellExperiment stringdist stringr SummarizedExperiment tibble tidyr umap viridis]; }; + CircSeqAlignTk = derive2 { name="CircSeqAlignTk"; version="1.6.0"; sha256="1i9izbf9mzlc7sl2zi5gj4dhxa6mq9kkyysxdq9cj4myhrp9hgwz"; depends=[BiocGenerics Biostrings dplyr ggplot2 htmltools IRanges magrittr plotly R_utils Rbowtie2 Rhisat2 rlang Rsamtools S4Vectors shiny shinyFiles shinyjs ShortRead tidyr]; }; + CiteFuse = derive2 { name="CiteFuse"; version="1.16.0"; sha256="1vxynidr7p0khq54d08vzzh2ijaxx1ghm7pxnpg7zppfxvlmsh35"; depends=[compositions cowplot dbscan ggplot2 ggraph ggridges gridExtra igraph Matrix mixtools pheatmap randomForest Rcpp reshape2 rhdf5 rlang Rtsne S4Vectors scales scran SingleCellExperiment SummarizedExperiment uwot]; }; + ClassifyR = derive2 { name="ClassifyR"; version="3.8.2"; sha256="1p78lxcannrfif2029pksc1minzf4jp0p4r79b7rz06p3nq54wav"; depends=[BiocParallel dplyr genefilter generics ggplot2 ggpubr ggupset MultiAssayExperiment ranger reshape2 rlang S4Vectors survival tidyr]; }; + Clomial = derive2 { name="Clomial"; version="1.40.0"; sha256="17n0s9ppjfcvzb6fyyny61r1hdh4vyf6nf1yjd01vnw8wzyy01f6"; depends=[matrixStats permute]; }; + CluMSID = derive2 { name="CluMSID"; version="1.20.0"; sha256="02y79fhzx2hzwj8sjafywm7zqqar48b1m156ld60jjvskrv8ywqf"; depends=[ape Biobase dbscan GGally ggplot2 gplots MSnbase mzR network plotly RColorBrewer S4Vectors sna]; }; + ClustAll = derive2 { name="ClustAll"; version="1.0.0"; sha256="13qg0r6lqvzyggkf8gjyxh8d871f483fcrhgbhr4xwpfpwssv8k8"; depends=[bigstatsr circlize cluster clValid ComplexHeatmap doSNOW dplyr FactoMineR flock foreach fpc ggplot2 mice modeest networkD3 pbapply RColorBrewer]; }; + ClustIRR = derive2 { name="ClustIRR"; version="1.2.0"; sha256="1vp3yj16c8irifcvsn0ibvvz8kzbmsf81112cx1c7x6kj132hprx"; depends=[blaster igraph pwalign stringdist visNetwork]; }; + ClusterFoldSimilarity = derive2 { name="ClusterFoldSimilarity"; version="1.0.0"; sha256="136bh473b8fznxlrszvxr4w0q6y2cxhhm0xd43fka5wq130x3nr9"; depends=[BiocParallel cowplot dplyr ggdendro ggplot2 igraph Matrix reshape2 scales Seurat SeuratObject SingleCellExperiment]; }; + ClusterJudge = derive2 { name="ClusterJudge"; version="1.26.0"; sha256="012n1g47jri9d7cwxwli34xrd5qnv1ghps79l2xin3pbq5fr5h03"; depends=[httr infotheo jsonlite lattice latticeExtra]; }; + ClusterSignificance = derive2 { name="ClusterSignificance"; version="1.32.0"; sha256="0n12085247f51n8sp7fic7il73h9k25fkc8sj7wr7nmi81j497ah"; depends=[pracma princurve RColorBrewer scatterplot3d]; }; + CoCiteStats = derive2 { name="CoCiteStats"; version="1.76.0"; sha256="0v3b39nc53c6gzi4ghp5n64jzcx5gv11s8ayaq6f3426732cc2kx"; depends=[AnnotationDbi org_Hs_eg_db]; }; + CoGAPS = derive2 { name="CoGAPS"; version="3.24.0"; sha256="1yq625qb5hb0j5jf0r6sxyhwm1zlycv4dkfr3kv2hkapfshirk2b"; depends=[BH BiocParallel cluster dplyr fgsea forcats ggplot2 gplots RColorBrewer Rcpp rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; }; + Cogito = derive2 { name="Cogito"; version="1.10.0"; sha256="1xin0jxc38qzdh6jfq4pkydsxbyf36pl5b4vipgw145nvll537vr"; depends=[AnnotationDbi BiocManager entropy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 jsonlite magrittr rmarkdown S4Vectors TxDb_Mmusculus_UCSC_mm9_knownGene]; }; + ComPrAn = derive2 { name="ComPrAn"; version="1.12.0"; sha256="0nj1h3chqc1pspaj2r5ccxswdfz8zmwaqa1v3nmav54z5l5s70iv"; depends=[data_table dplyr DT forcats ggplot2 magrittr purrr RColorBrewer rio rlang scales shiny shinydashboard shinyjs stringr tibble tidyr VennDiagram]; }; + ComplexHeatmap = derive2 { name="ComplexHeatmap"; version="2.20.0"; sha256="1ppzx850nvvdhz2xiggr43c79w0nr0vmsmmnszasd4flf3jm7v8v"; depends=[circlize clue codetools colorspace digest doParallel foreach GetoptLong GlobalOptions IRanges matrixStats png RColorBrewer]; }; + CompoundDb = derive2 { name="CompoundDb"; version="1.8.0"; sha256="10rg8419ng2zmgn7ydlywxsfqdz8m15rs5wmsicfngagd2nwp5mf"; depends=[AnnotationFilter Biobase BiocGenerics BiocParallel ChemmineR DBI dbplyr dplyr IRanges jsonlite MetaboCoreUtils MsCoreUtils ProtGenerics RSQLite S4Vectors Spectra tibble xml2]; }; + ConsensusClusterPlus = derive2 { name="ConsensusClusterPlus"; version="1.68.0"; sha256="0y91kz1n3byadk505432cnlj9dfiw521fgb460d6dmly9s0d9yif"; depends=[ALL Biobase cluster]; }; + CopyNumberPlots = derive2 { name="CopyNumberPlots"; version="1.20.0"; sha256="1b3yschvrwsaj5szrnwbwrxswfxvalfs495q26g1r7w6l26qjv5b"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges karyoploteR regioneR rhdf5 Rsamtools SummarizedExperiment VariantAnnotation]; }; + CoreGx = derive2 { name="CoreGx"; version="2.8.0"; sha256="05fyncpqiq08a169rjwyc117wkyckh714z0is2r0g79920i36jas"; depends=[bench Biobase BiocGenerics BiocParallel BumpyMatrix checkmate crayon data_table glue lsa MatrixGenerics MultiAssayExperiment piano rlang S4Vectors SummarizedExperiment]; }; + Cormotif = derive2 { name="Cormotif"; version="1.50.0"; sha256="0lg52ixswgd7fa9z47sdm1ka49xyllgn04nz21bmv1488abpfm9d"; depends=[affy limma]; }; + CoverageView = derive2 { name="CoverageView"; version="1.42.0"; sha256="1wgkn2adcxl6js3cvawhvzpxm3nmnnc16wbnzkrnsnd9l12aasih"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; + CrispRVariants = derive2 { name="CrispRVariants"; version="1.32.0"; sha256="1nlmznpypfabzrn430hs4k3b8zbw6n1brfy1x2j00bnq3sdd7zgc"; depends=[AnnotationDbi BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges reshape2 Rsamtools S4Vectors]; }; + CuratedAtlasQueryR = derive2 { name="CuratedAtlasQueryR"; version="1.2.0"; sha256="0b0p4q4nsn1bxxyz61gh9r9bqkwkmjybqrv1ij565kbjnwimbcxj"; depends=[assertthat BiocGenerics cli DBI dbplyr dplyr duckdb glue HDF5Array httr purrr rlang S4Vectors Seurat SeuratObject SingleCellExperiment stringr SummarizedExperiment tibble]; }; + CyTOFpower = derive2 { name="CyTOFpower"; version="1.10.0"; sha256="158ixl91yfhzik2d22xijarllirbxg33783i5pxixcdz3amp1z56"; depends=[CytoGLMM diffcyt dplyr DT ggplot2 magrittr rlang shiny shinyFeedback shinyjs shinyMatrix SummarizedExperiment tibble tidyr]; }; + CytoDx = derive2 { name="CytoDx"; version="1.24.0"; sha256="0lj5j7dzsd643mi0056gbrdbajcmy40bwy4rcicq75lvjc3cxlpd"; depends=[doParallel dplyr flowCore glmnet rpart rpart_plot]; }; + CytoGLMM = derive2 { name="CytoGLMM"; version="1.12.0"; sha256="1dfrp97mx93fdx4mrd4p8w2v37hq9h5b829l75vxxpmx2xqv4c7a"; depends=[BiocParallel caret cowplot doParallel dplyr factoextra flexmix ggplot2 ggrepel logging magrittr MASS Matrix mbest pheatmap RColorBrewer rlang stringr strucchange tibble tidyr]; }; + CytoMDS = derive2 { name="CytoMDS"; version="1.0.0"; sha256="050zzhhiy8gckism9s20l1kb1mhfgkd9prci0aqg23fzlv6d6inm"; depends=[BiocParallel CytoPipeline flowCore ggforce ggplot2 ggrepel patchwork pracma reshape2 rlang smacof transport withr]; }; + CytoML = derive2 { name="CytoML"; version="2.16.0"; sha256="11kflx3yahl7xjl6x2rgpd4hl5y69qgarzhalmz4qdci7b7ln7kr"; depends=[BH Biobase cpp11 cytolib data_table dplyr flowCore flowWorkspace ggcyto graph jsonlite openCyto RBGL Rgraphviz Rhdf5lib RProtoBufLib tibble XML yaml]; }; + CytoPipeline = derive2 { name="CytoPipeline"; version="1.4.0"; sha256="1c8w2v8990z8kp7wxc69ildhj0v5g3zx05dzyhb16nrlnb7bfcc4"; depends=[BiocFileCache BiocParallel diagram flowAI flowCore ggcyto ggplot2 jsonlite PeacoQC rlang scales withr]; }; + CytoPipelineGUI = derive2 { name="CytoPipelineGUI"; version="1.2.0"; sha256="1xr7c8gcccxz8zl74amh35r2va3g58c2lwvl1j9py5g8ipmwprzj"; depends=[CytoPipeline flowCore ggplot2 plotly shiny]; }; + DAMEfinder = derive2 { name="DAMEfinder"; version="1.16.0"; sha256="1ffqa7a3a0f3m58j6al2hd7aa8bamv4z170y4yn1vr1f8jrb7kq5"; depends=[BiocGenerics Biostrings bumphunter cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges limma plyr readr reshape2 Rsamtools S4Vectors stringr SummarizedExperiment VariantAnnotation]; }; + DAPAR = derive2 { name="DAPAR"; version="1.36.2"; sha256="1800c6g39gg9q43v1s5r13qm4aj53x18qzbbyz75fpwrril967gr"; depends=[Biobase DAPARdata foreach highcharter MSnbase]; }; + DART = derive2 { name="DART"; version="1.52.0"; sha256="1zqzcssiibb9cl1iv6rzfmwlcms2llina41j5lkx0i9s8xmrqi06"; depends=[igraph]; }; + DCATS = derive2 { name="DCATS"; version="1.2.0"; sha256="1hf275h40d5ggya58malxbrmzqi5gi04w847gc567qzpzs1bqfp2"; depends=[aod e1071 matrixStats MCMCpack robustbase]; }; + DECIPHER = derive2 { name="DECIPHER"; version="3.0.0"; sha256="1bgzl3sy4l5xfgxrkw8z1dvygkn2dgcl2fl9ah13ggs8hc9h9nlm"; depends=[Biostrings DBI IRanges S4Vectors XVector]; }; + DEFormats = derive2 { name="DEFormats"; version="1.32.0"; sha256="0sxflb9b148gkylxpfmmk9pmh3gblc4wp6594n0w4a711xrv1jr9"; depends=[checkmate data_table DESeq2 edgeR GenomicRanges S4Vectors SummarizedExperiment]; }; + DEGraph = derive2 { name="DEGraph"; version="1.56.0"; sha256="0pxh6kyi4blz039yw7vzi9dj4jpzsbv0p2fw44fz2q2pzr98g2m9"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; }; + DEGreport = derive2 { name="DEGreport"; version="1.40.0"; sha256="087c7x3vz8z3yz4jdwbcskdqmv3kgz4c4vi3r9gvvay5z36yhpl5"; depends=[Biobase BiocGenerics broom circlize cluster ComplexHeatmap ConsensusClusterPlus cowplot dendextend DESeq2 dplyr edgeR ggdendro ggplot2 ggrepel knitr logging magrittr psych RColorBrewer reshape rlang S4Vectors scales stringi stringr SummarizedExperiment tibble tidyr]; }; + DEGseq = derive2 { name="DEGseq"; version="1.58.0"; sha256="1ia2fkd1v0f8mlfrpdv3h0n34y5pg1s8xqf1w5rcmh2md4icm670"; depends=[qvalue]; }; + DELocal = derive2 { name="DELocal"; version="1.4.0"; sha256="0xxlf90h1zi97k5rsbv41l88yq7qgfmd1rrmyipfjzhbl3l2spaf"; depends=[DESeq2 dplyr ggplot2 limma matrixStats reshape2 SummarizedExperiment]; }; + DEP = derive2 { name="DEP"; version="1.26.0"; sha256="1z8ymvghbbr9igcdzqwaz62r8lk07c2b1gnjbk504cxrhyy301jx"; depends=[assertthat circlize cluster ComplexHeatmap dplyr DT fdrtool ggplot2 ggrepel gridExtra imputeLCMD limma MSnbase purrr RColorBrewer readr rmarkdown shiny shinydashboard SummarizedExperiment tibble tidyr vsn]; }; + DEScan2 = derive2 { name="DEScan2"; version="1.24.0"; sha256="15ncl95mf7mxazic0ig15isnblyj59dcr2xjv05dcwxc11wz1fr0"; depends=[BiocGenerics BiocParallel ChIPpeakAnno data_table DelayedArray GenomeInfoDb GenomicAlignments GenomicRanges glue IRanges plyr Rcpp RcppArmadillo rtracklayer S4Vectors SummarizedExperiment]; }; + DESeq2 = derive2 { name="DESeq2"; version="1.44.0"; sha256="1j7ivkxbc75hzxhl9d97w8vamrmxf6527n7841i1j9n6s7hz1cdn"; depends=[Biobase BiocGenerics BiocParallel GenomicRanges ggplot2 IRanges locfit MatrixGenerics matrixStats Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; }; + DESpace = derive2 { name="DESpace"; version="1.4.0"; sha256="0lx3igbclpxx6jjvsagwjdakg9iy325xhkw7iixj8m6b8s4dkmkp"; depends=[assertthat BiocGenerics BiocParallel cowplot data_table dplyr edgeR ggforce ggnewscale ggplot2 ggpubr limma Matrix patchwork S4Vectors scales SpatialExperiment SummarizedExperiment]; }; + DEWSeq = derive2 { name="DEWSeq"; version="1.18.0"; sha256="034p1rxc1w758zpy920sgpcfr0dmhkfqrcximqkary0n0m6n95i0"; depends=[BiocGenerics BiocParallel data_table DESeq2 GenomeInfoDb GenomicRanges R_utils S4Vectors SummarizedExperiment]; }; + DEXSeq = derive2 { name="DEXSeq"; version="1.50.0"; sha256="13y3fhgvf7438yjv6qm28n8f42w4wgkklc0q229ypns1gfh54524"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools S4Vectors statmod stringr SummarizedExperiment]; }; + DEqMS = derive2 { name="DEqMS"; version="1.22.0"; sha256="0fiiyrzvy6nkk8xpxdjmar0fpjs9ardzplb993xxyi1n8vv0092l"; depends=[ggplot2 limma matrixStats]; }; + DEsingle = derive2 { name="DEsingle"; version="1.24.0"; sha256="06bnvyivj4bx5l2zvwjj4za2hpshsifsa83lsi9fpgdwhn3526kd"; depends=[bbmle BiocParallel gamlss MASS Matrix maxLik pscl VGAM]; }; + DEsubs = derive2 { name="DEsubs"; version="1.30.0"; sha256="0p3vkm6116zl157nivwnm68svwm9h9cp9cplz9hncfywcii9a579"; depends=[circlize DESeq2 EBSeq edgeR ggplot2 graph igraph jsonlite limma locfit Matrix NBPSeq pheatmap RBGL]; }; + DExMA = derive2 { name="DExMA"; version="1.12.0"; sha256="1mm45hvb3l1xvikgy25jxg9ppl71ha2sn4vh9qpf7wfr770hif3r"; depends=[Biobase bnstruct DExMAdata GEOquery impute limma pheatmap plyr RColorBrewer scales snpStats sva swamp]; }; + DFP = derive2 { name="DFP"; version="1.62.0"; sha256="1rjc8a03pga0hyb663lnfkwrwfw3pipwsb11gn2aj3vx4wyf1gp1"; depends=[Biobase]; }; + DIAlignR = derive2 { name="DIAlignR"; version="2.12.0"; sha256="19zgjnd9sjxx09pcf50fl3w4fmd1gj8g765x114l0cqcpk9qfmm5"; depends=[ape bit64 data_table DBI dplyr ggplot2 magrittr mzR phangorn pracma Rcpp RcppEigen reticulate rlang RMSNumpress RSQLite signal tidyr zoo]; }; + DMCFB = derive2 { name="DMCFB"; version="1.18.0"; sha256="0hpf7qkjy7hms4bpqb6y15gwkfah6p69icwab2vwsgmz8w94c44a"; depends=[arm benchmarkme BiocParallel data_table fastDummies GenomicRanges IRanges MASS matrixStats rtracklayer S4Vectors speedglm SummarizedExperiment tibble]; }; + DMCHMM = derive2 { name="DMCHMM"; version="1.26.0"; sha256="0rv1v08nf7vbxci28j68sjxq77lj0swis26ryxp156alr397jfby"; depends=[BiocParallel calibrate fdrtool GenomicRanges IRanges multcomp rtracklayer S4Vectors SummarizedExperiment]; }; + DMRScan = derive2 { name="DMRScan"; version="1.26.0"; sha256="0j68kxzmn3kskqy88j1dqznigiw1rb3b14hwnvcmyckmyhiysx73"; depends=[GenomeInfoDb GenomicRanges IRanges MASS Matrix mvtnorm RcppRoll]; }; + DMRcaller = derive2 { name="DMRcaller"; version="1.36.0"; sha256="0r9xm77y6xs4mginwfshnpvn2l8phpag35a8mcasj63aqs05js2h"; depends=[betareg GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; }; + DMRcate = derive2 { name="DMRcate"; version="3.0.1"; sha256="091bj5dkcqci032x01cnzryjjy5cw6l4cci9mlll0bm2g4l4k7p5"; depends=[AnnotationHub biomaRt bsseq edgeR ExperimentHub GenomeInfoDb GenomicRanges Gviz IRanges limma minfi missMethyl plyr S4Vectors SummarizedExperiment]; }; + DNABarcodeCompatibility = derive2 { name="DNABarcodeCompatibility"; version="1.20.0"; sha256="0iiy81svi1nnghaimnc5hs1prrk1z5kgv1bd5naysb8fpagd0jgl"; depends=[DNABarcodes dplyr numbers purrr stringr tidyr]; }; + DNABarcodes = derive2 { name="DNABarcodes"; version="1.34.0"; sha256="0vxxg6fkgck640p9plk4vx3d05794s3xgxksv819d2wicvyby4hk"; depends=[BH Matrix Rcpp]; }; + DNAcopy = derive2 { name="DNAcopy"; version="1.78.0"; sha256="1q4s6rb6iv9cmfkjymgdyb4h3z0x0kzzd2bvfdjrzzzza6vhjpxl"; depends=[]; }; + DNAfusion = derive2 { name="DNAfusion"; version="1.6.0"; sha256="1rdm6x8dzk02ggx33bx9mgcq1p36ryysyxha333j05aysn2az2x0"; depends=[bamsignals BiocBaseUtils BiocGenerics GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools S4Vectors TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + DNAshapeR = derive2 { name="DNAshapeR"; version="1.32.0"; sha256="0s5z3bh5dlym810rkb9i3bfxfap91qh7hj070i1nqnf4g2vamx9g"; depends=[Biostrings fields GenomicRanges Rcpp]; }; + DOSE = derive2 { name="DOSE"; version="3.30.1"; sha256="1kyrr1xxcif45ynyq4wsv2247bjily5sgzn17m1g3ypw2hkqcj53"; depends=[AnnotationDbi BiocParallel fgsea ggplot2 GOSemSim HDO_db qvalue reshape2 yulab_utils]; }; + DRIMSeq = derive2 { name="DRIMSeq"; version="1.32.0"; sha256="10skx3n3r9vp1p1499ddccgabi7q3cy1dpi5pbp4ap0gff5ika5x"; depends=[BiocGenerics BiocParallel edgeR GenomicRanges ggplot2 IRanges limma MASS reshape2 S4Vectors]; }; + DSS = derive2 { name="DSS"; version="2.52.0"; sha256="1y9xg6ic3a03xswyfvyxdhnd7ngkljc96bm5fry4ni6kpa77bkv8"; depends=[Biobase BiocParallel bsseq]; }; + DTA = derive2 { name="DTA"; version="2.50.0"; sha256="0njm0v10s31sx7v35kdv44815yy6k9h814s9zn98ld5qcrzn2q77"; depends=[LSD scatterplot3d]; }; + DaMiRseq = derive2 { name="DaMiRseq"; version="2.16.0"; sha256="029idkjbha250f8wgwy6sjnjvlxqs0lkwal066693mc2h40rql11"; depends=[arm caret corrplot DESeq2 e1071 EDASeq edgeR FactoMineR FSelector ggplot2 Hmisc ineq kknn limma lubridate MASS pheatmap pls plsVarSel plyr randomForest RColorBrewer reshape2 RSNNS SummarizedExperiment sva]; }; + Damsel = derive2 { name="Damsel"; version="1.0.0"; sha256="0n60wkrwk1npg1361x5plam6rabmqzlxdcij1qf5q351wfkqlp8y"; depends=[AnnotationDbi Biostrings dplyr edgeR GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 goseq magrittr patchwork plyranges reshape2 rlang Rsamtools Rsubread stringr tidyr]; }; + DeMAND = derive2 { name="DeMAND"; version="1.34.0"; sha256="0pdqgb4fsqzwhan1hwb4hi326yh5xhxwqkdqlffzhgfkp4lwi1cb"; depends=[KernSmooth]; }; + DeMixT = derive2 { name="DeMixT"; version="1.20.0"; sha256="1hnaaidmflyh768pc1ivlq8rfjh5vrwycc0r6k1cyiinm53vknns"; depends=[base64enc dendextend DSS ggplot2 KernSmooth knitr matrixcalc matrixStats psych Rcpp rmarkdown SummarizedExperiment sva truncdist]; }; + DeProViR = derive2 { name="DeProViR"; version="1.0.0"; sha256="0m1nhzq5kl6jyi3d8fzb77iplzc4p85v7lj5q7i7125kjv6bycsm"; depends=[BiocFileCache caret data_table dplyr fmsb ggplot2 keras pROC PRROC readr]; }; + DeconRNASeq = derive2 { name="DeconRNASeq"; version="1.46.0"; sha256="0hwvfsc48dakh3nvz60i92yciz2m5my9w57kzpyj4jyk92cs181g"; depends=[ggplot2 limSolve pcaMethods]; }; + DeepPINCS = derive2 { name="DeepPINCS"; version="1.12.0"; sha256="148klzaqa01yns02x38vnd3gn46ayi7p0z2f2s7m95ralby95qm0"; depends=[CatEncoders keras matlab PRROC purrr rcdk reticulate stringdist tensorflow tokenizers ttgsea webchem]; }; + DegCre = derive2 { name="DegCre"; version="1.0.0"; sha256="1wv2h8x45qsj8p4awwb22z1ilymmkrgmrhsl2y7l7dx13qh5l3dr"; depends=[BiocGenerics GenomeInfoDb GenomicRanges InteractionSet IRanges plotgardener S4Vectors]; }; + DegNorm = derive2 { name="DegNorm"; version="1.14.0"; sha256="15bh4x6rnqil3gcwialcpnqq5inznmjhzf0f4r54xylril0ad268"; depends=[data_table doParallel foreach GenomicAlignments GenomicFeatures GenomicRanges ggplot2 heatmaply IRanges plotly plyr Rcpp RcppArmadillo Rsamtools S4Vectors txdbmaker viridis]; }; + DelayedArray = derive2 { name="DelayedArray"; version="0.30.1"; sha256="0n6pparz2fg8wgrgcwciibqz3iyrnlmk5hdvnzjppcraxanz8sm6"; depends=[BiocGenerics IRanges Matrix MatrixGenerics S4Arrays S4Vectors SparseArray]; }; + DelayedDataFrame = derive2 { name="DelayedDataFrame"; version="1.20.0"; sha256="1j9akl3njqnrf6klccgiiss941l1k49vsrsrhrqjbg8f5vzg5i9w"; depends=[BiocGenerics DelayedArray S4Vectors]; }; + DelayedMatrixStats = derive2 { name="DelayedMatrixStats"; version="1.26.0"; sha256="1cqf6y0f18469v1jgfvdjnskkc89i3sfg79axxqcwa33mfjj736s"; depends=[DelayedArray IRanges Matrix MatrixGenerics S4Vectors sparseMatrixStats]; }; + DelayedRandomArray = derive2 { name="DelayedRandomArray"; version="1.12.0"; sha256="0lzx0p9hq4vd6w1rvlqd98b3rvfs1zzgvqm21s99vlmdc3db5pqn"; depends=[BH DelayedArray dqrng Rcpp]; }; + DelayedTensor = derive2 { name="DelayedTensor"; version="1.10.0"; sha256="1f8qpi3xfhgng7zjm7zdxmd32ynri2mavxs6ffqg1izclrzqsb5q"; depends=[BiocSingular DelayedArray DelayedRandomArray einsum HDF5Array irlba Matrix rTensor]; }; + DepInfeR = derive2 { name="DepInfeR"; version="1.8.0"; sha256="0akyxyijjp4hwy1cs00nnahcnsbrp5j6gnrahwd2wrlx2dr0zxrm"; depends=[BiocParallel glmnet matrixStats]; }; + DepecheR = derive2 { name="DepecheR"; version="1.20.0"; sha256="15lpn1p2p28lhmzi7svszr0p1zkyaivi69q8pxcrv4lvips38hk4"; depends=[beanplot ClusterR collapse doSNOW dplyr FNN foreach ggplot2 gmodels gplots MASS matrixStats mixOmics moments Rcpp RcppEigen reshape2 robustbase viridis]; }; + DiffBind = derive2 { name="DiffBind"; version="3.14.0"; sha256="1sr0zy5pbjmjzkwkpjmr26k4dcf3f3kxsl7z2nqw0p0a14rh57pm"; depends=[amap apeglm ashr BiocParallel DESeq2 dplyr GenomicAlignments GenomicRanges ggplot2 ggrepel gplots GreyListChIP IRanges lattice limma locfit RColorBrewer Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment systemPipeR]; }; + DiffLogo = derive2 { name="DiffLogo"; version="2.28.0"; sha256="00c75krimzaf8z35dyr9dq7vrh06ihb8fikyd61kybaakz6c4waj"; depends=[cba]; }; + DifferentialRegulation = derive2 { name="DifferentialRegulation"; version="2.2.0"; sha256="105jwyiqz3z12q4vmrsmw5d8j8w0s5prfa0l8z68jj36g8rxbl21"; depends=[BANDITS data_table doParallel doRNG foreach ggplot2 gridExtra MASS Matrix Rcpp RcppArmadillo SingleCellExperiment SummarizedExperiment tximport]; }; + Dino = derive2 { name="Dino"; version="1.10.0"; sha256="0nfn61i6iczg3k8brfajddlxavskjzm0x56qliy81f76sjb3njr3"; depends=[BiocParallel BiocSingular Matrix matrixStats S4Vectors scran Seurat SingleCellExperiment SummarizedExperiment]; }; + Director = derive2 { name="Director"; version="1.30.0"; sha256="1lm6qdmk1a4c74sph9n4vj174x9c41489ljrw7hxwrwifpjp4phd"; depends=[htmltools]; }; + DirichletMultinomial = derive2 { name="DirichletMultinomial"; version="1.46.0"; sha256="0djd84vnf4skjr6m25ykqrvwa37lgs5r5aw9md81ykaqmi40szqb"; depends=[BiocGenerics IRanges S4Vectors]; }; + DiscoRhythm = derive2 { name="DiscoRhythm"; version="1.20.0"; sha256="14scrzsx36j6rbnav5hn8xykhwyswr85kkvdvg66g4xdwc3d6v7b"; depends=[BiocGenerics BiocStyle broom data_table dplyr DT ggExtra ggplot2 gridExtra heatmaply kableExtra knitr magick matrixStats matrixTests MetaCycle plotly reshape2 rmarkdown S4Vectors shiny shinyBS shinycssloaders shinydashboard shinyjs SummarizedExperiment UpSetR VennDiagram viridis zip]; }; + DominoEffect = derive2 { name="DominoEffect"; version="1.24.0"; sha256="1lwvji698xi63rx4i3g73xkv4k53m3gbjgkbcmxgm0gagn1mrczl"; depends=[AnnotationDbi biomaRt Biostrings data_table GenomeInfoDb GenomicRanges IRanges pwalign SummarizedExperiment VariantAnnotation]; }; + Doscheda = derive2 { name="Doscheda"; version="1.26.0"; sha256="0iqcsyk4y8wkhf9s84hzm4rdmyg7bb5db7frm6xbxlsydfpzqy3l"; depends=[affy calibrate corrgram drc DT ggplot2 gridExtra httr jsonlite limma matrixStats prodlim readxl reshape2 shiny shinydashboard stringr vsn]; }; + DriverNet = derive2 { name="DriverNet"; version="1.44.0"; sha256="0jj9vrbni8zc56pbs2c7nv6yks23nrwzqz757vb7a8lxcd3sziwr"; depends=[]; }; + DropletUtils = derive2 { name="DropletUtils"; version="1.24.0"; sha256="01y88cnii02sn1jgyvvmbx8j60qbzqyznqfxzv06yi4y0xj37klg"; depends=[beachmat BH BiocGenerics BiocParallel DelayedArray DelayedMatrixStats dqrng edgeR GenomicRanges HDF5Array IRanges Matrix R_utils Rcpp rhdf5 Rhdf5lib S4Vectors scuttle SingleCellExperiment SummarizedExperiment]; }; + DrugVsDisease = derive2 { name="DrugVsDisease"; version="2.46.0"; sha256="1bzjjvv94hiyh7m0iqrvgl6lgxzz6s8jy5ry1mj2w821ivhz1gpy"; depends=[affy annotate ArrayExpress BiocGenerics biomaRt cMap2data DrugVsDiseasedata GEOquery hgu133a_db hgu133a2_db hgu133plus2_db limma qvalue RUnit xtable]; }; + Dune = derive2 { name="Dune"; version="1.16.0"; sha256="0fiqbh9ywip75sxy54y76nbbqg6maji40d189qxarckdlmj09m7z"; depends=[aricode BiocParallel dplyr gganimate ggplot2 magrittr purrr RColorBrewer SummarizedExperiment tidyr]; }; + DynDoc = derive2 { name="DynDoc"; version="1.82.0"; sha256="174jfdyq7g7mvn7wvmdkf36n0n969aqsg9bwd1nk6a5nw1khm7js"; depends=[]; }; + EBImage = derive2 { name="EBImage"; version="4.46.0"; sha256="0qaafn9l9lwrj0yph74g39pghjpg009qz7by64frxg1q0j7ksd2w"; depends=[abind BiocGenerics fftwtools htmltools htmlwidgets jpeg locfit png RCurl tiff]; }; + EBSEA = derive2 { name="EBSEA"; version="1.32.0"; sha256="1pms8d49pcr4ngcy79m556vh4h2xbscwkzcabvy5xr8l22biv84b"; depends=[DESeq2 EmpiricalBrownsMethod]; }; + EBSeq = derive2 { name="EBSeq"; version="2.2.0"; sha256="1lbvrw6fcjhrm6v71lmnphv4hbdh03czgx3822ckdk6xrvyh54cf"; depends=[BH blockmodeling gplots Rcpp RcppEigen testthat]; }; + EBarrays = derive2 { name="EBarrays"; version="2.68.0"; sha256="17ym1y90bz85afanggdjf91a49lz89qmmi2kyhxga0cw056lkdz0"; depends=[Biobase cluster lattice]; }; + EBcoexpress = derive2 { name="EBcoexpress"; version="1.48.0"; sha256="0sfakxc2zz38w6krss8jqzkpvpmg8pj6xxc24775jhndv3aqjih1"; depends=[EBarrays mclust minqa]; }; + EDASeq = derive2 { name="EDASeq"; version="2.38.0"; sha256="18h9zlah21lghy1sjpnzy6lddmff8vh3raxnqi15v00za9azk8yq"; depends=[AnnotationDbi aroma_light Biobase BiocGenerics BiocManager biomaRt Biostrings GenomicFeatures GenomicRanges IRanges Rsamtools ShortRead]; }; + EDIRquery = derive2 { name="EDIRquery"; version="1.4.0"; sha256="154bnyjlvds909y95rmbd8x32rkhqfpkhb6vjbqhm56z4c9z33x7"; depends=[GenomicRanges InteractionSet readr tibble tictoc]; }; + EGAD = derive2 { name="EGAD"; version="1.32.0"; sha256="0y1fwvqmrvv8v7i8ncqaxbmpflaybbgnjn09qqzpmsavfk10wvgh"; depends=[Biobase GEOquery gplots igraph impute limma MASS plyr RColorBrewer RCurl zoo]; }; + EGSEA = derive2 { name="EGSEA"; version="1.32.0"; sha256="1fpa26l0jimy1b36cw71abgmn1zj10j4lkpc5g4k09kc74nmivqi"; depends=[AnnotationDbi Biobase DT edgeR EGSEAdata gage ggplot2 globaltest gplots GSVA HTMLUtils htmlwidgets hwriter limma metap org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db PADOG pathview plotly RColorBrewer safe stringi topGO]; }; + ELMER = derive2 { name="ELMER"; version="2.28.0"; sha256="012vxjagm3m9v98ds89xfwncnxzhwqlk7yigadnw73vg5r8ix6zd"; depends=[biomaRt circlize ComplexHeatmap DelayedArray doParallel downloader dplyr ELMER_data GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel gridExtra Gviz IRanges lattice magrittr Matrix MultiAssayExperiment plotly plyr progress purrr readr reshape reshape2 rmarkdown rtracklayer rvest S4Vectors scales stringr SummarizedExperiment TCGAbiolinks tibble tidyr xml2]; }; + EMDomics = derive2 { name="EMDomics"; version="2.34.0"; sha256="0lyaia1ngsw909avldz1pmly16v36ldqq1r7jz23fzmqa63ch87r"; depends=[BiocParallel CDFt emdist ggplot2 matrixStats preprocessCore]; }; + ENmix = derive2 { name="ENmix"; version="1.40.1"; sha256="1f41wvj1c78kkdrzp8dv5mfjfrjqpd32sp6lhh5mii1lvjb77ycc"; depends=[AnnotationHub Biobase doParallel dynamicTreeCut ExperimentHub foreach genefilter geneplotter gplots gtools illuminaio impute IRanges irlba matrixStats minfi quadprog RPMM S4Vectors SummarizedExperiment]; }; + ERSSA = derive2 { name="ERSSA"; version="1.22.0"; sha256="1bm64ydz0qlfm6vdrhqr699sc0njm6npdq0pmh2xb3w6iwh9dy92"; depends=[apeglm BiocParallel DESeq2 edgeR ggplot2 plyr RColorBrewer]; }; + EWCE = derive2 { name="EWCE"; version="1.12.0"; sha256="19j1bl179kcih54ry9m4pgl9qvylkxyjaqk6pzna9wm5dpzdqnsl"; depends=[BiocParallel data_table DelayedArray dplyr ewceData ggplot2 HGNChelper limma Matrix orthogene reshape2 RNOmni SingleCellExperiment stringr SummarizedExperiment]; }; + EasyCellType = derive2 { name="EasyCellType"; version="1.6.0"; sha256="0czz6yy7534xzfr28kp18hy47sdzsfkzpd9hz1jx5rfgl4sg6hbn"; depends=[AnnotationDbi BiocStyle clusterProfiler dplyr forcats ggplot2 magrittr org_Hs_eg_db org_Mm_eg_db rlang vctrs]; }; + EmpiricalBrownsMethod = derive2 { name="EmpiricalBrownsMethod"; version="1.32.0"; sha256="1r34sj45liw2ya6842c4fxnph6kax712f8mqr0flvcy2k7g45ccn"; depends=[]; }; + EnMCB = derive2 { name="EnMCB"; version="1.16.0"; sha256="1m3d92abl2qdkd82wnf6imx9xgxi4w94wiy84vnwn9g3r9kxl1p2"; depends=[BiocFileCache boot e1071 ggplot2 glmnet igraph Matrix mboost rms survival survivalROC survivalsvm]; }; + EnhancedVolcano = derive2 { name="EnhancedVolcano"; version="1.22.0"; sha256="0ry5r74d6m5x15b4azw93mjrvq4fapj4rxpi9f6macz4l5l6j1j0"; depends=[ggplot2 ggrepel]; }; + EnrichedHeatmap = derive2 { name="EnrichedHeatmap"; version="1.34.0"; sha256="0fmqz9xqs1108a5xxpsc63pplcc0i742r4zdk46p68my28ba2xfq"; depends=[circlize ComplexHeatmap GenomicRanges GetoptLong IRanges locfit matrixStats Rcpp]; }; + EnrichmentBrowser = derive2 { name="EnrichmentBrowser"; version="2.34.1"; sha256="1drmdr1z2fyyf566vv5arkbwpfkwxajh555nasnkbnpqdrq3b93q"; depends=[AnnotationDbi BiocFileCache BiocManager edgeR GO_db graph graphite GSEABase hwriter KEGGgraph KEGGREST limma pathview Rgraphviz S4Vectors safe SPIA SummarizedExperiment]; }; + EpiDISH = derive2 { name="EpiDISH"; version="2.20.0"; sha256="17qkm5inavfdfrim9baqxdhs3w64c6y94qadw4y5p9xsck318frq"; depends=[e1071 locfdr MASS Matrix matrixStats quadprog stringr]; }; + EpiMix = derive2 { name="EpiMix"; version="1.6.1"; sha256="1m8mlxhci56d4d1iingwj8ddmddpm02an8dhh6m4ka4vpg7q51as"; depends=[AnnotationDbi AnnotationHub Biobase biomaRt data_table doParallel doSNOW downloader dplyr ELMER_data EpiMix_data ExperimentHub foreach GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 impute IRanges limma plyr progress R_matlab RColorBrewer RCurl rlang RPMM S4Vectors SummarizedExperiment tibble tidyr]; }; + EpiTxDb = derive2 { name="EpiTxDb"; version="1.16.0"; sha256="11f2a9qhbl605mzj6z673j0hlgd3a80c2qigkcw9q81745rd5lrg"; depends=[AnnotationDbi BiocFileCache BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges httr IRanges Modstrings rex RSQLite S4Vectors tRNAdbImport txdbmaker xml2]; }; + EventPointer = derive2 { name="EventPointer"; version="3.12.0"; sha256="1d13s9pww3kjdm0nfnz598jng9vl66jl6y52rczdcflxikfgip0i"; depends=[abind affxparser Biostrings BSgenome cobs doParallel fgsea foreach GenomeInfoDb GenomicFeatures GenomicRanges glmnet graph igraph IRanges iterators limma lpSolve MASS Matrix matrixStats nnls poibin prodlim qvalue RBGL rhdf5 S4Vectors SGSeq speedglm stringr SummarizedExperiment tximport]; }; + ExCluster = derive2 { name="ExCluster"; version="1.22.0"; sha256="1drpwz9pba4w36sbp53jrlmwbzr68fysrzqa06qb5347sxl94ac1"; depends=[GenomicRanges IRanges matrixStats Rsubread rtracklayer]; }; + ExiMiR = derive2 { name="ExiMiR"; version="2.46.0"; sha256="01bdi0d9afwyndfcjkaand4qpmbx6i437183s9g16i13vzwh1wk4"; depends=[affy affyio Biobase limma preprocessCore]; }; + ExperimentHub = derive2 { name="ExperimentHub"; version="2.12.0"; sha256="0mj1aqxyp84mn5m0fwk9lijysy594hhga3kv4mddv45vqxdsr08h"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocManager rappdirs S4Vectors]; }; + ExperimentHubData = derive2 { name="ExperimentHubData"; version="1.30.0"; sha256="1adm3b0nacbdi4x5z71iiif9d876m3ip6crhbbr2hw4mbk6is7qn"; depends=[AnnotationHubData BiocGenerics BiocManager curl DBI ExperimentHub httr S4Vectors]; }; + ExperimentSubset = derive2 { name="ExperimentSubset"; version="1.14.0"; sha256="0san9jjdgx9m5cl2pdn17v6j6vd865jr80r4258fifywr7yqdnm1"; depends=[Matrix S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment TreeSummarizedExperiment]; }; + ExploreModelMatrix = derive2 { name="ExploreModelMatrix"; version="1.16.0"; sha256="01ys9p7q3pmz7qfw1ggppchqq8yzrjsd91fa1r6h3a2rz8azdi2g"; depends=[cowplot dplyr DT ggplot2 limma magrittr MASS rintrojs S4Vectors scales shiny shinydashboard shinyjs tibble tidyr]; }; + ExpressionAtlas = derive2 { name="ExpressionAtlas"; version="1.32.0"; sha256="1plxw5jf2lpa8away57nr1jch14d3lz0f33sjv958kyqzhar7zml"; depends=[Biobase BiocStyle httr jsonlite limma RCurl S4Vectors SummarizedExperiment XML xml2]; }; + FEAST = derive2 { name="FEAST"; version="1.12.0"; sha256="0w6pkq3lc9l42fnwa35lcnbw52ylbjs65w6dsh2k5wcgs0jig8rp"; depends=[BiocParallel irlba matrixStats mclust SC3 SingleCellExperiment SummarizedExperiment TSCAN]; }; + FELLA = derive2 { name="FELLA"; version="1.24.0"; sha256="1rbb5lfz7maicw0hx5sd1jg9rqxlcmv6bfyakp4ics9azxwk899i"; depends=[igraph KEGGREST Matrix plyr]; }; + FGNet = derive2 { name="FGNet"; version="3.38.0"; sha256="128dc1mhqj0vxqcivra79k0c8jwr9zcrcwzkkr69czzv5i7szw8d"; depends=[hwriter igraph plotrix png R_utils RColorBrewer reshape2 XML]; }; + FISHalyseR = derive2 { name="FISHalyseR"; version="1.38.0"; sha256="1f3iv48l2wbx8izn0z0lnk2k8ssm6bj6ai02kd5ww5kk7gqg6ka7"; depends=[abind EBImage]; }; + FLAMES = derive2 { name="FLAMES"; version="1.10.0"; sha256="1fcz0v1vy0q5zmdpawlk4a7fbqd01954p0jby9nbzgbk85hl16mi"; depends=[bambu basilisk BiocGenerics Biostrings circlize ComplexHeatmap cowplot dplyr DropletUtils future GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 gridExtra igraph IRanges jsonlite magrittr Matrix MultiAssayExperiment RColorBrewer Rcpp reticulate Rhtslib Rsamtools rtracklayer S4Vectors scater scran scuttle SingleCellExperiment stringr SummarizedExperiment testthat tibble tidyr tidyselect txdbmaker withr zlibbioc]; }; + FRASER = derive2 { name="FRASER"; version="2.0.0"; sha256="0q36p80ff0hq37ddjpx6czkllpmlkj00h6fq32hbmr9cyh3rz2d8"; depends=[AnnotationDbi BBmisc Biobase BiocGenerics BiocParallel biomaRt BSgenome cowplot data_table DelayedArray DelayedMatrixStats extraDistr generics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel HDF5Array IRanges matrixStats OUTRIDER pcaMethods pheatmap plotly PRROC R_utils RColorBrewer Rcpp RcppArmadillo rhdf5 Rsamtools Rsubread S4Vectors SummarizedExperiment tibble VGAM]; }; + FRGEpistasis = derive2 { name="FRGEpistasis"; version="1.40.0"; sha256="0fpph9rrkakaxah4f8bcbny4yd8w4zp38666ff8mrvvlzx5fn313"; depends=[fda MASS]; }; + FamAgg = derive2 { name="FamAgg"; version="1.32.0"; sha256="0qcd028bamdj4v24rdqymk2zc02kj7yc8p1q19vvzk8h1hxvh98l"; depends=[BiocGenerics gap igraph kinship2 Matrix survey]; }; + FastqCleaner = derive2 { name="FastqCleaner"; version="1.22.0"; sha256="0bwbg3b8w27whbg8gl2ga58fwm95cyra45f2y609izrx9vjz7dcr"; depends=[Biostrings DT htmltools IRanges Rcpp S4Vectors shiny shinyBS ShortRead]; }; + FeatSeekR = derive2 { name="FeatSeekR"; version="1.4.0"; sha256="0r72wl0wjzfvh8wmpn6ppffsh6yrydkyni1pbxsw865j5rkiiyqd"; depends=[MASS pheatmap pracma SummarizedExperiment]; }; + FilterFFPE = derive2 { name="FilterFFPE"; version="1.14.0"; sha256="1pjks7wadlyyhaz9lcrhxamjqjaq0nnyxkv6jxb4adrh5hwvgxfx"; depends=[doParallel foreach GenomicRanges IRanges Rsamtools S4Vectors]; }; + FindIT2 = derive2 { name="FindIT2"; version="1.10.0"; sha256="03bfmxln17lnvzmmsc3g64nk1vs6fg4bphlszqgxhdxwbjjg4nf2"; depends=[BiocGenerics BiocParallel dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel glmnet IRanges MultiAssayExperiment patchwork progress purrr qvalue rlang rtracklayer S4Vectors stringr SummarizedExperiment tibble tidyr withr]; }; + FitHiC = derive2 { name="FitHiC"; version="1.30.0"; sha256="107hm9k9wfr34fradldmjym2bzxb6qx8109p4a7xrqkiya0hmwwa"; depends=[data_table fdrtool Rcpp]; }; + FlowSOM = derive2 { name="FlowSOM"; version="2.12.0"; sha256="0xqrp184p00pvzzf6ddmp2r8lpg97bm0q6smjwcrfb8rn4msxmis"; depends=[BiocGenerics colorRamps ConsensusClusterPlus dplyr flowCore ggforce ggnewscale ggplot2 ggpubr igraph magrittr rlang Rtsne tidyr XML]; }; + FuseSOM = derive2 { name="FuseSOM"; version="1.6.0"; sha256="1qbk2rdc7fdhkglwzhsyrysb51qwjsyjy9m6pgbbcwi14iwwhnf2"; depends=[analogue cluster coop diptest fastcluster FCPS fpc ggplot2 ggplotify ggpubr pheatmap proxy psych Rcpp S4Vectors stringr SummarizedExperiment]; }; + GA4GHclient = derive2 { name="GA4GHclient"; version="1.28.0"; sha256="1x5k9l2f4fw5da1aacwd0b7rn9kjpbzf8vl9h76n4d92fdh25jlh"; depends=[BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges httr IRanges jsonlite S4Vectors VariantAnnotation]; }; + GA4GHshiny = derive2 { name="GA4GHshiny"; version="1.26.0"; sha256="1vj0p1akcgzq2q43yir0g2klggjw8970chhzibw7yb5qxr2fz9ai"; depends=[AnnotationDbi BiocGenerics dplyr DT GA4GHclient GenomeInfoDb GenomicFeatures openxlsx purrr S4Vectors shiny shinyjs shinythemes tidyr]; }; + GARS = derive2 { name="GARS"; version="1.24.0"; sha256="1wi56b6h1fi1rr4hrpbby6iwgax36q01h6hr2nm4bgb7cx6l3bii"; depends=[cluster DaMiRseq ggplot2 MLSeq SummarizedExperiment]; }; + GAprediction = derive2 { name="GAprediction"; version="1.30.0"; sha256="0p38ivjzp0nsyr85a323xgjwb2amsmvr10ajq9m51z9acl4jzakx"; depends=[glmnet Matrix]; }; + GBScleanR = derive2 { name="GBScleanR"; version="1.8.18"; sha256="1il1h9njfvhi4kxn30bhc31nkmr91b9imfafq68ccz947ckzhkpm"; depends=[expm gdsfmt ggplot2 Rcpp RcppParallel SeqArray tidyr]; }; + GDCRNATools = derive2 { name="GDCRNATools"; version="1.24.0"; sha256="1grhgzl08f2infvvpd5084mvplvgqb0qa7d6afrfv6n5wigwnvbv"; depends=[BiocParallel biomaRt clusterProfiler DESeq2 DOSE DT edgeR GenomicDataCommons ggplot2 gplots jsonlite limma org_Hs_eg_db pathview rjson shiny survival survminer XML]; }; + GDSArray = derive2 { name="GDSArray"; version="1.24.0"; sha256="0s78y646vr1m2lcsg91yy5xzc328hfbx0lnzyfg9pavp0d12yzip"; depends=[BiocGenerics DelayedArray gdsfmt S4Vectors SeqArray SNPRelate]; }; + GEM = derive2 { name="GEM"; version="1.30.0"; sha256="1idp44h5szwwradv6i4bkgy055gaa04d5sxrv0r683h717pqagh5"; depends=[ggplot2]; }; + GENESIS = derive2 { name="GENESIS"; version="2.34.0"; sha256="1jk0mw183v2nxabx58kwm8fwm6r2ikbc90ilxdmivfsxc7gx534r"; depends=[Biobase BiocGenerics BiocParallel data_table gdsfmt GenomicRanges GWASTools igraph IRanges Matrix reshape2 S4Vectors SeqArray SeqVarTools SNPRelate]; }; + GENIE3 = derive2 { name="GENIE3"; version="1.26.0"; sha256="0ijwyx42saqas52273c63c3yi948bh4pd4lifyqi3zjjs17bj1cg"; depends=[dplyr reshape2]; }; + GEOexplorer = derive2 { name="GEOexplorer"; version="1.10.0"; sha256="0hb9hgkb5nc2mdri18y22s4qi5hdp3zclmpdz2q7hdvqhqg6kqzv"; depends=[Biobase car DT edgeR enrichR factoextra GEOquery ggplot2 heatmaply htmltools httr impute knitr limma markdown pheatmap plotly R_utils readxl scales shiny shinybusy shinycssloaders shinyHeatmaply stringr sva umap xfun XML xml2]; }; + GEOfastq = derive2 { name="GEOfastq"; version="1.12.0"; sha256="18wi24a6j04fflank3rw4z852j21zarca0by7g5kwq1ym2dy2xld"; depends=[doParallel foreach plyr RCurl rvest stringr xml2]; }; + GEOmetadb = derive2 { name="GEOmetadb"; version="1.66.0"; sha256="0yafdqcwkyv3sc3wcfbpciy04vqciqjfihsf0gyfcza75gjkqy0w"; depends=[GEOquery RSQLite]; }; + GEOquery = derive2 { name="GEOquery"; version="2.72.0"; sha256="0rqyv95l8h3s68ywhv3r7hm7j1mbm8prql7p2rlvv4xg31yqmnpl"; depends=[Biobase curl data_table dplyr limma magrittr R_utils readr tidyr xml2]; }; + GEOsubmission = derive2 { name="GEOsubmission"; version="1.56.0"; sha256="1kvk6v1pj6f252lzlvw79ffd7wadlc6kvpa174msi75ww5s2qfc0"; depends=[affy Biobase]; }; + GEWIST = derive2 { name="GEWIST"; version="1.48.0"; sha256="0q6rbx7qy8cmdafv4qabx6ppyq3x6658jr0139xv61nzgi8395v4"; depends=[car]; }; + GGPA = derive2 { name="GGPA"; version="1.16.0"; sha256="1lg62vxn4z6z3l9d18gmyvdr456hs76lczxfq8j2w509gflcrskb"; depends=[GGally matrixStats network Rcpp RcppArmadillo scales sna]; }; + GIGSEA = derive2 { name="GIGSEA"; version="1.22.0"; sha256="1yhxpm1amm6anzcss31pkg5xzw4q1nq1hjb6rx5p7a5dh9h8hdna"; depends=[locfdr MASS Matrix]; }; + GLAD = derive2 { name="GLAD"; version="2.68.0"; sha256="01qn4v7b7b633dz01njzmg48lga861pfqnys9f0fbk9damxc6rr1"; depends=[aws]; }; + GMRP = derive2 { name="GMRP"; version="1.32.0"; sha256="0g2pmnngpv9k7gaz7bd5b0gn9i0i86q36fcapai93w76ml8ccvab"; depends=[diagram GenomicRanges plotrix]; }; + GNET2 = derive2 { name="GNET2"; version="1.20.0"; sha256="1hgzvl4k5q84ig9njmfvmdwc64h7nwsg0kcsi3da3mizxahaj780"; depends=[DiagrammeR dplyr ggplot2 igraph matrixStats Rcpp reshape2 SummarizedExperiment xgboost]; }; + GNOSIS = derive2 { name="GNOSIS"; version="1.2.0"; sha256="0m20w85kixxqydrrf5cbphr1hvzlc2wmwjf68s9rr0llcfv7gy3r"; depends=[car cBioPortalData compareGroups dashboardthemes DescTools DT fabricatr fontawesome maftools magrittr operator_tools partykit RColorBrewer reshape2 rpart rstatix shiny shinycssloaders shinydashboard shinydashboardPlus shinyjs shinylogs shinymeta shinyWidgets survival survminer tidyverse]; }; + GOSemSim = derive2 { name="GOSemSim"; version="2.30.0"; sha256="0985w9b2iw7jbmpymfvqmpzshsy0lvqw7whc1djdnh58lwscnhcq"; depends=[AnnotationDbi GO_db Rcpp rlang yulab_utils]; }; + GOTHiC = derive2 { name="GOTHiC"; version="1.40.0"; sha256="101mf3pkchz0il0czrwixx1pv8hq9cjh8m59nii00m2vwma3slrd"; depends=[BiocGenerics BiocManager Biostrings BSgenome data_table GenomeInfoDb GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors ShortRead]; }; + GOexpress = derive2 { name="GOexpress"; version="1.38.0"; sha256="0hz01hmp4bf9njw79zqy08zx9q3c6qfs2xykz5x7xkngp65mzkxf"; depends=[Biobase biomaRt ggplot2 gplots randomForest RColorBrewer RCurl stringr]; }; + GOfuncR = derive2 { name="GOfuncR"; version="1.24.0"; sha256="1g3nppcmyj81ia3v9zvsr8jplk8kmvssspvxd94zxh6yb3wrrc6v"; depends=[AnnotationDbi GenomicRanges gtools IRanges mapplots Rcpp vioplot]; }; + GOpro = derive2 { name="GOpro"; version="1.30.0"; sha256="0s8yyg5myxvw61zai54d3dhai1cm43i8s8wnpf0qc476q4v2xgzl"; depends=[AnnotationDbi BH dendextend doParallel foreach GO_db IRanges MultiAssayExperiment org_Hs_eg_db Rcpp S4Vectors]; }; + GOstats = derive2 { name="GOstats"; version="2.70.0"; sha256="1dygsr8nlqksfpk00lk67dhj4fcpjg1x4dbl2r4sfanlk4hq76cs"; depends=[annotate AnnotationDbi AnnotationForge Biobase Category GO_db graph RBGL Rgraphviz]; }; + GPA = derive2 { name="GPA"; version="1.16.0"; sha256="1z97rwlqvahsjcrm1j00cz9lgnw1wym6lwhi7gf8g17avgk6s7g4"; depends=[DT ggplot2 ggrepel plyr Rcpp shiny shinyBS vegan]; }; + GRENITS = derive2 { name="GRENITS"; version="1.56.0"; sha256="04nbvr080s6syb2d981g4402ghl2gh6f2gwsiv41nnj4narvs752"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; }; + GRaNIE = derive2 { name="GRaNIE"; version="1.8.0"; sha256="1zdi6h1kmnj3b23qv268jg0iqfvgvn0h17d5l17yx3si9czcr8qr"; depends=[AnnotationHub biomaRt Biostrings checkmate circlize colorspace ComplexHeatmap data_table DESeq2 dplyr ensembldb forcats futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra igraph limma magrittr Matrix matrixStats patchwork progress RColorBrewer readr reshape2 rlang S4Vectors scales stringr SummarizedExperiment tibble tidyr tidyselect topGO viridis]; }; + GRmetrics = derive2 { name="GRmetrics"; version="1.30.0"; sha256="02dqb1n4q5zwhfhmdrynfa5djgnvry11x69r3z94rscxl94k9pan"; depends=[drc ggplot2 plotly S4Vectors SummarizedExperiment]; }; + GSALightning = derive2 { name="GSALightning"; version="1.32.0"; sha256="0cmp5c22fhykld7napzk2220lzzizslsx2zi0slmiifapcrjg9vy"; depends=[data_table Matrix]; }; + GSAR = derive2 { name="GSAR"; version="1.38.0"; sha256="0i3k977vv3ik9yjgwpv7r1wnd982a1m2vg5rawi99hkf703cjly6"; depends=[igraph]; }; + GSCA = derive2 { name="GSCA"; version="2.34.0"; sha256="1lycrigmlr8kcmc1svnxl3g8rzlhpk8kfmvspllyfp8cls35mypw"; depends=[ggplot2 gplots RColorBrewer reshape2 rhdf5 shiny sp]; }; + GSEABase = derive2 { name="GSEABase"; version="1.66.0"; sha256="1pnd8rmpk7gm89cvrqa8qwk40dszkfkhyydxp3gl13zng9c5bq40"; depends=[annotate AnnotationDbi Biobase BiocGenerics graph XML]; }; + GSEABenchmarkeR = derive2 { name="GSEABenchmarkeR"; version="1.24.0"; sha256="11aczfpbc31wq9h2ri7gn17ki2f61s801zik2lkwgvly9627kfzi"; depends=[AnnotationDbi AnnotationHub Biobase BiocFileCache BiocParallel edgeR EnrichmentBrowser ExperimentHub KEGGandMetacoreDzPathwaysGEO KEGGdzPathwaysGEO S4Vectors SummarizedExperiment]; }; + GSEAlm = derive2 { name="GSEAlm"; version="1.64.0"; sha256="0fh6fds2y7fsdg6r97ydbkayryxxlw2jrc9kq4knsvagj2jb72ph"; depends=[Biobase]; }; + GSEAmining = derive2 { name="GSEAmining"; version="1.14.0"; sha256="1qzvmji5qn25q3lgb06k0dsxcn65krsrsrh6n06azz8ybkja9sj6"; depends=[dendextend dplyr ggplot2 ggwordcloud gridExtra rlang stringr tibble tidytext]; }; + GSRI = derive2 { name="GSRI"; version="2.52.0"; sha256="0b8r1cih0zn8aj9nbpmqwiiqfhk9a2f0bxcqyx77g5jlg9b504kq"; depends=[Biobase fdrtool genefilter GSEABase les]; }; + GSReg = derive2 { name="GSReg"; version="1.38.0"; sha256="1wfapjggz0qnaq9cg30d51c0zm5z6bhhf764qwgcbs9ngyjfwbvx"; depends=[AnnotationDbi GenomicFeatures Homo_sapiens org_Hs_eg_db]; }; + GSVA = derive2 { name="GSVA"; version="1.52.3"; sha256="08nxg3q350n5gf975r6b0zq4cr7lchv2i811crc4xbb7q39kw8k4"; depends=[Biobase BiocParallel BiocSingular DelayedArray DelayedMatrixStats GSEABase HDF5Array IRanges Matrix S4Vectors SingleCellExperiment sparseMatrixStats SpatialExperiment SummarizedExperiment]; }; + GSgalgoR = derive2 { name="GSgalgoR"; version="1.14.0"; sha256="0mr0gdn5zkikjn5i5clq73vgmbnirl2abp84bjyzm5pf5dknjpmh"; depends=[cluster doParallel foreach matchingR nsga2R proxy survival]; }; + GUIDEseq = derive2 { name="GUIDEseq"; version="1.34.0"; sha256="1xn44w1z1izzf2qr4xsmrvc468swjp6zmf4wxc33jbk5r9lv0n0x"; depends=[BiocGenerics Biostrings BSgenome ChIPpeakAnno CRISPRseek data_table dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 hash IRanges limma matrixStats multtest openxlsx patchwork purrr pwalign rio rlang Rsamtools S4Vectors stringr tidyr]; }; + GWAS_BAYES = derive2 { name="GWAS.BAYES"; version="1.14.0"; sha256="05fp1wrddk9a961cx2ps0cad9rzagsyrfyfck6h1v3xb5gmz03ik"; depends=[caret GA limma MASS Matrix memoise]; }; + GWASTools = derive2 { name="GWASTools"; version="1.50.0"; sha256="013qv2wac90s1rv992bwzq4diqfq7r18qk7gcifmi22samplpnw4"; depends=[Biobase data_table DBI DNAcopy gdsfmt GWASExactHW lmtest logistf quantsmooth RSQLite sandwich survival]; }; + GWENA = derive2 { name="GWENA"; version="1.14.0"; sha256="1vwc7n0kyza4w3p7fbfrji6vamn042nwz4wa51ymcwg62j5k6yxk"; depends=[cluster dplyr dynamicTreeCut ggplot2 gprofiler2 igraph magrittr matrixStats NetRep purrr RColorBrewer rlist stringr SummarizedExperiment tibble tidyr WGCNA]; }; + GateFinder = derive2 { name="GateFinder"; version="1.24.0"; sha256="1rcxjnjcgd3j8vm4kz97qcvgbwxs0jb66p8wzfqkcjh0p99j6a6q"; depends=[diptest flowCore flowFP mvoutlier splancs]; }; + GeDi = derive2 { name="GeDi"; version="1.0.0"; sha256="193fnp0v74bsdszxxxywz9r45xqlmvn5vg0n5fcq1w8f15rpgizg"; depends=[BiocFileCache BiocNeighbors BiocParallel bs4Dash ComplexHeatmap dplyr DT fontawesome GeneTonic ggdendro ggplot2 GOSemSim igraph Matrix plotly RColorBrewer readxl rintrojs scales shiny shinyBS shinycssloaders shinyWidgets STRINGdb tm visNetwork wordcloud2]; }; + GenProSeq = derive2 { name="GenProSeq"; version="1.8.0"; sha256="0hpf03pjfi01l2afsm1wp5vc077adx06pb4ks602v5mxy9dm1x1y"; depends=[CatEncoders DeepPINCS keras mclust reticulate tensorflow ttgsea word2vec]; }; + GenVisR = derive2 { name="GenVisR"; version="1.36.0"; sha256="1xzzdy2mcy8as3szygly3kw6k7g5dp2vxmimcw6738fj37zbcd77"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings BSgenome data_table DBI GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra gtable gtools IRanges plyr reshape2 Rsamtools scales VariantAnnotation viridis]; }; + GeneBreak = derive2 { name="GeneBreak"; version="1.34.0"; sha256="0vgid513n8xra71nhabxdy0h6ffqr84sf9gzaccx27yiw2l1wg4s"; depends=[CGHbase CGHcall GenomicRanges QDNAseq]; }; + GeneExpressionSignature = derive2 { name="GeneExpressionSignature"; version="1.50.0"; sha256="0rflr71jfaiyhzymvr0x9cq4mcb153qq2m4x912jawc46wf4cj3x"; depends=[Biobase]; }; + GeneGA = derive2 { name="GeneGA"; version="1.54.0"; sha256="1gw9bxdmaak4g6chpya4xrvazrzb49bwlq1jk952vvgkrgcvnas1"; depends=[hash seqinr]; }; + GeneGeneInteR = derive2 { name="GeneGeneInteR"; version="1.30.0"; sha256="05d9i4nz7gf6g0g1bp0zpn3kqqfzf1lcjy7y67m1z8s96svkal47"; depends=[data_table FactoMineR GenomicRanges igraph IRanges kernlab mvtnorm Rsamtools snpStats]; }; + GeneMeta = derive2 { name="GeneMeta"; version="1.76.0"; sha256="1x73k2xid41f25yrzah3s9pqk51r0nda758kvfvh5py04yxs9xf1"; depends=[Biobase genefilter]; }; + GeneNetworkBuilder = derive2 { name="GeneNetworkBuilder"; version="1.46.0"; sha256="1gjirjj809c1vc3y4k07j8md0m0bksjkfy68v1v8b2d9kfws5vwc"; depends=[graph htmlwidgets plyr Rcpp Rgraphviz rjson XML]; }; + GeneOverlap = derive2 { name="GeneOverlap"; version="1.40.0"; sha256="0bfd4322m6g7dvas214i17k8sjsf62lza9darmhiwb4r8h30qmb2"; depends=[gplots RColorBrewer]; }; + GeneRegionScan = derive2 { name="GeneRegionScan"; version="1.60.0"; sha256="01vrw0k8s62i3mzk5f7mrnh7294i5smqgfz00bl0wjhy9yak5j34"; depends=[affxparser Biobase Biostrings RColorBrewer S4Vectors]; }; + GeneSelectMMD = derive2 { name="GeneSelectMMD"; version="2.48.0"; sha256="044i85vnvr5l1c1sbsh6s777invnch9yjkx3ffki9m0xnilvv5al"; depends=[Biobase limma MASS]; }; + GeneStructureTools = derive2 { name="GeneStructureTools"; version="1.24.0"; sha256="19inj0ds7hh4n5cq9mgi4ahx46cxpad2pfdmmhrzvlbm8ss4yw6x"; depends=[Biostrings BSgenome_Mmusculus_UCSC_mm10 data_table GenomicRanges Gviz IRanges plyr rtracklayer S4Vectors stringdist stringr]; }; + GeneTonic = derive2 { name="GeneTonic"; version="2.8.0"; sha256="0f84sbqkhh74al1rn8fhkg4vmy0i06qadl7342gawqngxfcffzkn"; depends=[AnnotationDbi backbone bs4Dash circlize colorspace colourpicker ComplexHeatmap ComplexUpset dendextend DESeq2 dplyr DT dynamicTreeCut expm ggforce ggplot2 ggrepel ggridges GO_db igraph matrixStats plotly RColorBrewer rintrojs rlang rmarkdown S4Vectors scales shiny shinyAce shinycssloaders shinyWidgets SummarizedExperiment tidyr tippy viridis visNetwork]; }; + GeneticsPed = derive2 { name="GeneticsPed"; version="1.66.0"; sha256="0cm65szy3nmkaxsrmv1qhpk8jsxma6b4y0v2nxg6hdqjn7z4zk43"; depends=[gdata genetics MASS]; }; + GenomAutomorphism = derive2 { name="GenomAutomorphism"; version="1.6.0"; sha256="13hflp7aglv8xadf1zgla8d0j1h4m4rrk0lyy0i0mxfhihl0wba8"; depends=[BiocGenerics BiocParallel Biostrings data_table doParallel dplyr foreach GenomeInfoDb GenomicRanges IRanges matrixStats numbers S4Vectors XVector]; }; + GenomeInfoDb = derive2 { name="GenomeInfoDb"; version="1.40.1"; sha256="155wj17pbdbixyg6mimv06wg3ylll8ysqh7rffjp65fw662jwhw0"; depends=[BiocGenerics GenomeInfoDbData IRanges S4Vectors UCSC_utils]; }; + GenomicAlignments = derive2 { name="GenomicAlignments"; version="1.40.0"; sha256="15jzdjna0r9n6ybvyw52v1d9f05vdsdxff0g8q0pa584a1sd2s7s"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; }; + GenomicDataCommons = derive2 { name="GenomicDataCommons"; version="1.28.0"; sha256="0jg4sa1lqn028y2ympb3x4s8yr7qa8ajrwqj2hhcl8zss3sx8gr2"; depends=[dplyr GenomicRanges httr IRanges jsonlite magrittr rappdirs readr rlang tibble tidyr xml2]; }; + GenomicDistributions = derive2 { name="GenomicDistributions"; version="1.12.0"; sha256="0yicpl29qcwyzswaxqd50sa12lg8c9d5i7xgdf2m7jwskx6nx5hx"; depends=[Biostrings broom data_table dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges plyr reshape2 scales]; }; + GenomicFeatures = derive2 { name="GenomicFeatures"; version="1.56.0"; sha256="1r1d9g5vq5y946v2z2xgmfb31k0576nj8i0yg6xfj9y2a0a6akc5"; depends=[AnnotationDbi BiocGenerics Biostrings DBI GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors XVector]; }; + GenomicFiles = derive2 { name="GenomicFiles"; version="1.40.0"; sha256="1b0n5aqvg6jb6rpikjzxndmcjxp31h6vhr1magzalqg7jmlvcv6i"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges MatrixGenerics Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; + GenomicInteractionNodes = derive2 { name="GenomicInteractionNodes"; version="1.8.0"; sha256="1xkrmpsgqqsd470f4dgnbs5zb62qfrbpmzw97jsarri57pmqxy7a"; depends=[AnnotationDbi GenomeInfoDb GenomicFeatures GenomicRanges GO_db graph IRanges RBGL S4Vectors]; }; + GenomicInteractions = derive2 { name="GenomicInteractions"; version="1.38.0"; sha256="16aaaa4nr1y5ng1hzw87q950clid28iqf4gkypcpihg3cz69axxg"; depends=[Biobase BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph InteractionSet IRanges Rsamtools rtracklayer S4Vectors stringr]; }; + GenomicOZone = derive2 { name="GenomicOZone"; version="1.18.0"; sha256="0i130gwf2ifgm635dhshfmnj97jqlz5nkwb98jbgz4ciq7mpdwv8"; depends=[biomaRt Ckmeans_1d_dp GenomeInfoDb GenomicRanges ggbio ggplot2 gridExtra IRanges lsr plyr Rdpack S4Vectors]; }; + GenomicPlot = derive2 { name="GenomicPlot"; version="1.2.2"; sha256="0s5slbkr6cpy5asl8v1fr914zgqg1q6gcwwf9nb0r8qh469c54pd"; depends=[BiocGenerics circlize ComplexHeatmap cowplot dplyr edgeR genomation GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggplotify ggpubr ggsci ggsignif IRanges plyranges RCAS Rsamtools rtracklayer scales tidyr txdbmaker VennDiagram viridis]; }; + GenomicRanges = derive2 { name="GenomicRanges"; version="1.56.1"; sha256="0g0ld9i58pdxw2pwxi9nzj82mkryag457pvh6cvbvhb28pfamkma"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; }; + GenomicScores = derive2 { name="GenomicScores"; version="2.16.0"; sha256="11sabicr2jm1cc9rdjr6vjqhf0gd9d7k04qlfhcdssvh02f957ia"; depends=[AnnotationHub Biobase BiocFileCache BiocGenerics BiocManager Biostrings DelayedArray GenomeInfoDb GenomicRanges HDF5Array httr IRanges rhdf5 S4Vectors XML]; }; + GenomicSuperSignature = derive2 { name="GenomicSuperSignature"; version="1.12.0"; sha256="0prplxp7l7hx6697a18kk2s5iyrdgpqwfh79n9lnala2h2q3vhs0"; depends=[Biobase BiocFileCache ComplexHeatmap dplyr flextable ggplot2 ggpubr irlba plotly S4Vectors SummarizedExperiment]; }; + GenomicTuples = derive2 { name="GenomicTuples"; version="1.38.0"; sha256="04inysn0aa2fmbnb01zk300x8qgz8bk4rhw68ka6ni7cbrn88ysa"; depends=[BiocGenerics data_table GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; + GeoDiff = derive2 { name="GeoDiff"; version="1.10.0"; sha256="17mm22cgq0259r15d49gv07igr8dpasylrnhsycx6mjg75zvz6jp"; depends=[Biobase GeomxTools lme4 Matrix NanoStringNCTools plyr Rcpp RcppArmadillo robust roptim testthat withr]; }; + GeoTcgaData = derive2 { name="GeoTcgaData"; version="2.4.0"; sha256="0hhhwnswjglxws75iqcn2sa66z9mr65n23p5i7c615n5qzrvcmw3"; depends=[cqn data_table plyr SummarizedExperiment topconfects]; }; + GeomxTools = derive2 { name="GeomxTools"; version="3.8.0"; sha256="093900a8himdfh752ah2wk9x5iczri0f3djsfi2mwzkb7frxpj0c"; depends=[Biobase BiocGenerics data_table dplyr EnvStats GGally ggplot2 lmerTest NanoStringNCTools readxl reshape2 rjson rlang S4Vectors SeuratObject stringr]; }; + GladiaTOX = derive2 { name="GladiaTOX"; version="1.20.0"; sha256="0krgsih0w60sl0gw1rpff89piv3mf1sk86hmlqjxl6idag8n2jil"; depends=[brew data_table DBI ggplot2 ggrepel numDeriv RColorBrewer RCurl RJSONIO RMariaDB RSQLite stringr tidyr XML xtable]; }; + Glimma = derive2 { name="Glimma"; version="2.14.0"; sha256="1d7rq3irp3n0fabfgjs2x2c9lscz70a38qf3wbxvi417qn7fpyla"; depends=[DESeq2 edgeR htmlwidgets jsonlite limma S4Vectors SummarizedExperiment]; }; + GloScope = derive2 { name="GloScope"; version="1.2.0"; sha256="0gdr5ws5p1xj4ip9xk10igrlwdr10x11j0wsfkr0f0y6352f2gm6"; depends=[BiocParallel FNN ggplot2 MASS mclust mvnfast RANN rlang SingleCellExperiment]; }; + GlobalAncova = derive2 { name="GlobalAncova"; version="4.22.0"; sha256="0z71a5h4y740k0hx84aavfxl1kpshm4gqs7mh6zf895i2r761bqh"; depends=[annotate AnnotationDbi Biobase corpcor dendextend globaltest GSEABase VGAM]; }; + GmicR = derive2 { name="GmicR"; version="1.18.0"; sha256="19zn4n21rprfhx8zmpcl7n5jyfhdz450b9dgw1ayrnnr0w4bf67h"; depends=[AnnotationDbi ape bnlearn Category data_table doParallel DT foreach GOstats gRain gRbase GSEABase org_Hs_eg_db org_Mm_eg_db reshape2 shiny WGCNA]; }; + GrafGen = derive2 { name="GrafGen"; version="1.0.0"; sha256="180ag0wvbhmd1vsza5lfphdx8d2phcfa4lzisi5fbk6n4195g830"; depends=[cowplot dplyr GenomicRanges ggplot2 ggpubr plotly RColorBrewer rlang scales shiny stringr zlibbioc]; }; + GraphAT = derive2 { name="GraphAT"; version="1.76.0"; sha256="0mxsgd08qd7fb28gbbgx21vvd5sf3nn0ymrlshsdpsdya5vmmv3d"; depends=[graph MCMCpack]; }; + GraphAlignment = derive2 { name="GraphAlignment"; version="1.68.0"; sha256="0f8h0lhykjw2nwwvz4gics1nsv6vjzk6axsgj94zwf84j4igm9jd"; depends=[]; }; + GraphPAC = derive2 { name="GraphPAC"; version="1.46.0"; sha256="0dy3yn6vhgbvn0ygrkznhaylhaslyrnmlw5kmq0inqvl9y2yl277"; depends=[igraph iPAC RMallow TSP]; }; + GreyListChIP = derive2 { name="GreyListChIP"; version="1.36.0"; sha256="0dj3pcycnjll8z1r61l6gnjvq74w2l0glrx6hqwcqvk5j7ixcdz7"; depends=[BSgenome GenomeInfoDb GenomicAlignments GenomicRanges MASS Rsamtools rtracklayer SummarizedExperiment]; }; + Guitar = derive2 { name="Guitar"; version="2.20.0"; sha256="1agr3n787dqly09wy274v9dg52vdb0n0z3gdh2zsbklkbmayqxqy"; depends=[AnnotationDbi dplyr GenomicFeatures GenomicRanges ggplot2 knitr magrittr rtracklayer]; }; + Gviz = derive2 { name="Gviz"; version="1.48.0"; sha256="07w37kq6zx99z980if4brwmw25vjgvxd8xj3l1893idbdf70py0p"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; }; + HDF5Array = derive2 { name="HDF5Array"; version="1.32.0"; sha256="0j8rz99qw1rism3f5cv7rksccijmnchrkw7s9shxk0528f6dj6p1"; depends=[BiocGenerics DelayedArray IRanges Matrix rhdf5 rhdf5filters Rhdf5lib S4Arrays S4Vectors]; }; + HDTD = derive2 { name="HDTD"; version="1.38.0"; sha256="15lc2g6mcvgy0v0pjl9f1khhznpxc7ij8aimj20w2qaz1h6sqmpp"; depends=[Rcpp RcppArmadillo]; }; + HELP = derive2 { name="HELP"; version="1.62.0"; sha256="08g9xivzgwla4qvsca015d2hr2xbgiga9wd2xm5xphhb64lgzass"; depends=[Biobase]; }; + HEM = derive2 { name="HEM"; version="1.76.0"; sha256="091axqfgm8alz4k76b7ap1dl2cx7cim4l43zyvf91wimr6a13pbx"; depends=[Biobase]; }; + HERON = derive2 { name="HERON"; version="1.2.0"; sha256="0z8bsvsj1xa4r93y244381yckqk4mc39ij3pabcbn2mgbihcs94d"; depends=[cluster data_table GenomicRanges harmonicmeanp IRanges limma Matrix matrixStats metap S4Vectors spdep SummarizedExperiment]; }; + HGC = derive2 { name="HGC"; version="1.12.0"; sha256="10g4lmhs8brfrci6n28iarzwm4dlvsbysssv2n25l1rp8wnl2sip"; depends=[ape dendextend dplyr ggplot2 Matrix mclust patchwork RANN Rcpp RcppEigen]; }; + HIBAG = derive2 { name="HIBAG"; version="1.40.0"; sha256="1q059hqx0k9nm9xgxlzxnl93f44hjhjpf4iql0f87v560xzy1pgk"; depends=[RcppParallel]; }; + HIPPO = derive2 { name="HIPPO"; version="1.16.0"; sha256="1fp2jxi5xlf3archv3z8gnrc3rsh12vkprk6xhdffw9n2mqap56c"; depends=[dplyr ggplot2 ggrepel gridExtra irlba magrittr Matrix reshape2 rlang Rtsne SingleCellExperiment umap]; }; + HIREewas = derive2 { name="HIREewas"; version="1.22.0"; sha256="1kdiqa1g34i5gmnaxm6xc4r2wfb8ypmglrxfgv8l39l81698lp04"; depends=[gplots quadprog]; }; + HMMcopy = derive2 { name="HMMcopy"; version="1.46.0"; sha256="1i2n4i4vkxqfgdcmwhz1vcbhxk716m1blc2drzh5449y6x3qd026"; depends=[data_table]; }; + HPAanalyze = derive2 { name="HPAanalyze"; version="1.22.0"; sha256="1cm88rg43mwi6qqp0p48698z89niygy8zr0g1fk0s6cd5z2i6qpy"; depends=[dplyr ggplot2 gridExtra openxlsx tibble xml2]; }; + HPiP = derive2 { name="HPiP"; version="1.10.0"; sha256="1kjsa8q70zvmjqcvrpcijf7w6c5k21ysdd8pd8zsxwkvck174gih"; depends=[caret corrplot dplyr ggplot2 httr igraph magrittr MCL pROC protr PRROC purrr readr stringr tibble tidyr]; }; + HTSFilter = derive2 { name="HTSFilter"; version="1.44.0"; sha256="11pqfg2msdxi57326slgp73j4dshj5r730sv1x0n9f7fd2187his"; depends=[Biobase BiocParallel DESeq2 edgeR]; }; + HTSeqGenie = derive2 { name="HTSeqGenie"; version="4.34.0"; sha256="1np04hiijz9jdxvlg1mk74w19ma32qrdjb9bc5cscrs1lgw78idh"; depends=[BiocGenerics BiocParallel Biostrings Cairo chipseq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gmapR hwriter IRanges pwalign Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment VariantAnnotation VariantTools]; }; + Harman = derive2 { name="Harman"; version="1.32.0"; sha256="1b6w8wrlsvxpzbsp4vkrpfvx4icbvncl11q4j773knz5q0q9l6q0"; depends=[Ckmeans_1d_dp matrixStats Rcpp]; }; + HarmonizR = derive2 { name="HarmonizR"; version="1.2.0"; sha256="1bjyfxhlsslns7jiaaivld56w9j1gavdnrbciil6kiqs2q63fpj9"; depends=[doParallel foreach janitor limma plyr seriation SummarizedExperiment sva]; }; + Harshlight = derive2 { name="Harshlight"; version="1.76.0"; sha256="1nqi2ad9hnm6j8hn8f6xp9zav6rsa5wlzb2z5fjnm9q4xbjblnjl"; depends=[affy altcdfenvs Biobase]; }; + Heatplus = derive2 { name="Heatplus"; version="3.12.0"; sha256="1pc63hk0smcflq4903hvs4pp8r0kzlx08j0m1kxlh14cxwppamyb"; depends=[RColorBrewer]; }; + HelloRanges = derive2 { name="HelloRanges"; version="1.30.0"; sha256="0idv6aravk0jj8p33kvc620p60ciyrkd293ba034g6j5921ym6gx"; depends=[BiocGenerics BiocIO Biostrings BSgenome docopt GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; + Herper = derive2 { name="Herper"; version="1.14.0"; sha256="0aj9gskx02p986n29cd1z5hrzp4qp5cvwki25vyafb805wf7v69v"; depends=[reticulate rjson withr]; }; + HiCBricks = derive2 { name="HiCBricks"; version="1.22.0"; sha256="0hbmy7vhg63n6r2lv8gvrlsj4xgqbf8mvaci2i4kpc9327jny2nn"; depends=[BiocParallel curl data_table digest GenomeInfoDb GenomicRanges ggplot2 IRanges jsonlite R_utils R6 RColorBrewer readr reshape2 rhdf5 S4Vectors scales stringr tibble viridis]; }; + HiCDCPlus = derive2 { name="HiCDCPlus"; version="1.12.0"; sha256="0x95v5h1qjks87gmis7p0y4bmj7xalqbgny0qfkaw8s561fhx3j9"; depends=[bbmle Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicInteractions GenomicRanges InteractionSet IRanges MASS pscl R_utils Rcpp rlang rtracklayer S4Vectors tibble tidyr]; }; + HiCDOC = derive2 { name="HiCDOC"; version="1.6.0"; sha256="1p8n3yljzlk8ic47101nw8d6dmxgadacgfh6pknkpxgk6vlcq6kh"; depends=[BiocGenerics BiocParallel cowplot data_table GenomeInfoDb GenomicRanges ggplot2 gridExtra gtools InteractionSet multiHiCcompare pbapply Rcpp S4Vectors SummarizedExperiment zlibbioc]; }; + HiCExperiment = derive2 { name="HiCExperiment"; version="1.4.0"; sha256="0wz08jwljv8zc658xl55rwwsfvy3lc3qg9dw7d41cw37wh40dkw1"; depends=[BiocGenerics BiocIO BiocParallel dplyr GenomeInfoDb GenomicRanges InteractionSet IRanges Matrix rhdf5 S4Vectors strawr vroom]; }; + HiCcompare = derive2 { name="HiCcompare"; version="1.26.0"; sha256="1rpdqij0lvs9cyl1z5lgw91332km1nb8053kk432bais9382jkxc"; depends=[BiocParallel data_table dplyr GenomicRanges ggplot2 gridExtra gtools InteractionSet IRanges KernSmooth mgcv pheatmap rhdf5 S4Vectors]; }; + HiContacts = derive2 { name="HiContacts"; version="1.6.0"; sha256="18rfv9z03dqdqifrxqv1l3m9s8nykygd9y6d7pya2sdfx8f0hgza"; depends=[BiocGenerics BiocIO BiocParallel dplyr GenomeInfoDb GenomicRanges ggplot2 ggrastr HiCExperiment InteractionSet IRanges Matrix readr RSpectra S4Vectors scales stringr SummarizedExperiment tibble tidyr]; }; + HiCool = derive2 { name="HiCool"; version="1.4.0"; sha256="06b26szb23mngcfx5xwdw6kz10gqjs69py0iz5piia4a7vppk8zk"; depends=[basilisk BiocIO dplyr GenomicRanges HiCExperiment InteractionSet IRanges plotly reticulate rmarkdown rmdformats S4Vectors sessioninfo stringr vroom]; }; + HiLDA = derive2 { name="HiLDA"; version="1.18.0"; sha256="1v5gvb84q09l8i7f1d4q7zpyxlzaq5bqifia706d60700wvfan29"; depends=[abind BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 cowplot forcats GenomicFeatures GenomicRanges ggplot2 R2jags Rcpp S4Vectors stringr tidyr TxDb_Hsapiens_UCSC_hg19_knownGene XVector]; }; + HiTC = derive2 { name="HiTC"; version="1.48.0"; sha256="0nxk3rdfw78bwyxjd3bbm093i8hqyk63rz0fvx3fi04qpa1fv39r"; depends=[Biostrings GenomeInfoDb GenomicRanges IRanges Matrix RColorBrewer rtracklayer]; }; + HicAggR = derive2 { name="HicAggR"; version="1.0.2"; sha256="1lpf7m3rsm3ng0i6gqyl6l3jvawnl8wcfjl0gkxz604bwszjvhb3"; depends=[BiocGenerics BiocParallel checkmate data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra InteractionSet IRanges Matrix purrr reshape rhdf5 rlang rtracklayer S4Vectors strawr stringr tibble tidyr withr]; }; + HilbertCurve = derive2 { name="HilbertCurve"; version="1.34.0"; sha256="0kka2haa84kv2xwqny0ii0mfq0gjdh4vv1zkjk0lbqszqk1h6hab"; depends=[circlize GenomicRanges HilbertVis IRanges png polylabelr]; }; + HilbertVis = derive2 { name="HilbertVis"; version="1.62.0"; sha256="07ndnzqjpklr3k9bbnl9y7jpb91ng1wkssb4kqaxp5nsc2ixidpd"; depends=[lattice]; }; + HilbertVisGUI = derive2 { name="HilbertVisGUI"; version="1.62.0"; sha256="0mzb9yb9f5d6yr8889cn8n20br5mf07xg97q09hxxhxgy8pq33mf"; depends=[HilbertVis]; }; + HubPub = derive2 { name="HubPub"; version="1.12.0"; sha256="02xqw3xkhzk2fxx4l1h5gl5v0diamssr1dw9x871glxjl4kw07xm"; depends=[available aws_s3 BiocManager biocthis dplyr fs usethis]; }; + HumanTranscriptomeCompendium = derive2 { name="HumanTranscriptomeCompendium"; version="1.20.0"; sha256="1y46zsl08k6sdih8psar85fyc5dfk2vraxmfry70zx57vbjbin92"; depends=[BiocManager S4Vectors shiny ssrch SummarizedExperiment]; }; + HybridExpress = derive2 { name="HybridExpress"; version="1.0.0"; sha256="1cpvw6ycbh60wn39ws0l6hrgy9x97glb56f87sn2qg9li6hxjshh"; depends=[BiocParallel ComplexHeatmap DESeq2 ggplot2 patchwork RColorBrewer rlang SummarizedExperiment]; }; + HybridMTest = derive2 { name="HybridMTest"; version="1.48.0"; sha256="0fh0v29fpwzramqnbxmzpmgiziwswdx38734g2lx303b0blkbv7j"; depends=[Biobase fdrtool MASS survival]; }; + IFAA = derive2 { name="IFAA"; version="1.6.0"; sha256="1y2vsz14d5a22m21n7zmfm64ffvh8hq0hkwnr44ifysy4zfmjg0x"; depends=[DescTools doParallel doRNG foreach glmnet HDCI mathjaxr Matrix MatrixExtra parallelly S4Vectors stringr SummarizedExperiment]; }; + IHW = derive2 { name="IHW"; version="1.32.0"; sha256="0j7rfyhpzr8zzyvjyphlfviy07z30nzsqq6isi4l0r4qgaziy1s6"; depends=[BiocGenerics fdrtool lpsymphony slam]; }; + ILoReg = derive2 { name="ILoReg"; version="1.14.0"; sha256="1zw6m2a5jr77mbjbzc966v98pdfw2s0sg1sqssdf7qsb0izj10b0"; depends=[aricode cluster cowplot dendextend DescTools doRNG doSNOW dplyr fastcluster foreach ggplot2 LiblineaR Matrix parallelDist pheatmap plyr reshape2 RSpectra Rtsne S4Vectors scales SingleCellExperiment SparseM SummarizedExperiment umap]; }; + IMAS = derive2 { name="IMAS"; version="1.28.0"; sha256="1n55qs4v5x7clpbhlrby5dcz9xldqrsfp6g4k6g0s1g0lk2rplqm"; depends=[AnnotationDbi BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfortify ggplot2 gridExtra IRanges IVAS lattice lme4 Matrix Rsamtools S4Vectors survival]; }; + IMMAN = derive2 { name="IMMAN"; version="1.24.0"; sha256="1yn0p53ar9b9g5d2gfyd70cp7vm69fsgn8av9lvc6qyac18w9y5j"; depends=[igraph pwalign seqinr STRINGdb]; }; + IMPCdata = derive2 { name="IMPCdata"; version="1.40.0"; sha256="0s0zap78lwgava7k3dng8hjpd1zifh9438iqfqghydq8scyr3akc"; depends=[rjson]; }; + INDEED = derive2 { name="INDEED"; version="2.18.0"; sha256="0ky21l4igsfznzq8is8apjhiasxryn8sjhjqjnpp1z8m7q93a0sf"; depends=[devtools glasso igraph visNetwork]; }; + INPower = derive2 { name="INPower"; version="1.40.0"; sha256="1w3gjw1avjpvnqy5ladypkr862jqd910zi74ah8rdfzid4r79klm"; depends=[mvtnorm]; }; + INSPEcT = derive2 { name="INSPEcT"; version="1.34.0"; sha256="0147ss218d3dnqbdgfwsg24an63qln8l5kkv0y4hm56bncdrm1i0"; depends=[Biobase BiocGenerics BiocParallel DESeq2 deSolve GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges KernSmooth plgem pROC readxl rootSolve Rsamtools rtracklayer S4Vectors shiny SummarizedExperiment TxDb_Mmusculus_UCSC_mm9_knownGene]; }; + INTACT = derive2 { name="INTACT"; version="1.4.0"; sha256="1r1v8cvms0dyjf0f5f9v6qp7hz0rfb2yfbckvvrkq26yjwfbmlaa"; depends=[bdsmatrix numDeriv SQUAREM tidyr]; }; + IONiseR = derive2 { name="IONiseR"; version="2.28.0"; sha256="1ihski4akl70v6kq03di6w1pz63dx6rxgmyjkm0dv0nhgkmrza22"; depends=[BiocGenerics BiocParallel Biostrings bit64 dplyr ggplot2 magrittr rhdf5 ShortRead stringr tibble tidyr XVector]; }; + IPO = derive2 { name="IPO"; version="1.30.0"; sha256="0sh4ajra67j2v359022s4cm2vfc0i9wjagcjv8jh1jf5jq70dyfh"; depends=[BiocParallel CAMERA rsm xcms]; }; + IRanges = derive2 { name="IRanges"; version="2.38.0"; sha256="047688hrxyg2hxd1wbywxqnvxk1622xlldzana9g5hhxg9lldrk2"; depends=[BiocGenerics S4Vectors]; }; + ISAnalytics = derive2 { name="ISAnalytics"; version="1.14.0"; sha256="05khils483a1d64ikg4j5vl3rcwsjgik04b75a6rr3crkdba7fl4"; depends=[bslib datamods dplyr DT forcats fs ggplot2 ggrepel glue lifecycle lubridate purrr readr readxl rlang shiny shinyWidgets stringr tibble tidyr]; }; + ISLET = derive2 { name="ISLET"; version="1.6.0"; sha256="0vhpxr0civdhcxiy39aycir8a68vgrydv3nx1p9rn4hhpw7dq7gi"; depends=[abind BiocGenerics BiocParallel lme4 Matrix nnls purrr SummarizedExperiment]; }; + ISoLDE = derive2 { name="ISoLDE"; version="1.32.0"; sha256="1yq7h8jjapjr7j9f2p4ikkvxh46vz4y7pdwddsi4dx7xkfjhzxmm"; depends=[]; }; + ITALICS = derive2 { name="ITALICS"; version="2.64.0"; sha256="06h6iqrqzlcj4hyhj1ikl9isr3ls1pph49v5n7cp87czinr0nd3s"; depends=[affxparser DBI GLAD ITALICSData oligo oligoClasses pd_mapping50k_xba240]; }; + IVAS = derive2 { name="IVAS"; version="2.24.0"; sha256="15l0qga9a4q79y1r3pwcv3c0m0qpyjay3fvv7b4zwx7hvmkjfy1b"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges ggfortify ggplot2 IRanges lme4 Matrix S4Vectors]; }; + IWTomics = derive2 { name="IWTomics"; version="1.28.0"; sha256="0ksmpa6f5zlgdhma1vxsfd64g7jhisffg5sbnz2xhf7faz14gc08"; depends=[fda GenomicRanges gtable IRanges KernSmooth S4Vectors]; }; + Icens = derive2 { name="Icens"; version="1.76.0"; sha256="16bblkxp8pj7qaxfzmp30lfj8vy13d3q8cf5y0g40lk4rbldx3bz"; depends=[survival]; }; + IdeoViz = derive2 { name="IdeoViz"; version="1.40.0"; sha256="0mq8qdhi2ccfa66rygn83hpm0fsmwiahpmrh8q522yl618mkrjcs"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges RColorBrewer rtracklayer]; }; + IgGeneUsage = derive2 { name="IgGeneUsage"; version="1.18.0"; sha256="0b2bndc36yd0a4yi2z3870g1b9c1ddpwp44gl42ysk29qwis2yi6"; depends=[BH Rcpp RcppEigen RcppParallel reshape2 rstan rstantools StanHeaders SummarizedExperiment tidyr]; }; + InPAS = derive2 { name="InPAS"; version="2.12.0"; sha256="05hzd8rixqz5d86d4gv7wh68kfbiynbp2xij9r2nj0h90av0h95b"; depends=[AnnotationDbi batchtools Biobase Biostrings BSgenome cleanUpdTSeq depmixS4 dplyr flock future future_apply GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges limma magrittr parallelly plyranges preprocessCore readr reshape2 RSQLite S4Vectors]; }; + InTAD = derive2 { name="InTAD"; version="1.24.0"; sha256="16npavms8qxccldpik27qbsv3w0drcjr132nz2ky2cvi01bcp4l2"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggpubr IRanges mclust MultiAssayExperiment qvalue rtracklayer S4Vectors SummarizedExperiment]; }; + Informeasure = derive2 { name="Informeasure"; version="1.14.0"; sha256="0v4wy0gyap9w38a505hhhv1apmixazd4la8wjspdx718az92igg3"; depends=[entropy]; }; + IntEREst = derive2 { name="IntEREst"; version="1.28.0"; sha256="0i6q422vhf94ka0v69hs5irg506wb467rwnnn12xvsfyq54ak4dm"; depends=[BiocGenerics BiocParallel Biostrings DBI DESeq2 DEXSeq edgeR GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges IRanges RMySQL Rsamtools S4Vectors seqinr seqLogo SummarizedExperiment txdbmaker]; }; + InterCellar = derive2 { name="InterCellar"; version="2.10.0"; sha256="020z08v199psgcl4z3kbwl1zgp10iwn5n60c4bq555fz6nbjb56n"; depends=[biomaRt circlize colorspace colourpicker ComplexHeatmap config data_table dendextend dplyr DT factoextra fmsb fs ggplot2 golem htmltools htmlwidgets igraph plotly plyr readxl rlang scales shiny shinyalert shinycssloaders shinydashboard shinyFeedback shinyFiles signal tibble tidyr umap visNetwork wordcloud2]; }; + InterMineR = derive2 { name="InterMineR"; version="1.26.0"; sha256="0isw4rg89139xmrcfb9r7jc3z8jj1my4radhinah0vad2cwb36l0"; depends=[Biostrings GenomicRanges httr igraph IRanges RCurl RJSONIO S4Vectors sqldf SummarizedExperiment XML xml2]; }; + InteractionSet = derive2 { name="InteractionSet"; version="1.32.0"; sha256="0ikkmhz6grmhksmyypj9hqmblls4cgww0dx4kzg4cy5bpavsq1hs"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix Rcpp S4Vectors SummarizedExperiment]; }; + InteractiveComplexHeatmap = derive2 { name="InteractiveComplexHeatmap"; version="1.12.0"; sha256="0sfhr3f7fdw9zgw2wn7dhk1zwmhn3k3iy8xa0j9dv7bpa2mcvw1b"; depends=[clisymbols ComplexHeatmap digest fontawesome GetoptLong htmltools IRanges jsonlite kableExtra RColorBrewer S4Vectors shiny svglite]; }; + IntramiRExploreR = derive2 { name="IntramiRExploreR"; version="1.26.0"; sha256="19q6znbmqj4i6k60c5f05y7s7rp9h3ra3081ra3fc5p2b74gb6cv"; depends=[FGNet igraph knitr]; }; + IsoBayes = derive2 { name="IsoBayes"; version="1.2.0"; sha256="19vga38f9srbsb6vglb0ni33cfrzrn5z94d0v4apnki4r6plp2k2"; depends=[data_table doParallel doRNG foreach ggplot2 glue HDInterval iterators Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; }; + IsoCorrectoR = derive2 { name="IsoCorrectoR"; version="1.22.0"; sha256="19h5wndzj3sgvhb7blx07pjammh05kwp5vwjv0drvlj829pqhkia"; depends=[dplyr magrittr pracma quadprog readr readxl stringr tibble WriteXLS]; }; + IsoCorrectoRGUI = derive2 { name="IsoCorrectoRGUI"; version="1.20.0"; sha256="1zwnp50sargc3991v22sj7hg01c1ddqi487xmvj5in7yjccys2dm"; depends=[IsoCorrectoR readxl tcltk2]; }; + IsoformSwitchAnalyzeR = derive2 { name="IsoformSwitchAnalyzeR"; version="2.4.0"; sha256="0mmxyq1r4kq1igj108pr0r9215hwmyph5svx0djd460knak24y6z"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome DBI DEXSeq dplyr edgeR futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges limma magrittr pfamAnalyzeR plyr pwalign RColorBrewer RCurl readr reshape2 rtracklayer S4Vectors satuRn stringr SummarizedExperiment sva tibble tidyr tximeta tximport VennDiagram XVector]; }; + KBoost = derive2 { name="KBoost"; version="1.12.0"; sha256="0xmnfcfvlmwgs01k81dkksgia93dvyph6kdacn9gnpl3559q5ilg"; depends=[]; }; + KCsmart = derive2 { name="KCsmart"; version="2.62.0"; sha256="0qc8kp5y9dcq23wsqpbin9hds1j5jnq3w255rg3k0ni1iq95c6m4"; depends=[BiocGenerics KernSmooth multtest siggenes]; }; + KEGGREST = derive2 { name="KEGGREST"; version="1.44.0"; sha256="1xvi11ywr3vj2m8fpqblzg2pmj1vsc0dm8fgggv6w96l6x6sfyf0"; depends=[Biostrings httr png]; }; + KEGGgraph = derive2 { name="KEGGgraph"; version="1.64.0"; sha256="0lffqbvwmfjbw5ymxr969znvb53hbqfgq1zwffsc768rv3h4c6p7"; depends=[graph RCurl Rgraphviz XML]; }; + KEGGlincs = derive2 { name="KEGGlincs"; version="1.30.0"; sha256="0jxa42ax4r991vc2cqjdzyfwknf5929xyvlpimra3fbpgpp8sjpg"; depends=[AnnotationDbi gtools hgu133a_db httr igraph KEGGgraph KEGGREST KOdata org_Hs_eg_db plyr RJSONIO XML]; }; + KinSwingR = derive2 { name="KinSwingR"; version="1.22.0"; sha256="0dlqwi2a9hbl4nh6kp4bxv3acvnvmgg5ssbymvf2k8ng4g1kxi3r"; depends=[BiocParallel data_table sqldf]; }; + KnowSeq = derive2 { name="KnowSeq"; version="1.18.0"; sha256="1iv6cghkq0qi0d2fsj9x74jzvf1zrrknc3kx1b1xpa7lc0x11ym4"; depends=[caret cqn e1071 edgeR ggplot2 gridExtra Hmisc httr jsonlite kernlab limma praznik R_utils randomForest reshape2 rlist rmarkdown stringr sva XML]; }; + LACE = derive2 { name="LACE"; version="2.8.0"; sha256="07izkiljmq0rbrijsgv45qvpp4zmaw78qqavzbvaw729pl172haz"; depends=[biomaRt bsplus callr configr curl data_table data_tree doParallel dplyr DT forcats foreach fs ggplot2 htmltools htmlwidgets igraph jsonlite logr Matrix purrr RColorBrewer readr Rfast shiny shinyBS shinydashboard shinyFiles shinyjs shinythemes shinyvalidate sortable stringi stringr SummarizedExperiment svglite tidyr]; }; + LBE = derive2 { name="LBE"; version="1.72.0"; sha256="03vmsblzh5vw8p8xdd39cbl714rq1nh4wqflprsmpnyd1gkn8p4z"; depends=[]; }; + LEA = derive2 { name="LEA"; version="3.16.0"; sha256="0r6nj6ck77fhbmqifbx4srj1f3yr7haiinphcm0p4g8b7zn4a6fm"; depends=[]; }; + LOBSTAHS = derive2 { name="LOBSTAHS"; version="1.30.0"; sha256="0r5s92jfvavxg6amml14lfqv9azshdf6vq7pyf9izbd79whxr6wn"; depends=[CAMERA xcms]; }; + LOLA = derive2 { name="LOLA"; version="1.34.0"; sha256="1i5axxzdwl6j1cgxfdfnaisv6bj4qbrhic5ba2k3wbhkgr144xcc"; depends=[BiocGenerics data_table GenomicRanges IRanges reshape2 S4Vectors]; }; + LPE = derive2 { name="LPE"; version="1.78.0"; sha256="1a2bgk3a1irf45rda1dnbq0gak8ldw328ibvhp10fcj2dyvd53rx"; depends=[]; }; + LRBaseDbi = derive2 { name="LRBaseDbi"; version="2.14.0"; sha256="11h41iq3ivbyrd2xrhphryqkrfdyr8j8hjdyjbbfsxhq8b4pxz9a"; depends=[AnnotationDbi Biobase DBI RSQLite]; }; + LRcell = derive2 { name="LRcell"; version="1.12.0"; sha256="129wwaa6ppayyirlyra720a2yhabvihy11yfbr3yddnk7jzgzm8a"; depends=[AnnotationHub BiocParallel dplyr ExperimentHub ggplot2 ggrepel magrittr]; }; + LedPred = derive2 { name="LedPred"; version="1.38.0"; sha256="1ziw6ya46s55gynlrl8dh6p3n0l1m01b0q6b9y6fc13pknjjbarh"; depends=[akima e1071 ggplot2 irr jsonlite plot3D plyr RCurl ROCR testthat]; }; + LinTInd = derive2 { name="LinTInd"; version="1.8.0"; sha256="01ij93fylp7bch2rywz31bpbhdgi8cbsn8nngsp730pd3pyw8mpf"; depends=[ape BiocGenerics Biostrings cowplot data_tree dplyr ggnewscale ggplot2 ggtree IRanges networkD3 pheatmap purrr pwalign reshape2 rlist S4Vectors stringdist stringr]; }; + LinkHD = derive2 { name="LinkHD"; version="1.18.0"; sha256="00vfzs3121l4bqy3mb4pblfjcna5zaa4iqrzrz9pfkwm2wcf2zis"; depends=[cluster data_table emmeans ggplot2 ggpubr gridExtra MultiAssayExperiment reshape2 rio scales vegan]; }; + Linnorm = derive2 { name="Linnorm"; version="2.28.0"; sha256="1la6fwaap7957rrb4cs6w48kjz4hqrw3h39lpps419d4cbnsp5jz"; depends=[amap apcluster ellipse fastcluster fpc ggdendro ggplot2 gmodels igraph limma MASS mclust Rcpp RcppArmadillo Rtsne statmod vegan zoo]; }; + LiquidAssociation = derive2 { name="LiquidAssociation"; version="1.58.0"; sha256="0hgr074a4q64cyw2dbc3ncm9rwkv0d2fs5wzlkacr956wv3zzxld"; depends=[Biobase geepack org_Sc_sgd_db yeastCC]; }; + LoomExperiment = derive2 { name="LoomExperiment"; version="1.22.0"; sha256="12xx78pbfdhh1iprm8vfbnwi3dm7slf47y5a6p78spnhsykb3ris"; depends=[BiocIO DelayedArray GenomicRanges HDF5Array Matrix rhdf5 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; + LymphoSeq = derive2 { name="LymphoSeq"; version="1.32.0"; sha256="0km3k6sbcb573mk0wb6hq1xqmbkksnvkv8mx5b9jqr4r840lh909"; depends=[Biostrings circlize data_table dplyr ggplot2 ggtree ineq LymphoSeqDB msa phangorn plyr RColorBrewer reshape stringdist UpSetR VennDiagram]; }; + M3C = derive2 { name="M3C"; version="1.26.0"; sha256="1h3zxb3m68lq37g25zqxpmk2c9yrdhydyhh7ad2d30hif73qiacm"; depends=[cluster corpcor doParallel doSNOW foreach ggplot2 Matrix matrixcalc Rtsne umap]; }; + M3Drop = derive2 { name="M3Drop"; version="1.30.0"; sha256="1ksdr7p517sidp99kl4bjy88i18c7hxgd7zlrj4h0zrvy3fjh1r4"; depends=[bbmle gplots Hmisc irlba Matrix matrixStats numDeriv RColorBrewer reldist scater statmod]; }; + MACSQuantifyR = derive2 { name="MACSQuantifyR"; version="1.18.0"; sha256="0f46dgp5cjakc97zb7rz2fnx5bzb78qfbw2fdc30jv1c9zn849f1"; depends=[ggplot2 ggrepel gridExtra lattice latticeExtra png prettydoc readxl rmarkdown rvest xml2]; }; + MACSr = derive2 { name="MACSr"; version="1.12.0"; sha256="04qra9rwj3f259k2f8h1v8g8cnkm2ryrr84rq6pmkr9ax0wbym63"; depends=[AnnotationHub basilisk ExperimentHub reticulate S4Vectors]; }; + MADSEQ = derive2 { name="MADSEQ"; version="1.30.0"; sha256="0b15wg8nsavl2994clrv72rl6qn5b8pbxk1wqwqcrdab832pd4m7"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 coda GenomeInfoDb GenomicAlignments GenomicRanges IRanges preprocessCore rjags Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation vcfR VGAM zlibbioc]; }; + MAGAR = derive2 { name="MAGAR"; version="1.12.0"; sha256="10ki05dffrc9b4ghwjlcc51m9zviyffsldwp5w6m740y9gd0hjcg"; depends=[argparse bigstatsr crlmm data_table doParallel ff HDF5Array igraph impute jsonlite plyr reshape2 rjson RnBeads RnBeads_hg19 RnBeads_hg38 snpStats UpSetR]; }; + MAGeCKFlute = derive2 { name="MAGeCKFlute"; version="2.8.0"; sha256="1fbwd1wi9z6fgq2whqazyqwm71j7h87dcv4vh3f23yzxm337qpiy"; depends=[Biobase clusterProfiler depmap DOSE enrichplot ggplot2 ggrepel gridExtra msigdbr pathview reshape2]; }; + MAI = derive2 { name="MAI"; version="1.10.0"; sha256="0fj5q9bbwazicncyxn7940jxkka1m76327cgwl3skj8a1xr6nlfq"; depends=[caret doParallel e1071 foreach future future_apply missForest pcaMethods S4Vectors SummarizedExperiment tidyverse]; }; + MAIT = derive2 { name="MAIT"; version="1.38.0"; sha256="0b33n6n3v88rad6ndpldsz3kb3l35fq7w6vqm5fzd9nxn9h5ayws"; depends=[agricolae CAMERA caret class e1071 gplots MASS pls plsgenomics Rcpp xcms]; }; + MANOR = derive2 { name="MANOR"; version="1.76.0"; sha256="0mlhv4gy4bxvdm0drwwrm4x48wy0mghzcqhvaw2rhw0h65rmy5ps"; depends=[GLAD]; }; + MAPFX = derive2 { name="MAPFX"; version="1.0.0"; sha256="16iqj70hhsgvnlb8g9z42xplfdsryzlc9cq4ndky01izmqi0ybvx"; depends=[Biobase circlize ComplexHeatmap cowplot e1071 flowCore ggplot2 glmnetUtils gtools iCellR igraph pbapply RColorBrewer reshape2 Rfast stringr uwot xgboost]; }; + MAST = derive2 { name="MAST"; version="1.30.0"; sha256="1k8an0ifcgx54lqzpim3q37y4rhv57i94i46dlpmdyfghqqw0fny"; depends=[abind Biobase BiocGenerics data_table ggplot2 Matrix plyr progress reshape2 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; + MBASED = derive2 { name="MBASED"; version="1.38.0"; sha256="1gh12y9l87g01s8f60g82k43pjm4i7zan0l1xnw042qiskz6x92h"; depends=[BiocGenerics BiocParallel GenomicRanges RUnit SummarizedExperiment]; }; + MBAmethyl = derive2 { name="MBAmethyl"; version="1.38.0"; sha256="05p05qp8g23l1c4i9vnkysq1srnzpiq8wc45zzg80hms3ab5qdzp"; depends=[]; }; + MBCB = derive2 { name="MBCB"; version="1.58.0"; sha256="17m8ajwffjl6ldzmlq79hj9s0nkjparpks685jjgmw8gx80q3ln1"; depends=[preprocessCore tcltk2]; }; + MBECS = derive2 { name="MBECS"; version="1.8.0"; sha256="15nv5rbw158d071gscms6p42wzf6ibnabiqcq256rcz6j0r69b63"; depends=[cluster dplyr ggplot2 gridExtra limma lme4 lmerTest magrittr Matrix pheatmap phyloseq rmarkdown ruv sva tibble tidyr vegan]; }; + MBQN = derive2 { name="MBQN"; version="2.16.0"; sha256="0c5knn15yiki5vi6ln5f0r4hkq3bnv8da5yqflgbgqwn7fn277cr"; depends=[BiocFileCache ggplot2 limma PairedData preprocessCore rappdirs RCurl rmarkdown SummarizedExperiment xml2]; }; + MBttest = derive2 { name="MBttest"; version="1.32.0"; sha256="0qfl0qaw99b1q8j7fq8f1vdkxsjjp6flrg3vwr3bksfi5z58hpzz"; depends=[gplots gtools]; }; + MCbiclust = derive2 { name="MCbiclust"; version="1.28.0"; sha256="1alz583dnmm9xvby1fcfkz2pxach6saj2ni5qma1r31ac4sx0b3l"; depends=[AnnotationDbi BiocParallel cluster GGally ggplot2 GO_db org_Hs_eg_db scales WGCNA]; }; + MDTS = derive2 { name="MDTS"; version="1.24.0"; sha256="16mm79gqqwpjfhmx0ppidg05gk7hbzw2d0hgxx9fzpfaixkx2k7p"; depends=[Biostrings DNAcopy GenomicAlignments GenomicRanges IRanges Rsamtools stringr]; }; + MEAL = derive2 { name="MEAL"; version="1.34.0"; sha256="1njqd9546ggnncmnri8nm9h2cq1wrq075fpng86d994zpgvq2xn8"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 Gviz IRanges isva limma matrixStats minfi missMethyl MultiDataSet permute S4Vectors SmartSVA SummarizedExperiment vegan]; }; + MEAT = derive2 { name="MEAT"; version="1.16.0"; sha256="0qq5k0xc7vsc32nh6f1qw4cy960rh43a8caqpjprvkfgp9mbvxfg"; depends=[dplyr dynamicTreeCut glmnet impute minfi RPMM stringr SummarizedExperiment tibble wateRmelon]; }; + MEB = derive2 { name="MEB"; version="1.18.0"; sha256="18vhf7f0jx13b8vs4kgm2qli3xxinv9rcm4r8xfd9p1ldmmbh6bn"; depends=[e1071 edgeR scater SingleCellExperiment SummarizedExperiment wrswoR]; }; + MEDIPS = derive2 { name="MEDIPS"; version="1.56.0"; sha256="0lv4x4ms3gabin47lv08rl2igddnr2r9d5xf3w1zaz8d2fj1k1wq"; depends=[biomaRt Biostrings BSgenome DNAcopy edgeR GenomicRanges gtools IRanges preprocessCore Rsamtools rtracklayer]; }; + MEDME = derive2 { name="MEDME"; version="1.64.0"; sha256="1zqqbb36qy1ad3fp2b29wm94g0qj95p8aj4jskkj7zca5j01jvzr"; depends=[Biostrings drc MASS]; }; + MEIGOR = derive2 { name="MEIGOR"; version="1.38.0"; sha256="05k3n6zr75hd76l7v19i88hp0y7x2k2x4nhdwx86ya9gp8xad069"; depends=[CNORode deSolve Rsolnp snowfall]; }; + MGFM = derive2 { name="MGFM"; version="1.38.0"; sha256="0f6j2bq0zv2lfypd4wbbmapgs132k7yzjw11h9rs6c4llhlk5ns2"; depends=[annotate AnnotationDbi]; }; + MGFR = derive2 { name="MGFR"; version="1.30.0"; sha256="07g01scd15zprm6ygvj9pjrsj553vk073mjyqvnk6pxy97r7slfa"; depends=[annotate biomaRt]; }; + MGnifyR = derive2 { name="MGnifyR"; version="1.0.0"; sha256="0siqjril79bcbs90v7ng1j2rzrs4nl5y4wv1ih2cgp464n8agh6a"; depends=[ape BiocGenerics dplyr httr mia MultiAssayExperiment plyr reshape2 S4Vectors SummarizedExperiment tidyjson TreeSummarizedExperiment urltools]; }; + MICSQTL = derive2 { name="MICSQTL"; version="1.2.2"; sha256="141dgc7k28ig9yw6km7ahjp0zyshg4kp3f6bs0ixnv6566dlb4c9"; depends=[BiocParallel dirmult ggplot2 ggpubr ggridges glue magrittr nnls purrr S4Vectors SummarizedExperiment TCA TOAST]; }; + MIRA = derive2 { name="MIRA"; version="1.26.0"; sha256="05s4wm7cnjyb1sg6zawp5rxj23ym5kkh95cj79k6cx6l0fb946c0"; depends=[Biobase BiocGenerics bsseq data_table GenomicRanges ggplot2 IRanges S4Vectors]; }; + MIRit = derive2 { name="MIRit"; version="1.0.0"; sha256="1c6zz24l2l362lkyha9ls7a990dpvpxskyzxz755zkf0q4cpdyn4"; depends=[AnnotationDbi BiocFileCache BiocParallel DESeq2 edgeR fgsea genekitr geneset ggplot2 ggpubr graph graphite httr limma MultiAssayExperiment Rcpp readxl Rgraphviz rlang]; }; + MLInterfaces = derive2 { name="MLInterfaces"; version="1.84.0"; sha256="1m8clkb5rznzv2fwrl59csq8v0ibqwdm4fphq10b8pmyvj880qpn"; depends=[annotate Biobase BiocGenerics cluster fpc gbm gdata genefilter ggvis hwriter magrittr MASS mlbench pls RColorBrewer Rcpp rpart sfsmisc shiny SummarizedExperiment threejs]; }; + MLP = derive2 { name="MLP"; version="1.52.0"; sha256="0ij15mcpahgykaalaj954qhk21gd967sngn2ad4wh4h6p99n6902"; depends=[AnnotationDbi gplots]; }; + MLSeq = derive2 { name="MLSeq"; version="2.22.0"; sha256="0vm4giqqp2iq1w40nkn4bjc81ppdhqhbxq6w6ps3i2rdzwcq49ir"; depends=[Biobase caret DESeq2 edgeR foreach ggplot2 limma pamr plyr sSeq SummarizedExperiment testthat VennDiagram xtable]; }; + MMDiff2 = derive2 { name="MMDiff2"; version="1.32.0"; sha256="0yamcgjb5k77pkv1b0bja5f2i7aqw12wpyppf1mw9s8mqfx3cl0y"; depends=[Biobase Biostrings BSgenome GenomicRanges ggplot2 locfit RColorBrewer Rsamtools S4Vectors shiny]; }; + MMUPHin = derive2 { name="MMUPHin"; version="1.18.1"; sha256="0wh998bjbf8zkfrzmrnm8dmm7960w5dnaq1yyc1hl105al0j33aj"; depends=[cowplot dplyr fpc ggplot2 igraph Maaslin2 metafor stringr tidyr]; }; + MODA = derive2 { name="MODA"; version="1.30.0"; sha256="1cx3jz8hw1zm68cay84gkxq9wlfwfdm9ms70af6hck4fl2spxj66"; depends=[AMOUNTAIN cluster dynamicTreeCut igraph RColorBrewer WGCNA]; }; + MOFA2 = derive2 { name="MOFA2"; version="1.14.0"; sha256="0sf0vibw44ildxf5rdkqjhw85awl5iz9f62j9z660lf3f8h5v5qq"; depends=[basilisk corrplot cowplot DelayedArray dplyr forcats ggplot2 ggrepel HDF5Array magrittr pheatmap RColorBrewer reshape2 reticulate rhdf5 Rtsne stringi tidyr uwot]; }; + MOGAMUN = derive2 { name="MOGAMUN"; version="1.14.0"; sha256="0l6pbn89a3pp157fbcwpkihmx869afi0qvm16yjac0mrhwspgbk8"; depends=[BiocParallel igraph RCy3 RUnit stringr]; }; + MOMA = derive2 { name="MOMA"; version="1.16.0"; sha256="1xbacfm9cikdhhb64l068hi4hcpqvh0g573cm8c3jxicxbgp3swv"; depends=[circlize cluster ComplexHeatmap dplyr ggplot2 magrittr MKmisc MultiAssayExperiment qvalue RColorBrewer readr reshape2 rlang stringr tibble tidyr]; }; + MOSim = derive2 { name="MOSim"; version="2.0.0"; sha256="0mj53b4m4f2bzspgypiymhk780dcmbrfdrdki46bqjnb124y0c2q"; depends=[cpp11 dplyr edgeR ggplot2 HiddenMarkov IRanges lazyeval matrixStats Rcpp rlang S4Vectors scran Seurat Signac stringi stringr zoo]; }; + MPFE = derive2 { name="MPFE"; version="1.40.0"; sha256="15sj1r9wa0irkym5z527r7s3krk4y5shgffv9w3fcdj90gqclc23"; depends=[]; }; + MPRAnalyze = derive2 { name="MPRAnalyze"; version="1.22.0"; sha256="1gswhf7k4y0g28wv3hjwcrg9ms1g4ky0rxdlzli1in8d4cly7154"; depends=[BiocParallel progress SummarizedExperiment]; }; + MSA2dist = derive2 { name="MSA2dist"; version="1.8.0"; sha256="0bb37mdw671cc7751wfdsslcaz04i3sbjdp3y11n7yl5pmkx1k6b"; depends=[ape Biostrings doParallel dplyr foreach GenomicRanges IRanges pwalign Rcpp RcppThread rlang seqinr stringi stringr tibble tidyr]; }; + MSPrep = derive2 { name="MSPrep"; version="1.14.0"; sha256="0856s9a268sv2ablqb6s5gc98dl5z171xik1nk7jpx5vdx9iwj5b"; depends=[crmn dplyr magrittr missForest pcaMethods preprocessCore rlang S4Vectors stringr SummarizedExperiment sva tibble tidyr VIM]; }; + MSnID = derive2 { name="MSnID"; version="1.38.0"; sha256="0misrm4x4z5h8dfwcrwi24nhcjslqvbyk5n7qz6kf2zcgcwq8q44"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics BiocStyle Biostrings data_table doParallel dplyr foreach ggplot2 iterators msmsTests MSnbase mzID mzR ProtGenerics purrr R_cache Rcpp reshape2 rlang RUnit stringr tibble xtable]; }; + MSnbase = derive2 { name="MSnbase"; version="2.30.1"; sha256="0cdvi2mjvhj0h8x2rh3kkzrdnmzhr7d9a41m21r6b843a0q7hp6f"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant MASS MsCoreUtils mzID mzR pcaMethods plyr ProtGenerics PSMatch Rcpp S4Vectors scales vsn]; }; + MSstats = derive2 { name="MSstats"; version="4.12.0"; sha256="0nrh0hjbsxmf390k5bnniichkwlw3scq8y90bw7hqv21k7wzwfvp"; depends=[checkmate data_table ggplot2 ggrepel gplots htmltools limma lme4 marray MASS MSstatsConvert plotly preprocessCore Rcpp RcppArmadillo statmod survival]; }; + MSstatsBig = derive2 { name="MSstatsBig"; version="1.2.0"; sha256="1az35hsgij1cgpp6pl198dmlw26ddc1npdzaa5g8mwmdijwl3jz1"; depends=[arrow DBI dplyr MSstats MSstatsConvert readr sparklyr]; }; + MSstatsConvert = derive2 { name="MSstatsConvert"; version="1.14.0"; sha256="1q2xwik74qdazqmbh5qqcy21s9nq77jjvrc9qhkh1f0iss0r6pzm"; depends=[checkmate data_table log4r stringi]; }; + MSstatsLOBD = derive2 { name="MSstatsLOBD"; version="1.12.0"; sha256="0jav2x8j07v4zmbwk89l85rycn7k9y0ifb07gzg64v0pkls4341s"; depends=[ggplot2 minpack_lm Rcpp]; }; + MSstatsLiP = derive2 { name="MSstatsLiP"; version="1.10.0"; sha256="1kpfybpzav4bvy3jb2p3ws899mifjr564jqsdy9s4vbk5pphm9j0"; depends=[Biostrings checkmate data_table dplyr factoextra ggplot2 ggpubr gridExtra MSstats MSstatsConvert MSstatsPTM purrr Rcpp scales stringr tibble tidyr tidyverse]; }; + MSstatsPTM = derive2 { name="MSstatsPTM"; version="2.6.0"; sha256="0ivcxd2awrswih6n7is7zkcfrqiihk998g081krcp25i832xfqvh"; depends=[Biostrings checkmate data_table dplyr ggplot2 ggrepel gridExtra MSstats MSstatsConvert MSstatsTMT Rcpp stringi stringr]; }; + MSstatsQC = derive2 { name="MSstatsQC"; version="2.22.0"; sha256="0pp813mx6kwmxyyi67qsak09k012nn05pv60ndx8x6dq9ph8aghn"; depends=[dplyr ggExtra ggplot2 MSnbase plotly qcmetrics]; }; + MSstatsQCgui = derive2 { name="MSstatsQCgui"; version="1.24.0"; sha256="0kjidspplam63367yc09a17a3gq52rbmfrcnaxnxpiwkl7mphzz0"; depends=[dplyr ggExtra gridExtra MSstatsQC plotly shiny]; }; + MSstatsShiny = derive2 { name="MSstatsShiny"; version="1.6.2"; sha256="0h79yy5b9n2kfpbc3fhfajfmrqdzghj3ycaparn1v1dzjmi87z9y"; depends=[data_table dplyr DT ggplot2 ggrepel gplots Hmisc htmltools marray mockery MSstats MSstatsConvert MSstatsPTM MSstatsTMT plotly readxl shiny shinyBS shinybusy shinyjs tidyr uuid]; }; + MSstatsTMT = derive2 { name="MSstatsTMT"; version="2.12.1"; sha256="03nnwh5qbr3wd942yj5xa2gd2bk28ncxq2dri3my5gwsrlfxfxpn"; depends=[checkmate data_table ggplot2 htmltools limma lme4 lmerTest MSstats MSstatsConvert plotly]; }; + MVCClass = derive2 { name="MVCClass"; version="1.78.0"; sha256="1wi6acw51q48v149l72b2pp0iyjrwq1bbmr53y3m609xfadg4qim"; depends=[]; }; + MWASTools = derive2 { name="MWASTools"; version="1.28.0"; sha256="1k72ycx0zlflcfpqapvh9m6mk3vc9wl0pbsi4jbcdigl6vx1zixv"; depends=[boot car ComplexHeatmap ggplot2 glm2 gridExtra igraph KEGGgraph KEGGREST ppcor qvalue RCurl SummarizedExperiment]; }; + Maaslin2 = derive2 { name="Maaslin2"; version="1.18.0"; sha256="0dl6s4lcd40nd7v0d3k3zn0mkm5rlzb8kf2cjxz298mgdif63xqh"; depends=[biglm car chemometrics cplm data_table dplyr edgeR ggplot2 glmmTMB hash lme4 lmerTest logging MASS metagenomeSeq optparse pbapply pcaPP pheatmap pscl robustbase tibble vegan]; }; + Macarron = derive2 { name="Macarron"; version="1.8.0"; sha256="18k6fxr4iihrxkraf2p01wmmkaahq95yb08bh4f8dw7ji3my50n7"; depends=[BiocParallel data_table DelayedArray dynamicTreeCut ff httr logging Maaslin2 plyr psych RJSONIO SummarizedExperiment WGCNA xml2]; }; + MantelCorr = derive2 { name="MantelCorr"; version="1.74.0"; sha256="0h1abssaf0c00lsqqm3l4bg0rdsjh3i8famn6hlrigaha62cry7k"; depends=[]; }; + MassArray = derive2 { name="MassArray"; version="1.56.0"; sha256="0xhq3gqx8h7ijfvji66zwrv6fl87mhdwc228nr3x82zh351gd229"; depends=[]; }; + MassSpecWavelet = derive2 { name="MassSpecWavelet"; version="1.70.0"; sha256="0ckvnah0ck5z6calgrwk0k3y1nxpcyn41y84kz5bypzr77x6ssj2"; depends=[]; }; + MatrixGenerics = derive2 { name="MatrixGenerics"; version="1.16.0"; sha256="1r7n5p89460h47mnfh190184dbcmrbj0j5d7dswkfwh6ixan3zyc"; depends=[matrixStats]; }; + MatrixQCvis = derive2 { name="MatrixQCvis"; version="1.12.0"; sha256="0hghmns8i1yhycr18yxp7b7knbdnf1f705z1pic1ql5llzsi8jzj"; depends=[ComplexHeatmap dplyr ExperimentHub ggplot2 Hmisc htmlwidgets impute imputeLCMD limma MASS pcaMethods plotly proDA rlang rmarkdown Rtsne shiny shinydashboard shinyhelper shinyjs SummarizedExperiment tibble tidyr umap UpSetR vsn]; }; + MatrixRider = derive2 { name="MatrixRider"; version="1.36.0"; sha256="1v1y4z79kb5a9g8sr1mwzc5i9nf7prk07dnyn88048ddd5il2xgw"; depends=[Biostrings IRanges S4Vectors TFBSTools XVector]; }; + MeSHDbi = derive2 { name="MeSHDbi"; version="1.40.0"; sha256="0d56i63gcl523715idlm6irspkz3p4xdca0brfys1f56pr55skmw"; depends=[AnnotationDbi Biobase RSQLite]; }; + MeasurementError_cor = derive2 { name="MeasurementError.cor"; version="1.76.0"; sha256="034n9dfk4a5k4z9g2f90a08rlgk7qgi4i6spp54azlw9gmx4amfs"; depends=[]; }; + Melissa = derive2 { name="Melissa"; version="1.20.0"; sha256="0aswg1balk65rsnxnsdn65x5l5g1dya7z2n8yqr7agzigdw62pdf"; depends=[assertthat BiocStyle BPRMeth cowplot data_table doParallel foreach GenomicRanges ggplot2 magrittr matrixcalc mclust MCMCpack mvtnorm ROCR truncnorm]; }; + Mergeomics = derive2 { name="Mergeomics"; version="1.32.0"; sha256="0n5mdnvqqixrrwn1ph89vah81l2afd7wsbsnh5mnhgmm50pjcg1b"; depends=[]; }; + MesKit = derive2 { name="MesKit"; version="1.14.0"; sha256="0r6a200zyp97vjdk78fch5xmvqbqjmhf9n7cc9y911ifll7md35a"; depends=[AnnotationDbi ape Biostrings circlize ComplexHeatmap cowplot data_table dplyr ggplot2 ggrepel ggridges IRanges mclust phangorn pracma RColorBrewer S4Vectors tidyr]; }; + MetCirc = derive2 { name="MetCirc"; version="1.34.0"; sha256="1wkmhlxg3gxfxskhhxrm65y6vriggs34523adrsghx1ra0wgyjvf"; depends=[amap circlize ggplot2 MsCoreUtils S4Vectors scales shiny Spectra]; }; + MetID = derive2 { name="MetID"; version="1.22.0"; sha256="0i6jpn1q0632klpa6817v9xs2kkdvsajhjv6h1p2f6jdx0smsd64"; depends=[ChemmineR devtools igraph Matrix stringr]; }; + MetNet = derive2 { name="MetNet"; version="1.22.0"; sha256="1dpp9z9h3dkbx9k0hxg5dr9178sbs095kyr2ka5sihxm2in0prrg"; depends=[BiocParallel bnlearn corpcor dplyr GeneNet GENIE3 ggplot2 parmigene psych rlang S4Vectors stabs SummarizedExperiment tibble tidyr]; }; + MetaCyto = derive2 { name="MetaCyto"; version="1.26.0"; sha256="15yd35ql64ca9ixv6rcq9v6gaaxis9nzx4q2jdij3facrb2ryyfk"; depends=[cluster fastcluster flowCore FlowSOM ggplot2 metafor tidyr]; }; + MetaNeighbor = derive2 { name="MetaNeighbor"; version="1.24.0"; sha256="0sz15njb0y9vcmbv89k3x2sw4px8nmy3qhqkvyl69kxlcqdicgxi"; depends=[beanplot dplyr ggplot2 gplots igraph Matrix matrixStats RColorBrewer SingleCellExperiment SummarizedExperiment tibble tidyr]; }; + MetaPhOR = derive2 { name="MetaPhOR"; version="1.6.0"; sha256="0r3zqb7rmw5fnwm6hkpy22gndpn4jd24471acqfsi3a894g0868p"; depends=[clusterProfiler ggplot2 ggrepel pheatmap RCy3 RecordLinkage stringr]; }; + MetaboAnnotation = derive2 { name="MetaboAnnotation"; version="1.8.1"; sha256="0lsrhyyqsdz27mc6vl0aj78bdj3xh5i3h3dsg9smkhg2m22h3sdf"; depends=[AnnotationHub BiocGenerics BiocParallel CompoundDb MetaboCoreUtils MsCoreUtils ProtGenerics QFeatures S4Vectors Spectra SummarizedExperiment]; }; + MetaboCoreUtils = derive2 { name="MetaboCoreUtils"; version="1.12.0"; sha256="1y5lq1x60pcvxsl8dim5plzd3y4bqjkcam5hv9614xw0sr4h0r04"; depends=[BiocParallel MsCoreUtils]; }; + MetaboSignal = derive2 { name="MetaboSignal"; version="1.34.0"; sha256="0ldi6qs0hfnwlpvwc0v0yn3j6gms4kgays8f5fap8vj8nw2gljbj"; depends=[AnnotationDbi biomaRt EnsDb_Hsapiens_v75 hpar igraph KEGGgraph KEGGREST MWASTools mygene org_Hs_eg_db RCurl]; }; + MethPed = derive2 { name="MethPed"; version="1.32.0"; sha256="13hwdxvmczzr77572pws58590lk09z6sda8144qxlljy4y5ii7zw"; depends=[Biobase randomForest]; }; + MethReg = derive2 { name="MethReg"; version="1.14.0"; sha256="1fzbrp09d57s2zvxl7jsc8dqwchz43xl0vnxkj2r0q0knlpsbbr2"; depends=[AnnotationHub DelayedArray dplyr ExperimentHub GenomicRanges ggplot2 ggpubr IRanges JASPAR2024 MASS Matrix openxlsx plyr progress pscl readr rlang RSQLite S4Vectors sesame sesameData sfsmisc stringr SummarizedExperiment TFBSTools tibble tidyr]; }; + MethTargetedNGS = derive2 { name="MethTargetedNGS"; version="1.36.0"; sha256="15bw9bxg99bfmwgfi45qgrp5dk15k44i0s6jp34kwnxkp18010ab"; depends=[Biostrings gplots pwalign seqinr stringr]; }; + MethylAid = derive2 { name="MethylAid"; version="1.38.0"; sha256="084mnllaj6qp5ai5bmj6wgc90bs270qbzl60sch1f863x8fv9lzr"; depends=[Biobase BiocGenerics BiocParallel ggplot2 gridBase hexbin matrixStats minfi RColorBrewer shiny SummarizedExperiment]; }; + MethylMix = derive2 { name="MethylMix"; version="2.34.0"; sha256="1mdhqqlbkh24bqz0bxvzih2cnl38nyacrfhsz8mq8ky2j5rsrbg0"; depends=[data_table digest foreach ggplot2 impute limma R_matlab RColorBrewer RCurl RPMM]; }; + MethylSeekR = derive2 { name="MethylSeekR"; version="1.44.0"; sha256="10b3m0d5z426p74x4hjg4imqg8iic0xjjnjcllwphy0ylk3cpzd5"; depends=[BSgenome geneplotter GenomicRanges IRanges mhsmm rtracklayer]; }; + Mfuzz = derive2 { name="Mfuzz"; version="2.64.0"; sha256="00sx63bg5qw22vw0yw3syhyl5ffjrqvf81b9ksgw2p0z3yiiss5h"; depends=[Biobase e1071 tkWidgets]; }; + MiChip = derive2 { name="MiChip"; version="1.58.0"; sha256="0mmb63h29l6xhwwxxlnz6a0p04wsxlskagih11rwmwnwm0blv68k"; depends=[Biobase]; }; + MiPP = derive2 { name="MiPP"; version="1.76.0"; sha256="12wk4kk7qbba3681ikldivs3np9qvvl0mivqds0dd6l52v1ngj9p"; depends=[Biobase e1071 MASS]; }; + MiRaGE = derive2 { name="MiRaGE"; version="1.46.0"; sha256="17c3rrq9h2mlhqjcjiyzg88d1giks9iq2vdlsvv6fg9cl4wqpvg1"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager S4Vectors]; }; + MicrobiomeProfiler = derive2 { name="MicrobiomeProfiler"; version="1.10.0"; sha256="1xz2s2alz61s5hp5fq42m5n3bby89lyp5mr7pgav8xkyiglk471f"; depends=[clusterProfiler config DT enrichplot ggplot2 golem gson htmltools magrittr shiny shinycustomloader shinyWidgets]; }; + MicrobiotaProcess = derive2 { name="MicrobiotaProcess"; version="1.16.0"; sha256="0jqvxr77c9karq8wm53khs47vwrrvy86q6sl0dpsbydfmjw0blln"; depends=[ape Biostrings cli coin data_table dplyr dtplyr foreach ggfun ggplot2 ggrepel ggsignif ggstar ggtree ggtreeExtra magrittr MASS patchwork pillar plyr rlang SummarizedExperiment tibble tidyr tidyselect tidytree treeio vegan zoo]; }; + MineICA = derive2 { name="MineICA"; version="1.44.0"; sha256="1qzqfnrf23lrlxmds8hjblj169sylq1m9h07vwlz5zik5mxj6y90"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi lumiHumanAll_db marray mclust plyr RColorBrewer Rgraphviz scales xtable]; }; + MinimumDistance = derive2 { name="MinimumDistance"; version="1.48.0"; sha256="1pqf2q5hxjb1dwg981aldl0sw10f86yszp6z511vzx1y70ca6j3h"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; }; + ModCon = derive2 { name="ModCon"; version="1.12.0"; sha256="06v2ka7rhiqnjdgb7ky6ps2b90j29y1yqsvkk24a6nsd2q8gpkil"; depends=[data_table]; }; + Modstrings = derive2 { name="Modstrings"; version="1.20.0"; sha256="0yc8gsgxlww2g9z1m6jl02aqmama10fkr2mvibvdi01s5pqwdbky"; depends=[BiocGenerics Biostrings crayon GenomicRanges IRanges S4Vectors stringi stringr XVector]; }; + MoleculeExperiment = derive2 { name="MoleculeExperiment"; version="1.4.1"; sha256="0w539058lm99z53lkjf9ljk1dr4fp150a9cwa9s9xrax90wpmy6j"; depends=[BiocParallel cli data_table dplyr EBImage ggplot2 magrittr Matrix purrr rhdf5 rjson rlang S4Vectors SpatialExperiment terra]; }; + Moonlight2R = derive2 { name="Moonlight2R"; version="1.2.0"; sha256="0ff37hjp3llf875z4wym60vanda6gbysqmcp90dcbl33bx0fynja"; depends=[AnnotationHub Biobase BiocGenerics circlize clusterProfiler ComplexHeatmap doParallel DOSE dplyr easyPubMed EpiMix ExperimentHub foreach fuzzyjoin GenomicRanges GEOquery ggplot2 gplots HiveR magrittr org_Hs_eg_db parmigene purrr qpdf randomForest RColorBrewer readr RISmed rtracklayer seqminer stringr tibble tidyHeatmap tidyr]; }; + MoonlightR = derive2 { name="MoonlightR"; version="1.30.0"; sha256="0jhc7y01qrz3cg2jnjqwgi5cgrh6616q9k3f3hldkq0x6z0z1vwn"; depends=[Biobase circlize clusterProfiler doParallel DOSE foreach GEOquery gplots HiveR limma parmigene randomForest RColorBrewer RISmed SummarizedExperiment TCGAbiolinks]; }; + Motif2Site = derive2 { name="Motif2Site"; version="1.8.0"; sha256="03rjhrxi016q0k7dzbfwr192sgc6z5kjyqdd6qzdajkpgq6dpi2m"; depends=[BiocGenerics Biostrings BSgenome edgeR GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS mixtools S4Vectors]; }; + MotifDb = derive2 { name="MotifDb"; version="1.46.0"; sha256="1m8y76gg80625xz9g9101mfq19glk37p792yzz46807f7g6m8zbh"; depends=[BiocGenerics Biostrings GenomicRanges IRanges rtracklayer S4Vectors splitstackshape]; }; + MouseFM = derive2 { name="MouseFM"; version="1.14.0"; sha256="0vwccf4fj664vbl0ggps51rac42j7xs5m33szhwdqpik6p2hyz7j"; depends=[biomaRt curl data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gtools httr IRanges jsonlite reshape2 rlist scales tidyr]; }; + MsBackendMassbank = derive2 { name="MsBackendMassbank"; version="1.12.0"; sha256="0sj378b6jphfamr3850k8f5f22mr50i9r1d94jz2js7y1az10rim"; depends=[BiocParallel DBI IRanges MsCoreUtils ProtGenerics S4Vectors Spectra]; }; + MsBackendMgf = derive2 { name="MsBackendMgf"; version="1.12.0"; sha256="1rphxis1jxd6295sab0lyx96h3rflwmrz5x1iqzn6pfyzgcr67rz"; depends=[BiocParallel IRanges MsCoreUtils ProtGenerics S4Vectors Spectra]; }; + MsBackendMsp = derive2 { name="MsBackendMsp"; version="1.8.0"; sha256="1y80r12xsiw678mkjq5x9j9yp4l36w1hv9qxlac6bbhsp4kpbwi4"; depends=[BiocParallel IRanges MsCoreUtils ProtGenerics S4Vectors Spectra]; }; + MsBackendRawFileReader = derive2 { name="MsBackendRawFileReader"; version="1.10.0"; sha256="17xnbhnvz28ksfw51aba9p9wl5q0y7wl88yxsdhjwc58f3h8a1rn"; depends=[BiocParallel IRanges MsCoreUtils ProtGenerics rawrr S4Vectors Spectra]; }; + MsBackendSql = derive2 { name="MsBackendSql"; version="1.4.0"; sha256="1ng4ns03a8lbb63rczcl1j9c780vqnhc3plj5v3602xmnrxpadrl"; depends=[BiocGenerics BiocParallel data_table DBI IRanges MsCoreUtils progress ProtGenerics S4Vectors Spectra]; }; + MsCoreUtils = derive2 { name="MsCoreUtils"; version="1.16.0"; sha256="18m6qbj43p6zsrsdp7in15z3hcnqzqcxbk24qvbq7328rrhdk84a"; depends=[clue MASS Rcpp S4Vectors]; }; + MsDataHub = derive2 { name="MsDataHub"; version="1.4.0"; sha256="1kxcf7pz8vfidzjqb0czc9znml5nj4bqrbiwrx2j13igrf5v6jnh"; depends=[ExperimentHub]; }; + MsExperiment = derive2 { name="MsExperiment"; version="1.6.0"; sha256="0dxv3jw5aj1i73vqrp3c031pj26i7rp0q2zs4nq3x1vni349506d"; depends=[BiocGenerics DBI IRanges ProtGenerics QFeatures S4Vectors Spectra SummarizedExperiment]; }; + MsFeatures = derive2 { name="MsFeatures"; version="1.12.0"; sha256="1prn45vlacj69388psimy0w05a84y8sdry6678pz611sd0ks1gka"; depends=[MsCoreUtils ProtGenerics SummarizedExperiment]; }; + MsQuality = derive2 { name="MsQuality"; version="1.4.0"; sha256="1khpjzzrrd2b7ngwq43y3sgndmrr6l8f504lyakr46xr1vyzppsl"; depends=[BiocParallel ggplot2 htmlwidgets msdata MsExperiment plotly ProtGenerics rlang rmzqc shiny shinydashboard Spectra stringr tibble tidyr]; }; + MuData = derive2 { name="MuData"; version="1.8.0"; sha256="0kjin6cfw9aipghd0imi2play19czplwcz2gi5akv6gk9wy98k8x"; depends=[DelayedArray Matrix MultiAssayExperiment rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; }; + Mulcom = derive2 { name="Mulcom"; version="1.54.0"; sha256="1sb6g08k1wlnjiiw9a7hm34izbnh8ar1mh6vxc0jzkwk6522nva2"; depends=[Biobase fields]; }; + MultiAssayExperiment = derive2 { name="MultiAssayExperiment"; version="1.30.2"; sha256="1j74ql0lz2xf0jsf4cjfapdmxbf6hb22699d3dyj8gwd1s92myjz"; depends=[Biobase BiocBaseUtils BiocGenerics DelayedArray GenomicRanges IRanges S4Vectors SummarizedExperiment tidyr]; }; + MultiBaC = derive2 { name="MultiBaC"; version="1.14.0"; sha256="0m08620sii9181y0vlcrw9nbcnp4vnjjxvp96iqlgg5fsb23wbl7"; depends=[ggplot2 Matrix MultiAssayExperiment pcaMethods plotrix ropls]; }; + MultiDataSet = derive2 { name="MultiDataSet"; version="1.32.0"; sha256="1y1j5svi52cvixjsn13122kvd0z0c7zfki3p6rr8wjd5w7riiyqw"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggrepel IRanges limma qqman S4Vectors SummarizedExperiment]; }; + MultiMed = derive2 { name="MultiMed"; version="2.26.0"; sha256="03qcqzkh5jiy46613g29bs7dipgzzparwdcllw1lwssh4y8fvwc0"; depends=[]; }; + MultiRNAflow = derive2 { name="MultiRNAflow"; version="1.2.0"; sha256="0i7zs0gd8p927zcdsx85wdk3wi4ywg4s4y3ichqqidqs01hdxccd"; depends=[Biobase ComplexHeatmap DESeq2 factoextra FactoMineR ggalluvial ggplot2 ggplotify ggrepel gprofiler2 Mfuzz plot3D plot3Drgl reshape2 S4Vectors SummarizedExperiment UpSetR]; }; + MultimodalExperiment = derive2 { name="MultimodalExperiment"; version="1.4.0"; sha256="0zik59sh26ycbsagcvwzhb9g4aqvkbygigpzy8d9i0gss0rvvljp"; depends=[BiocGenerics IRanges MultiAssayExperiment S4Vectors]; }; + MungeSumstats = derive2 { name="MungeSumstats"; version="1.12.0"; sha256="16msjxxmnzycj2nny35lvwvlxw1n4ga8g1wn4fcfv7xg4ad6vy4v"; depends=[Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicRanges googleAuthR httr IRanges jsonlite magrittr R_utils RCurl rtracklayer stringr VariantAnnotation]; }; + MutationalPatterns = derive2 { name="MutationalPatterns"; version="3.14.0"; sha256="0smf4l023ckwsm5ckrqqw7kjyi1awp378mzhab7v8nk9n5smsj61"; depends=[BiocGenerics Biostrings BSgenome cowplot dplyr GenomeInfoDb GenomicRanges ggalluvial ggdendro ggplot2 IRanges magrittr NMF pracma purrr RColorBrewer S4Vectors stringr tibble tidyr VariantAnnotation]; }; + NADfinder = derive2 { name="NADfinder"; version="1.28.0"; sha256="18bq7jf7f89263s4f4ib3qzlpwxsp181zjjm0cblkhjs7lw8p2zh"; depends=[ATACseqQC baseline BiocGenerics corrplot csaw EmpiricalBrownsMethod GenomeInfoDb GenomicAlignments GenomicRanges IRanges limma metap Rsamtools rtracklayer S4Vectors signal SummarizedExperiment trackViewer]; }; + NBAMSeq = derive2 { name="NBAMSeq"; version="1.20.0"; sha256="1iglbxv7wcgn7lwah8jd1q7gsrqjr3874nivl1msla35hkqw4v9a"; depends=[BiocParallel DESeq2 genefilter mgcv S4Vectors SummarizedExperiment]; }; + NCIgraph = derive2 { name="NCIgraph"; version="1.52.0"; sha256="16kkg568hdjsn4jq9hd9gl1n31wavshn79bpwhg5jxci288zgai0"; depends=[graph KEGGgraph R_oo RBGL RCy3]; }; + NOISeq = derive2 { name="NOISeq"; version="2.48.0"; sha256="1aph4phg58f4kpgavrxnn6dzh3lgms8sbjvip4f3gn8xs0p01mbz"; depends=[Biobase Matrix]; }; + NPARC = derive2 { name="NPARC"; version="1.16.0"; sha256="0giq5nxqnsqppz12adln7kvdb8lifch57wg6avdl88xrdzpl3vfw"; depends=[BiocParallel broom dplyr magrittr MASS rlang tidyr]; }; + NTW = derive2 { name="NTW"; version="1.54.0"; sha256="1knkqrs3rlhl9qvp6670hc7qhgyi6pmcs47xcivpn2jk6ss00xhk"; depends=[mvtnorm]; }; + NanoMethViz = derive2 { name="NanoMethViz"; version="3.0.2"; sha256="0nlbkikmxdq08m24sch8cy10m63v33536p5rx1zy5c4f4pa86yrw"; depends=[AnnotationDbi assertthat BiocSingular Biostrings bsseq cli cpp11 data_table dbscan dplyr e1071 forcats fs GenomicRanges ggplot2 ggrastr glue IRanges limma patchwork purrr R_utils Rcpp readr rlang Rsamtools S4Vectors scales scico stringr SummarizedExperiment tibble tidyr withr zlibbioc]; }; + NanoStringDiff = derive2 { name="NanoStringDiff"; version="1.34.0"; sha256="0rasmzc12xl6mh9l2989wgp9q30665iqqgxr1fy6r57j7hixwbc1"; depends=[Biobase matrixStats Rcpp]; }; + NanoStringNCTools = derive2 { name="NanoStringNCTools"; version="1.12.0"; sha256="1n1zc99v5xzd89q512v24wa7gmbgdp8g9aixvh6cjismah0vpgjr"; depends=[Biobase BiocGenerics Biostrings ggbeeswarm ggiraph ggplot2 ggthemes IRanges pheatmap RColorBrewer S4Vectors]; }; + NanoTube = derive2 { name="NanoTube"; version="1.10.0"; sha256="1i5fs2lkqmyl0hb1s6f56z3wmwhmvw2mkygl3ibn0qwfh460l4f1"; depends=[Biobase fgsea ggplot2 limma reshape]; }; + Nebulosa = derive2 { name="Nebulosa"; version="1.14.0"; sha256="0m5z6rribsrk9mzcksjh0nmpf4d0x0hn8jd80h0hj0hj8sj1ifgv"; depends=[ggplot2 ggrastr ks Matrix patchwork SeuratObject SingleCellExperiment SummarizedExperiment]; }; + NetActivity = derive2 { name="NetActivity"; version="1.6.0"; sha256="0hssxa9i5c090929mnjs7nqn56fmg7qhq0iknfrl9d0wvpibm3bh"; depends=[airway DelayedArray DelayedMatrixStats DESeq2 NetActivityData SummarizedExperiment]; }; + NetPathMiner = derive2 { name="NetPathMiner"; version="1.40.0"; sha256="1fv4ijiksp2ff5sxjgp1bfzxfcqr853nrsdgfn0i8zqz9ba20a6p"; depends=[igraph]; }; + NetSAM = derive2 { name="NetSAM"; version="1.44.0"; sha256="07l5cgl72mkh3j96lciwalsb0ps0bs7rfxzm78m5279palawf6vb"; depends=[AnnotationDbi biomaRt DBI doParallel foreach GO_db igraph R2HTML seriation survival WGCNA]; }; + NeuCA = derive2 { name="NeuCA"; version="1.10.0"; sha256="0k5bqdrja3x238fyrd7dm5jm94igh25b0ipb2zj6scpa4m15n67l"; depends=[e1071 kableExtra keras limma SingleCellExperiment]; }; + NewWave = derive2 { name="NewWave"; version="1.14.0"; sha256="03m6dd0p2d542k36jwvz9ik8cddw1q3dz9ghqy0w1dbf685r0kf0"; depends=[BiocSingular DelayedArray irlba Matrix SharedObject SingleCellExperiment SummarizedExperiment]; }; + NoRCE = derive2 { name="NoRCE"; version="1.16.0"; sha256="0di23zmjfba4nmbbkcn2xhqamxxn4hfkhyh3skc46b66rl1yjy3n"; depends=[AnnotationDbi biomaRt DBI dbplyr dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 GO_db igraph IRanges KEGGREST png RCurl reactome_db readr reshape2 RSQLite rtracklayer rWikiPathways S4Vectors stringr SummarizedExperiment tidyr zlibbioc]; }; + NormalyzerDE = derive2 { name="NormalyzerDE"; version="1.22.0"; sha256="1kiwyf8fkdp7bml4b5f32schyl0s5c0b1ag4g826rakh487sb69b"; depends=[ape Biobase car ggforce ggplot2 limma MASS matrixStats preprocessCore SummarizedExperiment vsn]; }; + NormqPCR = derive2 { name="NormqPCR"; version="1.50.0"; sha256="1fl7qm6qmzxvv41qd1y8ds3r6dqk39rqgh6sl8imbggmnpb27j9h"; depends=[Biobase qpcR RColorBrewer ReadqPCR]; }; + NuPoP = derive2 { name="NuPoP"; version="2.12.0"; sha256="1w6q7ms57wixw5w3fx74qc6l8mgcklysqq1s6jg69mipwgch62hm"; depends=[]; }; + OCplus = derive2 { name="OCplus"; version="1.78.0"; sha256="0bqa1rml6vj6sw27pxlhjjsfx2cyi2lv6v4hykdcc8kgh8a1r8dm"; depends=[interp multtest]; }; + OGRE = derive2 { name="OGRE"; version="1.8.0"; sha256="07xkprp1hjhavj9d360yhybpq9ghz0wxwaxlicpidm788nvksxqv"; depends=[AnnotationHub assertthat data_table DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges rtracklayer S4Vectors shiny shinyBS shinydashboard shinyFiles tidyr]; }; + OLIN = derive2 { name="OLIN"; version="1.82.0"; sha256="05s28by46adrizrglfsr9m26jiygkyp0dabdr62nasjmqzidwf80"; depends=[limma locfit marray]; }; + OLINgui = derive2 { name="OLINgui"; version="1.78.0"; sha256="0fcpy0g95l0h2id13dra46zyphyjdh2m7gw9i38i5jnr4arhy95z"; depends=[marray OLIN tkWidgets widgetTools]; }; + OMICsPCA = derive2 { name="OMICsPCA"; version="1.22.0"; sha256="0m5b6msnkvvv0lpj8zm976yqa5pd2vzkhpgzx58f95dbcaxpxflq"; depends=[cluster clValid corrplot cowplot data_table factoextra FactoMineR fpc GenomeInfoDb ggplot2 HelloRanges IRanges kableExtra magick MASS MultiAssayExperiment NbClust OMICsPCAdata pdftools PerformanceAnalytics reshape2 rgl rmarkdown rtracklayer tidyr]; }; + OPWeight = derive2 { name="OPWeight"; version="1.26.0"; sha256="11lrks7wrvzi3i0f1hnky386x60j5vnz8i73dng1fzb64n41mla8"; depends=[MASS qvalue tibble]; }; + ORFhunteR = derive2 { name="ORFhunteR"; version="1.12.0"; sha256="0ahs8j1qlfxblkbvxfd9836l72icr8lqaywpih9s4slx6j38l53p"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg38 data_table Peptides randomForest Rcpp rtracklayer stringr xfun]; }; + ORFik = derive2 { name="ORFik"; version="1.24.0"; sha256="0cm1rb4l0kciw8h1555qbixh9krwdnbgbvrb4dq753yjc3wdizfx"; depends=[AnnotationDbi BiocFileCache BiocGenerics BiocParallel biomaRt biomartr Biostrings BSgenome cowplot curl data_table DESeq2 downloader fst GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gridExtra httr IRanges jsonlite R_utils Rcpp RCurl Rsamtools rtracklayer S4Vectors SummarizedExperiment txdbmaker withr XML xml2]; }; + OSAT = derive2 { name="OSAT"; version="1.52.0"; sha256="0bap6n61wzrkbl1cvlfwrnzgvdgkfzfa37fb5r22ynyv847jhl7n"; depends=[]; }; + OTUbase = derive2 { name="OTUbase"; version="1.54.0"; sha256="02hbz9xhhmggbvkgc41s91fwd9xr7li0215mn1axbfcr7dxppziq"; depends=[Biobase Biostrings IRanges S4Vectors ShortRead vegan]; }; + OUTRIDER = derive2 { name="OUTRIDER"; version="1.22.0"; sha256="1zdv48ms62sy6pv24xnx5jf0286dr68zglckl38na2gvqymn8zj4"; depends=[BBmisc BiocGenerics BiocParallel data_table DESeq2 generics GenomicFeatures GenomicRanges ggplot2 ggrepel heatmaply IRanges matrixStats pcaMethods pheatmap plotly plyr PRROC RColorBrewer Rcpp RcppArmadillo reshape2 S4Vectors scales SummarizedExperiment txdbmaker]; }; + OVESEG = derive2 { name="OVESEG"; version="1.20.0"; sha256="0bj2d8i5b9y3zrcpm7qapdywd1s3zgqiikz4by1l7832z7r2imyx"; depends=[BiocParallel fdrtool limma Rcpp SummarizedExperiment]; }; + OmaDB = derive2 { name="OmaDB"; version="2.20.0"; sha256="093hqayqa0gb3m6yckqa75i9ha9laxlkpjj4y64nzgja1ny2g17b"; depends=[ape Biostrings GenomicRanges httr IRanges jsonlite plyr topGO]; }; + OmicCircos = derive2 { name="OmicCircos"; version="1.42.0"; sha256="0iqq9ds69vlm7fhhd72cvnj4pg07g6c2rkhvbbl6r1w8z33b26hs"; depends=[GenomicRanges]; }; + Omixer = derive2 { name="Omixer"; version="1.14.0"; sha256="1y87kb08syq45amm8cxxp2sjfi24isl4f0cl8ik0qisbm9ycw09k"; depends=[dplyr forcats ggplot2 gridExtra magrittr readr stringr tibble tidyselect]; }; + OmnipathR = derive2 { name="OmnipathR"; version="3.11.10"; sha256="1izy0ycrvac0k67dxq8879rbdghkrczd3s2g5v607js7bmfxybjz"; depends=[checkmate crayon curl digest dplyr httr igraph jsonlite later logger lubridate magrittr progress purrr rappdirs readr readxl rlang rmarkdown rvest stringi stringr tibble tidyr tidyselect withr xml2 yaml]; }; + OncoScore = derive2 { name="OncoScore"; version="1.32.0"; sha256="1n7rlng6jqrxsas2zs94jfmgwgs6yaxavn14q112qinlmjxcdfxp"; depends=[biomaRt]; }; + OncoSimulR = derive2 { name="OncoSimulR"; version="4.6.0"; sha256="1j7d7ajlalhiwn12kpbagx8f0gnfsals4p5bkiik7a5ybwann33r"; depends=[car data_table dplyr ggplot2 ggrepel graph gtools igraph RColorBrewer Rcpp Rgraphviz smatr stringr]; }; + OpenStats = derive2 { name="OpenStats"; version="1.16.0"; sha256="1hxazy0rf0rvvr1ivw33fi72099x3blzzzwymckxhqskmsj52120"; depends=[AICcmodavg car Hmisc jsonlite knitr MASS nlme rlist summarytools]; }; + OrderedList = derive2 { name="OrderedList"; version="1.76.0"; sha256="0g604sdjwz3p5r95slp98a87sb3clinpwj76xbrdmahbjcz1gm6s"; depends=[Biobase twilight]; }; + Organism_dplyr = derive2 { name="Organism.dplyr"; version="1.32.0"; sha256="03z5pyqbaxwyrq5m858c8k69fwvclq98ksr84dc4m7r8lzz2hfxx"; depends=[AnnotationDbi AnnotationFilter BiocFileCache DBI dbplyr dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges rlang RSQLite S4Vectors tibble]; }; + OrganismDbi = derive2 { name="OrganismDbi"; version="1.46.0"; sha256="1cfh632rpmklmyd5cibwiy0i2pk2kk2m39g8mq5sxfwd2am4r0jk"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager DBI GenomicFeatures GenomicRanges graph IRanges RBGL S4Vectors txdbmaker]; }; + Oscope = derive2 { name="Oscope"; version="1.34.0"; sha256="16d2ngakdg73rdx0bf1pz3z1n8npjzl3b7dn94g9zbayw4vp3x5z"; depends=[BiocParallel cluster EBSeq testthat]; }; + OutSplice = derive2 { name="OutSplice"; version="1.4.0"; sha256="1kln52s2a0icvsna2ip08gsmggbbp8arj4mnpaj068ff6maa4hy6"; depends=[AnnotationDbi GenomicFeatures GenomicRanges IRanges org_Hs_eg_db S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + PAA = derive2 { name="PAA"; version="1.38.0"; sha256="1afkvcb4d5iqzmn1nk51kn9xmwpbps00ymarsj3bc7zlf9aani4c"; depends=[e1071 gplots gtools limma MASS mRMRe randomForest Rcpp ROCR sva]; }; + PADOG = derive2 { name="PADOG"; version="1.46.0"; sha256="0rm8zyvgipb22z47nxyalfpdww8c7360zbmx4n7g3lnd2v8csgks"; depends=[AnnotationDbi Biobase doRNG foreach GSA hgu133a_db hgu133plus2_db KEGGdzPathwaysGEO KEGGREST limma nlme]; }; + PAIRADISE = derive2 { name="PAIRADISE"; version="1.20.0"; sha256="1dj5rx6jhcr3k9szhvaqc1savfbpqbm9q4i6n18mj23wzvvqhrp4"; depends=[abind BiocParallel nloptr S4Vectors SummarizedExperiment]; }; + PANR = derive2 { name="PANR"; version="1.50.0"; sha256="14s6ldpxvzkxh356s5i40sx4x286g81qjyfsd2ax4y32kk7qdb7r"; depends=[igraph MASS pvclust RedeR]; }; + PAST = derive2 { name="PAST"; version="1.20.0"; sha256="01d7lw7x0wfszpi9lnq9alpba3d54z6lcai4fpdn4y53diamaygy"; depends=[doParallel dplyr foreach GenomicRanges ggplot2 iterators qvalue rlang rtracklayer S4Vectors]; }; + PCAN = derive2 { name="PCAN"; version="1.32.0"; sha256="1iawwvvm55fkipmkfwq64s5lbzxk2l229x3idzb1gvvjrkqk9lb7"; depends=[BiocParallel]; }; + PCAtools = derive2 { name="PCAtools"; version="2.16.0"; sha256="04a1fvwgqxzf7992lyh9qzz2z2fgmfwfjvpw5xr21pcrpas57l2r"; depends=[beachmat BH BiocParallel BiocSingular cowplot DelayedArray DelayedMatrixStats dqrng ggplot2 ggrepel lattice Matrix Rcpp reshape2]; }; + PDATK = derive2 { name="PDATK"; version="1.12.0"; sha256="079gdwh9m90r5b0p0szqv222sgdmjr6s3sz19l5xz0435r7h53nv"; depends=[BiocGenerics BiocParallel caret clusterRepro ConsensusClusterPlus CoreGx data_table dplyr genefu ggplot2 ggplotify igraph MatrixGenerics matrixStats MultiAssayExperiment piano plyr pROC RColorBrewer reportROC rlang S4Vectors scales SummarizedExperiment survcomp survival survminer switchBox verification]; }; + PECA = derive2 { name="PECA"; version="1.40.0"; sha256="0vx17yhls9ccmp0mns7w89dq49d3alqnzxvq3kvhjrdxnhgdn5d1"; depends=[affy aroma_affymetrix aroma_core genefilter limma preprocessCore ROTS]; }; + PICS = derive2 { name="PICS"; version="2.48.0"; sha256="16vf27fjrvmhfjndn3d706w6a3fd10nsmg6zmj1cch13c863xr13"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools]; }; + PING = derive2 { name="PING"; version="2.48.0"; sha256="1r09afnm6m9s9z7f0g6wsm677pc681j985psddzgqfmcdwbz75i3"; depends=[BiocGenerics BSgenome fda GenomicRanges Gviz IRanges PICS S4Vectors]; }; + PIPETS = derive2 { name="PIPETS"; version="1.0.0"; sha256="12cbjmdgbjif3kjm9km55nvnb0srw8nzcf3x3gw86v1wi718jzv7"; depends=[BiocGenerics dplyr GenomicRanges]; }; + PIUMA = derive2 { name="PIUMA"; version="1.0.0"; sha256="10b8d8525pz7bl8kg5ga0ca2ngns7g9ik2grhvx920mza7pail46"; depends=[cluster dbscan ggplot2 Hmisc igraph kernlab patchwork scales SummarizedExperiment tsne umap vegan]; }; + PLPE = derive2 { name="PLPE"; version="1.64.0"; sha256="06g8qrxmd29f8skzll3k5lz68j97466n1wpv7qd2ibpl4hi6zyg0"; depends=[Biobase LPE MASS]; }; + PLSDAbatch = derive2 { name="PLSDAbatch"; version="1.0.0"; sha256="15zaxr8qv5rp04r8430bl8llkdx4vhwkjn8bl8a8sv6q39vvqvys"; depends=[Biobase BiocStyle ggplot2 ggpubr gridExtra lmerTest mixOmics performance pheatmap Rdpack scales TreeSummarizedExperiment vegan]; }; + POMA = derive2 { name="POMA"; version="1.14.0"; sha256="1g9xsmg3zv5h7l2wxk4zm4fsihzah8phg33p2hhqbinzkzk6pbkw"; depends=[broom caret ComplexHeatmap dbscan DESeq2 dplyr FSA ggplot2 ggrepel glmnet impute janitor limma lme4 magrittr MASS mixOmics randomForest RankProd rlang SummarizedExperiment sva tibble tidyr uwot vegan]; }; + POWSC = derive2 { name="POWSC"; version="1.12.0"; sha256="01jh4lhipkj5iga3vp0m42klpi8160mbzsqb5b029h7sil8n3w94"; depends=[Biobase ggplot2 limma MAST pheatmap RColorBrewer SingleCellExperiment SummarizedExperiment]; }; + PPInfer = derive2 { name="PPInfer"; version="1.30.0"; sha256="1b5x9z2w9vpnkbmgh05lxpg1pkjhxnsxaz86ma018czicarxqcx3"; depends=[biomaRt fgsea ggplot2 httr igraph kernlab STRINGdb yeastExpData]; }; + PREDA = derive2 { name="PREDA"; version="1.50.0"; sha256="17xcaw5spcl41dgilpx6cq9df1zzzrk4x6xaxpa5pmmfn7gfk4zv"; depends=[annotate Biobase lokern multtest]; }; + PROMISE = derive2 { name="PROMISE"; version="1.56.0"; sha256="1r9pcilq5vdq958gwcp29q2mc7w55l3xpn76acnnrh3xkg9gm8rf"; depends=[Biobase GSEABase]; }; + PROPER = derive2 { name="PROPER"; version="1.36.0"; sha256="1haqz50cdd3inmjw4ifj171rx1097bxw8mkgvx07kc7vx9ypn11s"; depends=[edgeR]; }; + PROPS = derive2 { name="PROPS"; version="1.26.0"; sha256="10xzvw2m9i7h7y227xqkzc41d6ajpzqwciwn6dkg5mgagss42367"; depends=[Biobase bnlearn reshape2 sva]; }; + PROcess = derive2 { name="PROcess"; version="1.80.0"; sha256="0ra9rjc6525df0hn7c09fzi6qnmnwcrycng49yy151l72yy8kiki"; depends=[Icens]; }; + PSMatch = derive2 { name="PSMatch"; version="1.8.0"; sha256="13w145is3d95392qqdq6qh3mrlcixbj0jzz4r590xas1qjp5d03h"; depends=[BiocGenerics BiocParallel igraph Matrix MsCoreUtils ProtGenerics QFeatures S4Vectors]; }; + PWMEnrich = derive2 { name="PWMEnrich"; version="4.40.0"; sha256="0fzmsm880w1vwbjcakc5mkljx41rpk8m71g49kwmjgb1z36173m2"; depends=[BiocGenerics Biostrings evd gdata S4Vectors seqLogo]; }; + PanViz = derive2 { name="PanViz"; version="1.6.0"; sha256="1h4fxqxkaph5j3vkfhmmkhvmqa8czzdzxcg6f06v94hqf38i86i5"; depends=[colorspace data_table dplyr easycsv futile_logger igraph magrittr RColorBrewer rentrez rlang stringr tibble tidyr]; }; + PanomiR = derive2 { name="PanomiR"; version="1.8.0"; sha256="0hzhhrknspdw81dn48xqx532n27lj88k57ydsfxfm6rkix87pv96"; depends=[clusterProfiler dplyr forcats GSEABase igraph limma metap org_Hs_eg_db preprocessCore RColorBrewer rlang tibble withr]; }; + Path2PPI = derive2 { name="Path2PPI"; version="1.34.0"; sha256="0ys63k4637pr9qv037vmvv39qwxpi94rpaqffj64r0z32hi34445"; depends=[igraph]; }; + PathNet = derive2 { name="PathNet"; version="1.44.0"; sha256="1ad0x8amp5kh4hync86w3kikhqx2j97hsgpb2qy81dn83kbfbdwd"; depends=[]; }; + PathoStat = derive2 { name="PathoStat"; version="1.30.0"; sha256="1y3gzv4nq9jykdl07mabw51m60g267hb5sjjn3p9g7r6ysasj8c2"; depends=[ape BiocStyle ComplexHeatmap corpcor DESeq2 devtools dplyr DT edgeR ggplot2 glmnet gmodels knitr limma matrixStats phyloseq plotly plyr RColorBrewer rentrez reshape2 ROCR scales shiny shinyjs tidyr vegan webshot XML]; }; + PeacoQC = derive2 { name="PeacoQC"; version="1.14.0"; sha256="1r354h8lmp0r2nlvr9xj45dm8gbqrsfhl2p3wc9gvldsllq7z3ix"; depends=[circlize ComplexHeatmap flowCore flowWorkspace ggplot2 gridExtra plyr]; }; + Pedixplorer = derive2 { name="Pedixplorer"; version="1.0.0"; sha256="0nkvypb1gh0b43p864c9rnfbvsdc9jb2jr3c0jrg33crxjf6rmr0"; depends=[dplyr ggplot2 Matrix plyr quadprog S4Vectors stringr testthat tidyr]; }; + PepsNMR = derive2 { name="PepsNMR"; version="1.22.0"; sha256="0z3kw8j972zmrcyikag5js20zpgc3l5bgkn5q31dzi1q7ynpkwhv"; depends=[ggplot2 gridExtra Matrix matrixStats ptw reshape2]; }; + PhIPData = derive2 { name="PhIPData"; version="1.12.0"; sha256="1ar7fdsxngdyikcvi7j230jqfhdvji4cvfrxkn606wy764mrpyrm"; depends=[BiocFileCache BiocGenerics cli edgeR GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; + PharmacoGx = derive2 { name="PharmacoGx"; version="3.8.0"; sha256="098zg2c8xiw6v8fc072cnwlls5q762yjykaf6cjhyrz00bqxmvh1"; depends=[Biobase BiocGenerics BiocParallel boot caTools checkmate coop CoreGx data_table downloader ggplot2 jsonlite magicaxis MultiAssayExperiment RColorBrewer Rcpp reshape2 S4Vectors SummarizedExperiment]; }; + PhenStat = derive2 { name="PhenStat"; version="2.40.0"; sha256="0dpnij94h808aab8pyvvk7lnfn00f1hkisaasv28blj14fml63s8"; depends=[car corrplot ggplot2 graph knitr lme4 logistf MASS msgps nlme nortest pingr reshape SmoothWin]; }; + PhenoGeneRanker = derive2 { name="PhenoGeneRanker"; version="1.12.0"; sha256="1l85ibg1nm4dvwjc7b1gqmq6z5yrg3phfr24i23fzlddbwyx75hh"; depends=[doParallel dplyr foreach igraph Matrix]; }; + PhosR = derive2 { name="PhosR"; version="1.14.0"; sha256="05lc2l65nl15250f39rw7pcsfxw74rcakb6gg5wcp515iv13li07"; depends=[BiocGenerics circlize dendextend dplyr e1071 GGally ggdendro ggplot2 ggpubr ggtext igraph limma network pcaMethods pheatmap preprocessCore RColorBrewer reshape2 rlang ruv S4Vectors stringi SummarizedExperiment tidyr]; }; + PhyloProfile = derive2 { name="PhyloProfile"; version="1.18.0"; sha256="04z6k0i28d48v1d7n7zgxkb9n1747k27h5b5zlj8id8w293ggcaa"; depends=[ape BiocStyle bioDist Biostrings colourpicker data_table DT energy ExperimentHub ggplot2 gridExtra OmaDB pbapply plyr RColorBrewer RCurl shiny shinyBS shinycssloaders shinyFiles shinyjs stringr xml2 yaml zoo]; }; + Pigengene = derive2 { name="Pigengene"; version="1.30.0"; sha256="08jgn7cx3gvxsih8jp9xh1irf7f0j0yfw4srbc6ynffc0197papc"; depends=[BiocStyle bnlearn C50 clusterProfiler DBI DOSE dplyr gdata ggplot2 GO_db graph impute MASS matrixStats openxlsx partykit pheatmap preprocessCore ReactomePA Rgraphviz WGCNA]; }; + PoDCall = derive2 { name="PoDCall"; version="1.12.0"; sha256="121clnkr598p7iy91s0dp76ammz853p2cds0zy15pjj8n21rc7lv"; depends=[diptest DT ggplot2 gridExtra LaplacesDemon mclust purrr readr rlist shiny shinyjs]; }; + PrInCE = derive2 { name="PrInCE"; version="1.20.0"; sha256="173vakwqjalh2spz1f7qq6ngw8hjkqpj4zf0rx6xsnycjn54jip0"; depends=[Biobase dplyr forecast Hmisc LiblineaR magrittr MSnbase naivebayes progress purrr ranger Rdpack robustbase speedglm tester tidyr]; }; + Prostar = derive2 { name="Prostar"; version="1.36.2"; sha256="140whr7klab1as5y8h9lbmlgn4f63kfdfhzjyxjp8pk3aq1xv53i"; depends=[Biobase colourpicker DAPAR DAPARdata data_table DT future ggplot2 gplots gtools highcharter htmlwidgets later markdown promises R_utils rclipboard RColorBrewer rhandsontable sass shiny shinyAce shinyBS shinycssloaders shinyjqui shinyjs shinythemes shinyTree shinyWidgets tibble vioplot webshot XML]; }; + ProtGenerics = derive2 { name="ProtGenerics"; version="1.36.0"; sha256="0h0i4dgsgvyhma5pfvycv6wyxv27vp0b2i8b6l8hj55z8cvmvfln"; depends=[]; }; + ProteoDisco = derive2 { name="ProteoDisco"; version="1.10.0"; sha256="10cdniinadihp4acdz22c0zjg3if3rqn9cy753f2x1nq539n3vql"; depends=[BiocGenerics BiocParallel Biostrings checkmate cleaver dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges ParallelLogger plyr rlang S4Vectors tibble tidyr VariantAnnotation XVector]; }; + ProteoMM = derive2 { name="ProteoMM"; version="1.22.0"; sha256="173nqg0nqdgy7z9qklxk88lxmhj7qf8jjcidpllf9hap9y1lk910"; depends=[biomaRt gdata ggplot2 ggrepel gtools matrixStats]; }; + PureCN = derive2 { name="PureCN"; version="2.10.0"; sha256="1vywvl90nvqlzbamn6g6iparn3b09zkz95sw13rgp8qlqc192nbf"; depends=[Biobase BiocGenerics Biostrings data_table DNAcopy futile_logger GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra IRanges Matrix mclust RColorBrewer rhdf5 Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation VGAM]; }; + Pviz = derive2 { name="Pviz"; version="1.38.0"; sha256="1hshfgnidshwfka8l0fs4x4znpmmdi42wnkrrl6rhchj9dymjcnr"; depends=[Biostrings biovizBase data_table GenomicRanges Gviz IRanges]; }; + QDNAseq = derive2 { name="QDNAseq"; version="1.40.0"; sha256="1myk6qgl45ya7qw6sx6xc98d8m5ffl2ghm3zvqmyh9r0sp6x184f"; depends=[Biobase CGHbase CGHcall DNAcopy future_apply GenomicRanges IRanges matrixStats R_utils Rsamtools]; }; + QFeatures = derive2 { name="QFeatures"; version="1.14.1"; sha256="1sgvabfad3zibrg449y7hw8l59yb2d8q01x7lp841m45b1g0q9d8"; depends=[AnnotationFilter Biobase BiocGenerics igraph IRanges lazyeval MsCoreUtils MultiAssayExperiment plotly ProtGenerics reshape2 S4Vectors SummarizedExperiment tidyr tidyselect]; }; + QSutils = derive2 { name="QSutils"; version="1.22.0"; sha256="10z7cmhaqn4cp2lw3xq1mhjcjbph2lsprdz8k9q3qkmxgzl3anik"; depends=[ape BiocGenerics Biostrings psych pwalign]; }; + QTLExperiment = derive2 { name="QTLExperiment"; version="1.2.0"; sha256="1kns5kgfazfyg3bf19hvkqngq4n6xzqww5aya2h8bakl53bzk2sc"; depends=[ashr BiocGenerics checkmate collapse dplyr rlang S4Vectors SummarizedExperiment tibble tidyr vroom]; }; + QUBIC = derive2 { name="QUBIC"; version="1.32.0"; sha256="1dqg7vdpmsjd5prswz7g223q0wzwih44k8fz2cy5a83cdc1c7xl2"; depends=[biclust Matrix Rcpp RcppArmadillo]; }; + Qtlizer = derive2 { name="Qtlizer"; version="1.18.0"; sha256="0m307wfjqg7rrgsxvphggy1vd3l9l58vknjqnc63j02qr0wsw43m"; depends=[curl GenomicRanges httr stringi]; }; + QuartPAC = derive2 { name="QuartPAC"; version="1.36.0"; sha256="0ha8gv7a6ia4z2z2r7404hngc1sy269hrpj9gdxwhj7hl15nqs30"; depends=[Biostrings data_table GraphPAC iPAC pwalign SpacePAC]; }; + QuasR = derive2 { name="QuasR"; version="1.44.0"; sha256="116qnp7d7z4a56fv6n55yzrdlmma9gwrw234nmy8iapkn5ms3xky"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicFiles GenomicRanges IRanges Rbowtie Rhtslib Rsamtools rtracklayer S4Vectors ShortRead txdbmaker]; }; + QuaternaryProd = derive2 { name="QuaternaryProd"; version="1.38.0"; sha256="0bpx4lliz75jh6d2ngrmjc21577aawrcs7lh1k5pwg94jmj03pmg"; depends=[dplyr Rcpp yaml]; }; + R3CPET = derive2 { name="R3CPET"; version="1.36.0"; sha256="12gq5mj6vbkd49slhpgnmwfdl65hr4wip9xbqx3j72b0f0yabg1h"; depends=[BiocGenerics clValid data_table GenomeInfoDb GenomicRanges ggbio ggplot2 Hmisc igraph IRanges pheatmap Rcpp RCurl reshape2 S4Vectors]; }; + R453Plus1Toolbox = derive2 { name="R453Plus1Toolbox"; version="1.54.0"; sha256="0x5p028x13hygd1b2l4g2dclm9lnwj1hsh6x58hmkpbx27w68rb9"; depends=[Biobase BiocGenerics biomaRt Biostrings BSgenome GenomicRanges IRanges pwalign R2HTML Rsamtools S4Vectors ShortRead SummarizedExperiment TeachingDemos VariantAnnotation xtable XVector]; }; + R4RNA = derive2 { name="R4RNA"; version="1.32.0"; sha256="0cpfngd11zlws756q8cnhy5451kj8hg5ckilvmhndfapkz4w93x1"; depends=[Biostrings]; }; + RAIDS = derive2 { name="RAIDS"; version="1.2.0"; sha256="0frwaqmbd74gccqj8ibkgkyj1ii7q8qczzmkv9wgi4m0d9m2cy0v"; depends=[AnnotationDbi AnnotationFilter BSgenome class ensembldb gdsfmt GENESIS GenomicRanges IRanges MatrixGenerics pROC rlang S4Vectors SNPRelate VariantAnnotation]; }; + RAREsim = derive2 { name="RAREsim"; version="1.8.0"; sha256="1d55wfs6rg3mq7x1f2aalgln6vpcb2qfp8fq3yi1ki4ki5dzpb05"; depends=[nloptr]; }; + RBGL = derive2 { name="RBGL"; version="1.80.0"; sha256="1n6rfrcvlgi6mzz36v9sniqr05xfjzvfdpv4xwsn1xq41326wdv3"; depends=[BH graph]; }; + RBM = derive2 { name="RBM"; version="1.36.0"; sha256="10q0b86jjpf5ch3xpax6vwkl8cd72djzvij0b6p53as7n8nqxz0p"; depends=[limma marray]; }; + RBioFormats = derive2 { name="RBioFormats"; version="1.4.0"; sha256="1xwazjipv1yrxyx9mny7j7mmc7mvdlrmvjwy8v3i2hfmf137nlj1"; depends=[EBImage rJava S4Vectors]; }; + RBioinf = derive2 { name="RBioinf"; version="1.64.0"; sha256="093gd1z1yqyhdqs8s7yyjb2ndf9izp0pnpbglp05599cf053zfnr"; depends=[graph]; }; + RCAS = derive2 { name="RCAS"; version="1.30.0"; sha256="0ll0sj2zyazw0nxbpybq9frmxvmcjkgk3hwp3flnysjxg056dhxg"; depends=[BiocGenerics Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 cowplot data_table DT genomation GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gprofiler2 IRanges knitr pbapply pheatmap plotly plotrix proxy ranger rmarkdown RSQLite rtracklayer S4Vectors seqLogo txdbmaker]; }; + RCASPAR = derive2 { name="RCASPAR"; version="1.50.0"; sha256="1aw2sqq8hmll31aagd6nxndwszxj16plba0v85jk880ycxpnd0hr"; depends=[]; }; + RCM = derive2 { name="RCM"; version="1.20.0"; sha256="03f8gifzqhc5hdppk4lfybj7p3gkqb5jnpsxpf515dd7c5y210gy"; depends=[alabama DBI edgeR ggplot2 MASS nleqslv phyloseq RColorBrewer reshape2 tensor tseries VGAM]; }; + RCSL = derive2 { name="RCSL"; version="1.12.0"; sha256="1r103i9v8b5w74b3ad7fr25sgsd0xx5kjrxawbwks57dk9k8m272"; depends=[ggplot2 igraph MatrixGenerics NbClust pracma Rcpp RcppAnnoy Rtsne SingleCellExperiment umap]; }; + RCX = derive2 { name="RCX"; version="1.8.0"; sha256="0vkh57hcz71h8v8ad1rffjakf4ax1pyh5vvfwfmfnkh19ywfln4i"; depends=[igraph jsonlite plyr]; }; + RCy3 = derive2 { name="RCy3"; version="2.24.0"; sha256="03zmskcb8n87x6m5jlhsh2b0b2qjk91y16fdcj3kz5c1j7zfs18i"; depends=[base64enc base64url BiocGenerics fs glue gplots graph httr IRdisplay IRkernel RColorBrewer RCurl RJSONIO stringi uuid XML]; }; + RCyjs = derive2 { name="RCyjs"; version="2.26.1"; sha256="0apqkpcrl7snsaldzranz1sk6zl6vc0rgrdg5h0srkzwdqnx10sh"; depends=[base64enc BiocGenerics BrowserViz graph httpuv]; }; + RDRToolbox = derive2 { name="RDRToolbox"; version="1.54.0"; sha256="1lg7z6wy4903fyg1j7x5bjd9l550g05rhx0gc60ki9pwlm7q82hv"; depends=[MASS rgl]; }; + REBET = derive2 { name="REBET"; version="1.22.0"; sha256="09wb77d7j1f59mlnqdl9q4nl1qn75a9qq3sfa9k6nvb7x721scl4"; depends=[ASSET]; }; + REDseq = derive2 { name="REDseq"; version="1.50.0"; sha256="15lx6sjw8rm0lrvyjfq3n4nq0r6rlgwvnm6bafd86a1dii934gf8"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome BSgenome_Celegans_UCSC_ce2 ChIPpeakAnno IRanges multtest]; }; + REMP = derive2 { name="REMP"; version="1.28.0"; sha256="1ss4170nxif8942095nk5lv1knqf082i4nlxsr3kyvf8ghqn2gmd"; depends=[AnnotationHub BiocGenerics BiocParallel Biostrings BSgenome caret doParallel foreach GenomeInfoDb GenomicRanges impute IRanges iterators kernlab minfi org_Hs_eg_db ranger readr rtracklayer S4Vectors settings SummarizedExperiment]; }; + RESOLVE = derive2 { name="RESOLVE"; version="1.6.0"; sha256="12ax0f3vasppwn5z10fr2mhhaaiyiii5qi3ll4yzsn7qmy02ya52"; depends=[Biostrings BSgenome BSgenome_Hsapiens_1000genomes_hs37d5 data_table GenomeInfoDb GenomicRanges ggplot2 glmnet gridExtra IRanges lsa MutationalPatterns nnls reshape2 S4Vectors]; }; + RGMQL = derive2 { name="RGMQL"; version="1.24.0"; sha256="1p7s17i18ql3b8yvg6pmcz62ql18ncd3hqk0rganmahfbd91idby"; depends=[BiocGenerics data_table dplyr GenomicRanges glue httr plyr RGMQLlib rJava rtracklayer S4Vectors xml2]; }; + RGSEA = derive2 { name="RGSEA"; version="1.38.0"; sha256="1jz3m6yvk1mybac5xyhpk9vvssnm9iq1mfk2aj32hv338q7cj8js"; depends=[BiocGenerics]; }; + RGraph2js = derive2 { name="RGraph2js"; version="1.32.0"; sha256="1lb8kbqcimpivpzrxbcnlw8pdjzfq45nhhy7pdq7nvx9r5yrcks2"; depends=[digest graph rjson whisker]; }; + RITAN = derive2 { name="RITAN"; version="1.28.0"; sha256="1jvwvgdqgxlnccf8k2mc1ihg4nasdqbl0pnm7khw3px39b1bnlzl"; depends=[AnnotationFilter BgeeDB dynamicTreeCut EnsDb_Hsapiens_v86 ensembldb GenomicFeatures ggplot2 gplots gridExtra gsubfn hash igraph knitr linkcomm MCL plotrix png RColorBrewer reshape2 RITANdata sqldf STRINGdb]; }; + RIVER = derive2 { name="RIVER"; version="1.28.0"; sha256="0clqr2h7cf00lzj1y405hfyc9i1aadssrzhrzl4wp1r4774rpw4z"; depends=[Biobase ggplot2 glmnet pROC]; }; + RImmPort = derive2 { name="RImmPort"; version="1.32.0"; sha256="0kvl9ivf0y7wjkaj7a5qbn9hv9ghbl00xm55i30p4vsvk8q32h3s"; depends=[data_table DBI dplyr plyr reshape2 RSQLite sqldf]; }; + RJMCMCNucleosomes = derive2 { name="RJMCMCNucleosomes"; version="1.28.0"; sha256="0w9d61zd6g3c8dp9i68nw8rmbnrf6lfa86m9a7ydkf54w7p33fsk"; depends=[BiocGenerics BiocParallel consensusSeekeR GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; + RLMM = derive2 { name="RLMM"; version="1.66.0"; sha256="1ihqlag1gxw08rg1ii2mpxg8gnwsxyg3ggd3k8fjnlqd6zsbvdq9"; depends=[MASS]; }; + RLassoCox = derive2 { name="RLassoCox"; version="1.12.0"; sha256="14zw0xnssh17c6v4qy3b81qrv453r2ayjnq62d1ix695xl7q2g43"; depends=[glmnet igraph Matrix survival]; }; + RMassBank = derive2 { name="RMassBank"; version="3.14.0"; sha256="05ymkjk6hkilm4wn7qn6dh1gf4pxp3zk339fbi10jri8ar0ilbls"; depends=[assertthat Biobase ChemmineOB ChemmineR data_table digest enviPat glue httr logger MSnbase mzR R_utils rcdk Rcpp readJDX rjson S4Vectors webchem XML yaml]; }; + RNAAgeCalc = derive2 { name="RNAAgeCalc"; version="1.16.0"; sha256="1h221flwa8b4dchw3b65cx7z11744cljzimqc2pv991dp21bvhnk"; depends=[AnnotationDbi ggplot2 impute org_Hs_eg_db recount SummarizedExperiment]; }; + RNASeqPower = derive2 { name="RNASeqPower"; version="1.44.0"; sha256="0jv1cm4j467gjx6j297h60yj7xd4ax71v2rgm65sibswbnxvbfa1"; depends=[]; }; + RNAdecay = derive2 { name="RNAdecay"; version="1.24.0"; sha256="1bf0mgj1n38wqapabbw9d74s5099sqlpkhb9yd9p8w48hwfdk4nc"; depends=[ggplot2 gplots nloptr scales TMB]; }; + RNAinteract = derive2 { name="RNAinteract"; version="1.52.0"; sha256="18jxg1wxa4z8ik9g7q3rr6mijrl1vk4b7wnkxs5pll6qz97mh726"; depends=[abind Biobase cellHTS2 geneplotter gplots hwriter ICS ICSNP lattice latticeExtra limma locfit RColorBrewer splots]; }; + RNAmodR = derive2 { name="RNAmodR"; version="1.18.0"; sha256="0c4ndc7r3rpk8gmd0n4n5q0x72cz3ja48sq4w3w9ahn05l9qql2v"; depends=[BiocGenerics BiocParallel Biostrings BSgenome colorRamps GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz IRanges matrixStats Modstrings RColorBrewer reshape2 ROCR Rsamtools rtracklayer S4Vectors txdbmaker]; }; + RNAmodR_AlkAnilineSeq = derive2 { name="RNAmodR.AlkAnilineSeq"; version="1.18.0"; sha256="1czaa3y8xzadrj1f8h1y4f0xvpb12s8l64k5lxhvp77s1gcxqcxm"; depends=[BiocGenerics GenomicRanges Gviz IRanges RNAmodR S4Vectors]; }; + RNAmodR_ML = derive2 { name="RNAmodR.ML"; version="1.18.0"; sha256="1xcpjq8w81gw52fjb5ijdlf2k94qwqf6s6c8h6y6rja1csqpkn9i"; depends=[BiocGenerics GenomicRanges IRanges ranger RNAmodR S4Vectors]; }; + RNAmodR_RiboMethSeq = derive2 { name="RNAmodR.RiboMethSeq"; version="1.18.0"; sha256="0qcl95c22kwn0prhznk2s97aisapq0pldcvp2mvckh5wi2jqrbbp"; depends=[BiocGenerics GenomicRanges Gviz IRanges RNAmodR S4Vectors]; }; + RNAsense = derive2 { name="RNAsense"; version="1.18.0"; sha256="1ynaylwxb1vcwx5g14sw1lz6sidnbhc0gb4z3i8gz1yr32mpnmgl"; depends=[ggplot2 NBPSeq qvalue SummarizedExperiment]; }; + RNAseqCovarImpute = derive2 { name="RNAseqCovarImpute"; version="1.2.0"; sha256="1gy7kmhp7hzv75hi1n8lcgsqqwwr7nm6r50rccqmswky5g6wd9nb"; depends=[Biobase BiocGenerics BiocParallel dplyr edgeR foreach limma magrittr mice rlang]; }; + ROC = derive2 { name="ROC"; version="1.80.0"; sha256="074c6jg0dyr3hckizpg56f8ij8szj43cx6x5bbw7a01xdjdc70yb"; depends=[knitr]; }; + ROCpAI = derive2 { name="ROCpAI"; version="1.16.0"; sha256="1nisrspdl4m6q9hpxhd49dxhfsi27znh4alcvc7gbhlqmbi0q9cs"; depends=[boot fission knitr SummarizedExperiment]; }; + ROSeq = derive2 { name="ROSeq"; version="1.16.0"; sha256="1rs3dfgsm7bznvjyajdkkvi3zdd84barkq78ma09vg02n7x6zkfc"; depends=[edgeR limma pbmcapply]; }; + ROTS = derive2 { name="ROTS"; version="1.32.0"; sha256="1s9hr64gpz08j638wlglcmk6c8yyj1hzrgddiphklkapc1asr320"; depends=[Biobase Rcpp]; }; + ROntoTools = derive2 { name="ROntoTools"; version="2.32.0"; sha256="0idclyk1dwpmfksf9l9ms4nwpin1flw50bafxa0pqlh9fdj5bz0z"; depends=[boot graph KEGGgraph KEGGREST Rgraphviz]; }; + RPA = derive2 { name="RPA"; version="1.60.0"; sha256="0v1jkny311ba43fz7x4i94ddm5hq9281gfj6wkr3disdbxjqgj37"; depends=[affy BiocGenerics BiocStyle phyloseq rmarkdown]; }; + RProtoBufLib = derive2 { name="RProtoBufLib"; version="2.16.0"; sha256="1vhp43l2iknljy240kzgvckkzbg186nkfdd1m3la9fnf9sqr33z9"; depends=[]; }; + RRHO = derive2 { name="RRHO"; version="1.44.0"; sha256="132mwv1qc32gbdjm8825aqd5l1f64hx78kqcbb6a347ch9c9pmwv"; depends=[VennDiagram]; }; + RSVSim = derive2 { name="RSVSim"; version="1.44.0"; sha256="1w79dsv2z8i7m58pbih52sfh8adr9gl5j94j4k8vhaj4288jba0d"; depends=[Biostrings GenomicRanges IRanges ShortRead]; }; + RSeqAn = derive2 { name="RSeqAn"; version="1.24.0"; sha256="0jc2abpjq2w7f22qj9izd98xckz7zsjx516g5ygdrik3r47hgh6x"; depends=[Rcpp]; }; + RTCA = derive2 { name="RTCA"; version="1.56.0"; sha256="078bh47vfkr5a0qvhnjadjzd0ph3pg32dv1r3ssvz9fq8qg4g0hy"; depends=[Biobase gtools RColorBrewer]; }; + RTCGA = derive2 { name="RTCGA"; version="1.34.0"; sha256="1a967id4anjzpdlbdd8a85fvb1z7mcr759pr91aashv12bzzhnk0"; depends=[assertthat data_table dplyr ggplot2 ggthemes htmltools knitr purrr RCurl rmarkdown rvest scales stringi survival survminer viridis XML xml2]; }; + RTCGAToolbox = derive2 { name="RTCGAToolbox"; version="2.34.0"; sha256="0l4idk6gsrnm7laj1xkm6jwmyy5l90kphm21zk7y33cpnp2ryjwr"; depends=[BiocGenerics data_table DelayedArray GenomeInfoDb GenomicRanges httr RaggedExperiment RCurl RJSONIO rvest S4Vectors stringr SummarizedExperiment TCGAutils]; }; + RTN = derive2 { name="RTN"; version="2.28.0"; sha256="09zd8z3wn26r7bamzq17slamydr73aqlx94zi0273npfggcwv4n1"; depends=[car data_table igraph IRanges limma minet mixtools pheatmap pwr RedeR S4Vectors snow SummarizedExperiment viper]; }; + RTNduals = derive2 { name="RTNduals"; version="1.28.0"; sha256="0idr55acbdi7bbcds9vp0sjv1px8dsmycll7z92f7l2xrk1mgyhp"; depends=[RTN]; }; + RTNsurvival = derive2 { name="RTNsurvival"; version="1.28.0"; sha256="1545jbis4gpcggw320kkrh7s2dllw4rwpq0qc95zm9v9yjxzzzk6"; depends=[data_table dunn_test egg ggplot2 pheatmap RColorBrewer RTN RTNduals scales survival]; }; + RTopper = derive2 { name="RTopper"; version="1.50.0"; sha256="14y4qvx5iyiqghw4cwn1k3sn7i788iakfzssl0gqal0r6npdh9ib"; depends=[Biobase limma multtest]; }; + RUVSeq = derive2 { name="RUVSeq"; version="1.38.0"; sha256="0i91kjwransy6l217rmxfzfchb43h1sjk8ygf0y8a3rv6rp7ylfd"; depends=[Biobase EDASeq edgeR MASS]; }; + RUVcorr = derive2 { name="RUVcorr"; version="1.36.0"; sha256="05fga28l65h21b84pn6gn6vrgglnvpblmrz551qj2djrmzda3pn1"; depends=[BiocParallel bladderbatch corrplot gridExtra lattice MASS psych reshape2 snowfall]; }; + RUVnormalize = derive2 { name="RUVnormalize"; version="1.38.0"; sha256="109q8cywgzxyc31hzjx73arffdhasblg7wk5gfwqcqfv2120r99c"; depends=[Biobase RUVnormalizeData]; }; + RVS = derive2 { name="RVS"; version="1.26.0"; sha256="10j84lhap7c74scar3gmk983zi6lhl8zvawp9ap46qf8wrpnqp4k"; depends=[GENLIB gRain kinship2 R_utils snpStats]; }; + RadioGx = derive2 { name="RadioGx"; version="2.8.0"; sha256="0ykw5hm48fh6xqxdfgmjjbqdd5hp4dmhnykg3zkmb9wrcfp4zx7f"; depends=[assertthat Biobase BiocGenerics BiocParallel caTools CoreGx data_table downloader magicaxis matrixStats RColorBrewer reshape2 S4Vectors scales SummarizedExperiment]; }; + RaggedExperiment = derive2 { name="RaggedExperiment"; version="1.28.0"; sha256="1mzjc52naf6brffv6d2bak16y3ygz9lsk8yqgcfa44180bslz3xx"; depends=[BiocBaseUtils BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix MatrixGenerics S4Vectors SummarizedExperiment]; }; + RankProd = derive2 { name="RankProd"; version="3.30.0"; sha256="0y9c833zn3l4492cl7b71x5g7q6kr81zh2f3v9x4l52q6mw6l5qh"; depends=[gmp Rmpfr]; }; + RareVariantVis = derive2 { name="RareVariantVis"; version="2.32.0"; sha256="08siw7yzx1jd3cgg2mirc27ycpk6wdvv4vcwzln1ps35nkhy52in"; depends=[BiocGenerics BSgenome BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores googleVis gtools IRanges phastCons100way_UCSC_hg19 S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; + Rarr = derive2 { name="Rarr"; version="1.4.0"; sha256="0ks576wqzywlk07wlb116sjzs1b1103mwrd5410qya13mwq6yx62"; depends=[httr jsonlite paws_storage R_utils stringr]; }; + RbcBook1 = derive2 { name="RbcBook1"; version="1.72.0"; sha256="00y8lzfz7z9zmzrg9qyiwkwbcn2xsg6xiphzjvz02j34ghig43ng"; depends=[Biobase graph rpart]; }; + Rbec = derive2 { name="Rbec"; version="1.12.0"; sha256="1cf5g2q8ak45ipb0cvgnrqy4s131g9lnchzs6g7mfj7b6ynkgp6d"; depends=[dada2 doParallel foreach ggplot2 Rcpp readr]; }; + Rbowtie = derive2 { name="Rbowtie"; version="1.44.0"; sha256="1in3qani4xh5m5zpbny1nbsvh60ahs36bas8hplkdpd8hnhfla56"; depends=[]; }; + Rbowtie2 = derive2 { name="Rbowtie2"; version="2.10.0"; sha256="1spwpbx1jjfjcxbwjkl64ccp9k8xs6lm828546qddsgp20y3bhgp"; depends=[magrittr Rsamtools]; }; + Rbwa = derive2 { name="Rbwa"; version="1.8.0"; sha256="0qbipwgdfgzdkrlvwmx0nbi8v4frv0r2vl8hd2mypf205mv4qb8b"; depends=[]; }; + RcisTarget = derive2 { name="RcisTarget"; version="1.24.0"; sha256="1856jnvqacr12j5hnnl4w2abjjd7qvkz7cs8yhbnqpy1896wki0v"; depends=[arrow AUCell BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges GSEABase R_utils S4Vectors SummarizedExperiment tibble zoo]; }; + Rcollectl = derive2 { name="Rcollectl"; version="1.4.0"; sha256="1i1a8imzdangilmww0r3l75npc19xbija9lj13nbwj1vnwb85cpa"; depends=[ggplot2 lubridate processx]; }; + Rcpi = derive2 { name="Rcpi"; version="1.40.0"; sha256="1zi7fsq02cac60z92nan9374b2l07qx2fa7jrcngs0xgjcw6k31n"; depends=[Biostrings doParallel foreach GOSemSim pwalign RCurl rjson rlang]; }; + Rcwl = derive2 { name="Rcwl"; version="1.20.0"; sha256="02pxjcf3bbvv4hh2vr796b3pyd8vxh5v4g2bkgicsc0jw40554rr"; depends=[basilisk batchtools BiocParallel codetools DiagrammeR R_utils S4Vectors shiny yaml]; }; + RcwlPipelines = derive2 { name="RcwlPipelines"; version="1.20.0"; sha256="1bivrgd9f431spg0gv1achs258rmyxcnggn7zh63z2nlskxx3pp1"; depends=[BiocFileCache git2r httr rappdirs Rcwl S4Vectors]; }; + Rdisop = derive2 { name="Rdisop"; version="1.64.0"; sha256="1gcg441mp6bdnzjkh4gg6zgjn4hnw5i8mdcvb1hfim4hsc7sdsxv"; depends=[Rcpp]; }; + ReUseData = derive2 { name="ReUseData"; version="1.4.0"; sha256="1dai0mxsnjmr6gs465mljfnydai276i5zjjbgxphgas1z3iv9sz6"; depends=[basilisk BiocFileCache jsonlite Rcwl RcwlPipelines S4Vectors yaml]; }; + ReactomeContentService4R = derive2 { name="ReactomeContentService4R"; version="1.12.0"; sha256="1qqrkki9v3ggwqv88n7w3wp50y4gxvkixrg1sad23vl08jd0rkl6"; depends=[data_table doParallel foreach httr jsonlite magick]; }; + ReactomeGSA = derive2 { name="ReactomeGSA"; version="1.18.0"; sha256="188c0vrbq01gy4zhsf9wsg9amjf9434g0fzf3lnwzxdm0xzw2b33"; depends=[Biobase dplyr ggplot2 gplots httr jsonlite progress RColorBrewer tidyr]; }; + ReactomeGraph4R = derive2 { name="ReactomeGraph4R"; version="1.12.0"; sha256="17xkrqyp5wdsdd0gpplsk3qfsr8sgf1ap0vz6v34xlhbmzdq3rs8"; depends=[data_table doParallel foreach getPass jsonlite magrittr neo4r purrr ReactomeContentService4R rlang]; }; + ReactomePA = derive2 { name="ReactomePA"; version="1.48.0"; sha256="0i5jrdzg6zcs1jx0lryq8d467lxi1hvd1x6p74ywwxga88p46zk6"; depends=[AnnotationDbi DOSE enrichplot ggplot2 ggraph graphite gson igraph reactome_db]; }; + ReadqPCR = derive2 { name="ReadqPCR"; version="1.50.0"; sha256="1bv65my3azx1v16qdcb5s0bycykdga6kfpvhj8av6g0cyrq6xj8y"; depends=[Biobase]; }; + RedeR = derive2 { name="RedeR"; version="3.0.0"; sha256="1x4435mcm4f8w5a7y54269f3npwxz26347v77ngmnjj32nfch8l9"; depends=[igraph scales]; }; + RedisParam = derive2 { name="RedisParam"; version="1.6.0"; sha256="1j4h509gl9grgy8npj2fxnvm2kx0q41bcfid26v7p91c6i33gzsj"; depends=[BiocParallel futile_logger redux withr]; }; + RegEnrich = derive2 { name="RegEnrich"; version="1.14.0"; sha256="1gma0xsw72pi3shxlnvx3ynkvys2hv3g95gx2x0whdsarxwki34h"; depends=[BiocParallel BiocSet BiocStyle DESeq2 DOSE dplyr fgsea ggplot2 limma magrittr randomForest reshape2 S4Vectors SummarizedExperiment tibble WGCNA]; }; + RegionalST = derive2 { name="RegionalST"; version="1.2.0"; sha256="0gzc1m6ds6bnkq26bpq9i0mbpyw2biwnn07d30cdzipfsxbjdhlk"; depends=[assertthat BayesSpace colorspace dplyr fgsea ggplot2 gridExtra magrittr RColorBrewer S4Vectors scater Seurat shiny SingleCellExperiment SummarizedExperiment tibble TOAST]; }; + RepViz = derive2 { name="RepViz"; version="1.20.0"; sha256="1rww94wdpswy27i26zn25g8j2s1l14xmljhkz6fl45jmkfn4cqxa"; depends=[biomaRt GenomicRanges IRanges Rsamtools S4Vectors]; }; + Repitools = derive2 { name="Repitools"; version="1.50.0"; sha256="1ypiiwi7kp5j8ayz3c9b1gzsy7kd1iw3zv35hrg7pb5fry63dg9g"; depends=[BiocGenerics Biostrings BSgenome cluster DNAcopy edgeR GenomeInfoDb GenomicAlignments GenomicRanges gplots gsmoothr IRanges MASS Rsamtools Rsolnp rtracklayer S4Vectors]; }; + ReportingTools = derive2 { name="ReportingTools"; version="2.44.0"; sha256="0vq46dj2v3imjmf6cw8mab6k9v4rrc5r2vh100jjlsm3z15gvl17"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category DESeq2 edgeR ggbio ggplot2 GOstats GSEABase hwriter IRanges knitr lattice limma PFAM_db R_utils XML]; }; + ResidualMatrix = derive2 { name="ResidualMatrix"; version="1.14.0"; sha256="1q27zzl570q22nk4xjpnpa674p76hzzvilynx9i6awnzs10zjggn"; depends=[DelayedArray Matrix S4Vectors]; }; + Rfastp = derive2 { name="Rfastp"; version="1.14.0"; sha256="1zk2zm08nv8i9q39s7dbppd3pk5kxki17x00971wwsfvl261hnsy"; depends=[ggplot2 Rcpp reshape2 Rhtslib rjson zlibbioc]; }; + RgnTX = derive2 { name="RgnTX"; version="1.6.0"; sha256="15mw5j8wjbzygqj1v5pqh0dz6n37y55p08yi884hpw7sn9dwkfsw"; depends=[GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges regioneR S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene]; }; + Rgraphviz = derive2 { name="Rgraphviz"; version="2.48.0"; sha256="09i174a867vqyb6677sj88lk6bpfc4ajsmjgjkd7f7q66j46q655"; depends=[graph]; }; + Rhdf5lib = derive2 { name="Rhdf5lib"; version="1.26.0"; sha256="0q4ix3nzr69pmwm6vdna51yxlqi8frch0xyv6wmiy35n67d4fcab"; depends=[]; }; + Rhisat2 = derive2 { name="Rhisat2"; version="1.20.0"; sha256="0a7k9p08gq537275r7dfzh34ycxx8h4fmac74jimwhsa420793r5"; depends=[GenomicRanges SGSeq txdbmaker]; }; + Rhtslib = derive2 { name="Rhtslib"; version="3.0.0"; sha256="0497b43wxcfqyr4k30f0xq7yillb4fz0gqiqxxp66gvnqv4wiv6v"; depends=[zlibbioc]; }; + RiboCrypt = derive2 { name="RiboCrypt"; version="1.10.0"; sha256="0ay8yl1fc4iizina4aqvyjr6iqpc7dr457l7w4p3849d3i160304"; depends=[BiocGenerics BiocParallel Biostrings bslib data_table dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 htmlwidgets httr IRanges jsonlite knitr markdown NGLVieweR ORFik plotly RCurl rlang shiny shinycssloaders shinyhelper shinyjqui stringr]; }; + RiboDiPA = derive2 { name="RiboDiPA"; version="1.12.0"; sha256="0an2hbjzi514kb0m4l8i46w4zyxp510vw2f3xdmldjdyv5yw4v1z"; depends=[BiocFileCache BiocGenerics data_table DESeq2 doParallel elitism foreach GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges matrixStats qvalue Rcpp reldist Rsamtools S4Vectors txdbmaker]; }; + RiboProfiling = derive2 { name="RiboProfiling"; version="1.34.0"; sha256="0h0sxmg4knsarh7w7dnp539cs9sfxjw4413q1yyyz3gbi23bzww4"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr reshape2 Rsamtools rtracklayer S4Vectors sqldf]; }; + Rmagpie = derive2 { name="Rmagpie"; version="1.60.0"; sha256="146db5sz1kkgpwdarll8ca6ndb0l48hxnfi7cp39zllrhwfmwzdm"; depends=[Biobase e1071 kernlab pamr]; }; + Rmmquant = derive2 { name="Rmmquant"; version="1.22.0"; sha256="1jshnr4xph4glrk0pl3r8pklxnzg495m74yx25xjqg8avwahwvw4"; depends=[apeglm BiocStyle DESeq2 devtools GenomicRanges org_Mm_eg_db Rcpp S4Vectors SummarizedExperiment TBX20BamSubset TxDb_Mmusculus_UCSC_mm9_knownGene]; }; + RnBeads = derive2 { name="RnBeads"; version="2.22.0"; sha256="0v7dzmbyskq0vmja09dncg1g50dl3iycg883swb7lfvi4xzr42vj"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr S4Vectors]; }; + RnaSeqSampleSize = derive2 { name="RnaSeqSampleSize"; version="2.14.0"; sha256="0zfmrpfnz8bka6z4408bl5mzv1yr7648qizy8b93qc903vx3zhvs"; depends=[biomaRt dplyr edgeR ggplot2 ggpubr heatmap3 KEGGREST matlab Rcpp recount RnaSeqSampleSizeData SummarizedExperiment tidyr tidyselect]; }; + Rnits = derive2 { name="Rnits"; version="1.38.0"; sha256="1c4l6flfyamnjhb3givw4icx6cbl2pnrvscalrywyhxpqk64cirv"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; }; + RolDE = derive2 { name="RolDE"; version="1.8.0"; sha256="11ishff55z086qgc28vxamc5blfxs95qn758f5cgvf9rfr8h64rz"; depends=[doParallel doRNG foreach matrixStats nlme qvalue rngtools ROTS SummarizedExperiment]; }; + Rqc = derive2 { name="Rqc"; version="1.38.0"; sha256="0szd5ygcvpaiwqss8galxzxpslpfh93rk42s865v0qpv0s9v9x0l"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings biovizBase GenomicAlignments GenomicFiles ggplot2 IRanges knitr markdown plyr Rcpp reshape2 Rsamtools S4Vectors shiny ShortRead]; }; + Rsamtools = derive2 { name="Rsamtools"; version="2.20.0"; sha256="04lz0dzwmgi8j9wyspbmjln6yb5fv4f538nqyrfd31d0g16937b8"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges Rhtslib S4Vectors XVector zlibbioc]; }; + Rsubread = derive2 { name="Rsubread"; version="2.18.0"; sha256="0nd5b1k0dsxpf93wqx01fgbvk40jcfs7b7w692bsx620lm42ipfg"; depends=[Matrix]; }; + Rtpca = derive2 { name="Rtpca"; version="1.14.0"; sha256="1prrc1ys74pfr0cgn9qx2is9zzpybvapi34xp1yxnq1xcgynkrxv"; depends=[Biobase dplyr fdrtool ggplot2 pROC tibble tidyr]; }; + Rtreemix = derive2 { name="Rtreemix"; version="1.66.0"; sha256="0rlhrzpyv95mm9wdqmn2wqqkgb3nm3irqrffba81ip7mn9fmdjsw"; depends=[Biobase graph Hmisc]; }; + Rvisdiff = derive2 { name="Rvisdiff"; version="1.2.0"; sha256="1s4jhg79s2q71v2y5h6ihwr05giyv987kncr22g60frsdsav2hcm"; depends=[edgeR]; }; + S4Arrays = derive2 { name="S4Arrays"; version="1.4.1"; sha256="0wdzp1q6hyks4afm217yl2n770jsqaqxix71imni1r0qbxdfkdwl"; depends=[abind BiocGenerics crayon IRanges Matrix S4Vectors]; }; + S4Vectors = derive2 { name="S4Vectors"; version="0.42.0"; sha256="0aq0j70sl8a42gc1abxdwdy74mi9k4krz56yrbpwqv78x42cjjm9"; depends=[BiocGenerics]; }; + SAIGEgds = derive2 { name="SAIGEgds"; version="2.4.0"; sha256="1pkg72pqqlmj51vjz5p3qrj3b2lqqnzmh4ddbrn73rs66sgm9zkp"; depends=[CompQuadForm gdsfmt Matrix Rcpp RcppArmadillo RcppParallel SeqArray survey]; }; + SARC = derive2 { name="SARC"; version="1.2.0"; sha256="11hiz7lzhkp2459c92x0i9kia7yc8zbl7n7c3wd66g2pbzfjzv6f"; depends=[data_table DescTools GenomicFeatures GenomicRanges ggplot2 gridExtra gtable IRanges metap multtest plotly plyranges RaggedExperiment RColorBrewer reshape2 scales tidyverse]; }; + SBGNview = derive2 { name="SBGNview"; version="1.18.0"; sha256="1smxxwyc03m6bbw1l5bzfl6q2g2f93z53z8iyk42lwkfp26zv6i5"; depends=[AnnotationDbi bookdown httr igraph KEGGREST knitr pathview Rdpack rmarkdown rsvg SBGNview_data SummarizedExperiment xml2]; }; + SBMLR = derive2 { name="SBMLR"; version="2.0.0"; sha256="1h0pwlq229hbvh6ab2sjv67zd24i15xn4jh7k8s64faw4gw8ji14"; depends=[deSolve XML]; }; + SC3 = derive2 { name="SC3"; version="1.32.0"; sha256="0ylpk7jjqmy7g1s5ah5zwrcmqplhjm0rpnw74kn5mdra3d7xdsnr"; depends=[BiocGenerics cluster doParallel doRNG e1071 foreach ggplot2 pheatmap Rcpp RcppArmadillo robustbase ROCR rrcov S4Vectors shiny SingleCellExperiment SummarizedExperiment WriteXLS]; }; + SCAN_UPC = derive2 { name="SCAN.UPC"; version="2.46.0"; sha256="1awsy1xfsl90yxqc2qir7p51d34jddcqg5q02cc0925w6yqanaci"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; }; + SCANVIS = derive2 { name="SCANVIS"; version="1.18.0"; sha256="0nywyi5bp3qgh9xaydhpsdh5nvq0ybfvjqhygrs7lypanj4n1k7p"; depends=[IRanges plotrix RCurl rtracklayer]; }; + SCArray = derive2 { name="SCArray"; version="1.12.0"; sha256="1a5343azhqfagkf2cbszaisn505aqc49hxki42qb92n5x3bgqbnb"; depends=[BiocParallel BiocSingular DelayedArray DelayedMatrixStats gdsfmt Matrix S4Vectors SingleCellExperiment SummarizedExperiment]; }; + SCArray_sat = derive2 { name="SCArray.sat"; version="1.4.0"; sha256="0y94f6rbjzn2jqkww808vysfdk6j3qw81v79w087d3adiywkl9xj"; depends=[BiocGenerics BiocParallel BiocSingular DelayedArray gdsfmt Matrix S4Vectors SCArray Seurat SeuratObject SummarizedExperiment]; }; + SCBN = derive2 { name="SCBN"; version="1.22.0"; sha256="0bf18gc9ysi35x73ij4s4r3zmg0vys4hy4gy2x0hkxlrm4gpgx4r"; depends=[]; }; + SCFA = derive2 { name="SCFA"; version="1.14.0"; sha256="1avbvkky6m5f5cbfbhabapidz6ypngddrkg2dss7y0a7gy48634x"; depends=[BiocParallel cluster coro glmnet igraph Matrix matrixStats psych RhpcBLASctl survival torch]; }; + SCOPE = derive2 { name="SCOPE"; version="1.16.0"; sha256="1x7kad59rav9rrjkqkdfbziflx3bngclz4mwkfkf53yl8km62pw0"; depends=[BiocGenerics Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DescTools DNAcopy doParallel foreach GenomeInfoDb GenomicRanges gplots IRanges RColorBrewer Rsamtools S4Vectors]; }; + SCnorm = derive2 { name="SCnorm"; version="1.26.0"; sha256="11q8g6fmsib4ms2ks003v9qc8n4rzchbcd02xnbah97qgxrmicbm"; depends=[BiocGenerics BiocParallel cluster data_table forcats ggplot2 moments quantreg S4Vectors SingleCellExperiment SummarizedExperiment]; }; + SDAMS = derive2 { name="SDAMS"; version="1.24.0"; sha256="088k6bxdmkwv4zw8pvj2f4hl4b5jhrmlnvsh9mcqga7pmf5ir96b"; depends=[qvalue SummarizedExperiment trust]; }; + SELEX = derive2 { name="SELEX"; version="1.36.0"; sha256="0j4y7mijxgkcj89q1qf0ab9rmsaxzmvbxlnpy0x29bam424vzc73"; depends=[Biostrings rJava]; }; + SEtools = derive2 { name="SEtools"; version="1.18.0"; sha256="0j4pn85icyf1jwcfjr8r9049lrhglp3s5ighmcp9hvsjws04scis"; depends=[BiocParallel circlize data_table DESeq2 edgeR Matrix openxlsx pheatmap S4Vectors sechm SummarizedExperiment sva]; }; + SGSeq = derive2 { name="SGSeq"; version="1.38.0"; sha256="1i3dg3fn648mzy49m15vbzr3wfnk91xyph5j4sc7ss978l25h17n"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer RUnit S4Vectors SummarizedExperiment]; }; + SIAMCAT = derive2 { name="SIAMCAT"; version="2.8.0"; sha256="00l9w395fg6r8p2jzz85x1djlj4h7y86dgs8x5xf14bn1am9q0sh"; depends=[beanplot corrplot glmnet gridBase gridExtra infotheo lgr LiblineaR lmerTest matrixStats mlr3 mlr3learners mlr3tuning paradox phyloseq pROC progress PRROC RColorBrewer scales stringr]; }; + SICtools = derive2 { name="SICtools"; version="1.34.0"; sha256="0ymk18aj4r0526xqqkrvd75p4jrgrq2wshx7mqh2wj7nizjfn8fv"; depends=[Biostrings doParallel GenomicRanges IRanges matrixStats plyr Rsamtools stringr]; }; + SIM = derive2 { name="SIM"; version="1.74.0"; sha256="01mvdwhbpikpg8vfxr73nsshdr185ds80yjavzss53cwkv6zvp4h"; depends=[globaltest quantreg quantsmooth]; }; + SIMAT = derive2 { name="SIMAT"; version="1.36.0"; sha256="1gwcr7lfsnzvlx0v93adlxmzdcx9rwfmhacpz3m8q26jm4vjmqib"; depends=[ggplot2 mzR Rcpp reshape2]; }; + SIMD = derive2 { name="SIMD"; version="1.22.0"; sha256="1sw7mw4nravw4v9mhfcppnz0867szaynjs10lhpjs2a0p6mll0px"; depends=[edgeR methylMnM statmod]; }; + SIMLR = derive2 { name="SIMLR"; version="1.30.0"; sha256="18mld0yvkmy1znsv3dkch6f8x9h9j20zm3qq84ggw0wsbgrrcm1z"; depends=[Matrix pracma Rcpp RcppAnnoy RSpectra]; }; + SLqPCR = derive2 { name="SLqPCR"; version="1.70.0"; sha256="0xr0kjy2bn8cprj4p7c9bi7wsrvfx6bxymnvdz5c50s9hc35h2ky"; depends=[]; }; + SMAD = derive2 { name="SMAD"; version="1.20.0"; sha256="0rj4f38nlr3a5fmf0dqhqi7iln78lkvghv4w8yr2kcavnsl4lzar"; depends=[dplyr magrittr Rcpp RcppAlgos tidyr]; }; + SMITE = derive2 { name="SMITE"; version="1.32.0"; sha256="0dp4yas2gdwnvvbxdkid61j9c2a32cfcn3iw9nwijp6aqlv9rrv9"; depends=[AnnotationDbi Biobase BioNet geneLenDataBase GenomicRanges ggplot2 goseq Hmisc igraph IRanges KEGGREST org_Hs_eg_db plyr reactome_db S4Vectors scales]; }; + SNAGEE = derive2 { name="SNAGEE"; version="1.44.0"; sha256="001afmi0hpjih8h8dl5w0llmccgd9g7lrz80fs7m2f3avz9hf2lc"; depends=[SNAGEEdata]; }; + SNPRelate = derive2 { name="SNPRelate"; version="1.38.0"; sha256="0znk9vvnahkypmkrx82r1ryp41xr675b4ddpgx0nl3708xhncz5f"; depends=[gdsfmt]; }; + SNPediaR = derive2 { name="SNPediaR"; version="1.30.0"; sha256="1p33fmjdpscc42wicx23xg1jbg2m18msf4rhg9pr52n6yzr42b8v"; depends=[jsonlite RCurl]; }; + SNPhood = derive2 { name="SNPhood"; version="1.34.0"; sha256="1jniag2yq67y6s9cw8722a58k86i0nbksc2dxyv3pni2wwdka6r6"; depends=[BiocGenerics BiocParallel Biostrings checkmate cluster data_table DESeq2 GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges lattice RColorBrewer reshape2 Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; + SOMNiBUS = derive2 { name="SOMNiBUS"; version="1.12.0"; sha256="0p33r1ibpnln2rn4ls23prg7nmxznki9x7jc7qg3gc5fxip5b9n6"; depends=[annotatr BiocManager bsseq data_table GenomeInfoDb GenomicRanges ggplot2 IRanges Matrix mgcv reshape2 rtracklayer S4Vectors tidyr VGAM yaml]; }; + SPEM = derive2 { name="SPEM"; version="1.44.0"; sha256="0ysgwvx8wlq3b1qyw5dlsxxglvrmbahf4r98g6shv6y8pj50yhg7"; depends=[Biobase Rsolnp]; }; + SPIA = derive2 { name="SPIA"; version="2.56.0"; sha256="0ank9y5p21whqfni56kx662cli8508s6l89d83c54nimyn1kqs48"; depends=[KEGGgraph]; }; + SPIAT = derive2 { name="SPIAT"; version="1.6.0"; sha256="09bs0pm2gd8fgb2q5kihwnb3dgaxkwjxl86di7kdj0im5hyr0d1h"; depends=[apcluster dbscan dittoSeq dplyr ggplot2 gridExtra gtools mmand pracma RANN raster reshape2 rlang sp SpatialExperiment spatstat_explore spatstat_geom SummarizedExperiment tibble vroom]; }; + SPLINTER = derive2 { name="SPLINTER"; version="1.30.0"; sha256="1x9lak4s7rhllnczr4n7a88haq4a36pmxbrgd2m7v69nyzxlab9w"; depends=[biomaRt Biostrings BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 googleVis Gviz IRanges plyr pwalign S4Vectors seqLogo stringr]; }; + SPOTlight = derive2 { name="SPOTlight"; version="1.8.0"; sha256="08cnlm6l34gp2spy2x08jr6abm58wrana1930jzwvvgm0mql9nzb"; depends=[ggplot2 Matrix matrixStats NMF nnls SingleCellExperiment sparseMatrixStats]; }; + SPsimSeq = derive2 { name="SPsimSeq"; version="1.14.0"; sha256="09n39bgbx8xkngdc056lz1p20375w7fljmgnkg7vacjvp288y2pi"; depends=[edgeR fitdistrplus Hmisc limma mvtnorm phyloseq SingleCellExperiment WGCNA]; }; + SQLDataFrame = derive2 { name="SQLDataFrame"; version="1.18.0"; sha256="1fdf6dvrkg5cjnlh9466dnmqjfg7dq7dj06qjc61zyshlvslxlwh"; depends=[BiocGenerics DBI DelayedArray duckdb RSQLite S4Vectors]; }; + SRAdb = derive2 { name="SRAdb"; version="1.66.0"; sha256="0qvqixmn8am90a4n5ydva630kkxr735y6kdcikp1q0k8pxxvbm0j"; depends=[GEOquery graph RCurl RSQLite]; }; + STATegRa = derive2 { name="STATegRa"; version="1.40.0"; sha256="1m78hixyjavvryfcyd5g3f898r7hcn1cwdwbv3i2b9yj7z6r7knv"; depends=[affy Biobase calibrate edgeR foreach ggplot2 gplots gridExtra limma MASS]; }; + STRINGdb = derive2 { name="STRINGdb"; version="2.16.4"; sha256="02fim09w9s38hvgp1g3fxqabd5r2fjysljlfrya2nr17drqkzqyx"; depends=[gplots hash httr igraph plotrix plyr png RColorBrewer sqldf]; }; + STdeconvolve = derive2 { name="STdeconvolve"; version="1.8.0"; sha256="0pyyxmh4bnavsdw6riv72y5m8l53mfr0lpiy9mh0qn57rlmw5fr9"; depends=[BiocParallel clue ggplot2 Matrix mgcv reshape2 scatterpie slam topicmodels viridis]; }; + SUITOR = derive2 { name="SUITOR"; version="1.6.0"; sha256="0wricb7fi87lrmasljhz0l7ya22yq3a2c6654k4v3x11z9zb2pl6"; depends=[BiocParallel ggplot2]; }; + SVMDO = derive2 { name="SVMDO"; version="1.4.0"; sha256="11cn7kffgssbjk307vxjr6i2cs94fn6hhz09dbx5qgg89m4gsdgi"; depends=[AnnotationDbi BSDA caret caTools data_table DOSE dplyr e1071 golem klaR nortest org_Hs_eg_db shiny shinyFiles shinytitle sjmisc SummarizedExperiment survival]; }; + SWATH2stats = derive2 { name="SWATH2stats"; version="1.34.0"; sha256="052nzh5rhq3sp6vyibbiz2li32lnd5c719kqkdhwjsc8y3pcir00"; depends=[biomaRt data_table ggplot2 reshape2]; }; + SamSPECTRAL = derive2 { name="SamSPECTRAL"; version="1.58.0"; sha256="05r3gl6ai9x0g8l2zl1p8fz7phklna82w0csvaiy8p5063p71gla"; depends=[]; }; + Scale4C = derive2 { name="Scale4C"; version="1.26.0"; sha256="1h2swrs0vj9nzcr748jbk8c4bpnyc0gcq8bn5cyhd8lbd2b9xhv0"; depends=[GenomicRanges IRanges smoothie SummarizedExperiment]; }; + ScaledMatrix = derive2 { name="ScaledMatrix"; version="1.12.0"; sha256="0c6sp5nps31ygrr7lxxc2gbg19qsk107v23x8f6acqk1xwlsfppi"; depends=[DelayedArray Matrix S4Vectors]; }; + Sconify = derive2 { name="Sconify"; version="1.24.0"; sha256="07bz9bi71qxaipiw998jshm0wcwllhxfjmdxxxwg520rhmfs1g04"; depends=[dplyr flowCore FNN ggplot2 magrittr readr Rtsne tibble]; }; + ScreenR = derive2 { name="ScreenR"; version="1.6.0"; sha256="00zaca403yk2dhsxhch51zcv5iwjgpnpz495ly98wv64hsm8b671"; depends=[dplyr edgeR ggplot2 ggvenn limma magrittr patchwork purrr rlang scales stringr tibble tidyr tidyselect]; }; + SemDist = derive2 { name="SemDist"; version="1.38.0"; sha256="03qzsrxwnsb8spfmnsyiyz83r8476lq17n3a8hrm6i13hxdqps29"; depends=[annotate AnnotationDbi GO_db]; }; + SeqArray = derive2 { name="SeqArray"; version="1.44.0"; sha256="1g8867y66f8ihr0w2shc17wxnavnkwn9y25f850nwvnn9nsbk88k"; depends=[Biostrings gdsfmt GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + SeqGSEA = derive2 { name="SeqGSEA"; version="1.44.0"; sha256="0nxrl5ip289hqnp4g85njm55kpk81kr1l87la6r3r5h0qx5x01cy"; depends=[Biobase biomaRt DESeq2 doParallel]; }; + SeqGate = derive2 { name="SeqGate"; version="1.14.0"; sha256="1qmrjqv9iky9bwq1d6bmmn4wnqlw8g352i154fjhgpwl8zvl75jk"; depends=[BiocManager GenomicRanges S4Vectors SummarizedExperiment]; }; + SeqSQC = derive2 { name="SeqSQC"; version="1.26.0"; sha256="0xsgr7wfy9qyjffb6spm0szknk3rbcx89k1ypdymybnjmndcslqf"; depends=[e1071 ExperimentHub gdsfmt GenomicRanges GGally ggplot2 IRanges plotly RColorBrewer reshape2 rmarkdown S4Vectors SNPRelate]; }; + SeqVarTools = derive2 { name="SeqVarTools"; version="1.42.0"; sha256="1mx3b21595n1v1fhy7lv67kdlxc2qdmkj0lm8gdnrs0l5f88jpgy"; depends=[Biobase BiocGenerics data_table gdsfmt GenomicRanges GWASExactHW IRanges logistf Matrix S4Vectors SeqArray]; }; + SharedObject = derive2 { name="SharedObject"; version="1.18.0"; sha256="133bn22q0lbyfr9dmsv462wajmh9v3108w42fc16q97lf9nf2023"; depends=[BH BiocGenerics Rcpp]; }; + ShortRead = derive2 { name="ShortRead"; version="1.62.0"; sha256="0x5iqx2k2xs5rwjch0bpcb8pgc0nhb571991yahdr8hsxwbas3jm"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra pwalign Rhtslib Rsamtools S4Vectors XVector zlibbioc]; }; + SiPSiC = derive2 { name="SiPSiC"; version="1.4.0"; sha256="158sjiza9wqd5ipl3fm1gx63qas6j3rqlk6ayw5hnf0al1g64z5q"; depends=[Matrix SingleCellExperiment]; }; + SigCheck = derive2 { name="SigCheck"; version="2.36.0"; sha256="1bnvk2v1mh615xhqab6129bgvv24azq9h9r1n2b3msbadwd0by1d"; depends=[Biobase BiocParallel e1071 MLInterfaces survival]; }; + SigFuge = derive2 { name="SigFuge"; version="1.42.0"; sha256="1g262p2b0bapzvaknhnklxm6wvy1fdir631p34x433qvlwz9ss9i"; depends=[GenomicRanges ggplot2 matlab reshape sigclust]; }; + SigsPack = derive2 { name="SigsPack"; version="1.18.0"; sha256="1dq3zqbbz5wbw2yf8w1sjgf1kd1nxap808ydvjr63zn10rm6m3vm"; depends=[Biobase Biostrings BSgenome GenomeInfoDb GenomicRanges quadprog rtracklayer SummarizedExperiment VariantAnnotation]; }; + SimBu = derive2 { name="SimBu"; version="1.6.0"; sha256="1may613jla4id0g9w4nxsfqm36ma82gmzykvnifi5hwa63jvi7pb"; depends=[basilisk BiocParallel data_table dplyr ggplot2 Matrix phyloseq proxyC RColorBrewer RCurl reticulate sparseMatrixStats SummarizedExperiment tidyr]; }; + SimFFPE = derive2 { name="SimFFPE"; version="1.16.0"; sha256="1ccdk4g16bh1j420dspnh6il98j6ck6w2vgmqi82mf6js3cakd2z"; depends=[Biostrings doParallel dplyr foreach GenomicRanges IRanges Rsamtools truncnorm]; }; + SingleCellAlleleExperiment = derive2 { name="SingleCellAlleleExperiment"; version="1.0.0"; sha256="02dp5xcp7h93cl5k65qpwgcd4ygimcv5im9s9zqzpzmsf3q8gd5l"; depends=[BiocParallel DelayedArray Matrix S4Vectors SingleCellExperiment SummarizedExperiment]; }; + SingleCellExperiment = derive2 { name="SingleCellExperiment"; version="1.26.0"; sha256="09sbk0r9g55x8fbvv5rbrygdw3km4bbrj9x0abqwld2nxnxq1q3n"; depends=[BiocGenerics DelayedArray GenomicRanges S4Vectors SummarizedExperiment]; }; + SingleCellSignalR = derive2 { name="SingleCellSignalR"; version="1.16.0"; sha256="0w7zj2fb45hzjx44kgn9qs3ab69v29vpl41nxvy931m32ndl5j04"; depends=[BiocManager circlize data_table edgeR foreach gplots igraph limma multtest pheatmap Rtsne scran stringr]; }; + SingleMoleculeFootprinting = derive2 { name="SingleMoleculeFootprinting"; version="1.12.0"; sha256="1hyqnzz05f2i0r2b5qs1j58py3b042aiffyd6ns2hkrgnr62yldw"; depends=[BiocGenerics Biostrings BSgenome data_table GenomeInfoDb GenomicRanges IRanges plyr QuasR RColorBrewer]; }; + SingleR = derive2 { name="SingleR"; version="2.6.0"; sha256="0l33bsi1zfj7f4hzlivhh89phhx0qscrwd08c28mqvcyp91mhq16"; depends=[beachmat BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats Matrix Rcpp S4Vectors SummarizedExperiment]; }; + SomaticSignatures = derive2 { name="SomaticSignatures"; version="2.40.0"; sha256="0yvn2famnyxkxnw4r1vr0vma6ym9kb343vqgaqkvcp3zpm1fi0p8"; depends=[Biobase Biostrings GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges NMF pcaMethods proxy reshape2 S4Vectors VariantAnnotation]; }; + SpaceMarkers = derive2 { name="SpaceMarkers"; version="1.0.0"; sha256="02pb6jka0irzxmw0bzjns7jfc9jbbslg3c1xxjq1v9zf3s3is21a"; depends=[ape hdf5r jsonlite Matrix matrixStats matrixTests qvalue rstatix spatstat_explore spatstat_geom]; }; + SpacePAC = derive2 { name="SpacePAC"; version="1.42.0"; sha256="0a445gvv0x6c8765p5fjmd21i8ivnqr0jkzz6cczwkds7m0436az"; depends=[iPAC]; }; + Spaniel = derive2 { name="Spaniel"; version="1.18.0"; sha256="03iil9iyvv9sqmkpi3hn1vqx7a2187h1ng7bzfs302dj9dpcqfaj"; depends=[dplyr DropletUtils ggplot2 igraph jpeg jsonlite magrittr png S4Vectors scater scran Seurat shiny SingleCellExperiment SummarizedExperiment]; }; + SparseArray = derive2 { name="SparseArray"; version="1.4.8"; sha256="1ahwv6ih1700h1sccv9wh7hr5bhdif0ji5jbmsprnhjxfgn6xidm"; depends=[BiocGenerics IRanges Matrix MatrixGenerics matrixStats S4Arrays S4Vectors XVector]; }; + SparseSignatures = derive2 { name="SparseSignatures"; version="2.14.0"; sha256="1wq1vs94pw2zb896pn6z1zk67adrqwlhrcy1sp3s3m9jw0yaiqbw"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges NMF nnlasso nnls reshape2]; }; + SpatialCPie = derive2 { name="SpatialCPie"; version="1.20.0"; sha256="0pj6m66a1qw3hi37qa4k7gpl1b8r731v9wflzr0q1yw9gwl99nh8"; depends=[colorspace data_table digest dplyr ggforce ggiraph ggplot2 ggrepel igraph lpSolve purrr readr rlang shiny shinycssloaders shinyjs shinyWidgets SummarizedExperiment tibble tidyr tidyselect zeallot]; }; + SpatialDecon = derive2 { name="SpatialDecon"; version="1.14.0"; sha256="0p49dwp380d642xkx92wlan70crb3jinsiawnkiif6i6ry7xdxjd"; depends=[Biobase GeomxTools logNormReg Matrix repmis SeuratObject]; }; + SpatialExperiment = derive2 { name="SpatialExperiment"; version="1.14.0"; sha256="0f04azs6wscibcpbmc1m21wjswmgr2b8gvd1n2yavya1li0xxm4r"; depends=[BiocFileCache BiocGenerics magick rjson S4Vectors SingleCellExperiment SummarizedExperiment]; }; + SpatialFeatureExperiment = derive2 { name="SpatialFeatureExperiment"; version="1.6.1"; sha256="0p7wqhn72p538wrlkd51mac87sjd5bh2k0k9vkvvvpfls02vfx01"; depends=[Biobase BiocGenerics BiocNeighbors BiocParallel data_table DropletUtils EBImage lifecycle Matrix rjson rlang S4Vectors sf sfheaders SingleCellExperiment SpatialExperiment spdep SummarizedExperiment terra zeallot]; }; + SpatialOmicsOverlay = derive2 { name="SpatialOmicsOverlay"; version="1.4.0"; sha256="041kdamj3whw24c6075n0f1xxxba160s3c3kq2z7dqxwzks1k6rz"; depends=[base64enc Biobase BiocFileCache data_table dplyr EBImage GeomxTools ggplot2 ggtext magick pbapply plotrix RBioFormats readxl S4Vectors scattermore stringr XML]; }; + SpeCond = derive2 { name="SpeCond"; version="1.58.0"; sha256="0gj9f0rycd4d8ixmivgy4ijs9pikjyhsj47k5hi8lgk9w7hnk8p4"; depends=[Biobase fields hwriter mclust RColorBrewer]; }; + Spectra = derive2 { name="Spectra"; version="1.14.1"; sha256="0mvfndd7n7varrzmv9cd3ygwbdn97x5qcgmzcxc6hr76lnkwp8al"; depends=[BiocGenerics BiocParallel fs IRanges MetaboCoreUtils MsCoreUtils ProtGenerics S4Vectors]; }; + SpectralTAD = derive2 { name="SpectralTAD"; version="1.20.0"; sha256="0rk15gs7bs5xhgl0k5qa0zyh0dcd2pr5qmqcrzvfh49bhbaylqbx"; depends=[BiocParallel cluster dplyr GenomicRanges HiCcompare magrittr Matrix PRIMME]; }; + SpliceWiz = derive2 { name="SpliceWiz"; version="1.6.0"; sha256="11pad2gdra4bq6is34d7981f6vb4wzsmvihgf08514d1598qn1cc"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats DT fst genefilter GenomeInfoDb GenomicRanges ggplot2 HDF5Array heatmaply htmltools IRanges magrittr matrixStats NxtIRFdata ompBAM patchwork pheatmap plotly progress R_utils RColorBrewer Rcpp RcppProgress rhandsontable rhdf5 rtracklayer rvest S4Vectors scales shiny shinydashboard shinyFiles shinyWidgets stringi SummarizedExperiment zlibbioc]; }; + SplicingFactory = derive2 { name="SplicingFactory"; version="1.12.0"; sha256="1iwkkbxviain77a64x41hc97c9bl77ayjpbjpkvmhwjh4hfdl9b7"; depends=[SummarizedExperiment]; }; + SplicingGraphs = derive2 { name="SplicingGraphs"; version="1.44.0"; sha256="1k4j23i7ffw1q18y48jhhj7g5k3vjihq619np2y7p7xc9wv0d45g"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph igraph IRanges Rgraphviz Rsamtools S4Vectors]; }; + SpotClean = derive2 { name="SpotClean"; version="1.6.1"; sha256="1wq1igfyadmzszacnwx8rfhm82xslzqzjkvx6xigs1fng0c7yn61"; depends=[dplyr ggplot2 Matrix RColorBrewer readbitmap rhdf5 rjson rlang S4Vectors Seurat SpatialExperiment SummarizedExperiment tibble viridis]; }; + SpotSweeper = derive2 { name="SpotSweeper"; version="1.0.0"; sha256="1jkc37ymip3r29fh041mfa2bq17qhxq7mp0i35zrjh2lzm83qxas"; depends=[BiocNeighbors escheR ggplot2 MASS SingleCellExperiment spatialEco SpatialExperiment SummarizedExperiment]; }; + Statial = derive2 { name="Statial"; version="1.6.0"; sha256="0lzr0vc4zl5ryhs17l866w261ya9kxm7hx86g6xv16wr6fbw3mgv"; depends=[BiocParallel concaveman data_table dplyr ggplot2 limma magrittr plotly purrr ranger S4Vectors SingleCellExperiment SpatialExperiment spatstat_explore spatstat_geom stringr SummarizedExperiment tibble tidyr tidyselect]; }; + Streamer = derive2 { name="Streamer"; version="1.50.0"; sha256="0biizsjg9ysr2d1kyh962znikvgwli0zf0jn8khbs4prakjxmjyn"; depends=[BiocGenerics graph RBGL]; }; + Structstrings = derive2 { name="Structstrings"; version="1.20.0"; sha256="1ka9kixhgc9vfar18fzd8vd5ydmdkqa2s6xsmhlh927zrijs3vz9"; depends=[BiocGenerics Biostrings crayon IRanges S4Vectors stringi stringr XVector]; }; + StructuralVariantAnnotation = derive2 { name="StructuralVariantAnnotation"; version="1.20.0"; sha256="0hnpa6ykfasp2hshqdny29dyw6y9dib4rsm379fm7n8iami1rjp1"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges pwalign rlang rtracklayer S4Vectors stringr SummarizedExperiment VariantAnnotation]; }; + SubCellBarCode = derive2 { name="SubCellBarCode"; version="1.20.0"; sha256="1r4w6mbzfsgf6bd0x5g8chjqji7dll2vjdvzrlbzgdhb710hmil0"; depends=[AnnotationDbi caret e1071 ggplot2 ggrepel gridExtra networkD3 org_Hs_eg_db Rtsne scatterplot3d]; }; + SummarizedExperiment = derive2 { name="SummarizedExperiment"; version="1.34.0"; sha256="02cvgq2vgg0gz1gxkc4vnr9jg4wkj32bl5a1qyv77wnw2b2v5hp0"; depends=[Biobase BiocGenerics DelayedArray GenomeInfoDb GenomicRanges IRanges Matrix MatrixGenerics S4Arrays S4Vectors]; }; + Summix = derive2 { name="Summix"; version="2.10.0"; sha256="01ri56flnhca5bkl2j5mc3siqpwhi0771h742xjwssbk1rmcp5im"; depends=[BEDASSLE dplyr magrittr nloptr randomcoloR scales tibble tidyselect visNetwork]; }; + SurfR = derive2 { name="SurfR"; version="1.0.0"; sha256="0qbvwjcrxkv0as18af6436fi1i19gbvyj22fgglxmbmckxfwv14b"; depends=[assertr BiocFileCache BiocStyle biomaRt DESeq2 dplyr edgeR enrichR ggplot2 ggrepel gridExtra httr knitr magrittr metaRNASeq openxlsx rhdf5 scales SPsimSeq stringr SummarizedExperiment TCGAbiolinks tidyr venn]; }; + SwathXtend = derive2 { name="SwathXtend"; version="2.26.0"; sha256="11k6a5m73pj49ahync5773w4wbz5mb27nss531nbqj738lnfidv4"; depends=[e1071 lattice openxlsx VennDiagram]; }; + SynExtend = derive2 { name="SynExtend"; version="1.16.0"; sha256="1nikkhwyh61mhjxhrg4f1g402rzm9lc7jbaclcpp6v2rmd9dxqmw"; depends=[Biostrings DBI DECIPHER IRanges RSQLite S4Vectors]; }; + SynMut = derive2 { name="SynMut"; version="1.20.0"; sha256="075r77ih2k29hl7ccn3v6104fk4spk733ph6jp2zxjimffnj7rj5"; depends=[BiocGenerics Biostrings seqinr stringr]; }; + TADCompare = derive2 { name="TADCompare"; version="1.14.0"; sha256="1k80xwbc3h4994f8j5qr52rn2hk2l5qz1196r1kpn6m47h80fq6c"; depends=[cluster cowplot dplyr ggplot2 ggpubr HiCcompare magrittr Matrix PRIMME RColorBrewer reshape2 tidyr]; }; + TAPseq = derive2 { name="TAPseq"; version="1.16.0"; sha256="0nz70a68cn8is0hp8srp7clqwwnr045mpibz4yazskia7lhbm73i"; depends=[BiocGenerics BiocParallel Biostrings BSgenome dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges S4Vectors tidyr]; }; + TBSignatureProfiler = derive2 { name="TBSignatureProfiler"; version="1.16.0"; sha256="1vjd9dwnr6m867d1ax6kwj4w5qs5y81fzrnnjl6xkl2ch3g48jpk"; depends=[ASSIGN BiocParallel ComplexHeatmap DESeq2 DT edgeR gdata ggplot2 GSVA magrittr RColorBrewer reshape2 rlang ROCit S4Vectors singscore SummarizedExperiment]; }; + TCC = derive2 { name="TCC"; version="1.44.0"; sha256="0j9b6q7h3w7kcpwbc3f9aabj8jrh5hwpx8rnd415rq7fakq3ix6p"; depends=[DESeq2 edgeR ROC]; }; + TCGAbiolinks = derive2 { name="TCGAbiolinks"; version="2.32.0"; sha256="1br2dxi5rvl8z5myrnj4dnfh8xgksrqjyy0fsqh3vjspifvis4ih"; depends=[biomaRt data_table downloader dplyr GenomicRanges ggplot2 httr IRanges jsonlite knitr plyr purrr R_utils readr rvest S4Vectors stringr SummarizedExperiment TCGAbiolinksGUI_data tibble tidyr XML xml2]; }; + TCGAutils = derive2 { name="TCGAutils"; version="1.24.0"; sha256="0fmz1lfpn8ws584q4xlicg897qs36wgr78crw0d9415ci6qqb4r8"; depends=[AnnotationDbi BiocBaseUtils BiocGenerics GenomeInfoDb GenomicDataCommons GenomicFeatures GenomicRanges IRanges MultiAssayExperiment RaggedExperiment rvest S4Vectors stringr SummarizedExperiment xml2]; }; + TCseq = derive2 { name="TCseq"; version="1.28.0"; sha256="014al1b58rkfy1cqxwf3xgzrbdvqv2x3ac2clqmj1262ygrmiw5v"; depends=[BiocGenerics cluster e1071 edgeR GenomicAlignments GenomicRanges ggplot2 IRanges locfit reshape2 Rsamtools SummarizedExperiment]; }; + TDbasedUFE = derive2 { name="TDbasedUFE"; version="1.4.0"; sha256="1q1ljwwkhkqq2pbzm60kkhyqrqixljcw0vqajbpwk68gmc8sxwyz"; depends=[GenomicRanges MOFAdata readr rTensor shiny tximport tximportData]; }; + TDbasedUFEadv = derive2 { name="TDbasedUFEadv"; version="1.4.0"; sha256="1iiil5vn95bsldxigjlyqraivrnwlajkn18y0880qinrbfcwpidz"; depends=[Biobase DOSE enrichplot enrichR GenomicRanges hash RTCGA rTensor shiny STRINGdb TDbasedUFE]; }; + TEKRABber = derive2 { name="TEKRABber"; version="1.8.0"; sha256="0ivbj063awdh41ldj6cl68ydx8y4jv8wzwwxr67iwhxdgpcwlwx8"; depends=[apeglm biomaRt DESeq2 doParallel dplyr foreach GenomeInfoDb magrittr Rcpp rtracklayer SCBN]; }; + TENxIO = derive2 { name="TENxIO"; version="1.6.0"; sha256="1bghch637h2cckkb8czzjnvn4vlh4cjk8izy6079wq8p39zr10fx"; depends=[BiocBaseUtils BiocGenerics BiocIO GenomeInfoDb GenomicRanges Matrix MatrixGenerics R_utils RCurl readr S4Vectors SingleCellExperiment SummarizedExperiment]; }; + TEQC = derive2 { name="TEQC"; version="4.26.0"; sha256="1cvc4lrnhkr5l5x0cpjmzxj449lmkw337a8gpan73yvj2p0r7axg"; depends=[Biobase BiocGenerics hwriter IRanges Rsamtools]; }; + TFARM = derive2 { name="TFARM"; version="1.26.0"; sha256="1l2763lxgda628i6abl2hp5ghxzzw1lk3zmd15aibf8rfl9cghha"; depends=[arules fields GenomicRanges gplots stringr]; }; + TFBSTools = derive2 { name="TFBSTools"; version="1.42.0"; sha256="0bmmsgmx7159bdrflykkis0v4z1ixwlnmw1kx0y0kw15lw3cjnsh"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome caTools CNEr DBI DirichletMultinomial GenomeInfoDb GenomicRanges gtools IRanges pwalign RSQLite rtracklayer S4Vectors seqLogo TFMPvalue XML XVector]; }; + TFEA_ChIP = derive2 { name="TFEA.ChIP"; version="1.24.0"; sha256="0xn176h7dfb3sbg913xzwj3c2ymzf7i0y2an19zjvynk49xq12ph"; depends=[biomaRt dplyr GenomicFeatures GenomicRanges IRanges org_Hs_eg_db R_utils]; }; + TFHAZ = derive2 { name="TFHAZ"; version="1.26.0"; sha256="1d1b1ylrqkskxkmyfjh1334kdmn0j6h5wdwcafaly1rkr4kihpl0"; depends=[GenomicRanges IRanges ORFik S4Vectors]; }; + TFutils = derive2 { name="TFutils"; version="1.24.0"; sha256="0n0szdh09zr7866pl6y5zps6izlylhh1n20zkv7xsaq91hsw9g52"; depends=[AnnotationDbi BiocFileCache dplyr DT GSEABase httr magrittr miniUI org_Hs_eg_db readxl rjson Rsamtools shiny]; }; + TIN = derive2 { name="TIN"; version="1.36.0"; sha256="06dmy5yjskaisibbr4qlw7bdbwj8v1b09c28v4wzd86a2554hywp"; depends=[aroma_affymetrix data_table impute squash stringr WGCNA]; }; + TMixClust = derive2 { name="TMixClust"; version="1.26.0"; sha256="0p88kdl9v2q6wabr31v26q0612qcw1q5s71zbanamx0s2xsvyjgh"; depends=[Biobase BiocParallel cluster flexclust gss mvtnorm SPEM zoo]; }; + TOAST = derive2 { name="TOAST"; version="1.18.0"; sha256="0srjx9z59a65nhrxbzxzxnkyn28zskc6z4p8drihq1lhw6mvdp4r"; depends=[corpcor doParallel EpiDISH GGally ggplot2 limma nnls quadprog SummarizedExperiment tidyr]; }; + TOP = derive2 { name="TOP"; version="1.4.0"; sha256="1lj7a9kry3ca2iz231si0vfxbnib5wqj5x4ldvb1l1wfjhdf4x2p"; depends=[assertthat caret ClassifyR directPA doParallel dplyr ggnewscale ggplot2 ggraph ggrepel ggthemes glmnet Hmisc igraph latex2exp limma magrittr plotly pROC purrr reshape2 statmod stringr survival tibble tidygraph tidyr]; }; + TPP = derive2 { name="TPP"; version="3.32.0"; sha256="1pfnk9zfd7d8ysiiawj1xbcq7vck5xs25jy2rz94mpwvgpxkvkif"; depends=[Biobase biobroom broom data_table doParallel dplyr foreach futile_logger ggplot2 gridExtra knitr limma magrittr MASS mefa nls2 openxlsx plyr purrr RColorBrewer RCurl reshape2 rmarkdown stringr tibble tidyr VennDiagram VGAM]; }; + TPP2D = derive2 { name="TPP2D"; version="1.20.0"; sha256="1r9fgxd6jx0py4727yzcn73hr3x7rjxmi5yli57wyd07hk0p3w0y"; depends=[BiocParallel doParallel dplyr foreach ggplot2 limma MASS openxlsx RCurl stringr tidyr]; }; + TREG = derive2 { name="TREG"; version="1.8.0"; sha256="0yf2fmswkl01ymr1zy23d2xg8j8vb5q28grqb0r83b11rkxhfhqm"; depends=[Matrix purrr rafalib SummarizedExperiment]; }; + TRESS = derive2 { name="TRESS"; version="1.10.0"; sha256="1dv6xr625gr7jf7rk7fxhfyxgkrkc71mdc3fvzi98r23sk1h62xq"; depends=[AnnotationDbi GenomicFeatures GenomicRanges IRanges Matrix matrixStats Rsamtools rtracklayer S4Vectors]; }; + TRONCO = derive2 { name="TRONCO"; version="2.36.0"; sha256="1dliwyjsvwr6cjf4cp3w7h46ac4fzd7hnfw4nsb330ajdr38ri0y"; depends=[bnlearn circlize doParallel foreach gridExtra gtable gtools igraph iterators R_matlab RColorBrewer Rgraphviz scales xtable]; }; + TSAR = derive2 { name="TSAR"; version="1.2.0"; sha256="1bnyrrc92m4v35ar640pnm1fb3cq3hlp8lpwicrzbv8dvyzsxw43"; depends=[dplyr ggplot2 ggpubr jsonlite magrittr mgcv minpack_lm openxlsx plotly readxl rhandsontable shiny shinyjs shinyWidgets stringr tidyr]; }; + TSCAN = derive2 { name="TSCAN"; version="1.42.0"; sha256="1s80n1yjmshy59ls607hp8hpq56hllbh0a4mbgvxd8bqh4njfc0j"; depends=[combinat DelayedArray fastICA ggplot2 gplots igraph Matrix mclust mgcv plyr S4Vectors shiny SingleCellExperiment SummarizedExperiment TrajectoryUtils]; }; + TTMap = derive2 { name="TTMap"; version="1.26.0"; sha256="0988hy3hr3cf7snj7k7d0gl0w4qg7ssk53pmvvng171b82m6szqw"; depends=[Biobase colorRamps rgl SummarizedExperiment]; }; + TVTB = derive2 { name="TVTB"; version="1.30.0"; sha256="0in5l9nq0br7c1n546wn29av5m25xxc82hvns5z8mshnnlk59pmn"; depends=[AnnotationFilter BiocGenerics BiocParallel Biostrings ensembldb ensemblVEP GenomeInfoDb GenomicRanges GGally ggplot2 Gviz IRanges limma reshape2 Rsamtools S4Vectors SummarizedExperiment VariantAnnotation]; }; + TargetDecoy = derive2 { name="TargetDecoy"; version="1.10.0"; sha256="1gys5v5sb3ypip82q9gw21dg5whllqdhh8i9zy48qrg4mh2jby1s"; depends=[ggplot2 ggpubr miniUI mzID mzR shiny]; }; + TargetScore = derive2 { name="TargetScore"; version="1.42.0"; sha256="124fy7q7y37jxasvnlk8sfkw307qs1wyafxvs3fmb3f3impffxsz"; depends=[Matrix pracma]; }; + TargetSearch = derive2 { name="TargetSearch"; version="2.6.1"; sha256="1q6v6pfkpcm23a39vgp9ysbqa6wwkwv9dgnxd6m8gjlq3azgsnf6"; depends=[assertthat ncdf4]; }; + TileDBArray = derive2 { name="TileDBArray"; version="1.14.0"; sha256="1hgwcxffg50nfjb3bpl00h7vhmfs1x15ly7sd0lpcnamk7f9c003"; depends=[DelayedArray Rcpp S4Vectors tiledb]; }; + TissueEnrich = derive2 { name="TissueEnrich"; version="1.24.1"; sha256="02amlvaf5v30x2swxhi4na4c623v00gb3q1bvlcqias9gaaizzim"; depends=[dplyr ggplot2 GSEABase SummarizedExperiment tidyr]; }; + TitanCNA = derive2 { name="TitanCNA"; version="1.42.0"; sha256="18ihvqn07g677r3facf43m69bnjx4i0s6w41h4mdn82hal0pfsx0"; depends=[BiocGenerics data_table dplyr foreach GenomeInfoDb GenomicRanges IRanges VariantAnnotation]; }; + ToxicoGx = derive2 { name="ToxicoGx"; version="2.8.0"; sha256="0b34d5js6w50bm5cl5v8ppfc0lljsbm1zbrqlc5qifc8lcyliq8a"; depends=[assertthat Biobase BiocGenerics BiocParallel caTools CoreGx data_table downloader dplyr ggplot2 jsonlite limma magrittr reshape2 S4Vectors scales SummarizedExperiment tibble tidyr]; }; + TrajectoryGeometry = derive2 { name="TrajectoryGeometry"; version="1.12.0"; sha256="102mhg46s6s95j98wsy0r6327riqhb5jcdzmksiwphsdpsp9c16s"; depends=[ggplot2 pracma rgl]; }; + TrajectoryUtils = derive2 { name="TrajectoryUtils"; version="1.12.0"; sha256="15q1mq48nclf2lqc2v769q79frrbm2l65d54vcqg06b861q2wq9h"; depends=[igraph Matrix S4Vectors SingleCellExperiment SummarizedExperiment]; }; + TransView = derive2 { name="TransView"; version="1.48.0"; sha256="1bk4h1sh2xdm67mkzsg2l0kgg88m5z39hxmshh0j2bybyyy07jkp"; depends=[BiocGenerics GenomicRanges gplots IRanges Rhtslib S4Vectors zlibbioc]; }; + TreeAndLeaf = derive2 { name="TreeAndLeaf"; version="1.16.0"; sha256="0fm1v6w73vs99smqk8i8b85pr38zlbpgyby6qh3s0xslxbyk6b32"; depends=[ape igraph RedeR]; }; + TreeSummarizedExperiment = derive2 { name="TreeSummarizedExperiment"; version="2.12.0"; sha256="0ygzw9nba5pxgrbib8sm7qwhzzm8m038banb0z7n42vkb1cb3d5i"; depends=[ape BiocGenerics BiocParallel Biostrings dplyr IRanges rlang S4Vectors SingleCellExperiment SummarizedExperiment treeio]; }; + Trendy = derive2 { name="Trendy"; version="1.26.0"; sha256="172hcq9zxah3m55j3kzpg5hvr06d656j1s8j3jcvksc0f3l9r990"; depends=[BiocParallel DT gplots magrittr S4Vectors segmented shiny shinyFiles SummarizedExperiment]; }; + TurboNorm = derive2 { name="TurboNorm"; version="1.52.0"; sha256="13096cp69y6vkn0gm13ssyzgp7fhvqggnipigdfdrpmvf8gcl881"; depends=[affy convert lattice limma marray]; }; + TypeInfo = derive2 { name="TypeInfo"; version="1.70.0"; sha256="0sx9z1wnlh6sj8gww0mxwavggkgj4zk23z8509pbch36acr6fgls"; depends=[]; }; + UCSC_utils = derive2 { name="UCSC.utils"; version="1.0.0"; sha256="0w9f5xd6ryniapbpcrpczn8wimph2154w45cvdgqfa3dv5qy379l"; depends=[httr jsonlite S4Vectors]; }; + UCell = derive2 { name="UCell"; version="2.8.0"; sha256="09r64rrydwgvvvq8f5vzvn7dsh24l9sa1if21wcimrl28ci1g1mv"; depends=[BiocNeighbors BiocParallel data_table Matrix SingleCellExperiment SummarizedExperiment]; }; + UMI4Cats = derive2 { name="UMI4Cats"; version="1.14.0"; sha256="1cf2jsmhsmw6i381wxnb0zsyhkr2mjlxlzpjnlfxyf4kr6n8k797"; depends=[annotate BiocFileCache BiocGenerics Biostrings BSgenome cowplot DESeq2 dplyr fda GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges magick magrittr org_Hs_eg_db R_utils rappdirs Rbowtie2 RColorBrewer regioneR reshape2 rlang Rsamtools S4Vectors scales ShortRead stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene zoo]; }; + UNDO = derive2 { name="UNDO"; version="1.46.0"; sha256="1h7bri3hkl99gll5vpamgp7x60afdmq8h1mqw4plr9ypxv2kljpj"; depends=[Biobase BiocGenerics boot MASS nnls]; }; + UPDhmm = derive2 { name="UPDhmm"; version="1.0.0"; sha256="0qa6d3c2gvhfq5shgdpsgzrghx8jwpvx6an8rvidl5p7nzhhdjgi"; depends=[GenomicRanges HMM IRanges S4Vectors VariantAnnotation]; }; + Ularcirc = derive2 { name="Ularcirc"; version="1.22.0"; sha256="0qzkvwg3gd9v9cqf3hmmyh4gzdqs5m6nxjjbnhqsdp6wshccdv4p"; depends=[AnnotationDbi AnnotationHub BiocGenerics Biostrings BSgenome data_table DT GenomeInfoDb GenomeInfoDbData GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel gsubfn mirbase_db moments Organism_dplyr plotgardener R_utils S4Vectors shiny shinydashboard shinyFiles shinyjs yaml]; }; + UniProt_ws = derive2 { name="UniProt.ws"; version="2.44.0"; sha256="1vcbphksaanggig1yfmrihhw1a4fmy1cl7yq5w3z3lb6zik5rgx8"; depends=[AnnotationDbi BiocBaseUtils BiocFileCache BiocGenerics httpcache httr jsonlite progress rjsoncons RSQLite]; }; + Uniquorn = derive2 { name="Uniquorn"; version="2.24.0"; sha256="1f2hp395gfxnrf9mg8kqd6cjr9b651gzrj2bcfv5hx2qh0mh1z75"; depends=[data_table doParallel foreach GenomicRanges IRanges R_utils stringr VariantAnnotation WriteXLS]; }; + VAExprs = derive2 { name="VAExprs"; version="1.10.0"; sha256="0mcdh0xsqjpc3nj1xfps3y2r62ayh8ykgpyblqxp2n52f781hcbx"; depends=[CatEncoders DeepPINCS DiagrammeR keras mclust purrr scater SingleCellExperiment SummarizedExperiment tensorflow]; }; + VCFArray = derive2 { name="VCFArray"; version="1.20.0"; sha256="07z0zds9pqh7wi5zl8wsyxqrks5j182j0005c225y8n4qgwbmqk0"; depends=[BiocGenerics DelayedArray GenomicFiles GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; + VDJdive = derive2 { name="VDJdive"; version="1.6.0"; sha256="1ml175pk27msai86pnm8jyy8li7f5rkkqqfw1a9m9d850n7ry37h"; depends=[BiocParallel cowplot ggplot2 gridExtra IRanges Matrix RColorBrewer Rcpp S4Vectors SingleCellExperiment SummarizedExperiment]; }; + VERSO = derive2 { name="VERSO"; version="1.14.0"; sha256="1yixhbwa2wi3rddmyd37b9nznw4c7s36wz0mnzwqvx1n9w0zpdk3"; depends=[ape data_tree Rfast]; }; + VaSP = derive2 { name="VaSP"; version="1.16.0"; sha256="1gh0mgci2jadv3g0wc3li6d9rlaaqybdx148gkzwnjf0bmhqxz34"; depends=[ballgown cluster GenomeInfoDb GenomicAlignments GenomicRanges IRanges matrixStats Rsamtools S4Vectors]; }; + VanillaICE = derive2 { name="VanillaICE"; version="1.66.0"; sha256="0a9yzlwnyq9840w25gqsc0ijydifq6kbr7z9bzq74s7zqxzxkkqv"; depends=[Biobase BiocGenerics BSgenome_Hsapiens_UCSC_hg18 crlmm data_table foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment]; }; + VarCon = derive2 { name="VarCon"; version="1.12.0"; sha256="1ns5sxb2qrh0y6hdg6qn6s1hl4d64cvsipl6mcwqiyka9lrlmlhy"; depends=[Biostrings BSgenome GenomicRanges ggplot2 IRanges shiny shinycssloaders shinyFiles]; }; + VariantAnnotation = derive2 { name="VariantAnnotation"; version="1.50.0"; sha256="0slvlhm65hkjspzlzs3gi04a6mlfwvda314z1nmzpdi3y5111fg7"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges MatrixGenerics Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; }; + VariantExperiment = derive2 { name="VariantExperiment"; version="1.18.1"; sha256="0wxhfd92cfh9rg99jrw9rg7vfqk8lf2ylkpki2jf59hlx8zzs2z9"; depends=[Biostrings DelayedArray DelayedDataFrame GDSArray gdsfmt GenomicRanges IRanges S4Vectors SeqArray SNPRelate SummarizedExperiment]; }; + VariantFiltering = derive2 { name="VariantFiltering"; version="1.40.0"; sha256="14kxlzgy71s8h34galx93q8kalspr1m23brssbr3wha0hxb0ghgd"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores graph Gviz IRanges RBGL Rsamtools S4Vectors shiny shinyjs shinythemes shinyTree SummarizedExperiment VariantAnnotation XVector]; }; + VariantTools = derive2 { name="VariantTools"; version="1.46.0"; sha256="1idil9vkd5risx9ahkagdacnj2g2a11gzsd7wmhg5gjmr77r53ww"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges IRanges Matrix Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; + VegaMC = derive2 { name="VegaMC"; version="3.42.0"; sha256="0jswscxb78g6j978361g4cmwlzlwfkyfx6i3p9fpny464i8gsfji"; depends=[Biobase biomaRt]; }; + VennDetail = derive2 { name="VennDetail"; version="1.20.0"; sha256="0987ljk70lsjhwzk3dxslg80ng8cnjhh02zr2raphyliys0msvxz"; depends=[dplyr futile_logger ggplot2 magrittr purrr tibble UpSetR VennDiagram]; }; + ViSEAGO = derive2 { name="ViSEAGO"; version="1.18.0"; sha256="06cqx88vndmgxb7vhn7w0kwkxrsn8hy3a3mz591pj48f3z0q9w16"; depends=[AnnotationDbi AnnotationForge biomaRt data_table dendextend DiagrammeR DT dynamicTreeCut fgsea ggplot2 GO_db GOSemSim heatmaply htmlwidgets igraph plotly processx R_utils RColorBrewer scales topGO UpSetR]; }; + VisiumIO = derive2 { name="VisiumIO"; version="1.0.0"; sha256="01yvahz20fkvf2mj0zjl04w0dzs5jf4snlmry8d5a9y3smkspqyv"; depends=[BiocBaseUtils BiocGenerics BiocIO jsonlite S4Vectors SpatialExperiment SummarizedExperiment TENxIO]; }; + Voyager = derive2 { name="Voyager"; version="1.6.0"; sha256="0nvcp1wcrisiljj4w61ykz82a2l8c9vx8ixh209v2ih004wyy1y1"; depends=[BiocParallel bluster ggnewscale ggplot2 lifecycle Matrix matrixStats memuse patchwork rlang RSpectra S4Vectors scales scico sf SingleCellExperiment SpatialExperiment SpatialFeatureExperiment spdep SummarizedExperiment terra]; }; + VplotR = derive2 { name="VplotR"; version="1.14.0"; sha256="1cg5ifl2k2134k5lhxfvsr4xm31w0bdg0rzy8yb5k77gldilb0il"; depends=[cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr RColorBrewer reshape2 Rsamtools S4Vectors zoo]; }; + Wrench = derive2 { name="Wrench"; version="1.22.0"; sha256="1nwbqagpcs38c66r1arbby76if6pafa4snd6zbp18y71jj8rgvl7"; depends=[limma locfit matrixStats]; }; + XDE = derive2 { name="XDE"; version="2.50.0"; sha256="1f0aahpyrmkg5h3v6v5qw35gsjskh6dh16bgygkssa1qcafmqfv1"; depends=[Biobase BiocGenerics genefilter GeneMeta gtools mvtnorm RColorBrewer siggenes]; }; + XINA = derive2 { name="XINA"; version="1.22.0"; sha256="177yzqmkf3f2xgfrz1zpcw554yzm4njd2chhmvxi2vvijvnrgdf3"; depends=[alluvial ggplot2 gridExtra igraph mclust plyr STRINGdb]; }; + XNAString = derive2 { name="XNAString"; version="1.12.0"; sha256="0dgdaq8w7q32scdxragi40x7mkgpvvyzs2bwfb6c2yb4n2j40imi"; depends=[Biostrings BSgenome data_table formattable future_apply GenomicRanges IRanges pwalign Rcpp S4Vectors stringi stringr]; }; + XVector = derive2 { name="XVector"; version="0.44.0"; sha256="0fxv97m79w0ph4wbgp9drz6ahvnnzpv08grb11lr6a7laqq5x8s2"; depends=[BiocGenerics IRanges S4Vectors zlibbioc]; }; + Xeva = derive2 { name="Xeva"; version="1.20.0"; sha256="1n6bxj5gshr2rzcxw6dc5wcmj1ajssrqzp7a7b6rlnszk2h4vgys"; depends=[BBmisc Biobase ComplexHeatmap doParallel downloader ggplot2 nlme PharmacoGx Rmisc scales]; }; + YAPSA = derive2 { name="YAPSA"; version="1.30.0"; sha256="0908hyji07br1i1zms21a99m3mvi707xj8zbd1w64gzackghabhl"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 circlize ComplexHeatmap corrplot dendextend doParallel dplyr GenomeInfoDb GenomicRanges GetoptLong ggbeeswarm ggplot2 gridExtra gtrellis KEGGREST limSolve magrittr PMCMRplus pracma reshape2 SomaticSignatures VariantAnnotation]; }; + ZygosityPredictor = derive2 { name="ZygosityPredictor"; version="1.4.0"; sha256="03yxnrbkfzc1dqa8zin8gwi9iryw3ir2k5s80dzxclr1651zh5xd"; depends=[DelayedArray dplyr GenomicAlignments GenomicRanges igraph IRanges knitr magrittr purrr readr rlang Rsamtools stringr tibble VariantAnnotation]; }; + a4 = derive2 { name="a4"; version="1.52.0"; sha256="1wzqpvz49wkbvqij48c3l6vqfvflgic8gzvjdigb1c6mr96l6vgg"; depends=[a4Base a4Classif a4Core a4Preproc a4Reporting]; }; + a4Base = derive2 { name="a4Base"; version="1.52.0"; sha256="19vapjmyd3ly3s2gqa2xfg99gyc6n6lv3c6rpi0ch4hzb7wiinvm"; depends=[a4Core a4Preproc annaffy Biobase genefilter glmnet gplots limma mpm multtest]; }; + a4Classif = derive2 { name="a4Classif"; version="1.52.0"; sha256="15jcd66brvbjz0p3z2b43ac5k81s3vmcbkwmga0f7f5v53fp8qvw"; depends=[a4Core a4Preproc Biobase glmnet pamr ROCR varSelRF]; }; + a4Core = derive2 { name="a4Core"; version="1.52.0"; sha256="1jn2ikzijd282jl96i9hcvahkc6l2vsd79dxqiz7kwaqcp7hs5z9"; depends=[Biobase glmnet]; }; + a4Preproc = derive2 { name="a4Preproc"; version="1.52.0"; sha256="1yphs36pk2y4qajq24y443yzb2f55b08nl81ylpf65mvxlxd23w2"; depends=[Biobase BiocGenerics]; }; + a4Reporting = derive2 { name="a4Reporting"; version="1.52.0"; sha256="08zlg74qryqm238mld876v15a6c71brkz2y1gnbj0rnl1l9f9rbh"; depends=[xtable]; }; + aCGH = derive2 { name="aCGH"; version="1.82.0"; sha256="00dcx6kcqq5xcdy7rqgi51cvc20dsgrrki8aicbj1icx0m6601wa"; depends=[Biobase cluster multtest survival]; }; + abseqR = derive2 { name="abseqR"; version="1.22.0"; sha256="0aj3kh4c8zk60n6yyh2jblbrvv77071r96m0mrcslqm71dwg9402"; depends=[BiocParallel BiocStyle circlize flexdashboard ggcorrplot ggdendro ggplot2 gridExtra knitr plotly plyr png RColorBrewer reshape2 rmarkdown stringr vegan VennDiagram]; }; + acde = derive2 { name="acde"; version="1.34.0"; sha256="1h3drjxdmd837hc7l1xk6b4ha39i7bqkb8862h4h6s5rfa7dcc50"; depends=[boot]; }; + adSplit = derive2 { name="adSplit"; version="1.74.0"; sha256="13rrkb0vxkknvqhb8pgx8d13sxzy3w0wbkhhj5lrlc1kb1yqcfbh"; depends=[AnnotationDbi Biobase cluster GO_db KEGGREST multtest]; }; + adductomicsR = derive2 { name="adductomicsR"; version="1.20.0"; sha256="0800jbfm488i6ccz48k49gpxr9sf9104cxcghgy9c4lzm5d3wfbm"; depends=[adductData ade4 AnnotationHub bootstrap data_table doSNOW dplyr DT ExperimentHub fastcluster foreach fpc mzR OrgMassSpecR pastecs pracma RcppEigen reshape2 rvest smoother zoo]; }; + adverSCarial = derive2 { name="adverSCarial"; version="1.2.0"; sha256="1c8anqpxdrkc33pfm1phqjsb8kjdrfqxh93x8n2mpsywqg8q27pb"; depends=[DelayedArray gtools S4Vectors]; }; + affxparser = derive2 { name="affxparser"; version="1.76.0"; sha256="0qqc2sq331g2ml390nhjkrnldp6bi7r6xyz7rw77hnr3qpcrhqk2"; depends=[]; }; + affy = derive2 { name="affy"; version="1.82.0"; sha256="19z22c1yd3rkwk7dp8q8xv16n0qv92iz00vzid3pniy7zr80cxxy"; depends=[affyio Biobase BiocGenerics BiocManager preprocessCore zlibbioc]; }; + affyContam = derive2 { name="affyContam"; version="1.62.0"; sha256="0r4pqda9pv60b867c6yi328687kyxjglk5jmcal6xnlr75nf4w0y"; depends=[affy affydata Biobase]; }; + affyILM = derive2 { name="affyILM"; version="1.56.0"; sha256="185kdrnvcp2jw0k71q0v4yk7583gwgi31h0n281x25hirixf6rm3"; depends=[affxparser affy Biobase gcrma]; }; + affyPLM = derive2 { name="affyPLM"; version="1.80.0"; sha256="1khknl7k45amyw58mcgw7kl511llyddw31qzwqc2l5c4j3bwnpz5"; depends=[affy Biobase BiocGenerics gcrma preprocessCore zlibbioc]; }; + affycomp = derive2 { name="affycomp"; version="1.80.0"; sha256="02n2v1iwkhmilv1bjfza2yrqj7rsr8v46bghajcb8wdyyaj759ib"; depends=[Biobase]; }; + affycoretools = derive2 { name="affycoretools"; version="1.76.0"; sha256="0w138n3f68ndr0innk981vf8p5wb729m31p0d3f9qp08hmv58jfw"; depends=[affy AnnotationDbi Biobase BiocGenerics DBI edgeR gcrma ggplot2 Glimma GOstats gplots hwriter lattice limma oligoClasses ReportingTools RSQLite S4Vectors xtable]; }; + affyio = derive2 { name="affyio"; version="1.74.0"; sha256="156sijj9zy01p038m7yw58h1bw1ii0kd5q9kv3krh6bs67c3dv8h"; depends=[zlibbioc]; }; + affylmGUI = derive2 { name="affylmGUI"; version="1.78.0"; sha256="1qilkr3dcl6driah24kgz7lrzamq08qp2z03inm2m4r5yx8811wc"; depends=[affy affyio affyPLM AnnotationDbi BiocGenerics BiocManager gcrma limma R2HTML tkrplot xtable]; }; + aggregateBioVar = derive2 { name="aggregateBioVar"; version="1.14.0"; sha256="0qag99chj7n7l0wbb8ar0f58xs6883rgddkgj7jnrrlj3acrm12v"; depends=[Matrix rlang S4Vectors SingleCellExperiment SummarizedExperiment tibble]; }; + agilp = derive2 { name="agilp"; version="3.36.0"; sha256="1mfi4xvx6ywkr7b7ma9ip6q2nsjvkri8qx48qyr98yyik7gg28d5"; depends=[]; }; + airpart = derive2 { name="airpart"; version="1.12.0"; sha256="05l5rgjfjln3kip72wj4ll4cgak9yz60xg6dgxxj690pxs1pw7bg"; depends=[apeglm clue ComplexHeatmap dplyr dynamicTreeCut emdbook forestplot ggplot2 lpSolve matrixStats mclust pbapply plyr RColorBrewer rlang S4Vectors scater SingleCellExperiment smurf SummarizedExperiment]; }; + alabaster = derive2 { name="alabaster"; version="1.4.0"; sha256="0c8ryjn4a4py5439vlk23rskf96xc77blj51c6g6m9j812fsby3l"; depends=[alabaster_base alabaster_bumpy alabaster_mae alabaster_matrix alabaster_ranges alabaster_sce alabaster_se alabaster_spatial alabaster_string alabaster_vcf]; }; + alabaster_base = derive2 { name="alabaster.base"; version="1.4.1"; sha256="1id8cs3m1kpcfmk9aa957vy7svf7aam4kzyzic36rxcqmarr130h"; depends=[alabaster_schemas jsonlite jsonvalidate Rcpp rhdf5 Rhdf5lib S4Vectors]; }; + alabaster_bumpy = derive2 { name="alabaster.bumpy"; version="1.4.0"; sha256="16q433asljnnx04b7q2a4ajhbsrzrqa35m6mcx9apg6q24iw869x"; depends=[alabaster_base BiocGenerics BumpyMatrix IRanges Matrix rhdf5 S4Vectors]; }; + alabaster_files = derive2 { name="alabaster.files"; version="1.2.0"; sha256="0mib4wix9ddgvhgff05gq2ijy6kyh884nv0j40rxzfkxqhp77gim"; depends=[alabaster_base BiocGenerics Rsamtools S4Vectors]; }; + alabaster_mae = derive2 { name="alabaster.mae"; version="1.4.0"; sha256="07w4q6dm4asrcdqynhdlxyaaf29s3ca8ij8iblwjnpgp9p5pbj6v"; depends=[alabaster_base alabaster_se jsonlite MultiAssayExperiment rhdf5 S4Vectors]; }; + alabaster_matrix = derive2 { name="alabaster.matrix"; version="1.4.0"; sha256="00k0lylyhz6glqhd463bbmmldqhv5i7an9nw95md7x2m43c9gzyk"; depends=[alabaster_base BiocGenerics DelayedArray HDF5Array Matrix Rcpp rhdf5 S4Arrays S4Vectors SparseArray]; }; + alabaster_ranges = derive2 { name="alabaster.ranges"; version="1.4.1"; sha256="0d3ygcn2sxkrdyjlwl98l50b0vqxrsp24vb029z5g8kjbvqhh5kr"; depends=[alabaster_base BiocGenerics GenomeInfoDb GenomicRanges IRanges rhdf5 S4Vectors]; }; + alabaster_sce = derive2 { name="alabaster.sce"; version="1.4.0"; sha256="1i9nmivsfrd7fbb8njmwihfx4xpj4p3h5bnlj9fvk5308bbj3qcg"; depends=[alabaster_base alabaster_se jsonlite SingleCellExperiment]; }; + alabaster_schemas = derive2 { name="alabaster.schemas"; version="1.4.0"; sha256="1cizlslxw0nhrfjsz3x90waa9w4n2v72a0cycbzvxqbbvkh3cp1l"; depends=[]; }; + alabaster_se = derive2 { name="alabaster.se"; version="1.4.1"; sha256="134r4pwaa4nsmdgqxs16w3adn482zl70lgyd4s96pmx7hqm9i1vx"; depends=[alabaster_base alabaster_matrix alabaster_ranges BiocGenerics GenomicRanges IRanges jsonlite S4Vectors SummarizedExperiment]; }; + alabaster_spatial = derive2 { name="alabaster.spatial"; version="1.4.0"; sha256="11mgs6smyiv4r5cajzqpw0k7q0jsm6xch1b5c9w7scl7d9bq981k"; depends=[alabaster_base alabaster_sce rhdf5 S4Vectors SpatialExperiment]; }; + alabaster_string = derive2 { name="alabaster.string"; version="1.4.0"; sha256="0p55dpfwjjikmgyq0vk9hmd6k0j3d2x4jjxd7wnabhga3vr4jg7q"; depends=[alabaster_base Biostrings S4Vectors]; }; + alabaster_vcf = derive2 { name="alabaster.vcf"; version="1.4.0"; sha256="1ry5gim6kkis8wy0v1afv44ay6nw8m9nd6jl89980z499pblf9j4"; depends=[alabaster_base alabaster_se alabaster_string Rsamtools S4Vectors VariantAnnotation]; }; + alevinQC = derive2 { name="alevinQC"; version="1.20.0"; sha256="1pq42lvgggysg28ngxipqb1l7jfj498nxpg40h02siz6nb6inbdw"; depends=[cowplot dplyr DT GGally ggplot2 Rcpp rjson rlang rmarkdown shiny shinydashboard tximport]; }; + altcdfenvs = derive2 { name="altcdfenvs"; version="2.66.0"; sha256="08k3j3dc93vg5c9ccw7mc4fri9xbdj7rdjyj0h6ig0s5866fqvlb"; depends=[affy Biobase BiocGenerics Biostrings hypergraph makecdfenv S4Vectors]; }; + amplican = derive2 { name="amplican"; version="1.26.0"; sha256="1nbyivd5020kqkmk5ngpaixhdxgmqpifaxnfgq6yc2njqizgbhxy"; depends=[BiocGenerics BiocParallel Biostrings cluster data_table dplyr GenomeInfoDb GenomicRanges ggplot2 ggthemes gridExtra gtable IRanges knitr Matrix matrixStats pwalign Rcpp rmarkdown S4Vectors ShortRead stringr waffle]; }; + animalcules = derive2 { name="animalcules"; version="1.20.0"; sha256="1g073n8nmckd388hy9gfiddil53wv692k69ywjc85jyp5jy2n265"; depends=[ape assertthat caret covr DESeq2 dplyr DT forcats ggforce ggplot2 GUniFrac lattice limma magrittr Matrix MultiAssayExperiment plotly rentrez reshape2 ROCit S4Vectors scales shiny shinyjs SummarizedExperiment tibble tidyr tsne umap vegan XML]; }; + annaffy = derive2 { name="annaffy"; version="1.76.0"; sha256="1298mn8yz4i0qqw1i8pd4ym5f65dmyb8wcmpyahzz11na4diybmj"; depends=[AnnotationDbi Biobase BiocManager DBI GO_db]; }; + annmap = derive2 { name="annmap"; version="1.46.0"; sha256="1xijcm0c19wj2yknrlsz2ifm097z32rc58k608482686srj0bg2i"; depends=[Biobase BiocGenerics DBI digest genefilter GenomicRanges IRanges lattice RMySQL Rsamtools]; }; + annotate = derive2 { name="annotate"; version="1.82.0"; sha256="1v4sq22lwrhl50whag0jil788wwvi4rpdaij03iwak93q998ls0f"; depends=[AnnotationDbi Biobase BiocGenerics DBI httr XML xtable]; }; + annotationTools = derive2 { name="annotationTools"; version="1.78.0"; sha256="1hwawrp0pbrm9xf7fn65nj0q4s49qlnmxfjlmrv5fykyn3i1lhpq"; depends=[Biobase]; }; + annotatr = derive2 { name="annotatr"; version="1.30.0"; sha256="11cc3nknbckm0v5r7dzgqzw0137w4c08ab10s9svb1y02z45a0qz"; depends=[AnnotationDbi AnnotationHub dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges readr regioneR reshape2 rtracklayer S4Vectors]; }; + anota = derive2 { name="anota"; version="1.52.0"; sha256="1pg9p6982901k08iqpk0cdb9hii3k7bci9gq6an711r8a4iy3lmc"; depends=[multtest qvalue]; }; + anota2seq = derive2 { name="anota2seq"; version="1.26.0"; sha256="140k37wswl4w2136pz9y0z82sphzxmgzgk3cr400kkm39wjn7vxm"; depends=[DESeq2 edgeR limma multtest qvalue RColorBrewer SummarizedExperiment]; }; + antiProfiles = derive2 { name="antiProfiles"; version="1.44.0"; sha256="0p2fhxzgn877mic2yv1sgcidgm74z8hxa3hdaawgvhhvi2j6v8wa"; depends=[locfit matrixStats]; }; + apComplex = derive2 { name="apComplex"; version="2.70.0"; sha256="1fsqrds5r8bhdf7fbnw6rf3vqapl6xk1a5l6jjb98raxmjsrfyqs"; depends=[graph org_Sc_sgd_db RBGL Rgraphviz]; }; + apeglm = derive2 { name="apeglm"; version="1.26.1"; sha256="039my876v0k2mr50w90w3phj4cq55awf5ks07kr2fnm7w211gxvs"; depends=[emdbook GenomicRanges Rcpp RcppEigen RcppNumerical SummarizedExperiment]; }; + appreci8R = derive2 { name="appreci8R"; version="1.22.0"; sha256="1nwb7475lhclyd0jdwm0sp1wh2rgs2h16k4hin6z44axix5v7jhr"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 COSMIC_67 DT GenomicFeatures GenomicRanges GenomicScores Homo_sapiens IRanges MafDb_1Kgenomes_phase3_hs37d5 MafDb_ExAC_r1_0_hs37d5 MafDb_gnomADex_r2_1_hs37d5 openxlsx PolyPhen_Hsapiens_dbSNP131 rentrez Rsamtools S4Vectors seqinr shiny shinyjs SIFT_Hsapiens_dbSNP137 SNPlocs_Hsapiens_dbSNP144_GRCh37 stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation XtraSNPlocs_Hsapiens_dbSNP144_GRCh37]; }; + aroma_light = derive2 { name="aroma.light"; version="3.34.0"; sha256="1v24b43knsjpw44zkrzv8pvxjiw12rcz9wqp4ahd88dg23j7pvwz"; depends=[matrixStats R_methodsS3 R_oo R_utils]; }; + arrayMvout = derive2 { name="arrayMvout"; version="1.62.0"; sha256="11v3s972nyahdswqdcab0fj9jb73vd5dnd5kfb09572y4z0hn5xw"; depends=[affy affyContam Biobase lumi mdqc parody]; }; + arrayQuality = derive2 { name="arrayQuality"; version="1.82.0"; sha256="0wmczy2wdxki9pam9q6ly5clvqbl018v1ar4zkdm8algjddyc2cp"; depends=[gridBase hexbin limma marray RColorBrewer]; }; + arrayQualityMetrics = derive2 { name="arrayQualityMetrics"; version="3.60.0"; sha256="04y1vbpxqhqn1vsyqmscikaxn6wshsk4krcqzf2baf9x4azbdjk1"; depends=[affy affyPLM beadarray Biobase genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG svglite vsn XML]; }; + artMS = derive2 { name="artMS"; version="1.22.0"; sha256="11a6igby8kz2r5wawrsisz22v4hak9004zr8y87v3pp92rnvb3ma"; depends=[AnnotationDbi bit64 circlize cluster corrplot data_table dplyr getopt ggdendro ggplot2 ggrepel gplots limma MSstats openxlsx org_Hs_eg_db pheatmap plotly plyr RColorBrewer scales seqinr stringr tidyr UpSetR VennDiagram yaml]; }; + atSNP = derive2 { name="atSNP"; version="1.20.0"; sha256="08pcbys8iy8wzqzzvlnwc3qw7m7cswkqa3x2x2x8m4ni1s4isd6z"; depends=[BiocFileCache BiocParallel BSgenome data_table ggplot2 lifecycle motifStack rappdirs Rcpp testthat]; }; + atena = derive2 { name="atena"; version="1.10.0"; sha256="1y2v8mi9awgfbcawpcir01qglxn0bdgj6v2dsdqp6if25cizl3sr"; depends=[AnnotationHub BiocGenerics BiocParallel cli GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Matrix MatrixGenerics matrixStats Rsamtools S4Vectors sparseMatrixStats SQUAREM SummarizedExperiment]; }; + attract = derive2 { name="attract"; version="1.56.0"; sha256="08l634sk6y06y2m78vsd0ld4w3h6qvx4hk6wkqflkl9jjyqpx8jy"; depends=[AnnotationDbi Biobase cluster GOstats KEGGREST limma org_Hs_eg_db reactome_db]; }; + autonomics = derive2 { name="autonomics"; version="1.12.1"; sha256="1fzzj0v6v4jvr3wh5bnjr6h2ny8zfm9pdlbhq5syaa2plvsbblpy"; depends=[abind BiocFileCache BiocGenerics bit64 codingMatrices colorspace data_table dplyr edgeR ggforce ggplot2 ggrepel gridExtra limma magrittr matrixStats MultiAssayExperiment R_utils RColorBrewer readxl rlang S4Vectors scales stringi SummarizedExperiment tidyr tidyselect vsn]; }; + awst = derive2 { name="awst"; version="1.12.0"; sha256="1iaakdjxrz4szl4lnjcszy47q5dsh2d7i3wrr3wwdhw6wjcd62hj"; depends=[SummarizedExperiment]; }; + bacon = derive2 { name="bacon"; version="1.32.0"; sha256="09lvjb0fa70kcl7mkp4agxv6jcm2ncmnrffav6zmz038imhmvdgm"; depends=[BiocParallel ellipse ggplot2]; }; + ballgown = derive2 { name="ballgown"; version="2.36.0"; sha256="0x3avbqf0ipmb70szf2chhbdg14ba2hwhyyz0wd66c1qwfk6aj9v"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; }; + bambu = derive2 { name="bambu"; version="3.6.0"; sha256="1pn6a74nvcpn0xzfb8167hbc6pdma0ybhh7kjpqdl4hgjp446w5w"; depends=[BiocGenerics BiocParallel BSgenome data_table dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment tidyr xgboost]; }; + bamsignals = derive2 { name="bamsignals"; version="1.36.0"; sha256="1jq993m6b0cv3ibgjrbzyka7svb653hvi6bvqhf8ir3lgjgs23dp"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; }; + bandle = derive2 { name="bandle"; version="1.8.0"; sha256="0lkmwr207s26kxmhfcsay4mb3fg70wjcrhhjj82g5yjrycmjidm9"; depends=[BH Biobase BiocParallel BiocStyle circlize dplyr ggalluvial ggplot2 ggrepel knitr lbfgs MSnbase plyr pRoloc pRolocdata Rcpp RcppArmadillo rlang robustbase S4Vectors tidyr]; }; + banocc = derive2 { name="banocc"; version="1.28.0"; sha256="12fysw9m3rrmyfq1j97rdklaln6vgjdmz7hj85vrh10haz9j23s2"; depends=[coda mvtnorm rstan stringr]; }; + barcodetrackR = derive2 { name="barcodetrackR"; version="1.12.0"; sha256="0x0fpa44lyww2l1rdc35pdlgczz4y1vxjbn0s1frlpaacmqcxrly"; depends=[circlize cowplot dplyr ggdendro ggplot2 ggridges magrittr plyr proxy RColorBrewer rlang S4Vectors scales shiny SummarizedExperiment tibble tidyr vegan viridis]; }; + basecallQC = derive2 { name="basecallQC"; version="1.28.0"; sha256="033agi9xcyr2mpryyqjzd1diinv3cnam6f13qw4xfg0fncn0rm83"; depends=[data_table dplyr DT ggplot2 knitr lazyeval magrittr prettydoc raster rmarkdown ShortRead stringr tidyr XML yaml]; }; + basilisk = derive2 { name="basilisk"; version="1.16.0"; sha256="1jhaar524z4ly8d4c7nyjn094m4sgz4vhh8qljd2yvs30xxs0jin"; depends=[basilisk_utils dir_expiry reticulate]; }; + basilisk_utils = derive2 { name="basilisk.utils"; version="1.16.0"; sha256="04amc13h4ghy1zr9wkdl42wgicxz5s2iwsspxvvi18acm06nzgfh"; depends=[dir_expiry]; }; + batchelor = derive2 { name="batchelor"; version="1.20.0"; sha256="1h70rm0h711ndj9kz3q10yd9f6npjiwvk9wmkg6w3pdgjni1nrl0"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats igraph Matrix Rcpp ResidualMatrix S4Vectors ScaledMatrix scuttle SingleCellExperiment SummarizedExperiment]; }; + bayNorm = derive2 { name="bayNorm"; version="1.22.0"; sha256="0b05446vcqxr7smxyhmvl6rxlckzzgqhf5v1059657kihhscqr7s"; depends=[BB BiocParallel doSNOW fitdistrplus foreach iterators locfit MASS Matrix Rcpp RcppArmadillo RcppProgress SingleCellExperiment SummarizedExperiment]; }; + baySeq = derive2 { name="baySeq"; version="2.38.0"; sha256="0nlkynzijxl6f8983vdpmcssvrpjf6s42zx3lxfwxwlhrvz1yg9l"; depends=[abind edgeR GenomicRanges]; }; + bcSeq = derive2 { name="bcSeq"; version="1.26.0"; sha256="0bbr46clvr1nlqk7lkdyvz5y0yfvw1rxsm29gsanfqbxa3akvxn6"; depends=[Biostrings Matrix Rcpp]; }; + beachmat = derive2 { name="beachmat"; version="2.20.0"; sha256="0gvxz9w2mi8scqyyhhnrasscs7hwvxxlqvh7j9m6akpi8qq91v6y"; depends=[BiocGenerics DelayedArray Matrix Rcpp SparseArray]; }; + beachmat_hdf5 = derive2 { name="beachmat.hdf5"; version="1.2.0"; sha256="1qjib3vw0b0nvfx3j5nfgwikcmc5jq49ddahv05arhdabd40vmg4"; depends=[beachmat DelayedArray HDF5Array Rcpp Rhdf5lib]; }; + beadarray = derive2 { name="beadarray"; version="2.54.0"; sha256="0yda6maj985k374bh6zkrs8qffw1jrz9gc3mja07ibyn4pvzkclq"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 hexbin illuminaio IRanges limma reshape2]; }; + beer = derive2 { name="beer"; version="1.8.0"; sha256="1b7pw7nwpryrdji14y9cbv03f8g8r8lzf1fd72ff2b69csp993ww"; depends=[BiocParallel cli edgeR PhIPData progressr rjags SummarizedExperiment]; }; + benchdamic = derive2 { name="benchdamic"; version="1.10.0"; sha256="040lkmwz51za2biqlf3z3ai5j03rmw15kwz3i3v10rzq0322fsk3"; depends=[ALDEx2 ANCOMBC BiocParallel corncob cowplot dearseq DESeq2 edgeR ggdendro ggplot2 ggridges GUniFrac limma lme4 Maaslin2 MAST metagenomeSeq MGLM MicrobiomeStat mixOmics NOISeq phyloseq plyr RColorBrewer reshape2 Seurat SummarizedExperiment tidytext TreeSummarizedExperiment zinbwave]; }; + betaHMM = derive2 { name="betaHMM"; version="1.0.0"; sha256="1dwdjfvca22gaz0qjngf3fc32bpybz1dvvbwd91wgznzk7wjk6yq"; depends=[cowplot doParallel dplyr foreach GenomicRanges ggplot2 pROC S4Vectors scales stringr SummarizedExperiment tidyr tidyselect]; }; + bettr = derive2 { name="bettr"; version="1.0.0"; sha256="19z7df9kmk4zfbljlq5ginl82zml37iyjnjm0fqinm2b9i1ww432"; depends=[bslib circlize ComplexHeatmap cowplot dplyr DT ggplot2 Hmisc rlang S4Vectors scales shiny shinyjqui sortable SummarizedExperiment tibble tidyr]; }; + bgx = derive2 { name="bgx"; version="1.70.0"; sha256="0sglk8q12fvqk6m699v3lajwr1zb8wnrldfv2n8y7jjy2fqcvs19"; depends=[affy Biobase gcrma Rcpp]; }; + bigmelon = derive2 { name="bigmelon"; version="1.30.0"; sha256="0fa1dwbk6hdiwg6dmbks7hy4cg3ydyd2sv94cyl0003awhf00nn9"; depends=[Biobase BiocGenerics gdsfmt GEOquery illuminaio methylumi minfi wateRmelon]; }; + bioCancer = derive2 { name="bioCancer"; version="1.32.0"; sha256="0mwmdavakmrfa7d7h0h14lkk6k7ps3g8hvbja1hq01nkdfy7imvp"; depends=[AlgDesign AnnotationDbi Biobase cBioPortalData clusterProfiler DiagrammeR DOSE dplyr DT geNetClassifier GO_db htmlwidgets org_Bt_eg_db org_Hs_eg_db plyr r_import R_methodsS3 R_oo radiant_data reactome_db ReactomePA shiny shinythemes tibble tidyr visNetwork XML]; }; + bioDist = derive2 { name="bioDist"; version="1.76.0"; sha256="1yxr5df1y8v5c9imh27j86s7g9wjvi51j2wyn8jgma875mad41hq"; depends=[Biobase KernSmooth]; }; + bioassayR = derive2 { name="bioassayR"; version="1.42.0"; sha256="0rckhgg73cgz0ppqaywc7nvbnp1is6cyjfa7dn2l32xxrcl57pq6"; depends=[BiocGenerics ChemmineR DBI Matrix rjson RSQLite XML]; }; + biobroom = derive2 { name="biobroom"; version="1.36.0"; sha256="0flj14d8aamr1fzcpd0k7jq5rs0j5dsijpahg066qrnapn5990d0"; depends=[Biobase broom dplyr tidyr]; }; + biobtreeR = derive2 { name="biobtreeR"; version="1.16.0"; sha256="0660rc8b4vkic4dbf64wkky68f0hk92ip52x7gihvv203cj9fin4"; depends=[httpuv httr jsonlite stringi]; }; + biocGraph = derive2 { name="biocGraph"; version="1.66.0"; sha256="0ji6pa8wfj57drpnp03vgas1pird84g15nnp6469jmx773izhfq0"; depends=[BiocGenerics geneplotter graph Rgraphviz]; }; + biocViews = derive2 { name="biocViews"; version="1.72.0"; sha256="10j9s50ppfx8r752wkabls0n4gxp17z7dnaf352f3dcdbfa8ijh5"; depends=[Biobase BiocManager graph RBGL RCurl RUnit XML]; }; + biocroxytest = derive2 { name="biocroxytest"; version="1.0.0"; sha256="0na0qbrqjfyq6wlxfnp6h6ljdmcxs5nq4spbifk6v74cxm7aqgni"; depends=[cli glue roxygen2 stringr]; }; + biocthis = derive2 { name="biocthis"; version="1.14.0"; sha256="1f09vw5qjxyirz5xbvnnjlwxg7z0i0y8yry49d1gyx0spyhzl7sp"; depends=[BiocManager fs glue rlang styler usethis]; }; + biodb = derive2 { name="biodb"; version="1.12.0"; sha256="0zkd6505q0myc5l9d69i1fvfhcrjqxkv208p84zr5p7xi8jmg3dw"; depends=[BiocFileCache chk git2r jsonlite lgr lifecycle openssl plyr progress R6 rappdirs Rcpp RCurl RSQLite stringr testthat withr XML yaml]; }; + biodbChebi = derive2 { name="biodbChebi"; version="1.10.0"; sha256="1w3mnryv1x5a68llnpqfdsrkzwrwq2b7n6hm458gfkw6ql070109"; depends=[biodb R6]; }; + biodbExpasy = derive2 { name="biodbExpasy"; version="1.8.0"; sha256="1amzff4ndadialm5rhzy267c24h5fmh9w9w109zsbw8sixl0s0sd"; depends=[biodb chk R6 stringr]; }; + biodbHmdb = derive2 { name="biodbHmdb"; version="1.10.0"; sha256="0xf63zj1bpkaymv3psvrkibjbirqb7bych95p4l5crsg8af730ra"; depends=[biodb R6 Rcpp testthat zip]; }; + biodbKegg = derive2 { name="biodbKegg"; version="1.10.0"; sha256="065a0c62xbbqc73gbcqcwfv1jyyy025dppjq93l0ic4qshh9kg79"; depends=[biodb chk lifecycle R6]; }; + biodbLipidmaps = derive2 { name="biodbLipidmaps"; version="1.10.0"; sha256="1p181kwy9q8jj4m7flg71pqn7h6865hbwha4n6j2qki830vym6rv"; depends=[biodb lifecycle R6]; }; + biodbNcbi = derive2 { name="biodbNcbi"; version="1.8.0"; sha256="01v0lym2kldcjypqsx9b8k8hvxdmnr1rsczdzl87nsax22q6g9hc"; depends=[biodb chk R6 XML]; }; + biodbNci = derive2 { name="biodbNci"; version="1.8.0"; sha256="11xzf804v9dp25zw7kxwws2q386h22ybibrcplm3wrkrxj223kks"; depends=[biodb chk R6 Rcpp testthat]; }; + biodbUniprot = derive2 { name="biodbUniprot"; version="1.10.0"; sha256="1jwv6y9kaq2d7iswgz602yhwg35c9d9yqa9c87d454n0wrl6h6yg"; depends=[biodb R6]; }; + biomaRt = derive2 { name="biomaRt"; version="2.60.0"; sha256="0vsjldksykgs6z7afn8kbqzl489irvvzrzq75kqkhavyhxnavqkq"; depends=[AnnotationDbi BiocFileCache digest httr2 progress rappdirs stringr xml2]; }; + biomformat = derive2 { name="biomformat"; version="1.32.0"; sha256="0jys0nmp833ax96vfdh1adikpyapr5gkmldx5kvv5bqiqc8aipzb"; depends=[jsonlite Matrix plyr rhdf5]; }; + biomvRCNS = derive2 { name="biomvRCNS"; version="1.44.0"; sha256="1wk0qagx9s2lxykc1fp7l35kl6q17lqy6x4fl2c57v3wa11f47mi"; depends=[GenomicRanges Gviz IRanges mvtnorm]; }; + biosigner = derive2 { name="biosigner"; version="1.32.0"; sha256="1c56s8lr5cdx27v0rdi4l4h680x6ga9wazf4dj1xkqyliqz65ps5"; depends=[Biobase e1071 MultiAssayExperiment MultiDataSet randomForest ropls SummarizedExperiment]; }; + biotmle = derive2 { name="biotmle"; version="1.28.0"; sha256="06kixhzkrzxyic44kdmqrv19v2c4a7sri8cbhbvww8km4n5l39sf"; depends=[assertthat BiocGenerics BiocParallel dplyr drtmle ggplot2 ggsci limma S4Vectors SummarizedExperiment superheat tibble]; }; + biovizBase = derive2 { name="biovizBase"; version="1.52.0"; sha256="1jbcnjjwdjy7zfy0ybgfy1y5ym7rygzkailr5bm4hnh9bn2837p7"; depends=[AnnotationDbi AnnotationFilter BiocGenerics Biostrings dichromat ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Hmisc IRanges RColorBrewer rlang Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; + biscuiteer = derive2 { name="biscuiteer"; version="1.18.0"; sha256="15bisrcgyiv9ndfvgm0p4igyr4jwsf68ccis1nf1hi9x291k7m6y"; depends=[Biobase BiocGenerics BiocParallel biscuiteerData bsseq data_table DelayedMatrixStats dmrseq GenomeInfoDb GenomicRanges gtools HDF5Array Homo_sapiens impute IRanges Matrix matrixStats Mus_musculus QDNAseq qualV R_utils readr Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; + blacksheepr = derive2 { name="blacksheepr"; version="1.18.0"; sha256="1avqq6m30x2bg3h32laxcpbd4f5s10548k3cj4xb1d25svnn8pax"; depends=[circlize ComplexHeatmap pasilla RColorBrewer SummarizedExperiment viridis]; }; + blima = derive2 { name="blima"; version="1.38.0"; sha256="1a5rzwgsvkwzl97p6pvbhi8dsvd7vbny0bajjp273czrm09yk8rc"; depends=[beadarray Biobase BiocGenerics Rcpp]; }; + bluster = derive2 { name="bluster"; version="1.14.0"; sha256="1bj7wx2dnwbrv2gxcmqmq815vawfiqj2xy3624fjli11r8c1hywa"; depends=[BiocNeighbors BiocParallel cluster igraph Matrix Rcpp S4Vectors]; }; + bnbc = derive2 { name="bnbc"; version="1.26.0"; sha256="09vy9igcnw927j0zb4znrbcknkaic69ly6w4syb1cwysr0rvmrdz"; depends=[BiocGenerics data_table EBImage GenomeInfoDb GenomicRanges HiCBricks IRanges matrixStats preprocessCore Rcpp rhdf5 S4Vectors SummarizedExperiment sva]; }; + bnem = derive2 { name="bnem"; version="1.12.0"; sha256="15jzsba3qdkj5y7gqxklgv69r5bq2li4irvjkhmbjnjlv0pv4wdg"; depends=[affy binom Biobase CellNOptR cluster epiNEM flexclust graph limma matrixStats mnem RColorBrewer Rgraphviz rmarkdown snowfall sva vsn]; }; + borealis = derive2 { name="borealis"; version="1.8.0"; sha256="1m7yq1sx4ivbcrjm1w3l5qsyhlv0jdkb5l91kxd5hvisakfdrfz9"; depends=[Biobase bsseq cowplot doParallel dplyr DSS foreach gamlss gamlss_dist GenomicRanges ggplot2 plyr purrr R_utils rlang snow]; }; + branchpointer = derive2 { name="branchpointer"; version="1.30.0"; sha256="034sa73ll152s24cgrz47br7kyswr7jn6c735mp6dvbhppmlj2xm"; depends=[biomaRt Biostrings BSgenome_Hsapiens_UCSC_hg38 caret cowplot data_table gbm GenomeInfoDb GenomicRanges ggplot2 IRanges kernlab plyr rtracklayer S4Vectors stringr]; }; + breakpointR = derive2 { name="breakpointR"; version="1.22.0"; sha256="0imbsqrslclvfyvc00sv6ngvl5hqlr6ian07v521m63ffpx6ll78"; depends=[BiocGenerics breakpointRdata cowplot doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges Rsamtools S4Vectors]; }; + brendaDb = derive2 { name="brendaDb"; version="1.18.0"; sha256="1rhmd3v20y2cw70zpzykpz7bidf000dq904c2qlf58nqwclxj88l"; depends=[BiocFileCache BiocParallel crayon dplyr magrittr purrr rappdirs Rcpp rlang stringr tibble tidyr]; }; + bsseq = derive2 { name="bsseq"; version="1.40.0"; sha256="1b7a9ryl4lz6qy2pni3k9bk6hdf147s3m7fx0icg6fkgi0ymssyx"; depends=[beachmat Biobase BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats GenomeInfoDb GenomicRanges gtools HDF5Array IRanges limma locfit permute R_utils Rcpp rhdf5 S4Vectors scales SummarizedExperiment]; }; + bugsigdbr = derive2 { name="bugsigdbr"; version="1.10.0"; sha256="0fg7rk14jgpr07wm93i40wklxphag9yw56kr59rw1cfdfhqnmsv7"; depends=[BiocFileCache vroom]; }; + bumphunter = derive2 { name="bumphunter"; version="1.46.0"; sha256="08b5d0grmpk5pryffdh6gdafhp1brana353q2kmwhz7x55aq3w68"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; }; + cBioPortalData = derive2 { name="cBioPortalData"; version="2.16.0"; sha256="0s1qy46z78hlk37lnvqh1zi36y90299f6ym82k2d60jbw8aw2jxa"; depends=[AnVIL BiocFileCache digest dplyr GenomeInfoDb GenomicRanges httr IRanges MultiAssayExperiment RaggedExperiment readr RTCGAToolbox S4Vectors SummarizedExperiment TCGAutils tibble tidyr]; }; + cTRAP = derive2 { name="cTRAP"; version="1.22.0"; sha256="119hnbv0p3mgr3zh9dff9pwllnsk790hm0ahypzpr08gwg2ml9lb"; depends=[AnnotationDbi AnnotationHub binr cowplot data_table dplyr DT fastmatch fgsea ggplot2 ggrepel highcharter htmltools httr limma pbapply purrr qs R_utils readxl reshape2 rhdf5 rlang scales shiny shinycssloaders tibble]; }; + cageminer = derive2 { name="cageminer"; version="1.10.0"; sha256="0ijagv7yzlil4mdibip5css7asdrnzfr2lq3r9zq8fkf4fwr2mpx"; depends=[BioNERO GenomeInfoDb GenomicRanges ggbio ggplot2 ggtext IRanges reshape2 rlang]; }; + calm = derive2 { name="calm"; version="1.18.0"; sha256="0sbl44747xc7m4jpf318gb7cb1hx6r2mw4bk81da7d5d8kpi9n9s"; depends=[mgcv]; }; + canceR = derive2 { name="canceR"; version="1.38.0"; sha256="1hmc4sw3w5wsix7ixr85lplpp6hxrd5xpf5apvr77hligw61dhvs"; depends=[Biobase cBioPortalData circlize dplyr Formula geNetClassifier GSEABase phenoTest plyr R_methodsS3 R_oo rpart RUnit survival tidyr tkrplot]; }; + cancerclass = derive2 { name="cancerclass"; version="1.48.0"; sha256="00lin7likd0ffqk2nqx5ql8v3zpr82xprv36c1gzw0wkrgp3rgmw"; depends=[binom Biobase]; }; + cardelino = derive2 { name="cardelino"; version="1.6.0"; sha256="16mczwh41gf7ikbzxvggai7a8d64fn2k7q9w1yxf0sn6cwg3l0di"; depends=[combinat GenomeInfoDb GenomicRanges ggplot2 ggtree Matrix matrixStats pheatmap S4Vectors snpStats VariantAnnotation vcfR]; }; + casper = derive2 { name="casper"; version="2.38.0"; sha256="0bwjnncm93j99m38mv99i1pw42cjmib4sqzw5nhb6p9mj39mm3zb"; depends=[Biobase BiocGenerics coda EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; }; + categoryCompare = derive2 { name="categoryCompare"; version="1.48.0"; sha256="0mfmv3wna7dddf4i3ckh2iin8vq05g4fjb1n2pvw0s9lz3da3rjf"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCy3]; }; + cbaf = derive2 { name="cbaf"; version="1.26.3"; sha256="1lpz3n288v32nbb0g4jb1mxmx79amm29m40w3sfkgllnjjdwsyd3"; depends=[BiocFileCache cBioPortalData genefilter gplots openxlsx RColorBrewer]; }; + cbpManager = derive2 { name="cbpManager"; version="1.12.0"; sha256="1idlxmnbyvc1nzshnvf3p4y9xdjb2kdcm05kpf3ihh993igddk14"; depends=[basilisk dplyr DT htmltools jsonlite magrittr markdown plyr rapportools reticulate rintrojs rlang shiny shinyBS shinycssloaders shinydashboard vroom]; }; + ccImpute = derive2 { name="ccImpute"; version="1.6.0"; sha256="0pjdlh77wpv54m2kc26kyzmpqikgz666dkw5h6af7q7lmgp0xc19"; depends=[BiocParallel matrixStats Rcpp RcppEigen SIMLR]; }; + ccfindR = derive2 { name="ccfindR"; version="1.24.0"; sha256="1n9dncj7d3ijk6h6fkgmh3a0c6xrfll2fifkl2bz26ndq9i4m1q9"; depends=[ape gtools irlba Matrix RColorBrewer Rcpp RcppEigen Rdpack Rmpi Rtsne S4Vectors SingleCellExperiment SummarizedExperiment]; }; + ccmap = derive2 { name="ccmap"; version="1.30.0"; sha256="16n0z3rvwaqzqgv59v73i29f66ywsabargywxwh6acv0xgnrn6w6"; depends=[AnnotationDbi BiocManager ccdata data_table doParallel foreach lsa xgboost]; }; + ccrepe = derive2 { name="ccrepe"; version="1.40.0"; sha256="1232pfjv5qd776zckhyxnj1i36raad37z9xwap9m3chqh673a7wl"; depends=[infotheo]; }; + ceRNAnetsim = derive2 { name="ceRNAnetsim"; version="1.16.0"; sha256="1zpdh9hdx3iayyrzvn67ids374pc891blag58gb28dv2xpzfqn9m"; depends=[dplyr furrr future ggplot2 ggraph igraph purrr rlang tibble tidygraph tidyr]; }; + celaref = derive2 { name="celaref"; version="1.22.0"; sha256="1l2bf3fhapvpaq30qdrc6nd1chfa4yjish9w9cq7lbhl3xm9b82z"; depends=[BiocGenerics DelayedArray dplyr ggplot2 magrittr MAST Matrix readr rlang S4Vectors SummarizedExperiment tibble]; }; + celda = derive2 { name="celda"; version="1.20.0"; sha256="0d2vmjgcz5d4nimi3rxk7smbl2ywrgayasjna7kaqvf726ab71qr"; depends=[circlize ComplexHeatmap data_table dbscan DelayedArray digest doParallel enrichR foreach ggplot2 ggrepel gridExtra gtable Matrix matrixStats MCMCprecision plyr RColorBrewer Rcpp RcppEigen reshape2 Rtsne S4Vectors scales scater scran SingleCellExperiment stringr SummarizedExperiment uwot withr]; }; + cellHTS2 = derive2 { name="cellHTS2"; version="2.68.0"; sha256="0iqsxs84dcr4d1y5pg4799vv3jpf5i1hhq4fhgdp05lanx5qqpsz"; depends=[Biobase BiocGenerics Category genefilter GSEABase hwriter locfit RColorBrewer splots vsn]; }; + cellbaseR = derive2 { name="cellbaseR"; version="1.28.0"; sha256="1g2y7pgpc500vls62xp817n9arsw8dbj3c0d9dbvb1d014gzmbdw"; depends=[BiocParallel data_table doParallel foreach httr jsonlite pbapply R_utils Rsamtools tidyr]; }; + cellity = derive2 { name="cellity"; version="1.32.0"; sha256="0m79q1c2rvv24q593c5vwsh0dsi2ahfwvf9a5pf9r9wnk3am9r3n"; depends=[AnnotationDbi e1071 ggplot2 mvoutlier org_Hs_eg_db org_Mm_eg_db robustbase topGO]; }; + cellmigRation = derive2 { name="cellmigRation"; version="1.12.0"; sha256="0ahml812f6hm05dxnlsd59bfspxbi4py205kvs0wlijygfqd1ajy"; depends=[doParallel FactoMineR FME foreach Hmisc matrixStats reshape2 sp SpatialTools tiff vioplot]; }; + cellscape = derive2 { name="cellscape"; version="1.28.0"; sha256="158cbhpjakynvm4glvajvpc1qs2im7bkjgriyvxwd9rs7y4lbfn4"; depends=[dplyr gtools htmlwidgets jsonlite reshape2 stringr]; }; + cellxgenedp = derive2 { name="cellxgenedp"; version="1.8.0"; sha256="0p3x0sfp4gpp64gwrlr71bgfk84wxf1gg19w1dxgihc8gpaxgb23"; depends=[curl dplyr DT httr rjsoncons shiny]; }; + censcyt = derive2 { name="censcyt"; version="1.12.0"; sha256="078s41rvlfwlxr2a651dff5sdbqb507qvicg84k99za6cb4707ry"; depends=[BiocParallel broom_mixed diffcyt dirmult dplyr edgeR fitdistrplus lme4 magrittr MASS mice multcomp purrr rlang S4Vectors stringr SummarizedExperiment survival tibble tidyr]; }; + cfDNAPro = derive2 { name="cfDNAPro"; version="1.10.0"; sha256="0nnqfhqq7702zc4hy05wj7rf83vgjqmnpvw90vkg4zrbc7y5fv3w"; depends=[BiocGenerics BSgenome_Hsapiens_NCBI_GRCh38 BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr plyranges quantmod rlang Rsamtools stringr tibble]; }; + cfTools = derive2 { name="cfTools"; version="1.4.0"; sha256="0hi9j7a13l18fi2m4w5x8lil1f81izivg8p8hzh3wy8idbsc46m2"; depends=[basilisk BH cfToolsData GenomicRanges R_utils Rcpp]; }; + cfdnakit = derive2 { name="cfdnakit"; version="1.2.0"; sha256="1yzhh76r8zlzdg8mpamsr6jvx4j18wkv4dg2mrgclbdmy10dxhwx"; depends=[Biobase dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr PSCBS QDNAseq rlang Rsamtools S4Vectors]; }; + cghMCR = derive2 { name="cghMCR"; version="1.62.0"; sha256="07pjh4i0j6wd51k7dyig5dg5vcp8bli50my6aibmqdvrjv0wj60w"; depends=[BiocGenerics CNTools DNAcopy limma]; }; + chihaya = derive2 { name="chihaya"; version="1.4.0"; sha256="10j05n9grh9dzb87hiq06x855c2xhi2c09jryc2ixgxd8jx6g2wy"; depends=[DelayedArray HDF5Array Matrix Rcpp rhdf5 Rhdf5lib]; }; + chimeraviz = derive2 { name="chimeraviz"; version="1.30.0"; sha256="1nx258g96v7548a742201jf6yhjf537b6pkmcijhawchnzfn38vn"; depends=[AnnotationDbi AnnotationFilter BiocStyle Biostrings checkmate data_table dplyr DT ensembldb GenomeInfoDb GenomicAlignments GenomicRanges graph gtools Gviz IRanges magick org_Hs_eg_db org_Mm_eg_db plyr RCircos RColorBrewer Rgraphviz rmarkdown Rsamtools S4Vectors]; }; + chipenrich = derive2 { name="chipenrich"; version="2.28.0"; sha256="01sfl3ik12bha3a57gm34y5gnil0akz9f3qfcp9rxsg7zdj8q1mp"; depends=[AnnotationDbi BiocGenerics chipenrich_data GenomeInfoDb GenomicRanges IRanges lattice latticeExtra MASS mgcv org_Dm_eg_db org_Dr_eg_db org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db plyr rms rtracklayer S4Vectors stringr]; }; + chipseq = derive2 { name="chipseq"; version="1.54.0"; sha256="1rd56knaf0ar8d0nh0mcnrrg5jy0csixig1d4abn1b64vbzrvzpz"; depends=[BiocGenerics GenomicRanges IRanges lattice S4Vectors ShortRead]; }; + chopsticks = derive2 { name="chopsticks"; version="1.70.0"; sha256="1lwl3fs7d2cja6n7wgpxvrplhnblabrrpqk83765aksmrk6sfk81"; depends=[survival]; }; + chromDraw = derive2 { name="chromDraw"; version="2.34.0"; sha256="1r733k8hkdhvapbwbp02ias1fjkr0pxi6m7gk2l9q3m6szydpil8"; depends=[GenomicRanges Rcpp]; }; + chromPlot = derive2 { name="chromPlot"; version="1.32.0"; sha256="187w8qm0kf8297yb5yzkd5rxzx6j03hysgpdm41dc247q50nv046"; depends=[biomaRt GenomicRanges]; }; + chromVAR = derive2 { name="chromVAR"; version="1.26.0"; sha256="092y1x1sbqvjrwmr7sv2r5216wbwwc4lk6kwn57fnvvdnc0hc3sv"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicRanges ggplot2 IRanges Matrix miniUI nabor plotly RColorBrewer Rcpp RcppArmadillo Rsamtools Rtsne S4Vectors shiny SummarizedExperiment TFBSTools]; }; + chromstaR = derive2 { name="chromstaR"; version="1.30.0"; sha256="0swkjq50p3ak0ddyg7pqg37fivdpr3v5jpakn38sk5i5ycn3qf3g"; depends=[bamsignals BiocGenerics chromstaRData doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges mvtnorm reshape2 Rsamtools S4Vectors]; }; + cicero = derive2 { name="cicero"; version="1.22.0"; sha256="0x5ly5hkqli5b67hiaa6ha02damyps7vb4l51p0az1j5fxl39n8r"; depends=[assertthat Biobase BiocGenerics data_table dplyr FNN GenomicRanges ggplot2 glasso Gviz igraph IRanges Matrix monocle plyr reshape2 S4Vectors stringi stringr tibble tidyr VGAM]; }; + circRNAprofiler = derive2 { name="circRNAprofiler"; version="1.18.0"; sha256="0gjnx4645kd7qag7dzs5dp9lhsv6zg5xn6jna3bap4mginl1jvxi"; depends=[AnnotationHub Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DESeq2 dplyr edgeR GenomeInfoDb GenomicRanges ggplot2 gwascat IRanges magrittr R_utils readr reshape2 rlang rtracklayer S4Vectors seqinr stringi stringr universalmotif]; }; + cisPath = derive2 { name="cisPath"; version="1.44.0"; sha256="1r1h5sklm6n9spxgj9rww2ib1f75lyz657awdm5ig3sdsk8f1lpn"; depends=[]; }; + cleanUpdTSeq = derive2 { name="cleanUpdTSeq"; version="1.42.0"; sha256="0fc7lwglp9asssh7yvrqr3wrgdcdapi5zh0fkqmddc1w1n83053r"; depends=[Biostrings BSgenome BSgenome_Drerio_UCSC_danRer7 e1071 GenomeInfoDb GenomicRanges IRanges S4Vectors seqinr stringr]; }; + cleaver = derive2 { name="cleaver"; version="1.42.0"; sha256="15v5jk916lfxjnkmjkm9fgza2pdr02hzgyzny29mkjd6ycj2xfa6"; depends=[Biostrings IRanges S4Vectors]; }; + clevRvis = derive2 { name="clevRvis"; version="1.4.0"; sha256="08qmhyhd9z5cpgkccz8jbk81ni51xd4rkv18clzwfk85vbkmjywn"; depends=[colorspace colourpicker cowplot dplyr DT ggiraph ggnewscale ggplot2 ggraph htmlwidgets igraph magrittr patchwork purrr R_utils readr readxl shiny shinycssloaders shinydashboard shinyhelper shinyWidgets tibble]; }; + cliProfiler = derive2 { name="cliProfiler"; version="1.10.0"; sha256="10ikijimbhwijlq19xc8x730ihix19c5z15mq138jj9p85zrqcin"; depends=[Biostrings BSgenome dplyr GenomicRanges ggplot2 rtracklayer S4Vectors]; }; + clippda = derive2 { name="clippda"; version="1.54.0"; sha256="1pfzshvrhqjazmzhznwn1ml8lgrfhwmb6q285bbs3vksgjqyxczw"; depends=[Biobase lattice limma rgl scatterplot3d statmod]; }; + clipper = derive2 { name="clipper"; version="1.44.0"; sha256="1jaf3xsl37jpwpiq9r3w13fa069jmq6b6j2inmfzdy7jx8vbfm0k"; depends=[Biobase corpcor graph gRbase igraph KEGGgraph Matrix qpgraph Rcpp]; }; + clst = derive2 { name="clst"; version="1.52.0"; sha256="0ng8zmqrnjpavl7mz4sh0qfa3bvxd12vh1568f9brm80avypp02j"; depends=[lattice ROC]; }; + clstutils = derive2 { name="clstutils"; version="1.52.0"; sha256="0ry1b3gq2mbdir84pipk8z0dkf0g1mph9yflx3snjdc4izgviasx"; depends=[ape clst lattice rjson RSQLite]; }; + clustComp = derive2 { name="clustComp"; version="1.32.0"; sha256="0dv55dhljb05jk0bqc72f0chkzmlf64wilfxfyric9gb9ksi49kq"; depends=[sm]; }; + clusterExperiment = derive2 { name="clusterExperiment"; version="2.24.0"; sha256="0pi6qnchh89fhfr50fk4hrrkz1r8gfwjcd7254pgiaxcazv2380a"; depends=[ape BiocGenerics BiocSingular cluster DelayedArray edgeR HDF5Array kernlab limma locfdr Matrix matrixStats mbkmeans NMF phylobase pracma RColorBrewer Rcpp S4Vectors scales SingleCellExperiment stringr SummarizedExperiment zinbwave]; }; + clusterProfiler = derive2 { name="clusterProfiler"; version="4.12.0"; sha256="0wmfbr4n8a1mg8g3gl9gnqrvq5p6cfay2858fqx7wxpr2q8yynhz"; depends=[AnnotationDbi DOSE downloader dplyr enrichplot GO_db GOSemSim gson httr igraph magrittr plyr qvalue rlang tidyr yulab_utils]; }; + clusterSeq = derive2 { name="clusterSeq"; version="1.28.0"; sha256="0spf8kv15dchr852apzmwpq27a7gflxvah0yrdyaq7kgqv3107l9"; depends=[baySeq BiocGenerics BiocParallel]; }; + clusterStab = derive2 { name="clusterStab"; version="1.76.0"; sha256="193lwy85202hd5fiqmwi9sd9vcbvm3zlg4grm0xvvaj2np0b3svi"; depends=[Biobase]; }; + clustifyr = derive2 { name="clustifyr"; version="1.16.0"; sha256="14c7jr4q0zij2zqpcm6jihy0ch80yfp67lvhxiakcg33xq1jvmzv"; depends=[cowplot dplyr entropy fgsea ggplot2 httr Matrix matrixStats proxy rlang S4Vectors scales SeuratObject SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; }; + cmapR = derive2 { name="cmapR"; version="1.16.0"; sha256="0gj0s6l7r5dln7h9z5y03bjxj3w73cy4x83ik1cp5nmffabypzm9"; depends=[data_table flowCore matrixStats rhdf5 SummarizedExperiment]; }; + cn_farms = derive2 { name="cn.farms"; version="1.52.0"; sha256="098p6bhibg14ahx2gn2jbqaf537w00428a8mqvzghy9519pwmsqd"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; }; + cn_mops = derive2 { name="cn.mops"; version="1.50.0"; sha256="1zf2j36g97i7ija5h2pchlvh24h2s8k3nl9k9iwlh2jxax3hnr97"; depends=[Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; + cnvGSA = derive2 { name="cnvGSA"; version="1.48.0"; sha256="1njb31i1fsvisgjjczjbc9qb7w6bz8dh4856gghkb4f9gscn06rk"; depends=[brglm doParallel foreach GenomicRanges splitstackshape]; }; + coGPS = derive2 { name="coGPS"; version="1.48.0"; sha256="07skpib02914bak5zz5rlwp61kkls9pl83yc5d5kalsqpa1sb63m"; depends=[]; }; + coMethDMR = derive2 { name="coMethDMR"; version="1.8.0"; sha256="1a0f0r11jdcf47b9nzswi9j1axhibij09lava57cv48a23hzrj6z"; depends=[AnnotationHub BiocParallel bumphunter ExperimentHub GenomicRanges IRanges lmerTest]; }; + coRdon = derive2 { name="coRdon"; version="1.22.0"; sha256="0zspxfivvc87s3mnyr8rz3a0dhjsmksvpjn4wba2zqc9hig0pkw6"; depends=[Biobase Biostrings data_table dplyr ggplot2 purrr stringr]; }; + codelink = derive2 { name="codelink"; version="1.72.0"; sha256="0maag5ns0j2c7l4pnrgb724108fmp4a2xj8nffk1kw4ag39k9xqc"; depends=[annotate Biobase BiocGenerics limma]; }; + cogena = derive2 { name="cogena"; version="1.38.0"; sha256="0w41i4mvv085pvm0ars31qy0m6alb96kni3k6lcsikqch9nqiv3z"; depends=[amap apcluster Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots kohonen mclust reshape2 stringr tibble tidyr]; }; + cogeqc = derive2 { name="cogeqc"; version="1.8.0"; sha256="056zj1hlfvzdj22p79nd567fpzlmmk12nyy1w41ymhwfy9azdhha"; depends=[Biostrings ggbeeswarm ggplot2 ggtree igraph jsonlite patchwork reshape2 rlang scales]; }; + cola = derive2 { name="cola"; version="2.10.0"; sha256="014yx4r5as34f6g1xf4amqwkq0xqa66rv8g45r4cd4fp4dv9szzg"; depends=[BiocGenerics brew circlize clue cluster ComplexHeatmap crayon digest doParallel doRNG eulerr foreach GetoptLong GlobalOptions httr impute irlba knitr markdown matrixStats mclust microbenchmark png RColorBrewer Rcpp skmeans xml2]; }; + comapr = derive2 { name="comapr"; version="1.8.0"; sha256="007r7q7p97w5rh8pvgrajlyv09m6h9q8zs0mb8xs1qw3jlkac5z4"; depends=[BiocParallel circlize dplyr foreach GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz IRanges Matrix plotly plyr RColorBrewer reshape2 rlang S4Vectors scales SummarizedExperiment tidyr]; }; + combi = derive2 { name="combi"; version="1.16.0"; sha256="1s6nxigvmxq5c2y347k87by0krda63lwynvbgagvg9h2lhb588kv"; depends=[alabama BB Biobase cobs DBI ggplot2 limma Matrix nleqslv phyloseq reshape2 SummarizedExperiment tensor vegan]; }; + compEpiTools = derive2 { name="compEpiTools"; version="1.38.0"; sha256="04yhfihszw5s61195435cczk801rb8n29zrh8rqknf0rdyccxb2q"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges GO_db gplots IRanges methylPipe Rsamtools S4Vectors topGO XVector]; }; + compSPOT = derive2 { name="compSPOT"; version="1.2.0"; sha256="1gai411y4dcc2ip73wjb56az8kjh0d34z3xij7hdhs72qg4k6955"; depends=[data_table ggplot2 ggpubr gridExtra magrittr plotly]; }; + compcodeR = derive2 { name="compcodeR"; version="1.40.0"; sha256="0szixwgk85qpyag2i8spn0shpl8r6j5xjg90js3rgrx1b8saaqbm"; depends=[ape caTools edgeR ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS matrixStats modeest phylolm rmarkdown ROCR shiny shinydashboard sm stringr vioplot]; }; + concordexR = derive2 { name="concordexR"; version="1.4.0"; sha256="0z8h4gr8lj6kpffi1zha4683ha46n5nrlc3yvyrwbf2gflzvdf3y"; depends=[BiocParallel cli DelayedArray ggplot2 Matrix pheatmap rlang scales]; }; + condiments = derive2 { name="condiments"; version="1.12.0"; sha256="0wifi5npnzmwdvh6g2xa998ccl902jka1mfs4xxgrpdbc0rxny8r"; depends=[BiocParallel distinct dplyr Ecume igraph magrittr matrixStats mgcv pbapply RANN SingleCellExperiment slingshot SummarizedExperiment TrajectoryUtils]; }; + consICA = derive2 { name="consICA"; version="2.2.0"; sha256="061v9v4gpxxmb5yn6dhh1r2x52y3ik68v1y59sfaazhlp3kg970x"; depends=[BiocParallel fastICA ggplot2 GO_db graph org_Hs_eg_db pheatmap Rfast sm SummarizedExperiment survival topGO]; }; + consensus = derive2 { name="consensus"; version="1.22.0"; sha256="09g6qmvalbnyskvv6zb49h3ph4xv3rz71y6gdfayh5jmh82nw9fd"; depends=[gplots matrixStats RColorBrewer]; }; + consensusDE = derive2 { name="consensusDE"; version="1.22.0"; sha256="051rcanakn1kmlybhc57cp80rxdgvpd0grldsw014ss8s938nz8z"; depends=[airway AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings data_table dendextend DESeq2 EDASeq edgeR EnsDb_Hsapiens_v86 ensembldb GenomicAlignments GenomicFeatures limma org_Hs_eg_db pcaMethods RColorBrewer Rsamtools RUVSeq S4Vectors SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm3_ensGene]; }; + consensusOV = derive2 { name="consensusOV"; version="1.26.0"; sha256="0a2qrjid6a5yndkhd47km40qv2c3321xypr5mwlwsq5qp48x7vvq"; depends=[Biobase BiocParallel gdata genefu GSVA limma matrixStats randomForest]; }; + consensusSeekeR = derive2 { name="consensusSeekeR"; version="1.32.0"; sha256="0da6k6i372iqh1gnd4g6ifg75hkx2rrlp2bpwf1ai3g31n8ashiw"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors stringr]; }; + conumee = derive2 { name="conumee"; version="1.38.0"; sha256="0ys8z4xgnmbg4dq81mr59imbz3p9j5ymi9y1dk030xrdh5iwi0am"; depends=[DNAcopy GenomeInfoDb GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest IRanges minfi rtracklayer]; }; + convert = derive2 { name="convert"; version="1.80.0"; sha256="0i4gdd4vhbhkhzij85w4891p9fnqkchxcdqwqqs76ipg1vgrf98v"; depends=[Biobase limma marray]; }; + copa = derive2 { name="copa"; version="1.72.0"; sha256="1v8xz09ylcja9d4gq3icm6y8k8jkavicnj22iidjnj0c2r03jwg6"; depends=[Biobase]; }; + corral = derive2 { name="corral"; version="1.14.0"; sha256="14zf8ya8yrr2bbxg8iiwxn3l7qvii0bmiwwdmypgv1qi32hx9ckp"; depends=[ggplot2 ggthemes gridExtra irlba Matrix MultiAssayExperiment pals reshape2 SingleCellExperiment SummarizedExperiment transport]; }; + coseq = derive2 { name="coseq"; version="1.28.0"; sha256="0g24q3wb15qnj3igbj93k0rlw1s6ylgzhi8106qfmpybnq3rcry5"; depends=[BiocParallel capushe compositions corrplot DESeq2 e1071 edgeR ggplot2 HTSCluster HTSFilter mvtnorm Rmixmod S4Vectors scales SummarizedExperiment]; }; + cosmiq = derive2 { name="cosmiq"; version="1.38.0"; sha256="0rvayjwg9f3ns8mv657sww9azjjbavxfxcshazn48j7rvr4bqx8z"; depends=[faahKO MassSpecWavelet pracma Rcpp xcms]; }; + cosmosR = derive2 { name="cosmosR"; version="1.12.0"; sha256="0rpy6dysf5p892dcad4z45i607km23pah4iq448g5mbzypsjkqsw"; depends=[CARNIVAL decoupleR dorothea dplyr GSEABase igraph progress purrr rlang stringr visNetwork]; }; + countsimQC = derive2 { name="countsimQC"; version="1.22.0"; sha256="0zrxi7zvdiv1xx3hiy15a3wjgqvywikixx8lq3qx85dw2kz3nfpf"; depends=[caTools DESeq2 dplyr DT edgeR genefilter GenomeInfoDbData ggplot2 ragg randtests rmarkdown SummarizedExperiment tidyr]; }; + covEB = derive2 { name="covEB"; version="1.30.0"; sha256="15yz54dhjwz6iafmvq33l43z3w887a6b7i150rqi23rzs9mabixa"; depends=[Biobase gsl igraph LaplacesDemon Matrix mvtnorm]; }; + covRNA = derive2 { name="covRNA"; version="1.30.0"; sha256="12j69j73fkfn3s20jcyixp71a5j37m405962mxa2pihlqsrh7sxl"; depends=[ade4 Biobase genefilter]; }; + cpvSNP = derive2 { name="cpvSNP"; version="1.36.0"; sha256="0kn65jzx9cif1w3hqyfjkxdcpnlk9b8msv3rk0ahdsln1d0mnyw6"; depends=[BiocParallel corpcor GenomicFeatures ggplot2 GSEABase plyr]; }; + cqn = derive2 { name="cqn"; version="1.50.0"; sha256="1gjfpz696lpvbbm38ni8b8xxkjik6zb4drhc5gd559ccp3ddy8kn"; depends=[mclust nor1mix preprocessCore quantreg]; }; + crisprBase = derive2 { name="crisprBase"; version="1.8.0"; sha256="1zw4syj12agcvjzjn3ffsd50vffsdgya7yfz62dy73wj4m2l2whq"; depends=[BiocGenerics Biostrings GenomicRanges IRanges S4Vectors stringr]; }; + crisprBowtie = derive2 { name="crisprBowtie"; version="1.8.0"; sha256="0fyihnmrl92nl1r85axz9bck6l9clvc5a6px0214i064w8dn1njj"; depends=[BiocGenerics Biostrings BSgenome crisprBase GenomeInfoDb GenomicRanges IRanges Rbowtie readr stringr]; }; + crisprBwa = derive2 { name="crisprBwa"; version="1.8.0"; sha256="1vz99b632fzxdlpw5n2z2mbx7sb9hng58np1ra7gqc2wypk0sa8x"; depends=[BiocGenerics BSgenome crisprBase GenomeInfoDb Rbwa readr stringr]; }; + crisprDesign = derive2 { name="crisprDesign"; version="1.6.0"; sha256="1zv8cc52r13b47r44qph892fhbgy1xp8xz4xf1hfyqgd7ywcl9kb"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome crisprBase crisprBowtie crisprScore GenomeInfoDb GenomicFeatures GenomicRanges IRanges Matrix MatrixGenerics rtracklayer S4Vectors txdbmaker VariantAnnotation]; }; + crisprScore = derive2 { name="crisprScore"; version="1.8.0"; sha256="1czg5l4bvi5j3afip74qgl1kqgcllb5s1gz6sy7qk1cbf1fmvril"; depends=[basilisk basilisk_utils BiocGenerics Biostrings crisprScoreData IRanges randomForest reticulate stringr XVector]; }; + crisprShiny = derive2 { name="crisprShiny"; version="1.0.0"; sha256="0fmp0gi70cv3g4c00l6g58kww9cg9rvpkhg8lsii9j8p8fj6hsjd"; depends=[BiocGenerics Biostrings BSgenome crisprBase crisprDesign crisprScore crisprViz DT GenomeInfoDb htmlwidgets pwalign S4Vectors shiny shinyBS shinyjs waiter]; }; + crisprVerse = derive2 { name="crisprVerse"; version="1.6.0"; sha256="0f81bf65xz5z5yj9iyyk3h8asyd5hg3hv3157w0kq4ablz8jr7iq"; depends=[BiocManager cli crisprBase crisprBowtie crisprDesign crisprScore crisprScoreData crisprViz rlang]; }; + crisprViz = derive2 { name="crisprViz"; version="1.6.0"; sha256="1bbawsmah9h12kxwcq97q1mjbkniivfafm95k299bb93baqillih"; depends=[BiocGenerics Biostrings BSgenome crisprBase crisprDesign GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges S4Vectors txdbmaker]; }; + crlmm = derive2 { name="crlmm"; version="1.62.0"; sha256="0b0zwawxm07iy5g9z17057dsifrwyyl5rkgn09k7vh8rkfxbdydx"; depends=[affyio beanplot Biobase BiocGenerics ellipse ff foreach illuminaio lattice limma matrixStats mvtnorm oligoClasses preprocessCore RcppEigen VGAM]; }; + crossmeta = derive2 { name="crossmeta"; version="1.30.0"; sha256="1ghgfby1rl3phldyipli550f0i289yanb0v4nzn5l1xnpkxaj6fa"; depends=[affxparser affy AnnotationDbi Biobase BiocGenerics BiocManager data_table DBI DT edgeR fdrtool GEOquery limma matrixStats metaMA miniUI oligo RCurl reader readxl RSQLite shiny shinyBS shinyjs shinypanel shinyWidgets stringr sva tibble XML]; }; + csaw = derive2 { name="csaw"; version="1.38.0"; sha256="0a870z480an3wwbp6z4qy034kvk6bvrydgk2if7x4q9k3qvknsz0"; depends=[BiocGenerics BiocParallel edgeR GenomeInfoDb GenomicRanges IRanges limma Matrix metapod Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; }; + csdR = derive2 { name="csdR"; version="1.10.0"; sha256="13g6rq95888l4ach0yrw6nrfvyxnw3b5ni01v875gfk5jl9jcllv"; depends=[glue matrixStats Rcpp RhpcBLASctl WGCNA]; }; + ctc = derive2 { name="ctc"; version="1.78.0"; sha256="09whaam2r30dq8y9r6vvc0r4sisz78c921bgx7wj6cmn2nvpgf9q"; depends=[amap]; }; + ctsGE = derive2 { name="ctsGE"; version="1.30.0"; sha256="1pqww9r71zjq4qcssffs94q2fx177jlv9n6vkm3qm9j943r1cy58"; depends=[ccaPP ggplot2 limma reshape2 shiny stringr]; }; + cummeRbund = derive2 { name="cummeRbund"; version="2.46.0"; sha256="0hdm2214waz02ybr264xis48kj2anpad80jk640p49v9r17iia9l"; depends=[Biobase BiocGenerics fastcluster ggplot2 Gviz plyr reshape2 RSQLite rtracklayer S4Vectors]; }; + customCMPdb = derive2 { name="customCMPdb"; version="1.14.0"; sha256="1j56542mp1gimnbbakbilkmb59jngvx8w47ycnaj8c1j1yhar9ll"; depends=[AnnotationHub BiocFileCache ChemmineR rappdirs RSQLite XML]; }; + customProDB = derive2 { name="customProDB"; version="1.44.0"; sha256="1pxn9nq84h9xgn2g0jzigbw7pbv4sjvf4jkzalp7l3yjax5llq3i"; depends=[AhoCorasickTrie AnnotationDbi biomaRt Biostrings DBI GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr RCurl Rsamtools RSQLite rtracklayer S4Vectors stringr txdbmaker VariantAnnotation]; }; + cyanoFilter = derive2 { name="cyanoFilter"; version="1.12.0"; sha256="1nymq5qiw5s2nfa67mccv0jn6gxy5y6sx483cw87j5pbmvg579rx"; depends=[Biobase cytometree flowClust flowCore flowDensity GGally ggplot2 mrfDepth]; }; + cycle = derive2 { name="cycle"; version="1.58.0"; sha256="0jhjjnxyx5byjdf7rh1ci1gdf8djgi4ksm17rrrrnwyrcg6y3dyb"; depends=[Biobase Mfuzz]; }; + cydar = derive2 { name="cydar"; version="1.28.0"; sha256="16lr3sry647wns2ycv3b604fmsma3a944g85c4ik7xk7ij1ady47"; depends=[Biobase BiocGenerics BiocNeighbors BiocParallel flowCore Rcpp S4Vectors shiny SingleCellExperiment SummarizedExperiment viridis]; }; + cypress = derive2 { name="cypress"; version="1.0.0"; sha256="0dyywkg41ihff6f2f6p7854qkgx3lav1rviicrik2nlxg4scl034"; depends=[abind BiocParallel checkmate DESeq2 dplyr e1071 edgeR MASS mvtnorm preprocessCore PROPER RColorBrewer rlang sirt SummarizedExperiment TCA tibble TOAST]; }; + cytoKernel = derive2 { name="cytoKernel"; version="1.10.0"; sha256="0pzcsxshc60myzhq57gxyzrfd590ggydj2nq0byca7vyzxc6z3y6"; depends=[ashr BiocParallel circlize ComplexHeatmap data_table dplyr magrittr Rcpp rlang S4Vectors SummarizedExperiment]; }; + cytoMEM = derive2 { name="cytoMEM"; version="1.8.0"; sha256="1dxam2ycwpjmk4z3jgz90swach8k2skjsq4nlh2hj694iqs4f6zj"; depends=[flowCore gplots matrixStats]; }; + cytofQC = derive2 { name="cytofQC"; version="1.4.0"; sha256="1gn383vchgxs62z9p5h7b0wnakwmwclsk46px6ah1cagykrfgas3"; depends=[CATALYST e1071 EZtune flowCore gbm ggplot2 hrbrthemes matrixStats randomForest rmarkdown S4Vectors SingleCellExperiment ssc SummarizedExperiment]; }; + cytolib = derive2 { name="cytolib"; version="2.16.0"; sha256="0nrj892jihi4fv58si3il42s0vyz3gm4gmb65kidkky63gmsy6iq"; depends=[BH Rhdf5lib RProtoBufLib]; }; + cytomapper = derive2 { name="cytomapper"; version="1.16.0"; sha256="1njdhhnzy639v4w07wvgj2gygsipzkfzhbrw63fvxfpf4r1xjzix"; depends=[BiocParallel DelayedArray EBImage ggbeeswarm ggplot2 HDF5Array matrixStats nnls raster RColorBrewer rhdf5 S4Vectors shiny shinydashboard SingleCellExperiment SpatialExperiment SummarizedExperiment svglite svgPanZoom viridis]; }; + cytoviewer = derive2 { name="cytoviewer"; version="1.4.0"; sha256="0s7jnr3z7p6v6x17a9a6cv9vbqgfk8snamcw8qkjpfd613gwk43r"; depends=[archive colourpicker cytomapper EBImage RColorBrewer S4Vectors shiny shinycssloaders shinydashboard SingleCellExperiment SummarizedExperiment svglite svgPanZoom viridis]; }; + dStruct = derive2 { name="dStruct"; version="1.10.0"; sha256="144hyris6fsbs28pz4643njnpjfb0n9w6pm220q5hid4zvhn7dh7"; depends=[ggplot2 IRanges purrr reshape2 rlang S4Vectors zoo]; }; + daMA = derive2 { name="daMA"; version="1.76.0"; sha256="1hv43r6rymp09fl7vgr8jf6naixkrgl282ggf6nva0jxf1jnfmb3"; depends=[MASS]; }; + dada2 = derive2 { name="dada2"; version="1.32.0"; sha256="1ac0nb5bcmzmqpi3vjdmns6xqq3ar61dks6qb3c0k48c78w88b7b"; depends=[BiocGenerics Biostrings ggplot2 IRanges Rcpp RcppParallel reshape2 ShortRead XVector]; }; + dagLogo = derive2 { name="dagLogo"; version="1.42.0"; sha256="1qaa63ymsirwdvy9z82c81kknhqcpip7bry4b9d8xan48m5f63xl"; depends=[BiocGenerics biomaRt Biostrings httr motifStack pheatmap UniProt_ws]; }; + dar = derive2 { name="dar"; version="1.0.0"; sha256="0l5hjx86n34k3b4cdlndl5gh62f3jxps1iq2ir3fzacpxqsimkjw"; depends=[cli ComplexHeatmap crayon dplyr generics ggplot2 glue gplots heatmaply magrittr mia phyloseq purrr readr rlang scales stringr tibble tidyr UpSetR waldo]; }; + dcGSA = derive2 { name="dcGSA"; version="1.32.0"; sha256="0203pdlv1f9s4zyh6hn2jls6b1pc8rzagrdyvsg50dk187qfvjja"; depends=[BiocParallel Matrix]; }; + dcanr = derive2 { name="dcanr"; version="1.20.0"; sha256="15way811xnlhb3qafvfibvqsvx72h8hr0jbwxvqd2dzc2gmkq2ib"; depends=[circlize doRNG foreach igraph Matrix plyr RColorBrewer reshape2 stringr]; }; + dce = derive2 { name="dce"; version="1.12.0"; sha256="1fxcbf21i8k5zydv4qqm41pm3lawkc66ic2rxhlgiwlh7c49awam"; depends=[assertthat dplyr edgeR epiNEM expm ggplot2 ggraph glm2 glue graph graphite harmonicmeanp igraph logger magrittr MASS Matrix metap mnem naturalsort org_Hs_eg_db pcalg ppcor purrr reshape2 Rgraphviz rlang shadowtext tidygraph tidyverse]; }; + ddCt = derive2 { name="ddCt"; version="1.60.0"; sha256="1q2j80wn5x0lkhpd0krsnw99rrn3kqn09d8xdi778cmvsgqxpahg"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; }; + ddPCRclust = derive2 { name="ddPCRclust"; version="1.24.0"; sha256="0nmnhykwzbyf2y9i3fi5hgwvc7m7bcikyr3c3nxyaw95f8cc52dp"; depends=[clue flowCore flowDensity flowPeaks ggplot2 openxlsx plotrix R_utils SamSPECTRAL]; }; + dearseq = derive2 { name="dearseq"; version="1.16.0"; sha256="0hy8cnqyvp2mrhj5wi1shh1cba79c5z8f17mfw764s2d6ivsfzz6"; depends=[CompQuadForm dplyr ggplot2 KernSmooth magrittr matrixStats patchwork pbapply reshape2 rlang scattermore statmod survey tibble viridisLite]; }; + debCAM = derive2 { name="debCAM"; version="1.22.0"; sha256="1lbgwv7009fpwqw6kl94gmm44xypn60r8kcm3fjzgbjbwijriwgq"; depends=[apcluster Biobase BiocParallel corpcor DMwR2 geometry NMF nnls pcaPP rJava SummarizedExperiment]; }; + debrowser = derive2 { name="debrowser"; version="1.32.0"; sha256="0qgnx44j6lxw48wlpslagjq71mfx09vrfjq528z7vzn4phrax0by"; depends=[annotate AnnotationDbi apeglm ashr clusterProfiler colourpicker DESeq2 DOSE DT edgeR enrichplot GenomicRanges ggplot2 gplots Harman heatmaply igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db pathview plotly RColorBrewer RCurl reshape2 S4Vectors shiny shinyBS shinydashboard shinyjs stringi SummarizedExperiment sva]; }; + decompTumor2Sig = derive2 { name="decompTumor2Sig"; version="2.20.0"; sha256="1pnxnxz9zsxqs7cbxgkjapr57k2m1d57w5hak0dwcy5zcxjzmai8"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo gridExtra Matrix plyr quadprog readxl S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; + decontX = derive2 { name="decontX"; version="1.2.0"; sha256="0bxpzc9fib47c5prnshzykfd5a3mcik9n1ayd7jxygxy36icgqcj"; depends=[BH celda dbscan DelayedArray ggplot2 Matrix MCMCprecision patchwork plyr Rcpp RcppEigen RcppParallel reshape2 rstan rstantools S4Vectors scater Seurat SingleCellExperiment StanHeaders SummarizedExperiment withr]; }; + decontam = derive2 { name="decontam"; version="1.24.0"; sha256="1xjd9jzxlj6gfd6fnygzm21q1wy5x5pl031sq1q0svq3jlnzvgb7"; depends=[ggplot2 reshape2]; }; + deconvR = derive2 { name="deconvR"; version="1.10.0"; sha256="181dxjj8bzy1b9xq9hd3m3ak1698w7j0sf8h9g0bhf3blzlj4pmi"; depends=[assertthat BiocGenerics data_table dplyr e1071 foreach GenomicRanges IRanges magrittr MASS matrixStats methylKit minfi nnls quadprog rsq S4Vectors tidyr]; }; + decoupleR = derive2 { name="decoupleR"; version="2.10.0"; sha256="060ww5hlzk0dvh7a52i1nrz1s2xq5mmlw70rxpcs6d4j08k1cmic"; depends=[BiocParallel broom dplyr magrittr Matrix parallelly purrr rlang stringr tibble tidyr tidyselect withr]; }; + deepSNV = derive2 { name="deepSNV"; version="1.50.0"; sha256="1rcq2bg4z6z7czqi662w5gsdc1vd4p8vb353hqayhciv31dz51fr"; depends=[Biostrings GenomicRanges IRanges Rhtslib SummarizedExperiment VariantAnnotation VGAM]; }; + deltaCaptureC = derive2 { name="deltaCaptureC"; version="1.18.0"; sha256="019c6rlsl4glc4vkbz3kfcn9d9rh3vnfw0xbcsi33hk51z89qc78"; depends=[DESeq2 GenomicRanges ggplot2 IRanges SummarizedExperiment tictoc]; }; + deltaGseg = derive2 { name="deltaGseg"; version="1.44.0"; sha256="0jdlcsajpksr58nj551r6biwir20k67ysa42bcingcrgii740yyk"; depends=[changepoint fBasics ggplot2 pvclust reshape scales tseries wavethresh]; }; + demuxSNP = derive2 { name="demuxSNP"; version="1.2.0"; sha256="0inswz7w97wdy7bhl6p87cyr11z77ipf1rsmri9c2nra8s3ix51d"; depends=[BiocGenerics class demuxmix dplyr ensembldb GenomeInfoDb IRanges KernelKnn Matrix MatrixGenerics SingleCellExperiment SummarizedExperiment VariantAnnotation]; }; + demuxmix = derive2 { name="demuxmix"; version="1.6.0"; sha256="18wn36rs7iif2cxz0iz17i0dba0llk2zkw7c81bi9v4c7lsijbcb"; depends=[ggplot2 gridExtra MASS Matrix]; }; + densvis = derive2 { name="densvis"; version="1.14.0"; sha256="1xsafzcg6psb4ld7nk4wgdaa3xhy8i2v86asasf8h3mi1ms7lcv0"; depends=[assertthat basilisk irlba Rcpp reticulate Rtsne]; }; + derfinder = derive2 { name="derfinder"; version="1.38.0"; sha256="1i4m20wb08zncksz415jl8bd5r4gdygk7324cp6xhijrc1pfzl1i"; depends=[AnnotationDbi BiocGenerics BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; }; + derfinderHelper = derive2 { name="derfinderHelper"; version="1.38.0"; sha256="0186wjrszf6c5amibmdblabx3cfvq7p7k6kza38gahw0p7ibwv21"; depends=[IRanges Matrix S4Vectors]; }; + derfinderPlot = derive2 { name="derfinderPlot"; version="1.38.0"; sha256="177j7bl552n80p2rip0zxjn72yf3pv6xg6g1hi312vapfvymcfbl"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer reshape2 S4Vectors scales]; }; + destiny = derive2 { name="destiny"; version="3.18.0"; sha256="0w7j6xh0gzhahk1r8w2wgnylq5v476jzz0g14yjmszfkzm10va3h"; depends=[Biobase BiocGenerics ggplot_multistats ggplot2 ggthemes irlba knn_covertree Matrix pcaMethods proxy Rcpp RcppEigen RcppHNSW rlang RSpectra scales scatterplot3d SingleCellExperiment smoother SummarizedExperiment tidyr tidyselect VIM]; }; + diffGeneAnalysis = derive2 { name="diffGeneAnalysis"; version="1.86.0"; sha256="1zhgsr2xs2dk45r7msy0qrrsjk21gk622d1wayflhbxsg2s9jlb1"; depends=[minpack_lm]; }; + diffHic = derive2 { name="diffHic"; version="1.36.1"; sha256="1wzlzmmrxmnwgqkxqwga73x0kpj7d968c7jgrln9xfilhhn4fkyy"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges InteractionSet IRanges limma locfit Rcpp rhdf5 Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment zlibbioc]; }; + diffUTR = derive2 { name="diffUTR"; version="1.12.0"; sha256="1rh3ndi8z6j4zr63w7nyvf5knrknzpl9525h3v9pc8m7gbk0jwk2"; depends=[ComplexHeatmap DEXSeq dplyr edgeR ensembldb GenomeInfoDb GenomicRanges ggplot2 ggrepel IRanges limma matrixStats Rsubread rtracklayer S4Vectors stringi SummarizedExperiment viridisLite]; }; + diffcoexp = derive2 { name="diffcoexp"; version="1.24.0"; sha256="1cana6v3k7qab0x0fngl4abvh4nrznjwqhaq9m6qwn75ils3bh3f"; depends=[BiocGenerics DiffCorr igraph psych SummarizedExperiment WGCNA]; }; + diffcyt = derive2 { name="diffcyt"; version="1.24.0"; sha256="1iyqvang5j55s19skd44c1zsxkphn3qqbl4sjhsw1y820ylws5r1"; depends=[circlize ComplexHeatmap dplyr edgeR flowCore FlowSOM limma lme4 magrittr multcomp reshape2 S4Vectors SummarizedExperiment tidyr]; }; + diffuStats = derive2 { name="diffuStats"; version="1.24.0"; sha256="1d46rly5y4xc7hgjhvz2wlx6193jzpw3j8kkjvybr57d9vkl7x8s"; depends=[checkmate expm igraph MASS Matrix plyr precrec Rcpp RcppArmadillo RcppParallel]; }; + diggit = derive2 { name="diggit"; version="1.36.0"; sha256="1fmz15jrdk9395a5wapwkld33xkmvr44xy2qmg8r3l21ayr7j63g"; depends=[Biobase ks viper]; }; + dinoR = derive2 { name="dinoR"; version="1.0.0"; sha256="10fmj0f3fgga26rs39c9z69w0lnb4i2i00vq354s1qh0ciya6xpc"; depends=[BiocGenerics circlize ComplexHeatmap cowplot dplyr edgeR GenomicRanges ggplot2 Matrix rlang stringr SummarizedExperiment tibble tidyr tidyselect]; }; + dir_expiry = derive2 { name="dir.expiry"; version="1.12.0"; sha256="03958xwwywsl5ql6ss1rbkklk49ksgvbp4nqcmmqhn1hiwwn8rvi"; depends=[filelock]; }; + discordant = derive2 { name="discordant"; version="1.28.0"; sha256="034nxwm0z3r0cbjpg8l6cwc6f4jnlj8v9q7r9c9ha9xk6xbah0yr"; depends=[Biobase biwt dplyr gtools MASS Rcpp]; }; + distinct = derive2 { name="distinct"; version="1.16.0"; sha256="19xpnll4fksbw5hbk3g7a8m34p7jqj31vm7jxapwxxkmng17cpka"; depends=[doParallel doRNG foreach ggplot2 limma Matrix Rcpp RcppArmadillo scater SingleCellExperiment SummarizedExperiment]; }; + dittoSeq = derive2 { name="dittoSeq"; version="1.16.0"; sha256="15p01f3yaan9x7y6ld1kx40jnbcn6vjjm5n6ir7cicdvv4w5ln49"; depends=[colorspace cowplot ggplot2 ggrepel ggridges gridExtra pheatmap reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; + divergence = derive2 { name="divergence"; version="1.20.0"; sha256="0gm9p5lnxyfww5djgar1kp1lfmi2a30w2xbmh456a2808xdygdgf"; depends=[SummarizedExperiment]; }; + dks = derive2 { name="dks"; version="1.50.0"; sha256="1j7xbdxk5ghh76fys6vnhnxf627xl70h4b7jn2mladgjw0cszklk"; depends=[cubature]; }; + dmrseq = derive2 { name="dmrseq"; version="1.24.0"; sha256="0p7xpyl1wni17y7qsincpvllaynxwppmyg6hsza51srs4dhr7sf1"; depends=[AnnotationHub annotatr BiocParallel bsseq bumphunter DelayedMatrixStats GenomeInfoDb GenomicRanges ggplot2 IRanges locfit matrixStats nlme outliers RColorBrewer rtracklayer S4Vectors]; }; + doppelgangR = derive2 { name="doppelgangR"; version="1.32.0"; sha256="1kxw5x1fwdn2hzzf6ckxz0k8qqghvr0qdx3fgx31jdla0zc9z1zm"; depends=[Biobase BiocParallel digest impute mnormt SummarizedExperiment sva]; }; + doseR = derive2 { name="doseR"; version="1.20.0"; sha256="09zr2r1vk1azrjwgx2bklv5sdypl3dba0szvh21nw1ndqyk9lwic"; depends=[digest edgeR lme4 matrixStats mclust RUnit S4Vectors SummarizedExperiment]; }; + doubletrouble = derive2 { name="doubletrouble"; version="1.4.0"; sha256="0xfrpz3ilxapcclxgf7drkwcrhvn2d70fx6q139faslp1zs19bv0"; depends=[AnnotationDbi BiocParallel Biostrings GenomicFeatures GenomicRanges ggplot2 mclust MSA2dist rlang syntenet]; }; + drawProteins = derive2 { name="drawProteins"; version="1.24.0"; sha256="1ap2lclwpr532pzapz61pd6lclq3d3idvq4462x19jaivnhf6mr5"; depends=[dplyr ggplot2 httr readr tidyr]; }; + dreamlet = derive2 { name="dreamlet"; version="1.2.1"; sha256="06mpmwjxp7zs9fsggf2b3qc5vgmx6l5s7prl6l7b753zfq5gvjbg"; depends=[ashr beachmat BiocGenerics BiocParallel broom data_table DelayedArray DelayedMatrixStats dplyr edgeR ggbeeswarm ggplot2 ggrepel GSEABase gtools IRanges irlba limma lme4 mashr MASS Matrix MatrixGenerics metafor purrr Rcpp Rdpack remaCor reshape2 rlang S4Vectors scattermore SingleCellExperiment sparseMatrixStats SummarizedExperiment tidyr variancePartition zenith]; }; + drugTargetInteractions = derive2 { name="drugTargetInteractions"; version="1.12.0"; sha256="079qy3mmv9skiybzh9ls3082wqb3r9x6fn50rgcwziapixlx2rh4"; depends=[AnnotationFilter BiocFileCache biomaRt dplyr ensembldb rappdirs RSQLite S4Vectors UniProt_ws]; }; + dupRadar = derive2 { name="dupRadar"; version="1.34.0"; sha256="0wd03v3qqmprv1n8018w0qqaw0majhx2i33qam7vf4rm2ng1gcxj"; depends=[KernSmooth Rsubread]; }; + dyebias = derive2 { name="dyebias"; version="1.64.0"; sha256="1k676kx37f6gdlrld2z7pygdf2cgin0d2cqgas83xizcq07ngnld"; depends=[Biobase marray]; }; + easier = derive2 { name="easier"; version="1.10.0"; sha256="00c0dssv41brpwsh09zh23b7r3y7vax16viwc33nniig3f724id2"; depends=[BiocParallel coin decoupleR DESeq2 dorothea dplyr easierData ggplot2 ggpubr ggrepel magrittr matrixStats progeny quantiseqr reshape2 rlang ROCR rstatix tibble tidyr]; }; + easyRNASeq = derive2 { name="easyRNASeq"; version="2.39.0"; sha256="1dfg8k2jxhnyms7nkgsdyhwca0hnm45c2p3x5dxlm8kd69z7wzdj"; depends=[Biobase BiocFileCache BiocGenerics BiocParallel biomaRt Biostrings edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD rappdirs Rsamtools S4Vectors ShortRead SummarizedExperiment]; }; + easylift = derive2 { name="easylift"; version="1.2.0"; sha256="17kc61n79iiwvwm4zpdh1a7a7q196fjs289kd95z6b7m4sp78l4b"; depends=[BiocFileCache GenomeInfoDb GenomicRanges R_utils rtracklayer]; }; + easyreporting = derive2 { name="easyreporting"; version="1.16.0"; sha256="0nlywvb35w8x90rx1b8535sls3n4kbfzkxrkm5g1ismsdxjs16cj"; depends=[rlang rmarkdown shiny]; }; + ecolitk = derive2 { name="ecolitk"; version="1.76.0"; sha256="1knnvzxlf8gsn3r0sfadlsb4ln2csjizc1i0yffpv75yxrqa0ycd"; depends=[Biobase]; }; + edge = derive2 { name="edge"; version="2.36.0"; sha256="10ddfwnvbh71q4aplb8ykahk8jmd80v0agny9mskmgkry35bi89s"; depends=[Biobase MASS qvalue sva]; }; + edgeR = derive2 { name="edgeR"; version="4.2.0"; sha256="1w3dp3h30jqylbkql33j5ibp9i4vp7n1x6wdd2v0kdnv82il6hqg"; depends=[limma locfit Rcpp]; }; + eds = derive2 { name="eds"; version="1.6.0"; sha256="006d5gx7hz51v2icq6bi1hy8r9g5qgxrf7xf3s72asny2vdn3qw4"; depends=[Matrix Rcpp]; }; + eiR = derive2 { name="eiR"; version="1.44.0"; sha256="1ia8ygj2sashjwign28xfilj7j0a4r03nmgq6qzfsyw679wq4m2v"; depends=[BiocGenerics ChemmineR DBI digest RcppAnnoy RCurl RUnit snow snowfall]; }; + eisaR = derive2 { name="eisaR"; version="1.16.0"; sha256="0in6bkakplpqvfr8zya850sdl0jr4h1qdsw1shvd9wjr3yxdmsad"; depends=[BiocGenerics edgeR GenomicRanges IRanges limma S4Vectors SummarizedExperiment]; }; + enhancerHomologSearch = derive2 { name="enhancerHomologSearch"; version="1.10.0"; sha256="00hm42zvkgz0r3s0k4ljfcbwfkysd1sw6k3zm00fxglgigvfs8r3"; depends=[BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges httr IRanges jsonlite Matrix motifmatchr pwalign Rcpp rtracklayer S4Vectors]; }; + enrichViewNet = derive2 { name="enrichViewNet"; version="1.2.0"; sha256="1xnxkcy0ifhf3d5qfngh5vrxz3699azjjigr17qm4zmq7qdsp7h2"; depends=[DOSE enrichplot gprofiler2 jsonlite RCy3 strex stringr]; }; + enrichplot = derive2 { name="enrichplot"; version="1.24.0"; sha256="0rkp1zidz34h4d02m4jqv509vw0wyrc084hvj3lxr7mb9j7rnq48"; depends=[aplot DOSE ggfun ggnewscale ggplot2 ggraph ggtree GOSemSim igraph magrittr plyr purrr RColorBrewer reshape2 rlang scatterpie shadowtext yulab_utils]; }; + ensemblVEP = derive2 { name="ensemblVEP"; version="1.46.0"; sha256="10lq13v2qww8d251digx4g50y3vab6sg9kmxkdy00q40ncn042g6"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges S4Vectors SummarizedExperiment VariantAnnotation]; }; + ensembldb = derive2 { name="ensembldb"; version="2.28.0"; sha256="10h3ngwq99y0d3ksf0303qjw263ard1zsawpq1pw5n9r5g7xll47"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; }; + epiNEM = derive2 { name="epiNEM"; version="1.28.0"; sha256="156qj9r121j6c9vr6fh2zi9aaq3kq9gabjxg4l5wj47vj1d427az"; depends=[BoolNet e1071 graph gtools igraph latex2exp lattice latticeExtra minet mnem pcalg RColorBrewer]; }; + epialleleR = derive2 { name="epialleleR"; version="1.12.0"; sha256="1jdhzcs6l3v4765dxlqc7gn2yxy9fvzk94aixl5bqxmn4v4hyasq"; depends=[BH BiocGenerics data_table GenomeInfoDb GenomicRanges Rcpp Rhtslib SummarizedExperiment VariantAnnotation zlibbioc]; }; + epidecodeR = derive2 { name="epidecodeR"; version="1.12.0"; sha256="0gmdmjvl93zgsi9yclscw94y1caspb2pnjawxhv3yqmnhjq3dzhz"; depends=[dplyr EnvStats GenomicRanges ggplot2 ggpubr IRanges rstatix rtracklayer]; }; + epigenomix = derive2 { name="epigenomix"; version="1.44.0"; sha256="1c1lwz5lbq69anpk1q7dhlfrvb66g8vrfyw7130x1c6y5yryk23k"; depends=[beadarray Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges MCMCpack Rsamtools S4Vectors SummarizedExperiment]; }; + epigraHMM = derive2 { name="epigraHMM"; version="1.12.0"; sha256="1zkb81jd2gsj92yzlxhshaw4csap9b06gyy5gl1qi3k3qkx69dq9"; depends=[bamsignals csaw data_table GenomeInfoDb GenomicRanges ggplot2 ggpubr GreyListChIP IRanges limma magrittr MASS Matrix pheatmap Rcpp RcppArmadillo rhdf5 Rhdf5lib Rsamtools rtracklayer S4Vectors scales SummarizedExperiment]; }; + epimutacions = derive2 { name="epimutacions"; version="1.8.0"; sha256="15lrkz7fqmjg5d2l77xbiqwdd3f2jnbw9nc6l4k6wglw3za3prr1"; depends=[AnnotationDbi AnnotationHub BiocGenerics BiocParallel biomaRt bumphunter ensembldb epimutacionsData ExperimentHub GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel gridExtra Gviz Homo_sapiens IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest IRanges isotree matrixStats minfi purrr reshape2 robustbase rtracklayer S4Vectors SummarizedExperiment tibble TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + epiregulon = derive2 { name="epiregulon"; version="1.0.1"; sha256="0zhnra2kl1r2kh9g21fx3nqyb5sksnf7j81dzhjnwjvmlr52xp8w"; depends=[AnnotationHub AUCell beachmat BiocParallel bluster BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 checkmate entropy ExperimentHub GenomeInfoDb GenomicRanges IRanges lifecycle Matrix motifmatchr Rcpp S4Vectors scMultiome scran scuttle SingleCellExperiment SummarizedExperiment]; }; + epiregulon_extra = derive2 { name="epiregulon.extra"; version="1.0.0"; sha256="04d85zp0yadbxrjk88arnf64hfnw67yqn60y03a0wvrw6hcv1zdz"; depends=[checkmate circlize clusterProfiler ComplexHeatmap ggplot2 ggraph igraph lifecycle Matrix patchwork reshape2 scales scater scran SingleCellExperiment SummarizedExperiment]; }; + epistack = derive2 { name="epistack"; version="1.10.0"; sha256="1kfviv9k43n6hy66x5r5hc2f7vb3y3v81qk1m9549nqvdii7ph5q"; depends=[BiocGenerics GenomicRanges IRanges plotrix S4Vectors SummarizedExperiment]; }; + epistasisGA = derive2 { name="epistasisGA"; version="1.6.0"; sha256="1rq1jgd95zamg3fsyj8nbvg95chjaf9d30xlg8d6rr071ya9f03v"; depends=[batchtools BH bigmemory BiocParallel data_table ggplot2 igraph matrixStats qgraph Rcpp RcppArmadillo survival]; }; + epivizr = derive2 { name="epivizr"; version="2.34.0"; sha256="07y6h9dk0mz5nh1ivbrf1l2smlw7y0ygdmh9k1fn50lc6120dq37"; depends=[bumphunter epivizrData epivizrServer GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + epivizrChart = derive2 { name="epivizrChart"; version="1.26.0"; sha256="0yq0mqkzvvp5mva24ky7sqa6107rcaxlircw0wg8bsalcxynvgzw"; depends=[BiocGenerics epivizrData epivizrServer htmltools rjson]; }; + epivizrData = derive2 { name="epivizrData"; version="1.32.0"; sha256="11x47w0rvn109brah7140nn5844vvmdpbgdc2c3q2ycxm40fl6rq"; depends=[Biobase ensembldb epivizrServer GenomeInfoDb GenomicFeatures GenomicRanges IRanges OrganismDbi S4Vectors SummarizedExperiment]; }; + epivizrServer = derive2 { name="epivizrServer"; version="1.32.0"; sha256="11ba652yhnl7xi7fgw3s32siwd38mrsxsklm0n6f5v081g3a7g3s"; depends=[httpuv mime R6 rjson]; }; + epivizrStandalone = derive2 { name="epivizrStandalone"; version="1.32.0"; sha256="0qrngsga0qfadbijjikfzgpl6i0vnvkcssnf1z3y1fm8mkq35b4z"; depends=[BiocGenerics epivizr epivizrServer GenomeInfoDb GenomicFeatures git2r S4Vectors]; }; + erccdashboard = derive2 { name="erccdashboard"; version="1.38.0"; sha256="0cghksf9gkgkcak8493s4pixq2nd3a7zc91vqq158g5na6ca24n7"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr qvalue reshape2 ROCR scales stringr]; }; + erma = derive2 { name="erma"; version="1.20.0"; sha256="0f4y0szdqhg63vaw7f1lmgzb72bhfpz20g9naq84s8bq2xsf8cy6"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel GenomeInfoDb GenomicFiles GenomicRanges ggplot2 Homo_sapiens IRanges rtracklayer S4Vectors shiny SummarizedExperiment]; }; + esATAC = derive2 { name="esATAC"; version="1.26.0"; sha256="0gfil57zc5bzhk29cw16bv02kng7hqs5ry1kakly1kvcfafcn87s"; depends=[AnnotationDbi BiocGenerics BiocManager Biostrings BSgenome ChIPseeker clusterProfiler corrplot digest GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 igraph IRanges JASPAR2018 knitr magrittr motifmatchr pipeFrame R_utils Rbowtie2 Rcpp rJava rmarkdown Rsamtools rtracklayer S4Vectors ShortRead TFBSTools VennDiagram]; }; + escape = derive2 { name="escape"; version="2.0.0"; sha256="03wbrxd7kjyl3d4s418ql5fv7bmwdfyfp10jd8knr0xis7vxmz2x"; depends=[AUCell BiocParallel dplyr ggdist ggplot2 ggpointdensity ggridges GSEABase GSVA MatrixGenerics msigdbr patchwork reshape2 SeuratObject SingleCellExperiment stringr SummarizedExperiment UCell]; }; + escheR = derive2 { name="escheR"; version="1.4.0"; sha256="16sqxsvpvb9idb7crbr3kq5xcifpzdw29lcxvrn2kxq003n7hbqw"; depends=[ggplot2 rlang SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + esetVis = derive2 { name="esetVis"; version="1.30.0"; sha256="1b51cv3bl11jymjwnd8150lw5ab7bpa4jj09ssisn3qnb5nym7lj"; depends=[Biobase hexbin MASS MLP mpm Rtsne]; }; + eudysbiome = derive2 { name="eudysbiome"; version="1.34.0"; sha256="12kbk17rfh1icxdj5kkz66d72p9rq4bw9nh52bvah5i3bq7wi5zn"; depends=[Biostrings plyr R_utils Rsamtools]; }; + evaluomeR = derive2 { name="evaluomeR"; version="1.20.0"; sha256="1rcffshqlkilmfyziz95pac4c0rm5jjq0y9i3r47z55zmrnr4lz4"; depends=[class cluster corrplot flexmix fpc ggdendro ggplot2 kableExtra MASS matrixStats mclust MultiAssayExperiment plotrix prabclus randomForest Rdpack reshape2 SummarizedExperiment]; }; + extraChIPs = derive2 { name="extraChIPs"; version="1.8.1"; sha256="0qmm7sffwv2b1qinwm39pahb4i1m2jk4hzwli481by24vc6p1y7j"; depends=[BiocIO BiocParallel broom ComplexUpset csaw dplyr edgeR forcats GenomeInfoDb GenomicInteractions GenomicRanges ggforce ggplot2 ggrepel ggside glue InteractionSet IRanges matrixStats patchwork RColorBrewer rlang Rsamtools rtracklayer S4Vectors scales stringr SummarizedExperiment tibble tidyr tidyselect vctrs VennDiagram]; }; + fCCAC = derive2 { name="fCCAC"; version="1.30.0"; sha256="0qvwsqvv1g4fcjhy88kq2z5nzlhhvx6p6ffaqis70wbgvr5p4aw0"; depends=[ComplexHeatmap fda genomation GenomicRanges ggplot2 IRanges RColorBrewer S4Vectors]; }; + fCI = derive2 { name="fCI"; version="1.34.0"; sha256="0szrdyw57k6wa8zr80gyxidfhcc1v88gj6bjank3dc478f1kn9d0"; depends=[FNN gtools psych rgl VennDiagram zoo]; }; + fabia = derive2 { name="fabia"; version="2.50.0"; sha256="06zlhacfs1mad26pni3fkh3ijh7ca75cr1v2gd62igsw7cf4wdli"; depends=[Biobase]; }; + factDesign = derive2 { name="factDesign"; version="1.80.0"; sha256="1g7vjb3lrx4a5ks9nsr7z7nrbf8d7f83c37b2fwacx56fbps7f51"; depends=[Biobase]; }; + factR = derive2 { name="factR"; version="1.6.0"; sha256="1y19wd0j9rlbfi2rqk73gcyszbg4p4cl2w3zqckyvv9969i9rjid"; depends=[BiocGenerics BiocParallel Biostrings crayon data_table dplyr drawProteins GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges pbapply purrr RCurl rlang rtracklayer S4Vectors stringr tibble tidyr wiggleplotr XML]; }; + faers = derive2 { name="faers"; version="1.0.0"; sha256="04q6h3hc2697dpk66ra6lppv808n0vgxk1py26nxjkpmqyc076xx"; depends=[BiocParallel brio cli curl data_table httr2 MCMCpack openEBGM rlang rvest vroom xml2]; }; + famat = derive2 { name="famat"; version="1.14.0"; sha256="099l12m27ys5glbigi9q9hr7941yy9jxrzsbxf993gs71qajlsgh"; depends=[BiasedUrn clusterProfiler dplyr DT GO_db gprofiler2 KEGGREST magrittr mgcv ontologyIndex org_Hs_eg_db plotly reactome_db rWikiPathways shiny shinyBS shinydashboard stringr tidyr]; }; + fastLiquidAssociation = derive2 { name="fastLiquidAssociation"; version="1.40.0"; sha256="0nhr2w0b491xh6bc2j9mc9a87yblr3l4kmnm8gxlnc27fav3jzj8"; depends=[doParallel Hmisc impute LiquidAssociation preprocessCore WGCNA]; }; + fastreeR = derive2 { name="fastreeR"; version="1.8.0"; sha256="0r1xngxdblgshgkr4l762kgxqaq9s79g4f3lirlkd9bb248pzfvc"; depends=[ape data_table dynamicTreeCut R_utils rJava stringr]; }; + fastseg = derive2 { name="fastseg"; version="1.50.0"; sha256="03gl7z7q90jy47q57gfbj5fkv5n8hi43jbbrl53bdyp71f26ry2d"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors]; }; + fcScan = derive2 { name="fcScan"; version="1.18.0"; sha256="1gb15zrv44yn65wns7dk24rp54qv7wafqxgk1q8jnbkq9lp5wj2y"; depends=[doParallel foreach GenomicRanges IRanges plyr rtracklayer SummarizedExperiment VariantAnnotation]; }; + fdrame = derive2 { name="fdrame"; version="1.76.0"; sha256="0a28pw2wi3l8a3x5sxq8aa52fagb678q6wbaajqznx7yflk2s88v"; depends=[]; }; + fedup = derive2 { name="fedup"; version="1.12.0"; sha256="0q1bvx8zv5c1pzi82v8yxgdxb85l7nzan8k6xwsr1xmdy224lpgf"; depends=[data_table dplyr forcats ggplot2 ggthemes openxlsx RColorBrewer RCy3 tibble]; }; + fenr = derive2 { name="fenr"; version="1.2.0"; sha256="0d0rjvnbyp8w3hkb38fgbig1211w4gj74lgdnbx52jxym2pkg32y"; depends=[assertthat BiocFileCache dplyr ggplot2 httr2 progress purrr readr rlang rvest shiny stringr tibble tidyr tidyselect]; }; + ffpe = derive2 { name="ffpe"; version="1.48.0"; sha256="1y769nnwbc9rjjpwxqgfw0v58ym4g9qy695adcyswl8z955yhjax"; depends=[affy Biobase BiocGenerics lumi methylumi sfsmisc TTR]; }; + fgga = derive2 { name="fgga"; version="1.12.0"; sha256="18bvf1qjdzd66sf479ghf3pg4cnwpwmzkhcvi6zriqd7mvsll8fr"; depends=[BiocFileCache curl e1071 graph gRbase igraph jsonlite RBGL]; }; + fgsea = derive2 { name="fgsea"; version="1.30.0"; sha256="0nnvqsyrj24h5y8qw8llk9f4jgy0v734k37kcksfcpja17frdyjy"; depends=[BH BiocParallel cowplot data_table fastmatch ggplot2 Matrix Rcpp scales]; }; + findIPs = derive2 { name="findIPs"; version="1.0.0"; sha256="08vf1i2j9h1174q5sx58hjfa62cbb6ylwzmj4bwkcibazdac5n60"; depends=[Biobase BiocParallel SummarizedExperiment survival]; }; + fishpond = derive2 { name="fishpond"; version="2.10.0"; sha256="02lzx8whxd3z4k0saf0vaq4np8lag00nkp3hd6da1w91vczs1kjl"; depends=[abind GenomicRanges gtools IRanges jsonlite Matrix matrixStats qvalue S4Vectors SingleCellExperiment SummarizedExperiment svMisc]; }; + flagme = derive2 { name="flagme"; version="1.60.0"; sha256="0gi2hwd13q4rdmzf45xcbmdpr3b3hbqabv6csmjfiqqqj4cl3wy9"; depends=[CAMERA gcspikelite gplots MASS SparseM xcms]; }; + flowAI = derive2 { name="flowAI"; version="1.34.0"; sha256="1siqza92iak5lz38hbfznqndrmq995ihp6sbam0n2d3mj8vwv9qa"; depends=[changepoint flowCore ggplot2 knitr plyr RColorBrewer reshape2 rmarkdown scales]; }; + flowBeads = derive2 { name="flowBeads"; version="1.42.0"; sha256="12zj4w37l760a5j3pwd27yjlfx6ywkcw1rxmp83pgmfwkh8jhvj1"; depends=[Biobase flowCore knitr rrcov xtable]; }; + flowBin = derive2 { name="flowBin"; version="1.40.0"; sha256="0g0kxxq4c2zm4yvi2yx1czyiiwhvmlfwvqnkyap4kbid05zy1q1i"; depends=[BiocGenerics class flowCore flowFP limma snow]; }; + flowCHIC = derive2 { name="flowCHIC"; version="1.38.0"; sha256="0zia2gsi53vbmqijljdgxmglssqfmhiqa0bzr5zr03l32aglcp4y"; depends=[EBImage flowCore ggplot2 hexbin vegan]; }; + flowClean = derive2 { name="flowClean"; version="1.42.0"; sha256="1a588wx63q10lpx7w3f0120ngiprgadr66fl3jvwi4g2yhkwpjsr"; depends=[bit changepoint flowCore sfsmisc]; }; + flowClust = derive2 { name="flowClust"; version="3.42.0"; sha256="1zjjzn10nvbj7lhg9kvp8gr7m2m294pa3zdmajq65ffdynaaavnd"; depends=[Biobase BiocGenerics flowCore graph]; }; + flowCore = derive2 { name="flowCore"; version="2.16.0"; sha256="1zq3qypmzk9ld48r50fmygfdqwwyykii8l0l6gh5bdrdan760bfn"; depends=[BH Biobase BiocGenerics cpp11 cytolib matrixStats Rcpp RProtoBufLib S4Vectors]; }; + flowCut = derive2 { name="flowCut"; version="1.14.0"; sha256="0mhdkkv8n1650wmnasprbpr5wm31s5s2in1n60rcsbb78hl7d278"; depends=[Cairo e1071 flowCore flowDensity]; }; + flowCyBar = derive2 { name="flowCyBar"; version="1.40.0"; sha256="0cf7b6wqs3wr274fwj8z346432mziv43dgs2qmx2qs6zlq6p2vya"; depends=[gplots vegan]; }; + flowDensity = derive2 { name="flowDensity"; version="1.38.0"; sha256="17v43jsrgg09ww0ga2dvryvzz4j2skzyhx51vn2lfm13fjbprhcc"; depends=[car flowCore flowViz gplots polyclip]; }; + flowFP = derive2 { name="flowFP"; version="1.62.0"; sha256="1rpmqk4w4ab6wn0gygpyzzxbgs3ds66pa2lr2sy48b4gxalpr3hc"; depends=[Biobase BiocGenerics flowCore flowViz]; }; + flowGate = derive2 { name="flowGate"; version="1.4.0"; sha256="1jag6h8inizjmfi69ybs39y4f0zqhc0rb4rrq5yzgy1s5z4ba9fi"; depends=[BiocManager dplyr flowCore flowWorkspace ggcyto ggplot2 purrr rlang shiny tibble]; }; + flowGraph = derive2 { name="flowGraph"; version="1.12.0"; sha256="1zxpiz8nm3awzkf7wqql73b9kgydgza72yp2kv59gyf1lcsli0ns"; depends=[data_table effsize furrr future ggiraph ggplot2 ggrepel gridExtra htmlwidgets igraph Matrix matrixStats purrr Rdpack stringi stringr visNetwork]; }; + flowMatch = derive2 { name="flowMatch"; version="1.40.0"; sha256="0k83702b9k5nsng67awr7mz3jq9yxs4dkvvg2hcn29m1s42a2i63"; depends=[Biobase flowCore Rcpp]; }; + flowMeans = derive2 { name="flowMeans"; version="1.64.0"; sha256="0bkp3q71qj1r2bwfpfriflqklvcqpvh760as7sr489sb18y1xlms"; depends=[Biobase feature flowCore rrcov]; }; + flowMerge = derive2 { name="flowMerge"; version="2.52.0"; sha256="1z675mj3jsi0n9x03nbw12z001c8jz9pm64ypvb1g6f51bnq1fyx"; depends=[feature flowClust flowCore foreach graph Rgraphviz rrcov snow]; }; + flowPeaks = derive2 { name="flowPeaks"; version="1.50.0"; sha256="065nkldia602w36bks394qdf96330ahnrz9jpks2gv8r91pk7pf5"; depends=[]; }; + flowPloidy = derive2 { name="flowPloidy"; version="1.30.0"; sha256="06grhvskia03xakfcs776fiz7i3i04crysykrmnyz1jxbaa2irba"; depends=[car caTools flowCore knitr minpack_lm rmarkdown shiny]; }; + flowPlots = derive2 { name="flowPlots"; version="1.52.0"; sha256="03kpsfdfr3hwlqjbyq787dnhixg1zs22chi2y1776zjpvxp94ixf"; depends=[]; }; + flowSpecs = derive2 { name="flowSpecs"; version="1.18.0"; sha256="1774h2sgabnynhc8xlc3ngnkspvs544hhb5ijk3xm2p4ah2md0w1"; depends=[Biobase BiocGenerics BiocParallel flowCore ggplot2 reshape2 zoo]; }; + flowStats = derive2 { name="flowStats"; version="4.16.0"; sha256="0q8g3sqmbhinfrb63yhv4lsczjz7pqwhwwsdlz2cg7s8yhp0cj6v"; depends=[Biobase BiocGenerics clue cluster corpcor fda flowCore flowViz flowWorkspace KernSmooth ks lattice MASS mnormt ncdfFlow RColorBrewer rrcov]; }; + flowTime = derive2 { name="flowTime"; version="1.28.0"; sha256="1z7djyka5cpaa3bfgz9q8kwv50k6k5fd666415szfiq5vnlpvn4y"; depends=[dplyr flowCore magrittr plyr rlang tibble]; }; + flowTrans = derive2 { name="flowTrans"; version="1.56.0"; sha256="0i8rr5qrfszh03j5ch90nqf4ayqamh2kk2c7g1brxbi31qvkm9ag"; depends=[flowClust flowCore flowViz]; }; + flowVS = derive2 { name="flowVS"; version="1.36.0"; sha256="1k7rhy3lqc52r4hg68r4rw0l31v37bsp2f8k8palia4bqzmqy375"; depends=[flowCore flowStats flowViz]; }; + flowViz = derive2 { name="flowViz"; version="1.68.0"; sha256="1iz4skfs68jg2a59kfaxllf19mp9pk9mpfc2jh3vyas14c3l3zzj"; depends=[Biobase flowCore hexbin IDPmisc KernSmooth lattice latticeExtra MASS RColorBrewer]; }; + flowWorkspace = derive2 { name="flowWorkspace"; version="4.16.0"; sha256="0k22hifg4sv0xiw983gf1d6y7zkn9072famwj72x47w8vag4i0xz"; depends=[BH Biobase BiocGenerics cpp11 cytolib data_table DelayedArray dplyr flowCore ggplot2 graph matrixStats ncdfFlow RBGL Rgraphviz Rhdf5lib RProtoBufLib S4Vectors scales XML]; }; + flowcatchR = derive2 { name="flowcatchR"; version="1.38.0"; sha256="0g9jza9gs526ch5sa9m91yrmf6n8l73052n41r2zvdwamzh9a6r9"; depends=[abind BiocParallel colorRamps EBImage plotly shiny]; }; + fmcsR = derive2 { name="fmcsR"; version="1.46.0"; sha256="080src34jwkvbk98pa4ri530l9gi4ibr5mwxib1681np0cfal54g"; depends=[BiocGenerics ChemmineR RUnit]; }; + fmrs = derive2 { name="fmrs"; version="1.14.0"; sha256="0vwj90snn2mjai762426c62m5rmmkywpvnjjgv9cns4azzbjqq4y"; depends=[survival]; }; + fobitools = derive2 { name="fobitools"; version="1.12.0"; sha256="0n9zckl2zx7hcqz94xa32frra7v11y4gss1wdcdicj2sm40k9hgq"; depends=[clisymbols crayon dplyr fgsea ggplot2 ggraph magrittr ontologyIndex purrr RecordLinkage stringr textclean tictoc tidygraph tidyr vroom]; }; + frenchFISH = derive2 { name="frenchFISH"; version="1.16.0"; sha256="0lchnhchabj69ccw9pi1nz6l4k39kwin7cdyg9j5zq54i5lwzgg3"; depends=[MCMCpack NHPoisson]; }; + frma = derive2 { name="frma"; version="1.56.0"; sha256="0gg6hybrysqsd04dv3z7p1wx7zb35zk10f76c3yfhxg1wzv0f4wr"; depends=[affy Biobase BiocGenerics DBI MASS oligo oligoClasses preprocessCore]; }; + frmaTools = derive2 { name="frmaTools"; version="1.56.0"; sha256="0ksnk253vvxrfql6wgbzmm64173fqv2lcls83iv4lgihix978x5x"; depends=[affy Biobase DBI preprocessCore]; }; + funtooNorm = derive2 { name="funtooNorm"; version="1.28.0"; sha256="1immis03wkcgzfpb4jbb9zz58707g06mbrq15ls04fmf6mkjj8im"; depends=[GenomeInfoDb IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest matrixStats minfi pls]; }; + gCrisprTools = derive2 { name="gCrisprTools"; version="2.10.0"; sha256="1h7qx8j46sqhkrdln7mbw38w7p3n6c8sw1311kk2pady0bw14hqh"; depends=[Biobase ComplexHeatmap ggplot2 limma rmarkdown RobustRankAggreg SummarizedExperiment]; }; + gDNAx = derive2 { name="gDNAx"; version="1.2.0"; sha256="12pyiwhwlxskq17vwmdwh5g3zlzbd15mbrxjv1pliblbzjvxfpzx"; depends=[AnnotationDbi AnnotationHub BiocGenerics BiocParallel Biostrings bitops cli GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges IRanges matrixStats plotrix RColorBrewer Rsamtools S4Vectors SummarizedExperiment]; }; + gDR = derive2 { name="gDR"; version="1.2.0"; sha256="0jhsnaabp8amljw8g64ly15nc10rjfsk5vd1pxpqq1fzyh72s1xa"; depends=[gDRcore gDRimport gDRutils]; }; + gDRcore = derive2 { name="gDRcore"; version="1.2.0"; sha256="14hnmym7pzgfm4gmvq0dc0bym3kpr769fcdpspvqyzgq3b5swbva"; depends=[BiocParallel BumpyMatrix checkmate data_table futile_logger gDRutils MultiAssayExperiment purrr S4Vectors stringr SummarizedExperiment]; }; + gDRimport = derive2 { name="gDRimport"; version="1.2.0"; sha256="1jfp3vgy2r0kmakn063bp1nrnwjfx2xxz0drkry5ghdmjig0g25y"; depends=[assertthat BumpyMatrix checkmate CoreGx data_table futile_logger gDRutils magrittr MultiAssayExperiment openxlsx PharmacoGx readxl rio S4Vectors stringi SummarizedExperiment tibble XML yaml]; }; + gDRstyle = derive2 { name="gDRstyle"; version="1.2.0"; sha256="0khl0h07ixcsdn984f60d7fshhbs755c6bcxqwk3rzl54xb9cmj8"; depends=[BiocCheck BiocManager checkmate desc git2r lintr pkgbuild rcmdcheck remotes rjson withr yaml]; }; + gDRutils = derive2 { name="gDRutils"; version="1.2.0"; sha256="0ql75k7aysf5kphjkajp2sshg953vx3nskg6qzhd8cc4lvldx9kq"; depends=[BiocParallel BumpyMatrix checkmate data_table drc jsonlite jsonvalidate MultiAssayExperiment S4Vectors stringr SummarizedExperiment]; }; + gINTomics = derive2 { name="gINTomics"; version="1.0.0"; sha256="0dscrxy846v5nv1fc0wfd5v7axwdhwpxhh0y9dwq25sdyfzknl8g"; depends=[AnnotationDbi BiocGenerics BiocParallel biomaRt callr circlize clusterProfiler ComplexHeatmap dplyr DT edgeR GenomicFeatures GenomicRanges ggplot2 ggridges ggtree ggvenn gtools InteractiveComplexHeatmap limma MASS MultiAssayExperiment OmnipathR org_Hs_eg_db org_Mm_eg_db plotly plyr randomForest RColorBrewer ReactomePA reshape2 shiny shiny_gosling shinydashboard stringi stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg38_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene visNetwork]; }; + gaga = derive2 { name="gaga"; version="2.50.0"; sha256="10qckg06yf44x1giisglw978l63c4p9bdlrfh8q0i7cb19zihbnf"; depends=[Biobase coda EBarrays mgcv]; }; + gage = derive2 { name="gage"; version="2.54.0"; sha256="0iwdv9y5x0na38arjqacz00s7plk7aqc1h2ynhlpbyl3nz0a0kyq"; depends=[AnnotationDbi GO_db graph KEGGREST]; }; + garfield = derive2 { name="garfield"; version="1.32.0"; sha256="0lcfqsv4ffsgnpsxdij5graaryvxqkyvsx7n6bkglclg1syr32dw"; depends=[]; }; + gatom = derive2 { name="gatom"; version="1.2.0"; sha256="1cmhlhr2gkfgpgncr9dy3qq0q764vhr5c7zgpbnnvp5qg95y6n6g"; depends=[BioNet data_table GGally ggplot2 htmltools htmlwidgets igraph intergraph network plyr pryr shinyCyJS sna XML]; }; + gcapc = derive2 { name="gcapc"; version="1.28.0"; sha256="0k6k73i1mv6pxkpy2mq3xr0rfpn8rqa5wj1hjx3r3dqpw4rv8izl"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS matrixStats Rsamtools S4Vectors]; }; + gcatest = derive2 { name="gcatest"; version="2.4.0"; sha256="1jdbiv0mh0kfxn05k349h192b32rzs65l7xjkiw1rpzca649fldn"; depends=[lfa]; }; + gcrma = derive2 { name="gcrma"; version="2.76.0"; sha256="01b9b4v19yh42552awl21yyx9vhf9yh9r3l8849x4zwjpnf6anp3"; depends=[affy affyio Biobase BiocManager Biostrings XVector]; }; + gdsfmt = derive2 { name="gdsfmt"; version="1.40.0"; sha256="1ska6q1800mmsxi6jilpnq4f6cy3vk0nb98gz3ik94lmbv2ram97"; depends=[]; }; + geNetClassifier = derive2 { name="geNetClassifier"; version="1.44.0"; sha256="0jfczma8sh9dza105v306xr371f8mndndm6kw3ydgqlxd8zk3a6l"; depends=[Biobase e1071 EBarrays minet]; }; + gemini = derive2 { name="gemini"; version="1.18.0"; sha256="1yfizm9hk7ak1lgf89zn7r768n82dzbiyd6fqrybhl1m4k5a8zh4"; depends=[dplyr ggplot2 magrittr mixtools pbmcapply scales]; }; + gemma_R = derive2 { name="gemma.R"; version="3.0.6"; sha256="0aprq1ac2npnbs8ic8lq2z1rp67gsff7450sg08gri40mcrn8xz5"; depends=[assertthat Biobase bit64 data_table digest glue httr jsonlite lubridate magrittr memoise rappdirs rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; + genArise = derive2 { name="genArise"; version="1.80.0"; sha256="0r5d1nw2bqvh3yivx73l2ln3y78kqsrvx3xm4sw61m48gszb69x5"; depends=[locfit tkrplot xtable]; }; + geneAttribution = derive2 { name="geneAttribution"; version="1.30.0"; sha256="0qzp9d1v88qamahl4knnv6adx863jpnhc5w0v9fpqliw04gqnczn"; depends=[BiocGenerics GenomeInfoDb GenomicFeatures GenomicRanges IRanges org_Hs_eg_db rtracklayer]; }; + geneClassifiers = derive2 { name="geneClassifiers"; version="1.28.0"; sha256="0zsjb7a30jvkskpg2awxxzdq2rnrpy2nrv89qrqq51h5blln4l2r"; depends=[Biobase BiocGenerics]; }; + geneRecommender = derive2 { name="geneRecommender"; version="1.76.0"; sha256="1vd04lqrqzfzjz2xpm0gd2gg38rvfz7c8ikz5ypr82mcbq3v7gfl"; depends=[Biobase]; }; + geneRxCluster = derive2 { name="geneRxCluster"; version="1.40.0"; sha256="109ghiv5j33g35d7l71z8s7nc2vb997j5i6vh43nrrygsgc53ywm"; depends=[GenomicRanges IRanges]; }; + geneXtendeR = derive2 { name="geneXtendeR"; version="1.30.0"; sha256="06rmxlahnf0xiwvyfl6h9727g8cm24zk6p27j5bb4vln4phb81x7"; depends=[AnnotationDbi BiocStyle data_table dplyr GO_db networkD3 org_Rn_eg_db RColorBrewer rtracklayer SnowballC tm wordcloud]; }; + genefilter = derive2 { name="genefilter"; version="1.86.0"; sha256="0jp7jvgzb1bs0p76j9k8lhgliipjnif6bng7hdn5wi744jb5fmpr"; depends=[annotate AnnotationDbi Biobase MatrixGenerics survival]; }; + genefu = derive2 { name="genefu"; version="2.36.0"; sha256="032xfs2vp0n0r3sz79fs0v8q28n2sqbnazfwkc3p9dwh4s7nqfwx"; depends=[AIMS amap biomaRt impute limma mclust survcomp]; }; + geneplast = derive2 { name="geneplast"; version="1.30.0"; sha256="1z76dpa7cmzidw3512ynphrrqcqvbrp1bbl8bzcf3jsjdshy7mm7"; depends=[ape data_table igraph snow]; }; + geneplotter = derive2 { name="geneplotter"; version="1.82.0"; sha256="19znr3vwp20x84jiwy0im7s6vd8a71yng8w2ji88ffzq0xdkyyjm"; depends=[annotate AnnotationDbi Biobase BiocGenerics lattice RColorBrewer]; }; + genoCN = derive2 { name="genoCN"; version="1.56.0"; sha256="1nqxp99g3maxjip9mvpkdm2n6v5vmw7dnkni3nfv2azd12cl9ka1"; depends=[]; }; + genomation = derive2 { name="genomation"; version="1.36.0"; sha256="1bfy46kka77q93s42hsbxpiynfkin5mh7cz3w592smw2dzkh01j4"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges matrixStats plotrix plyr Rcpp readr reshape2 Rsamtools rtracklayer S4Vectors seqPattern]; }; + genomeIntervals = derive2 { name="genomeIntervals"; version="1.60.0"; sha256="1gyp2aa335gljb4igwg8c92m4rwwxwsv49dlj341gqphbx8b1vbr"; depends=[BiocGenerics GenomeInfoDb GenomicRanges intervals IRanges S4Vectors]; }; + genomes = derive2 { name="genomes"; version="3.34.0"; sha256="1qb4bpyz7z6yqz4xlrx7gq9afdpqdk0ax4aas5pzx1cqxq31yii9"; depends=[curl readr]; }; + genomicInstability = derive2 { name="genomicInstability"; version="1.10.0"; sha256="08clvnj3pfxr0y8n2bh55x7aqs8pa6kjy5w8si78r5k2ywwxxl5y"; depends=[checkmate mixtools SummarizedExperiment]; }; + gep2pep = derive2 { name="gep2pep"; version="1.24.0"; sha256="1i8m3k7l5ymx6c0d6hrl6c1yn2fjvvrrpsf08r64ksl750cvab87"; depends=[Biobase digest foreach GSEABase iterators repo rhdf5 XML]; }; + gespeR = derive2 { name="gespeR"; version="1.36.0"; sha256="1c7pimggz4px7455frmg4fjbajl9pnw1wdi480wf0hcjfakk1i9h"; depends=[Biobase biomaRt cellHTS2 doParallel dplyr foreach ggplot2 glmnet Matrix reshape2]; }; + getDEE2 = derive2 { name="getDEE2"; version="1.14.0"; sha256="1hkxyic2pjpxj5mbdf2lmkk7jm8ycmcjwychhy62qlvvcg58cd21"; depends=[htm2txt SummarizedExperiment]; }; + geva = derive2 { name="geva"; version="1.12.0"; sha256="1wbw8dqimfl6g57v9ix0c8hmyy0kkc33pwvi2ifrfsfcmr6gkv1x"; depends=[dbscan fastcluster matrixStats]; }; + gg4way = derive2 { name="gg4way"; version="1.2.0"; sha256="12hv274gsiym6ph83q3qphnl7bdh1j5af4g2hz8jvqrj1nbm34h8"; depends=[DESeq2 dplyr edgeR ggplot2 ggrepel glue janitor limma magrittr purrr rlang scales stringr tibble tidyr]; }; + ggbio = derive2 { name="ggbio"; version="1.52.0"; sha256="0g6h1h8azy79pzm0g8967f58gp33nl8866b285ybq6501nj8pb1p"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings biovizBase BSgenome ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 rlang Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; }; + ggcyto = derive2 { name="ggcyto"; version="1.32.0"; sha256="0z4cfpylj2y3jcljzg15fpjnrhrpzgw49kcprq5sg4cxr96ia2rm"; depends=[data_table flowCore flowWorkspace ggplot2 gridExtra hexbin ncdfFlow plyr RColorBrewer rlang scales]; }; + ggkegg = derive2 { name="ggkegg"; version="1.2.0"; sha256="177hz7xfkfjzqb7v2c3jf94jqa0ckcmxb5w64jy25lci8bl1klaw"; depends=[AnnotationDbi BiocFileCache data_table dplyr GetoptLong ggplot2 ggraph gtable igraph magick org_Hs_eg_db patchwork shadowtext stringr tibble tidygraph XML]; }; + ggmanh = derive2 { name="ggmanh"; version="1.8.0"; sha256="0h7idg7s2s51gcd4fjbpad0kaq13xa5jxv34fwrw02285rl7zw7b"; depends=[gdsfmt ggplot2 ggrepel RColorBrewer rlang scales SeqArray]; }; + ggmsa = derive2 { name="ggmsa"; version="1.10.0"; sha256="0pmy9aakp503aa3d9g96ajms153kphyr0shlnap5axxy6s99s2ak"; depends=[aplot Biostrings dplyr ggalt ggforce ggplot2 ggtree magrittr R4RNA RColorBrewer seqmagick statebins tidyr]; }; + ggsc = derive2 { name="ggsc"; version="1.2.0"; sha256="1869xwlc4hqyzankrx3m7jara9am86pc8cw5lfdqfvf2ndp6ijdv"; depends=[cli dplyr ggfun ggplot2 RColorBrewer Rcpp RcppArmadillo RcppParallel rlang scales scattermore Seurat SingleCellExperiment SummarizedExperiment tibble tidydr tidyr yulab_utils]; }; + ggspavis = derive2 { name="ggspavis"; version="1.10.0"; sha256="0acbsbqnkl1xw9i3pgz1bibgzyvv52jzmyvnmggn5ag92ldd459c"; depends=[ggplot2 ggrepel ggside RColorBrewer scales SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + ggtree = derive2 { name="ggtree"; version="3.12.0"; sha256="1bm7c46k8qbajjvl8475b7fcd0dvg9s1bir8313qgm466qm6immh"; depends=[ape aplot cli dplyr ggfun ggplot2 magrittr purrr rlang scales tidyr tidytree treeio yulab_utils]; }; + ggtreeDendro = derive2 { name="ggtreeDendro"; version="1.6.0"; sha256="1p7gxcaadlvh54y5j82yqarwz6jfhlzi6k6p0zmxxi17s70202x6"; depends=[ggplot2 ggtree tidytree]; }; + ggtreeExtra = derive2 { name="ggtreeExtra"; version="1.14.0"; sha256="1wy229rnp356hi144flm9fvhv414jxmxc967f7pyqwl4abiwlmzm"; depends=[cli ggnewscale ggplot2 ggtree magrittr rlang tidytree]; }; + ggtreeSpace = derive2 { name="ggtreeSpace"; version="1.0.0"; sha256="0ny22m469mnr70ipwy6brch1g5vklk5i0qkbgbpwrsdvi6vkibsr"; depends=[ape dplyr GGally ggplot2 ggtree interp phytools rlang tibble tidyr tidyselect]; }; + ginmappeR = derive2 { name="ginmappeR"; version="1.0.0"; sha256="1xq49lsfw7zri66nxn1z8s2w9ylhl3s07lwm7vqq6xjgfwfd8jn2"; depends=[cachem httr KEGGREST memoise rentrez UniProt_ws XML]; }; + girafe = derive2 { name="girafe"; version="1.56.0"; sha256="17ma5xfqzy19cigim0bqkqvwln3qji2f5x4qwb74i40j2lbqn9qi"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges pwalign Rsamtools S4Vectors ShortRead]; }; + glmGamPoi = derive2 { name="glmGamPoi"; version="1.16.0"; sha256="1my8v0zx5xsxjf8dj2yw92b8zp725hxhb2vrl5ccgz2w9xkn0dkj"; depends=[beachmat BiocGenerics DelayedArray DelayedMatrixStats HDF5Array MatrixGenerics matrixStats Rcpp RcppArmadillo rlang SingleCellExperiment SummarizedExperiment vctrs]; }; + glmSparseNet = derive2 { name="glmSparseNet"; version="1.22.0"; sha256="1yyl2i3f5s1l5q17471zwlj9cksbsnkv227qdlsgvzl0i9sh4m2h"; depends=[biomaRt checkmate dplyr forcats futile_logger ggplot2 glmnet glue httr lifecycle Matrix MultiAssayExperiment readr rlang SummarizedExperiment survminer TCGAutils]; }; + globalSeq = derive2 { name="globalSeq"; version="1.32.0"; sha256="0jqi2jld7s4krvk0i3rzc7m5h4rvja8zbjvdjw0ck425p180m3wb"; depends=[]; }; + globaltest = derive2 { name="globaltest"; version="5.58.0"; sha256="1cpvs1jcp9ibis06pkbqvhhksy6cis0zynx774d0hqdbb9ljl945"; depends=[annotate AnnotationDbi Biobase survival]; }; + gmapR = derive2 { name="gmapR"; version="1.46.0"; sha256="0zmn3gj5aamrkx0pa15fd2n2l7i0z8fkr4i2b9i50qgp7b46yv03"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; + gmoviz = derive2 { name="gmoviz"; version="1.16.0"; sha256="01znh8vfhqyls6f1y0zl3hnp67j4q6gzf6fjv3dx214ks6h3vk47"; depends=[BiocGenerics Biostrings circlize colorspace ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridBase IRanges pracma Rsamtools rtracklayer S4Vectors]; }; + goProfiles = derive2 { name="goProfiles"; version="1.66.0"; sha256="1yj9002d99rpsqgxj4wibzmykjpl5091g1aymshkgxqcf456pq14"; depends=[AnnotationDbi Biobase CompQuadForm GO_db stringr]; }; + goSTAG = derive2 { name="goSTAG"; version="1.28.0"; sha256="195vdjaxq8xwyz5ib9csk0a1fw6l9pzkpji78l3pbh9p5clw5592"; depends=[AnnotationDbi biomaRt GO_db memoise]; }; + goSorensen = derive2 { name="goSorensen"; version="1.6.0"; sha256="1n0i9xmdxnh52lg60klblgi6bzfa910p4ajavir725p84hbqxdjh"; depends=[clusterProfiler GO_db goProfiles org_Hs_eg_db stringr]; }; + goTools = derive2 { name="goTools"; version="1.78.0"; sha256="17xpmlsy35a72mbk5c3am85ihgdbwzzaspkb2cfnww9gcnsk6is5"; depends=[AnnotationDbi GO_db]; }; + goseq = derive2 { name="goseq"; version="1.56.0"; sha256="0bc7dcpz0agbc42f8agf05amyhpavz55fdp622if5af5dn1ww6pr"; depends=[AnnotationDbi BiasedUrn BiocGenerics geneLenDataBase GO_db mgcv]; }; + gpls = derive2 { name="gpls"; version="1.76.0"; sha256="0n2m4himkdzazshiwvxybp5rr1d6jsg60lc5dbsk40grra3w2g4m"; depends=[]; }; + gpuMagic = derive2 { name="gpuMagic"; version="1.20.0"; sha256="06ga6xkk95kgnzgy95kzysz8nim9v9aq2s6742hhknjndhy59n28"; depends=[BiocGenerics Deriv DescTools digest pryr Rcpp stringr]; }; + granulator = derive2 { name="granulator"; version="1.12.0"; sha256="0757xhxn3156687nz8dksqqs0ifafrdwz0am532pw3xf5hirdz81"; depends=[cowplot dplyr dtangle e1071 epiR ggplot2 ggplotify limSolve magrittr MASS nnls pheatmap purrr rlang tibble tidyr]; }; + graper = derive2 { name="graper"; version="1.20.0"; sha256="1hczvcv3kxzbxigbcxmsiwadxbwldipsv7slmsyznrkpwws4liwi"; depends=[BH cowplot ggplot2 Matrix matrixStats Rcpp RcppArmadillo]; }; + graph = derive2 { name="graph"; version="1.82.0"; sha256="1wa10s9a8p6lajim1lbw4rxyc4fz7y6fpymrh0c0ip85971cd9hv"; depends=[BiocGenerics]; }; + graphite = derive2 { name="graphite"; version="1.50.0"; sha256="1xymgghgj4r1k9i73zqgava79l0djz945jnl5ad193flv13fpdgs"; depends=[AnnotationDbi graph httr purrr rappdirs rlang]; }; + groHMM = derive2 { name="groHMM"; version="1.38.0"; sha256="1vmck9ridjjk22477sv8wx0x7n5irrsaf6nsh9lm3krk4i3iv715"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; }; + gscreend = derive2 { name="gscreend"; version="1.18.0"; sha256="1y41rai3hhp290ga0ddcgs0jyri4aavcbyycs8z887h787sbihrn"; depends=[BiocParallel fGarch nloptr SummarizedExperiment]; }; + gsean = derive2 { name="gsean"; version="1.24.0"; sha256="14b4fg51j995af4i8lx84908jnlhw1y7j01871iy80s13d8nnz9b"; depends=[fgsea PPInfer]; }; + gtrellis = derive2 { name="gtrellis"; version="1.36.0"; sha256="1qlsjpjxcw96qhrqjlbbinpry9yagn50jc3dnz459dbfvnywr82q"; depends=[circlize GenomicRanges GetoptLong IRanges]; }; + gwascat = derive2 { name="gwascat"; version="2.36.0"; sha256="08b70drlasws3h9d8iznaxxp0qf4n1fi943m4yngy1c65h3a30rc"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges readr S4Vectors snpStats VariantAnnotation]; }; + gwasurvivr = derive2 { name="gwasurvivr"; version="1.22.0"; sha256="0d9a9lrdpizh0bayq5yhqrssarbk90afn9s3cbkdxjrjgvlcair7"; depends=[GWASTools matrixStats SNPRelate SummarizedExperiment survival VariantAnnotation]; }; + gypsum = derive2 { name="gypsum"; version="1.0.1"; sha256="1zrmxmlnbiifc2p5mn10y3vpmyzqjimd2hvc3s9c0j0iv6ryxjv0"; depends=[filelock httr2 jsonlite]; }; + h5vc = derive2 { name="h5vc"; version="2.38.0"; sha256="0nv6x14adjwz7izsfyirnr13k9aa5kh34nqq9p4lawxa76d0bv4p"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra h5vcData IRanges reshape rhdf5 Rhtslib Rsamtools S4Vectors]; }; + hapFabia = derive2 { name="hapFabia"; version="1.46.0"; sha256="0vqfljpdlsdnq0ms98ar2niy5yrlmixlwvaq5ynfvsrpr8hj4wwq"; depends=[Biobase fabia]; }; + hca = derive2 { name="hca"; version="1.12.0"; sha256="143np5y93b3ik5lrjiz7hhwwp89hq8h9ygvprydwcvn6k530111r"; depends=[BiocFileCache digest dplyr DT httr jsonlite miniUI readr shiny tibble tidyr]; }; + heatmaps = derive2 { name="heatmaps"; version="1.28.0"; sha256="0295lsiicwcdsnm1annyix7na6xipmvany8qpqwi4d87i5z2imhw"; depends=[BiocGenerics Biostrings EBImage GenomeInfoDb GenomicRanges IRanges KernSmooth Matrix plotrix RColorBrewer]; }; + hermes = derive2 { name="hermes"; version="1.8.0"; sha256="0acnxrbjdmjr73y12m4k62sazixpfp01790byrybg6l76j4y2akm"; depends=[assertthat Biobase BiocGenerics biomaRt checkmate circlize ComplexHeatmap DESeq2 dplyr edgeR EnvStats forcats GenomicRanges ggfortify ggplot2 ggrepel IRanges lifecycle limma magrittr matrixStats MultiAssayExperiment purrr R6 Rdpack rlang S4Vectors SummarizedExperiment tidyr]; }; + hiAnnotator = derive2 { name="hiAnnotator"; version="1.38.0"; sha256="1mi15zpqbsf1x2bdagnd7mwspz7pdiq8v7s6a44zwxl0sas2qdmi"; depends=[BSgenome dplyr foreach GenomicRanges ggplot2 iterators rtracklayer scales]; }; + hiReadsProcessor = derive2 { name="hiReadsProcessor"; version="1.40.0"; sha256="11hiz5ymjyjmsr78060602xi07lbjsq7gs4nh0pknjph2mzx9nqi"; depends=[BiocGenerics BiocParallel Biostrings dplyr GenomicAlignments GenomicRanges hiAnnotator pwalign readxl sonicLength]; }; + hicVennDiagram = derive2 { name="hicVennDiagram"; version="1.2.0"; sha256="02ym5qiz38viddsrxmn3v6q791gwrc36hi505vcaar1fj2kblx2w"; depends=[ComplexUpset eulerr GenomeInfoDb GenomicRanges ggplot2 htmlwidgets InteractionSet IRanges reshape2 rtracklayer S4Vectors svglite]; }; + hierGWAS = derive2 { name="hierGWAS"; version="1.34.0"; sha256="140s7wvl1yl66yymq4vsiq0zb44nzjkip4x7l720lywmsj62v9zp"; depends=[fastcluster fmsb glmnet]; }; + hierinf = derive2 { name="hierinf"; version="1.22.0"; sha256="1x5piwk5y2z9nxfwnvcp60sqg9l0vi2q6rxhxr4r439c9vqgfm4w"; depends=[fmsb glmnet]; }; + hipathia = derive2 { name="hipathia"; version="3.4.0"; sha256="140ihldl1m7b249d184f717w9pycrsrx13gzjhamjvpdrn96hra4"; depends=[AnnotationHub coin DelayedArray dplyr ggplot2 ggpubr igraph limma matrixStats MetBrewer MultiAssayExperiment preprocessCore reshape2 S4Vectors servr SummarizedExperiment tibble visNetwork]; }; + hmdbQuery = derive2 { name="hmdbQuery"; version="1.24.0"; sha256="16mx6xhpxgajyglayzhgyv15m5mwggc141rkz4694l5923p3xzg8"; depends=[S4Vectors XML]; }; + hoodscanR = derive2 { name="hoodscanR"; version="1.2.0"; sha256="1dqmj5nisrndkldsa2qhy50a2bckvvyf96hcya6yqcvz6hb3w7d0"; depends=[circlize ComplexHeatmap ggplot2 knitr RANN Rcpp rlang rmarkdown scico SpatialExperiment SummarizedExperiment]; }; + hopach = derive2 { name="hopach"; version="2.64.0"; sha256="0i0p73arx8fyxq76plvpk61hpmwbmwm62ninkmx1dlbr2jzvzysx"; depends=[Biobase BiocGenerics cluster]; }; + hpar = derive2 { name="hpar"; version="1.46.0"; sha256="1qqa0p8k3h8pbbgfz9d1k08zml5i5r9iwi2xqqj1hg84n2saqkzp"; depends=[ExperimentHub]; }; + hummingbird = derive2 { name="hummingbird"; version="1.14.0"; sha256="1l8i7mhagysjxsnl4lhr31hi2v6xi4rxam5dhd24hrz8m867199p"; depends=[GenomicRanges IRanges Rcpp SummarizedExperiment]; }; + hypeR = derive2 { name="hypeR"; version="2.2.0"; sha256="0qsz1fklbwlzlm6fk1xr27gv7ynvqgpzd3s8657pv79q2f7wkljf"; depends=[BiocStyle dplyr ggforce ggplot2 htmltools httr igraph kableExtra magrittr msigdbr openxlsx purrr R6 reactable reshape2 rlang rmarkdown scales shiny stringr visNetwork]; }; + hyperdraw = derive2 { name="hyperdraw"; version="1.56.0"; sha256="104xwij9vq5gwq4ml7fnhsp4apcldbgxmhppwklg6zqdfixpmig5"; depends=[graph hypergraph Rgraphviz]; }; + hypergraph = derive2 { name="hypergraph"; version="1.76.0"; sha256="12g33rw1qy1ij32k87qrw04pak20p8z04mch9lxjy5yrj5k5x812"; depends=[graph]; }; + iASeq = derive2 { name="iASeq"; version="1.48.0"; sha256="0jaa4y13c6ra5axfw07g9pvmzybmyf3l2f6jya4cg9inqxvircv6"; depends=[]; }; + iBBiG = derive2 { name="iBBiG"; version="1.48.0"; sha256="1vysyhayxls2vpll48gskw82aizjhyqbf234j1say13kjnnn8fb3"; depends=[ade4 biclust xtable]; }; + iBMQ = derive2 { name="iBMQ"; version="1.44.0"; sha256="11i8fzf2i84x36xmq3dwndhvqgbrcj48p3ambn643r9pp27vmpdm"; depends=[Biobase ggplot2]; }; + iCARE = derive2 { name="iCARE"; version="1.32.0"; sha256="0m6cfcpviw1fxcg73zzjv1s8ynx47x2mfdpydsnkwfvc3r536xca"; depends=[gtools Hmisc plotrix]; }; + iCNV = derive2 { name="iCNV"; version="1.24.0"; sha256="08kqlpzkjd8m87n9yjdw0jmxdv7d90rh8s2rbmpywcs74qcrdq62"; depends=[CODEX data_table dplyr fields ggplot2 rlang tidyr truncnorm]; }; + iCOBRA = derive2 { name="iCOBRA"; version="1.32.0"; sha256="1m3awsz8h3gbi82an73kbxcsch2gl737zaanckl1vq2ghymqykrp"; depends=[dplyr DT ggplot2 limma markdown reshape2 rlang ROCR scales shiny shinyBS shinydashboard UpSetR]; }; + iCheck = derive2 { name="iCheck"; version="1.34.0"; sha256="1yz4f8cs8vna8rq3064md37mgidg4nzn2204zzbbpnwsx23mz1mc"; depends=[affy Biobase GeneSelectMMD gplots limma lmtest lumi MASS preprocessCore randomForest rgl scatterplot3d]; }; + iChip = derive2 { name="iChip"; version="1.58.0"; sha256="13qzd4f3iskf8g0l3d7bi22kp0mp5hpfidjvyxzi5zyx787vpaw2"; depends=[limma]; }; + iClusterPlus = derive2 { name="iClusterPlus"; version="1.40.0"; sha256="01rf4w2p1qw4hk9shsdaffyz9g91vffcn4qi1dllsrn3m8pyd1gm"; depends=[]; }; + iGC = derive2 { name="iGC"; version="1.34.0"; sha256="1xn04rv4p5aqvb4f696kfpcpyn4iqvryhgc84a8pk29yfx1hk38p"; depends=[data_table plyr]; }; + iNETgrate = derive2 { name="iNETgrate"; version="1.2.0"; sha256="1lsj5lwwfr4h1n1nlgnbncrgsy4mzhj5lzygcb691fkvk84ki09p"; depends=[BiocStyle caret GenomicRanges glmnet gplots Homo_sapiens igraph matrixStats minfi Pigengene Rfast SummarizedExperiment survival tidyr tidyselect WGCNA]; }; + iPAC = derive2 { name="iPAC"; version="1.48.0"; sha256="083lnwvc9b0w0gv21z2pcf4xvplz9alp6whv7ls1h8bgill4vc2a"; depends=[Biostrings gdata multtest pwalign scatterplot3d]; }; + iPath = derive2 { name="iPath"; version="1.10.0"; sha256="0dh57yif0wcapr54ba9ln45s9s9m52rzfgapz429i40dqbbc518v"; depends=[BiocParallel ggplot2 ggpubr matrixStats mclust Rcpp RcppArmadillo survival survminer]; }; + iSEE = derive2 { name="iSEE"; version="2.16.0"; sha256="0rkk8n0hwmbqlnmjcdcljbsqqmbgw4x5cyjl5fndvzjs6xls4fal"; depends=[BiocGenerics circlize colourpicker ComplexHeatmap DT ggplot2 ggrepel igraph listviewer mgcv rintrojs S4Vectors shiny shinyAce shinydashboard shinyjs shinyWidgets SingleCellExperiment SummarizedExperiment vipor viridisLite]; }; + iSEEde = derive2 { name="iSEEde"; version="1.2.0"; sha256="1fm7nav15kh2sn8lcgnywacsnv5z9mirv3vjvkk298141gdvnyiv"; depends=[DESeq2 edgeR iSEE S4Vectors shiny SummarizedExperiment]; }; + iSEEfier = derive2 { name="iSEEfier"; version="1.0.0"; sha256="0qg64qp2b3c5l11xa1hb8whvshv9xdi27da2j447jxa81r42xgyh"; depends=[BiocBaseUtils ggplot2 igraph iSEE iSEEu rlang SingleCellExperiment SummarizedExperiment visNetwork]; }; + iSEEhex = derive2 { name="iSEEhex"; version="1.6.0"; sha256="0lwifv4bpb8hp0y5d2fphzclf3c223x015bc7jj92kmpzl0hg41h"; depends=[ggplot2 hexbin iSEE shiny SummarizedExperiment]; }; + iSEEhub = derive2 { name="iSEEhub"; version="1.6.0"; sha256="0pwplhddy3nyszzbkjrv79kypc50pxr7jckfjdd0qy10v16314id"; depends=[AnnotationHub BiocManager DT ExperimentHub iSEE rintrojs S4Vectors shiny shinydashboard shinyjs SingleCellExperiment SummarizedExperiment]; }; + iSEEindex = derive2 { name="iSEEindex"; version="1.2.0"; sha256="0v8fww0rbldg6hdqyg9cfrsisahpwmc7q6pk156gz497av8gz250"; depends=[BiocFileCache DT iSEE paws_storage rintrojs shiny shinydashboard shinyjs SingleCellExperiment stringr SummarizedExperiment urltools]; }; + iSEEpathways = derive2 { name="iSEEpathways"; version="1.2.0"; sha256="168abrcfrrcnaz50lgkfqvap30xq63fjp61v365ar5zsh7qvys41"; depends=[ggplot2 iSEE S4Vectors shiny shinyWidgets SummarizedExperiment]; }; + iSEEu = derive2 { name="iSEEu"; version="1.16.0"; sha256="10l539zk0xha45h58j5y9sl0fmpr7vxy30n6xa54lbs3fs324jyv"; depends=[colourpicker DT ggplot2 IRanges iSEE iSEEhex S4Vectors shiny shinyAce SingleCellExperiment SummarizedExperiment]; }; + iSeq = derive2 { name="iSeq"; version="1.56.0"; sha256="1jjp852ajk37m9rp1j1c3jlng450az54dx8ayl0whjcsr2ljw7hn"; depends=[]; }; + iasva = derive2 { name="iasva"; version="1.22.0"; sha256="14p159ffi41lg56kjc2yafrxd8d0miqnavdnbspaal8l6r4qr10y"; depends=[BiocParallel cluster irlba SummarizedExperiment]; }; + ibh = derive2 { name="ibh"; version="1.52.0"; sha256="1xwcvj5zaax3z7c8nnlrmg1bj1wjrrpx5fg5zknhfkv96ycvbk5s"; depends=[simpIntLists]; }; + icetea = derive2 { name="icetea"; version="1.22.0"; sha256="0l204ak1br5xhlmp21v4qxc5fzrpg74ylaac63dvvhpkhphl51iz"; depends=[BiocGenerics BiocParallel Biostrings csaw DESeq2 edgeR GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges limma Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm6_ensGene VariantAnnotation]; }; + ideal = derive2 { name="ideal"; version="1.28.0"; sha256="1fmqawzlg7dzhb6imsq9wjb3i4qr91f6aj4n4akpkrky7djdn3p2"; depends=[AnnotationDbi base64enc BiocParallel DESeq2 dplyr DT GenomicRanges ggplot2 ggrepel GO_db goseq GOstats gplots heatmaply IHW IRanges knitr limma pcaExplorer pheatmap plotly rentrez rintrojs rlang rmarkdown S4Vectors shiny shinyAce shinyBS shinydashboard stringr SummarizedExperiment topGO UpSetR]; }; + idiogram = derive2 { name="idiogram"; version="1.80.0"; sha256="0hhgxsc4lk2lpi7ih1z72n4ly8kh8pj9j3w79x7nn0jha5krjv48"; depends=[annotate Biobase plotrix]; }; + idpr = derive2 { name="idpr"; version="1.14.0"; sha256="1g6g1265ncwlz4qz3w2v66jimx68pwmlzn8yw94pm242c2ikyn78"; depends=[Biostrings dplyr ggplot2 jsonlite magrittr plyr rlang]; }; + idr2d = derive2 { name="idr2d"; version="1.18.0"; sha256="1c1x9nazmapdk820i3k2b4b956zy5ym333y2fjxg9nqfsvq153mn"; depends=[dplyr futile_logger GenomeInfoDb GenomicRanges ggplot2 idr IRanges magrittr reticulate scales stringr]; }; + igvR = derive2 { name="igvR"; version="1.24.0"; sha256="0rkps3zj1zg8rksyrnp94xvasgrlvwnq4fqgkrhr8wn0jcqkpna1"; depends=[BiocGenerics BrowserViz GenomicAlignments GenomicRanges httpuv httr RColorBrewer rtracklayer VariantAnnotation]; }; + igvShiny = derive2 { name="igvShiny"; version="1.0.0"; sha256="0nb8cals6nw5l70yrnwq1pcfdc3m0w9ncsrdrd2zsm4ni2lpqjvx"; depends=[BiocGenerics checkmate futile_logger GenomeInfoDbData GenomicRanges htmlwidgets httr jsonlite randomcoloR RCurl shiny]; }; + illuminaio = derive2 { name="illuminaio"; version="0.46.0"; sha256="0l3n1plz5nvday0a1bm8173mikpfjbzrb1bp8yfvafy7lav4dsyv"; depends=[base64]; }; + imcRtools = derive2 { name="imcRtools"; version="1.10.0"; sha256="0wp5f0lrxi2f7kvdqqjl6gdhybcipppg3mr25r9zsfbaxf5d0160"; depends=[abind BiocNeighbors BiocParallel concaveman cytomapper data_table distances dplyr DT EBImage ggplot2 ggraph igraph magrittr MatrixGenerics pheatmap readr rlang RTriangle S4Vectors scuttle sf SingleCellExperiment SpatialExperiment stringr SummarizedExperiment tidygraph tidyselect viridis vroom]; }; + immunoClust = derive2 { name="immunoClust"; version="1.36.0"; sha256="00bshq0plfnh20117q9020gsyr65z1sfvmki8nbcz3ay6hq3rpm3"; depends=[flowCore lattice]; }; + immunotation = derive2 { name="immunotation"; version="1.12.0"; sha256="0g9yfm8kbcbfmb0xf1sqqv15h4ji0hya7p8j3czr2bc0gvmmka6q"; depends=[curl ggplot2 maps ontologyIndex readr rlang rvest stringr tidyr xml2]; }; + impute = derive2 { name="impute"; version="1.78.0"; sha256="1g0m9298srkhjnq3mc5rd7krr9y3cy74yvg9k0j7ypc9nmgcqabr"; depends=[]; }; + infercnv = derive2 { name="infercnv"; version="1.20.0"; sha256="1fi89fqzzb9n2c9jchkkgy3yq2fvisjcdavh9r455vmy0xqsyyyd"; depends=[ape argparse BiocGenerics caTools coda coin digest doParallel dplyr edgeR fastcluster fitdistrplus foreach futile_logger future ggplot2 gplots gridExtra HiddenMarkov igraph Matrix parallelDist phyclust RANN RColorBrewer reshape2 rjags Seurat SingleCellExperiment SummarizedExperiment tidyr]; }; + infinityFlow = derive2 { name="infinityFlow"; version="1.14.0"; sha256="112pnwg13wq9cw0lyl170pfby2kaaz2nm22gfwclf7hccnd9a46z"; depends=[Biobase flowCore generics gtools matlab pbapply png raster uwot xgboost]; }; + intansv = derive2 { name="intansv"; version="1.44.0"; sha256="1njvcyk4gdk2bxvs6zbz7dypcbmfismxpv8afxn02i2lz3ykdyzd"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; }; + interacCircos = derive2 { name="interacCircos"; version="1.14.0"; sha256="084136v9ghzgqgqv3k523416q2wl4qb6ix862fagjgwmkzdmr5s8"; depends=[htmlwidgets plyr RColorBrewer]; }; + interactiveDisplay = derive2 { name="interactiveDisplay"; version="1.42.0"; sha256="14k1j8bmpbrldx61fbvn20f7l2lc50bj9iy01a5jf0ddcbi27x5g"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; }; + interactiveDisplayBase = derive2 { name="interactiveDisplayBase"; version="1.42.0"; sha256="0ih9b6n81gr84vhmwcq49knrbmkwbh50gy5hrap654nicb3j3jzb"; depends=[BiocGenerics DT shiny]; }; + ipdDb = derive2 { name="ipdDb"; version="1.22.0"; sha256="10pk87w4yd6kgsbg79ci6csmk3izpxc8kwhn5f0jywmjdci7k3nq"; depends=[AnnotationDbi AnnotationHub assertthat Biostrings DBI GenomicRanges IRanges RSQLite]; }; + isobar = derive2 { name="isobar"; version="1.50.0"; sha256="0vqiw5bwk4mivj8b1a96qglqsmsfi4p6vd40x0rxafifb46i83h3"; depends=[Biobase biomaRt distr ggplot2 plyr]; }; + isomiRs = derive2 { name="isomiRs"; version="1.32.1"; sha256="020ij0byr9pnzxp083yyjscn3iwv7yq7v2zsdalqs4bzn6z7mzq8"; depends=[AnnotationDbi Biobase BiocGenerics broom cluster cowplot DEGreport DESeq2 dplyr GenomicRanges GGally ggplot2 gplots gridExtra gtools IRanges limma RColorBrewer readr reshape rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; + iterativeBMA = derive2 { name="iterativeBMA"; version="1.62.0"; sha256="1h2nz7pfagd4ncm64b7zfqawp3gd88kvz8920wmk5s732490x522"; depends=[Biobase BMA leaps]; }; + iterativeBMAsurv = derive2 { name="iterativeBMAsurv"; version="1.62.0"; sha256="1g0bg1cbk95pg1zf1xqk5dxii3cwfkwzx5ys1mzzab6b9i740las"; depends=[BMA leaps survival]; }; + ivygapSE = derive2 { name="ivygapSE"; version="1.26.0"; sha256="00i91a1r3xk7czcv5f7kxppgzjsvalxmzwyqj6mg5m3z4l77m17n"; depends=[ggplot2 hwriter plotly S4Vectors shiny SummarizedExperiment survival survminer UpSetR]; }; + karyoploteR = derive2 { name="karyoploteR"; version="1.30.0"; sha256="1g4pms5dcr4cdb47gr9kw3mc06v890b38zrsapd4x1cqhgfbgjyg"; depends=[AnnotationDbi bamsignals bezier biovizBase digest GenomeInfoDb GenomicFeatures GenomicRanges IRanges memoise regioneR Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; + katdetectr = derive2 { name="katdetectr"; version="1.6.0"; sha256="1hc3795f26cz1xml01zac83gmam15pvxd0pl2i9q4mardnkj9w7s"; depends=[Biobase BiocParallel BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 changepoint changepoint_np checkmate dplyr GenomeInfoDb GenomicRanges ggplot2 ggtext IRanges maftools plyranges Rdpack rlang S4Vectors scales tibble tidyr VariantAnnotation]; }; + kebabs = derive2 { name="kebabs"; version="1.38.0"; sha256="0v4sgxvyhi3lzr3jw82w00ffdg0w55vi78ia9i805kqy77sq0677"; depends=[apcluster Biostrings e1071 IRanges kernlab LiblineaR Matrix Rcpp S4Vectors XVector]; }; + keggorthology = derive2 { name="keggorthology"; version="2.56.0"; sha256="14sywfqfwbi3xanc202d07hb9yzahd94xqg9mx9djgin5b4islz3"; depends=[AnnotationDbi DBI graph hgu95av2_db]; }; + kissDE = derive2 { name="kissDE"; version="1.24.0"; sha256="1700shil37hsij9h4q3zr2cq3wav9bpbm74d7spbyv0l1fnl8fx9"; depends=[ade4 aods3 Biobase DESeq2 doParallel DSS DT factoextra foreach ggplot2 gplots matrixStats shiny shinycssloaders]; }; + knowYourCG = derive2 { name="knowYourCG"; version="1.0.0"; sha256="1nxg81p67d66bzy2fw6dsj02zh33pas02rai1prpsyjs7699bcqf"; depends=[dplyr GenomicRanges IRanges reshape2 rlang S4Vectors sesameData stringr]; }; + lapmix = derive2 { name="lapmix"; version="1.70.0"; sha256="1s2f28v21yjxi8rx08cdhd8g76wxm9wq48lq0c6kd7w4iklwwxd1"; depends=[Biobase]; }; + ldblock = derive2 { name="ldblock"; version="1.34.0"; sha256="1l4l35bpz4j1iliy9dj09qq8r4nimd9pcm0gm4g3sb4325z6cd5h"; depends=[BiocGenerics httr Matrix rlang]; }; + lefser = derive2 { name="lefser"; version="1.14.0"; sha256="1qi4q3vijys4q1gfnflvvz8ws3j6f65rpprpgmrkqgiwfn7dvi6g"; depends=[coin dplyr ggplot2 MASS S4Vectors SummarizedExperiment]; }; + lemur = derive2 { name="lemur"; version="1.2.0"; sha256="1hwnf8x9prqv96j66i5756510jviibbrchyizalhrlg8f427i5my"; depends=[BiocGenerics BiocNeighbors DelayedMatrixStats glmGamPoi harmony HDF5Array irlba limma Matrix MatrixGenerics matrixStats Rcpp RcppArmadillo rlang S4Vectors SingleCellExperiment SummarizedExperiment vctrs]; }; + les = derive2 { name="les"; version="1.54.0"; sha256="1dsdrdv06ab7rxpvmbgq1b6dhajjaw7zgvi9nshadm5gg28i60x3"; depends=[boot fdrtool gplots RColorBrewer]; }; + levi = derive2 { name="levi"; version="1.22.0"; sha256="0rknsfa5fbr4smxzj4p589sxxbypb2s1wvn33p9qj69mfcx7rmi3"; depends=[colorspace dplyr DT ggplot2 httr igraph knitr RColorBrewer Rcpp reshape2 rmarkdown shiny shinydashboard shinyjs testthat xml2]; }; + lfa = derive2 { name="lfa"; version="2.4.0"; sha256="1sbgr6h2kpfpzw3fkqd1075wrmbblb97pdywmvl8xv52vg0wqxz3"; depends=[corpcor RSpectra]; }; + limma = derive2 { name="limma"; version="3.60.2"; sha256="154fsg8vnks38f9phlbf15cpsf84p2gwygqgq4ayddfpxczzl159"; depends=[statmod]; }; + limmaGUI = derive2 { name="limmaGUI"; version="1.80.0"; sha256="12ryq8l3jkxi5znzhb9bqp53sba7rk2fszsxp1dkwmyrdl12l4ns"; depends=[limma R2HTML tkrplot xtable]; }; + limpca = derive2 { name="limpca"; version="1.0.0"; sha256="1id38g2s7g0shcqz37i03zhhypilny8z2dwf74anj8yj4d1isdfr"; depends=[doParallel dplyr ggplot2 ggrepel ggsci plyr reshape2 S4Vectors stringr SummarizedExperiment tibble tidyr tidyverse]; }; + lineagespot = derive2 { name="lineagespot"; version="1.8.0"; sha256="0rjf4liq6lr6i3b2a0cn22qc1xisscsvn7zi11vq8wq0ym15pj6c"; depends=[data_table httr MatrixGenerics stringr SummarizedExperiment VariantAnnotation]; }; + lionessR = derive2 { name="lionessR"; version="1.18.0"; sha256="1rv9daa45if6nm3yh1sbpnywmdpdi0kmga25pwzfjwv26f9kyd6q"; depends=[S4Vectors SummarizedExperiment]; }; + lipidr = derive2 { name="lipidr"; version="2.18.0"; sha256="037xy9ci3h0913df5iy5xnciz26zr9frqfpk8krbx7qfzk4d0rk2"; depends=[data_table dplyr fgsea forcats ggplot2 imputeLCMD limma magrittr rlang ropls S4Vectors SummarizedExperiment tidyr]; }; + lisaClust = derive2 { name="lisaClust"; version="1.12.1"; sha256="1yagv5c398kk95c8gyny7ldhh7mpf1yrqp65ijk0xgx5xpl3kcfd"; depends=[BiocGenerics BiocParallel class concaveman data_table dplyr ggplot2 pheatmap purrr S4Vectors SingleCellExperiment SpatialExperiment spatstat_explore spatstat_geom spatstat_random spicyR SummarizedExperiment tidyr]; }; + lmdme = derive2 { name="lmdme"; version="1.46.0"; sha256="19rplb4ik9jpxqghmglqhv42plbgz01i4pdw7pr063cdc2n3n18g"; depends=[limma pls stemHypoxia]; }; + loci2path = derive2 { name="loci2path"; version="1.24.0"; sha256="0igamscdyblh7ymj62qimwr48qfvpqld4ami0m3bnlzkkds6xm2n"; depends=[BiocParallel data_table GenomicRanges pheatmap RColorBrewer S4Vectors wordcloud]; }; + logicFS = derive2 { name="logicFS"; version="2.24.0"; sha256="1dbc8zwgixjjcdhy3fgln08c0kycrzbcd46vqjb4l479pdrj2r0l"; depends=[LogicReg mcbiopi survival]; }; + lpNet = derive2 { name="lpNet"; version="2.36.0"; sha256="14b7d942k15bjadakfvac8s9zhdhqw59pvpmal527rwm5z6avfvl"; depends=[KEGGgraph lpSolve]; }; + lpsymphony = derive2 { name="lpsymphony"; version="1.32.0"; sha256="1wcjmw655k389ph61v3gxjv7gk2q70h25zmdzvd4ggbxg8vh2mp1"; depends=[]; }; + lumi = derive2 { name="lumi"; version="2.56.0"; sha256="04r7dw00yvjrxs0h6mwh79lwp55f5v8s4pgmzcy2fnpb2cdslpzy"; depends=[affy annotate AnnotationDbi Biobase DBI GenomicFeatures GenomicRanges KernSmooth lattice MASS methylumi mgcv nleqslv preprocessCore RSQLite]; }; + lute = derive2 { name="lute"; version="1.0.0"; sha256="02hqwxmqld3fkvs7c7l8hz39wksxgbcnckgvkzgpaknsb2fdmml0"; depends=[Biobase BiocGenerics dplyr ggplot2 S4Vectors scran SingleCellExperiment SummarizedExperiment]; }; + m6Aboost = derive2 { name="m6Aboost"; version="1.10.0"; sha256="141jrx1ngwb70pl769ablzvxcd4f4dfgzi0jdsmqgmhb3kb3qvg2"; depends=[adabag Biostrings BSgenome dplyr ExperimentHub GenomicRanges IRanges rtracklayer S4Vectors]; }; + mBPCR = derive2 { name="mBPCR"; version="1.58.0"; sha256="182qbhzpj5h0qcyiph0k38bvlspc8i7g3bg27vkak5p8685hwrk8"; depends=[Biobase GWASTools oligoClasses]; }; + mCSEA = derive2 { name="mCSEA"; version="1.24.0"; sha256="11mx1250kvdmkriznzp0a05jvf9paizj7qsgq7wzlvgz9f6nfwyw"; depends=[biomaRt fgsea GenomicFeatures GenomicRanges ggplot2 Gviz Homo_sapiens IRanges limma mCSEAdata S4Vectors SummarizedExperiment]; }; + maCorrPlot = derive2 { name="maCorrPlot"; version="1.74.0"; sha256="0z4ilr1r9231f3h2zq6ac2spd3dcaa4j48hkih7nrqrgr9x1127d"; depends=[lattice]; }; + maPredictDSC = derive2 { name="maPredictDSC"; version="1.42.0"; sha256="015zp1ijl4sjqvrnaf0fzwzynvwjgphxba4q29m821hyvq1rjmx4"; depends=[affy AnnotationDbi caret class e1071 gcrma hgu133plus2_db limma LungCancerACvsSCCGEO MASS ROC ROCR]; }; + maSigPro = derive2 { name="maSigPro"; version="1.76.0"; sha256="1kb5xjg84jbri3ds5kvr30nypg2picz483nwwjamk8px6d3anmry"; depends=[Biobase MASS mclust venn]; }; + made4 = derive2 { name="made4"; version="1.78.0"; sha256="0x96lhkz0fwp3qis8k2lllmi520b887bz26jcq3zlk1kjhbg91a8"; depends=[ade4 Biobase gplots RColorBrewer scatterplot3d SummarizedExperiment]; }; + maftools = derive2 { name="maftools"; version="2.20.0"; sha256="0c2sf8l1wfgz3nh9ccm10y9wwh7rv55r09awavqlrr9glcbblp32"; depends=[data_table DNAcopy RColorBrewer Rhtslib survival zlibbioc]; }; + magpie = derive2 { name="magpie"; version="1.4.0"; sha256="1m5xnbcyhglkg843fhfvynlinag8vv8sxg1ghzpwi0q9ki65kq9d"; depends=[AnnotationDbi aod BiocParallel DESeq2 GenomicFeatures GenomicRanges IRanges Matrix matrixStats openxlsx RColorBrewer reshape2 Rsamtools rtracklayer S4Vectors TRESS]; }; + magrene = derive2 { name="magrene"; version="1.6.0"; sha256="1nqklrz4l2g062ipff6znzl9lm4ws69qplrdb0r5fsfahpb8s25z"; depends=[BiocParallel]; }; + makecdfenv = derive2 { name="makecdfenv"; version="1.80.0"; sha256="0c1ks5f2rc0mwbfji6iicvypbmm46mq8yckmdpwiyp22l7l05aqz"; depends=[affy affyio Biobase zlibbioc]; }; + mapscape = derive2 { name="mapscape"; version="1.28.0"; sha256="1xg3nm9r115fzykq8m31xcr7anaqyqm91qnsmib89zvf0hfgrlac"; depends=[base64enc htmlwidgets jsonlite stringr]; }; + mariner = derive2 { name="mariner"; version="1.4.0"; sha256="1ndinmzzzpy154jmndnqf5xj3wz35jjijszg88ga4j19w2cxmnfp"; depends=[abind assertthat BiocGenerics BiocManager BiocParallel colourvalues data_table dbscan DelayedArray GenomeInfoDb GenomicRanges glue HDF5Array InteractionSet IRanges magrittr plotgardener plyranges progress purrr RColorBrewer rhdf5 rlang S4Vectors strawr SummarizedExperiment]; }; + marr = derive2 { name="marr"; version="1.14.0"; sha256="1670fr6fcclrhgz6aqg0ph9iln0vjq3zgyp215na07ngwrzjw5nb"; depends=[dplyr ggplot2 magrittr Rcpp rlang S4Vectors SummarizedExperiment]; }; + marray = derive2 { name="marray"; version="1.82.0"; sha256="1h96aq92bad69ycrmrvxwdz8dg9rk44925gj83gxzqypw88j2x0y"; depends=[limma]; }; + martini = derive2 { name="martini"; version="1.24.0"; sha256="07d1cyj2ms8mnglqzqs45gz32pdsqkfac00a118fahs1rw8j408f"; depends=[igraph Matrix memoise Rcpp RcppEigen snpStats]; }; + maser = derive2 { name="maser"; version="1.22.0"; sha256="0w62dl65ysgcwixgmmb70qp6f85vhfnqjsww5snkjd48ypwx65ca"; depends=[BiocGenerics data_table dplyr DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges reshape2 rtracklayer]; }; + maskBAD = derive2 { name="maskBAD"; version="1.48.0"; sha256="198637aq9pjwx2p22iyy1nzy76pys2cmvfpdrghslh10l1b5pdjl"; depends=[affy gcrma]; }; + massiR = derive2 { name="massiR"; version="1.40.0"; sha256="169gpddm1q3brj49sm3sp4ifyby37i41ydxjizwpa9aml90zc0y8"; depends=[Biobase cluster diptest gplots]; }; + mastR = derive2 { name="mastR"; version="1.4.0"; sha256="1717hyil3x4c6jqv4zv6fwppwq1lc74kd8hg8z8yj8qqp92093f8"; depends=[AnnotationDbi Biobase dplyr edgeR ggplot2 ggpubr GSEABase limma Matrix msigdb org_Hs_eg_db patchwork SeuratObject SingleCellExperiment SummarizedExperiment tidyr]; }; + matchBox = derive2 { name="matchBox"; version="1.46.0"; sha256="015gdqbwdl02mwr7hcymdkz8pvbxjh4qv4agswh3d8qd3mmj04y6"; depends=[]; }; + matter = derive2 { name="matter"; version="2.6.2"; sha256="06ql73amrl5zy3ldm4ni3vwv65j1v9fy5s7a2pvwi31w4nwdly6h"; depends=[biglm BiocGenerics BiocParallel digest irlba Matrix ProtGenerics]; }; + mbQTL = derive2 { name="mbQTL"; version="1.4.0"; sha256="04ml4rv1hngr8lm9z9pcg7szb1cmla1m1vypwjk9bkkfy879ribf"; depends=[broom dplyr ggplot2 MatrixEQTL metagenomeSeq pheatmap readxl stringr tidyr]; }; + mbkmeans = derive2 { name="mbkmeans"; version="1.20.0"; sha256="0fnf6ymbcfchhlcbwpwlcq1jc3lfzh9f8mf76xfy7vrpwngds1fs"; depends=[beachmat benchmarkme BiocParallel ClusterR DelayedArray Matrix Rcpp RcppArmadillo Rhdf5lib S4Vectors SingleCellExperiment SummarizedExperiment]; }; + mdp = derive2 { name="mdp"; version="1.24.0"; sha256="08x2ghj5a91rdqq48xjsq4m22qk2ys92jhb6flaqzqgm1s6806lw"; depends=[ggplot2 gridExtra]; }; + mdqc = derive2 { name="mdqc"; version="1.66.0"; sha256="1frn6s43j6sbwnb5h2hykccvi7cwbasp8l37rc3nkxpc6szvsby6"; depends=[cluster MASS]; }; + megadepth = derive2 { name="megadepth"; version="1.14.0"; sha256="0394x1x81hgibvqb1dbrm8h3y72xfv9xi9fgqghjgnrw6farrkdk"; depends=[cmdfun dplyr fs GenomicRanges magrittr readr xfun]; }; + memes = derive2 { name="memes"; version="1.12.0"; sha256="03hrhydlgk57z9hzmwdgihlhsjyhhzw5vb5ql07ks169z15nix4h"; depends=[Biostrings cmdfun dplyr GenomicRanges ggplot2 ggseqlogo magrittr matrixStats patchwork processx purrr readr rlang tibble tidyr universalmotif usethis xml2]; }; + meshes = derive2 { name="meshes"; version="1.30.0"; sha256="0yc1drx7rbaxasj9p05hn4wa1nz0frymv7i9aw55ma59jjik8gi6"; depends=[AnnotationDbi AnnotationHub DOSE enrichplot GOSemSim MeSHDbi yulab_utils]; }; + meshr = derive2 { name="meshr"; version="2.10.0"; sha256="1cbxlypw937bafmzlz8v0g1bf16pmlqdc1jkisj8zmaj9xabbik9"; depends=[BiocGenerics BiocStyle Category fdrtool knitr markdown MeSHDbi rmarkdown RSQLite S4Vectors]; }; + messina = derive2 { name="messina"; version="1.40.0"; sha256="0xcc5y4zqz0hn7bm0lgyb8dlnhhq5nz1pghq53lvdmgr5zcp8yqz"; depends=[foreach ggplot2 plyr Rcpp survival]; }; + metaCCA = derive2 { name="metaCCA"; version="1.32.0"; sha256="1m35p9r3v2qzk3y1046p1n1j84rw6a1hsfsij58p4byi34hrfc1a"; depends=[]; }; + metaMS = derive2 { name="metaMS"; version="1.40.0"; sha256="0fj111vs9s1j754jhqzna89jnibiff6pahbn1vibh7gsx310ri0s"; depends=[BiocGenerics CAMERA Matrix robustbase xcms]; }; + metaSeq = derive2 { name="metaSeq"; version="1.44.0"; sha256="0n5s8kssvawcdi7sqhgpbrdwi39j22clgprcj9psd8i6g2n7iwc8"; depends=[NOISeq Rcpp snow]; }; + metabCombiner = derive2 { name="metabCombiner"; version="1.14.0"; sha256="0jp39qz7z3v7ndnxhc4lsjwf1mfhjq5nsg926s1x1i7w5x203fzd"; depends=[caret dplyr matrixStats mgcv rlang S4Vectors tidyr]; }; + metabinR = derive2 { name="metabinR"; version="1.6.0"; sha256="158lwd9l5yszlh28zsfn2ddmq6p8hlknvzy8k1spxmqdddqhp9zy"; depends=[rJava]; }; + metabolomicsWorkbenchR = derive2 { name="metabolomicsWorkbenchR"; version="1.14.0"; sha256="0rsrla3gyh0fpx49kg0p5c02nskcl5rv7xmdnbgxk5d1kbzdsrcr"; depends=[data_table httr jsonlite MultiAssayExperiment struct SummarizedExperiment]; }; + metabomxtr = derive2 { name="metabomxtr"; version="1.38.0"; sha256="1jfhz28q4bxib3k2wvdcqsrqj699bxy0lzqqi7m0xivrjp27jw9h"; depends=[Biobase BiocParallel Formula ggplot2 multtest optimx plyr]; }; + metagene2 = derive2 { name="metagene2"; version="1.20.0"; sha256="1j5jl0xczj2g03k0lwq9h5snv4kpwqga836dkshnmf789gn2pzy3"; depends=[BiocParallel data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr purrr R6 reshape2 Rsamtools rtracklayer]; }; + metagenomeSeq = derive2 { name="metagenomeSeq"; version="1.46.0"; sha256="0bjbiwbgs0lv0j6gjv5rhqhmqk0p7f80lfig4n24i4bqwkd2j26k"; depends=[Biobase foreach glmnet gplots limma Matrix matrixStats RColorBrewer Wrench]; }; + metahdep = derive2 { name="metahdep"; version="1.62.0"; sha256="1h888yl95xnr07ybz5hrfpslcc7xh0nggnl57lcw8ikqj8wgcnc2"; depends=[]; }; + metapod = derive2 { name="metapod"; version="1.12.0"; sha256="100wsg2y7069r7xk5bsk5n4n8dqvpbk297w5ishnijrvxhbs9f8n"; depends=[Rcpp]; }; + metapone = derive2 { name="metapone"; version="1.10.0"; sha256="0x5lrpf5554h2i521ikxgadpwj4233ib4n5p9qpass7y3z0kpxh7"; depends=[BiocParallel fdrtool fgsea fields ggplot2 ggrepel markdown]; }; + metaseqR2 = derive2 { name="metaseqR2"; version="1.16.0"; sha256="1rkaacb0jkfzhdd7q7v38by7wwmk4m4kfa01ky8yn2fady0sx3hm"; depends=[ABSSeq Biobase BiocGenerics BiocParallel biomaRt Biostrings corrplot DESeq2 DSS DT EDASeq edgeR genefilter GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gplots harmonicmeanp heatmaply htmltools httr IRanges jsonlite lattice limma locfit log4r magrittr MASS Matrix NBPSeq pander qvalue rmarkdown rmdformats Rsamtools RSQLite rtracklayer S4Vectors stringr SummarizedExperiment survcomp txdbmaker VennDiagram vsn yaml zoo]; }; + methInheritSim = derive2 { name="methInheritSim"; version="1.26.0"; sha256="0c94sbqa0aiskrl8rxyiyj38a5n4vw1l2b51c2v0ryvjqk0zg93n"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges methylKit msm S4Vectors]; }; + methimpute = derive2 { name="methimpute"; version="1.26.0"; sha256="1k9nasdfvrynvk2jsvxpbbp9zdqh516c41m654yfsdi5cl2y3jyd"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges ggplot2 IRanges minpack_lm Rcpp reshape2]; }; + methodical = derive2 { name="methodical"; version="1.0.0"; sha256="13m75hf5dq36l20idp9alcikhhqa2qy5jwfnpkv2yp1ra6c9pq7j"; depends=[BiocParallel Biostrings BSgenome cowplot data_table DelayedArray dplyr ExperimentHub foreach GenomeInfoDb GenomicRanges ggplot2 HDF5Array IRanges R_utils RcppRoll rhdf5 rtracklayer S4Vectors scales SummarizedExperiment tibble tidyr]; }; + methrix = derive2 { name="methrix"; version="1.18.0"; sha256="0976y3aswyv7dk60ix9vvcvd6dgc0sy8qnakq3pdrl505znxsshi"; depends=[BSgenome data_table DelayedArray DelayedMatrixStats GenomicRanges ggplot2 HDF5Array IRanges matrixStats rtracklayer S4Vectors SummarizedExperiment]; }; + methyLImp2 = derive2 { name="methyLImp2"; version="1.0.0"; sha256="1f86951l7gjqj48hxdm6ppc7bp84dm9fnlh0xhhl12fbdp2id94m"; depends=[BiocParallel ChAMPdata corpcor SummarizedExperiment]; }; + methylCC = derive2 { name="methylCC"; version="1.18.0"; sha256="16i4yjx36pdbxf9vqnnr568lqcnql1pw3f5f1hlnq66kaai9hx34"; depends=[Biobase bsseq bumphunter dplyr FlowSorted_Blood_450k genefilter GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IRanges magrittr minfi plyranges quadprog S4Vectors]; }; + methylGSA = derive2 { name="methylGSA"; version="1.22.0"; sha256="0myii2c782my1lmqziaxdlrsfxgh194n58m1ydaqbxnhgkwvh10s"; depends=[AnnotationDbi BiocParallel clusterProfiler ggplot2 GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 missMethyl org_Hs_eg_db reactome_db RobustRankAggreg shiny stringr]; }; + methylInheritance = derive2 { name="methylInheritance"; version="1.28.0"; sha256="1pqd9ydgm071pa5lld1mn39yymkaghzx931ghlkshhh9dsrjqhg4"; depends=[BiocParallel GenomicRanges ggplot2 gridExtra IRanges methylKit rebus S4Vectors]; }; + methylKit = derive2 { name="methylKit"; version="1.30.0"; sha256="000dvi63cjikjbq3q83hlspd7y62rpswzg6hs5z1z1pj6a8rifdj"; depends=[data_table emdbook fastseg GenomeInfoDb GenomicRanges gtools IRanges KernSmooth limma mclust mgcv qvalue R_utils Rcpp Rhtslib Rsamtools rtracklayer S4Vectors zlibbioc]; }; + methylMnM = derive2 { name="methylMnM"; version="1.42.0"; sha256="0f1mc3v1zr55irlqfxkp7s7cv2c1crwr60hj4ff1ld14ds91q9pr"; depends=[edgeR statmod]; }; + methylPipe = derive2 { name="methylPipe"; version="1.38.0"; sha256="1v2qp5rp19d80aai8i5y32b62kynkkdkp3hqfvsk82ckwxvk2k60"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; }; + methylSig = derive2 { name="methylSig"; version="1.16.0"; sha256="03ghyx1xj2d06fj5kckrw810x92s8ndsq3wpj1kcjkf1v22vr0ln"; depends=[bsseq DelayedArray DelayedMatrixStats DSS GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + methylclock = derive2 { name="methylclock"; version="1.10.0"; sha256="193ck7a501804424yqvg2c8zixzj56p3d8468sdisx577hhshhhm"; depends=[Biobase devtools dplyr dynamicTreeCut ExperimentHub ggplot2 ggpmisc ggpubr gridExtra impute methylclockData minfi PerformanceAnalytics planet preprocessCore quadprog Rcpp RPMM tibble tidyr tidyverse]; }; + methylscaper = derive2 { name="methylscaper"; version="1.12.0"; sha256="19xpagmx9rn840acbm2cj3vkvhjzr1rslsjmjgvgcm4fip1yrskp"; depends=[BiocParallel Biostrings data_table pwalign Rfast seqinr seriation shiny shinyFiles shinyjs SummarizedExperiment]; }; + methylumi = derive2 { name="methylumi"; version="2.50.0"; sha256="1ms3w43yvy810mr6dml9hqp3kw5jlpr9153kd62gvhjsgikaj3ja"; depends=[annotate AnnotationDbi Biobase BiocGenerics FDb_InfiniumMethylation_hg19 genefilter GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; }; + mfa = derive2 { name="mfa"; version="1.26.0"; sha256="1vqmpxsl9dfq0h9cirip578crfnqxpabbwpzlglcm0qqwymh6ilr"; depends=[Biobase coda dplyr ggmcmc ggplot2 magrittr MCMCglmm MCMCpack Rcpp tibble]; }; + mgsa = derive2 { name="mgsa"; version="1.52.0"; sha256="00404pglk2f7hq8pfb3i8zigwzal74m0kk39by2rigyigdcq4sq9"; depends=[gplots]; }; + miQC = derive2 { name="miQC"; version="1.12.0"; sha256="04f7jza631y04mhy23yvipd88rywgpqw5jm9ff54hhfhmscdaczn"; depends=[flexmix ggplot2 SingleCellExperiment]; }; + miRLAB = derive2 { name="miRLAB"; version="1.34.0"; sha256="1r18s6d94csqqbkjis5dh5q4rbw1qvj61x8wmzw7jgyvrsyd5jqc"; depends=[Category ctc dplyr energy entropy glmnet GOstats gplots Hmisc httr impute InvariantCausalPrediction limma org_Hs_eg_db pcalg RCurl stringr SummarizedExperiment TCGAbiolinks]; }; + miRNAmeConverter = derive2 { name="miRNAmeConverter"; version="1.32.0"; sha256="0sqar3llyj10kmix9vb870nra5n735m9897qyf0zic9n21gmmbsp"; depends=[AnnotationDbi DBI miRBaseVersions_db reshape2]; }; + miRNApath = derive2 { name="miRNApath"; version="1.64.0"; sha256="0zhgh9qls59kn6gd977gawvwh0pqdwwasla1gbvbiakhw3i1jw9r"; depends=[]; }; + miRNAtap = derive2 { name="miRNAtap"; version="1.38.0"; sha256="07sff3h9hidw5xr11fx6n4ngajvsvbz4a1gkavd32wh6j8jccpyx"; depends=[AnnotationDbi DBI plyr RSQLite sqldf stringr]; }; + miRSM = derive2 { name="miRSM"; version="2.0.0"; sha256="0wxwz00fsv8jf291zlfjim89vhsbqwlc9klq0szzl1p7msrs7vga"; depends=[BiBitR BicARE biclust Biobase clusterProfiler dbscan DOSE dynamicTreeCut energy fabia flashClust GFA GSEABase iBBiG igraph isa2 linkcomm MatrixCorrelation MCL mclust NMF org_Hs_eg_db PMA ppclust Rcpp ReactomePA rqubic s4vd SOMbrero subspace SummarizedExperiment WGCNA]; }; + miRcomp = derive2 { name="miRcomp"; version="1.34.0"; sha256="1gm8s0mprb5ybc1hb92w1z84qrj4vzfizd0ws4ppzj9k6fb12nn9"; depends=[Biobase KernSmooth miRcompData]; }; + mia = derive2 { name="mia"; version="1.12.0"; sha256="1wn2lb7hn4zqqcs2jwavpsbk5kw8d78kxg2yv4jjpikpdz7haa2i"; depends=[ape BiocGenerics BiocParallel Biostrings bluster DECIPHER decontam DelayedArray DelayedMatrixStats DirichletMultinomial dplyr IRanges MASS MatrixGenerics MultiAssayExperiment rlang S4Vectors scater scuttle SingleCellExperiment SummarizedExperiment tibble tidyr TreeSummarizedExperiment vegan]; }; + miaSim = derive2 { name="miaSim"; version="1.10.0"; sha256="1grlkynbjkfndx8j44yd6sfr3yzy0fwmakjw4mg8flllqs9yqnmw"; depends=[deSolve MatrixGenerics poweRlaw S4Vectors SummarizedExperiment TreeSummarizedExperiment]; }; + miaViz = derive2 { name="miaViz"; version="1.12.0"; sha256="1dpvqvh9sg6visf4bbjd9x4wag2dzj2b5mylbxbqwcm8lic7gy03"; depends=[ape BiocGenerics BiocParallel DelayedArray DirichletMultinomial dplyr ggnewscale ggplot2 ggraph ggrepel ggtree mia purrr rlang S4Vectors scater SingleCellExperiment SummarizedExperiment tibble tidygraph tidyr tidytree TreeSummarizedExperiment viridis]; }; + microRNA = derive2 { name="microRNA"; version="1.62.0"; sha256="0jw6g5y9pgvwh10fxpr55nkq8yf6p079kvsx986sgz78y0kkm6zh"; depends=[Biostrings]; }; + microSTASIS = derive2 { name="microSTASIS"; version="1.4.0"; sha256="1gf37nqcif6blpwrlq694gl78l2g1alx13wjdxay6qfg2iaf2dln"; depends=[BiocParallel ggplot2 ggside rlang stringr TreeSummarizedExperiment]; }; + microbiome = derive2 { name="microbiome"; version="1.26.0"; sha256="1azxfydcrxi46j6lykspzchwcj0dpghjia7vfb2bppz9gh8nvk37"; depends=[Biostrings compositions dplyr ggplot2 phyloseq reshape2 Rtsne scales tibble tidyr vegan]; }; + microbiomeDASim = derive2 { name="microbiomeDASim"; version="1.18.0"; sha256="123viwwyc4yjwkc1l7r9als4bvi2sb7yxmyfidqwamw8f2vwsfcz"; depends=[Biobase ggplot2 MASS Matrix metagenomeSeq mvtnorm pbapply phyloseq tmvtnorm]; }; + microbiomeExplorer = derive2 { name="microbiomeExplorer"; version="1.14.0"; sha256="0p15wp3n2v74rfsmap0331b3xkswfyaq8a4h2xrcn3v60m5qfmzq"; depends=[Biobase biomformat broom car DESeq2 dplyr DT forcats heatmaply knitr limma lubridate magrittr matrixStats metagenomeSeq plotly purrr RColorBrewer readr reshape2 rlang rmarkdown shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr tibble tidyr vegan]; }; + microbiomeMarker = derive2 { name="microbiomeMarker"; version="1.10.0"; sha256="07w77cm7fjkqnc1rkj9dj6nashpkwbq43nwp6bsq5wp8k4y26gjn"; depends=[ALDEx2 ANCOMBC Biobase BiocGenerics BiocParallel biomformat Biostrings caret coin ComplexHeatmap DESeq2 dplyr edgeR ggplot2 ggsignif ggtree IRanges limma magrittr MASS metagenomeSeq multtest patchwork phyloseq plotROC pROC purrr rlang S4Vectors tibble tidyr tidytree vegan yaml]; }; + midasHLA = derive2 { name="midasHLA"; version="1.12.0"; sha256="0d7zpv88mfs8bgym72ljbr0wammnppc5q0pcf5970z2zapxqmczy"; depends=[assertthat broom dplyr formattable HardyWeinberg kableExtra knitr magrittr MultiAssayExperiment qdapTools rlang S4Vectors stringi SummarizedExperiment tibble]; }; + miloR = derive2 { name="miloR"; version="2.0.0"; sha256="1cb5iw90h6raflgmypd2wc8y4mbsv9g8alshh30k1kjm8vlsw92y"; depends=[BiocGenerics BiocNeighbors BiocParallel BiocSingular cowplot dplyr edgeR ggbeeswarm ggplot2 ggraph ggrepel gtools igraph irlba limma Matrix MatrixGenerics matrixStats numDeriv patchwork RColorBrewer Rcpp RcppArmadillo S4Vectors SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; }; + mimager = derive2 { name="mimager"; version="1.28.0"; sha256="0n535az50yvdvbjwy0rixy4lnlc0psb454xdzqp6rh718jh5yqrf"; depends=[affy affyPLM Biobase BiocGenerics DBI gtable oligo oligoClasses preprocessCore S4Vectors scales]; }; + mina = derive2 { name="mina"; version="1.12.0"; sha256="0fkc6cf267fcz7gqaf2grvd9dl1azvymsahszkb6w0rp289nbbn6"; depends=[apcluster biganalytics bigmemory foreach ggplot2 Hmisc MCL parallelDist plyr Rcpp RcppArmadillo RcppParallel reshape2 RSpectra stringr]; }; + minet = derive2 { name="minet"; version="3.62.0"; sha256="1627gqqk8v3sx5kgm7z3wkimbz7dpf37ljrmvwbd4z6ag2yiirbj"; depends=[infotheo]; }; + minfi = derive2 { name="minfi"; version="1.50.0"; sha256="1hk44wddcygh4j7jmj1b0p40hf5qdy1m78x14j19h7z9aq4azdij"; depends=[beanplot Biobase BiocGenerics BiocParallel Biostrings bumphunter data_table DelayedArray DelayedMatrixStats genefilter GenomeInfoDb GenomicRanges GEOquery HDF5Array illuminaio IRanges lattice limma MASS mclust nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; }; + mirIntegrator = derive2 { name="mirIntegrator"; version="1.34.0"; sha256="1saj71y2h3zczq16ypvmvy17z95klxawiifrlrxw3b61pnf7lpn0"; depends=[AnnotationDbi ggplot2 graph org_Hs_eg_db Rgraphviz ROntoTools]; }; + mirTarRnaSeq = derive2 { name="mirTarRnaSeq"; version="1.12.0"; sha256="1wn27pnmax2ay13a6mms6wrhskvqlwmg45jifbfhna1d5ly18rqh"; depends=[assertthat caTools corrplot data_table dplyr ggplot2 MASS pheatmap pscl purrr R_utils reshape2 viridis]; }; + missMethyl = derive2 { name="missMethyl"; version="1.38.0"; sha256="0fnqa7v6lgld4pdqnvgdzly73aj4a4cn8sgszicxsyn1damxsjiw"; depends=[AnnotationDbi BiasedUrn Biobase BiocGenerics GenomicRanges GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest IRanges limma methylumi minfi org_Hs_eg_db ruv S4Vectors statmod stringr SummarizedExperiment]; }; + missRows = derive2 { name="missRows"; version="1.24.0"; sha256="0p51nnfxhz5lqxm4vbqhxczaa774g13sh65czj1kkrrzp1g65wm5"; depends=[ggplot2 gtools MultiAssayExperiment plyr S4Vectors]; }; + mistyR = derive2 { name="mistyR"; version="1.12.0"; sha256="0w0ij222749pv89y0gq9c01cgsasw1lb3g0bx3sf6j62gdlf1gdp"; depends=[assertthat caret deldir digest distances dplyr filelock furrr ggplot2 purrr R_utils ranger readr ridge rlang rlist stringr tibble tidyr tidyselect withr]; }; + mitch = derive2 { name="mitch"; version="1.16.0"; sha256="1x65vxjbbd7vswv9lpa0fx5l1m629n0iayb54s3xhidn3xylizsb"; depends=[beeswarm echarts4r GGally ggplot2 gplots gridExtra kableExtra knitr MASS plyr reshape2 rmarkdown]; }; + mitoClone2 = derive2 { name="mitoClone2"; version="1.10.0"; sha256="1vmbyraranbfywk1mmr2arbzw8fsxkyqh5nkzd2w92vpahp7vn2d"; depends=[deepSNV GenomicRanges ggplot2 pheatmap reshape2 Rhtslib S4Vectors]; }; + mixOmics = derive2 { name="mixOmics"; version="6.28.0"; sha256="03pdg2hz4wnyigqakb9098ak9ww8fhwypzn006hfad0s042p9wvj"; depends=[BiocParallel corpcor dplyr ellipse ggplot2 ggrepel gridExtra igraph lattice MASS matrixStats rARPACK RColorBrewer reshape2 tidyr]; }; + mnem = derive2 { name="mnem"; version="1.20.0"; sha256="0i93fnqpf8m90bkyvgzccj2x4phg9k1wb6k8fs04qsid0b9ksnpd"; depends=[cluster data_table e1071 flexclust ggplot2 graph lattice Linnorm matrixStats naturalsort Rcpp RcppEigen Rgraphviz snowfall tsne wesanderson]; }; + moanin = derive2 { name="moanin"; version="1.12.0"; sha256="15agfggzbdgpx974yvixh8c8mv8wklg6zfzzr7ywpv2cixxazhwq"; depends=[ClusterR edgeR limma MASS matrixStats NMI reshape2 S4Vectors SummarizedExperiment topGO viridis zoo]; }; + mobileRNA = derive2 { name="mobileRNA"; version="1.0.11"; sha256="10p37qr8wz6chh44fh1nri2db5qqghbbzbpjm02safxdx7h88081"; depends=[BiocGenerics bioseq Biostrings data_table DESeq2 dplyr edgeR GenomeInfoDb GenomicRanges ggplot2 ggrepel IRanges pheatmap progress RColorBrewer reticulate rlang rtracklayer S4Vectors scales SimDesign SummarizedExperiment tidyr tidyselect]; }; + mogsa = derive2 { name="mogsa"; version="1.38.0"; sha256="01hr97j5i20qwpck6nfr79wx31y7igz1wzr2m1zdivggb4jg94x7"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; }; + monaLisa = derive2 { name="monaLisa"; version="1.10.0"; sha256="0znan1yh35mxrjn6x5xz2g5pl0dhh0nklyx8rbsn09hn1khb8y5l"; depends=[BiocGenerics BiocParallel Biostrings BSgenome circlize ComplexHeatmap GenomeInfoDb GenomicRanges glmnet IRanges RSQLite S4Vectors stabs SummarizedExperiment TFBSTools vioplot XVector]; }; + monocle = derive2 { name="monocle"; version="2.32.0"; sha256="0b09mf9fph0mb0zing0prc757d223858q9lj4j3kfpfjpd3jffai"; depends=[Biobase BiocGenerics biocViews cluster combinat DDRTree dplyr fastICA ggplot2 HSMMSingleCell igraph irlba leidenbase limma MASS Matrix matrixStats pheatmap plyr proxy RANN Rcpp reshape2 Rtsne slam stringr tibble VGAM viridis]; }; + mosaics = derive2 { name="mosaics"; version="2.42.0"; sha256="000bwz1z8nwzgyaz69z6krr4ksggpsq48ni9rzl25m1bc27skldj"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges lattice MASS Rcpp Rsamtools S4Vectors]; }; + mosbi = derive2 { name="mosbi"; version="1.10.0"; sha256="0kvwsiwqvsphgjcflr1zjhp91k867bqg6x6gj72kl6x9an3rxpri"; depends=[akmbiclust BH biclust fabia igraph isa2 QUBIC RColorBrewer Rcpp RcppParallel xml2]; }; + mosdef = derive2 { name="mosdef"; version="1.0.0"; sha256="14zv9mgiqcj2s34hg8wfdij1gss324rkq42clg8f3ancambj74vp"; depends=[AnnotationDbi clusterProfiler DESeq2 DT ggforce ggplot2 ggrepel GO_db goseq htmltools RColorBrewer rlang S4Vectors scales SummarizedExperiment topGO]; }; + motifStack = derive2 { name="motifStack"; version="1.48.0"; sha256="15v4z1a0kg4ic411aprzc9b7i2l6c456sfj3jaxy95anw3j3iskj"; depends=[ade4 Biostrings ggplot2 htmlwidgets TFBSTools XML]; }; + motifTestR = derive2 { name="motifTestR"; version="1.0.3"; sha256="19m8y69cd1x79cqwgwf6360mv7kn0a2gv3lphy2i60p6vlq99s8j"; depends=[Biostrings GenomeInfoDb GenomicRanges ggplot2 harmonicmeanp IRanges matrixStats patchwork rlang S4Vectors universalmotif]; }; + motifbreakR = derive2 { name="motifbreakR"; version="2.18.0"; sha256="1mxs83l8yrbcx353h0wpc0lczn1jc0y5vg59y9g9dabk41csib47"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges Gviz IRanges matrixStats MotifDb motifStack pwalign rtracklayer S4Vectors stringr SummarizedExperiment TFMPvalue VariantAnnotation]; }; + motifcounter = derive2 { name="motifcounter"; version="1.28.0"; sha256="1h6wbqn2xbj5ggx0sgp09cvrkcafq7i70mbskg2y9l9nryb38g2z"; depends=[Biostrings]; }; + motifmatchr = derive2 { name="motifmatchr"; version="1.26.0"; sha256="1wpvdg5x51cbzpqa4s2s0zl9h7fsrsp87mxxlhxs65zx6yyfj2xl"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment TFBSTools]; }; + mpra = derive2 { name="mpra"; version="1.26.0"; sha256="181v4ickndbng6bhvvzyn92kq61izjhx27hkbsryqgnf0xlx1c33"; depends=[BiocGenerics limma S4Vectors scales statmod SummarizedExperiment]; }; + msImpute = derive2 { name="msImpute"; version="1.14.0"; sha256="1qjkaa5ksd67izfw5jgg1l843jn6d7h0asp99sd340wbqcdfnyix"; depends=[data_table dplyr FNN limma matrixStats mvtnorm pdist reticulate scran softImpute tidyr]; }; + msPurity = derive2 { name="msPurity"; version="1.30.1"; sha256="03h492l2x8isd1h4zmr5k6xykswimqfcxfgd67xpjjr0anrc8yl0"; depends=[DBI dbplyr doSNOW dplyr fastcluster foreach ggplot2 magrittr mzR plyr Rcpp reshape2 RSQLite stringr]; }; + msa = derive2 { name="msa"; version="1.36.0"; sha256="05i6pp10nn4icl51rx3b48s861hnd1yx72d933fphm6a5082zxms"; depends=[BiocGenerics Biostrings IRanges Rcpp S4Vectors]; }; + msgbsR = derive2 { name="msgbsR"; version="1.28.0"; sha256="06nbcb1nkci83kjl9l05d3vyfz4w21y0s51wg344bzjra1ycb9gl"; depends=[BSgenome easyRNASeq edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr R_utils Rsamtools S4Vectors SummarizedExperiment]; }; + mslp = derive2 { name="mslp"; version="1.6.0"; sha256="0qafwb6rp0r0h5iazj13q703yvld5s1si93vn4gcxk66pgg9fm3w"; depends=[data_table doRNG fmsb foreach magrittr org_Hs_eg_db pROC randomForest RankProd]; }; + msmsEDA = derive2 { name="msmsEDA"; version="1.42.0"; sha256="1fzw36181rw7z62qggq7j22qhq8zrblpmv8qkqlfg140ywvwv08a"; depends=[gplots MASS MSnbase RColorBrewer]; }; + msmsTests = derive2 { name="msmsTests"; version="1.42.0"; sha256="0fadwss9z4bfgkhrrqv322j8x40l5cl4ib85057h4fn03qdijqhq"; depends=[edgeR msmsEDA MSnbase qvalue]; }; + msqrob2 = derive2 { name="msqrob2"; version="1.12.0"; sha256="1mg4a9mjvzj4y6jw5qpz53wg1h7z6a5l2b20ibp0wr67rns5xkix"; depends=[BiocParallel codetools limma lme4 MASS Matrix MultiAssayExperiment purrr QFeatures SummarizedExperiment]; }; + multiClust = derive2 { name="multiClust"; version="1.34.0"; sha256="1md8zli6fhcb5ccy6yksl6c62vfqc2ifznxvpvzch2j1h2fswx84"; depends=[amap cluster ctc dendextend mclust survival]; }; + multiGSEA = derive2 { name="multiGSEA"; version="1.14.0"; sha256="14mn8r3n1r9mrpng3b6hl20mmwxz3ns122qnx59lsja7danl9w0w"; depends=[AnnotationDbi dplyr fgsea graphite magrittr metaboliteIDmapping metap rappdirs rlang]; }; + multiHiCcompare = derive2 { name="multiHiCcompare"; version="1.22.0"; sha256="0h5b8yaqxy0gpm1kndv0dyz6pvacdy7vh3mbdkbz04q4ng1jnk12"; depends=[aggregation BiocParallel data_table dplyr edgeR GenomeInfoDb GenomeInfoDbData GenomicRanges HiCcompare pbapply pheatmap qqman]; }; + multiMiR = derive2 { name="multiMiR"; version="1.26.0"; sha256="0pzifw4b61v1wrfy6lsb5i4xxpmhl3g6sml09akfdy0skfx5lam8"; depends=[AnnotationDbi BiocGenerics dplyr purrr RCurl tibble XML]; }; + multiWGCNA = derive2 { name="multiWGCNA"; version="1.2.0"; sha256="1y2rwwy5q2ak861hg8nm5f13rmf2b9dmhsmjwvxc75nzdjg9yqcz"; depends=[cowplot data_table dcanr dplyr flashClust ggalluvial ggplot2 ggrepel igraph patchwork readr reshape2 scales stringr SummarizedExperiment WGCNA]; }; + multicrispr = derive2 { name="multicrispr"; version="1.14.0"; sha256="1625pqby6b0k67vn1h90j5899q5rhc815b64nywnvxlaia7hjvpm"; depends=[BiocGenerics Biostrings BSgenome CRISPRseek data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 karyoploteR magrittr plyranges Rbowtie reticulate rtracklayer stringi tidyr tidyselect]; }; + multiscan = derive2 { name="multiscan"; version="1.64.0"; sha256="0cp2fy4hl5cdgrii9nl53cd22h87hxsdixhpdi9is914v9s42rkr"; depends=[Biobase]; }; + multistateQTL = derive2 { name="multistateQTL"; version="1.0.0"; sha256="1y983wj9awz29rv2fg8ryyindza8gjn54dn775p00zqs7qjnny3m"; depends=[circlize collapse ComplexHeatmap data_table dplyr fitdistrplus ggplot2 mashr matrixStats QTLExperiment S4Vectors SummarizedExperiment tidyr viridis]; }; + multtest = derive2 { name="multtest"; version="2.60.0"; sha256="04dv5rcqwpv0im7j3hvcj8hjybgs4a384zgnjyqbcipcicd2rjz4"; depends=[Biobase BiocGenerics MASS survival]; }; + mumosa = derive2 { name="mumosa"; version="1.12.0"; sha256="1r3i19q5i2pfs8xaag4qcb64hxwkz49msbvv454n5cb2zp1nafvd"; depends=[batchelor beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats igraph IRanges Matrix metapod S4Vectors ScaledMatrix scran scuttle SingleCellExperiment SummarizedExperiment uwot]; }; + muscat = derive2 { name="muscat"; version="1.18.0"; sha256="1gafcq3p693f28gz3p8hk8mlxd9zja95h8953sr56n7krfffy1gi"; depends=[BiocParallel blme ComplexHeatmap data_table DESeq2 dplyr edgeR ggplot2 glmmTMB limma lme4 lmerTest Matrix matrixStats progress purrr S4Vectors scales scater sctransform scuttle SingleCellExperiment SummarizedExperiment variancePartition viridis]; }; + muscle = derive2 { name="muscle"; version="3.46.0"; sha256="1jx71gzjd9jnr1xa0c0zzjg5a8qhf8czrh4mwbvnclr7g1l21cdq"; depends=[Biostrings]; }; + musicatk = derive2 { name="musicatk"; version="1.14.0"; sha256="1mp8c42pk5pl4ymvz0vjvgh0vq10kk67844vvspbhwpfdmsabr2b"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 BSgenome_Mmusculus_UCSC_mm9 cluster ComplexHeatmap data_table decompTumor2Sig dplyr factoextra GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel gridExtra gtools IRanges maftools magrittr MASS Matrix matrixTests MCMCprecision NMF philentropy plotly rlang S4Vectors shiny stringi stringr SummarizedExperiment tibble tidyr tidyverse topicmodels TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene uwot VariantAnnotation]; }; + mygene = derive2 { name="mygene"; version="1.40.0"; sha256="0ybvabgdjm63yvvkpkldqddvdcfsncr25rnsw17kbdachar29shj"; depends=[GenomicFeatures Hmisc httr jsonlite plyr S4Vectors sqldf txdbmaker]; }; + myvariant = derive2 { name="myvariant"; version="1.34.0"; sha256="1f82x3vahbsccvyg5gvi34llanzscpvp0pbqhm1ki9frx9hqwysz"; depends=[GenomeInfoDb Hmisc httr jsonlite magrittr plyr S4Vectors VariantAnnotation]; }; + mzID = derive2 { name="mzID"; version="1.42.0"; sha256="0kh9swzh3hvi6qi64cgr13f22s1mgvz2rid5psb1gy4l3biwadj5"; depends=[doParallel foreach iterators plyr ProtGenerics XML]; }; + mzR = derive2 { name="mzR"; version="2.38.0"; sha256="02dz23xns9ryz98nip1w68h9q5ckxpyl1zvzklsp4j7p9z2400dk"; depends=[Biobase BiocGenerics ncdf4 ProtGenerics Rcpp Rhdf5lib]; }; + ncGTW = derive2 { name="ncGTW"; version="1.18.0"; sha256="1x9q4c3xkz984nz33bbh753181qx655zkl46i00h7a9khnab9cdv"; depends=[BiocParallel Rcpp xcms]; }; + ncRNAtools = derive2 { name="ncRNAtools"; version="1.14.0"; sha256="151s12kg88x4nymzvpzwlfil7rvrbaa99agfxzz03r8dyjnqrqlq"; depends=[GenomicRanges ggplot2 httr IRanges S4Vectors xml2]; }; + ncdfFlow = derive2 { name="ncdfFlow"; version="2.50.0"; sha256="1mbq3190nxlzhfb58i7s2f5f9fngda1icnihmyplagh64savlpcn"; depends=[BH Biobase BiocGenerics cpp11 flowCore Rhdf5lib zlibbioc]; }; + ndexr = derive2 { name="ndexr"; version="1.26.0"; sha256="1jl7z4a1rdsivc774k15v3q40isgp1ly3lsmgflfkq7jsx62xl5j"; depends=[httr jsonlite plyr RCX tidyr]; }; + nearBynding = derive2 { name="nearBynding"; version="1.14.0"; sha256="0ni6mipdbwzc0gi8mws1d1b8ylj0pjlvi81kv9r3pm93psr67pj3"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicRanges ggplot2 gplots magrittr matrixStats plyranges R_utils rlang Rsamtools rtracklayer S4Vectors transport TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + nempi = derive2 { name="nempi"; version="1.12.0"; sha256="069b7kmpz38s7240ac8iw8m80w62lrly01khfl8b3kikhlr82jcq"; depends=[e1071 epiNEM matrixStats mnem naturalsort nnet randomForest]; }; + netDx = derive2 { name="netDx"; version="1.16.0"; sha256="00ghcj5hzb06pi9aj2rdnasyqgqnvr9qjb0m6b0476yv2mx5x24k"; depends=[bigmemory BiocFileCache combinat doParallel foreach GenomeInfoDb GenomicRanges ggplot2 glmnet httr igraph IRanges MultiAssayExperiment plotrix pracma rappdirs RColorBrewer reshape2 ROCR Rtsne S4Vectors]; }; + netSmooth = derive2 { name="netSmooth"; version="1.24.0"; sha256="0nry64lvqwwq672c6callfjfa0y14igvqpvrvfs2hm0qj8qmg2q8"; depends=[cluster clusterExperiment data_table DelayedArray entropy HDF5Array Matrix scater SingleCellExperiment SummarizedExperiment]; }; + netZooR = derive2 { name="netZooR"; version="1.8.0"; sha256="0z1wi0csnpjz70q5pl5wmdfgqnq66yk9gysxxid8rmkagqxvbg73"; depends=[AnnotationDbi assertthat Biobase data_table doParallel dplyr foreach ggdendro ggplot2 GO_db GOstats gplots igraph MASS Matrix matrixcalc matrixStats nnet org_Hs_eg_db pandaR penalized RCy3 reshape reshape2 reticulate STRINGdb tidyr vegan viridisLite yarn]; }; + netboost = derive2 { name="netboost"; version="2.12.0"; sha256="0xirmys108qhxg7073vm90463a7qs6z557516ff1yczhldaq4psy"; depends=[BiocStyle colorspace dynamicTreeCut impute R_utils Rcpp RcppParallel WGCNA]; }; + nethet = derive2 { name="nethet"; version="1.36.0"; sha256="1mr42pdm2sjpbmiiwjpqd0pvbnc5imlgmg14swc2pp66dl60g7b3"; depends=[CompQuadForm GeneNet ggm ggplot2 glasso glmnet GSA huge ICSNP limma mclust multtest mvtnorm network]; }; + netprioR = derive2 { name="netprioR"; version="1.30.0"; sha256="0kgsgjc2q4wvdwbqfx79ql85k6xc60165zair7nwc89wn07rnswy"; depends=[doParallel dplyr foreach ggplot2 gridExtra Matrix pROC sparseMVN]; }; + netresponse = derive2 { name="netresponse"; version="1.64.0"; sha256="13lynfqsbv8cp6hd452bky4mkf029jwvryx8mzdcx15r4hwsqh5r"; depends=[BiocStyle ggplot2 graph igraph mclust minet plyr qvalue RColorBrewer reshape2 Rgraphviz rmarkdown]; }; + ngsReports = derive2 { name="ngsReports"; version="2.6.0"; sha256="11k4fbwy6shkb3z9np7wnnhbjpka3ymm8ja8dnw1jpdc3l1jx537"; depends=[BiocGenerics Biostrings checkmate dplyr forcats ggdendro ggplot2 jsonlite lifecycle lubridate patchwork plotly reshape2 rlang rmarkdown scales stringr tibble tidyr tidyselect zoo]; }; + nipalsMCIA = derive2 { name="nipalsMCIA"; version="1.2.0"; sha256="0r14hmglxlrwryc6qwn20vfrmy5k2pk7l73d3fz5bmfja06ms6n5"; depends=[ComplexHeatmap dplyr fgsea ggplot2 MultiAssayExperiment pracma rlang RSpectra scales SummarizedExperiment]; }; + nnNorm = derive2 { name="nnNorm"; version="2.68.0"; sha256="1r3klap7yazz73jh7dja1wlgg9ladfw1aaljirbiq1dvlb1q1i8f"; depends=[marray nnet]; }; + nnSVG = derive2 { name="nnSVG"; version="1.8.0"; sha256="00346z7i5hgljylv00l5pcmj3y769mqnhac0f4l7jhiww3xswfbs"; depends=[BiocParallel BRISC Matrix matrixStats SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + normalize450K = derive2 { name="normalize450K"; version="1.32.0"; sha256="0iavswwgv0qhnwlf99nxrpmswbd5m9ihi7i68gby07hmsl5gci2a"; depends=[Biobase illuminaio quadprog]; }; + normr = derive2 { name="normr"; version="1.30.0"; sha256="1lkh4a6c499g4wicj4khkyhz361k4q0aydk4gc122vn4877z14c6"; depends=[bamsignals GenomeInfoDb GenomicRanges IRanges qvalue Rcpp rtracklayer]; }; + npGSEA = derive2 { name="npGSEA"; version="1.40.0"; sha256="1d9q7jy6axmh62xs4m1lxfh8j7vwq4k995l28hcfwh7qk38k4gqr"; depends=[Biobase BiocGenerics GSEABase]; }; + nuCpos = derive2 { name="nuCpos"; version="1.22.0"; sha256="03qv4p5mvwbnm2grfnrszphv3c0k2lwja5cbq27cv6il7bnz8m0m"; depends=[]; }; + nucleR = derive2 { name="nucleR"; version="2.36.0"; sha256="1gbn4rpgil579xkrwd78wc7h6h0f8j1kjz0vvlijy63i6g380wfk"; depends=[Biobase BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr Rsamtools S4Vectors ShortRead]; }; + nucleoSim = derive2 { name="nucleoSim"; version="1.32.0"; sha256="0f64601jm3bvcdpls3d5njpparkb5h5v6zvhb1jf46fdvyg4xcss"; depends=[IRanges S4Vectors]; }; + nullranges = derive2 { name="nullranges"; version="1.10.0"; sha256="0a20aqqja5nkp39v7mxjnc98in63zhl00mnhsm952ja7v1l2xfsw"; depends=[data_table GenomeInfoDb GenomicRanges ggplot2 ggridges InteractionSet IRanges plyranges progress rlang S4Vectors scales]; }; + occugene = derive2 { name="occugene"; version="1.64.0"; sha256="01dgpbz3w5bbbhiz67fripxw1pwdd1iinnywvm9xgzjkdhr3g18y"; depends=[]; }; + octad = derive2 { name="octad"; version="1.6.0"; sha256="1nlad40c9mzs74zrc82smmmyknw4dr88c6zm0ywm62v0wb8l22n7"; depends=[AnnotationHub Biobase data_table DESeq2 dplyr EDASeq edgeR ExperimentHub foreach ggplot2 GSVA htmlwidgets httr limma magrittr octad_db plotly qpdf reshape2 Rfast rhdf5 RUVSeq S4Vectors]; }; + odseq = derive2 { name="odseq"; version="1.32.0"; sha256="03bhlarifh5r13ii7a5kd6gj9w0zdgjz9p89pj0lhgx2lglh2nm8"; depends=[kebabs mclust msa]; }; + oligo = derive2 { name="oligo"; version="1.68.2"; sha256="0ch6b4rg5v6fj0fgniqiigx1gnnqgwji90bxqngllman388bx867"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; }; + oligoClasses = derive2 { name="oligoClasses"; version="1.66.0"; sha256="15icfcmpwrnjpyahc4v168fpcbsml6x7h4drmsyh9l8d1284yb4n"; depends=[affyio Biobase BiocGenerics BiocManager Biostrings DBI ff foreach GenomicRanges IRanges RSQLite S4Vectors SummarizedExperiment]; }; + omada = derive2 { name="omada"; version="1.6.0"; sha256="1by6im4frl724yif9pjgcmp016hahj5xj35h1zqa4k5g8nw54f9s"; depends=[clValid diceR dplyr fpc genieclust ggplot2 glmnet kernlab pdfCluster Rcpp reshape]; }; + omicRexposome = derive2 { name="omicRexposome"; version="1.26.0"; sha256="0p3x3pp3337nvmqqssrbfh6zn2fp260ss8wjc2c90b0gr4c4h6wc"; depends=[Biobase ggplot2 ggrepel gridExtra isva limma MultiDataSet omicade4 PMA rexposome SmartSVA stringr SummarizedExperiment sva]; }; + omicade4 = derive2 { name="omicade4"; version="1.44.0"; sha256="18gp8qpmnbc5yjqyvvwvmrdybvm6zddc0r8bfglxz5wg4a91h4wk"; depends=[ade4 Biobase made4]; }; + omicplotR = derive2 { name="omicplotR"; version="1.24.0"; sha256="1zb4xik2rvznbigfh42k97mlfc4ls997cyv4ixd34qp0z3929djc"; depends=[ALDEx2 compositions DT jsonlite knitr matrixStats rmarkdown shiny vegan zCompositions]; }; + omicsPrint = derive2 { name="omicsPrint"; version="1.24.0"; sha256="0b5mccw1vpcw1i38lcy6cjr6im0iw17a3z8vwfs7f2z7nj72p8cf"; depends=[MASS matrixStats MultiAssayExperiment RaggedExperiment SummarizedExperiment]; }; + omicsViewer = derive2 { name="omicsViewer"; version="1.8.0"; sha256="0ij7slf4y708gdw06nmm2w7p3svcadvc9s44rzkgjb66is4h375g"; depends=[beeswarm Biobase curl drc DT fastmatch fgsea flatxml ggplot2 ggseqlogo htmlwidgets httr Matrix matrixStats networkD3 openxlsx plotly psych RColorBrewer reshape2 ROCR RSQLite S4Vectors shiny shinybusy shinycssloaders shinyjs shinythemes shinyWidgets stringr SummarizedExperiment survival survminer]; }; + ompBAM = derive2 { name="ompBAM"; version="1.8.0"; sha256="12r57wgqszwlm4agfbs0gfakhh87y8jpaalv2rq38nif479hpmyz"; depends=[Rcpp zlibbioc]; }; + oncomix = derive2 { name="oncomix"; version="1.26.0"; sha256="01ap90pyj3xdnhryiywa57pl0d8lj4q7qxxvf8ahhbr0a2hy8py0"; depends=[ggplot2 ggrepel mclust RColorBrewer SummarizedExperiment]; }; + oncoscanR = derive2 { name="oncoscanR"; version="1.6.0"; sha256="1n5rcnbb06pl3b27wkzzmz0l7g3hgfjpi7v7anbhscr2i1hy46b9"; depends=[GenomicRanges IRanges magrittr readr S4Vectors]; }; + onlineFDR = derive2 { name="onlineFDR"; version="2.12.0"; sha256="1sivrkb21dmb7wgdxd0q3nmjlvaqrh21c20s4lq8azn685frlznh"; depends=[progress Rcpp RcppProgress]; }; + ontoProc = derive2 { name="ontoProc"; version="1.26.0"; sha256="0v4dv6rjrivrx3npjycrlqyivbpksikkj6l8h772sa5hfnwmf943"; depends=[AnnotationHub Biobase BiocFileCache dplyr DT graph httr igraph magrittr ontologyIndex ontologyPlot R_utils reticulate Rgraphviz S4Vectors shiny SummarizedExperiment]; }; + openCyto = derive2 { name="openCyto"; version="2.16.1"; sha256="13ndjvm3l5pl1jgv7bqp78didqq3rx6br4p1ncqqp68mm048f2ll"; depends=[BH Biobase BiocGenerics cpp11 data_table flowClust flowCore flowViz flowWorkspace graph ncdfFlow RBGL RColorBrewer]; }; + openPrimeR = derive2 { name="openPrimeR"; version="1.26.0"; sha256="1wcwg0hpnmfzzbxsqggmgim15f4zky0xx3ynyypykyh1c5i3f4yi"; depends=[ape BiocGenerics Biostrings DECIPHER digest dplyr foreach GenomicRanges ggplot2 Hmisc IRanges lpSolveAPI magrittr openxlsx plyr pwalign RColorBrewer reshape2 S4Vectors scales seqinr stringdist stringr uniqtag XML]; }; + openPrimeRui = derive2 { name="openPrimeRui"; version="1.26.0"; sha256="0w00ya6xb70am000hybrxgcq8bpd950w36n01v4l0pfmfcvqd9fa"; depends=[DT openPrimeR rmarkdown shiny shinyBS shinyjs]; }; + oposSOM = derive2 { name="oposSOM"; version="2.22.0"; sha256="1i6jkhnb7b420zacxxiv4c0il1n7yrvg5v4qnd465d1s2wifwndn"; depends=[ape Biobase biomaRt fastICA fdrtool graph igraph pixmap png Rcpp RcppParallel RCurl scatterplot3d tsne XML]; }; + oppar = derive2 { name="oppar"; version="1.32.0"; sha256="1bdcddyw1m51x6fs928j8qmcfdkw21hi7xvgih97nyddnnl5ad5x"; depends=[Biobase GSEABase GSVA]; }; + oppti = derive2 { name="oppti"; version="1.18.0"; sha256="1lmjvncp8h3p9vb4979v5spw2yp7w2mj4w60b728njhp9cxh8k6g"; depends=[devtools ggplot2 knitr limma parallelDist pheatmap RColorBrewer reshape]; }; + optimalFlow = derive2 { name="optimalFlow"; version="1.16.0"; sha256="1b7a7xca1fb7732hwzcgz79p5pp6xsy0z5az5inv6g8z7a2wpngn"; depends=[dbscan doParallel dplyr ellipse flowMeans foreach optimalFlowData randomForest Rfast rgl rlang robustbase transport]; }; + orthogene = derive2 { name="orthogene"; version="1.10.0"; sha256="12rf9xjziziw7r02assnpa4ncryyqkfibj3bhbrq8vp7ygvbn64a"; depends=[babelgene data_table DelayedArray dplyr ggplot2 ggpubr ggtree gprofiler2 grr homologene jsonlite Matrix patchwork repmis]; }; + orthos = derive2 { name="orthos"; version="1.2.0"; sha256="0y5q9dmn6qwq8psgclwzca3bpfiyi7xh325hxj328h3fis1sm9xb"; depends=[AnnotationHub basilisk BiocParallel colorspace cowplot DelayedArray dplyr ExperimentHub ggplot2 ggpubr ggrepel ggsci HDF5Array keras orthosData plyr reticulate rlang S4Vectors SummarizedExperiment tensorflow tidyr]; }; + pRoloc = derive2 { name="pRoloc"; version="1.44.0"; sha256="0g3wlr8f5lhsz9yqs0fx2x1f07y5mxcknq0790l0hirmhlj0vvzr"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class coda dendextend e1071 FNN ggplot2 gtools hexbin kernlab knitr LaplacesDemon lattice MASS mclust mixtools MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; }; + pRolocGUI = derive2 { name="pRolocGUI"; version="2.14.0"; sha256="0lxnvh2hx7zayfmdfiqhlwp3gmpx0bsz3ds67zalhvf1xmn2cn88"; depends=[Biobase BiocGenerics colorspace colourpicker dplyr DT ggplot2 MSnbase pRoloc scales shiny shinydashboard shinydashboardPlus shinyhelper shinyjs shinyWidgets]; }; + packFinder = derive2 { name="packFinder"; version="1.16.0"; sha256="0y8sw0vyfry6vfn4k9w81m9s4a98bhc5h2a4nvy666qjganhfm8i"; depends=[ape Biostrings GenomicRanges IRanges kmer S4Vectors]; }; + padma = derive2 { name="padma"; version="1.14.0"; sha256="1b5pjjd7nn6b64b0cj0alqgbp9782vf33b4m7kz9dvzacsp9n2l0"; depends=[FactoMineR MultiAssayExperiment S4Vectors SummarizedExperiment]; }; + pageRank = derive2 { name="pageRank"; version="1.14.0"; sha256="0d7mgxssyc7bbcjhhrlj4y7v4xgw16y499c0k6wcrh3y4f24xwna"; depends=[GenomicRanges igraph motifmatchr]; }; + paircompviz = derive2 { name="paircompviz"; version="1.42.0"; sha256="13znncas7s3ihjvv401fjbsg80iliv4afqw9w4jyazz4vdwgp400"; depends=[Rgraphviz]; }; + pairedGSEA = derive2 { name="pairedGSEA"; version="1.4.0"; sha256="181x2r7af4243b2jmsc71gi8jlq80d4gzkcprr0dk0sis9bh1pqj"; depends=[aggregation BiocParallel DESeq2 DEXSeq fgsea ggplot2 limma S4Vectors SummarizedExperiment sva]; }; + pairkat = derive2 { name="pairkat"; version="1.10.0"; sha256="1rxwf8nlmc18h6zi95v4xhs5hqaygpba15wsc06msslzr905s6id"; depends=[CompQuadForm data_table igraph KEGGREST magrittr SummarizedExperiment tibble]; }; + pandaR = derive2 { name="pandaR"; version="1.36.0"; sha256="1cgy9sx5nk94d43baxsm25lh64fmmmznxd832r2wnj6a7p07bbj2"; depends=[Biobase BiocGenerics ggplot2 hexbin igraph matrixStats plyr reshape RUnit]; }; + panelcn_mops = derive2 { name="panelcn.mops"; version="1.26.0"; sha256="1fmb1zixg909nqdf34z2aq0llzzsrf4pd73pc8xyachivyx73p4a"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; + panp = derive2 { name="panp"; version="1.74.0"; sha256="0w5hbjpdwy6g3x38c64r29106s1smyakzpm1qb50f6g8mf99lsvy"; depends=[affy Biobase]; }; + pareg = derive2 { name="pareg"; version="1.8.0"; sha256="1b9vvn1ppw1vbfmkzkbd6b01pkqnsknbrjv1js983dpjv23x6xlb"; depends=[basilisk devtools doFuture doRNG DOSE dplyr foreach future ggplot2 ggraph ggrepel glue hms igraph keras logger magrittr Matrix nloptr progress proxy purrr reticulate rlang stringr tensorflow tfprobability tibble tidygraph tidyr]; }; + parglms = derive2 { name="parglms"; version="1.36.0"; sha256="1b63nkd50pn1mgr8l0svi3h8rplb5g50a2xvkxa7j26w6ss8302v"; depends=[BatchJobs BiocGenerics doParallel foreach]; }; + parody = derive2 { name="parody"; version="1.62.0"; sha256="0k2gc8p9dk7j21n6hxdqjna09m6cggx47spkmxkqvwqm97mwqzrp"; depends=[]; }; + partCNV = derive2 { name="partCNV"; version="1.2.0"; sha256="0f632ih6fy46923a4cf7njkgaqwkmgbwz74djbd2awsnk02afbbw"; depends=[AnnotationHub data_table depmixS4 GenomicRanges magrittr Seurat SingleCellExperiment]; }; + pathRender = derive2 { name="pathRender"; version="1.72.0"; sha256="0dcds0agwphriqc0d8rw7yycqvxzhv7jj4xs2lvwhzwqrkxicpf1"; depends=[AnnotationDbi cMAP graph RColorBrewer Rgraphviz]; }; + pathifier = derive2 { name="pathifier"; version="1.42.0"; sha256="1m21713zj4i5iygrj0ygc5zwcrw6038hb486l6c5nvykhzc5w64p"; depends=[princurve R_oo]; }; + pathlinkR = derive2 { name="pathlinkR"; version="1.0.0"; sha256="19i840an94hpyqxz4c4piqy322ynxzf48cxbmxvf5jylxdqjnzf2"; depends=[circlize clusterProfiler ComplexHeatmap dplyr ggforce ggplot2 ggpubr ggraph ggrepel igraph purrr sigora stringr tibble tidygraph tidyr vegan visNetwork]; }; + pathview = derive2 { name="pathview"; version="1.44.0"; sha256="1papw23dhhkqmm864dc3xm028xm0ywc6sjcm7xk93f2j7yj65x0v"; depends=[AnnotationDbi graph KEGGgraph KEGGREST org_Hs_eg_db png Rgraphviz XML]; }; + pathwayPCA = derive2 { name="pathwayPCA"; version="1.20.0"; sha256="055jqyzi6lq056ibdyzxy5mzcs5f93im2fbiz73a33bqndpc9s5i"; depends=[lars survival]; }; + paxtoolsr = derive2 { name="paxtoolsr"; version="1.38.0"; sha256="0m3r8ynqkhksgj0d3si3wcnk5a801g1qklin8zm81cr1nlfx67gw"; depends=[httr igraph jsonlite plyr R_utils rappdirs readr rJava rjson XML]; }; + pcaExplorer = derive2 { name="pcaExplorer"; version="2.30.0"; sha256="1szl2gyhw55ad4phcb7qn14amjb6xg65l3p4hnjzp6rda2cy9437"; depends=[AnnotationDbi base64enc biomaRt DESeq2 DT genefilter GenomicRanges ggplot2 ggrepel GO_db GOstats heatmaply IRanges knitr limma NMF pheatmap plotly plyr rmarkdown S4Vectors scales shiny shinyAce shinyBS shinydashboard SummarizedExperiment threejs tidyr topGO]; }; + pcaMethods = derive2 { name="pcaMethods"; version="1.96.0"; sha256="1hrq0xmpr1l95hyi6ls9r86ahwf2rcbvr8m7cpg6ra0gsfyn4mpi"; depends=[Biobase BiocGenerics MASS Rcpp]; }; + pcxn = derive2 { name="pcxn"; version="2.26.0"; sha256="13gahdsvz7ss3chcvqmdyrnw31rcgiplqg7awrn930drwljlimqk"; depends=[pcxnData pheatmap]; }; + pdInfoBuilder = derive2 { name="pdInfoBuilder"; version="1.68.0"; sha256="1dcd0lscvywy5y5xfhfmn39n2iypjr4fjldfgmx8qa80b1d0xcbi"; depends=[affxparser Biobase BiocGenerics Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + peakPantheR = derive2 { name="peakPantheR"; version="1.18.0"; sha256="0rr8kmk6d4m7aipmz2pi2rzwxhxc600bk9r24fdgsw4kbh17fman"; depends=[bslib doParallel DT foreach ggplot2 gridExtra lubridate minpack_lm MSnbase mzR pracma scales shiny shinycssloaders stringr svglite XML]; }; + peco = derive2 { name="peco"; version="1.16.0"; sha256="1w3yf77lk5whdhicq6rzp61cpivvkc0jj5wsasjxaqvl7lf1k6fs"; depends=[assertthat circular conicfit doParallel foreach genlasso scater SingleCellExperiment SummarizedExperiment]; }; + pengls = derive2 { name="pengls"; version="1.10.0"; sha256="0i3v91a3y5gyns5pnjnx7kmfwbp66kllj4gynzfjlgpf57y4qhk4"; depends=[BiocParallel glmnet nlme]; }; + pepStat = derive2 { name="pepStat"; version="1.38.0"; sha256="1k4nf5jlpcf7bgrv08mgd575gkp08sw9w7nzab7idizdz4pvqvj4"; depends=[Biobase data_table fields GenomicRanges ggplot2 IRanges limma plyr]; }; + pepXMLTab = derive2 { name="pepXMLTab"; version="1.38.0"; sha256="1y4c4cfc8s87rdmr2z2n3p3k6mann9ywragdl0v4rizss5rj35dl"; depends=[XML]; }; + periodicDNA = derive2 { name="periodicDNA"; version="1.14.0"; sha256="1fx7kvgl9znzpz6i33zl6019m0r4jcwsvsycjwhqaz8g3b5k4z8q"; depends=[BiocParallel Biostrings BSgenome cowplot GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr rtracklayer S4Vectors zoo]; }; + pfamAnalyzeR = derive2 { name="pfamAnalyzeR"; version="1.4.0"; sha256="06bp5nghgrj8qyzqp1v869vck1j10093r9dp67w0kav4x4srkyyl"; depends=[dplyr magrittr readr stringr tibble]; }; + pgca = derive2 { name="pgca"; version="1.28.0"; sha256="0yj7vcx3qyy3296k1lzi3qfgwcf0h08x784ygh5wkfa4y23azj0b"; depends=[]; }; + pgxRpi = derive2 { name="pgxRpi"; version="1.0.1"; sha256="063xyx9i6k06klb8zpq64ln77lyadz6m6h86krk4mfxfbn214v9b"; depends=[attempt circlize dplyr GenomicRanges ggplot2 httr lubridate plyr S4Vectors SummarizedExperiment survival survminer]; }; + phantasus = derive2 { name="phantasus"; version="1.24.0"; sha256="0gw7d8n4nb3rjari1zrdqqhdz0ca0mgw40yr56r3x3gsyqpjlzxa"; depends=[AnnotationDbi assertthat Biobase ccaPP config curl data_table DESeq2 edgeR fgsea fs GEOquery ggplot2 gtable htmltools httpuv httr jsonlite limma Matrix opencpu phantasusLite pheatmap protolite rhdf5 rhdf5client Rook scales stringr svglite XML yaml]; }; + phantasusLite = derive2 { name="phantasusLite"; version="1.2.0"; sha256="1adr0z6gg72dhcfa98b5sfs1lsyypbs882wckzjgmjv16v56na4r"; depends=[Biobase data_table httr rhdf5client stringr]; }; + phenoTest = derive2 { name="phenoTest"; version="1.52.0"; sha256="1l5r19gksrbqsdl9v8r2f4hrsbsxbkircbp3rxiis5x6y17ca9hy"; depends=[annotate AnnotationDbi Biobase biomaRt BMA Category ellipse genefilter ggplot2 gplots GSEABase Heatplus hgu133a_db Hmisc hopach limma mgcv survival xtable]; }; + phenomis = derive2 { name="phenomis"; version="1.6.0"; sha256="0d6kc034lbbsyvr30p0a1c3nrpa39kkpwjqbkdvm6cwvfyiaf3iy"; depends=[Biobase biodb biodbChebi data_table futile_logger ggplot2 ggrepel htmlwidgets igraph limma MultiAssayExperiment MultiDataSet plotly PMCMRplus ranger RColorBrewer ropls SummarizedExperiment tibble tidyr VennDiagram]; }; + phenopath = derive2 { name="phenopath"; version="1.28.0"; sha256="073v6sxf3k10257npbmxxh6bvdjwnvk3zh1zq2yvm9jzg2n34i99"; depends=[dplyr ggplot2 Rcpp SummarizedExperiment tibble tidyr]; }; + philr = derive2 { name="philr"; version="1.30.0"; sha256="1j6lq7rprvqs8azj13l9qd5xylcmqgw6687cqn0rbsdhgiaqlh5h"; depends=[ape ggplot2 ggtree phangorn tidyr]; }; + phosphonormalizer = derive2 { name="phosphonormalizer"; version="1.28.0"; sha256="1l58dv15fffmji7yzw96gg6221b895kaxjpxphx6ixl203m5gz03"; depends=[matrixStats plyr]; }; + phyloseq = derive2 { name="phyloseq"; version="1.48.0"; sha256="0a8q4wcqcxs7933bxg9bg03ps6hnybvcpqmlpz1pjy3affzghcbi"; depends=[ade4 ape Biobase BiocGenerics biomformat Biostrings cluster data_table foreach ggplot2 igraph multtest plyr reshape2 scales vegan]; }; + piano = derive2 { name="piano"; version="2.20.0"; sha256="0v168wkwxzh70h2c08ad4dzlgklbgvx1fzwrzw2mqq0fyczj0diw"; depends=[Biobase BiocGenerics DT fgsea gplots htmlwidgets igraph marray relations scales shiny shinydashboard shinyjs visNetwork]; }; + pickgene = derive2 { name="pickgene"; version="1.76.0"; sha256="1a13p8n75bnz3dyxvp83vpxp23i85dq22mwn9mada9i8dixy49mc"; depends=[MASS]; }; + pipeComp = derive2 { name="pipeComp"; version="1.14.0"; sha256="1wq7b5f5hdxg2q6av782dm2gmzzdx58ss7ns9vizyxli3k926p5n"; depends=[aricode BiocParallel circlize clue cluster ComplexHeatmap cowplot dplyr ggplot2 intrinsicDimension knitr Matrix matrixStats randomcoloR RColorBrewer reshape2 Rtsne S4Vectors scales scater scran Seurat SingleCellExperiment SummarizedExperiment uwot viridisLite]; }; + pipeFrame = derive2 { name="pipeFrame"; version="1.20.0"; sha256="12wi520dylsjmf3vzwsdqqfqgcz5g4znfs2n5sd9b4805smc8k8l"; depends=[Biostrings BSgenome digest GenomeInfoDb magrittr rmarkdown visNetwork]; }; + planet = derive2 { name="planet"; version="1.12.0"; sha256="0qfvddm5hnhplhni8xwwivc87n4gvvwxslxhrmvx10zsppn536g4"; depends=[dplyr magrittr tibble]; }; + planttfhunter = derive2 { name="planttfhunter"; version="1.4.0"; sha256="1sz19ryxdlsm30by416bi6icnkcd5znim31x9w7f4x762fv6ffvp"; depends=[Biostrings SummarizedExperiment]; }; + plasmut = derive2 { name="plasmut"; version="1.2.0"; sha256="0k8mjvs8vwgx98m19zk2ckyz5maf72px68kr0wniclmkapls3l0a"; depends=[dplyr tibble]; }; + plgem = derive2 { name="plgem"; version="1.76.0"; sha256="0my4jpxw3xy9n40cqvdaz6ay7gpwshn2iqxr43knrk0ckpyxx2cr"; depends=[Biobase MASS]; }; + plier = derive2 { name="plier"; version="1.74.0"; sha256="0svk8p4h212l3igfmrxhqi90xz74jicr5y780556k9bcj3jwqg5c"; depends=[affy Biobase]; }; + plotGrouper = derive2 { name="plotGrouper"; version="1.22.0"; sha256="169786jrqbcf8qhysar22cb5am2zh6j7w601k9784b4ywhxh3ac0"; depends=[colourpicker dplyr egg ggplot2 ggpubr gridExtra gtable Hmisc magrittr readr readxl rlang scales shiny shinythemes stringr tibble tidyr]; }; + plotgardener = derive2 { name="plotgardener"; version="1.10.1"; sha256="1pcjc4an5pspafb9pvmia73g8cdp6n2paz2m952p1xnwsp9ijsi7"; depends=[curl data_table dplyr GenomeInfoDb GenomicRanges ggplotify IRanges plyranges purrr RColorBrewer Rcpp rlang strawr withr]; }; + plyinteractions = derive2 { name="plyinteractions"; version="1.2.0"; sha256="095sb616r5xwcbqsgw4b7kiywl6lbwp6rbs80qymglpqkbywwp7j"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicRanges InteractionSet IRanges plyranges rlang S4Vectors tibble tidyselect]; }; + plyranges = derive2 { name="plyranges"; version="1.24.0"; sha256="0rh5l6bd80nhffqpnnc2c00mvp8p32ykld05h94c3y8c9mvmsl58"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges IRanges magrittr rlang Rsamtools rtracklayer S4Vectors tidyselect]; }; + pmm = derive2 { name="pmm"; version="1.36.0"; sha256="1qsv7mrz1w5msxkiqp1rvxy5cgfjkwm432c12rr3gm4z3jy1ma5h"; depends=[lme4]; }; + pmp = derive2 { name="pmp"; version="1.16.0"; sha256="0ryjv1g63nzipym1ijln6nv2w5flv15030b9jp09ddi5p3hn5h1j"; depends=[ggplot2 impute matrixStats missForest pcaMethods reshape2 S4Vectors SummarizedExperiment]; }; + podkat = derive2 { name="podkat"; version="1.36.0"; sha256="0bjan7w0mxylabvaf3c2nqv5yifddslhd4dh360il193qs07g72c"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rhtslib Rsamtools]; }; + pogos = derive2 { name="pogos"; version="1.24.0"; sha256="1i5cmz5icgmd2xd9r19i6xr9v4nydqpydbf84c8ann07p0qyg5b3"; depends=[ggplot2 httr ontoProc rjson S4Vectors shiny]; }; + polyester = derive2 { name="polyester"; version="1.39.0"; sha256="0fw0qhmbygjq4ryspyqikb8rxfn33ks000j7sshgfg8hf2rmqg3x"; depends=[Biostrings IRanges limma logspline S4Vectors zlibbioc]; }; + powerTCR = derive2 { name="powerTCR"; version="1.24.0"; sha256="04w6jhpc1vkqrm3dr5igp1iwkammmi53mqafjz694n379hamxrhg"; depends=[cubature doParallel evmix foreach magrittr purrr truncdist vegan VGAM]; }; + ppcseq = derive2 { name="ppcseq"; version="1.12.0"; sha256="0b8s29zhw3s3nbxf57fa9cixfdwx0q4d3g4b6bi35fsr0r90a44q"; depends=[benchmarkme BH dplyr edgeR foreach ggplot2 lifecycle magrittr purrr Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders tibble tidybayes tidyr]; }; + pqsfinder = derive2 { name="pqsfinder"; version="2.20.0"; sha256="0v2skn7c1vy7s8hbl92v9mq3ckp3xnyq0ijvmihzm5z8yz9bclx6"; depends=[BH Biostrings GenomicRanges IRanges Rcpp S4Vectors]; }; + pram = derive2 { name="pram"; version="1.20.0"; sha256="0cc74whwnjgf8svfps2i0c9n243rzq15ffdwdwdd986mwn6v5kvv"; depends=[BiocGenerics BiocParallel data_table GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; + prebs = derive2 { name="prebs"; version="1.44.0"; sha256="0mzy2w5jq08370nl53ms2xadr46lc0hvlgv2kkw5ikjf58rsfgx7"; depends=[affy Biobase GenomeInfoDb GenomicAlignments GenomicRanges IRanges RPA S4Vectors]; }; + preciseTAD = derive2 { name="preciseTAD"; version="1.14.0"; sha256="0gxq07q8nv2h0j20vsjgbah8121l79sxjhjg9rf79r73pmm1733f"; depends=[caret cluster dbscan doSNOW e1071 foreach GenomicRanges gtools IRanges ModelMetrics pbapply pROC PRROC randomForest rCGH S4Vectors]; }; + preprocessCore = derive2 { name="preprocessCore"; version="1.66.0"; sha256="1cd91iakbpf2hjysc44sqqrah63cgq4fz3n8j81virfwl3ir95xm"; depends=[]; }; + primirTSS = derive2 { name="primirTSS"; version="1.22.0"; sha256="1c932ynp5rsymz6z7m9v38fwm30gja7z60yq3xjwj6gxw1rf7sy5"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg38 dplyr GenomicRanges GenomicScores Gviz IRanges JASPAR2018 phastCons100way_UCSC_hg38 purrr R_utils rtracklayer S4Vectors shiny stringr TFBSTools tibble tidyr]; }; + proActiv = derive2 { name="proActiv"; version="1.14.0"; sha256="1x70jjym4220vkwzhr2cn4hjxvxdh2mhwfyd8rp3wp6gh7d9q87a"; depends=[AnnotationDbi BiocParallel data_table DESeq2 dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges rlang S4Vectors scales SummarizedExperiment tibble txdbmaker]; }; + proBAMr = derive2 { name="proBAMr"; version="1.38.0"; sha256="183wf1045s9ckkcwns33ps237cdip67kv9csx499h2aghhwwvf3y"; depends=[AnnotationDbi Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer txdbmaker]; }; + proDA = derive2 { name="proDA"; version="1.18.0"; sha256="1h3695q4al7pr3q1vj1qfiig6c5lhljxlvxpfbv6k0h987ha1fiw"; depends=[BiocGenerics extraDistr S4Vectors SummarizedExperiment]; }; + procoil = derive2 { name="procoil"; version="2.32.0"; sha256="02p8dy3gi86zp5z842sjx3rcy8a7kvji8mg4xw5krzz4pkzjjk8y"; depends=[Biostrings kebabs S4Vectors]; }; + profileScoreDist = derive2 { name="profileScoreDist"; version="1.32.0"; sha256="0sf2k2iccvfidy0sf2p4xi3bp5gd67izbr2075w302d8085rw1i7"; depends=[BiocGenerics Rcpp]; }; + profileplyr = derive2 { name="profileplyr"; version="1.20.0"; sha256="1gpjmkn1s509smaal15rg3629y69vnxifhyfd8xa65x7m9v1fvbc"; depends=[BiocGenerics BiocParallel ChIPseeker circlize ComplexHeatmap dplyr EnrichedHeatmap GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges magrittr org_Hs_eg_db org_Mm_eg_db pheatmap R_utils rGREAT rjson rlang Rsamtools rtracklayer S4Vectors soGGi SummarizedExperiment tidyr tiff TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene]; }; + progeny = derive2 { name="progeny"; version="1.26.0"; sha256="1f5y1sza9vm7wqd4mp5g7sypc9kbf9zpl015rbl41wz4y3ai21sb"; depends=[Biobase decoupleR dplyr ggplot2 ggrepel gridExtra reshape2 tidyr]; }; + projectR = derive2 { name="projectR"; version="1.20.0"; sha256="1c9v4iw8s4hm7wjdv3ir6df0yskz95b0wnpljiph4zv4h22q32ac"; depends=[cluster cowplot dplyr fgsea ggalluvial ggplot2 ggrepel limma Matrix MatrixModels msigdbr NMF RColorBrewer reshape2 ROCR scales tsne umap viridis]; }; + protGear = derive2 { name="protGear"; version="1.8.0"; sha256="1wbdp7f55lbn0gcxgnp9xk0y5npn7jmk9vp7yq9v76j7f396vj2f"; depends=[Biobase data_table dplyr factoextra FactoMineR flexdashboard genefilter GGally ggplot2 ggpubr gtools htmltools Kendall knitr limma magrittr MASS pheatmap plotly plyr purrr readr remotes rlang rmarkdown shiny shinydashboard styler tibble tidyr vsn]; }; + proteinProfiles = derive2 { name="proteinProfiles"; version="1.44.0"; sha256="1dmy2cmjxclnml8bci6ihw5ak4ibgah4r17yzy9ypas0y457ff5c"; depends=[]; }; + psichomics = derive2 { name="psichomics"; version="1.30.0"; sha256="0nwfaw1a4mxdzqk0zqadxispdasx75nlb19zla753nmydxlpavj0"; depends=[AnnotationDbi AnnotationHub BiocFileCache cluster colourpicker data_table digest dplyr DT edgeR fastICA fastmatch ggplot2 ggrepel highcharter htmltools httr jsonlite limma pairsD3 plyr purrr R_utils Rcpp recount reshape2 Rfast shiny shinyBS shinyjs stringr SummarizedExperiment survival XML xtable]; }; + psygenet2r = derive2 { name="psygenet2r"; version="1.36.0"; sha256="1khjid5lkkn5qpnk9adw1in4km41q067mj5r5yqs2iz5hv4vx6xv"; depends=[BgeeDB Biobase biomaRt ggplot2 GO_db igraph labeling RCurl reshape2 stringr topGO]; }; + ptairMS = derive2 { name="ptairMS"; version="1.12.0"; sha256="0r0h4mdvhbrr3j78qzdcfw7q5q492wx9v78rg2xzw59ynqbyv3gg"; depends=[Biobase bit64 chron data_table doParallel DT enviPat foreach ggplot2 ggpubr gridExtra Hmisc minpack_lm MSnbase plotly Rcpp rhdf5 rlang scales shiny shinyscreenshot signal]; }; + puma = derive2 { name="puma"; version="3.46.0"; sha256="1l6xvj6l9f5kmff3a5q7vzf2sssyhkqpa4im46g53jhkindbqwg6"; depends=[affy affyio Biobase mclust oligo oligoClasses]; }; + pvac = derive2 { name="pvac"; version="1.52.0"; sha256="132hvlnp3cfxazvf0wq1q5v00q5x79fg60r7vsx07wi1vkjba3wg"; depends=[affy Biobase]; }; + pvca = derive2 { name="pvca"; version="1.44.0"; sha256="0bk1nrjhn78wcbcawz8bx2lm3y45mhfv22yrrlxrz91sah9jjw27"; depends=[Biobase lme4 Matrix vsn]; }; + pwOmics = derive2 { name="pwOmics"; version="1.36.0"; sha256="00c198vm7zzsq2a43c6iar5937556s65183wk1k7wy1zl8vqi8vg"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics biomaRt data_table GenomicRanges gplots graph igraph rBiopaxParser STRINGdb]; }; + pwalign = derive2 { name="pwalign"; version="1.0.0"; sha256="1m0j1m5jif5spd9fkpzz3z3c9s8vwiy8xvpx8rz8igxj89rwrwb7"; depends=[BiocGenerics Biostrings IRanges S4Vectors XVector]; }; + qPLEXanalyzer = derive2 { name="qPLEXanalyzer"; version="1.22.0"; sha256="15cmfrp1hilqqkkxphd4lbqmk4mgv3s8ky76bnidfv58qc5pa940"; depends=[assertthat Biobase BiocGenerics Biostrings dplyr ggdendro ggplot2 IRanges limma magrittr MSnbase preprocessCore purrr RColorBrewer readr rlang scales stringr tibble tidyr tidyselect]; }; + qckitfastq = derive2 { name="qckitfastq"; version="1.20.0"; sha256="0wb6r4mdh3zf3hic88cn9s22s0dn7h65gl4djwrcl5sm5b1a6sxm"; depends=[data_table dplyr ggplot2 magrittr Rcpp reshape2 rlang RSeqAn seqTools zlibbioc]; }; + qcmetrics = derive2 { name="qcmetrics"; version="1.42.0"; sha256="0r7c67bjf9j7r9yciljx2sgnarrjaf1gazf6n8rjjar2jfmrsmrm"; depends=[Biobase knitr pander S4Vectors xtable]; }; + qmtools = derive2 { name="qmtools"; version="1.8.0"; sha256="1w0kd1kawf0w4rmlz8pfnabagrjvnyql2bcs2f7nl7sp6q7sfvni"; depends=[ggplot2 heatmaply igraph limma MsCoreUtils patchwork rlang scales SummarizedExperiment VIM]; }; + qpcrNorm = derive2 { name="qpcrNorm"; version="1.62.0"; sha256="1rcs9p5y50ynwmpxqwhigh9qxgs54shrglzjnakq08j24hxkyd2h"; depends=[affy Biobase limma]; }; + qpgraph = derive2 { name="qpgraph"; version="2.38.0"; sha256="040haanlhmd11isghcrdidf2nal4195kskp0q8965x41fbdvsx37"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; }; + qsea = derive2 { name="qsea"; version="1.30.0"; sha256="141fi7zk9czr4j1d0y1hk1hz33nq3k79cdkawp0x92nvja1n9njd"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges gtools HMMcopy IRanges limma Rsamtools rtracklayer S4Vectors zoo]; }; + qsmooth = derive2 { name="qsmooth"; version="1.20.0"; sha256="16c7xjmgrqcklpirnwlqg92v4lj7f599ddl1w36xs8fmq7svz1lj"; depends=[Hmisc SummarizedExperiment sva]; }; + qsvaR = derive2 { name="qsvaR"; version="1.8.0"; sha256="1ijmh0mby6j50icwlcfhn416x0cjj5y0v3qqjmcn4hx6395m90ma"; depends=[ggplot2 SummarizedExperiment sva]; }; + quantiseqr = derive2 { name="quantiseqr"; version="1.12.0"; sha256="0d1afsz7hv4ixpicskzw564cq593jcfkix7rryq5lbj27rz5da3c"; depends=[Biobase ggplot2 limSolve MASS preprocessCore rlang SummarizedExperiment tidyr]; }; + quantro = derive2 { name="quantro"; version="1.38.0"; sha256="0b8afvnczkhmbdg5zna2h5v42zdyvk1zybn9cwcbw22rijiysq99"; depends=[Biobase doParallel foreach ggplot2 iterators minfi RColorBrewer]; }; + quantsmooth = derive2 { name="quantsmooth"; version="1.70.0"; sha256="1mgdrhq0j4b29l3y49h00ccwkz6vhs6hjb1236blmlzdf590q7gc"; depends=[quantreg]; }; + qusage = derive2 { name="qusage"; version="2.38.0"; sha256="06hj1nvp5j4zdqj9v0gc42fd3403phb4gibra4fc1sxzrhi9nq92"; depends=[Biobase emmeans fftw limma nlme]; }; + qvalue = derive2 { name="qvalue"; version="2.36.0"; sha256="1hgkrvbs1rf8db105ik9ar54zdx49v25hn71jgw7j5r43zngfg2a"; depends=[ggplot2 reshape2]; }; + r3Cseq = derive2 { name="r3Cseq"; version="1.50.0"; sha256="02dc6milwymwj90x24fip8av84ik9dp69sg9g7l300kwyk0hcrb7"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges IRanges qvalue RColorBrewer Rsamtools rtracklayer sqldf VGAM]; }; + rBLAST = derive2 { name="rBLAST"; version="1.0.0"; sha256="1yhj08p6iyz2760j2z3v78mc4rzafd0lzfqprq3wd1v1bm34v3qb"; depends=[BiocFileCache Biostrings]; }; + rBiopaxParser = derive2 { name="rBiopaxParser"; version="2.44.0"; sha256="0hzs6i7l8n1hifj3b91n1f6z3l40jdcl1jlnz8z5qczk84266lx2"; depends=[data_table XML]; }; + rCGH = derive2 { name="rCGH"; version="1.34.0"; sha256="0241nrg1kcc6vxj1p6pp5gyjff7k3mdsr764bn3zxvh1wqjnvfrm"; depends=[aCGH affy AnnotationDbi DNAcopy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges lattice limma mclust org_Hs_eg_db plyr shiny TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + rDGIdb = derive2 { name="rDGIdb"; version="1.30.0"; sha256="1v96nj1ffmg1678p7rspcqsnqvwcssv96jcyqqbb8v8sryflwmi5"; depends=[httr jsonlite]; }; + rGADEM = derive2 { name="rGADEM"; version="2.52.0"; sha256="1d1vfnxj1p4y1074ybmkxv4x3v0i3sn5w3k4bddzlrqbzyb9kkna"; depends=[Biostrings BSgenome GenomicRanges IRanges seqLogo]; }; + rGREAT = derive2 { name="rGREAT"; version="2.6.0"; sha256="0sszyfnnzzn5xhs39zgkzr7f3da820nxr6qaw68wknblgmyyddi8"; depends=[AnnotationDbi circlize digest doParallel DT foreach GenomeInfoDb GenomicFeatures GenomicRanges GetoptLong GlobalOptions GO_db IRanges org_Hs_eg_db progress RColorBrewer Rcpp RCurl rjson S4Vectors shiny TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + rGenomeTracks = derive2 { name="rGenomeTracks"; version="1.10.0"; sha256="0a34xdmpj1872vxhd9a2k1rbzgvsmhisyy2pknbz606924k13xnz"; depends=[imager reticulate rGenomeTracksData]; }; + rRDP = derive2 { name="rRDP"; version="1.38.0"; sha256="00r8cii5gnnzd909alq7cn94b3df66w6bcd7pld1jvdphxwgvp3l"; depends=[Biostrings rJava]; }; + rSWeeP = derive2 { name="rSWeeP"; version="1.16.0"; sha256="0l9qpmbgq7pp0g3m2df881zif42d6dbbgkiri97zklndgyi035jp"; depends=[pracma]; }; + rScudo = derive2 { name="rScudo"; version="1.20.0"; sha256="0mhhv5p1z334qn92bql4rsd8p0xpnhd26kzahwi4wqkkb6yqbn8y"; depends=[Biobase BiocGenerics igraph S4Vectors stringr SummarizedExperiment]; }; + rTRM = derive2 { name="rTRM"; version="1.42.0"; sha256="016vhij3rc6sbhi7caxxnpps4w0w2n28x4hqwdxkxk6r0f6kkvla"; depends=[AnnotationDbi DBI igraph RSQLite]; }; + rTRMui = derive2 { name="rTRMui"; version="1.42.0"; sha256="0d5gxjiddy57cbryjdihqyf7nkd35apk41wkl1izp467il40mb75"; depends=[MotifDb org_Hs_eg_db org_Mm_eg_db rTRM shiny]; }; + rWikiPathways = derive2 { name="rWikiPathways"; version="1.24.0"; sha256="1m6djs70h58xs4323vp65j33i8mzql2sps9l04pgp28cs17yr4mc"; depends=[data_table dplyr httr lubridate purrr RCurl readr rjson stringr tidyr XML]; }; + raer = derive2 { name="raer"; version="1.2.0"; sha256="0fxc1i3p1ha0yn6s5c334q2bv7mfwjd3yvlvss6whi16vi63kbwj"; depends=[BiocGenerics BiocParallel Biostrings BSgenome cli GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Matrix Rhtslib Rsamtools rtracklayer S4Vectors SingleCellExperiment SummarizedExperiment]; }; + rain = derive2 { name="rain"; version="1.38.0"; sha256="0wah5qiciwfcvdrii885dvsgbmq7lnjdpgdvzddprf6jwdsgq8w0"; depends=[gmp multtest]; }; + ramr = derive2 { name="ramr"; version="1.12.0"; sha256="096rxydr9qilg4lcczab1xlzv5ff2lq9r5l6bdzyhprm07mglc80"; depends=[BiocGenerics doParallel doRNG EnvStats ExtDist foreach GenomicRanges ggplot2 IRanges matrixStats reshape2 S4Vectors]; }; + ramwas = derive2 { name="ramwas"; version="1.28.0"; sha256="0azf24qvjy2dfizi0wp7lkrhjdm2xwwk6hmkg31ly501cjd4pn9s"; depends=[BiocGenerics biomaRt Biostrings digest filematrix GenomicAlignments glmnet KernSmooth Rsamtools]; }; + randPack = derive2 { name="randPack"; version="1.50.0"; sha256="0byix4ipmd9wnknbzm4pjqp09yh9fa4cjky94p3l1gnbmg8kw48j"; depends=[Biobase]; }; + randRotation = derive2 { name="randRotation"; version="1.16.0"; sha256="1wi9i8ssan3pfjikbjj5m3rs8lv52jdih0pxfk0rzahqak8m82db"; depends=[Rdpack]; }; + rawDiag = derive2 { name="rawDiag"; version="1.0.0"; sha256="1rdccg67gkcxj7jgg0by1244x3794kz4s60l5ps54j41iy3zs0v2"; depends=[BiocManager BiocParallel dplyr ggplot2 hexbin htmltools rawrr reshape2 rlang scales shiny]; }; + rawrr = derive2 { name="rawrr"; version="1.12.0"; sha256="1h8q9j8qiqrmk41j567dq53i1mbm89c9gcj9p8qjqcrjcvykg89f"; depends=[]; }; + rbsurv = derive2 { name="rbsurv"; version="2.62.0"; sha256="1hj569n72bds094dfnr8bpfx1ca0sn4bax8lnjz03yz08kmrv8a6"; depends=[Biobase survival]; }; + rcellminer = derive2 { name="rcellminer"; version="2.26.0"; sha256="0dxg050rw9p88hdv55v60fg2ijjl1dnzxq47xy60nrzpijcb3770"; depends=[Biobase ggplot2 gplots rcellminerData shiny stringr]; }; + rebook = derive2 { name="rebook"; version="1.14.0"; sha256="0v59wr8862phlv4byy3j3l0spm7450vz218xffgwlkwixzw3hnnk"; depends=[BiocStyle CodeDepends dir_expiry filelock knitr rmarkdown]; }; + receptLoss = derive2 { name="receptLoss"; version="1.16.0"; sha256="1c110rpfbi6rgl97659qx5qyj6wp6sqzddpnjg3bir21nh6902fl"; depends=[dplyr ggplot2 magrittr SummarizedExperiment tidyr]; }; + reconsi = derive2 { name="reconsi"; version="1.16.0"; sha256="13xviw2qn8sk7ka6qskb39dsv9qz4vkfdydpzzvm14y6iy62zgzr"; depends=[ggplot2 ks Matrix matrixStats phyloseq reshape2]; }; + recount = derive2 { name="recount"; version="1.30.2"; sha256="0fdnp0ilvxkzyzwblbchf6ns1v6fah32zyg3y68pz88ir5nwg49b"; depends=[BiocParallel derfinder downloader GenomeInfoDb GenomicRanges GEOquery IRanges RCurl rentrez rtracklayer S4Vectors SummarizedExperiment]; }; + recount3 = derive2 { name="recount3"; version="1.14.0"; sha256="1dmc5s5mw95caq2pqpgik5z5nggy5mnas1dawssiyhr10wivnjd0"; depends=[BiocFileCache data_table GenomicRanges httr Matrix R_utils rtracklayer S4Vectors sessioninfo SummarizedExperiment]; }; + recountmethylation = derive2 { name="recountmethylation"; version="1.14.0"; sha256="0cbp1cz6h1djwgrv2achgypmxiracrjm8y8sj1f9iqy6i1fgq8jl"; depends=[basilisk BiocFileCache DelayedMatrixStats HDF5Array minfi R_utils RCurl reticulate rhdf5 S4Vectors]; }; + recoup = derive2 { name="recoup"; version="1.32.0"; sha256="07313l0b78x0m0vp8ipngzv069v7vjgr8q7vv4j9kbr33kql3bp6"; depends=[BiocGenerics biomaRt Biostrings circlize ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 httr IRanges Rsamtools RSQLite rtracklayer S4Vectors stringr txdbmaker]; }; + regionReport = derive2 { name="regionReport"; version="1.38.0"; sha256="1nxs0slhhnxpjg220irf0a6hsh1zp0xh54ffpvl25lzgy422xwpp"; depends=[BiocStyle DEFormats derfinder DESeq2 GenomeInfoDb GenomicRanges knitr knitrBootstrap RefManageR rmarkdown S4Vectors SummarizedExperiment]; }; + regionalpcs = derive2 { name="regionalpcs"; version="1.2.0"; sha256="1hrmxb2ag0d823kn3ya07rwgfv931x2shqzdq3q310rw9jllcwgd"; depends=[dplyr GenomicRanges PCAtools tibble]; }; + regioneR = derive2 { name="regioneR"; version="1.36.0"; sha256="1ygdlqvhf165mqd247783pi1yzidqap8b913444vrs881n62xvrb"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges memoise rtracklayer S4Vectors]; }; + regioneReloaded = derive2 { name="regioneReloaded"; version="1.6.0"; sha256="1yi97sarqljayqm5lwci0z768qk0vzqiazpx8j6lvpsqhrsgmcry"; depends=[cluster ggplot2 ggrepel RColorBrewer regioneR reshape2 Rtsne scales umap]; }; + regsplice = derive2 { name="regsplice"; version="1.30.0"; sha256="0cmqigb2klpq7nqvhmvmyf9xzgjfvw22zpgpcjnlv24ga30sacak"; depends=[edgeR glmnet limma pbapply S4Vectors SummarizedExperiment]; }; + regutools = derive2 { name="regutools"; version="1.16.0"; sha256="1ypy9nrafnr7ri4a2cz5akm78cdq0qahlmbcs8ylr97bimkdandk"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings DBI GenomicRanges Gviz IRanges RCy3 RSQLite S4Vectors]; }; + retrofit = derive2 { name="retrofit"; version="1.4.0"; sha256="1dx2yfz7f18sknl75igmfzk3nfrp28pjkbkpn1w6zx1sbj6dbxsl"; depends=[Rcpp]; }; + rexposome = derive2 { name="rexposome"; version="1.26.0"; sha256="13ivwypcw58bmlrps16anhxf0dxk8v16wyadwz4wds4rd0ihjvcz"; depends=[Biobase circlize corrplot FactoMineR ggplot2 ggrepel ggridges glmnet gplots gridExtra gtools Hmisc imputeLCMD lme4 lsr mice pryr reshape2 S4Vectors scales scatterplot3d stringr]; }; + rfPred = derive2 { name="rfPred"; version="1.42.0"; sha256="02clazsix7n4nnz1kn7hkk48fggxp2bqf97xbzngnljskvlhnakb"; depends=[data_table GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; + rfaRm = derive2 { name="rfaRm"; version="1.16.0"; sha256="1c8kpcbwkz33cbc8xqfd5cqj1n979a9ijbj06nfgylkm71ma1682"; depends=[Biostrings data_table httr IRanges jsonlite magick rsvg rvest S4Vectors stringi xml2]; }; + rgoslin = derive2 { name="rgoslin"; version="1.8.0"; sha256="0saxw5kppcw0hwjykgzx8873izbl509hq1ga8w9qg2c5zx5xahk9"; depends=[dplyr Rcpp]; }; + rgsepd = derive2 { name="rgsepd"; version="1.36.0"; sha256="18r2naxir299k0gcd9j3a5rvdma590m06v38j8wiligsgw5cmkfg"; depends=[AnnotationDbi biomaRt DESeq2 GO_db goseq gplots org_Hs_eg_db SummarizedExperiment]; }; + rhdf5 = derive2 { name="rhdf5"; version="2.48.0"; sha256="086bnwzmlwq3z9a4kb1rnzb2wnchhi4gvzpijhladgd83nqyb0wn"; depends=[rhdf5filters Rhdf5lib]; }; + rhdf5client = derive2 { name="rhdf5client"; version="1.26.0"; sha256="17c8r361za3760lkik2b88c3m8zska33qam2iwbl5hw9yhkrl6ck"; depends=[data_table DelayedArray httr rjson]; }; + rhdf5filters = derive2 { name="rhdf5filters"; version="1.16.0"; sha256="0fsfp34pfb5k030j7nfx9b9vsil02y85sv1dd1y0bfdxchi4bw8x"; depends=[Rhdf5lib]; }; + riboSeqR = derive2 { name="riboSeqR"; version="1.38.0"; sha256="0p0q28n8hlai80pxxns9pzzg552pbwlxlph8zjf78bwbjagrfbz5"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors seqLogo]; }; + ribor = derive2 { name="ribor"; version="1.16.0"; sha256="0kymbmm96a7ccl0dz46sk0lzgf3n55qvdkywkj91kh0ddrsji0vi"; depends=[dplyr ggplot2 hash rhdf5 rlang S4Vectors tidyr yaml]; }; + ribosomeProfilingQC = derive2 { name="ribosomeProfilingQC"; version="1.16.0"; sha256="0bblk7ncxdrbgmgcjvif9zgd1ynlh4205vlmgr42jbg5p1i7p3in"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome cluster EDASeq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggExtra ggfittext ggplot2 ggrepel IRanges motifStack Rsamtools Rsubread rtracklayer RUVSeq S4Vectors scales txdbmaker XVector]; }; + rifi = derive2 { name="rifi"; version="1.8.0"; sha256="0yajsqm27zy5imb719x8knsrn9rk85q98wc65xqmvj9bkqkjfvdl"; depends=[car cowplot doMC dplyr egg foreach ggplot2 nls2 nnet reshape2 rlang rtracklayer S4Vectors scales stringr SummarizedExperiment tibble]; }; + rifiComparative = derive2 { name="rifiComparative"; version="1.4.0"; sha256="0isgcbmk7c99xhlasaaa2gyjf9827zfdq1vyf4xc21lyhv9q5j51"; depends=[cowplot devtools doMC dplyr DTA egg foreach ggplot2 ggrepel LSD nnet reshape2 rlang rtracklayer S4Vectors scales stringr SummarizedExperiment tibble writexl]; }; + rmelting = derive2 { name="rmelting"; version="1.20.0"; sha256="1rk27wg4j8hldmrzcjymw3hhaq9cm4bjz5fqwjzx8kdrs94wwrid"; depends=[Rdpack rJava]; }; + rmspc = derive2 { name="rmspc"; version="1.10.0"; sha256="0f9l8gbbd81ac871fbpknyxsjwy9l1xz3nfbvnic012gg33n6j4y"; depends=[BiocManager GenomicRanges processx rtracklayer stringr]; }; + rnaEditr = derive2 { name="rnaEditr"; version="1.14.0"; sha256="1jghirl1iz11wm4sq8qvw2fvgha7q6ili6bddgpdfcn07abbkcsm"; depends=[BiocGenerics bumphunter corrplot GenomeInfoDb GenomicRanges IRanges logistf plyr S4Vectors survival]; }; + rnaseqcomp = derive2 { name="rnaseqcomp"; version="1.34.0"; sha256="00lv24xxf9644gikb76wwk9bijfa3frpwb4n0cbq5fsx0b1288rs"; depends=[RColorBrewer]; }; + roar = derive2 { name="roar"; version="1.40.0"; sha256="06d1w5kknm2mb6v6glmyd97n1a33529kgqkkyfbk277ikn45hi9f"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicRanges IRanges rtracklayer S4Vectors SummarizedExperiment]; }; + roastgsa = derive2 { name="roastgsa"; version="1.2.0"; sha256="00rxmlx94y03mkz5jbwqx4px1cwv63nblhj2yxidy2k5374fk7fy"; depends=[Biobase ggplot2 gplots limma RColorBrewer]; }; + rols = derive2 { name="rols"; version="3.0.0"; sha256="04kpfb0vavlkxirl9hgl6wdqhy6kw6ly3fyk0jr85kdzdb8ss1xd"; depends=[Biobase BiocGenerics httr2 jsonlite]; }; + ropls = derive2 { name="ropls"; version="1.36.0"; sha256="0cdkwzrbr6h1dfi3qdh629hi2jlm1hxgq4dvx4z3vc2r6w0c6m11"; depends=[Biobase ggplot2 MultiAssayExperiment MultiDataSet plotly SummarizedExperiment]; }; + rprimer = derive2 { name="rprimer"; version="1.8.0"; sha256="04maldspcfzszvbgvzq4fmaf62639kb2rs2dqm9r9miqqxqndkr3"; depends=[Biostrings bslib DT ggplot2 IRanges mathjaxr patchwork reshape2 S4Vectors shiny shinycssloaders shinyFeedback]; }; + rpx = derive2 { name="rpx"; version="2.12.0"; sha256="1a3rh2f9wwgcgadgb5ryj8vs9kcyhqwz7wdnykv2pl3pgm8ba2zp"; depends=[BiocFileCache curl jsonlite RCurl xml2]; }; + rqubic = derive2 { name="rqubic"; version="1.50.0"; sha256="1hr0i7f8987x79ir34yg65bzkd7lij03rkfmw6dr289d8kjclap2"; depends=[biclust Biobase BiocGenerics]; }; + rrvgo = derive2 { name="rrvgo"; version="1.16.0"; sha256="1339cxx5sizbdhhya1kxq9x31m2qvdl993abr4pn07hs3awya63p"; depends=[AnnotationDbi ggplot2 ggrepel GO_db GOSemSim pheatmap shiny tm treemap umap wordcloud]; }; + rsbml = derive2 { name="rsbml"; version="2.62.0"; sha256="02pmxg0ppy1asjscp13kmqyj2phw4q138fj2b3xgmcagwxqzb4bs"; depends=[BiocGenerics graph]; }; + rsemmed = derive2 { name="rsemmed"; version="1.14.0"; sha256="12m771wipjr823k88f38waqsm1nq7qig7200969g2dz8fiaaxjxx"; depends=[dplyr igraph magrittr stringr]; }; + rtracklayer = derive2 { name="rtracklayer"; version="1.64.0"; sha256="0h2cqr1jqqqxvkmqpngfl8ppm1p65vvlb1wgfwl9r4f99b8vz33g"; depends=[BiocGenerics BiocIO Biostrings curl GenomeInfoDb GenomicAlignments GenomicRanges httr IRanges restfulr Rsamtools S4Vectors XML XVector zlibbioc]; }; + runibic = derive2 { name="runibic"; version="1.26.0"; sha256="0q25b2dfgp82p156l37zzl5a842ah3hzq60f9gkcv4vqkns99z64"; depends=[biclust Rcpp SummarizedExperiment testthat]; }; + sRACIPE = derive2 { name="sRACIPE"; version="1.20.0"; sha256="0kkfci9mifhb905c88cyfvwy6yacb1ar0ai6lcxhyx60bwnv6x7i"; depends=[BiocGenerics ggplot2 gplots gridExtra htmlwidgets MASS RColorBrewer Rcpp reshape2 S4Vectors SummarizedExperiment umap visNetwork]; }; + sSNAPPY = derive2 { name="sSNAPPY"; version="1.8.0"; sha256="0ij3f7xax92jihzhf6axx7sq36jcnvyjfhgan1m1mcsaandb4d4k"; depends=[dplyr edgeR ggforce ggplot2 ggraph graphite gtools igraph magrittr org_Hs_eg_db pheatmap reshape2 rlang stringr SummarizedExperiment tibble tidyr]; }; + sSeq = derive2 { name="sSeq"; version="1.42.0"; sha256="08wjz54qsgdwbf3rscb8mzqx2ffm62dm589zj4hflb1ayhgza2ai"; depends=[caTools RColorBrewer]; }; + safe = derive2 { name="safe"; version="3.44.0"; sha256="1kxl9rqqpnihz5rhgv07q0vgqxpams4iyf2w11ffv59b2gi1brrr"; depends=[AnnotationDbi Biobase SparseM]; }; + sagenhaft = derive2 { name="sagenhaft"; version="1.74.0"; sha256="1gqil6dqjrqlxnj8sfhwi2izmqcj9i6id3wfskvkn3xw12hk3cnp"; depends=[SparseM]; }; + sampleClassifier = derive2 { name="sampleClassifier"; version="1.28.0"; sha256="12c8di5xw7q3a78z75labq3qzwsnk7s1xr5c75xsy8k2f04npn0z"; depends=[annotate e1071 ggplot2 MGFM MGFR]; }; + sangeranalyseR = derive2 { name="sangeranalyseR"; version="1.14.0"; sha256="1l5capnvhd78lzaiv44q9qiw9vdlnygmflmrqyv3ck3qk59hwsaw"; depends=[ape BiocStyle Biostrings data_table DECIPHER DT excelR ggdendro gridExtra knitr logger openxlsx plotly pwalign reshape2 rmarkdown sangerseqR seqinr shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr zeallot]; }; + sangerseqR = derive2 { name="sangerseqR"; version="1.40.0"; sha256="01z2b7950yxhv8p73rfmq84bscrlpl956ihfyarnzdq9v9ljzzd9"; depends=[Biostrings pwalign shiny stringr]; }; + sarks = derive2 { name="sarks"; version="1.16.0"; sha256="1ayfxfgk1zwmychdlhbq3can76swa127z5r587frs3c23zbm8qi2"; depends=[binom Biostrings cluster IRanges rJava]; }; + saseR = derive2 { name="saseR"; version="1.0.0"; sha256="1ibr75zm09h9cwzizljlv33s09y2jz2fasnblhmm59xdb8gwl7vg"; depends=[ASpli BiocGenerics BiocParallel data_table DESeq2 DEXSeq dplyr edgeR GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges knitr limma MASS MatrixGenerics pracma precrec PRROC rrcov S4Vectors SummarizedExperiment]; }; + satuRn = derive2 { name="satuRn"; version="1.12.0"; sha256="03mlb4j219w8760zm5hnryjwxns3qz9y3wl6zaqdfnl94bwyl9r8"; depends=[BiocParallel boot ggplot2 limma locfdr Matrix pbapply SummarizedExperiment]; }; + scAnnotatR = derive2 { name="scAnnotatR"; version="1.10.0"; sha256="1gzssp7im1d9pp2mbar27k854fcc3rqyza5d77flmhshq88xrskv"; depends=[AnnotationHub ape caret data_tree dplyr e1071 ggplot2 kernlab pROC ROCR Seurat SingleCellExperiment SummarizedExperiment]; }; + scBFA = derive2 { name="scBFA"; version="1.18.0"; sha256="0zq4xnvzlprhlv2n7d41ikms6cmwvm51sn3f61841ch6hdfai7my"; depends=[copula DESeq2 ggplot2 MASS Matrix Seurat SingleCellExperiment SummarizedExperiment zinbwave]; }; + scBubbletree = derive2 { name="scBubbletree"; version="1.6.0"; sha256="0adzmw4bzs1a857bwwq63niwgn5wm3mdqxbqhily49h7yxnf3rv7"; depends=[ape future future_apply ggplot2 ggtree patchwork proxy reshape2 scales Seurat]; }; + scCB2 = derive2 { name="scCB2"; version="1.14.0"; sha256="1iwcx1wra4f3lnqsmbs5m0agd6ffmpmdwn767n8q0qgvy8sdjaw0"; depends=[doParallel DropletUtils edgeR foreach iterators Matrix rhdf5 Seurat SingleCellExperiment SummarizedExperiment]; }; + scDD = derive2 { name="scDD"; version="1.28.0"; sha256="106hawmyln6xj9m2npibb4lkd8qvz60lwjabhn3cpx3908x88ryb"; depends=[arm BiocParallel EBSeq fields ggplot2 mclust outliers S4Vectors scran SingleCellExperiment SummarizedExperiment]; }; + scDDboost = derive2 { name="scDDboost"; version="1.6.0"; sha256="0q4vrrcnnhwb3r9jn13d1wsjn9mxai39pxaa9lf6zmg1v17aqmhg"; depends=[BH BiocParallel cluster EBSeq ggplot2 mclust Oscope Rcpp RcppEigen SingleCellExperiment SummarizedExperiment]; }; + scDataviz = derive2 { name="scDataviz"; version="1.14.0"; sha256="1njm8ym44ml51sbz001niclmkl4q78yid8ik76j9xnwldd9cb2c8"; depends=[corrplot flowCore ggplot2 ggrepel MASS matrixStats RColorBrewer reshape2 S4Vectors scales Seurat SingleCellExperiment umap]; }; + scDblFinder = derive2 { name="scDblFinder"; version="1.18.0"; sha256="1np3arhjxxgif68i0wi0nqqbrwavy14dh9vy2g9mw4408k7789w0"; depends=[BiocGenerics BiocNeighbors BiocParallel BiocSingular bluster DelayedArray GenomeInfoDb GenomicRanges igraph IRanges MASS Matrix Rsamtools rtracklayer S4Vectors scater scran scuttle SingleCellExperiment SummarizedExperiment xgboost]; }; + scDesign3 = derive2 { name="scDesign3"; version="1.2.0"; sha256="0jf8g5llkcashxsjsm39fivdqpyjx40gn362yzpwcfh81f4x95x1"; depends=[BiocParallel coop dplyr gamlss gamlss_dist ggplot2 irlba Matrix matrixStats mclust mgcv mvtnorm pbmcapply rvinecopulib SingleCellExperiment sparseMVN SummarizedExperiment tibble umap viridis]; }; + scFeatureFilter = derive2 { name="scFeatureFilter"; version="1.24.0"; sha256="1lxgk9dki9l4qjgm3myqrjg59a4avd2h6phaibxk28rsh7agzw5h"; depends=[dplyr ggplot2 magrittr rlang tibble]; }; + scFeatures = derive2 { name="scFeatures"; version="1.4.0"; sha256="178xpi6r1avbp4g9v5yd46jhnra6md47mljpn9y8a5991wh0rc4i"; depends=[ape AUCell BiocParallel cli DelayedArray DelayedMatrixStats dplyr DT EnsDb_Hsapiens_v79 EnsDb_Mmusculus_v79 ensembldb glue GSVA gtools MatrixGenerics msigdbr proxyC reshape2 rmarkdown Seurat SingleCellSignalR spatstat_explore spatstat_geom tidyr]; }; + scGPS = derive2 { name="scGPS"; version="1.18.0"; sha256="1l4rn2amrgih6fi3dshxdjgmvimv93qfan6asy77lgaf8vwa7rlh"; depends=[caret DESeq2 dplyr dynamicTreeCut fastcluster ggplot2 glmnet locfit Rcpp RcppArmadillo RcppParallel SingleCellExperiment SummarizedExperiment]; }; + scHOT = derive2 { name="scHOT"; version="1.16.0"; sha256="07sk0yn5ji2avhmdwyzdl466pqncvij1zf0yicw5lpb62f1ac446"; depends=[BiocParallel ggforce ggplot2 igraph IRanges Matrix reshape S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scMET = derive2 { name="scMET"; version="1.6.0"; sha256="1v0x40720npv2c468mhydycrhff9bz2c8m35n3j4y7bja05qaazx"; depends=[assertthat BH BiocStyle coda cowplot data_table dplyr ggplot2 logitnorm MASS Matrix matrixStats Rcpp RcppEigen RcppParallel rstan rstantools S4Vectors SingleCellExperiment StanHeaders SummarizedExperiment VGAM viridis]; }; + scMerge = derive2 { name="scMerge"; version="1.20.0"; sha256="0v344a2r7hw0x3b3192796sa922sc3jgi7z7pzbx6pcn4c5c9zw4"; depends=[batchelor BiocNeighbors BiocParallel BiocSingular cluster cvTools DelayedArray DelayedMatrixStats distr igraph M3Drop proxyC ruv S4Vectors scater scran SingleCellExperiment SummarizedExperiment]; }; + scMitoMut = derive2 { name="scMitoMut"; version="1.0.0"; sha256="143h22x71pgmzky1z6g6qvqq1qcb1852341sfsv4dwj2w5j00njm"; depends=[data_table ggplot2 magrittr pheatmap plyr RColorBrewer Rcpp RcppArmadillo readr rhdf5 stringr zlibbioc]; }; + scMultiSim = derive2 { name="scMultiSim"; version="1.0.0"; sha256="16kdxksszq0zhl7z1xavsr5s5fq9259g86pfbg2bqdwqhl1xgf70"; depends=[ape assertthat crayon dplyr foreach ggplot2 gplots igraph KernelKnn markdown MASS matrixStats phytools rlang Rtsne SummarizedExperiment zeallot]; }; + scPCA = derive2 { name="scPCA"; version="1.18.0"; sha256="00lfwv1l9w9wjqqpgy9hx2sxb7lps7av3lpr5670c2ncf30jm68m"; depends=[assertthat BiocParallel cluster coop DelayedArray dplyr elasticnet kernlab Matrix MatrixGenerics matrixStats origami purrr Rdpack RSpectra ScaledMatrix sparsepca stringr tibble]; }; + scPipe = derive2 { name="scPipe"; version="2.4.0"; sha256="0n786qxxkfiag88fi4bsf9vgmvx179cxfah6sld5ij34vq224809"; depends=[AnnotationDbi basilisk BiocGenerics biomaRt Biostrings data_table dplyr DropletUtils flexmix GenomicAlignments GenomicRanges GGally ggplot2 glue hash IRanges magrittr MASS Matrix mclust MultiAssayExperiment org_Hs_eg_db org_Mm_eg_db purrr Rcpp reshape reticulate Rhtslib rlang robustbase Rsamtools Rsubread rtracklayer S4Vectors scales SingleCellExperiment stringr SummarizedExperiment testthat tibble tidyr vctrs zlibbioc]; }; + scRNAseqApp = derive2 { name="scRNAseqApp"; version="1.4.0"; sha256="19wwsmslhya3m5qmqyg6pmm510r0zrh8480h1z8b7jcmkkhyla81"; depends=[bibtex bslib circlize ComplexHeatmap data_table DBI DT GenomeInfoDb GenomicRanges ggdendro ggforce ggplot2 ggrepel ggridges gridExtra htmltools IRanges jsonlite magrittr patchwork plotly RColorBrewer RefManageR rhdf5 Rsamtools RSQLite rtracklayer S4Vectors scales scrypt Seurat SeuratObject shiny shinyhelper shinymanager SingleCellExperiment slingshot sortable xfun xml2]; }; + scReClassify = derive2 { name="scReClassify"; version="1.10.0"; sha256="1m7l19kyfnwzk2wcmc9v5xmssfx1nm4v00z986s4xx7mhhx05dki"; depends=[e1071 randomForest SingleCellExperiment SummarizedExperiment]; }; + scRecover = derive2 { name="scRecover"; version="1.20.0"; sha256="0nxxsgm7sr4mlskgflbf3xi322j67zfdvbk6vxwwp5bxil2r0m13"; depends=[bbmle BiocParallel doParallel foreach gamlss kernlab MASS Matrix penalized preseqR pscl rsvd SAVER]; }; + scRepertoire = derive2 { name="scRepertoire"; version="2.0.0"; sha256="1ifnyfzswisacvxxf041l1snfv1b8x30pjg2pwampg804c56f1wj"; depends=[cubature dplyr evmix ggalluvial ggdendro ggplot2 ggraph hash igraph iNEXT plyr quantreg Rcpp reshape2 rjson rlang S4Vectors SeuratObject SingleCellExperiment stringdist stringr SummarizedExperiment tidygraph truncdist VGAM]; }; + scShapes = derive2 { name="scShapes"; version="1.10.0"; sha256="003948wggm6hss2yl9hizil0jv78yd3jipvrs9js8c93fp78cbrw"; depends=[BiocParallel dgof emdbook magrittr MASS Matrix pscl VGAM]; }; + scTGIF = derive2 { name="scTGIF"; version="1.18.0"; sha256="13sj8gqmjaq2qcap7dh8gb2di4v59qw3g7l7ryc7crfmj7c9wipd"; depends=[Biobase BiocStyle ggplot2 GSEABase igraph knitr msigdbr nnTensor plotly RColorBrewer Rcpp rmarkdown S4Vectors scales schex SingleCellExperiment SummarizedExperiment tagcloud tibble]; }; + scTHI = derive2 { name="scTHI"; version="1.16.0"; sha256="0p9k1fh4k2gqv326vfxshmcwsqpyz5zhsr0xnzw9iz7rykpf7m81"; depends=[BiocParallel Rtsne]; }; + scTensor = derive2 { name="scTensor"; version="2.14.0"; sha256="1s4ayn2wx63zfqj6vh2zmnb6a3khwfwq5s7jsllgdwcxq8039i11"; depends=[abind AnnotationDbi AnnotationHub BiocManager BiocStyle Category ccTensor checkmate crayon DOSE ggplot2 GOstats heatmaply igraph knitr MeSHDbi meshr nnTensor outliers plotly plotrix reactome_db ReactomePA rmarkdown RSQLite rTensor S4Vectors schex SingleCellExperiment SummarizedExperiment tagcloud visNetwork]; }; + scTreeViz = derive2 { name="scTreeViz"; version="1.10.0"; sha256="1vmqd4bml6ikpbbd90kqrrfhi1bkv9vdjlxcai588807vcckg54a"; depends=[clustree data_table digest epivizr epivizrData epivizrServer ggplot2 ggraph httr igraph Matrix Rtsne S4Vectors scater scran Seurat SingleCellExperiment SummarizedExperiment sys]; }; + scanMiR = derive2 { name="scanMiR"; version="1.10.0"; sha256="1nmkfpkvq3qbgnql8c7glmxjyszwqp546v1ah78crnn3lnqkdchx"; depends=[BiocParallel Biostrings cowplot data_table GenomeInfoDb GenomicRanges ggplot2 IRanges pwalign S4Vectors seqLogo stringi]; }; + scanMiRApp = derive2 { name="scanMiRApp"; version="1.10.0"; sha256="12id6sla58gk1xj56vh7aamkrplx85f2am58brq3p384z5inx9kj"; depends=[AnnotationDbi AnnotationFilter AnnotationHub BiocParallel Biostrings data_table digest DT ensembldb fst GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 htmlwidgets IRanges Matrix plotly rintrojs rtracklayer S4Vectors scanMiR scanMiRData shiny shinycssloaders shinydashboard shinyjqui txdbmaker waiter]; }; + scater = derive2 { name="scater"; version="1.32.0"; sha256="096crwk5a9i7h2pykyi6vgnrnxas9wdz5dx920yh74smyh527jiq"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray ggbeeswarm ggplot2 ggrastr ggrepel Matrix MatrixGenerics pheatmap RColorBrewer RcppML rlang Rtsne S4Vectors scuttle SingleCellExperiment SummarizedExperiment uwot viridis]; }; + scatterHatch = derive2 { name="scatterHatch"; version="1.10.0"; sha256="1pxax6kyh5izn00g3vp1b94zcsm1qg7sq2f307zg8v3i53sajl54"; depends=[ggplot2 plyr spatstat_geom]; }; + sccomp = derive2 { name="sccomp"; version="1.8.0"; sha256="1dgv5pyf765p84i070fwdmhj1878rcimzjd6n3kx8j5r7mv10ff5"; depends=[BH boot dplyr forcats ggplot2 ggrepel glue lifecycle magrittr patchwork purrr Rcpp RcppEigen RcppParallel readr rlang rstan rstantools scales SeuratObject SingleCellExperiment StanHeaders stringr tibble tidyr tidyselect]; }; + scde = derive2 { name="scde"; version="2.32.0"; sha256="0s54h3p8kvlk7imv8w8m1gwslyahn6jrggpkbgga5z7mqakvag6c"; depends=[BiocParallel Cairo edgeR extRemes flexmix MASS mgcv nnet pcaMethods quantreg RColorBrewer Rcpp RcppArmadillo rjson RMTstat Rook]; }; + scds = derive2 { name="scds"; version="1.20.0"; sha256="19xma4kmx8s6m6dvqyw461ahqyfqb7z3n5dz4ppab4xcpmqvx0vh"; depends=[dplyr Matrix pROC S4Vectors SingleCellExperiment SummarizedExperiment xgboost]; }; + schex = derive2 { name="schex"; version="1.18.0"; sha256="1wb3sksxvj08zqg34scwg1xrzj3hdk2jmyqswd03cjppyjy3ysq6"; depends=[cluster concaveman dplyr entropy ggforce ggplot2 hexbin rlang SingleCellExperiment]; }; + scider = derive2 { name="scider"; version="1.2.0"; sha256="0i1p5pf6jc2f39cfmi5d8ifc7lb5n7m7k0lkgif5vhm2z4nfhrnf"; depends=[ggplot2 igraph isoband janitor knitr lwgeom pheatmap plotly rlang S4Vectors sf shiny SpatialExperiment spatstat_explore spatstat_geom SummarizedExperiment]; }; + scifer = derive2 { name="scifer"; version="1.6.0"; sha256="022dn1492hjiyxxq0mqhvs299lgzg26jik7y5brh0i0ajj1j63fv"; depends=[Biostrings data_table DECIPHER dplyr flowCore ggplot2 gridExtra kableExtra knitr plyr rlang rmarkdown sangerseqR scales stringr tibble]; }; + scmap = derive2 { name="scmap"; version="1.26.0"; sha256="0acy3sg4j36znsfxpkb190wbawbngx15cr5x2lhgrjivvw3637x1"; depends=[Biobase BiocGenerics dplyr e1071 ggplot2 googleVis matrixStats proxy randomForest Rcpp RcppArmadillo reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scmeth = derive2 { name="scmeth"; version="1.24.0"; sha256="1yrww6b0lnh4831iw9adjimdazfa3f1w66pypzi99ywdcbdyksg8"; depends=[AnnotationHub annotatr Biostrings BSgenome bsseq DelayedArray DT GenomeInfoDb GenomicRanges HDF5Array knitr reshape2 rmarkdown SummarizedExperiment]; }; + scone = derive2 { name="scone"; version="1.28.0"; sha256="1qvnc6cds3avxh1k4z47vb2fih7q8a5b9hccnyrpfks5c0sd6yi0"; depends=[aroma_light BiocParallel boot class cluster compositions diptest edgeR fpc gplots hexbin limma MatrixGenerics matrixStats mixtools rARPACK RColorBrewer rhdf5 RUVSeq SingleCellExperiment SummarizedExperiment]; }; + scoreInvHap = derive2 { name="scoreInvHap"; version="1.26.0"; sha256="0sdawb2xsrwyqsk18rfzpk7f5ryl3pznawz3b6v5s143vg3d7s84"; depends=[BiocParallel Biostrings GenomicRanges snpStats SummarizedExperiment VariantAnnotation]; }; + scp = derive2 { name="scp"; version="1.14.0"; sha256="1b8hfvjpvni672qz6y53sy2wxbrn8anpanjd9qnixxisg94c66qj"; depends=[dplyr ggplot2 ggrepel IHW matrixStats metapod MsCoreUtils MultiAssayExperiment nipals QFeatures RColorBrewer S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scran = derive2 { name="scran"; version="1.32.0"; sha256="0s1y2q4v596wxh8p5sr43mk9cnsc4kg36ld7vx71hbn3hwscqaa1"; depends=[beachmat BH BiocGenerics BiocParallel BiocSingular bluster DelayedArray DelayedMatrixStats dqrng edgeR igraph limma Matrix metapod Rcpp S4Vectors scuttle SingleCellExperiment statmod SummarizedExperiment]; }; + screenCounter = derive2 { name="screenCounter"; version="1.4.0"; sha256="0xq6ay76lnbbdibvyvkfk0nb8i8hxmvnxb4gfi2sj4ggsrz49rcz"; depends=[BiocParallel Rcpp S4Vectors SummarizedExperiment zlibbioc]; }; + scruff = derive2 { name="scruff"; version="1.22.0"; sha256="0gw8xj4agiz1j5lwp5zpa6m5k9wkkzrvcyzrrnqva1768v8123vb"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 ggthemes parallelly plyr Rsamtools Rsubread rtracklayer S4Vectors scales ShortRead SingleCellExperiment stringdist SummarizedExperiment txdbmaker]; }; + scry = derive2 { name="scry"; version="1.16.0"; sha256="16489ff1nc798nfcmqvqaczm7hqffkhpad1dfgr7dxlahd8sbnw9"; depends=[BiocSingular DelayedArray glmpca Matrix SingleCellExperiment SummarizedExperiment]; }; + scuttle = derive2 { name="scuttle"; version="1.14.0"; sha256="1cja56k5y5vi1x0jdxaxvh13fc2lzh8g30gp294pz6p61prrf3ws"; depends=[beachmat BiocGenerics BiocParallel DelayedArray DelayedMatrixStats GenomicRanges Matrix Rcpp S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scviR = derive2 { name="scviR"; version="1.4.0"; sha256="0691v3kyhazmhzr2nqzc1inbc7i1kdjv4y94wl96fd20d48ypqhp"; depends=[basilisk BiocFileCache limma MatrixGenerics pheatmap reticulate S4Vectors scater shiny SingleCellExperiment SummarizedExperiment]; }; + sechm = derive2 { name="sechm"; version="1.12.0"; sha256="0ig46ikddqqd9sclbxrv1gffc6snz0h7pindfw06cdk2i4dsan30"; depends=[circlize ComplexHeatmap matrixStats randomcoloR S4Vectors seriation SummarizedExperiment]; }; + segmentSeq = derive2 { name="segmentSeq"; version="2.38.0"; sha256="114sv9k2zlgsg82z57wwnp74hmq8p22gy5dg8my91xb3rzv3h8xw"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; }; + segmenter = derive2 { name="segmenter"; version="1.10.0"; sha256="0s4iphqgwdr0shg71gr273s20q9vrzhxq3nfqqv494z7raycf1qy"; depends=[bamsignals ChIPseeker chromhmmData ComplexHeatmap GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; + selectKSigs = derive2 { name="selectKSigs"; version="1.16.0"; sha256="16cq4pg402a64vp0r1k9m91jqbdzij3la9gbzqqjc2vyr742yl14"; depends=[gtools HiLDA magrittr Rcpp]; }; + semisup = derive2 { name="semisup"; version="1.28.0"; sha256="0pmbjlgaqs9mbmyzg1d85ifp8pbjicyqs23jw8nnhlsrmpjgcywx"; depends=[VGAM]; }; + seq_hotSPOT = derive2 { name="seq.hotSPOT"; version="1.4.0"; sha256="0wyl4z54w1rk54c5sf3wvjg1sjpin0pj6j8j42g4a2zjkvvi5bva"; depends=[hash R_utils]; }; + seq2pathway = derive2 { name="seq2pathway"; version="1.36.0"; sha256="0l1a53m4gjbgf6f53nndzdxldvi0j7xawd7m05wr23v64qd8a0ng"; depends=[biomaRt GenomicRanges GSA nnet seq2pathway_data WGCNA]; }; + seqArchR = derive2 { name="seqArchR"; version="1.8.0"; sha256="0q0ip73hvjq2j39mznd980fyvbwm9yb4ihk8yihv97i8h559ml9w"; depends=[BiocParallel Biostrings cli cluster cvTools fpc ggplot2 ggseqlogo MASS Matrix matrixStats prettyunits reshape2 reticulate]; }; + seqArchRplus = derive2 { name="seqArchRplus"; version="1.4.0"; sha256="0wk87l3346v6fm77pywrwcfhwbvswkrxv79809c0wycn84qlqd0p"; depends=[BiocParallel Biostrings BSgenome ChIPseeker cli clusterProfiler cowplot factoextra GenomeInfoDb GenomicRanges ggimage ggplot2 gridExtra heatmaps IRanges magick RColorBrewer S4Vectors scales seqArchR seqPattern]; }; + seqCAT = derive2 { name="seqCAT"; version="1.26.0"; sha256="1b9y45src6yfz8fmiihp6p2s76gz1nva5swnf8fbar4mranfwi73"; depends=[dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges rlang rtracklayer S4Vectors scales SummarizedExperiment tidyr VariantAnnotation]; }; + seqLogo = derive2 { name="seqLogo"; version="1.70.0"; sha256="154c3g4i6snsi8vkwjw4d8lyr3372d6vyw237nslw1y5n837yzir"; depends=[]; }; + seqPattern = derive2 { name="seqPattern"; version="1.36.0"; sha256="0iv0dhs1z8i0jglh1iw6ypzh6qslnn5xly2kjfxaxk9cggnjb5h6"; depends=[Biostrings GenomicRanges IRanges KernSmooth plotrix]; }; + seqTools = derive2 { name="seqTools"; version="1.38.0"; sha256="0sc2siflk12dnmmqsb0gfbncyh5w6cv58dba304ig7rg3vsk3277"; depends=[zlibbioc]; }; + seqcombo = derive2 { name="seqcombo"; version="1.26.0"; sha256="119wpz4rl5fyhc60myaw9d498n19pshnwwrmxkqx8pnqz9g6jjpq"; depends=[ggplot2 igraph yulab_utils]; }; + seqsetvis = derive2 { name="seqsetvis"; version="1.24.0"; sha256="1aazar9k36hwlx9fq6iyd7f6g764nih9f0phl0sla7gizrmpwsms"; depends=[cowplot data_table eulerr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 ggplotify IRanges limma pbapply pbmcapply png RColorBrewer Rsamtools rtracklayer S4Vectors scales UpSetR]; }; + sesame = derive2 { name="sesame"; version="1.22.1"; sha256="07c7g493fiv13hxmfki1s450rganmyiwvdjhz6aqrbi2b9w08w4n"; depends=[BiocFileCache BiocParallel dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges MASS preprocessCore readr reshape2 S4Vectors sesameData stringr SummarizedExperiment tibble wheatmap]; }; + sevenC = derive2 { name="sevenC"; version="1.24.0"; sha256="0x1r6zbwl6shhzf2xc7lp06dvlhqhgh70i71fwn25lndwyhkw280"; depends=[BiocGenerics boot data_table GenomeInfoDb GenomicRanges InteractionSet IRanges purrr readr rtracklayer S4Vectors]; }; + sevenbridges = derive2 { name="sevenbridges"; version="1.34.0"; sha256="0vy7vz87z371q2plhxkp5src6la6hj1w7bd4xkqbm3nmym2p32pb"; depends=[curl data_table docopt httr jsonlite objectProperties S4Vectors stringr uuid yaml]; }; + shiny_gosling = derive2 { name="shiny.gosling"; version="1.0.1"; sha256="1dig8hv7pw3p6ra1z76mg7sfbvdrdaprsix9i60503sriqs3arv2"; depends=[digest fs htmltools jsonlite rjson rlang shiny shiny_react]; }; + shinyMethyl = derive2 { name="shinyMethyl"; version="1.40.0"; sha256="15r9x1fqladjviyisbhr8zff0a6g9kvbvx72xcp3bfadp3wpygds"; depends=[Biobase BiocGenerics htmltools MatrixGenerics minfi RColorBrewer shiny]; }; + shinyepico = derive2 { name="shinyepico"; version="1.12.0"; sha256="0k6h2n8dy66k1vl5mrag45z5knhgn9xbim5b0nbrzh9pwi687nc1"; depends=[data_table doParallel dplyr DT foreach GenomicRanges ggplot2 gplots heatmaply limma minfi plotly reshape2 rlang rmarkdown rtracklayer shiny shinycssloaders shinyjs shinythemes shinyWidgets statmod tidyr zip]; }; + sigFeature = derive2 { name="sigFeature"; version="1.22.0"; sha256="0hgdzjlxxsxmrjrdlzabssdisn1rmi6h9nd37gid4dbr8xd1ibyh"; depends=[BiocParallel biocViews e1071 Matrix nlme openxlsx pheatmap RColorBrewer SparseM SummarizedExperiment]; }; + siggenes = derive2 { name="siggenes"; version="1.78.0"; sha256="0j4nhdq82dzr19x5w4w4l97clra0z1kk6n24x56hrrj0xlm2cgnm"; depends=[Biobase multtest scrime]; }; + sights = derive2 { name="sights"; version="1.30.0"; sha256="0kr52ng79wz6rh0rhk5kmjskn04xr89h14bdhryyzkhq80v0c2k8"; depends=[ggplot2 lattice MASS qvalue reshape2]; }; + signatureSearch = derive2 { name="signatureSearch"; version="1.18.0"; sha256="1b32n67f5c804xxbpwxpykjhakixzf5zd1zbgwj976lvdb2adl34"; depends=[AnnotationDbi BiocGenerics BiocParallel clusterProfiler data_table DelayedArray DOSE dplyr ExperimentHub fastmatch fgsea ggplot2 GSEABase HDF5Array magrittr Matrix org_Hs_eg_db qvalue Rcpp reactome_db readr reshape2 rhdf5 RSQLite scales SummarizedExperiment tibble visNetwork]; }; + signeR = derive2 { name="signeR"; version="2.6.0"; sha256="0jc9z48sgzjgxdidp9qhn4ccnx7jjlj0xnfrwajh0xq0ai1vnqb6"; depends=[ada BiocFileCache BiocGenerics Biostrings BSgenome bsplus class clue cowplot dplyr DT e1071 future future_apply GenomeInfoDb GenomicRanges ggplot2 ggpubr glmnet IRanges kknn listenv magrittr MASS maxstat nloptr NMF pheatmap PMCMRplus ppclust pROC proxy pvclust randomForest RColorBrewer Rcpp RcppArmadillo readr reshape2 rtracklayer scales shiny shinycssloaders shinydashboard shinyWidgets survival survivalAnalysis survminer tibble tidyr VariantAnnotation VGAM]; }; + signifinder = derive2 { name="signifinder"; version="1.6.0"; sha256="0r6acaqk7zaryy8ddpfischw08b6sml3cydrw8v9wys0rfv207pb"; depends=[AnnotationDbi BiocGenerics ComplexHeatmap consensusOV cowplot DGEobj_utils dplyr ensembldb ggplot2 ggridges GSVA IRanges magrittr matrixStats maxstat openair org_Hs_eg_db patchwork RColorBrewer sparrow SpatialExperiment SummarizedExperiment survival survminer TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene viridis]; }; + sigsquared = derive2 { name="sigsquared"; version="1.36.0"; sha256="19z9jfiacm4idh4638vk358jrl8zkg6jay7r07hkqpc3m6i0ysa0"; depends=[Biobase survival]; }; + simPIC = derive2 { name="simPIC"; version="1.0.0"; sha256="0qspzkpdfpya2hkj1lry68cybcsscw9xj5ycpg87xg38n3jyqcbm"; depends=[actuar BiocGenerics checkmate fitdistrplus Matrix matrixStats rlang S4Vectors scales scuttle SingleCellExperiment SummarizedExperiment]; }; + similaRpeak = derive2 { name="similaRpeak"; version="1.36.0"; sha256="12im06jfjy3b00bga1sskxn15b1bsbhybsqi8lw9pgwx2hmrf4hb"; depends=[R6]; }; + simona = derive2 { name="simona"; version="1.2.0"; sha256="04ynhnkb9qnniyvavfylg010pyry843362pjcw94kw9bwnklscy5"; depends=[circlize ComplexHeatmap GetoptLong GlobalOptions igraph matrixStats Polychrome Rcpp S4Vectors shiny xml2]; }; + simpleSeg = derive2 { name="simpleSeg"; version="1.6.1"; sha256="0rmd9kclh6x9gxqncw25563c4vh2xk206iia0qc058w9lbzqyp5f"; depends=[BiocParallel cytomapper EBImage S4Vectors spatstat_geom SummarizedExperiment terra]; }; + simplifyEnrichment = derive2 { name="simplifyEnrichment"; version="1.14.0"; sha256="1031rkl2gcgx4k1biz4bc38hfq7r6diqk48769jhii0r06ablrhi"; depends=[AnnotationDbi BiocGenerics circlize clue cluster colorspace ComplexHeatmap digest GetoptLong GlobalOptions GO_db GOSemSim Matrix org_Hs_eg_db proxyC slam tm]; }; + sincell = derive2 { name="sincell"; version="1.36.0"; sha256="1028mdjjxbnw5fzsdyjjgy7v6yhslhhm7053q3889yqamw0l82fg"; depends=[cluster entropy fastICA fields ggplot2 igraph MASS proxy Rcpp reshape2 Rtsne scatterplot3d statmod TSP]; }; + single = derive2 { name="single"; version="1.7.0"; sha256="0h7h9m4xr65nayr707jvjnbic1q4z0hsghw5i3pfpz2n6p9pb8s8"; depends=[BiocGenerics Biostrings dplyr GenomicAlignments IRanges reshape2 rlang Rsamtools stringr tidyr]; }; + singleCellTK = derive2 { name="singleCellTK"; version="2.14.0"; sha256="06qpdl1k5c94rsnbnb4vkml1sahvav3pkr71hfkqikyscbydnay4"; depends=[anndata AnnotationHub ape batchelor Biobase BiocParallel celda celldex circlize cluster colorspace colourpicker ComplexHeatmap cowplot data_table DelayedArray DelayedMatrixStats DESeq2 dplyr DropletUtils DT eds enrichR ensembldb ExperimentHub fields ggplot2 ggplotify ggrepel ggtree gridExtra GSEABase GSVA GSVAdata igraph KernSmooth limma magrittr MAST Matrix matrixStats metap msigdbr multtest plotly plyr R_utils reshape2 reticulate rlang rmarkdown ROCR Rtsne S4Vectors scater scDblFinder scds scMerge scran scRNAseq scuttle Seurat shiny shinyalert shinycssloaders shinyjs SingleCellExperiment SingleR SoupX SummarizedExperiment sva TENxPBMCData tibble TrajectoryUtils TSCAN tximport VAM withr yaml zellkonverter zinbwave]; }; + singscore = derive2 { name="singscore"; version="1.24.0"; sha256="12avzrc16mxz7v8jp4rxz5ia6008rjcja1h3hd0n60z644w9cng2"; depends=[Biobase BiocParallel edgeR ggplot2 ggrepel GSEABase magrittr matrixStats plotly plyr RColorBrewer reshape reshape2 S4Vectors SummarizedExperiment tidyr]; }; + sitadela = derive2 { name="sitadela"; version="1.12.0"; sha256="1ynq19116z228cakznkpxd7msqxbvbgax2k6rk0wh9xksi6qzkpg"; depends=[Biobase BiocGenerics biomaRt Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools RSQLite rtracklayer S4Vectors txdbmaker]; }; + sitePath = derive2 { name="sitePath"; version="1.20.0"; sha256="10g25has168cj7xjpn0q3da9rm7dxg6n2ysb8yc974gxqkabhzjh"; depends=[ape aplot ggplot2 ggrepel ggtree gridExtra RColorBrewer Rcpp seqinr tidytree]; }; + sizepower = derive2 { name="sizepower"; version="1.74.0"; sha256="0qqxvyd3kya0rjip4l41cmv3b9q7a2nb4l5hny591qr703vx31bq"; depends=[]; }; + sketchR = derive2 { name="sketchR"; version="1.0.0"; sha256="0jsv2rizfh72hrk9jrlhgl36cksa97858h7w57fkihq2hq155n67"; depends=[basilisk Biobase DelayedArray dplyr ggplot2 reticulate rlang scales]; }; + skewr = derive2 { name="skewr"; version="1.36.0"; sha256="1hh0519pqv6lq21plph7sy88918np12g7aw542sfblm81ma4p4qv"; depends=[IlluminaHumanMethylation450kmanifest methylumi minfi mixsmsn RColorBrewer S4Vectors wateRmelon]; }; + slalom = derive2 { name="slalom"; version="1.26.0"; sha256="0km062qb7k7g18zz03nr6m7nigzpbxkasgirc4igslz4sfcldd9x"; depends=[BH ggplot2 GSEABase Rcpp RcppArmadillo rsvd SingleCellExperiment SummarizedExperiment]; }; + slingshot = derive2 { name="slingshot"; version="2.12.0"; sha256="055dylajbn94khi0829qhxx0lbn1pvh30xw09gjn1jvxsgzj49nc"; depends=[igraph matrixStats princurve S4Vectors SingleCellExperiment SummarizedExperiment TrajectoryUtils]; }; + smartid = derive2 { name="smartid"; version="1.0.2"; sha256="1bm8g8n3xifc2dg1d9vpw79vpwssa9q6ssvzyf77gp24zp2r734i"; depends=[dplyr ggplot2 Matrix mclust mixtools sparseMatrixStats SummarizedExperiment tidyr]; }; + smoothclust = derive2 { name="smoothclust"; version="1.0.0"; sha256="17mcfjxsgdvignrx576v97iwapmkfc4my8pvm6b2y1w7pibilx65"; depends=[sparseMatrixStats SpatialExperiment spdep SummarizedExperiment]; }; + snapcount = derive2 { name="snapcount"; version="1.16.0"; sha256="1hjd6xdwgz2qal6scpldwpdqlrbgap45bq2h599df6hgvrdym3l7"; depends=[assertthat data_table GenomicRanges httr IRanges jsonlite magrittr Matrix purrr R6 rlang stringr SummarizedExperiment]; }; + snifter = derive2 { name="snifter"; version="1.14.0"; sha256="1rmg6dq7sm7aisjrli8ya1wx2b0y0vngf5zksy1x77v6c5mk4b72"; depends=[assertthat basilisk irlba reticulate]; }; + snm = derive2 { name="snm"; version="1.52.0"; sha256="1xihnp2kvgj4lkdbf8l0km2s06j0zqpf91946riirbyk6iq3igrn"; depends=[corpcor lme4]; }; + snpStats = derive2 { name="snpStats"; version="1.54.0"; sha256="160pl3dy7v89i90x262hxqgipas4pyim600l6m50g3c03vm5in03"; depends=[BiocGenerics Matrix survival zlibbioc]; }; + soGGi = derive2 { name="soGGi"; version="1.36.0"; sha256="0z995iyffzglc26pava4icxl315b077983lxvaldz5xkyhgvgpz7"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + spaSim = derive2 { name="spaSim"; version="1.6.0"; sha256="1lac621ss7qhfrabyn3nsmgiif4bcgwrgzs1xvbvf4lvwcy7ychm"; depends=[dplyr ggplot2 RANN SpatialExperiment spatstat_geom spatstat_random SummarizedExperiment]; }; + sparrow = derive2 { name="sparrow"; version="1.10.1"; sha256="0vd18ws47zhx87bi35lmbh9wkp6s6d5nd9x77gd7fh24ni5z338s"; depends=[babelgene BiocGenerics BiocParallel BiocSet checkmate circlize ComplexHeatmap data_table DelayedMatrixStats edgeR ggplot2 GSEABase irlba limma Matrix plotly viridis]; }; + sparseMatrixStats = derive2 { name="sparseMatrixStats"; version="1.16.0"; sha256="04hk9r6sh83dyxm2j7jdcj0m4g74ln218j21rs71c2gg6mrkmlgf"; depends=[Matrix MatrixGenerics matrixStats Rcpp]; }; + sparsenetgls = derive2 { name="sparsenetgls"; version="1.22.0"; sha256="1x8qzqsr2rzx6683lmzw5ia21853l7gj3m5jkx0r8azmjk4r6kqb"; depends=[glmnet huge MASS Matrix]; }; + spatialDE = derive2 { name="spatialDE"; version="1.10.0"; sha256="02npzs4vmjgc7bmv4rmmnz82slqcyrsq4y7wqapm30m7slhzm11g"; depends=[basilisk checkmate ggplot2 ggrepel gridExtra Matrix reticulate scales SpatialExperiment SummarizedExperiment]; }; + spatialHeatmap = derive2 { name="spatialHeatmap"; version="2.10.0"; sha256="13f6q8gvwnq5saj6n90dgyhc8y3rl6m1vcc3z3zz08i469d948vq"; depends=[data_table dplyr edgeR genefilter ggplot2 ggplotify gplots gridExtra grImport igraph Matrix reshape2 rsvg S4Vectors scater scran scuttle shiny shinydashboard SingleCellExperiment spsComps SummarizedExperiment tibble xml2]; }; + spatzie = derive2 { name="spatzie"; version="1.10.0"; sha256="1jii3viq7ck1clkr59yafnh5a4pblskd77i1i3gxs7fpvl8ab7qb"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicFeatures GenomicInteractions GenomicRanges ggplot2 IRanges MatrixGenerics matrixStats motifmatchr S4Vectors SummarizedExperiment TFBSTools]; }; + specL = derive2 { name="specL"; version="1.38.0"; sha256="0klg19h1ijwd9f7pary77zn52mp8ryzvhv6g3h5xg8yjv1kl9m7r"; depends=[DBI protViz RSQLite seqinr]; }; + speckle = derive2 { name="speckle"; version="1.4.0"; sha256="1m7fl9l20f65w5il3jhj930i71kb1bvsz0iqb7yi1nczjx1b6hcw"; depends=[edgeR ggplot2 limma Seurat SingleCellExperiment]; }; + spicyR = derive2 { name="spicyR"; version="1.16.1"; sha256="03bmjr4vbma5ynj773b364vb05vf06fyzvbq75qi7mczjyh4kckw"; depends=[BiocParallel ClassifyR cli concaveman data_table dplyr ggforce ggplot2 lmerTest magrittr pheatmap rlang S4Vectors scam SingleCellExperiment SpatialExperiment spatstat_explore spatstat_geom SummarizedExperiment tibble tidyr]; }; + spikeLI = derive2 { name="spikeLI"; version="2.64.0"; sha256="1n8dbfaraal941djg1a065zdqsw6dacw92kj0615mq520wviwwqi"; depends=[]; }; + spiky = derive2 { name="spiky"; version="1.10.0"; sha256="1cwvdqa4zy17nk6d04kg6rrsd6rk4f5nrg58pf882jn44rjfl49i"; depends=[bamlss Biostrings BlandAltmanLeh BSgenome GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges Rsamtools S4Vectors scales]; }; + spillR = derive2 { name="spillR"; version="1.0.0"; sha256="1pqb9n0rvjx8wdw4vjfmi9m2d5lf6xddygpf1grab3yhkrn9akw8"; depends=[CATALYST dplyr ggplot2 S4Vectors spatstat_geom SummarizedExperiment tibble tidyr tidyselect]; }; + spkTools = derive2 { name="spkTools"; version="1.60.0"; sha256="1q6vhhdfh5xwpkwfcbjlbv9s8rd5mzn98xqcns7ix5d3rcqk5ixk"; depends=[Biobase gtools RColorBrewer]; }; + splatter = derive2 { name="splatter"; version="1.28.0"; sha256="1drifr04nd8x40z6v0ig60l2zcm289kmxlmdy8siczn90xzy8cm7"; depends=[BiocGenerics BiocParallel checkmate crayon edgeR fitdistrplus locfit matrixStats rlang S4Vectors scuttle SingleCellExperiment SummarizedExperiment withr]; }; + splineTimeR = derive2 { name="splineTimeR"; version="1.32.0"; sha256="0y4sydqmwpj5jwalhbf1zs6mqk447c7f22a5qy9pj8sqblh042rn"; depends=[Biobase FIs GeneNet GSEABase gtools igraph limma longitudinal]; }; + splots = derive2 { name="splots"; version="1.70.0"; sha256="0dr0d1c5v45vmfdpm6hkg4dbjx6c4y9hadpra8ym5bcmlsb14xaa"; depends=[RColorBrewer]; }; + spoon = derive2 { name="spoon"; version="1.0.0"; sha256="1ygrb534nlsxckbc61y5s3rjc4cpmf265y5a48charjv9y3ahw19"; depends=[BiocParallel BRISC Matrix nnSVG scuttle SpatialExperiment SummarizedExperiment]; }; + spqn = derive2 { name="spqn"; version="1.16.0"; sha256="0477rs2wq9319zj1pm7j96inhd38sqs85wvj06r47g2k77blcz87"; depends=[BiocGenerics ggplot2 ggridges matrixStats SummarizedExperiment]; }; + srnadiff = derive2 { name="srnadiff"; version="1.24.0"; sha256="0gr754qb5gc0lh1r513yrfrys7q13a0kmbzmbx5m0p7wwp508mdg"; depends=[BiocManager BiocParallel BiocStyle DESeq2 devtools edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + ssPATHS = derive2 { name="ssPATHS"; version="1.18.0"; sha256="0h2hs6snnh9kzqna94ndp3gk4bkldsxrg67fy6gx7d15agjl9y2s"; depends=[dml MESS ROCR SummarizedExperiment]; }; + sscu = derive2 { name="sscu"; version="2.34.0"; sha256="0ym9c6r2ny5j9lzcccllq29jl4g1021n5n0l8z51lgkypaq5zlik"; depends=[BiocGenerics Biostrings seqinr]; }; + ssize = derive2 { name="ssize"; version="1.78.0"; sha256="078mw9mb39liw4jalivgm1giib7pizizxyzmy4gzq8wb35psb39m"; depends=[gdata xtable]; }; + ssrch = derive2 { name="ssrch"; version="1.20.0"; sha256="16pc861c3ljrnagjc02pksymv24kp18380afqhz2isif0za8kl6d"; depends=[DT shiny]; }; + ssviz = derive2 { name="ssviz"; version="1.38.0"; sha256="0m5jh45v58f92m4ib7b1fy7gpixpvgm65gx2sw1qmx1qihp4hkrb"; depends=[Biostrings ggplot2 RColorBrewer reshape Rsamtools]; }; + stJoincount = derive2 { name="stJoincount"; version="1.6.0"; sha256="1i8bkygxxl3cq8zjpfslakib1knivyc4wfil1sa4s0jcj4iyhlhx"; depends=[dplyr ggplot2 magrittr pheatmap raster Seurat sp SpatialExperiment spdep SummarizedExperiment]; }; + staRank = derive2 { name="staRank"; version="1.46.0"; sha256="13z24si93h17hdiagjg26kv07bzyfl54iymb1jd7yn47924dr3n3"; depends=[cellHTS2]; }; + stageR = derive2 { name="stageR"; version="1.26.0"; sha256="0ayjwv2i9q8dzq5pzhyzkxzkz9ycka2v6ccvq5y9cg7x0mw4qvbh"; depends=[SummarizedExperiment]; }; + standR = derive2 { name="standR"; version="1.8.0"; sha256="0lnggcppcgd5k07yx5ig7gjyj7bkwk7mvs9l785mlr1wgmqz4vm0"; depends=[Biobase BiocGenerics dplyr edgeR ggalluvial ggplot2 limma mclustcomp patchwork readr rlang ruv RUVSeq S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment tibble tidyr]; }; + statTarget = derive2 { name="statTarget"; version="1.34.0"; sha256="0p89j6isdyy7zlniqd42s7y50sjyd7a9fpg3hwi92ssvv77zdd4c"; depends=[impute pdist pls plyr randomForest ROC rrcov]; }; + stepNorm = derive2 { name="stepNorm"; version="1.76.0"; sha256="18v5hqcwnbzw8kwq9ahia36ikr3fd1cgwvx0rj32qbs66kr9phhz"; depends=[marray MASS]; }; + strandCheckR = derive2 { name="strandCheckR"; version="1.22.0"; sha256="05r9d87y158pbnakqcli94nbwfvl72bsl1wbmbjyhk3cp9r1si2d"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges magrittr reshape2 rmarkdown Rsamtools S4Vectors stringr TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + struct = derive2 { name="struct"; version="1.16.0"; sha256="086fjmhmywi8ciycnz29fgkjwmxws2d130fvgwmx504gf7l841lk"; depends=[knitr ontologyIndex rols S4Vectors SummarizedExperiment]; }; + structToolbox = derive2 { name="structToolbox"; version="1.16.0"; sha256="0a9hvwj6cgbs61m9vjfm704kp42mj05shjxnr79j8irfbx87q8w4"; depends=[ggplot2 ggthemes gridExtra scales sp struct]; }; + subSeq = derive2 { name="subSeq"; version="1.34.0"; sha256="1pdjw0balc7lx92azfxxl80h2lkqhk5sx94cfzgw3cwb8s2abwka"; depends=[Biobase data_table digest dplyr ggplot2 magrittr qvalue tidyr]; }; + supersigs = derive2 { name="supersigs"; version="1.12.0"; sha256="00rnd7h7xrbpr5jqz7l03pk6rlyqfcmkyrxpjwayz9gj2yc87lk3"; depends=[assertthat Biostrings caret dplyr rlang rsample SummarizedExperiment tidyr]; }; + supraHex = derive2 { name="supraHex"; version="1.42.0"; sha256="10qfvwbz5cbxvxbdmbc29jfp6apza4z70p4b9nfwgs4y95c11p7l"; depends=[ape dplyr hexbin igraph magrittr MASS purrr readr stringr tibble tidyr]; }; + surfaltr = derive2 { name="surfaltr"; version="1.10.0"; sha256="1i7ssmnnv81x5nb63sbk07mkirb99bsn9kyy59n8ib03akygv2mz"; depends=[biomaRt Biostrings dplyr ggplot2 httr msa protr readr seqinr stringr testthat xml2]; }; + survcomp = derive2 { name="survcomp"; version="1.54.0"; sha256="090dl580cwicn3px1khkhcix25snig0k7phb7z3nzmrbxmp82ygc"; depends=[bootstrap ipred KernSmooth prodlim rmeta SuppDists survival survivalROC]; }; + survtype = derive2 { name="survtype"; version="1.20.0"; sha256="0pyyzkxqaa8xbrap1d2ppd4g4i4zxr8frjw0mlq8hw9gf1n94k0l"; depends=[clustvarsel pheatmap SummarizedExperiment survival survminer]; }; + sva = derive2 { name="sva"; version="3.52.0"; sha256="07iq894mf5d66cxjl283pcvj1frj56pb15z984d4svk6f5cacg3z"; depends=[BiocParallel edgeR genefilter limma matrixStats mgcv]; }; + svaNUMT = derive2 { name="svaNUMT"; version="1.10.0"; sha256="15159bxq26w80nc160rk5k48435h6snxmsmynfjiaq3kzv5143pd"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges pwalign rlang rtracklayer S4Vectors stringr StructuralVariantAnnotation VariantAnnotation]; }; + svaRetro = derive2 { name="svaRetro"; version="1.10.0"; sha256="03scsdy5pypir0jqgj38y5hnj82sh21gip5xd8dbqjk9ryb75ays"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges rlang rtracklayer S4Vectors stringr StructuralVariantAnnotation VariantAnnotation]; }; + swfdr = derive2 { name="swfdr"; version="1.30.0"; sha256="0ld015l7sxl1rmn1p6wi7k8wk3p8y7qad7klb47y23mhwfwhn7cs"; depends=[]; }; + switchBox = derive2 { name="switchBox"; version="1.40.0"; sha256="03535j0hgdgpdks9hc10zkq7kyr4zp8xdp963qny5c4aa4naz7pi"; depends=[gplots pROC]; }; + switchde = derive2 { name="switchde"; version="1.30.0"; sha256="033xpkivywvk4rg1gqr0drrhwgp58nlgr3in65c0fxlwd1jd6kpj"; depends=[dplyr ggplot2 SingleCellExperiment SummarizedExperiment]; }; + synapsis = derive2 { name="synapsis"; version="1.10.0"; sha256="0w2pagkvnipz6wmz9yhpysiy7ydc7w8cqjifsqzdh771b3ccw0kl"; depends=[EBImage]; }; + synapter = derive2 { name="synapter"; version="2.28.0"; sha256="1imhap1ny0x687qh9s1q9m978hwhhkci0j8i3qfwrvn3ykijlsa7"; depends=[Biobase Biostrings cleaver lattice MSnbase multtest qvalue RColorBrewer readr rmarkdown]; }; + synergyfinder = derive2 { name="synergyfinder"; version="3.12.0"; sha256="02d9615k8fl9bb7hd6f5vz11k9aard8zs880siac2s23pwzivjwn"; depends=[dplyr drc furrr future ggforce ggplot2 ggrepel gstat kriging lattice magrittr metR mice nleqslv pbapply plotly purrr reshape2 sp SpatialExtremes stringr tidyr tidyverse vegan]; }; + synlet = derive2 { name="synlet"; version="2.4.0"; sha256="0nfqm2qfavn71k5dhz6x2958yplasnbvjc6mqzh4i237x03184g4"; depends=[data_table ggplot2 magrittr patchwork RankProd RColorBrewer]; }; + syntenet = derive2 { name="syntenet"; version="1.6.0"; sha256="1220hbkmg10ly0i5m6wnqnsa6m2f2xgs85798y9mlcqwxrp5ih35"; depends=[BiocParallel Biostrings GenomicRanges ggnetwork ggplot2 igraph intergraph networkD3 pheatmap RColorBrewer Rcpp rlang rtracklayer testthat]; }; + systemPipeR = derive2 { name="systemPipeR"; version="2.10.0"; sha256="13xxcqy5hhy45zglv6gc86ndmisfkjq4dg55x2j1kw3jqha1brnx"; depends=[BiocGenerics Biostrings crayon GenomicRanges ggplot2 htmlwidgets magrittr Rsamtools S4Vectors ShortRead stringr SummarizedExperiment yaml]; }; + systemPipeShiny = derive2 { name="systemPipeShiny"; version="1.14.0"; sha256="14wgamxg2jpj3xjlna9x5rd3kpndhxs20gh84acix3pa3ppr8xgf"; depends=[assertthat bsplus crayon dplyr drawer DT ggplot2 glue htmltools magrittr openssl plotly R6 rlang RSQLite rstudioapi shiny shinyAce shinydashboard shinydashboardPlus shinyFiles shinyjqui shinyjs shinytoastr shinyWidgets spsComps spsUtil stringr styler tibble vroom yaml]; }; + systemPipeTools = derive2 { name="systemPipeTools"; version="1.12.0"; sha256="08r0dglqpr638pbssr3l3xcly7mhj0jsq5rrzdnqh5sg4wz11gyj"; depends=[ape DESeq2 dplyr DT GGally ggplot2 ggrepel ggtree glmpca magrittr pheatmap plotly Rtsne SummarizedExperiment tibble]; }; + tLOH = derive2 { name="tLOH"; version="1.12.0"; sha256="0r8a0srff8y5ap2zz4kk6302gkb69bgylxggnz704zi3yzvyklv1"; depends=[bestNormalize data_table depmixS4 dplyr GenomicRanges ggplot2 MatrixGenerics naniar purrr scales stringr VariantAnnotation]; }; + tRNA = derive2 { name="tRNA"; version="1.22.0"; sha256="0dg4s5kxsdh2j8smqi8vm7yncy9kb79sj8xlvf4wgf3aljarms21"; depends=[BiocGenerics Biostrings GenomicRanges ggplot2 IRanges Modstrings S4Vectors scales stringr Structstrings XVector]; }; + tRNAdbImport = derive2 { name="tRNAdbImport"; version="1.22.0"; sha256="0yvgxxf5d5mh91cmbba66krj6jz5gl1qkgjck9310k4mk7pjfww3"; depends=[Biostrings GenomicRanges httr2 IRanges Modstrings S4Vectors stringr Structstrings tRNA xml2]; }; + tRNAscanImport = derive2 { name="tRNAscanImport"; version="1.24.0"; sha256="12wn5sdq1miimn31ismzs2w06q3l66l774dbfndw8bx3awhrf7g1"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors stringr Structstrings tRNA XVector]; }; + tRanslatome = derive2 { name="tRanslatome"; version="1.42.0"; sha256="0xnr7a7cm7lcvyipjj6p4347yqykpfghz37qxyam5ixplfwlh1cg"; depends=[anota Biobase DESeq2 edgeR GOSemSim gplots Heatplus limma org_Hs_eg_db plotrix RankProd topGO]; }; + tadar = derive2 { name="tadar"; version="1.2.0"; sha256="12jmrnaqf1hkdjw2qvxjkb2y2860ck9a5957h44nkhxf75lv35vb"; depends=[BiocGenerics GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges MatrixGenerics rlang Rsamtools S4Vectors VariantAnnotation]; }; + tanggle = derive2 { name="tanggle"; version="1.10.0"; sha256="0dcy2bvim02x9wqd6fxs7562nl8849h13n2q16pcbc67ljhss27m"; depends=[ape ggplot2 ggtree phangorn]; }; + target = derive2 { name="target"; version="1.18.0"; sha256="1crqxj8wk66h2jvxnmw5rhdsdfhkd59d2pxw1lf05w7dkd495zfr"; depends=[BiocGenerics GenomicRanges IRanges matrixStats shiny]; }; + ternarynet = derive2 { name="ternarynet"; version="1.48.0"; sha256="1f431kkyhazw4kxnfhhk0jb9gkfp7llpm054rv44if328bbi931h"; depends=[BiocParallel igraph]; }; + terraTCGAdata = derive2 { name="terraTCGAdata"; version="1.8.0"; sha256="18i933ndja1pa4iql96fvx2brjmcvvirlp048hjxvkapm0bhsm19"; depends=[AnVIL BiocFileCache dplyr GenomicRanges MultiAssayExperiment RaggedExperiment readr S4Vectors TCGAutils tidyr]; }; + tidyCoverage = derive2 { name="tidyCoverage"; version="1.0.0"; sha256="150q5qwifni2d2jvx1k3c0cq5n2k1s33yps8v5d6ksa3qs510p4s"; depends=[BiocIO BiocParallel cli dplyr fansi GenomeInfoDb GenomicRanges IRanges pillar purrr rlang rtracklayer S4Vectors SummarizedExperiment tidyr vctrs]; }; + tidySingleCellExperiment = derive2 { name="tidySingleCellExperiment"; version="1.14.0"; sha256="1rvc0576ajxx7njyiyh2ql85an4dn9v8v4q7g8gfdgd9jg5v4hmz"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr Matrix pillar pkgconfig purrr rlang S4Vectors SingleCellExperiment stringr SummarizedExperiment tibble tidyr tidyselect ttservice vctrs]; }; + tidySpatialExperiment = derive2 { name="tidySpatialExperiment"; version="1.0.0"; sha256="0a2bramm53dvl7qib18z7s8zrfjprkrg6zzj5q7z4jf5smj7szzf"; depends=[BiocGenerics cli dplyr fansi ggplot2 lifecycle magrittr Matrix pillar pkgconfig purrr rlang S4Vectors SingleCellExperiment SpatialExperiment stringr SummarizedExperiment tibble tidyr tidyselect tidySingleCellExperiment ttservice vctrs]; }; + tidySummarizedExperiment = derive2 { name="tidySummarizedExperiment"; version="1.14.0"; sha256="0bcvna28shr27pdzi1n2g6bldqrakkwn0wh7ld39wbn439awshr9"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr pillar pkgconfig purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect ttservice vctrs]; }; + tidybulk = derive2 { name="tidybulk"; version="1.16.0"; sha256="1ij4x2fqcpdkdl62kwjhk3w19m7vwq8m3bglhsxz7pkzy49cfifx"; depends=[crayon dplyr GenomicRanges lifecycle magrittr Matrix preprocessCore purrr readr rlang S4Vectors scales stringi stringr SummarizedExperiment tibble tidyr tidyselect ttservice]; }; + tidyomics = derive2 { name="tidyomics"; version="1.0.0"; sha256="08d2bkaqya090y93wg8cj36bbqbiy62p9swiz9ci9z4055sv900y"; depends=[cli nullranges plyranges purrr rlang stringr tidybulk tidyseurat tidySingleCellExperiment tidySummarizedExperiment]; }; + tigre = derive2 { name="tigre"; version="1.58.0"; sha256="1gdfiga7m4zdsr8vj8anlkj1jfdrlzhsik36jdgi4f92pyyllgwx"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; }; + tilingArray = derive2 { name="tilingArray"; version="1.82.0"; sha256="1408275gvfilc2k8sfsja8bm5fdgnblf2sf5wdd3if51qi61clb0"; depends=[affy Biobase genefilter pixmap RColorBrewer strucchange vsn]; }; + timeOmics = derive2 { name="timeOmics"; version="1.16.0"; sha256="12qxipaqmkvfb6lvbl40v9fb0vink4jgxlx9kg9kg2sd9kb7qrav"; depends=[checkmate dplyr ggplot2 ggrepel lmtest magrittr mixOmics plyr purrr stringr tibble tidyr]; }; + timecourse = derive2 { name="timecourse"; version="1.76.0"; sha256="05q6vw76hhi4frpf4vivq1jxkh99xq44vw2p5gz4zgcinsc58yql"; depends=[Biobase limma marray MASS]; }; + timescape = derive2 { name="timescape"; version="1.28.0"; sha256="1xcdx61gv0vvzdl04nfp7kbp6qxbkfmh88pvdz47jmkcy9ap8zmm"; depends=[dplyr gtools htmlwidgets jsonlite stringr]; }; + tkWidgets = derive2 { name="tkWidgets"; version="1.82.0"; sha256="0k1d5r306mbry0h7yqp246i13adxlmxl2vhwdsfgh29v8qkg1szl"; depends=[DynDoc widgetTools]; }; + tomoda = derive2 { name="tomoda"; version="1.14.0"; sha256="0cx4153sknl0prpdm12y6n44kg10ib8b7qk3102pvgv9mz4xgrbv"; depends=[ggplot2 ggrepel RColorBrewer reshape2 Rtsne SummarizedExperiment umap]; }; + tomoseqr = derive2 { name="tomoseqr"; version="1.8.0"; sha256="14x665zaljr448gdb84d0y1hlqih7n9z2dy052y4ay22l10f8886"; depends=[animation BiocFileCache dplyr ggplot2 plotly purrr readr shiny stringr tibble]; }; + topGO = derive2 { name="topGO"; version="2.56.0"; sha256="0ly4rai3na88dnfizsi60r6py0qmf0pw95b0hprfkvzpjyd72p75"; depends=[AnnotationDbi Biobase BiocGenerics DBI GO_db graph lattice matrixStats SparseM]; }; + topconfects = derive2 { name="topconfects"; version="1.20.0"; sha256="1jcmnxf5sazw7xg8r39m059z2vai03nr0kadd8dfcvn6cfaqmvbg"; depends=[assertthat ggplot2]; }; + topdownr = derive2 { name="topdownr"; version="1.26.0"; sha256="1axqyjlp6386shcw95mg0ljj12683ix03yk5bcxr2bqd36csfa6y"; depends=[Biobase BiocGenerics Biostrings ggplot2 Matrix MSnbase mzR ProtGenerics PSMatch S4Vectors]; }; + tpSVG = derive2 { name="tpSVG"; version="1.0.0"; sha256="135w2w6j3cgfrkfkzmmy40ii10zp32r7xjc0pg07h2gm0hdz5yj0"; depends=[BiocParallel MatrixGenerics mgcv SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + trackViewer = derive2 { name="trackViewer"; version="1.40.0"; sha256="01m0jwig3l6dfhd3w5aq4sx2krsipjg5jjxa78kalfrzrm6k05s4"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges grImport Gviz htmlwidgets igraph InteractionSet IRanges plotrix rhdf5 Rsamtools rtracklayer S4Vectors scales strawr txdbmaker]; }; + tracktables = derive2 { name="tracktables"; version="1.38.0"; sha256="1rfpb13sd2rqhxkywif58fm2l8ch664ga149y1nxwf409hbqb81w"; depends=[GenomicRanges IRanges RColorBrewer Rsamtools stringr tractor_base XML XVector]; }; + tradeSeq = derive2 { name="tradeSeq"; version="1.18.0"; sha256="1kgvvvwvj3dgb2wik3y8j44ynda94bi05vvmiwlayrypqprwi1c1"; depends=[Biobase BiocParallel edgeR ggplot2 igraph magrittr MASS Matrix matrixStats mgcv pbapply princurve RColorBrewer S4Vectors SingleCellExperiment slingshot SummarizedExperiment tibble TrajectoryUtils viridis]; }; + transcriptR = derive2 { name="transcriptR"; version="1.32.0"; sha256="1lx11dyr8q4yd57l7rj0788488amhiiahfml2m69554hk94cd46i"; depends=[BiocGenerics caret chipseq e1071 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges pROC reshape2 Rsamtools rtracklayer S4Vectors]; }; + transcriptogramer = derive2 { name="transcriptogramer"; version="1.26.0"; sha256="0n44im93a72sihivlxn5x2k3s412b91ixqamc0wlk57vw0ppycm6"; depends=[biomaRt data_table doSNOW foreach ggplot2 igraph limma progress RedeR snow tidyr topGO]; }; + transformGamPoi = derive2 { name="transformGamPoi"; version="1.10.0"; sha256="09z5d72zk6lnhjvfffpylgkk6w73wrlcasr8agy7ydy1b80cj36c"; depends=[DelayedArray glmGamPoi HDF5Array Matrix MatrixGenerics Rcpp SummarizedExperiment]; }; + transite = derive2 { name="transite"; version="1.22.0"; sha256="15r8q0j7475ccq592fiqvcxkggb8zkg6lq3zmz65jljfdggj6kn4"; depends=[BiocGenerics Biostrings dplyr GenomicRanges ggplot2 gridExtra Rcpp scales TFMPvalue]; }; + transmogR = derive2 { name="transmogR"; version="1.0.0"; sha256="1531h4i6jn25r451ndf7jjscfbzs1k7477v0cn0rrr5hay8i2z3s"; depends=[Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges rlang S4Vectors scales SummarizedExperiment VariantAnnotation]; }; + transomics2cytoscape = derive2 { name="transomics2cytoscape"; version="1.14.0"; sha256="1f7qdymlgqh4la1rhlk5s580ka8p4f8ravm19i02ndx50jlnq12q"; depends=[dplyr KEGGREST pbapply purrr RCy3 tibble]; }; + traseR = derive2 { name="traseR"; version="1.34.0"; sha256="0v1w73s4b5zs863mdb6pwr2h9wq3wsbwqxbihig3sl6vc7i5v7da"; depends=[BSgenome_Hsapiens_UCSC_hg19 GenomicRanges IRanges]; }; + traviz = derive2 { name="traviz"; version="1.10.0"; sha256="1jjdfl8xvzlr31w74j12s5pdg5b1yylg1i30n804p9mqyx11g5sc"; depends=[Biobase ggplot2 mgcv princurve RColorBrewer rgl SingleCellExperiment slingshot SummarizedExperiment viridis]; }; + treeclimbR = derive2 { name="treeclimbR"; version="1.0.0"; sha256="1ynrc06f1dh1vaa24j25naydvj4lvygcv89ssz5gv0xpmr0ydlc1"; depends=[ape diffcyt dirmult dplyr edgeR ggnewscale ggplot2 ggtree rlang S4Vectors SummarizedExperiment tibble tidyr TreeSummarizedExperiment viridis]; }; + treeio = derive2 { name="treeio"; version="1.28.0"; sha256="0xfjq13yirfz7dzzlf2m60lk8xb3qh6k5hr66ygvjnm716x3vyh1"; depends=[ape dplyr jsonlite magrittr rlang tibble tidytree yulab_utils]; }; + treekoR = derive2 { name="treekoR"; version="1.12.0"; sha256="02mzd9ay9fij2qr9dkrg72h7yw9jpjmqx4gz0hsjpb03akc1npqw"; depends=[ape data_table diffcyt dplyr edgeR ggiraph ggplot2 ggtree hopach lme4 multcomp patchwork SingleCellExperiment tidyr]; }; + tricycle = derive2 { name="tricycle"; version="1.12.0"; sha256="11928pcd8xzmll28m0ihi3rasc4w1i0fshn4bh9n2lyigkr5ayi4"; depends=[AnnotationDbi circular dplyr GenomicRanges ggnewscale ggplot2 IRanges RColorBrewer S4Vectors scater scattermore SingleCellExperiment SummarizedExperiment]; }; + trigger = derive2 { name="trigger"; version="1.50.0"; sha256="1l3ln40r45rhbw8abk8l5xqighpfy3qk17830wk34ip0jzvvshqi"; depends=[corpcor qtl qvalue sva]; }; + trio = derive2 { name="trio"; version="3.42.0"; sha256="166pnyzjrahcx0zhmclxdawyhpvr8am0da8il3wm1bs6clp7af94"; depends=[LogicReg siggenes survival]; }; + triplex = derive2 { name="triplex"; version="1.44.0"; sha256="19xvhdwik9crz6w5cjfwsvwn42wkari3d360lmjms128qn266hbx"; depends=[Biostrings GenomicRanges IRanges S4Vectors XVector]; }; + tripr = derive2 { name="tripr"; version="1.10.0"; sha256="0lh2qlqi6rxq4v5cw4qr2syyjig7iy6z3pc0d6gpr4lbhwcm50d5"; depends=[config data_table dplyr DT golem gridExtra plot3D plotly plyr RColorBrewer shiny shinyBS shinyFiles shinyjs stringdist stringr]; }; + ttgsea = derive2 { name="ttgsea"; version="1.12.0"; sha256="1j09ircbzpvx661yrsnz7b6hxgsc0snm3q6gi72hcyjc9xgx46zs"; depends=[data_table DiagrammeR keras purrr stopwords text2vec textstem tm tokenizers]; }; + tweeDEseq = derive2 { name="tweeDEseq"; version="1.50.0"; sha256="0mmrp0x64k1cd0n7qqrpr191n57hciq75aw3gvfrplcfi75xb7q3"; depends=[cqn edgeR limma MASS Rcpp]; }; + twilight = derive2 { name="twilight"; version="1.80.0"; sha256="0r5nfr5r88xyvcrlzv8cmlnq5gcf98nqn3p028zc8dffslm6cbsq"; depends=[Biobase]; }; + twoddpcr = derive2 { name="twoddpcr"; version="1.28.0"; sha256="13if809c4nxf5cprps9p9w6z1r3xxjq556315wbkyh0pw724nki0"; depends=[class ggplot2 hexbin RColorBrewer S4Vectors scales shiny]; }; + txcutr = derive2 { name="txcutr"; version="1.10.0"; sha256="165yfhmw8j91bx0x7kasxyiwdiy7yxzzjg4vlyic0bf2f3xvyn1g"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors txdbmaker]; }; + txdbmaker = derive2 { name="txdbmaker"; version="1.0.0"; sha256="099x6v4crp953jcgqipj0001kxg7gv5h0r4mmvh1cg7j69w0zd5m"; depends=[AnnotationDbi Biobase BiocGenerics BiocIO biomaRt DBI GenomeInfoDb GenomicFeatures GenomicRanges httr IRanges rjson RSQLite rtracklayer S4Vectors UCSC_utils]; }; + tximeta = derive2 { name="tximeta"; version="1.22.1"; sha256="0lmkxl7zlp6z4i32jyy914kiwacnz89jnd2kqma81mq81r389p06"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings ensembldb GenomeInfoDb GenomicFeatures GenomicRanges IRanges jsonlite Matrix S4Vectors SummarizedExperiment tibble txdbmaker tximport]; }; + tximport = derive2 { name="tximport"; version="1.32.0"; sha256="0wayib05k976wivf9xgbfz5mfvi5hmxj3wm6zw031bj4w8dkc1v6"; depends=[]; }; + uSORT = derive2 { name="uSORT"; version="1.30.0"; sha256="04k0763dykakv03gxvlwsp6qlg6lpzd5512p5rdq2v5dk19scvm1"; depends=[Biobase BiocGenerics cluster fpc gplots igraph Matrix monocle plyr RANN RSpectra VGAM]; }; + uncoverappLib = derive2 { name="uncoverappLib"; version="1.14.0"; sha256="17p2aqpg3q6yqplw2haazm1hhr6s0nwhghcvn3j9128n5pg2j58x"; depends=[BiocFileCache condformat DT EnsDb_Hsapiens_v75 EnsDb_Hsapiens_v86 GenomicRanges Gviz Homo_sapiens markdown openxlsx org_Hs_eg_db OrganismDbi processx rappdirs rlist Rsamtools S4Vectors shiny shinyBS shinycssloaders shinyjs shinyWidgets stringr TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + universalmotif = derive2 { name="universalmotif"; version="1.22.0"; sha256="1kasmib3lp68pq5f9qzh38z7gpv8hik536iz16g8a73pc6bcbmzy"; depends=[BiocGenerics Biostrings ggplot2 IRanges MASS MatrixGenerics Rcpp RcppThread rlang S4Vectors yaml]; }; + updateObject = derive2 { name="updateObject"; version="1.8.0"; sha256="151nma7yyhk8s67bqim6jn86p85zdq7hj0xvvpnsl78bacncca8c"; depends=[BiocGenerics digest S4Vectors]; }; + variancePartition = derive2 { name="variancePartition"; version="1.34.0"; sha256="00hrizpx05jfh7yrab6na10zkahm8ibrbxy4pa4dcldw65klqmn9"; depends=[aod Biobase BiocParallel corpcor fANCOVA ggplot2 gplots iterators limma lme4 lmerTest MASS Matrix matrixStats pbkrtest Rdpack remaCor reshape2 RhpcBLASctl rlang scales]; }; + vbmp = derive2 { name="vbmp"; version="1.72.0"; sha256="0a21jpvg6jjv28gx30yrvm7wsc194jsdsxh0vhgk8j9rjlmlfp2y"; depends=[]; }; + velociraptor = derive2 { name="velociraptor"; version="1.14.0"; sha256="0sr796g3hak3vv014fvibi95fqayhjdp9qj1lyd84lc84rwhzli2"; depends=[basilisk BiocGenerics BiocParallel BiocSingular DelayedArray Matrix reticulate S4Vectors scuttle SingleCellExperiment SummarizedExperiment zellkonverter]; }; + veloviz = derive2 { name="veloviz"; version="1.10.0"; sha256="0bni9ykffsa4zazycaki74xxwps40ngsrvq32bdr4anyhya2nk1v"; depends=[igraph Matrix mgcv Rcpp RSpectra]; }; + vidger = derive2 { name="vidger"; version="1.24.0"; sha256="1ladsgxqmmff7rw6w3x8jyxba4mdk7bb4f4wgimwfgvyjmygsaqr"; depends=[Biobase DESeq2 edgeR GGally ggplot2 ggrepel knitr RColorBrewer rmarkdown scales SummarizedExperiment tidyr]; }; + viper = derive2 { name="viper"; version="1.38.0"; sha256="00cl6lbi56dbd8dilg0iczca87wr3572vq7i352mgfdinlw7fcyk"; depends=[Biobase e1071 KernSmooth mixtools]; }; + vissE = derive2 { name="vissE"; version="1.12.0"; sha256="1bw74vjag4g90d2s29w5j51dd30xqp6k6x6vwb0ihrxfvadns5dx"; depends=[ggforce ggplot2 ggraph ggrepel ggwordcloud GSEABase igraph msigdb plyr RColorBrewer reshape2 scales scico textstem tidygraph tm]; }; + vsclust = derive2 { name="vsclust"; version="1.6.0"; sha256="0kb63am4aa6gmlpbczdbmxc7vwnmnnkd78ql6nizd9sfixdmiqm5"; depends=[limma matrixStats MultiAssayExperiment qvalue Rcpp shiny]; }; + vsn = derive2 { name="vsn"; version="3.72.0"; sha256="1r6cd92d4xlx4zdyy1sfaxicjf4q3arflmswpdkckkc4h9c6zf8m"; depends=[affy Biobase ggplot2 lattice limma]; }; + vtpnet = derive2 { name="vtpnet"; version="0.44.0"; sha256="1fi4yjh7nvrq9fzba771i32p6qhq3cl7c9sil1hpc9l4k9bxfdfp"; depends=[doParallel foreach GenomicRanges graph gwascat]; }; + vulcan = derive2 { name="vulcan"; version="1.26.0"; sha256="1fimj4rbrw6wy1kl6is49v33y6c1s3n9nkanpqibkgk4g3cljxfa"; depends=[Biobase caTools ChIPpeakAnno csaw DESeq2 DiffBind GenomicRanges gplots locfit S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene viper wordcloud zoo]; }; + waddR = derive2 { name="waddR"; version="1.18.0"; sha256="160v6qqcx3fn657p7blq261nqclww2wic3gp0k855d3kx4i12i5l"; depends=[arm BiocFileCache BiocParallel eva Rcpp RcppArmadillo SingleCellExperiment]; }; + wateRmelon = derive2 { name="wateRmelon"; version="2.10.0"; sha256="19zlv9aglllsjq3jcnlw994bkanjdq0ib46k7wjsig04cx4apz1v"; depends=[Biobase IlluminaHumanMethylation450kanno_ilmn12_hg19 illuminaio limma lumi matrixStats methylumi ROC]; }; + wavClusteR = derive2 { name="wavClusteR"; version="2.38.0"; sha256="0yr4jfaxs253xg5q0kds8fm97kqacx67pw1c80yx2w79v7nqskgv"; depends=[BiocGenerics Biostrings foreach GenomicFeatures GenomicRanges ggplot2 Hmisc IRanges mclust Rsamtools rtracklayer S4Vectors seqinr stringr]; }; + weaver = derive2 { name="weaver"; version="1.70.0"; sha256="08k5pkd16n9jyf45y8wh8lzk7dwkkpiai87fnrxg440qjb91pzsm"; depends=[codetools digest]; }; + webbioc = derive2 { name="webbioc"; version="1.76.0"; sha256="1ws4w2kf514adk50sjadgasm7z1xvklcb8s243m12fvlg63dia9i"; depends=[affy annaffy Biobase BiocManager gcrma multtest qvalue vsn]; }; + weitrix = derive2 { name="weitrix"; version="1.16.0"; sha256="01jp94k2qlxbci1kidx4lnxkz0bf4vaj5p31c4brcmgrzv0a1pz4"; depends=[assertthat BiocGenerics BiocParallel Ckmeans_1d_dp DelayedArray DelayedMatrixStats dplyr ggplot2 glm2 limma purrr reshape2 RhpcBLASctl rlang S4Vectors scales SummarizedExperiment topconfects]; }; + widgetTools = derive2 { name="widgetTools"; version="1.82.0"; sha256="0knszrfapndnjzv5948qbfsjamlf7g04yry7yx294l8iwvwip6qv"; depends=[]; }; + wiggleplotr = derive2 { name="wiggleplotr"; version="1.28.0"; sha256="1px7rgvaj6kks6fp7yqsqjwy4knlzgllzxsiimv8nikmbd57dmi0"; depends=[assertthat cowplot dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges purrr rtracklayer S4Vectors]; }; + wpm = derive2 { name="wpm"; version="1.14.0"; sha256="1623q58fjxnx1632fn5c5rhx0zpglbjpp7zqp15f2gch01ac0xdy"; depends=[Biobase cli config dplyr DT ggplot2 golem logging RColorBrewer rlang shiny shinycustomloader shinydashboard shinyWidgets stringr SummarizedExperiment]; }; + wppi = derive2 { name="wppi"; version="1.12.0"; sha256="1mvr5bpsng87yl1bhd22h45830vw3sla1ysnr29px13if2q5ylmy"; depends=[dplyr igraph logger magrittr Matrix OmnipathR progress purrr RCurl rlang tibble tidyr]; }; + xcms = derive2 { name="xcms"; version="4.2.2"; sha256="1zk9l4ll3047fj0rngvjka2hkg2by26n2h3xm1iyvfiw5068y74y"; depends=[Biobase BiocGenerics BiocParallel IRanges jsonlite lattice MassSpecWavelet MetaboCoreUtils MsCoreUtils MsExperiment MsFeatures MSnbase mzR progress ProtGenerics RColorBrewer S4Vectors Spectra SummarizedExperiment]; }; + xcore = derive2 { name="xcore"; version="1.8.0"; sha256="04156svl1cjbhy51d7fbgdilp832wfifg37yr9civ829iyi79fha"; depends=[DelayedArray edgeR foreach GenomicRanges glmnet IRanges iterators magrittr Matrix MultiAssayExperiment S4Vectors]; }; + xmapbridge = derive2 { name="xmapbridge"; version="1.62.0"; sha256="0laahd3v5m313q1iq259aikgqf7zlmpxyxhws2pr7vg97g37bbhs"; depends=[]; }; + yamss = derive2 { name="yamss"; version="1.30.0"; sha256="0l9wqijwlq1gwybj2fy6jwgq6ja1mvx8yfdv174g5mjflx8nmc06"; depends=[BiocGenerics data_table EBImage IRanges limma Matrix mzR S4Vectors SummarizedExperiment]; }; + yarn = derive2 { name="yarn"; version="1.30.0"; sha256="1r0dj65i8xg1yb6x7ggb3s40hvzbh596k2g9bxblsbl18z867ydp"; depends=[Biobase biomaRt downloader edgeR gplots limma matrixStats preprocessCore quantro RColorBrewer readr]; }; + zFPKM = derive2 { name="zFPKM"; version="1.26.0"; sha256="1pgmw41xdq9gd2shc6kawgxz9sw1ydlgs0p35k99k2v50f86r2wy"; depends=[checkmate dplyr ggplot2 SummarizedExperiment tidyr]; }; + zellkonverter = derive2 { name="zellkonverter"; version="1.14.0"; sha256="13qkj9adv5is4fas667kxzc2zgni3ayl5hbimakq8y4mw6qj04dn"; depends=[basilisk cli DelayedArray Matrix reticulate S4Vectors SingleCellExperiment SummarizedExperiment]; }; + zenith = derive2 { name="zenith"; version="1.6.0"; sha256="14mj5flig4f0s3qgny26wj8l50d5f8bdp66gnh83wsqnln784x8m"; depends=[EnrichmentBrowser ggplot2 GSEABase limma msigdbr progress Rdpack reshape2 Rfast tidyr variancePartition]; }; + zinbwave = derive2 { name="zinbwave"; version="1.26.0"; sha256="07zlvzfs1c4gcj9hwgqbjhgbrffi301620chrf5lvzly4v7hafwi"; depends=[BiocParallel edgeR genefilter Matrix SingleCellExperiment softImpute SummarizedExperiment]; }; + zlibbioc = derive2 { name="zlibbioc"; version="1.50.0"; sha256="155q6983xjdjpq445lpg5n9gzf8gr18nll6dmjk7jwdq7fdxb602"; depends=[]; }; ABAEnrichment = derive2 { name="ABAEnrichment"; version="1.24.0"; sha256="1sp3f72rzlr822dxx42bswynrwwfx6f520hdhfdikqp13p2y4044"; depends=[ABAData data_table GOfuncR gplots gtools Rcpp]; broken = true; }; ALPS = derive2 { name="ALPS"; version="1.5.0"; sha256="1aydvzc6x0871iasij68xqdlhjyg69qbqxm0qh1q52w8gj2nyq3p"; depends=[assertthat BiocParallel ChIPseeker corrplot data_table dplyr genefilter GenomicRanges GGally gghalves ggplot2 ggseqlogo Gviz magrittr org_Hs_eg_db plyr reshape2 rtracklayer stringr tibble tidyr TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; broken = true; }; ASpediaFI = derive2 { name="ASpediaFI"; version="1.11.0"; sha256="13jny6ca8hdf269z37baaggfs7jss00ln09apn42pj411g3p7nms"; depends=[BiocParallel biomaRt dplyr DRaWR e1071 fgsea GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz igraph IRanges IVAS limma Matrix reshape2 ROCR Rsamtools rtracklayer S4Vectors scales SummarizedExperiment]; broken = true; }; @@ -2212,48 +2229,69 @@ in with self; { BAC = derive2 { name="BAC"; version="1.58.0"; sha256="00dkhns9n1x4wmlxjcw75h7iwwk37zlv1c2fi0g1mmsw1xvdjzp6"; depends=[]; broken = true; }; BDMMAcorrect = derive2 { name="BDMMAcorrect"; version="1.18.1"; sha256="17lsgl5mczfk2flkrclxhsqkkpr6mncccywm68l0z02pi5xhd8j7"; depends=[ape ellipse ggplot2 Rcpp RcppArmadillo RcppEigen SummarizedExperiment vegan]; broken = true; }; BGmix = derive2 { name="BGmix"; version="1.59.0"; sha256="16fzgxcy4sk0kd67vzdxqz81s84dvh4bqss9cbl9bn6vhpfsnfyf"; depends=[KernSmooth]; broken = true; }; + BRGenomics = derive2 { name="BRGenomics"; version="1.14.1"; sha256="09kpb9jn84np1z8k72ngsbd0xx6v0x3kcl738wizr64w0j9zhlla"; depends=[DESeq2 GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; broken = true; }; + BgeeCall = derive2 { name="BgeeCall"; version="1.18.1"; sha256="1ipypkyfqx6mahiwl0gzdsi7z9j9cm5rgfw4ybgh6blfq8kg9qyk"; depends=[biomaRt Biostrings data_table dplyr GenomicFeatures jsonlite rhdf5 rslurm rtracklayer sjmisc tximport]; broken = true; }; BioMM = derive2 { name="BioMM"; version="1.15.0"; sha256="01lfw0npcclcyqqh2xkhjq9jw0irbk13fsj5y1b3rz1amzzngg6p"; depends=[BiocParallel CMplot e1071 ggplot2 glmnet imager lattice nsprcomp precrec ranger rms topGO vioplot xlsx]; broken = true; }; + BioNetStat = derive2 { name="BioNetStat"; version="1.22.0"; sha256="1rbb36v64b9xbk2dsf6wsyrhwwbkysrj8fp1g22y3gisdk170sg8"; depends=[BiocParallel DT ggplot2 Hmisc igraph knitr markdown pathview pheatmap plyr psych RColorBrewer RJSONIO rmarkdown shiny shinyBS whisker yaml]; broken = true; }; BioPlex = derive2 { name="BioPlex"; version="1.2.3"; sha256="0cn0x6ij2a3xy61bq0qy5amp0ipj4r4shh7g0vlwbkrclj9w347r"; depends=[BiocFileCache GenomeInfoDb GenomicRanges GEOquery graph SummarizedExperiment]; broken = true; }; + BioTIP = derive2 { name="BioTIP"; version="1.16.0"; sha256="1bbjfv3bi20xlk8h7r5ipav6mfs27lmj0zjb5mk1gmp071dmnk0y"; depends=[cluster GenomicRanges igraph MASS psych scran stringr]; broken = true; }; BiocDockerManager = derive2 { name="BiocDockerManager"; version="1.11.0"; sha256="0w393f14i253pnk0jzf2ci4g5cnxshwdjmix2r8arlnadh7spjyk"; depends=[dplyr httr memoise readr whisker]; broken = true; }; BitSeq = derive2 { name="BitSeq"; version="1.41.0"; sha256="185cssrvaw2x0r3y5fqnfqm31924ccwg33qpj3v8ywrh3x7qn22p"; depends=[IRanges Rhtslib Rsamtools S4Vectors]; broken = true; }; BrainSABER = derive2 { name="BrainSABER"; version="1.8.0"; sha256="1nxcjvaip7pp387bhdc2pmjai3chib1n63ig0cslhppzzjp2y6jd"; depends=[BiocFileCache biomaRt data_table lsa S4Vectors shiny SummarizedExperiment]; broken = true; }; CAnD = derive2 { name="CAnD"; version="1.27.0"; sha256="14x0m5iv7dm1iii5zsny9wnf4j5ddh0kij2jm658r3i4wnc99mkb"; depends=[ggplot2 reshape]; broken = true; }; CNVgears = derive2 { name="CNVgears"; version="1.8.0"; sha256="1p7dxzkna3czkpsidj586hfwhymrjwvjr6q5f2pq7zlmpn6f8svx"; depends=[data_table ggplot2]; broken = true; }; + COHCAP = derive2 { name="COHCAP"; version="1.48.0"; sha256="1czbmjmrldp4xwf2pi542aqxxgjg34bvky716fjf5y3zxp4j5pnd"; depends=[BH COHCAPanno gplots RColorBrewer Rcpp RcppArmadillo WriteXLS]; broken = true; }; + CORREP = derive2 { name="CORREP"; version="1.68.0"; sha256="1ida60gpbkr5iyn74y6df8gd0znjkzbidyi7sz4my47fw4j8wrin"; depends=[e1071]; broken = true; }; CSSP = derive2 { name="CSSP"; version="1.37.0"; sha256="08l8ag82n9hdrj31m37f4fm9kvxjx7xyprdlbi20aqrzsrd227gr"; depends=[]; broken = true; }; CancerInSilico = derive2 { name="CancerInSilico"; version="2.18.0"; sha256="0szbz88wnr3dbf7k9bhihv6hkr29gsp9vrllr201wx5qfzl2gncy"; depends=[BH Rcpp]; broken = true; }; CancerSubtypes = derive2 { name="CancerSubtypes"; version="1.26.0"; sha256="06lw7b43fwh554870w71i676q6gm6kx53580cgg17a7prdjndkmr"; depends=[cluster ConsensusClusterPlus impute limma NMF sigclust survival]; broken = true; }; + CellaRepertorium = derive2 { name="CellaRepertorium"; version="1.12.0"; sha256="0k9sxh0b9g2841zpkbmcc65v0kfyv1i6sxzdmbr49nzzm27xlbh2"; depends=[BiocGenerics Biostrings dplyr forcats generics glue Matrix progress purrr Rcpp reshape2 rlang S4Vectors stringr tibble tidyr]; broken = true; }; + Cepo = derive2 { name="Cepo"; version="1.8.0"; sha256="0s1zra4msgbp37r5lp0zs9j2aq054rcmrmhwi3liwp4wkvjbshw8"; depends=[BiocParallel DelayedArray DelayedMatrixStats dplyr ggplot2 GSEABase HDF5Array patchwork reshape2 rlang S4Vectors SingleCellExperiment SummarizedExperiment]; broken = true; }; ChIC = derive2 { name="ChIC"; version="1.19.0"; sha256="0zbmhixxn3skn8csz93fyyfamz1n3gzjzb2caw8ybi2cysgzz5ys"; depends=[BiocGenerics caret caTools ChIC_data genomeIntervals GenomicRanges IRanges progress randomForest Rsamtools S4Vectors]; broken = true; }; Clonality = derive2 { name="Clonality"; version="1.47.0"; sha256="0yxwwc0sl3impvzr0bmjmdn65z6qx6lf5pwik2p8wxxgaybvff9r"; depends=[DNAcopy]; broken = true; }; CoRegNet = derive2 { name="CoRegNet"; version="1.38.0"; sha256="19df43l35dkf36dhq8fx8a9gm1grxymrmpcix0b4qmxrzwjp0s8k"; depends=[arules igraph shiny]; broken = true; }; + CoSIA = derive2 { name="CoSIA"; version="1.2.0"; sha256="14d7l88346wkh4fj9y4f2lywfqbawz60z86f6wm2r2vh8zhcbk8i"; depends=[AnnotationDbi annotationTools biomaRt dplyr ExperimentHub ggplot2 homologene magrittr org_Ce_eg_db org_Dm_eg_db org_Dr_eg_db org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db plotly RColorBrewer readr stringr tibble tidyr tidyselect]; broken = true; }; CompGO = derive2 { name="CompGO"; version="1.28.0"; sha256="16nlrk9wbxj51y8s7s58mdhpi70ghfacxi283406gwya3cm79f0n"; depends=[GenomicFeatures ggplot2 pathview pcaMethods reshape2 Rgraphviz rtracklayer TxDb_Mmusculus_UCSC_mm9_knownGene]; broken = true; }; CopywriteR = derive2 { name="CopywriteR"; version="2.29.0"; sha256="1h4cyrjwdazgk49yzi9lvya8bfz9r4cpq19hyzikvc81ia8zdxs6"; depends=[BiocParallel chipseq CopyhelpeR data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; broken = true; }; CountClust = derive2 { name="CountClust"; version="1.21.0"; sha256="17px9jkpjwz0j2f5h8xv52wh24ilqvlb6dvczjc36lb7mq4cw3sq"; depends=[cowplot flexmix ggplot2 gtools limma maptpx picante plyr reshape2 slam SQUAREM]; broken = true; }; CytoTree = derive2 { name="CytoTree"; version="1.6.0"; sha256="1dsdhwjkd3ngnw50fs6vz048afk47r95vhi0wqj8sip11nhndkd8"; depends=[Biobase BiocNeighbors cluster destiny flowCore FlowSOM flowUtils ggplot2 gmodels igraph limma Matrix matrixStats mclust pheatmap prettydoc RANN Rcpp Rtsne scatterpie scatterplot3d stringr sva umap]; broken = true; }; DEComplexDisease = derive2 { name="DEComplexDisease"; version="1.18.0"; sha256="12gw9b0gdwyih51j2gzay6vxhycgc52n8svd0slv6wsbw5rc19lh"; depends=[BiocParallel ComplexHeatmap DESeq2 edgeR Rcpp SummarizedExperiment]; broken = true; }; DMRforPairs = derive2 { name="DMRforPairs"; version="1.35.0"; sha256="1fdj2kk4hy1cy7lvxdcdigzvjsggsrchff10mccwwpycc4h115dj"; depends=[GenomicRanges Gviz R2HTML]; broken = true; }; - EasyCellType = derive2 { name="EasyCellType"; version="1.2.0"; sha256="1l68g7hlcfmszf9sg1nagkv00sgd80klgi25jizabj6c1mg0pm13"; depends=[AnnotationDbi clusterProfiler dplyr forcats ggplot2 magrittr org_Hs_eg_db org_Mm_eg_db rlang]; broken = true; }; + DeepBlueR = derive2 { name="DeepBlueR"; version="1.27.0"; sha256="03v1ag250zq8wj3fxnsg2ii8l93vq6dg9dxqyiqdjnbvxc0y26xg"; depends=[data_table diffr dplyr filehash foreach GenomeInfoDb GenomicRanges R_utils RCurl rjson rtracklayer settings stringr withr XML]; broken = true; }; + EBSeqHMM = derive2 { name="EBSeqHMM"; version="1.35.0"; sha256="1vgpda6h9caq67iqdd88mrhq8502jc056zf8fgwfgd8z9cayhsdn"; depends=[EBSeq]; broken = true; }; EasyqpcR = derive2 { name="EasyqpcR"; version="1.31.0"; sha256="0lb2px789668fr1gxghycy7lbdkpwmippv6xmmwws6rbanvfd6v4"; depends=[matrixStats plotrix plyr]; broken = true; }; + EpiCompare = derive2 { name="EpiCompare"; version="1.6.7"; sha256="1vaxxikfvmi5n8s80df7sb2jqdvc8q66ybw8hshp79f98aiczfgc"; depends=[AnnotationHub BiocGenerics BRGenomics ChIPseeker data_table downloadthis genomation GenomeInfoDb GenomicRanges ggplot2 htmltools IRanges plotly reshape2 rmarkdown rtracklayer stringr]; broken = true; }; FCBF = derive2 { name="FCBF"; version="2.8.0"; sha256="1clg3s2av70j0pm0yj0ckvlklkkg5zb0r057pz6wmklllfkmx1dv"; depends=[ggplot2 gridExtra mclust pbapply SummarizedExperiment]; broken = true; }; FScanR = derive2 { name="FScanR"; version="1.10.0"; sha256="1v4iq2wlvxf0wbs2d9ip3pcfx3a533pqp4as9pr0f6q57cvqi2bs"; depends=[]; broken = true; }; FindMyFriends = derive2 { name="FindMyFriends"; version="1.23.0"; sha256="0xbhl6ljxb522r5062vv6xdziaaqkkwylmvlymvc5f1grjz0a4z9"; depends=[Biobase BiocGenerics BiocParallel Biostrings digest dplyr filehash ggdendro ggplot2 gtable igraph IRanges kebabs Matrix Rcpp reshape2 S4Vectors]; broken = true; }; FlowRepositoryR = derive2 { name="FlowRepositoryR"; version="1.23.0"; sha256="04lk2cahf6zqnhpzh0zwas4vmvaz4kcik9ri65bs9d9ximzjam91"; depends=[jsonlite RCurl XML]; broken = true; }; FoldGO = derive2 { name="FoldGO"; version="1.18.0"; sha256="0h08yv1kykllaanc562ncwv3ajic7cd4wcqba24nlbh6agsazwyk"; depends=[ggplot2 tidyr topGO]; broken = true; }; + FunChIP = derive2 { name="FunChIP"; version="1.28.0"; sha256="1qhwabm7vgjqmgxdla6qs70sncvzjc8qh5vpq5xqp50hk1lli7f1"; depends=[doParallel fda foreach GenomeInfoDb GenomicAlignments GenomicRanges RColorBrewer Rcpp Rsamtools shiny]; broken = true; }; GAPGOM = derive2 { name="GAPGOM"; version="1.11.0"; sha256="0sl97w5zx4zdrdbcwayqyvgxspaxpbils3mpsrim0zlspjrjcy6z"; depends=[AnnotationDbi Biobase BiocFileCache data_table dplyr fastmatch GEOquery GO_db GOSemSim graph igraph magrittr Matrix matrixStats org_Hs_eg_db org_Mm_eg_db plyr RBGL]; broken = true; }; GCSConnection = derive2 { name="GCSConnection"; version="1.7.0"; sha256="1psmw3825whyzvbzqpqksgcl09b6kfyb8k5vny6ljkjbac1jzvnf"; depends=[googleAuthR googleCloudStorageR httr jsonlite Rcpp]; broken = true; }; GCSFilesystem = derive2 { name="GCSFilesystem"; version="1.6.0"; sha256="0qk8xyg06f71y4r1q1zpcj89irh9i6cd9z6nqlx635x8if84sh6d"; depends=[]; broken = true; }; GCSscore = derive2 { name="GCSscore"; version="1.14.0"; sha256="0fqr0sgplpbkdpvwgi8fpmwmnqja41622pvkkzsalbzai021hgp3"; depends=[affxparser Biobase BiocManager data_table devtools dplR RSQLite stringr]; broken = true; }; + GISPA = derive2 { name="GISPA"; version="1.26.0"; sha256="19vbcfdf959xs6kgds37ij3qay9x61dzrlvcs238m7hywl4dn3lz"; depends=[Biobase changepoint data_table genefilter GSEABase HH lattice latticeExtra plyr scatterplot3d]; broken = true; }; + GOSim = derive2 { name="GOSim"; version="1.40.0"; sha256="1izsjs3li1qcp2nfy7zk3zbf3hh7kq75r78ijbn5yln9fgs6mbv1"; depends=[annotate AnnotationDbi cluster corpcor flexmix GO_db graph Matrix org_Hs_eg_db RBGL Rcpp topGO]; broken = true; }; + GOsummaries = derive2 { name="GOsummaries"; version="2.37.0"; sha256="1r2a1bym6hwhah4gq47j7983znwsl3fwbhx9lw9j1nxm4ip0d7nr"; depends=[ggplot2 gProfileR gtable limma plyr Rcpp reshape2]; broken = true; }; GRridge = derive2 { name="GRridge"; version="1.22.0"; sha256="0vmwm50dwk3im3qx40vh9ipmfqywzz5fmmm79b74zjcd3qjrznf3"; depends=[glmnet graph Iso mvtnorm penalized survival]; broken = true; }; GeneAccord = derive2 { name="GeneAccord"; version="1.15.0"; sha256="1dlnqdcrl1fv5yf0zwfgkqfd2x19fv6q84p7c730nmnnaqal6md1"; depends=[biomaRt caTools dplyr ggplot2 ggpubr gtools magrittr maxLik RColorBrewer reshape2 tibble]; broken = true; }; GeneAnswers = derive2 { name="GeneAnswers"; version="2.36.0"; sha256="1f8q3hi913khyy1cc3yp2635gaik47alsqmhi0mi24cy340faplz"; depends=[annotate Biobase downloader Heatplus igraph KEGGREST MASS RBGL RColorBrewer RCurl RSQLite XML]; broken = true; }; GenoGAM = derive2 { name="GenoGAM"; version="2.11.0"; sha256="058qix2h0zm2k9csmbdhci2wqih3lyggjj591cqn0ls2nv7bnyvj"; depends=[BiocParallel Biostrings data_table DelayedArray DESeq2 futile_logger GenomeInfoDb GenomicAlignments GenomicRanges HDF5Array IRanges Matrix Rcpp RcppArmadillo rhdf5 Rsamtools S4Vectors sparseinv SummarizedExperiment]; broken = true; }; HPAStainR = derive2 { name="HPAStainR"; version="1.9.0"; sha256="1bjysi3x8248f262v4rzi2y50rlzryb987wbvdjy6af84nq7hd09"; depends=[data_table dplyr scales shiny stringr tibble tidyr]; broken = true; }; + HTqPCR = derive2 { name="HTqPCR"; version="1.56.0"; sha256="14cff36ikbqhd5xizihpxzsv9jimcpbgnd381jd154pgi60bil0m"; depends=[affy Biobase gplots limma RColorBrewer]; broken = true; }; IRISFGM = derive2 { name="IRISFGM"; version="1.8.0"; sha256="1n13rsbg5y0xnr6in18silifx8jhqzjj1vb5kpjgy5ml55im1s5r"; depends=[AdaptGauss AnnotationDbi anocva clusterProfiler colorspace DEsingle DrImpute ggplot2 ggpubr ggraph igraph knitr Matrix MCL mixtools org_Hs_eg_db org_Mm_eg_db pheatmap Polychrome RColorBrewer Rcpp scater scran Seurat SingleCellExperiment]; broken = true; }; + ImmuneSpaceR = derive2 { name="ImmuneSpaceR"; version="1.30.0"; sha256="0lhilrh4xyw1cvqnx4b6g0llm9b1i4l2r476d4hmypkkgl25q8n7"; depends=[Biobase curl data_table digest flowCore flowWorkspace ggplot2 gplots heatmaply httr jsonlite pheatmap plotly preprocessCore R6 Rlabkey rmarkdown scales]; broken = true; }; + IntOMICS = derive2 { name="IntOMICS"; version="1.2.0"; sha256="1qhni8p8zap9szi499jrdxkacdrb7vdd4va5h4n0kdi4qr80vrzh"; depends=[bestNormalize bnlearn bnstruct cowplot ggplot2 ggraph gplots igraph matrixStats numbers RColorBrewer rlang SummarizedExperiment]; broken = true; }; IsoGeneGUI = derive2 { name="IsoGeneGUI"; version="2.31.0"; sha256="1w7zxsvmcrz8cj8g8xa1vqbzfycdhgsclhcjmkqjw1hwz6fp3xgn"; depends=[Biobase ff geneplotter goric Iso IsoGene jpeg multtest ORCME ORIClust RColorBrewer Rcpp relimp tkrplot xlsx]; broken = true; }; + LPEadj = derive2 { name="LPEadj"; version="1.62.0"; sha256="17m5lclr2rwb2z0i230gsxkccysmpcvsp4kxjpdjhvnikfm46ssp"; depends=[LPE]; broken = true; }; + LineagePulse = derive2 { name="LineagePulse"; version="1.21.0"; sha256="09x1i7slysqf3dpjzck6rgfzhyswaj0kk8i047yscg8fcaksbmqg"; depends=[BiocParallel circlize ComplexHeatmap ggplot2 gplots knitr Matrix RColorBrewer SingleCellExperiment SummarizedExperiment]; broken = true; }; LowMACA = derive2 { name="LowMACA"; version="1.28.0"; sha256="0j5233xziszwak65rypd9f8lsp25sdr4j5nm5kanj4d4wd0zsdqv"; depends=[BiocParallel Biostrings cBioPortalData data_table gridBase httr LowMACAAnnotation motifStack plyr RColorBrewer reshape2 stringr]; broken = true; }; MACPET = derive2 { name="MACPET"; version="1.15.1"; sha256="0742i3fxg2793lhgpxb4whh6mwvzd4bn86ykd0rv8sgilxyq5zsl"; depends=[BH bigmemory BiocParallel Biostrings futile_logger GenomeInfoDb GenomicAlignments GenomicRanges GEOquery gtools InteractionSet intervals IRanges knitr plyr Rbowtie Rcpp Rsamtools rtracklayer S4Vectors ShortRead]; broken = true; }; MIGSA = derive2 { name="MIGSA"; version="1.21.0"; sha256="0b7w9lzi8xb1vzh7zahw7wh9jm7x1y04rs2gvvjmfbdfw085rdpm"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel data_table edgeR futile_logger ggdendro ggplot2 GO_db GOstats graph GSEABase ismev jsonlite limma matrixStats org_Hs_eg_db RBGL reshape2 Rgraphviz vegan]; broken = true; }; MIMOSA = derive2 { name="MIMOSA"; version="1.37.0"; sha256="0dpz0r1kswdb4wzkpj5798gs627vzvvbwbkild2fc1gvmh9p8lwc"; depends=[Biobase coda data_table dplyr Formula ggplot2 MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape rlang scales testthat tidyr]; broken = true; }; MMAPPR2 = derive2 { name="MMAPPR2"; version="1.14.0"; sha256="14m41hi79f7m2qigjjcgy08awrf0654ridgm6wxcq8cmmlm68g8a"; depends=[Biobase BiocGenerics BiocParallel data_table dplyr ensemblVEP GenomeInfoDb GenomicRanges gmapR IRanges magrittr Rsamtools S4Vectors stringr tidyr VariantAnnotation VariantTools]; broken = true; }; + MQmetrics = derive2 { name="MQmetrics"; version="1.10.0"; sha256="15jkmdj2k5h8vbi332y7b4xzm2330g2s13l6lf2d1v9pg5aqrisq"; depends=[cowplot dplyr ggforce gghalves ggplot2 ggpubr ggrepel gridExtra gtable knitr magrittr plyr purrr RColorBrewer readr reshape2 rlang rmarkdown scales stringr tidyr]; broken = true; }; MSEADbi = derive2 { name="MSEADbi"; version="1.2.0"; sha256="1g1kg3nh7iwg5nrpmig6srw6as4yfwmbqn965pffrk0zp19llsbf"; depends=[AnnotationDbi Biobase DBI RSQLite]; broken = true; }; MSGFgui = derive2 { name="MSGFgui"; version="1.28.0"; sha256="0dkj2nbv5xv4v4bbmf91av0ryh9pxdfp7fmbqlma4xyf1r7zmx4c"; depends=[MSGFplus mzID mzR shiny shinyFiles xlsx]; broken = true; }; MSGFplus = derive2 { name="MSGFplus"; version="1.28.0"; sha256="1k0qm049gk4gjhd88zhxxrpc944r7ndq8dys08ai2kbaqignvb7y"; depends=[mzID ProtGenerics]; broken = true; }; @@ -2262,6 +2300,7 @@ in with self; { MetaVolcanoR = derive2 { name="MetaVolcanoR"; version="1.14.0"; sha256="11fxjv0kb65wc2237rh3340j72v3zsd4s019bi07rbpqnl246pnj"; depends=[cowplot data_table dplyr ggplot2 htmlwidgets metafor metap plotly rlang tidyr topconfects]; broken = true; }; Metab = derive2 { name="Metab"; version="1.33.0"; sha256="0fid4b3yk56z2sm6hxfp0z30nqjsky9sv4x49x912bw61amvrwky"; depends=[pander svDialogs xcms]; broken = true; }; MethCP = derive2 { name="MethCP"; version="1.11.0"; sha256="099jaadjfalvxpwq3k630yrqa1dfbp8rqn2fahz1rsha3y5z9bys"; depends=[BiocParallel bsseq DNAcopy DSS GenomeInfoDb GenomicRanges IRanges methylKit S4Vectors]; broken = true; }; + MobilityTransformR = derive2 { name="MobilityTransformR"; version="1.6.0"; sha256="1292fk08zi1zf0hdj56vzdgv9h9nr16vmbzypqkam7lvqqnig49h"; depends=[MetaboCoreUtils MSnbase Spectra xcms]; broken = true; }; NBSplice = derive2 { name="NBSplice"; version="1.15.0"; sha256="0yn7s7igshall34cflmdwvmknv8h1zdi6vg8svvcyn9fvzlgjdm8"; depends=[BiocParallel car edgeR ggplot2 MASS reshape2]; broken = true; }; NanoStringQCPro = derive2 { name="NanoStringQCPro"; version="1.32.0"; sha256="0k2sgs6d25ryjlm9c17nxqqcdi3q04j3y9qb1rig23jimfvs3xs9"; depends=[AnnotationDbi Biobase knitr NMF org_Hs_eg_db png RColorBrewer]; broken = true; }; NeighborNet = derive2 { name="NeighborNet"; version="1.18.0"; sha256="046k1799wz77ww4jhf935pfz2637dmzy7p848iyjxj1yc5g51jq8"; depends=[graph]; broken = true; }; @@ -2270,53 +2309,75 @@ in with self; { OmicsLonDA = derive2 { name="OmicsLonDA"; version="1.15.0"; sha256="1kn26k0lnk7hgfzk1kh5bh41zkia8a4pzsfr35mbjrflcxmvgk2w"; depends=[BiocGenerics BiocParallel ggplot2 gss plyr pracma SummarizedExperiment zoo]; broken = true; }; PERFect = derive2 { name="PERFect"; version="1.14.0"; sha256="0ygbirfnp122c8jzrig5cnm6rxyhz126ixl5ca49i13kizcv2ns9"; depends=[fitdistrplus ggplot2 Matrix phyloseq psych sn zoo]; broken = true; }; PFP = derive2 { name="PFP"; version="1.7.0"; sha256="1328a73ggg7l1drjbmv67jcvlv83khn1k252mf81xj4gf213d0di"; depends=[clusterProfiler ggplot2 graph igraph KEGGgraph magrittr plyr tidyr]; broken = true; }; + PSEA = derive2 { name="PSEA"; version="1.36.0"; sha256="02gnxacnpzz74bk4y4nkd6pd8y8abi0988zf03x1mcgnn7hk1s2y"; depends=[Biobase MASS]; broken = true; }; PSICQUIC = derive2 { name="PSICQUIC"; version="1.34.0"; sha256="0gkkxxbc2a7cin92qwn1masqfigyz9s4fhyy2daa17r3ckk4ccgx"; depends=[BiocGenerics biomaRt httr IRanges plyr RCurl]; broken = true; }; PanVizGenerator = derive2 { name="PanVizGenerator"; version="1.22.0"; sha256="0rhx2jc5kc9bl00v16frh8b4075n0jqn4s37pkvqp3ypcbqws32d"; depends=[igraph jsonlite pcaMethods shiny]; broken = true; }; + Pi = derive2 { name="Pi"; version="2.14.0"; sha256="16jh7p3f6nk2hwvp44b9sas1dl618m520xj553x9dkaj77jmzp6d"; depends=[BiocGenerics caret dplyr GenomeInfoDb GenomicRanges ggnetwork ggplot2 ggrepel glmnet igraph IRanges lattice MASS Matrix osfr plot3D purrr randomForest RCircos readr ROCR scales supraHex tibble tidyr]; broken = true; }; + PloGO2 = derive2 { name="PloGO2"; version="1.14.0"; sha256="0r0zf8dfb4pv4hv5fp5v61i3q5bnzwxws1v3cnx7l64b0hjl2ffi"; depends=[GO_db GOstats httr lattice openxlsx xtable]; broken = true; }; PoTRA = derive2 { name="PoTRA"; version="1.13.0"; sha256="1a32d1wndb24pxza3h53yddj9z2clff5srny2k00pbbfq1h99mjf"; depends=[BiocGenerics graph graphite igraph org_Hs_eg_db]; broken = true; }; PrecisionTrialDrawer = derive2 { name="PrecisionTrialDrawer"; version="1.11.0"; sha256="1miw8rj1zn1xv97dkgs66k9g21i6gp3j2m1l1akysskczgam3i2c"; depends=[BiocParallel biomaRt brglm data_table DT GenomicRanges ggplot2 ggrepel googleVis httr IRanges jsonlite LowMACAAnnotation magrittr matrixStats RColorBrewer reshape2 S4Vectors shiny shinyBS stringr XML]; broken = true; }; ProteomicsAnnotationHubData = derive2 { name="ProteomicsAnnotationHubData"; version="1.24.0"; sha256="0qs5hbx7pww7qxxaimp2xqvs3lwcd41ndls0xcvvlk7pnp4i4sk8"; depends=[AnnotationHub AnnotationHubData Biobase BiocManager Biostrings GenomeInfoDb MSnbase mzR RCurl]; broken = true; }; PubScore = derive2 { name="PubScore"; version="1.8.0"; sha256="18bmzvv6mxrdlh297i29q24vi5rc4x2mjaryi5asiki186x0hy8d"; depends=[dplyr ggplot2 ggrepel igraph intergraph network progress rentrez sna]; broken = true; }; - RCSL = derive2 { name="RCSL"; version="1.8.0"; sha256="149bh9bd6h9qg82cnbnl9m8w8d10cw8b0z31qbyb9byfakn0a9hn"; depends=[ggplot2 igraph NbClust pracma RcppAnnoy Rtsne umap]; broken = true; }; RGalaxy = derive2 { name="RGalaxy"; version="1.38.0"; sha256="0vfsn8cj5c8n58ra1qz85gwmm1747lm3xdz17m20f73g8q78nymd"; depends=[Biobase BiocGenerics optparse roxygen2 XML]; broken = true; }; RIPAT = derive2 { name="RIPAT"; version="1.10.0"; sha256="154a79xyihxkg3sbwxz9ch0ixqlqv9gwkpsv88i55c75qyzkx2sm"; depends=[biomaRt GenomicRanges ggplot2 IRanges karyoploteR openxlsx plyr regioneR rtracklayer stringr]; broken = true; }; + RLSeq = derive2 { name="RLSeq"; version="1.5.2"; sha256="0nhip321gbv6phwdwi3qkbmhnfh7fhb9md6xs4lklskwkkrd7s1q"; depends=[AnnotationHub aws_s3 callr caretEnsemble circlize ComplexHeatmap dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggplotify ggprism pheatmap RColorBrewer regioneR rtracklayer valr VennDiagram]; broken = true; }; RNASeqR = derive2 { name="RNASeqR"; version="1.16.0"; sha256="0m7d3mm644n81630v2m6vv7798x3rjshb9jcp63xq631j1wmk63i"; depends=[ballgown Biostrings clusterProfiler corrplot DESeq2 DOSE edgeR factoextra FactoMineR ggplot2 gridExtra org_Hs_eg_db org_Sc_sgd_db pathview PerformanceAnalytics pheatmap rafalib reshape2 reticulate Rsamtools stringr systemPipeR systemPipeRdata]; broken = true; }; + RandomWalkRestartMH = derive2 { name="RandomWalkRestartMH"; version="1.22.0"; sha256="0mvh22p0dliwapdgbl5r93dpjdfnvnxdv5ig3y9gd2ndn32h1cyc"; depends=[igraph Matrix]; broken = true; }; Rcade = derive2 { name="Rcade"; version="1.39.1"; sha256="05cli4h96xcsf6xas9z5ma8bzh10grlwkfgmz4a115ykblwyaj4r"; depends=[baySeq GenomeInfoDb GenomicAlignments GenomicRanges IRanges plotrix rgl Rsamtools S4Vectors]; broken = true; }; - RcisTarget = derive2 { name="RcisTarget"; version="1.20.0"; sha256="0dp2y85mfn995rvg698xnxlkz1kd8g0byjypxx62cpfldnkrinxl"; depends=[arrow AUCell BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges GSEABase R_utils S4Vectors SummarizedExperiment tibble]; broken = true; }; + ReQON = derive2 { name="ReQON"; version="1.48.0"; sha256="0w28b3ma8r8rshijdm5jj1z64v91my7hcvw18r9pdwjprh05bw0g"; depends=[rJava Rsamtools seqbias]; broken = true; }; RefPlus = derive2 { name="RefPlus"; version="1.70.0"; sha256="0ii4pki0gqsfcjlfwq5hx67yf0id2krrgs8qnss4gijj27m8h86m"; depends=[affy affyPLM Biobase preprocessCore]; broken = true; }; - RegEnrich = derive2 { name="RegEnrich"; version="1.10.0"; sha256="09gkmna3w0x5m0mpq1llrqsrknlx2hncn74f4fksmx4r4mj0gphd"; depends=[BiocParallel BiocSet DESeq2 DOSE dplyr fgsea ggplot2 limma magrittr randomForest reshape2 S4Vectors SummarizedExperiment tibble WGCNA]; broken = true; }; Rgin = derive2 { name="Rgin"; version="1.15.0"; sha256="1x5zj2d5rvsr2xh0ifpnrys9v91dal1xxhv5mmk16rs8wzwqpqba"; depends=[RcppEigen]; broken = true; }; + Ringo = derive2 { name="Ringo"; version="1.66.0"; sha256="1ch0akd4k1i4401jwxll5awlq7g12pw7x0kidarn5zva08jgiixd"; depends=[Biobase BiocGenerics genefilter lattice limma Matrix RColorBrewer vsn]; broken = true; }; + Risa = derive2 { name="Risa"; version="1.44.0"; sha256="140q4x4sl7mffpglwy7hx0z5la2rkq0p1j22k36a4h1073wcpc2q"; depends=[affy Biobase biocViews Rcpp xcms]; broken = true; }; RmiR = derive2 { name="RmiR"; version="1.49.0"; sha256="16nwh4a97qvyicm4f102xs52lx8cld0b80fykgil86kkd6v8zlja"; depends=[DBI RmiR_Hs_miRNA]; broken = true; }; RpsiXML = derive2 { name="RpsiXML"; version="2.38.0"; sha256="0x4nph4xss4piq4fgijjjj33yrqqfdbsgn9wvqy17nglvz5gi7bi"; depends=[annotate AnnotationDbi Biobase graph hypergraph RBGL XML]; broken = true; }; + SANTA = derive2 { name="SANTA"; version="2.38.0"; sha256="0gm9i0pj3c9sir8pmh12b62ah6x1gvy1lrp9hc6hg9rkh4gpyr0y"; depends=[igraph Matrix]; broken = true; }; SCATE = derive2 { name="SCATE"; version="1.10.0"; sha256="1fkswn9xlbr4mrnr62yzk51dri7rzbvf28whh7qhdfxgyvavw439"; depends=[GenomicAlignments GenomicRanges mclust preprocessCore Rtsne SCATEData splines2 xgboost]; broken = true; }; SEPIRA = derive2 { name="SEPIRA"; version="1.20.0"; sha256="1yhlm6l9jv8fhdhnhpj7r8cdpnrp1la287x85gcssqjnv5v4k047"; depends=[corpcor limma]; broken = true; }; + SGCP = derive2 { name="SGCP"; version="1.2.0"; sha256="1cc0brhw77b73nircb3n2ghbihdjmk7l11s8nmkvljydx6b52sja"; depends=[annotate caret DescTools dplyr expm genefilter ggplot2 ggridges GO_db GOstats graph openxlsx org_Hs_eg_db plyr RColorBrewer reshape2 Rgraphviz RSpectra SummarizedExperiment xtable]; broken = true; }; SISPA = derive2 { name="SISPA"; version="1.30.0"; sha256="0glqk2p06brw9a9prccil02z82nhq2izh2sgfrlmi1kpf8mgszl3"; depends=[changepoint data_table genefilter ggplot2 GSVA plyr]; broken = true; }; SLGI = derive2 { name="SLGI"; version="1.54.0"; sha256="03jwdq4k44rys3f773c6l985a6v1bacbdghw97p0qpwspmzra8rs"; depends=[AnnotationDbi Biobase BiocGenerics GO_db lattice]; broken = true; }; + SMAP = derive2 { name="SMAP"; version="1.66.0"; sha256="0m6jvb3jpnk36cv8grj1s3af6nm9xnn3x0mxkrwfbpgzvcn5735n"; depends=[]; broken = true; }; SPONGE = derive2 { name="SPONGE"; version="1.22.0"; sha256="1ayvigqj5j7s7031gpyhaz3m3z85w9j8j850pggshy9gixvy1mnp"; depends=[Biobase biomaRt caret ComplexHeatmap cvms data_table doRNG dplyr expm foreach ggplot2 ggpubr ggridges glmnet gRbase igraph iterators logging MASS MetBrewer miRBaseConverter ppcor randomForest rlang stringr tidyr tidyverse tnet]; broken = true; }; + SQUADD = derive2 { name="SQUADD"; version="1.52.0"; sha256="0vg7mhx2aldk53jdgy4k8yk3jyjwklmp13mxch7cxinr8bzbyjh6"; depends=[RColorBrewer]; broken = true; }; STAN = derive2 { name="STAN"; version="2.26.2"; sha256="0dd4hb2iabvnr6v0ys4jslj7611z1hii8hxkdvwrjbz4nn678wkv"; depends=[BiocGenerics GenomeInfoDb GenomicRanges Gviz IRanges poilog Rsolnp S4Vectors]; broken = true; }; STROMA4 = derive2 { name="STROMA4"; version="1.24.0"; sha256="1x3zgxkcck8ffh89mql45cp54c94n64kf9x6dan9wl24bj3x869f"; depends=[Biobase BiocParallel cluster matrixStats]; broken = true; }; ScISI = derive2 { name="ScISI"; version="1.65.0"; sha256="0q3bbfsink5d8xslhp129qwvlq5mdzw8zkv9msd0q8qmkclsbiz1"; depends=[annotate AnnotationDbi apComplex GO_db org_Sc_sgd_db RpsiXML]; broken = true; }; + SimBindProfiles = derive2 { name="SimBindProfiles"; version="1.40.0"; sha256="0adcyw4x7yw4v20bwx4fzrhqd7g1r9fhpr1nqqnwkg44b51rdm6z"; depends=[Biobase limma mclust Ringo]; broken = true; }; + SpidermiR = derive2 { name="SpidermiR"; version="1.32.0"; sha256="07s421c8ashww8x99ac18fy1lvjl4zmm3jsz0fggw1gvii172c1x"; depends=[AnnotationDbi gdata httr igraph miRNAtap miRNAtap_db org_Hs_eg_db]; broken = true; }; + StarBioTrek = derive2 { name="StarBioTrek"; version="1.28.0"; sha256="0cpgn0zcimg18yybfgrjzdczsinvx6n81jjm850gbi76ararq8sc"; depends=[AnnotationDbi e1071 ggplot2 graphite igraph MLmetrics reshape2 ROCR SpidermiR]; broken = true; }; + SummarizedBenchmark = derive2 { name="SummarizedBenchmark"; version="2.20.0"; sha256="16gzlkyf76fcd46ck417sxh86smivmaggqvyg0v9v0f4jac7610g"; depends=[BiocGenerics BiocParallel crayon digest dplyr ggplot2 mclust rlang S4Vectors sessioninfo stringr SummarizedExperiment tibble tidyr UpSetR]; broken = true; }; Sushi = derive2 { name="Sushi"; version="1.34.0"; sha256="0adswrbzd93rhy3q56ypwkrk6155vd4zxapvznswyjlxp8ha813q"; depends=[biomaRt zoo]; broken = true; }; SwimR = derive2 { name="SwimR"; version="1.29.0"; sha256="0n58x3i4k3icvhg8z60zlhpszv8bb9pain07nl9rszyvmpi71vg2"; depends=[gplots R2HTML signal]; broken = true; }; TCGAbiolinksGUI = derive2 { name="TCGAbiolinksGUI"; version="1.23.0"; sha256="16757szccczlv1q35y1cnmlkr12s46f63z7ijffpb15q85xlaqdx"; depends=[caret clusterProfiler colourpicker data_table downloader DT ELMER ggplot2 ggrepel maftools pathview plotly readr sesame shiny shinyBS shinydashboard shinyFiles shinyjs stringr SummarizedExperiment TCGAbiolinks TCGAbiolinksGUI_data]; broken = true; }; TDARACNE = derive2 { name="TDARACNE"; version="1.47.0"; sha256="19zf7x2wcfnij1nlh623kim63d6wb3p42mwsn35msds778jvcbxq"; depends=[Biobase Rgraphviz]; broken = true; }; + TNBC_CMS = derive2 { name="TNBC.CMS"; version="1.18.0"; sha256="1syygq9br5icbjbmi1kq9gs7g3bw1vzmy8mlf8ga2rk1lw6ika90"; depends=[e1071 forestplot GGally ggplot2 ggpubr GSVA pheatmap pracma quadprog R_utils RColorBrewer SummarizedExperiment survival]; broken = true; }; TSRchitect = derive2 { name="TSRchitect"; version="1.20.0"; sha256="1v9zz8ny9rwkyz98cv49l9ilh68h8mvm2x44n8i8rvjayc50zi9i"; depends=[AnnotationHub BiocGenerics BiocParallel dplyr GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges readxl Rsamtools rtracklayer S4Vectors SummarizedExperiment]; broken = true; }; TarSeqQC = derive2 { name="TarSeqQC"; version="1.28.0"; sha256="14ima8ymdb91lpkhdnsg6q7ajxs5p1xzzcsjfhixxkm341k45j35"; depends=[BiocGenerics BiocParallel Biostrings cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 Hmisc IRanges openxlsx plyr reshape2 Rsamtools S4Vectors]; broken = true; }; TimeSeriesExperiment = derive2 { name="TimeSeriesExperiment"; version="1.13.0"; sha256="0bdpxxr739qdg92qabfx122k9f43vw2hyxp4yxqlbp37vzgcdf2c"; depends=[DESeq2 dplyr dynamicTreeCut edgeR ggplot2 Hmisc limma magrittr proxy S4Vectors SummarizedExperiment tibble tidyr vegan viridis]; broken = true; }; + TimiRGeN = derive2 { name="TimiRGeN"; version="1.11.0"; sha256="104j3rdl1mfklqvpsr753zlplr001cqbkphbhf2xrcfw8si7bgr2"; depends=[biomaRt clusterProfiler dplyr FreqProf ggdendro gghighlight ggplot2 gplots gtools igraph Mfuzz MultiAssayExperiment RCy3 readxl reshape2 rWikiPathways scales stringr tidyr]; broken = true; }; + TnT = derive2 { name="TnT"; version="1.24.0"; sha256="1y4v2rphdils0rvkjsyfynncvmn1js1n5d5qhqmc2v8rhh1wjyv5"; depends=[Biobase data_table GenomeInfoDb GenomicRanges htmlwidgets IRanges jsonlite knitr S4Vectors]; broken = true; }; TraRe = derive2 { name="TraRe"; version="1.5.0"; sha256="06w5rk2wjam5dhiya9n6kjbjahw4i46cb05zvakcy0f8gwrvb9ic"; depends=[BiocParallel dqrng ggplot2 glmnet gplots gtools hash igraph matrixStats pvclust R_utils SummarizedExperiment]; broken = true; }; Travel = derive2 { name="Travel"; version="1.6.0"; sha256="074v9hl4gzy8081mlas3mjaplchjrmk2bl4f5nkdjclh46xf3wgg"; depends=[Rcpp]; broken = true; }; XCIR = derive2 { name="XCIR"; version="1.7.0"; sha256="0n42pw01wv1sk06hby9kwijx6zwaw4lrlpsa0wlkrkf323slkllw"; depends=[biomaRt data_table ggplot2 IRanges readxl S4Vectors seqminer VariantAnnotation]; broken = true; }; affyPara = derive2 { name="affyPara"; version="1.51.0"; sha256="01165f84snc3ksk0ghw631i2l5jklp4n826jwy5926wvxy3zlwz0"; depends=[affy affyio aplpack snow vsn]; broken = true; }; alpine = derive2 { name="alpine"; version="1.26.0"; sha256="1md4m9ln1mpxf7d2h7jnsjyi4zrviiqn9fzk1gkz2n6qj7jwpqbb"; depends=[Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph IRanges RBGL Rsamtools S4Vectors speedglm stringr SummarizedExperiment]; broken = true; }; alsace = derive2 { name="alsace"; version="1.30.0"; sha256="17adr64g3l2syj0shi57nrvx105w7wrkiqm0qp3hwlk1ivmnadzn"; depends=[ALS ptw]; broken = true; }; + beadarraySNP = derive2 { name="beadarraySNP"; version="1.68.0"; sha256="1vrizh7fpzv1w2gki0qxhphrfj1jj6m6bjsjsbw0b4n4invybzps"; depends=[Biobase quantsmooth]; broken = true; }; bigPint = derive2 { name="bigPint"; version="1.15.0"; sha256="1r9gr5f9as09ifagal5k7713h95qjw508cf8ny3j1jmqd24v6xhs"; depends=[DelayedArray dplyr GGally ggplot2 gridExtra hexbin Hmisc htmlwidgets plotly plyr RColorBrewer reshape shiny shinycssloaders shinydashboard stringr SummarizedExperiment tidyr]; broken = true; }; + biodbMirbase = derive2 { name="biodbMirbase"; version="1.5.0"; sha256="17clip9l8as9pz390bqgj07jxp1rijis2f5hj53s6vqaqmiyz4il"; depends=[biodb chk R6 stringr]; broken = true; }; + brainflowprobes = derive2 { name="brainflowprobes"; version="1.16.0"; sha256="06gga72ns7h9c6mdbvbj8afpkyizg7maazriilvaq433h6s1pgqb"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 bumphunter cowplot derfinder derfinderPlot GenomicRanges GenomicState ggplot2 RColorBrewer]; broken = true; }; bridge = derive2 { name="bridge"; version="1.62.0"; sha256="02rf15f3r1kazxml8mk9mi1zxgglsdfrpbg7ny9w0s65f413grg8"; depends=[rama]; broken = true; }; caOmicsV = derive2 { name="caOmicsV"; version="1.25.0"; sha256="10i4imjihmssdwfys21fsqng8zfp7sxzkc58m8qmnh6s5sccb3sz"; depends=[bc3net igraph]; broken = true; }; cellTree = derive2 { name="cellTree"; version="1.27.0"; sha256="0yfr59fcbdj03ikkpvw1qcxqrjbkz7nkfmb5m1xr4k9qs39bq9sb"; depends=[gplots igraph maptpx slam topGO topicmodels xtable]; broken = true; }; chromswitch = derive2 { name="chromswitch"; version="1.22.0"; sha256="007wa8980hkpja33ph3b3fjsjrf91cnwc0a7y4014k8xxmmgfdh7"; depends=[Biobase BiocParallel cluster dplyr GenomicRanges gplots IRanges lazyeval magrittr matrixStats NMF rtracklayer S4Vectors tidyr]; broken = true; }; + cliqueMS = derive2 { name="cliqueMS"; version="1.16.0"; sha256="1829i6vqplqyvibb7x6ahb7xk0z2s8amivjldnvr17d7hpggmqma"; depends=[BH igraph matrixStats MSnbase Rcpp RcppArmadillo xcms]; broken = true; }; clonotypeR = derive2 { name="clonotypeR"; version="1.34.0"; sha256="15nnj6c23bcnln1xsmxs7f13m13lvn6did7lvp7ij8gcb0vg2g6q"; depends=[]; broken = true; }; + coMET = derive2 { name="coMET"; version="1.34.0"; sha256="1pkhnfcvrbj9y88qbbvly4arbz22x8zkx0jsvsmn5klg4xp11fdz"; depends=[biomaRt corrplot GenomicRanges gridExtra Gviz hash IRanges psych rtracklayer S4Vectors]; broken = true; }; coexnet = derive2 { name="coexnet"; version="1.19.1"; sha256="0zw8a8pqmajqnv5n6i7fn7krwax81sd4c6wqm4zr61fy2blqzv3h"; depends=[acde affy Biobase GEOquery igraph limma minet rmarkdown siggenes STRINGdb SummarizedExperiment vsn]; broken = true; }; compartmap = derive2 { name="compartmap"; version="1.18.0"; sha256="0lvgwnp5cgn96m9y4snpczfbfs72lxbaa36lnmwa7j07jy4s9108"; depends=[BiocSingular DelayedArray DelayedMatrixStats GenomicRanges ggplot2 HDF5Array Matrix RaggedExperiment reshape2 RMTstat rtracklayer scales SummarizedExperiment]; broken = true; }; conclus = derive2 { name="conclus"; version="1.5.0"; sha256="09rk73sxqxsy0zq07n67jxqbzb1rlxlj0phg6987szdjwxmag6jc"; depends=[AnnotationDbi Biobase BiocFileCache biomaRt clusterProfiler dbscan doParallel dplyr factoextra foreach fpc GEOquery ggplot2 gridExtra org_Hs_eg_db org_Mm_eg_db pheatmap rlang Rtsne scales scater scran SingleCellExperiment stringr SummarizedExperiment]; broken = true; }; + contiBAIT = derive2 { name="contiBAIT"; version="1.30.0"; sha256="1asyfx0mbg0pli2g533xmlppfw0s0f1y4vf2rfrnai4chsh1rh0k"; depends=[BH BiocGenerics BiocParallel clue cluster colorspace data_table diagram DNAcopy exomeCopy GenomicAlignments GenomicFiles GenomicRanges ggplot2 gplots gtools IRanges Rcpp reshape2 Rsamtools rtracklayer S4Vectors TSP]; broken = true; }; copynumber = derive2 { name="copynumber"; version="1.38.0"; sha256="1a664bllaq9pbb5cpd01j919qirylvnm8qd49lwlz89jvqjdri19"; depends=[BiocGenerics GenomicRanges IRanges S4Vectors]; broken = true; }; crisprseekplus = derive2 { name="crisprseekplus"; version="1.26.0"; sha256="1ccz944jwlcnflrdh1aamfc5b03n6pys65b13f049f0x214vqg68"; depends=[AnnotationDbi BiocManager BSgenome CRISPRseek DT GenomicFeatures GenomicRanges GUIDEseq hash shiny shinyjs]; broken = true; }; ctgGEM = derive2 { name="ctgGEM"; version="1.7.0"; sha256="0hmapz96r024r3bws1wf0spd0i81viyma859y9nn93jrwxscrcdb"; depends=[Biobase BiocGenerics igraph Matrix monocle sincell SummarizedExperiment TSCAN]; broken = true; }; @@ -2326,12 +2387,16 @@ in with self; { dpeak = derive2 { name="dpeak"; version="1.12.0"; sha256="1fx2rrcqmjckk5kk3mfa56b1393b2c8sf566q95d8zmlsvkl03w5"; depends=[BSgenome IRanges MASS Rcpp]; broken = true; }; dualKS = derive2 { name="dualKS"; version="1.53.0"; sha256="16cfcylmmcj8x2808529lbpm7qbbrxygic0jkaglhqcdxgrqw3rw"; depends=[affy Biobase]; broken = true; }; eegc = derive2 { name="eegc"; version="1.26.0"; sha256="0m67zjsq2xzk292rp0hdlj8lbfgci2dsdb5hmn4b591fqawwsqbb"; depends=[AnnotationDbi clusterProfiler DESeq2 DOSE edgeR ggplot2 gplots igraph limma org_Hs_eg_db org_Mm_eg_db pheatmap R_utils S4Vectors sna wordcloud]; broken = true; }; + enrichTF = derive2 { name="enrichTF"; version="1.18.0"; sha256="0lhmlxw7mpb76w2agm25v5qzxgf28wfw2xc0fnlqn2sbbfj295y9"; depends=[BiocGenerics BSgenome clusterProfiler GenomeInfoDb GenomicRanges ggplot2 ggpubr heatmap3 IRanges JASPAR2018 magrittr motifmatchr pipeFrame R_utils rmarkdown rtracklayer S4Vectors TFBSTools]; broken = true; }; epihet = derive2 { name="epihet"; version="1.13.0"; sha256="1p5sgb438yj6h0fv0v17dhz1pl32vai5zcbmgpgagrd5829a6a7r"; depends=[data_table doParallel foreach GenomicRanges ggplot2 igraph IRanges pheatmap qvalue ReactomePA Rtsne S4Vectors WGCNA]; broken = true; }; + exomeCopy = derive2 { name="exomeCopy"; version="1.48.0"; sha256="1d3qkr05q8nl3fj0y4qib0q37pwjh004p746nnzk8fmms75l1p11"; depends=[GenomeInfoDb GenomicRanges IRanges Rsamtools]; broken = true; }; + exomePeak2 = derive2 { name="exomePeak2"; version="1.14.3"; sha256="1hvz18hlvljbv0cmdlxzvsl2ysb5m0c5qq2y8jxzsby3zxlqplph"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DESeq2 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges magrittr mclust Rsamtools rtracklayer S4Vectors speedglm SummarizedExperiment]; broken = true; }; farms = derive2 { name="farms"; version="1.52.0"; sha256="1w1bw8bglcmjsz83vc8s5wl1c58x2bvd365k984pxaw3xl9fj92j"; depends=[affy Biobase MASS]; broken = true; }; fcoex = derive2 { name="fcoex"; version="1.13.0"; sha256="085r5s5sqrj2701zk5kv3818ksxvxzd76lknzi6bk1svw4d3lsyc"; depends=[clusterProfiler data_table dplyr FCBF ggplot2 ggrepel igraph intergraph Matrix network pathwayPCA progress scales SingleCellExperiment sna stringr]; broken = true; }; flowCL = derive2 { name="flowCL"; version="1.35.0"; sha256="1jxr0zn3fgm5nqishssxh332mmxfz3fc9zgshn0lbq4avxc2x128"; depends=[graph Rgraphviz]; broken = true; }; flowMap = derive2 { name="flowMap"; version="1.38.0"; sha256="1mjv55cg5q6gx32sn6h5aqzrpjb5awb6489j8dya56fbivjs7zxj"; depends=[abind ade4 doParallel Matrix reshape2 scales]; broken = true; }; flowUtils = derive2 { name="flowUtils"; version="1.59.0"; sha256="11x362dqb9mjlsbq6g1qkb8hhnkvm22z5s3wkgmpyy9kyifjkm26"; depends=[Biobase corpcor flowCore graph RUnit XML]; broken = true; }; + gaggle = derive2 { name="gaggle"; version="1.70.0"; sha256="16jajl03nf8fk29vd4bkj4f1156258skkw3p884ad946ifvabznd"; depends=[graph rJava RUnit]; broken = true; }; gaia = derive2 { name="gaia"; version="2.39.0"; sha256="023mw2dy6dni7h7a1ild1y6l741kp9bmjzzfyi70jipji1jig4pa"; depends=[]; broken = true; }; genbankr = derive2 { name="genbankr"; version="1.27.0"; sha256="0fv87cf2y10ijlb0g1x9g9wh95qyljqb1c7k1ihbnjcg36xkh8lc"; depends=[Biobase BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors VariantAnnotation]; broken = true; }; genotypeeval = derive2 { name="genotypeeval"; version="1.30.0"; sha256="0mi1d86i4v8gafwszy978n61s5pszrsmbh1in4nggdqwvwnvkqnl"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges ggplot2 IRanges rtracklayer VariantAnnotation]; broken = true; }; @@ -2340,26 +2405,32 @@ in with self; { gprege = derive2 { name="gprege"; version="1.39.0"; sha256="12yjyb7a7jc86hdi3a3cavqxfzkhmds1m2vigzw5ihhx6028pa78"; depends=[]; broken = true; }; imageHTS = derive2 { name="imageHTS"; version="1.48.0"; sha256="124pksw08b88bj7l8pckzvgk6sf54d633cnbq2r5il7a09i4caim"; depends=[Biobase cellHTS2 e1071 EBImage hwriter vsn]; broken = true; }; inveRsion = derive2 { name="inveRsion"; version="1.43.0"; sha256="0h2q10xf4x22hy7780w4pvq488921wzjngly8qcc97sa8iacssk3"; depends=[haplo_stats]; broken = true; }; + iterClust = derive2 { name="iterClust"; version="1.24.0"; sha256="0k2hcc7g4ynd9jrk8f286y6gwc4bfs4bnfs8qpj2i8zamwdaldng"; depends=[Biobase cluster]; broken = true; }; iteremoval = derive2 { name="iteremoval"; version="1.15.1"; sha256="0bwl8lzxvf5azwyacv9x16l4kyi8l00xny2s83gp2kng5gyz8602"; depends=[GenomicRanges ggplot2 magrittr SummarizedExperiment]; broken = true; }; logitT = derive2 { name="logitT"; version="1.58.0"; sha256="0wd26k2n29i58iz9nr50xjsvc2s5ynbca0y2y4j9xqbvvpfjzk3v"; depends=[affy]; broken = true; }; mAPKL = derive2 { name="mAPKL"; version="1.28.0"; sha256="0nj2r54djps19lar2sp6bhdi5nkid195xyaqzzam2r7piwr8xv8s"; depends=[AnnotationDbi apcluster Biobase clusterSim e1071 igraph limma multtest parmigene reactome_db]; broken = true; }; maanova = derive2 { name="maanova"; version="1.68.2"; sha256="1rcxvv0vcvksswjd3vry68nmvrbh05p5pica48bwcar93jh70bx9"; depends=[Biobase]; broken = true; }; + macat = derive2 { name="macat"; version="1.76.0"; sha256="1xmlh1bnhaxp2zjimrhyzz0ldl2sv4j0lrrvqdhlk8jbm5j4hzy8"; depends=[annotate Biobase]; broken = true; }; maigesPack = derive2 { name="maigesPack"; version="1.64.0"; sha256="106idgazh2wkv2z63wrbn6f4gaxzkmn95i8583a99f6mqnfbhcqx"; depends=[convert graph limma marray]; broken = true; }; mbOmic = derive2 { name="mbOmic"; version="1.3.0"; sha256="079qs5apyqli7h16c6drmhibmc356rnllxks5ddfnnq7hdzmhdbw"; depends=[cluster clusterSim data_table doParallel igraph psych visNetwork WGCNA]; broken = true; }; metagene = derive2 { name="metagene"; version="2.31.0"; sha256="0kydqb2g1xbkwk5g738f1pyx1hcfmym3z101vawvcjmmgld3kcp8"; depends=[BiocParallel data_table EnsDb_Hsapiens_v86 ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges magrittr matrixStats purrr R6 Rsamtools rtracklayer stringr]; broken = true; }; metavizr = derive2 { name="metavizr"; version="1.21.0"; sha256="1d88f854sn5m2pklsyvkmq05yzjanxlnkz5gpzban62qq1mpvims"; depends=[Biobase data_table digest epivizr epivizrData epivizrServer epivizrStandalone GenomeInfoDb httr metagenomeSeq phyloseq vegan]; broken = true; }; methyAnalysis = derive2 { name="methyAnalysis"; version="1.34.0"; sha256="05k3n7iy5ijidbnblbqqas8dsj8drwzbhyrbs8wl1ypkg51havi0"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt genefilter GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges lumi methylumi org_Hs_eg_db rtracklayer SummarizedExperiment VariantAnnotation]; broken = true; }; miRBaseConverter = derive2 { name="miRBaseConverter"; version="1.24.0"; sha256="04yjfi670lqk4c254isadzaj1mp514i4ns9h7mwdyvagfq6vhsvw"; depends=[]; broken = true; }; - miRSM = derive2 { name="miRSM"; version="1.18.0"; sha256="1slb957ns31zxcnbfs5hp7nx7ypfh5as26s4ih5rvl153a5msd1k"; depends=[BiBitR BicARE biclust Biobase dbscan dynamicTreeCut energy fabia flashClust GFA GSEABase iBBiG igraph isa2 linkcomm MatrixCorrelation MCL mclust miRspongeR NMF org_Hs_eg_db PMA ppclust Rcpp rqubic s4vd SOMbrero subspace SummarizedExperiment WGCNA]; broken = true; }; miRmine = derive2 { name="miRmine"; version="1.22.0"; sha256="1d0ni3lavpiv2qzwlmrsjym75cip3i9q1bg9rwa04h61rz2smylg"; depends=[SummarizedExperiment]; broken = true; }; miRspongeR = derive2 { name="miRspongeR"; version="2.4.0"; sha256="1mzh0cjm2sbcxw3wgfa6yg98ynl74x41g15vsf54n1m1ys5s7xk0"; depends=[clusterProfiler corpcor doParallel DOSE foreach igraph linkcomm MCL org_Hs_eg_db Rcpp ReactomePA SPONGE survival]; broken = true; }; multiOmicsViz = derive2 { name="multiOmicsViz"; version="1.24.0"; sha256="129k094ml403w25k3kipzbavx78p14jxq40a8d733qyqp8mcnlrs"; depends=[doParallel foreach SummarizedExperiment]; broken = true; }; multiSight = derive2 { name="multiSight"; version="1.7.0"; sha256="1v2ml1qh250lidm5a0xw4b3xbxd2as86p703qn5s8m1xi6l89b9c"; depends=[anyLib biosigner caret clusterProfiler config DESeq2 dplyr DT easyPubMed enrichplot ggnewscale golem htmltools igraph infotheo metap mixOmics networkD3 ppcor R6 ReactomePA rmarkdown rWikiPathways shiny shinydashboard stringr]; broken = true; }; + nanotatoR = derive2 { name="nanotatoR"; version="1.18.0"; sha256="1nnh4g4b7k6mp922pr52sxlrh6wvfyx7jhckmwrd12l1yjq010pb"; depends=[AnnotationDbi curl dplyr GenomicRanges hash httr knitr openxlsx org_Hs_eg_db rentrez rlang stringr testthat tidyverse XML]; broken = true; }; + netOmics = derive2 { name="netOmics"; version="1.8.0"; sha256="03nyjvcr2hldsfifj0dix1bc79z05i9x2hgc5z2g9hd1jyijljyd"; depends=[AnnotationDbi dplyr ggplot2 GO_db gprofiler2 igraph magrittr minet purrr RandomWalkRestartMH tibble tidyr]; broken = true; }; + netbiov = derive2 { name="netbiov"; version="1.36.0"; sha256="0igqb3wdxvjrbh4w664934yycac3qwcyfhmsz4cf2h5rif23xagf"; depends=[igraph]; broken = true; }; netboxr = derive2 { name="netboxr"; version="1.9.0"; sha256="1brnm60745s2axls4p6qcxipjjr3ph9ijg1q604fgm42rf6i7qzm"; depends=[clusterProfiler data_table DT gplots igraph jsonlite plyr RColorBrewer]; broken = true; }; networkBMA = derive2 { name="networkBMA"; version="2.35.0"; sha256="0xa0b977apbr6p9kqk38582af635kp99csj32bsn2bf8pjsmd4d2"; depends=[BH BMA leaps Rcpp RcppArmadillo RcppEigen]; broken = true; }; + nondetects = derive2 { name="nondetects"; version="2.32.0"; sha256="0302mg5pbvbzp9rhm6wg4lfa7c7lkndysx35x8b1zskc4b1v76cv"; depends=[arm Biobase HTqPCR limma mvtnorm]; broken = true; }; oneSENSE = derive2 { name="oneSENSE"; version="1.20.0"; sha256="1lzb8i3frv3va2q28glwnjwszrynhky5y8fx10q4h52p2wqgc4v3"; depends=[flowCore gplots plotly Rtsne scatterplot3d shiny shinyFiles webshot]; broken = true; }; pathVar = derive2 { name="pathVar"; version="1.30.0"; sha256="1q0m4yb4jvi61f3hl7mpbnl9y0y4pqhspi1gn3wp5lf86j8c40jp"; depends=[data_table EMT ggplot2 gridExtra Matching mclust]; broken = true; }; perturbatr = derive2 { name="perturbatr"; version="1.13.0"; sha256="0ssk8cr42hibn917s2z2nzcdan54c7xiydypbi8f3g4w68q4ly31"; depends=[assertthat diffusr doParallel dplyr foreach formula_tools ggplot2 igraph lazyeval lme4 magrittr rlang scales tibble tidyr]; broken = true; }; + phemd = derive2 { name="phemd"; version="1.18.0"; sha256="174jp26insq2mwf9yw9bls4i9b2a8vccfkrg2h1dzvyyk513bi83"; depends=[Biobase BiocGenerics cluster cowplot destiny ggplot2 igraph maptree monocle phateR pheatmap pracma RANN RColorBrewer reticulate Rtsne S4Vectors scatterplot3d Seurat SingleCellExperiment SummarizedExperiment transport VGAM]; broken = true; }; pkgDepTools = derive2 { name="pkgDepTools"; version="1.63.0"; sha256="10q0z1ps073py82zqii4sfdhnpvcyj4sx1yx3lzy5c41l8py6lag"; depends=[graph RBGL]; broken = true; }; plethy = derive2 { name="plethy"; version="1.36.0"; sha256="09929w6rd84hvz6fiydd5v0php9gvbvxgvsnxvkzwyxfmmmx1dzr"; depends=[Biobase BiocGenerics DBI ggplot2 IRanges plyr RColorBrewer reshape2 RSQLite S4Vectors Streamer]; broken = true; }; ppiStats = derive2 { name="ppiStats"; version="1.62.0"; sha256="0w5gkfah2y50x4wj5fn8i6ycx1x013mn9w4bs8r2vfqabpws1a81"; depends=[Biobase Category graph lattice RColorBrewer]; broken = true; }; @@ -2371,17 +2442,25 @@ in with self; { pwrEWAS = derive2 { name="pwrEWAS"; version="1.14.0"; sha256="1913h2syad9mfspxjvmrwm0mrcklbcl89lj04rn5x0xgfk8rk58a"; depends=[abind BiocManager CpGassoc doParallel doSNOW foreach genefilter ggplot2 limma pwrEWAS_data shiny shinyBS shinyWidgets truncnorm]; broken = true; }; qrqc = derive2 { name="qrqc"; version="1.52.0"; sha256="0411477y7nazlwbz3pfszr1wfas6qd0g0iz0p9pmq16dw8pzkgg6"; depends=[Biostrings biovizBase brew ggplot2 plyr reshape Rhtslib testthat xtable]; broken = true; }; rama = derive2 { name="rama"; version="1.72.0"; sha256="0i6crxnzhwxnc55xh2rv36jfwh4bd30alw1f05ixdrxwqwsslbpy"; depends=[]; broken = true; }; + restfulSE = derive2 { name="restfulSE"; version="1.24.0"; sha256="0i40yfvynxy34jfkvzyvjwvxf89zi4pvy9m9i0bk93l17gyhnjyl"; depends=[AnnotationDbi AnnotationHub bigrquery Biobase DBI DelayedArray dplyr ExperimentHub GO_db magrittr reshape2 rhdf5client rlang S4Vectors SummarizedExperiment]; broken = true; }; + rqt = derive2 { name="rqt"; version="1.28.0"; sha256="02yvwp68c0xx1wa41hfwmq5zjskqk3jg6z1hvivi6x3l5g2xfwah"; depends=[car CompQuadForm glmnet Matrix metap pls ropls RUnit SummarizedExperiment]; broken = true; }; savR = derive2 { name="savR"; version="1.37.0"; sha256="13wiw7isdmpwhynxjrhimy9yglcz1108k7nwa98vq9czq49zpada"; depends=[ggplot2 gridExtra reshape2 scales XML]; broken = true; }; scAlign = derive2 { name="scAlign"; version="1.12.0"; sha256="1mlhxwsfrmhysa5mcyx7vf2jn49snf41yb7xqmyi40wilj9h8qlb"; depends=[FNN ggplot2 irlba purrr Rtsne Seurat SingleCellExperiment tensorflow]; broken = true; }; scClassifR = derive2 { name="scClassifR"; version="1.2.0"; sha256="0p9l9q5ina0axrqvqn1y5wkfqi0nacxm3nm6ny34j53znv07b2zz"; depends=[ape caret data_tree dplyr e1071 ggplot2 kernlab pROC ROCR Seurat SingleCellExperiment SummarizedExperiment]; broken = true; }; + scClassify = derive2 { name="scClassify"; version="1.14.0"; sha256="1il45fr3fq520jg2hi1b729wg82vhr826x9bh6lli743sjl2rmbf"; depends=[BiocParallel Cepo cluster diptest ggplot2 ggraph hopach igraph limma Matrix mgcv minpack_lm mixtools proxy proxyC S4Vectors statmod]; broken = true; }; scMAGeCK = derive2 { name="scMAGeCK"; version="1.9.1"; sha256="1i6l8jxrd66aqk3m9212wsi8jqklvs0agsqrllvf9mrh16js4vby"; depends=[ggplot2 Seurat]; broken = true; }; + seqCNA = derive2 { name="seqCNA"; version="1.48.0"; sha256="0qqkpgpjj2rywr1y1qj3ffjlxak7fg15jkznz62r7k6r794z45ma"; depends=[adehabitatLT doSNOW GLAD seqCNA_annot]; broken = true; }; + seqbias = derive2 { name="seqbias"; version="1.50.0"; sha256="18pdpi855y1hhka96xc5886nqffjn1jhz9jr9p305iikdrsvmjp1"; depends=[Biostrings GenomicRanges Rhtslib zlibbioc]; broken = true; }; sigPathway = derive2 { name="sigPathway"; version="1.66.2"; sha256="0k86hlz7zbbw7559bd2sl59pr441kihgwvg8nr75mj8d50n783sy"; depends=[]; broken = true; }; slinky = derive2 { name="slinky"; version="1.12.0"; sha256="05ywydvyz3jnzbhabhz1sd61hpy9nb22512zpbi48mv5wic1sv3v"; depends=[curl dplyr foreach httr jsonlite readr rhdf5 SummarizedExperiment tidyr]; broken = true; }; + snapCGH = derive2 { name="snapCGH"; version="1.72.0"; sha256="0knjspxzc3z5dhx0a6kx9rkic85w65l84vy552x5bv8jzxkcwrsj"; depends=[aCGH cluster DNAcopy GLAD limma tilingArray]; broken = true; }; sojourner = derive2 { name="sojourner"; version="1.11.0"; sha256="1s0iqzn65s9g4yymy059z122i9wvgkcb5718snzxhj7mkqjzwhhc"; depends=[dplyr EBImage fitdistrplus ggplot2 gridExtra lattice MASS mclust minpack_lm mixtools mltools nls2 pixmap plyr R_matlab Rcpp reshape2 rlang scales shiny shinyjs sp truncnorm]; broken = true; }; sparseDOSSA = derive2 { name="sparseDOSSA"; version="1.24.0"; sha256="1xy9kd5a9vilwkgr4xw6lcdwgwykg7q7kildpfw4gqymd1frnjp6"; depends=[MASS MCMCpack optparse tmvtnorm]; broken = true; }; sscore = derive2 { name="sscore"; version="1.72.0"; sha256="02y684iaryms7099k9idrvw0my52jj3d4hl949ai1jknaa19hmil"; depends=[affy affyio]; broken = true; }; + tenXplore = derive2 { name="tenXplore"; version="1.24.0"; sha256="1sk8xxvrmxkqlz7hq6w10hsjf1x8g06gbaas75hx4m0f1hz6pdwm"; depends=[AnnotationDbi matrixStats ontoProc org_Mm_eg_db restfulSE shiny SummarizedExperiment]; broken = true; }; tofsims = derive2 { name="tofsims"; version="1.22.0"; sha256="0da4843wbcr821yp8z3z4vd81qpm2lblckgd01fm89lmwj393z65"; depends=[ALS alsace KernSmooth ProtGenerics Rcpp RcppArmadillo signal]; broken = true; }; trena = derive2 { name="trena"; version="1.22.2"; sha256="1xjhqm2g53kgcnnqhs5l3vn525h7amaz4hvsskjp5zb0gkfpiwh1"; depends=[AnnotationDbi biomaRt Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 DBI GenomicRanges glmnet lassopv MotifDb org_Hs_eg_db randomForest RMySQL RPostgreSQL RSQLite SNPlocs_Hsapiens_dbSNP150_GRCh38 WGCNA xgboost]; broken = true; }; tscR = derive2 { name="tscR"; version="1.11.0"; sha256="19jpmyb6dly7l0418c1z0dlb936wjh6nwkb0mvk13ym19qgv1my7"; depends=[class cluster dplyr dtw GenomicRanges ggplot2 gridExtra IRanges knitr latex2exp prettydoc RColorBrewer rmarkdown S4Vectors SummarizedExperiment]; broken = true; }; tspair = derive2 { name="tspair"; version="1.53.0"; sha256="04xxrm313mnknhc38vl1sx6hic2g1x1xaa5772qlc7ip957hz85k"; depends=[Biobase]; broken = true; }; + unifiedWMWqPCR = derive2 { name="unifiedWMWqPCR"; version="1.38.0"; sha256="0v3jpnm3nq66xvckmc8447xl7wngfhhiwq6vjx54wgc6f586vmgd"; depends=[BiocGenerics HTqPCR]; broken = true; }; } diff --git a/pkgs/development/r-modules/cran-packages.nix b/pkgs/development/r-modules/cran-packages.nix index 1e08be5368c05..08c7b13577ed4 100644 --- a/pkgs/development/r-modules/cran-packages.nix +++ b/pkgs/development/r-modules/cran-packages.nix @@ -34,6 +34,7 @@ in with self; { ADDT = derive2 { name="ADDT"; version="2.0"; sha256="044bb1jw2m8vwk5q8l7rlz4kqphjvy8i9d59rjg0k5q5l9vczfrp"; depends=[coneproj Matrix nlme]; }; ADER = derive2 { name="ADER"; version="1.5"; sha256="1zby06fw171inlri2k0k4n5lggsr9zxzad2pv08882md1klqwkpw"; depends=[]; }; ADGofTest = derive2 { name="ADGofTest"; version="0.3"; sha256="0ik817qzqp6kfbckjp1z7srlma0w6z2zcwykh0jdiv7nahwk3ncw"; depends=[]; }; + ADLP = derive2 { name="ADLP"; version="0.1.0"; sha256="12h9x1bfxispjz5ybwmz7vyf6jaj8wmdpd2crrx0vlivwx11ryxa"; depends=[]; }; ADMM = derive2 { name="ADMM"; version="0.3.3"; sha256="04biinzr0x3jkwss00q6zxfnzk62dafc6386z5vfqs4ch0ifh60n"; depends=[doParallel foreach Matrix Rcpp RcppArmadillo Rdpack]; }; ADMMsigma = derive2 { name="ADMMsigma"; version="2.1"; sha256="1943dza086s22pr0yz41wzn9cdg11x7fl9zr3w012865yj219m7l"; depends=[doParallel dplyr foreach ggplot2 Rcpp RcppArmadillo RcppProgress]; }; ADMUR = derive2 { name="ADMUR"; version="1.0.3"; sha256="1wv5frav8vjkvsqwng9zddajmb7rdm4iqrikw9cjpqdpk7njl8ph"; depends=[mathjaxr scales zoo]; }; @@ -51,7 +52,7 @@ in with self; { AFM = derive2 { name="AFM"; version="2.0"; sha256="1l0yd68h8vlii1437zhyrxj6fq1ghfaqclk860c25q2d055ajnqd"; depends=[data_table dbscan fftwtools fractaldim ggplot2 gridExtra gstat igraph mixtools moments plyr png pracma rgl scales shiny shinyjs sp stringr]; }; AFR = derive2 { name="AFR"; version="0.3.5"; sha256="0ismghsl2qi2q81c5ipgdxs6s6rw3kk8sz9yx16g6scnbyisa41y"; depends=[car cli forecast ggplot2 goftest gridExtra lmtest nlme nortest olsrr rlang tseries xts zoo]; }; AFheritability = derive2 { name="AFheritability"; version="0.1.0"; sha256="03w0a4z2x539ykyzdxm1mfqkhzz03cg0aqvgi062jrrm5m6f57ix"; depends=[ggplot2 mvtnorm reshape2 shiny]; }; - AGD = derive2 { name="AGD"; version="0.39"; sha256="0hmq684snnffc2v7vmns4ky200a6zh1ggiap03n5cvpb3nlqc6lr"; depends=[gamlss gamlss_dist]; }; + AGD = derive2 { name="AGD"; version="0.45.0"; sha256="02dvbqyym3l642vxhlx7ay6dj1sf1ns207ig81h3fz1w3gy9wn20"; depends=[gamlss gamlss_dist]; }; AGHmatrix = derive2 { name="AGHmatrix"; version="2.1.4"; sha256="1ji022h11ijfjicbvc5hgxpf6rfs7mm07nxrjlk7lrl699gi1xh2"; depends=[Matrix zoo]; }; AGPRIS = derive2 { name="AGPRIS"; version="2.0"; sha256="0c6aqrfl0iqpsdk4njzda60a8hcrm2637zwc5cdkrl9p2ayqj00c"; depends=[Matrix matrixcalc maxLik plyr sp spacetime spdep]; }; AHM = derive2 { name="AHM"; version="1.0.1"; sha256="00r1rn7d64a18rckbxvla5yapqv00p9ajxv72fx7s6p80kfal89w"; depends=[devtools dplyr glmnet Matrix mixexp plgp quadprog tibble tidyr]; }; @@ -65,17 +66,17 @@ in with self; { AICcmodavg = derive2 { name="AICcmodavg"; version="2.3-3"; sha256="0ylzd6fz5p86fdb8yily2v8bn8xz5mm6w19ch6gpp48jzkqvama0"; depends=[lattice MASS Matrix nlme survival unmarked VGAM xtable]; }; AID = derive2 { name="AID"; version="2.9"; sha256="0s7020vh93rnyhcfsmsn1swffrbg1fx3pqq2bd043m4b90yrlzpc"; depends=[ggplot2 MASS meta nortest psych stringr tseries]; }; AIPW = derive2 { name="AIPW"; version="0.6.3.2"; sha256="1iqq665qigw9dmc62x2dz1nvrk8s65ph0a3k2p7mkznr9frshhi2"; depends=[future_apply ggplot2 progressr R6 Rsolnp SuperLearner]; }; - AIUQ = derive2 { name="AIUQ"; version="0.5.1"; sha256="00l6cqwnnxlvccx2fzy4nbww51m2jal90xm6071p5fy5d67h96ld"; depends=[fftwtools plot3D SuperGauss]; }; + AIUQ = derive2 { name="AIUQ"; version="0.5.2"; sha256="00abxp3sd5ri4rny38q0125i8bb71hv5riicd7m8n9hz9hgww12j"; depends=[fftwtools plot3D SuperGauss]; }; ALDqr = derive2 { name="ALDqr"; version="1.0"; sha256="0gk8hxh4p0fi47sf1zsvvxxbzp38vzk60wh8hmc63phnjab6qkv4"; depends=[HyperbolicDist sn]; }; ALEPlot = derive2 { name="ALEPlot"; version="1.1"; sha256="0bakl8a7xda7vh9zsc66kkd5w5jmb5j28kfwpfq2ifvk2mrakr3w"; depends=[yaImpute]; }; + ALFAM2 = derive2 { name="ALFAM2"; version="4.1.3"; sha256="1l2l792zv8njg7iii7yzr8fksfijmp6r45a421bamg5r1wa3v1rx"; depends=[Rcpp]; }; ALS = derive2 { name="ALS"; version="0.0.7"; sha256="184d6xr4mgs78jvi7xa4njrq6p625i9sx69wak6mdn53qpl9b8ap"; depends=[Iso nnls]; }; ALSCPC = derive2 { name="ALSCPC"; version="1.0"; sha256="0ippxzq5qwb9dnpvm1kxhc0fxh83rs9ny5rcvd30w2bp632q9qdx"; depends=[]; }; - ALSM = derive2 { name="ALSM"; version="0.2.0"; sha256="1g7zk8q462j4faq5wzzghkjc003ny6rj8hrymsgvh3fg3a72lvy3"; depends=[car leaps SuppDists]; }; ALTopt = derive2 { name="ALTopt"; version="0.1.2"; sha256="1nbbvniramajg6k83xqgx7r0abjrfja8zz0y3g3j8qmvbcqmjx13"; depends=[cubature lattice]; }; ALUES = derive2 { name="ALUES"; version="0.2.1"; sha256="12fayxz0cb8wibccgz62gzrbkwzw2y4xljixrh02i1lbfwgsky14"; depends=[Rcpp]; }; ALassoSurvIC = derive2 { name="ALassoSurvIC"; version="0.1.1"; sha256="0asaip7mq1brahirm025d57gk1fgysbmhi6jypf2jihai7dl4jg2"; depends=[Rcpp]; }; AMAPVox = derive2 { name="AMAPVox"; version="2.2.1"; sha256="10gb0k3msw2jmrq2dl0fm7636frsn7if9gsdxi6zgh0vpha6dqwz"; depends=[curl data_table dplyr jsonlite rappdirs stringr]; }; - AMCP = derive2 { name="AMCP"; version="1.0.1"; sha256="14fbb2p4dbgi7i31xxavrldw4wnd4cjjh56ys63rivkswi1hhzj2"; depends=[]; }; + AMCP = derive2 { name="AMCP"; version="1.0.2"; sha256="0xp59zah72h7kvqnhyrx6p9nx0pghi49lgib3f1ins1zlxdv2j88"; depends=[]; }; AMCTestmakeR = derive2 { name="AMCTestmakeR"; version="1.0.0"; sha256="1vgncc61gmqhax2a7072jb36bzkycv80xqihkr5qs8jxnqqkndxd"; depends=[]; }; AMIM = derive2 { name="AMIM"; version="1.0.0"; sha256="1gpfsayic0hw2rwswxw7cwa0v47l1v7l4qhckbrwyq3dcxgl2rnv"; depends=[data_table]; }; AMModels = derive2 { name="AMModels"; version="0.1.4"; sha256="18h075bzk8s75b3zmjd0x8c6dpl40445d4kv8n0p4ldnx80b1aha"; depends=[unmarked]; }; @@ -88,23 +89,25 @@ in with self; { ANOVAIREVA = derive2 { name="ANOVAIREVA"; version="0.1.0"; sha256="04z2g79nnh5yhn4aqw0i7ck2b1z5dbasf1zp1sj6rjjrp9aqmaa6"; depends=[car dplyr ggplot2 plotly rmarkdown shiny]; }; ANOVAShiny = derive2 { name="ANOVAShiny"; version="0.1.0"; sha256="1z8wi8c8j3rlchfk1vx101qz1r9j2jl5lfh72y5lqsisqxl2fyyz"; depends=[DescTools dplyr HH rhandsontable rmarkdown shiny]; }; ANOVAShiny2 = derive2 { name="ANOVAShiny2"; version="0.1.0"; sha256="0bnxfg5c37wi5g53jd0zqq31yx29zvlk2m2jh6jlwki8khpp9y00"; depends=[DescTools dplyr HH rhandsontable rmarkdown shiny]; }; + ANSM5 = derive2 { name="ANSM5"; version="1.1.0"; sha256="10drc2199ffnl70ja6512wdwhb14ky73j0fvbhvhqxjhka1gfiwi"; depends=[]; }; AOV1R = derive2 { name="AOV1R"; version="0.1.0"; sha256="0dv7k0mifybkarpwqyla5j6cvw9dcch09wvdq09ra9bsf4vyk652"; depends=[cellranger data_table lazyeval purrr]; }; APCI = derive2 { name="APCI"; version="1.0.7"; sha256="1a3ghbxsvlq3z8nk6xr5jvmpxala9axfm3wd8i6mhjbsfyq8ijv6"; depends=[data_table dplyr gee ggplot2 ggpubr magrittr stringr survey]; }; - APCalign = derive2 { name="APCalign"; version="0.1.3"; sha256="1kbkwpf7lzg7lznl0ysnwwilmklqyqd02qc1vl0pfbd407pqlyyv"; depends=[arrow crayon curl dplyr forcats httr jsonlite purrr readr rlang stringi stringr tibble]; }; + APCalign = derive2 { name="APCalign"; version="1.0.1"; sha256="0v1m3m6r85yip449pcbn7vk3c4zm0y3w4lf9rwqv3cis8gd9xfap"; depends=[arrow crayon curl dplyr httr jsonlite purrr readr rlang stringdist stringi stringr]; }; APCanalysis = derive2 { name="APCanalysis"; version="1.0"; sha256="11snn5i8zyjpzf58ica762fpp14v7x5h8a8iwx4s4v81pgvlx862"; depends=[]; }; APCtools = derive2 { name="APCtools"; version="1.0.4"; sha256="0xp90p7q3a33cqsyh6n2gcsfnq9gchm5vcl13s72gqyfx4jjcnv7"; depends=[checkmate colorspace dplyr ggplot2 ggpubr knitr mgcv scales stringr tidyr]; }; APFr = derive2 { name="APFr"; version="1.0.2"; sha256="1vax7rfccds6qz3bi6n1h3nzl9jnxpwk331wmpsbqlk23md3m4g4"; depends=[]; }; APIS = derive2 { name="APIS"; version="2.0.4"; sha256="02s7cpzsp53wk3k4cm6l3hpkc3f191zhg22vwbf8va7dni3d24rq"; depends=[cowplot data_table doParallel dplyr DT foreach ggplot2 gridExtra htmltools plotly rlang shiny shinyBS shinythemes]; }; APPEstimation = derive2 { name="APPEstimation"; version="0.1.1"; sha256="1bg9ma4i3k3xdgyk2h4f368gqnczvlhvjw4114iznmrv1wl4g25c"; depends=[densratio]; }; - APackOfTheClones = derive2 { name="APackOfTheClones"; version="1.0.0"; sha256="0wbkrnx8p06r75hk0gffasrykdnm4hdlbf45p5zzw0pnyzf2s49v"; depends=[data_table dplyr ggforce ggplot2 hash lifecycle Rcpp rlang Seurat]; }; + APackOfTheClones = derive2 { name="APackOfTheClones"; version="1.2.0"; sha256="1wirzf37n5xl0y3g9n9ic6vyaiyzmx9sip1qg4bilaqn7nazmq90"; depends=[dplyr ggforce ggplot2 hash lifecycle magrittr Rcpp rlang Seurat SeuratObject]; }; APtools = derive2 { name="APtools"; version="6.8.8"; sha256="171aydyd7s8qll7djl4ysy596wxdf5wfwpqwfi14jjglc9r9qrrr"; depends=[cmprsk survival]; }; - AQEval = derive2 { name="AQEval"; version="0.5.2"; sha256="0iac6bcrbhiaxz05vmfmb99g1060r36z1qh3imbwri7m16v0gx59"; depends=[dplyr ggplot2 ggtext loa lubridate mgcv openair purrr segmented strucchange tidyr]; }; + AQEval = derive2 { name="AQEval"; version="0.5.7"; sha256="07f0jgk9hb6gnnsj0vic202smyr5n7xrfrwcaldc6v2lm7sxk5dx"; depends=[dplyr ggplot2 ggtext loa lubridate mgcv openair purrr segmented strucchange tidyr]; }; AQLSchemes = derive2 { name="AQLSchemes"; version="1.7-2"; sha256="1lnx2d1lwjzg6wc0kxdkh1lj00057iyvynl6m8nmmg7p8vz4r5jh"; depends=[]; }; AQuadtree = derive2 { name="AQuadtree"; version="1.0.4"; sha256="0i1qp1xr51l3gfvgnyyka06g4khj62hzxxkbsnlkv235i2bwnpzd"; depends=[dplyr sp]; }; + AQuality = derive2 { name="AQuality"; version="1.0"; sha256="0zjv5wwdr4ivm1nx1yw27n1fxajxv9mdljd5jj95bv2wpvkn0pcz"; depends=[]; }; AR = derive2 { name="AR"; version="1.1"; sha256="1wn4g2997c4vc3mzq2pv8ld0ryp0i78v4zlqqryvhshxgnz4f2pr"; depends=[DISTRIB]; }; ARCensReg = derive2 { name="ARCensReg"; version="3.0.1"; sha256="0qrzxa93cj1ql4iw93ksk58ycfgmncry7q29axhydwh9hsh3lyms"; depends=[ggplot2 gridExtra matrixcalc msm mvtnorm numDeriv qqplotr Rcpp RcppArmadillo Rdpack tmvtnorm]; }; ARCokrig = derive2 { name="ARCokrig"; version="0.1.2"; sha256="0pk0y0gsw681py0vwizxvh1jqjnapzqfr0mbdpli1sray55xbjr2"; depends=[ggplot2 mvtnorm Rcpp RcppArmadillo RcppEigen]; }; - ARDECO = derive2 { name="ARDECO"; version="1.0.0"; sha256="0nq86z5hbk1wksc4l82va433smlszy06z5z2vxhzj774jz2y9i0k"; depends=[dplyr ghql httr jsonlite rjstat tidyr]; }; + ARDECO = derive2 { name="ARDECO"; version="1.0.1"; sha256="1m249r65kh18v57wlhg9fv26fla5sbxqfqm725f95677ck852jf2"; depends=[dplyr ghql httr jsonlite rjstat tidyr]; }; ARDL = derive2 { name="ARDL"; version="0.2.4"; sha256="02yimcsbw8fgv0qslxp3f38k6wzaxwmp0f8f0k0nxx5bnlkc9c4c"; depends=[aod dplyr dynlm ggplot2 gridExtra lmtest msm stringr zoo]; }; ARGOS = derive2 { name="ARGOS"; version="0.1.1"; sha256="0qjngax72mz4zhqlb7s8zzl0n3524crp67vmz3mpy2s5hdl3kz83"; depends=[boot deSolve glmnet magrittr Matrix Metrics signal tidyr tidyverse]; }; ARHT = derive2 { name="ARHT"; version="0.1.0"; sha256="1fz81a202r8vk655dg6a03zfq3gfkimqjvmc95k3j02xz0iv58kn"; depends=[]; }; @@ -117,6 +120,7 @@ in with self; { ART = derive2 { name="ART"; version="1.0"; sha256="186w1ivj5v3h906crl953qxgai5wiznaih83dgvwgnmabs9p1wvk"; depends=[car]; }; ARTofR = derive2 { name="ARTofR"; version="0.4.1"; sha256="1dw9aascnqr5cbk8a862rlma94b39ndgkrhf826qf4k58y92nf5q"; depends=[bannerCommenter clipr rstudioapi shiny]; }; ARTool = derive2 { name="ARTool"; version="0.11.1"; sha256="16awxcncyhry0ygk8gdvlff787837rr8qsyg1pxd11w4v1llrqrf"; depends=[car dplyr emmeans lme4 magrittr plyr]; }; + ARUtools = derive2 { name="ARUtools"; version="0.6.2"; sha256="0qgx1flyxqaqrd7idfwaaf9y58qmkw6967a0n6m9y4p21n5zsck9"; depends=[dplyr fs glue here hms lifecycle lubridate lutz parzer purrr readr rlang seewave sf spsurvey stringr suncalc tidyr units withr]; }; ARpLMEC = derive2 { name="ARpLMEC"; version="2.4.1"; sha256="1d6gvgbnj19dislzjlxn7i0iq7h56zz7hm9x5l865ji790b9smqw"; depends=[expm LaplacesDemon MASS mnormt numDeriv relliptical TruncatedNormal]; }; ASGS_foyer = derive2 { name="ASGS.foyer"; version="0.3.3"; sha256="1zvps8d20ig863dv3jm1pjj9icy88dk378a9j8f0gcgafz5cxi6g"; depends=[sp]; }; ASMap = derive2 { name="ASMap"; version="1.0-7"; sha256="04byjdz3dzgf06bmmpvslihya23lanl8dmjbq22vvwlhi82f88im"; depends=[fields gtools lattice qtl RColorBrewer]; }; @@ -134,9 +138,12 @@ in with self; { AVGAS = derive2 { name="AVGAS"; version="0.1.0"; sha256="0s0h6rpsni73a0j679g22ngpaazdfifxpi7mwpa7ac3p0kdzvji0"; depends=[dplyr ggplot2 Matrix pracma selectiveInference VariableScreening]; }; AWR = derive2 { name="AWR"; version="1.11.189-1"; sha256="1imvpmq6br0z7l67w66a5s1ylbv6xvypj0wc09bmjy7sapdmkn4x"; depends=[rJava]; }; AWR_Kinesis = derive2 { name="AWR.Kinesis"; version="1.7.6"; sha256="0ak2ry5zj6gb9g6laabv0ym3i1vqdwl56g6k58fkpjb87rlb2hbp"; depends=[AWR jsonlite logger rJava]; }; + AZIAD = derive2 { name="AZIAD"; version="0.0.3"; sha256="0nzd3y4kcb628f1h0xpslx2nva8pv6i3mmp9vm5c49xiq43d82cz"; depends=[corpcor doParallel EnvStats extraDistr foreach QRM]; }; AalenJohansen = derive2 { name="AalenJohansen"; version="1.0"; sha256="0w7fj7l2pyz2y1dywpkdxb9qc4v89d57l4ddnjraxsfppk5ga3i4"; depends=[]; }; Ac3net = derive2 { name="Ac3net"; version="1.2.2"; sha256="1ns4n0xxz6p34c11bj0k7nzgmyqr9mis2b0g5nfz37dbikndyqyz"; depends=[data_table]; }; AcademicThemes = derive2 { name="AcademicThemes"; version="0.0.2"; sha256="10v7li7d26kaj5v608bnyrgqxsx12rq3czyb59hbrb5428vsv99x"; depends=[ggplot2]; }; + AccelStab = derive2 { name="AccelStab"; version="2.0.1"; sha256="072wm4421bir8ij1g5zj0rn26h28vz7np6glmvapv18q4kfz1x88"; depends=[dplyr ggplot2 minpack_lm mvtnorm scales]; }; + AcceptReject = derive2 { name="AcceptReject"; version="0.1.2"; sha256="137qlqkazh665d7wvxkhxfz2a5ss3hy4acbc6jzbk7vq4qpbcj0i"; depends=[assertthat cli ggplot2 glue numDeriv purrr Rcpp RcppArmadillo rlang scales scattermore]; }; AcceptanceSampling = derive2 { name="AcceptanceSampling"; version="1.0-10"; sha256="1sbv2yrvnn0zgdmqvjlmz2vllsg6r9nlmxdgadhymhm9s51gfx65"; depends=[]; }; Achilles = derive2 { name="Achilles"; version="1.7.2"; sha256="1xkhplw7jpz7y86nac2z5vk2xs898kfv6apmk3rahjr0rmdijdqg"; depends=[data_table DatabaseConnector dplyr jsonlite lubridate ParallelLogger readr rlang SqlRender tseries]; }; AcousticNDLCodeR = derive2 { name="AcousticNDLCodeR"; version="1.0.2"; sha256="1fgzgwanpv2pzy74xdk3hamc44p8qch467wh163dxby8jr9ik0sb"; depends=[seewave tuneR zoo]; }; @@ -152,7 +159,6 @@ in with self; { AdaSampling = derive2 { name="AdaSampling"; version="1.3"; sha256="1c8dh8lxyb076317n4qk2g3qv5j4mc1dszbh3k1p2b0nxiprqk5i"; depends=[caret class e1071 MASS]; }; AdapSamp = derive2 { name="AdapSamp"; version="1.1.1"; sha256="1jayjrsiib2ij4rxxj59g71r3xhzl5yqh0lhi8k6cfy03i7dkvis"; depends=[pracma]; }; AdaptGauss = derive2 { name="AdaptGauss"; version="1.6"; sha256="04w0v2fv9ixfz148d8f5vv7w5ypdywwf1qysk2ypc7a7md4vv9qz"; depends=[DataVisualizations plotly pracma Rcpp shiny]; }; - AdaptiveSparsity = derive2 { name="AdaptiveSparsity"; version="1.6"; sha256="0imr5m8mll9j6n4icsv6z9rl5kbnwsp9wvzrg7n90nnmcxq2cz91"; depends=[MASS Matrix Rcpp RcppArmadillo]; }; AdequacyModel = derive2 { name="AdequacyModel"; version="2.0.0"; sha256="0amp6ic1wylk24sp9wpx3ci38njj7b9qjqfp89j39hkl6kc1q7sq"; depends=[]; }; AdhereR = derive2 { name="AdhereR"; version="0.8.1"; sha256="0b98yz2msg30ch3n85yzi42rlnyj5ggkz1fsysh95gd5qk4c8vg2"; depends=[data_table jpeg lubridate png rsvg webp]; }; AdhereRViz = derive2 { name="AdhereRViz"; version="0.2.1"; sha256="1jc5mfdydw9s515zi7lsmns79919vrdhh6lvh9z2bq0lrn9g1yci"; depends=[AdhereR clipr colourpicker data_table DBI highlight knitr manipulate RMariaDB RSQLite shiny shinyjs shinyWidgets V8 viridisLite]; }; @@ -163,7 +169,7 @@ in with self; { AeroSampleR = derive2 { name="AeroSampleR"; version="0.2.0"; sha256="0prdw8yjdrcyc8msk2a8ia5cjd4gm88isg8dqp9yj2aqbfz6pin7"; depends=[dplyr flextable ggplot2 ggthemes purrr stringr tidyr tidyselect]; }; AggregateR = derive2 { name="AggregateR"; version="0.1.1"; sha256="1s2q888bqx6ilisv5s4g8ryja97nz6cz4ycm4sw1i63l5wjrwljc"; depends=[data_table NCmisc tibble]; }; AgreementInterval = derive2 { name="AgreementInterval"; version="0.1.1"; sha256="1bvinzylvsaipa8mq15f45b6h37znavlrdl0rbrx1pqw52r7z8kv"; depends=[psych]; }; - AgroR = derive2 { name="AgroR"; version="1.3.5"; sha256="05b7jwah898r4g0mvyf0qlwmv5rx48pj87agf257nqz3hwmvkip5"; depends=[cowplot crayon drc dunn_test emmeans ggplot2 ggrepel gridExtra gtools knitr lme4 lmtest MASS multcomp multcompView nortest RColorBrewer]; }; + AgroR = derive2 { name="AgroR"; version="1.3.6"; sha256="0gbdba18fzk3x32wk1ycbj2ci8y1dpdmcysnmdd2361mp5yhvn7h"; depends=[cowplot crayon drc dunn_test emmeans ggplot2 ggrepel gridExtra gtools knitr lme4 lmtest MASS multcomp multcompView nortest RColorBrewer]; }; AgroReg = derive2 { name="AgroReg"; version="1.2.10"; sha256="1rvlgir48lhypw7vj23rg2xxi237sgmprp9syfryhmfz59wy6dcv"; depends=[boot broom dplyr drc egg ggplot2 minpack_lm purrr rcompanion]; }; AgroTech = derive2 { name="AgroTech"; version="1.0.2"; sha256="0pfw0sps9fbzzyy4d803j9fbg6a23nj18rks0bnrj9hms7a3vwfs"; depends=[crayon ggplot2 ggrepel gridExtra lmtest nortest readxl xlsx]; }; AhoCorasickTrie = derive2 { name="AhoCorasickTrie"; version="0.1.2"; sha256="0zh3y5jd8m0xbj6lqr01zvwj9qd1xr3iq7vd6sgr3g3qh4kqm5pq"; depends=[Rcpp]; }; @@ -179,7 +185,7 @@ in with self; { AlphaPart = derive2 { name="AlphaPart"; version="0.9.8"; sha256="1ih76v3kgnladqq3nvlqrz5sqkg1j97m778kchz6k05cjxhj8l4q"; depends=[directlabels dplyr ggplot2 magrittr pedigree Rcpp reshape tibble]; }; AlphaSimR = derive2 { name="AlphaSimR"; version="1.5.3"; sha256="1qv3bfn4xnpkiblzdig1zn3cli5g1h2binnsi4znxzd6z1406sq9"; depends=[BH R6 Rcpp RcppArmadillo Rdpack]; }; AlteredPQR = derive2 { name="AlteredPQR"; version="0.1.0"; sha256="15zszn49c2a3lad2fzfj2yblyafbrhn6j3j1dcjbcz0fxgf6cmhw"; depends=[]; }; - Amelia = derive2 { name="Amelia"; version="1.8.1"; sha256="1r27zjlr8ld932lr6dn79cravss17gry6p0mxgdlbj6g58mfc30j"; depends=[foreign Rcpp RcppArmadillo rlang]; }; + Amelia = derive2 { name="Amelia"; version="1.8.2"; sha256="0gpw6aki06ji6yszp7n9mfy8zbxvdwv1xwjlx11aj2x2ghj4mcjg"; depends=[foreign Rcpp RcppArmadillo rlang]; }; AmesHousing = derive2 { name="AmesHousing"; version="0.0.4"; sha256="080r0fkmqsdrjgwbmdzacnkmd8py611z54i6r7nzj14r295d5qhk"; depends=[dplyr magrittr]; }; AmigaFFH = derive2 { name="AmigaFFH"; version="0.4.5"; sha256="09227l3sq4bcph9x2w2qqh9zy2xrjr0makjyfx2vlp76r2xw394h"; depends=[tuneR vctrs]; }; AmmoniaConcentration = derive2 { name="AmmoniaConcentration"; version="0.1"; sha256="05pnwfji9l9az4jvni6jy7cayzg5pbspz82a63kmj6rgibn4ywvn"; depends=[]; }; @@ -194,7 +200,7 @@ in with self; { AncestryMapper = derive2 { name="AncestryMapper"; version="2.0"; sha256="1fr2y1a5rn7rq8aly94f618kywix32jwysi70nfhaqx8hf4zzprb"; depends=[svd]; }; AnchorRegression = derive2 { name="AnchorRegression"; version="0.1.3"; sha256="1bmlxk5j3i9mm71cwz785q5sysp8hsyy0080kgd3ksx78p68ara5"; depends=[glmnet mgcv selectiveInference]; }; Andromeda = derive2 { name="Andromeda"; version="0.6.6"; sha256="0k7w9jk9aw6pays5lg1spzac5kpka0i9vc2v5sxn2r4shbxr9yf9"; depends=[cli DBI dbplyr dplyr hms pillar rlang RSQLite tidyselect zip]; }; - AnglerCreelSurveySimulation = derive2 { name="AnglerCreelSurveySimulation"; version="1.0.2"; sha256="1nhd0i30g5wb5jh96gfaa0lgnbnj0m2vy4gz7v2c3142396zalnx"; depends=[dplyr ggplot2]; }; + AnglerCreelSurveySimulation = derive2 { name="AnglerCreelSurveySimulation"; version="1.0.3"; sha256="1xaksfglf45qpfqdjil8cc415ak6xnc57kxfih7qghvd3xi5c8z6"; depends=[dplyr ggplot2]; }; AnimalHabitatNetwork = derive2 { name="AnimalHabitatNetwork"; version="0.1.0"; sha256="1bhqypkiw5v9w26jbdmhndqj5hjfmf7zwivrq2hgs0zcjxwa8gfn"; depends=[ggplot2 igraph]; }; AnnoProbe = derive2 { name="AnnoProbe"; version="0.1.7"; sha256="0715bpifj8r4ji0m89wk4x7vd3pwx8kqy9vs8m0ivmq7bb56nx0b"; depends=[Biobase curl DT ggplot2 ggpubr httr pheatmap xml2]; }; AnnotationBustR = derive2 { name="AnnotationBustR"; version="1.3.0"; sha256="1q5yxzzmzvw1r64r4y0xh1fiyhaqbx5q4lzpawqaggra4w9igdl8"; depends=[ape seqinr]; }; @@ -208,7 +214,7 @@ in with self; { Aoptbdtvc = derive2 { name="Aoptbdtvc"; version="0.0.3"; sha256="19prbak6ssmzqaa88mw0h0bdsj8s6hvcsgrmlgq4h6iyp959yj73"; depends=[lpSolve MASS]; }; AovBay = derive2 { name="AovBay"; version="0.1.0"; sha256="110y9wbqr0m9b6wr1c5mncrdjpg247308989bswkqnim2msvnzcf"; depends=[BayesFactor BH broom car dplyr DT highcharter htmltools moments nortest purrr Rcpp RcppEigen RcppParallel reshape rstan rstantools shiny shinycssloaders shinydashboard shinydashboardPlus StanHeaders stringr tibble waiter]; }; ApacheLogProcessor = derive2 { name="ApacheLogProcessor"; version="0.2.3"; sha256="0h4snigh1yhp34vw52h4b6qbh9c4cvwz2cx8fwvbnw6lslmg5cgv"; depends=[doParallel foreach stringr]; }; - Apoderoides = derive2 { name="Apoderoides"; version="1.0.1"; sha256="0jh1q18qinppwn2alrm0l1jjbks0n04mdb1q64bzqa3ba3qhmlmw"; depends=[ape Rcpp RcppProgress]; }; + Apoderoides = derive2 { name="Apoderoides"; version="2.0.0"; sha256="0rgba2855gnavq4c8ik6vq0fh4m9wqyp0wgxjw7rdw1jsvi7dyqs"; depends=[ape Rcpp RcppProgress]; }; Apollonius = derive2 { name="Apollonius"; version="1.0.1"; sha256="13iz0j2kc3jzzn77jawrm0fg23mqkxh7h7dasfjibmykamvw45nb"; depends=[abind BH colorsGen gyro plotrix Polychrome Rcpp RcppCGAL RcppEigen]; }; AppliedPredictiveModeling = derive2 { name="AppliedPredictiveModeling"; version="1.1-7"; sha256="1wi0sw5w1c51rmh9z98wdpk5rgzsylkkb6g019djiwxvj92l99hh"; depends=[CORElearn ellipse lattice MASS plyr reshape2]; }; AquaBEHER = derive2 { name="AquaBEHER"; version="0.1.0"; sha256="0rgkwy1sfdkcjk69cncxd2zxlkn9kyvq8iwmz83d2gwzdzfbjqdd"; depends=[dplyr ggplot2 lubridate raster sp]; }; @@ -217,8 +223,7 @@ in with self; { ArArRedux = derive2 { name="ArArRedux"; version="1.0"; sha256="11h88gnj54cn5fbxf163s8kjqc1q452nzb218fjlwsxxwzaz5gbr"; depends=[]; }; ArCo = derive2 { name="ArCo"; version="0.3-1"; sha256="1afjdmcalx3m19jlvqs83fg5qlds59l5zzg3pzk13qk31r0hz7mk"; depends=[boot glmnet Matrix]; }; ArDec = derive2 { name="ArDec"; version="2.1-1"; sha256="17k2lnvh6vf9gy2xmyncriyjxy37ih7plvslld37kbrwh8dhybx0"; depends=[]; }; - ArchaeoChron = derive2 { name="ArchaeoChron"; version="0.1"; sha256="1qma2432mm73h72g9ah1k02wlcb6yrhc6mpai9nj7v58s126ffxn"; depends=[ArchaeoPhases Bchron coda rjags]; }; - ArchaeoPhases = derive2 { name="ArchaeoPhases"; version="1.8"; sha256="00d8lpasz96l55v3982mqg85b237lxvsjl65p288yzj87860v2kj"; depends=[coda digest dplyr ggalt ggplot2 ggraph gplots gtools hdrcde magrittr readr reshape2 shiny toOrdinal]; }; + ArchaeoPhases = derive2 { name="ArchaeoPhases"; version="2.0"; sha256="0sgsni4swnqazghdzvivacq7a67p8zbsmdpl20ayyff0pxppk966"; depends=[aion arkhe]; }; ArchaeoPhases_dataset = derive2 { name="ArchaeoPhases.dataset"; version="0.2.0"; sha256="0yffzc9jmyiil3p0bvf0fpq64mn55swcnizi3bgsl44d4j93y68q"; depends=[]; }; AriGaMyANNSVR = derive2 { name="AriGaMyANNSVR"; version="0.1.0"; sha256="1faqripvb6alfajz37zqm70p0c2f6yf9f2ca2bzrsizp0yh81719"; depends=[AllMetrics aTSA DescribeDF dplyr e1071 fGarch FinTS forecast neuralnet psych tseries]; }; Arothron = derive2 { name="Arothron"; version="2.0.5"; sha256="0clz01096fdkhnh89np3knhdnk78p2faj9zkm5qhg56jzaji8wxi"; depends=[abind alphashape3d compositions doParallel foreach geometry Morpho rgl Rvcg stringr vegan]; }; @@ -272,9 +277,10 @@ in with self; { BALLI = derive2 { name="BALLI"; version="0.2.0"; sha256="0qmjwpj56n07dvjwfknqvc02f0y5mlwh2yz4lrw7c4wqgrckcpgi"; depends=[edgeR limma MASS]; }; BAMBI = derive2 { name="BAMBI"; version="2.3.5"; sha256="16pb04n30y8sl6m6qgrdxk7sck98233cravpbzw4fzl2j8h0mm3r"; depends=[bridgesampling coda future_apply gtools label_switching lattice loo mvtnorm numDeriv qrng RColorBrewer Rcpp RcppArmadillo scales]; }; BAMMtools = derive2 { name="BAMMtools"; version="2.1.11"; sha256="0ymb1vwrzwg7gs4n3zjikg10ajk75r18j5rlgs25n4ab4fp6sibp"; depends=[ape gplots Rcpp]; }; + BANAM = derive2 { name="BANAM"; version="0.2.0"; sha256="0k04d8ssfg078w52paj323bflzlbk5k0r17c4xl1xs2g6saa0iyn"; depends=[bain BFpack extraDistr Matrix matrixcalc mvtnorm psych rARPACK sna tmvtnorm]; }; BANOVA = derive2 { name="BANOVA"; version="1.2.1"; sha256="07ghmzsb77vcd3snmg59spp60j603gawnqs847x1x44pnxs9l4wl"; depends=[coda rjags rstan runjags]; }; BAR = derive2 { name="BAR"; version="0.1.1"; sha256="0bcq6lvijq1vxri2dbhnqcn46f799h3ag974zgcdpx4c5apph04w"; depends=[]; }; - BART = derive2 { name="BART"; version="2.9.6"; sha256="03rf13mwxxzqyvaciakarrhl583f8gl81ahfakkc1578fv2fl8vf"; depends=[nlme nnet Rcpp survival]; }; + BART = derive2 { name="BART"; version="2.9.7"; sha256="15nm6ahi5kq2fd9zrksqq7ybmlzrw7hds5ws27zvlayyy2qxyq17"; depends=[nlme nnet Rcpp survival]; }; BAS = derive2 { name="BAS"; version="1.7.1"; sha256="1j76r9wl2limr7adlyr05n22q75sk8n03ar5bblpckcyrrqvpgr8"; depends=[]; }; BASS = derive2 { name="BASS"; version="1.3.1"; sha256="00py6s7b9lv8lsycpa79gbwrlbghgsffd2avggb77gxpl0g8vfz0"; depends=[hypergeo truncdist]; }; BASiNET = derive2 { name="BASiNET"; version="0.0.5"; sha256="09g2h38kz1g9kkjc69si5d6z6fkayys9hinjs3p6dn7sx7zn2bx1"; depends=[Biostrings igraph randomForest rJava rmcfs RWeka]; }; @@ -291,9 +297,8 @@ in with self; { BCBCSF = derive2 { name="BCBCSF"; version="1.0-1"; sha256="0hvhnra68i0x78n57nlbxmz0qwl2flng9w47089jw6f9hzkq9r7n"; depends=[abind]; }; BCC1997 = derive2 { name="BCC1997"; version="0.1.1"; sha256="1lqbivjkc7858jn54av1v9bzp0as43klgndbzkr59dc3l128xp12"; depends=[]; }; BCClong = derive2 { name="BCClong"; version="1.0.2"; sha256="06i77iz6i79dbwnjic7x7dgysbh4x22ixhzlpkmpb47yx7c2qmvf"; depends=[abind cluster coda ggplot2 label_switching LaplacesDemon lme4 MASS mclust MCMCpack mixAK mvtnorm nnet Rcpp RcppArmadillo Rmpfr truncdist]; }; - BCDAG = derive2 { name="BCDAG"; version="1.1.0"; sha256="0v3qxqlm5p1n0lx995xncp6793lm794i8r7nnng00w7xhynhfm43"; depends=[graph gRbase lattice mvtnorm Rgraphviz]; }; + BCDAG = derive2 { name="BCDAG"; version="1.1.1"; sha256="1w6b72vcv9gdwxm5ynpy9jrw2qpbfi4qn8272qdbv4jz1p3k605n"; depends=[graph gRbase lattice mvtnorm Rgraphviz]; }; BCDating = derive2 { name="BCDating"; version="0.9.8"; sha256="1px9fimg3fqx8bfkzq6rl34xclc9gcjxqjvj5islpdy4f1ifwph3"; depends=[]; }; - BCE = derive2 { name="BCE"; version="2.2.0"; sha256="13banjjk14rrmyd66iayywip9aznfsk8x3yk4pamlw87byf0z3vk"; depends=[FME limSolve Matrix]; }; BCEA = derive2 { name="BCEA"; version="2.4.6"; sha256="0qmnwh3j0mksgvnfnbkym7fpcngdnf1j83lqfilp5gn46akdqyvn"; depends=[cli dplyr ggplot2 gridExtra MASS Matrix MCMCvis purrr Rdpack reshape2 rlang rstan scales]; }; BCEE = derive2 { name="BCEE"; version="1.3.2"; sha256="181khl93rsrqjm8cmn14a6bb7s47dp3xc31gm9rk088ixfjadq7h"; depends=[BMA boot leaps Rcpp RcppArmadillo]; }; BCHM = derive2 { name="BCHM"; version="1.00"; sha256="1nyf65grcyf74sixixzl12gylk2rzh7n5id4mbhim4lzdm4j272i"; depends=[cluster coda crayon knitr plyr rjags]; }; @@ -309,7 +314,7 @@ in with self; { BDgraph = derive2 { name="BDgraph"; version="2.72"; sha256="1kc3icd7glivbjlhl9fbmxqza5w2x000w0w8ii8np9gjrhdwrybw"; depends=[ggplot2 igraph pROC]; }; BE = derive2 { name="BE"; version="0.2.4"; sha256="17cm4vfvrv29rfxr6v58x04y4v1ncd23cpxfpdv7lq9saq8i82ag"; depends=[rtf]; }; BEACH = derive2 { name="BEACH"; version="1.3.1"; sha256="0biq6c74k8vb8ykafzf3blyi08rp65x1vaw3bfpwdc1ihc9wrgjr"; depends=[devtools DT haven plyr rJava rtf sas7bdat shiny WriteXLS xtable]; }; - BED = derive2 { name="BED"; version="1.5.0"; sha256="07pa4ljw6qzayzjms22gi19axq6hasb9j3r8m34z3j30n9iwq2g4"; depends=[dplyr DT miniUI neo2R readr rstudioapi shiny stringr visNetwork]; }; + BED = derive2 { name="BED"; version="1.5.2"; sha256="0js227vn6mvn7zk2q0vw9w9cp2ayjzqja6mrmpw9wnx82fp0amcg"; depends=[dplyr DT miniUI neo2R readr rstudioapi shiny stringr visNetwork]; }; BEDASSLE = derive2 { name="BEDASSLE"; version="1.6.1"; sha256="1zjgcfpsvghxz62qsg4s1w6gwpd804s8hfnwy5hifg6sy4phw9d7"; depends=[emdbook MASS matrixcalc]; }; BEDMatrix = derive2 { name="BEDMatrix"; version="2.0.3"; sha256="1pq333x1shxw3wcqgcb4gqg6rwa0hyc24rib235q4zg10r2gyrbm"; depends=[crochet]; }; BEKKs = derive2 { name="BEKKs"; version="1.4.4"; sha256="1ai475d1ya8j8kl4w6qdpdmsarz74p1799fc9hl0if2r3gv211vn"; depends=[future future_apply GAS ggfortify ggplot2 gridExtra ks lubridate mathjaxr moments numDeriv pbapply Rcpp RcppArmadillo reshape2 xts]; }; @@ -320,34 +325,35 @@ in with self; { BETS = derive2 { name="BETS"; version="0.4.9"; sha256="0daixk7mqmk2jq35i7mjaslz11gxbnnjgwxfvj8x1s88vz9l74sm"; depends=[DBI digest dplyr DT dygraphs forecast foreign ggplot2 grnn htmltools httr lubridate miniUI plotly rjson rmarkdown RMySQL rstudioapi rvest seasonal shiny sqldf stringr urca webshot xml2 zoo]; }; BElikelihood = derive2 { name="BElikelihood"; version="1.1"; sha256="1v7bcyzrgaf4ih7pc0xq2zl8iwqgm5cjrz0x4ghvlai7w3008ihq"; depends=[ggplot2 mvtnorm]; }; BFF = derive2 { name="BFF"; version="3.0.1"; sha256="1sya6ww8jwi56zb3i2rjhk1qd52n5s9sqlzndyk812zyxj6h5zim"; depends=[BSDA ggplot2 gsl hypergeo Matrix]; }; + BFI = derive2 { name="BFI"; version="1.1.4"; sha256="10xy9acjvq1c21wsb3lfhpza56zcb4ifb4i4330i02phxxc8a9fa"; depends=[devtools]; }; BFS = derive2 { name="BFS"; version="0.5.8"; sha256="0s3q9v61msb5cn7pjbkppdf6bcfn6r40jjr8d289m95q1rr5wkn5"; depends=[curl dplyr fs httr2 janitor lifecycle magrittr purrr pxweb rstac rvest sf tibble tidyRSS xml2 zip]; }; BFpack = derive2 { name="BFpack"; version="1.2.3"; sha256="1bji697998qkb56gid8jd6bp9gqwxkls73d8vk55z838r60irlla"; depends=[bain Bergm ergm extraDistr lme4 MASS mvtnorm pracma QRM sandwich]; }; BGData = derive2 { name="BGData"; version="2.4.1"; sha256="1bx63spfmsn9hz3qxhkvipfvyqcdy4afqzcada3bgly265kdg10h"; depends=[BEDMatrix bigmemory bit crochet ff LinkedMatrix symDMatrix synchronicity]; }; BGFD = derive2 { name="BGFD"; version="0.1"; sha256="0983v66bjp9v3jp7zbjyffda1gaf20nakqr94c32lvh9wmk0y1s9"; depends=[AdequacyModel]; }; BGGE = derive2 { name="BGGE"; version="0.6.5"; sha256="1h76c40y45xhf2vp9g0q5j9lfwh16q9axbk5c9aqn4md008xr1j2"; depends=[]; }; BGGM = derive2 { name="BGGM"; version="2.1.1"; sha256="1k83x9x48vls5ahvl4fm3salss4vf27z23iiylkj7fcrf4br6q27"; depends=[BFpack GGally ggplot2 ggridges MASS mvnfast network Rcpp RcppArmadillo RcppDist RcppProgress Rdpack reshape sna]; }; - BGLR = derive2 { name="BGLR"; version="1.1.1"; sha256="1wv29crcq1iqrvak749vq08fjfr2ys82fkni07ipwl99hknsz5sr"; depends=[MASS truncnorm]; }; + BGLR = derive2 { name="BGLR"; version="1.1.2"; sha256="0942navssynfjl6ka7ii1khv1y7idvl5sbcy6xd911mx74vnyirr"; depends=[MASS truncnorm]; }; BGPhazard = derive2 { name="BGPhazard"; version="2.1.1"; sha256="0i2fsvb9pvvhl4xpp87cacg9934hsi060c6d1z3j5hylwyq2k5h9"; depends=[Brobdingnag dplyr ggplot2 ggthemes gridExtra magrittr progress purrr readr rlang stringr survival tibble tidyr]; }; BGVAR = derive2 { name="BGVAR"; version="2.5.5"; sha256="10cj8lx63jdzmvw674zj4vawvf3mwvyjxjpqicy9ajm6r6gbccj8"; depends=[abind bayesm coda GIGrvg knitr MASS Matrix Rcpp RcppArmadillo RcppParallel RcppProgress readxl stochvol xts zoo]; }; - BGmisc = derive2 { name="BGmisc"; version="1.2.0"; sha256="1s3y76wbwln18xdn3fcb9kj8pa038c47ghvryvcxim93f0m339fh"; depends=[igraph kinship2 Matrix]; }; + BGmisc = derive2 { name="BGmisc"; version="1.3.1"; sha256="01ka6rc5wivv4m44igfv9fm42pc1f8c6gxxwvabaz1p5hs725yx8"; depends=[data_table igraph kinship2 Matrix stringr]; }; BH = derive2 { name="BH"; version="1.84.0-0"; sha256="1b7igvvy9f13l969a26j2bdzib2laq3m4w1x0xsxjb2pbxsn1dkg"; depends=[]; }; BHAI = derive2 { name="BHAI"; version="0.99.2"; sha256="1hawa55mk590is8ziav7fdszsa3a42bqb0znzqsazz5lkg4daaa7"; depends=[MCMCpack plotrix prevtoinc]; }; BHH2 = derive2 { name="BHH2"; version="2016.05.31"; sha256="1m4fcx979nbm97hi89vbjjix0sx6qhdzs486risck9bi7yzih5k4"; depends=[]; }; - BHMSMAfMRI = derive2 { name="BHMSMAfMRI"; version="2.1"; sha256="1wcsgzx69qrw1bnipb9ry6162mirk6miw62w8pcvazqj91aljfhd"; depends=[oro_nifti Rcpp RcppArmadillo wavethresh]; }; + BHMSMAfMRI = derive2 { name="BHMSMAfMRI"; version="2.2"; sha256="0xn4ss422mkshx5kcznaym04i5z5a9vw9hvcb10r38vq031wys8q"; depends=[oro_nifti Rcpp RcppArmadillo wavethresh]; }; BHSBVAR = derive2 { name="BHSBVAR"; version="3.1.1"; sha256="184dhaajjzplslbfjmdm9zyr7h39zi1h3p549lac2sy6mrkglrc0"; depends=[Rcpp RcppArmadillo]; }; - BHTSpack = derive2 { name="BHTSpack"; version="0.6"; sha256="01y3ly83i70lkg2kgbw1r7r1g4k9rk41qyzzscbp8zgc9z63ll8z"; depends=[R2HTML xtable]; }; BI = derive2 { name="BI"; version="1.2.0"; sha256="12x8l5v703b142cixnw9fz0i1j7sx6cphjcsw7ywvhrfy7z8yc35"; depends=[]; }; BICORN = derive2 { name="BICORN"; version="0.1.0"; sha256="0mqk8vgp6jdk7f0paa06yqlibkd1y3vs69pg7i9mkvxmda7p4nkq"; depends=[]; }; BIEN = derive2 { name="BIEN"; version="1.2.6"; sha256="17zrj5ckxaz4mdbgywxi8kf51ssbf2md1d2azf30dh96kzc2ayps"; depends=[ape DBI doParallel fasterize foreach raster RPostgreSQL sf terra]; }; - BIFIEsurvey = derive2 { name="BIFIEsurvey"; version="3.5-19"; sha256="0lxjh3yg2b3z9vfil18q6sgs0090haqhwc2ympwafgskigai64n6"; depends=[miceadds Rcpp RcppArmadillo]; }; + BIFIEsurvey = derive2 { name="BIFIEsurvey"; version="3.6-6"; sha256="0g0v7sahh7kg84yi0gj7q21i2wld76vs8c0vzynyna3jal5a2ij7"; depends=[miceadds Rcpp RcppArmadillo]; }; BIGDAWG = derive2 { name="BIGDAWG"; version="3.0.3"; sha256="1zbikvhyaksbddv2kz8nqkidjy4qsfp6a8wwyxjy5a0wcnqnwsxf"; depends=[haplo_stats httr XML]; }; - BIGL = derive2 { name="BIGL"; version="1.9.0"; sha256="14igfl863v4hgzpry8a4p2hribi2slsahl1bn3amsr8cj311km64"; depends=[data_table ggplot2 lifecycle MASS minpack_lm nleqslv numDeriv plotly progress robustbase scales]; }; + BIGL = derive2 { name="BIGL"; version="1.9.1"; sha256="0cc67fg6b5vjjvq485bw374h1d0l7klcgprwpb472srsbdx6l4y2"; depends=[data_table ggplot2 lifecycle MASS minpack_lm nleqslv numDeriv plotly progress robustbase scales]; }; BINCOR = derive2 { name="BINCOR"; version="0.2.0"; sha256="0x2s82jql429shk70bhjdy9kamz8dz5ymsxj6kp8ga1711bpwyq6"; depends=[pracma]; }; BINtools = derive2 { name="BINtools"; version="0.2.0"; sha256="0x97h0b2krdgrd0x266fidj77an3dq8mf9lnbas9112p4mhkmk58"; depends=[BH combinat dplyr mvtnorm Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders stringi tibble]; }; BIOMASS = derive2 { name="BIOMASS"; version="2.1.11"; sha256="1qbx7hxzzwnwp00rdvdwqxawm54chn1pcql3009cwdydc249v0dh"; depends=[data_table jsonlite minpack_lm proj4 rappdirs sf terra]; }; BIOdry = derive2 { name="BIOdry"; version="0.9"; sha256="1j6fbrvhiaz04fpybdldjk2prg3n5ayzvxqbx0g0vbna54kd1vz6"; depends=[ecodist nlme]; }; - BISdata = derive2 { name="BISdata"; version="0.2-2"; sha256="0w7vn0x275iqsyc1l8p6c8r7v4brm8wnj7lnfb25dc9sfkz6jxx0"; depends=[]; }; + BISdata = derive2 { name="BISdata"; version="0.2-3"; sha256="1bhlnwb88diyw2f9h9gyk73m4s9s30f51imclif8rwa45dpylmd3"; depends=[]; }; BKTR = derive2 { name="BKTR"; version="0.1.1"; sha256="07qq6jxrwyvid6j54vzvf7a28ryk478kscn3z7dk9ic2y9c5ljj0"; depends=[data_table ggmap ggplot2 R6 R6P torch]; }; + BLA = derive2 { name="BLA"; version="1.0.1"; sha256="06nfsn67vgmkm0rrbs2q56gswx4hj7swysaq6vizx6zsl0xp7rvr"; depends=[data_table MASS mvtnorm numDeriv]; }; BLCOP = derive2 { name="BLCOP"; version="0.3.3"; sha256="08y9vmx3cknjvk6ngfwxlfnc03cqpj97i1ijrs1cw5sahjc0vmhc"; depends=[fBasics fMultivar fPortfolio knitr MASS quadprog rmarkdown RUnit timeSeries]; }; BLModel = derive2 { name="BLModel"; version="1.0.2"; sha256="0l5f2v5ggadmrci3qhhmxm3j9i6jii0anq5rv5vk50y2qzii2q15"; depends=[]; }; BLOQ = derive2 { name="BLOQ"; version="0.1-1"; sha256="0qs4pnzpfwkii6wpd8my34zw9k003b3is0y0aj1lhcm0qnn1p8h4"; depends=[maxLik mvtnorm]; }; @@ -360,10 +366,11 @@ in with self; { BMA = derive2 { name="BMA"; version="3.18.17"; sha256="1xfsfyjwsk5bp2j50qfhfm1yla4fl2l53d85466a9y3rl57m333d"; depends=[inline leaps robustbase rrcov survival]; }; BMAmevt = derive2 { name="BMAmevt"; version="1.0.5"; sha256="19mmrz54n8ai9sfjpb3815p4r2pzy0v18hk020vqkjxakh9zgpab"; depends=[coda]; }; BMRBr = derive2 { name="BMRBr"; version="0.2.0"; sha256="0v2ysap5jfkq9fc5blqlfhsv2bs8rqybmp5z4q3g6y3y7qzhypjw"; depends=[rvest xml2]; }; - BMRMM = derive2 { name="BMRMM"; version="1.0.0"; sha256="1h3cxj996f85pgicwl68da12fmw1knfs42dmbsrv8lr4alc2lnn0"; depends=[fields logOfGamma MCMCpack multicool pracma]; }; + BMRMM = derive2 { name="BMRMM"; version="1.0.1"; sha256="1hkk1wwxl4hn9nj43akx6d01pivg3cmkbdngip5f7g2qxd483111"; depends=[fields logOfGamma MCMCpack multicool pracma]; }; BMS = derive2 { name="BMS"; version="0.3.5"; sha256="0mivdvazhmvfg4in56hlw41amf470a20qczdi4if9r1f9kdcji19"; depends=[]; }; BMT = derive2 { name="BMT"; version="0.1.0.3"; sha256="1vdah5bsn41s2qriq15xi7dw9qzngaacmn5gk6yc7hi89dwyy3yj"; depends=[fitdistrplus partitions]; }; BMTAR = derive2 { name="BMTAR"; version="0.1.1"; sha256="0c70vkgv2sdci33yrk2n297k105wnlxj1qchskdparkiipf47xsh"; depends=[Brobdingnag doParallel expm ggplot2 ks MASS MCMCpack mvtnorm]; }; + BMconcor = derive2 { name="BMconcor"; version="2.0.0"; sha256="0sm18dy9d4byzhjymcl9i30660i7x4zd53mbgyns5ffaww4h7fcc"; depends=[]; }; BMisc = derive2 { name="BMisc"; version="1.4.6"; sha256="1j1qxa5hgc9zdmk1y4xa87jcxi8m75hms88ishfvbqg8n2k9ah1h"; depends=[data_table dplyr Rcpp RcppArmadillo]; }; BNPTSclust = derive2 { name="BNPTSclust"; version="2.0"; sha256="1ymvklv6d9684xzwdkvaxdjd1q20xmsf6kkfibn2wphlaqs2rh2n"; depends=[MASS mvtnorm]; }; BNPdensity = derive2 { name="BNPdensity"; version="2023.3.8"; sha256="0b0hv634k5vnc74iw2c0arx9rl3bh5hahhrhp14gx324jv279fs5"; depends=[coda dplyr ggplot2 gridExtra survival tidyr viridis]; }; @@ -373,10 +380,10 @@ in with self; { BNrich = derive2 { name="BNrich"; version="0.1.1"; sha256="0m3cz7npc7mwq2vj68hllbd2vf5xqw00jaxv1pm3c28mq7pb459j"; depends=[bnlearn corpcor glmnet graph]; }; BOIN = derive2 { name="BOIN"; version="2.7.2"; sha256="03h6s1nn87xgkk830wls06mgflg0arq084k74gfp1k4wccwkjr5y"; depends=[Iso]; }; BOJ = derive2 { name="BOJ"; version="0.3"; sha256="1x9lz01fjdk0aybs6zsbbq2xfjvh99qiimmnrkbcd6sj880vn3a3"; depends=[dplyr readr rvest tidyr tidyselect xml2]; }; - BOSO = derive2 { name="BOSO"; version="1.0.3"; sha256="0zax40x2d62vcn8zznmzmykk33mv4vbjfl88i3r1djbvalcdf5cf"; depends=[MASS Matrix]; }; + BOSO = derive2 { name="BOSO"; version="1.0.4"; sha256="1g7277xw9bgq575x7fhjwpja6sfbg51di7hawxhmc57kvvmpx032"; depends=[MASS Matrix]; }; BOSSreg = derive2 { name="BOSSreg"; version="0.2.0"; sha256="0ln4nx0jlvz5kqk9qkcl8a2cyhsdcqqfs5112qcaabjiwjnvla7w"; depends=[glmnet Matrix Rcpp RcppArmadillo]; }; BPM = derive2 { name="BPM"; version="1.0.0"; sha256="17k2d1xjfz85ygx0xnh6yqca9nyypd32d7sbna3k33ynsjqay3x8"; depends=[limma]; }; - BPrinStratTTE = derive2 { name="BPrinStratTTE"; version="0.0.2"; sha256="1sddfxcbk9zg266gsvb6qs6c3mw4y1d88jj6zf9781jranpb1hng"; depends=[BH dplyr furrr magrittr purrr Rcpp RcppEigen RcppParallel rstan StanHeaders stringr tibble]; }; + BPrinStratTTE = derive2 { name="BPrinStratTTE"; version="0.0.7"; sha256="1iqy36am0isiyjjgrf2jr1ywxxl0n33da637r7j3c3n3zc6yyqyg"; depends=[BH dplyr furrr magrittr purrr Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders stringr tibble]; }; BRACE = derive2 { name="BRACE"; version="0.1.0"; sha256="19paaxk0szd5azcw95sd22fryb38lamd8r4y1f6zmcngbza470dk"; depends=[survival survminer]; }; BRACoD_R = derive2 { name="BRACoD.R"; version="0.0.2.0"; sha256="1jxxrgq2s5fqflp9ac4fx51jhlx33pdwijsp4vq63y430k79vcpp"; depends=[reticulate]; }; BRBVS = derive2 { name="BRBVS"; version="0.1.1"; sha256="0ibbnfgna80xdb7lzmc0jvlkgw4xrgva1s4bnm0cq93412r2lnay"; depends=[copent ggplot2 GJRM mvtnorm]; }; @@ -402,7 +409,7 @@ in with self; { BT = derive2 { name="BT"; version="0.4"; sha256="1ifanv79rrbc9m6rxhnhhr5kss9idykpn672w3zxqi8fic9f0hsx"; depends=[rpart statmod]; }; BTLLasso = derive2 { name="BTLLasso"; version="0.1-13"; sha256="19r45qm1iq3sjb6r5ficgv8q9zwpbilxwrf6rxvqdl333xcnnjy4"; depends=[Matrix psychotools Rcpp RcppArmadillo stringr]; }; BTM = derive2 { name="BTM"; version="0.3.7"; sha256="0lal2fr2lpaky03hrc1gb15kky3s5sr9rbkmrp3v9g2iksd7b5yb"; depends=[Rcpp]; }; - BTSPAS = derive2 { name="BTSPAS"; version="2024.4.1"; sha256="0vpgbkhsirzx3c11ddw56h16kjglr76p78nwqaylinn7rx5qh68a"; depends=[actuar coda data_table ggforce ggplot2 gridExtra plyr R2jags reshape2 scales]; }; + BTSPAS = derive2 { name="BTSPAS"; version="2024.5.9"; sha256="0gc0ik2257zk6bjhwc78z53jg9a34s32wbwdqk25a6m5wvjp2qlj"; depends=[actuar coda data_table ggforce ggplot2 gridExtra plyr R2jags reshape2 scales]; }; BTSR = derive2 { name="BTSR"; version="0.1.5"; sha256="0kqgy61ijalpclrm20xwjbvbb5pkhkbgsbdbsz0mrb4v30a05dh4"; depends=[]; }; BTYD = derive2 { name="BTYD"; version="2.4.3"; sha256="1szkpcmagpig32vbs7klx71avjlmbd0cn123ljpc3i02b55lma7z"; depends=[dplyr hypergeo Matrix optimx]; }; BTYDplus = derive2 { name="BTYDplus"; version="1.2.0"; sha256="1shai7kij20g3isd6l29i696pkzymr0qq2i9gzfsxmvdb4g4pcm2"; depends=[bayesm BTYD coda data_table mvtnorm Rcpp]; }; @@ -429,8 +436,8 @@ in with self; { BatchExperiments = derive2 { name="BatchExperiments"; version="1.4.3"; sha256="0g3vr2g4v968rwzja1nngji58960p2r494km8wia7x5w3y69p063"; depends=[backports BatchJobs BBmisc checkmate data_table DBI RSQLite]; }; BatchGetSymbols = derive2 { name="BatchGetSymbols"; version="2.6.4"; sha256="1sv4p0f8l79wy3q6jwsi3iy7zljc33z9mnyf8ijb23l64w7fvy9i"; depends=[cli crayon curl dplyr furrr future lifecycle lubridate purrr quantmod rvest scales stringr tibble tidyr XML zoo]; }; BatchJobs = derive2 { name="BatchJobs"; version="1.9"; sha256="0xsw25j2ks9bqgz189qdcyj8hzz93snknlik83nj04s6vy0w7aax"; depends=[backports BBmisc brew checkmate data_table DBI digest RSQLite sendmailR stringi]; }; - BayLum = derive2 { name="BayLum"; version="0.3.1"; sha256="1n40zz0156kw6fwqvlhx3svmvwa2049z4ly9lxcid84dwyxxyn0r"; depends=[ArchaeoPhases coda hexbin KernSmooth Luminescence rjags runjags]; }; - Bayenet = derive2 { name="Bayenet"; version="0.1"; sha256="1xcn6cyzsy1am6d6kmb2fd5pn1h26hz68jj2kwy99f9bz4473rgy"; depends=[gsl hbmem MASS MCMCpack Rcpp RcppArmadillo SuppDists VGAM]; }; + BayLum = derive2 { name="BayLum"; version="0.3.2"; sha256="1vkykrwjmm810m29i2l3yps8snysc8s2qqfbgprr4a0a1qyj4nrg"; depends=[cli coda hexbin KernSmooth Luminescence rjags runjags yaml]; }; + Bayenet = derive2 { name="Bayenet"; version="0.2"; sha256="0h0b6m3lpwjax5vwbmqmfqx55hx3sgbb87jby2lwn3d2v138bpks"; depends=[gsl hbmem MASS MCMCpack Rcpp RcppArmadillo SuppDists VGAM]; }; BayesARIMAX = derive2 { name="BayesARIMAX"; version="0.1.1"; sha256="1rcfq0r8sqiqs65mbpcr8i4667cdb50k6bx6wdh9spr0djh8gfv0"; depends=[coda forecast]; }; BayesBEKK = derive2 { name="BayesBEKK"; version="0.1.1"; sha256="1vlljv7xdfvbrbxqdi91xrz1aga04aa1pb23kvnmahm2s261map1"; depends=[coda MTS mvtnorm]; }; BayesBP = derive2 { name="BayesBP"; version="1.1"; sha256="043msccrins1smaizmf7qc6q1cyjdzirw2ygnvi56lskib1cls7m"; depends=[iterators openxlsx]; }; @@ -445,10 +452,10 @@ in with self; { BayesDIP = derive2 { name="BayesDIP"; version="0.1.1"; sha256="05kz0qik76gk1v6ldhlbzmylpsv5zmbqbjgf9sc8c5zkyjdawgj8"; depends=[]; }; BayesDLMfMRI = derive2 { name="BayesDLMfMRI"; version="0.0.3"; sha256="06806wckw629gl6p8jbxpg8lh6wsy8nhs2017qcfc3wwxb6dd3jc"; depends=[abind mathjaxr neurobase oro_nifti pbapply Rcpp RcppArmadillo RcppDist Rdpack]; }; BayesDesign = derive2 { name="BayesDesign"; version="0.1.1"; sha256="1h69a18wp2z96a002x154d2vd1imzap3zm7yfssm5dh7igha18zc"; depends=[]; }; - BayesDissolution = derive2 { name="BayesDissolution"; version="0.2.0"; sha256="0wn0yibymlxjc7aqiy6x3aaylpg0izvny82cialb27iaf11kbrzl"; depends=[coda geoR MCMCpack mnormt pscl shiny]; }; + BayesDissolution = derive2 { name="BayesDissolution"; version="0.2.1"; sha256="1x3jn4mdp7csxm6h8rk33h9hlflhkjssqnfzcl3hbkwv4pb97ifl"; depends=[coda geoR MCMCpack mnormt pscl shiny]; }; BayesESS = derive2 { name="BayesESS"; version="0.1.19"; sha256="023r5pxqa2ll3vyfmchdlcg6ay0qixphz24078g1immqp43mlrxm"; depends=[dfcrm LaplacesDemon MASS MatrixModels MCMCpack Rcpp RcppArmadillo RcppEigen]; }; BayesFBHborrow = derive2 { name="BayesFBHborrow"; version="1.0.1"; sha256="1mkz9viwjf9syfgb5dnzknc96qypsjdkwijky4ybyankzg8nwwrs"; depends=[checkmate dplyr ggplot2 invgamma magrittr mvtnorm survival]; }; - BayesFM = derive2 { name="BayesFM"; version="0.1.5"; sha256="1x6paj5fr036mry6yr32vrxx2kfz89c8dz39ky1nc6jg1q7x5a8i"; depends=[checkmate coda ggplot2 gridExtra plyr]; }; + BayesFM = derive2 { name="BayesFM"; version="0.1.7"; sha256="1iiahwlzxizs6d2f59amfhhca3vh612y5n9ijzpr4fnhpm1q9df1"; depends=[checkmate coda ggplot2 gridExtra plyr]; }; BayesFactor = derive2 { name="BayesFactor"; version="0.9.12-4.7"; sha256="0z9p9vdcmcdwqmixaiqnhli2b06whbap6y4pqx4a5gcdgxlj09zr"; depends=[coda hypergeo Matrix MatrixModels mvtnorm pbapply Rcpp RcppEigen stringr]; }; BayesFluxR = derive2 { name="BayesFluxR"; version="0.1.3"; sha256="0kj7hxj39k0k6njf24ldb6w10qdwambd8hm6xpjfa1brb807lwkj"; depends=[JuliaCall]; }; BayesGOF = derive2 { name="BayesGOF"; version="5.2"; sha256="17wm0228xq3db431abyi9jr0q1q86nnajsn7hmy4dwzgvrlz5s0i"; depends=[Bolstad2 nleqslv orthopolynom VGAM]; }; @@ -460,17 +467,17 @@ in with self; { BayesLN = derive2 { name="BayesLN"; version="0.2.10"; sha256="0p8g0h4zqz5njr7lkkv2hhq9qas9lvrxamg8xb9hkqrxfxd0d3nn"; depends=[coda data_table GeneralizedHyperbolic gsl lme4 MASS Matrix optimx Rcpp RcppEigen]; }; BayesLogit = derive2 { name="BayesLogit"; version="2.1"; sha256="0w3bzk39sxdskwikcz5i0xwfsll4sqgkpr8vw8jvzlcy6dl3yhis"; depends=[]; }; BayesMFSurv = derive2 { name="BayesMFSurv"; version="0.1.0"; sha256="1yxxzwjh1fgfh7qkzf9dfm3x0vbgb0v4p6bf6b5w14kvm06rzhkg"; depends=[coda FastGP MCMCpack mvtnorm Rcpp RcppArmadillo]; }; - BayesMallows = derive2 { name="BayesMallows"; version="2.1.1"; sha256="1h232zppb7m2d6ndk18kjg9lj2s4va57j0ppfvz2k218s733skna"; depends=[ggplot2 igraph Rcpp RcppArmadillo Rdpack relations rlang sets testthat]; }; + BayesMallows = derive2 { name="BayesMallows"; version="2.2.1"; sha256="0i922b8qapm1k4wvy3f6xbf138ihgyv8l2ixsbfl73z3mrm6nyr4"; depends=[ggplot2 Rcpp RcppArmadillo Rdpack relations rlang sets testthat]; }; BayesMassBal = derive2 { name="BayesMassBal"; version="1.1.0"; sha256="1cgcx8kvn0bmn8kmq8ri3k98yx085d2qndislbwhn833ws6vkl88"; depends=[coda HDInterval LaplacesDemon Matrix pracma Rdpack tmvtnorm]; }; BayesMixSurv = derive2 { name="BayesMixSurv"; version="0.9.1"; sha256="19kf39881q00pap9afwvvggk4s4w3qpz17b7065nig1mvk8dnp8r"; depends=[survival]; }; - BayesMortalityPlus = derive2 { name="BayesMortalityPlus"; version="0.2.3"; sha256="0zh9v0hzpjsz312bpdrlc2rix2df1v8ccm831fis7czjhvcbc14z"; depends=[dplyr ggplot2 magrittr MASS mvtnorm progress scales tidyr]; }; + BayesMortalityPlus = derive2 { name="BayesMortalityPlus"; version="0.2.4"; sha256="15g87wpaj7rsm8dnz7w57vw9bpkj0aj5f6hi8v7m8kamki8m7chm"; depends=[dplyr ggplot2 magrittr MASS mvtnorm progress scales tidyr]; }; BayesMultMeta = derive2 { name="BayesMultMeta"; version="0.1.1"; sha256="09x41r5lhr2dq56b05f0aj8v4s7084d4z90qjqwdkv8zgk664ki0"; depends=[assertthat Rdpack]; }; BayesMultiMode = derive2 { name="BayesMultiMode"; version="0.7.1"; sha256="0ij1igdnbk3wy01mdimk9k5ajxmx2plla0ykvsmijzz5mcmqyrii"; depends=[assertthat bayesplot dplyr ggplot2 ggpubr gtools magrittr MCMCglmm mvtnorm posterior Rdpack sn stringr tidyr]; }; BayesNSGP = derive2 { name="BayesNSGP"; version="0.1.2"; sha256="0va4gvyfwfdk3yvhdyxc49qlmzxfblwlmwqh79b93zkv8239kkk1"; depends=[FNN Matrix nimble StatMatch]; }; BayesNetBP = derive2 { name="BayesNetBP"; version="1.6.1"; sha256="1c6a82qlcrpbb2c4zp3gk24wcgw6x62lm8hm6n2l1r307dxm2rpb"; depends=[bnlearn doBy fields graph igraph RColorBrewer]; }; BayesOrdDesign = derive2 { name="BayesOrdDesign"; version="0.1.2"; sha256="1417zd1n5sip999n6q6bgs85c0000ksl73a4p94y0lmdn27i8pmj"; depends=[coda ggplot2 gsDesign madness ordinal R2jags rjags rjmcmc schoolmath superdiag]; }; BayesPPD = derive2 { name="BayesPPD"; version="1.1.2"; sha256="0c015l8ih1ck1qb31vvnn95fivf5r3ns58pdlm4x5bf7giprjxf4"; depends=[Rcpp RcppArmadillo RcppEigen RcppNumerical]; }; - BayesPPDSurv = derive2 { name="BayesPPDSurv"; version="1.0.2"; sha256="12nazb5dd60vwp7by6an646kg7h0p1141jnk6wgv5f9lj6g45r4y"; depends=[dplyr Rcpp RcppArmadillo RcppDist tidyr]; }; + BayesPPDSurv = derive2 { name="BayesPPDSurv"; version="1.0.3"; sha256="1n954qsld509hf47hz7m0998lb1pc8mj0r8i67v0qx9qvr39jmm2"; depends=[dplyr Rcpp RcppArmadillo RcppDist tidyr]; }; BayesPieceHazSelect = derive2 { name="BayesPieceHazSelect"; version="1.1.0"; sha256="0znbmv7crqycdx75jh02h6z8d6cifjszbrldv2yva4mkjxsydag5"; depends=[mvtnorm]; }; BayesPostEst = derive2 { name="BayesPostEst"; version="0.3.2"; sha256="0r05by4w80j6hb22v3ibj686ixxbj7lkxq499fciz5lqs4lxzf3h"; depends=[brms carData caTools coda dplyr ggplot2 ggridges HDInterval MCMCpack R2jags R2WinBUGS reshape2 rjags rlang ROCR rstanarm runjags texreg tidyr]; }; BayesProject = derive2 { name="BayesProject"; version="1.0"; sha256="0b1xqw7f9kfbmr8m6fl9d2fpwr364s4a5vdw57l6i5rm6lszyfh5"; depends=[Rcpp RcppEigen Rdpack]; }; @@ -480,10 +487,11 @@ in with self; { BayesRepDesign = derive2 { name="BayesRepDesign"; version="0.42"; sha256="0xm3ap8lwg52760kyfp71i52mpkkh32753fprb4dfy1ry7g2qmyv"; depends=[lamW]; }; BayesReversePLLH = derive2 { name="BayesReversePLLH"; version="1.5"; sha256="08zx8paaqg8zkf4d2rfparbi54p1i9wr05iqp7nqy7xv3isq1zfp"; depends=[Rcpp RcppArmadillo]; }; BayesS5 = derive2 { name="BayesS5"; version="1.41"; sha256="0vs6s50h4gpxda9lbxfgn76k9kp81l62a6bv22r7ixsjlnd4baql"; depends=[abind Matrix snowfall splines2]; }; - BayesSUR = derive2 { name="BayesSUR"; version="2.1-6"; sha256="09iqd1zk9yvnbk07lkrvzb3sg54x8091862vj2vy1ran4pnaclf0"; depends=[igraph Matrix Rcpp RcppArmadillo tikzDevice xml2]; }; + BayesSUR = derive2 { name="BayesSUR"; version="2.2-0"; sha256="1v5m4m1dqvn1scg27ll4bfq656zxx26jbvgk47p83vlll9k6msn3"; depends=[igraph Matrix Rcpp RcppArmadillo tikzDevice xml2]; }; BayesSampling = derive2 { name="BayesSampling"; version="1.1.0"; sha256="1nwwf195b7hly7kjfikizyvgc975g74z6hsm89c1ibfgxlj51bcw"; depends=[MASS Matrix matrixcalc]; }; BayesSenMC = derive2 { name="BayesSenMC"; version="0.1.5"; sha256="16949bcakx4a77md1rm6364mzsjxr7gpmz2rxnslhz2szx4cnnaj"; depends=[BH dplyr ggplot2 lme4 Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; BayesSurvival = derive2 { name="BayesSurvival"; version="0.2.0"; sha256="1kpp0dfcmk86grg13b817py49v071q6p0dh8z22g6x2i8zl1vdfi"; depends=[ggplot2 survival]; }; + BayesSurvive = derive2 { name="BayesSurvive"; version="0.0.2"; sha256="1m7acw40hvjpgjzyz8fpqzvkz1dadq829klba0343g8h0hmfcd65"; depends=[GGally ggplot2 mvtnorm Rcpp RcppArmadillo riskRegression survival]; }; BayesTools = derive2 { name="BayesTools"; version="0.2.17"; sha256="1vwc64s1a10d2haw7bi5896hhipbb1y7aks4mzjpfrp4zavbzlpn"; depends=[bridgesampling coda extraDistr ggplot2 mvtnorm Rdpack rlang]; }; BayesTree = derive2 { name="BayesTree"; version="0.3-1.5"; sha256="0nq0587j9n7c83m3mw2wglz58dayfsbgrlvyfslf8jmfhgi5lqqx"; depends=[nnet]; }; BayesTreePrior = derive2 { name="BayesTreePrior"; version="1.0.1"; sha256="13igmvw1wj8kzfijzsrhdqr52kv4vqrm91i71ay6f7jnkry3spaw"; depends=[]; }; @@ -495,7 +503,7 @@ in with self; { BayesianFactorZoo = derive2 { name="BayesianFactorZoo"; version="0.0.0.2"; sha256="1w06hizaj4vxrhxv4jgr0s5ak1w0rr3j2zcdz7cf0mnrbg600dfd"; depends=[coda ggplot2 MASS Matrix matrixcalc MCMCpack mvtnorm nse Rdpack reshape2 timeSeries]; }; BayesianGLasso = derive2 { name="BayesianGLasso"; version="0.2.0"; sha256="09yb1qqx6qlsspk3ndrcqxy0956iqznw0rmyvqxgxxp3zd3y21xp"; depends=[MASS statmod]; }; BayesianLaterality = derive2 { name="BayesianLaterality"; version="0.1.2"; sha256="1dy00xgz9cc65aj39nf76crhfxfyackpcniwadrh38mk8zpbka42"; depends=[dplyr purrr Rdpack rlang tidyr tmvtnorm]; }; - BayesianMCPMod = derive2 { name="BayesianMCPMod"; version="1.0.0"; sha256="1fcdjkisxbs0z82bf28dyxj110gvv463zq7k28l2ylakpr4346wp"; depends=[checkmate DoseFinding ggplot2 nloptr RBesT]; }; + BayesianMCPMod = derive2 { name="BayesianMCPMod"; version="1.0.1"; sha256="1767rjyd5vl73lqknpxkgcv38rhxdm837zr7c3d5d6f9rdh8rgyw"; depends=[checkmate DoseFinding ggplot2 nloptr RBesT]; }; BayesianMediationA = derive2 { name="BayesianMediationA"; version="1.0.1"; sha256="1ygc0xhk7mk7pkqn0v9n23j1m75rr1r2ar30r386c1av3jh7krnw"; depends=[car gplots lattice R2jags survival]; }; BayesianNetwork = derive2 { name="BayesianNetwork"; version="0.3"; sha256="0nyv2maqssayd79fs0zhpblscd7nsvw7k4fmqzpfz2xgivnx2i5p"; depends=[bnlearn heatmaply lattice networkD3 plotly rintrojs shiny shinyAce shinydashboard shinyWidgets]; }; BayesianPlatformDesignTimeTrend = derive2 { name="BayesianPlatformDesignTimeTrend"; version="1.2.3"; sha256="1v06airw3zzkvb5qmn0abyhkdp51wjmax101ljj9ibx01nj01zdv"; depends=[BH BiocManager boot doParallel foreach ggplot2 ggpubr iterators laGP lhs matrixStats RColorBrewer Rcpp RcppEigen RcppParallel reshape rstan rstantools StanHeaders stringr]; }; @@ -510,7 +518,7 @@ in with self; { BeQut = derive2 { name="BeQut"; version="0.1.0"; sha256="065hjpz4162j2ykcwnri25j4mkqf7yl5bf9ja3xn7yvszif0pjh9"; depends=[jagsUI lqmm MASS survival]; }; BeSS = derive2 { name="BeSS"; version="2.0.4"; sha256="1y45lqw6b0qzzg9j3cs18fvzd4q7l6njhjkzpcrik2lgwkzamc8a"; depends=[glmnet Matrix Rcpp RcppEigen survival]; }; BeastJar = derive2 { name="BeastJar"; version="1.10.6"; sha256="0581q9m7lb681d12vld231vn6wqv5s2sqkvav4fd0xllvjighlx7"; depends=[rJava]; }; - BeeBDC = derive2 { name="BeeBDC"; version="1.1.0"; sha256="1ckxs41fg7gw8p9v8xink3ams0bfmjkn635dbzrvcwgmi7j3882z"; depends=[circlize CoordinateCleaner cowplot dplyr forcats ggplot2 ggspatial here igraph lubridate mgsub openxlsx paletteer readr rnaturalearth sf stringr tidyselect]; }; + BeeBDC = derive2 { name="BeeBDC"; version="1.1.1"; sha256="05c215m8zd6wcyjgvpkdmzghb2sp8677mj4shnjzqknbvmgqm9hh"; depends=[circlize CoordinateCleaner cowplot dplyr forcats ggplot2 ggspatial here igraph lubridate mgsub openxlsx paletteer readr rnaturalearth sf stringr tidyselect]; }; BeeGUTS = derive2 { name="BeeGUTS"; version="1.1.3"; sha256="1880bsgwal06i7q3la1f8alrhj43mnsim6n8inrnaqcbqgi69v3n"; depends=[BH cowplot data_table dplyr ggplot2 gridExtra magrittr odeGUTS Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tidyr]; }; Benchmarking = derive2 { name="Benchmarking"; version="0.32"; sha256="0fv0i4cpsisk5wa6hgvp75r170ir1zyr2wqbkzfz3qhr43z0jayx"; depends=[lpSolveAPI quadprog Rcpp ucminf]; }; BenfordTests = derive2 { name="BenfordTests"; version="1.2.0"; sha256="1nnj0w0zwcmg7maqmmpixx7alvsyxva370ssc26ahg6kxy5a621w"; depends=[]; }; @@ -521,17 +529,18 @@ in with self; { BetaBit = derive2 { name="BetaBit"; version="2.2"; sha256="185bsjc1azvblg0hm39bq3r1c6c4vla9k5cz39p6kjzd1gn1zhr2"; depends=[digest]; }; BetaPASS = derive2 { name="BetaPASS"; version="1.1-2"; sha256="1vx2wn2bj3xl430aw4zlv2j3m39nkmg7mfkm1pmilvpqszfx078g"; depends=[betareg ggplot2 pbapply]; }; BetterReg = derive2 { name="BetterReg"; version="0.2.0"; sha256="08qafm8j0bbh6qywyq6dr1j204n9cxrpyy2fh74mbgm3xknazxsc"; depends=[car dplyr]; }; - BeviMed = derive2 { name="BeviMed"; version="5.8"; sha256="12ngw3b05mqsf95svvkk5s8w0fs1yfbpbfk8x9a9v2yva5n65y7a"; depends=[Matrix Rcpp]; }; + BeviMed = derive2 { name="BeviMed"; version="5.10"; sha256="0brima71g7x51zd1ifbgw54mnamjmm2wr8rrcnkzdy0q8wcnvgqj"; depends=[Matrix Rcpp]; }; BeyondBenford = derive2 { name="BeyondBenford"; version="1.4"; sha256="04jdx35955g44v2is6zxfw1gip7zh3li8divc7iy5hl0jrshfhv3"; depends=[ggplot2]; }; Bhat = derive2 { name="Bhat"; version="0.9-12"; sha256="0jrn57v90anxsdasfwn3c4mxwzz8b5nbvsn5c57d71xfdza4lh6f"; depends=[MASS]; }; BiBitR = derive2 { name="BiBitR"; version="0.3.1"; sha256="0wfwph6nw12hb43j14i9ycj8m2zn0m5ynp7afq9cray8rbgvxfv6"; depends=[biclust cluster dendextend foreign lattice randomcoloR viridis]; }; BiCausality = derive2 { name="BiCausality"; version="0.1.4"; sha256="0ryzq77j8sbic5mj8r6bpirnr2vb45wwkkkkkjmv70c15ip5409r"; depends=[]; }; BiDAG = derive2 { name="BiDAG"; version="2.1.4"; sha256="0gncxn558mdasr63jvqyavd6nhg6762rk0g0a2b7hfvcivjb6bd5"; depends=[coda graph Matrix pcalg RBGL Rcpp Rgraphviz]; }; BiDimRegression = derive2 { name="BiDimRegression"; version="2.0.1"; sha256="00zcvk5v8rn3dp02sivs5z7cch9y8csp5cjhhs4ragdgcry0c3i5"; depends=[Formula]; }; - BiSEp = derive2 { name="BiSEp"; version="2.2"; sha256="1ha7rc1q54dr2xl4bpkiwl703igmmi9qphsgv2h0flq7iz0gr351"; depends=[AnnotationDbi GOSemSim mclust]; }; + BiObjClass = derive2 { name="BiObjClass"; version="0.1.0"; sha256="07vbs0qi60x32y0hj6g55z76zsfmc7v8dapr2g22lsnkfdnfh10c"; depends=[]; }; + BiSEp = derive2 { name="BiSEp"; version="2.3"; sha256="1xg2m8rvxwpj47nb20kyd5hpa1lshg58bi0alf1v476yhcwqgrhx"; depends=[AnnotationDbi GO_db GOSemSim mclust org_Hs_eg_db]; }; BiTrinA = derive2 { name="BiTrinA"; version="1.3.1"; sha256="09x3w3njdm7pgjjcqc1g3lp8nj31qkq3hmn21dqgvq7acyblan08"; depends=[diptest]; }; BiasCorrector = derive2 { name="BiasCorrector"; version="0.2.2"; sha256="0a6iiy4iw8w8s4kbjf6r0gji6izf1zdb99r8vfbvgzzwg2pxx4h4"; depends=[data_table DT magrittr rBiasCorrection shiny shinydashboard shinyjs]; }; - BiasedUrn = derive2 { name="BiasedUrn"; version="2.0.11"; sha256="0dvmkrdmhfh4swilyxf10y856kx0zf9sj1gc0g62bm6r5jhz35b2"; depends=[]; }; + BiasedUrn = derive2 { name="BiasedUrn"; version="2.0.12"; sha256="14jpijms81pgl4zyqrhwwdfj0jmlmml21blspvin8lqw8fbbbcr9"; depends=[]; }; BibPlots = derive2 { name="BibPlots"; version="0.0.8"; sha256="0zvbyh8spr0ywj64b2rc8jcq4fgn87858km4mkkh17g30ympg767"; depends=[]; }; BifactorIndicesCalculator = derive2 { name="BifactorIndicesCalculator"; version="0.2.2"; sha256="1vnwksw0j4lc2knlcmm5748pf4d7r44sn34s1mrv9p50hlnkk85p"; depends=[lavaan mirt mnormt MplusAutomation tidyr]; }; BigQuic = derive2 { name="BigQuic"; version="1.1-13"; sha256="14mz9ry72zc4c0fhc59dima66qnksr1masvhzm1j8z8r11w7qjhd"; depends=[Matrix Rcpp scalreg]; }; @@ -546,25 +555,26 @@ in with self; { Binarize = derive2 { name="Binarize"; version="1.3.1"; sha256="08xg3s30mk5q0hfvigysnfp8lsnq42j267ylpnhphw5vzlg5xivx"; depends=[diptest]; }; BinaryDosage = derive2 { name="BinaryDosage"; version="1.0.0"; sha256="10nf11c57j0ls4znm137w831s7zmihg7bybrfg666hx7c9amspjw"; depends=[digest prodlim Rcpp]; }; BinaryEMVS = derive2 { name="BinaryEMVS"; version="0.1"; sha256="1ainp6pg481yqhjc4f1pkxzxczbi3qm0kgq280vndq859ldfkpnh"; depends=[]; }; + BinaryEPPM = derive2 { name="BinaryEPPM"; version="3.0"; sha256="1sjwh423vap4gd44mkpdhsmp90y9rzr3zkzzakbfczawxz3mbcrp"; depends=[expm Formula lmtest numDeriv]; }; BinarybalancedCut = derive2 { name="BinarybalancedCut"; version="0.2"; sha256="1rs7x7ggqzaz9r2912g0fi9x7przd8gjy6pianx457w5f39fqx4v"; depends=[ggplot2 reshape2]; }; BioCircos = derive2 { name="BioCircos"; version="0.3.4"; sha256="1gl57r47p5z1wzs94xzc26j2r8z5hpqr4163b01x6jwzvbrlfwhz"; depends=[htmlwidgets jsonlite plyr RColorBrewer]; }; + BioCro = derive2 { name="BioCro"; version="3.1.3"; sha256="1r0q6rwn6qv8wh5j0qyf49dzfl1vy211wbnjkcjhg27jahf553fc"; depends=[]; }; BioInsight = derive2 { name="BioInsight"; version="0.3.1"; sha256="129w9643l01y316hm0qcsmxzh5lsdmq6xmiz4rhmdh0dcnw2s93n"; depends=[edgeR knitr limma RColorBrewer wordcloud]; }; - BioM2 = derive2 { name="BioM2"; version="1.0.5"; sha256="0qpk36ay80aqbamr08i6gggy9jlz923014dnpvnv9gbqkz6vyyw8"; depends=[caret CMplot ggforce ggnetwork ggplot2 ggpubr ggsci ggstatsplot ggthemes htmlwidgets igraph jiebaR mlr3 mlr3verse ROCR uwot viridis webshot WGCNA wordcloud2]; }; + BioM2 = derive2 { name="BioM2"; version="1.0.7"; sha256="1nr8vb5vw5r91vp700c2p4bqx99gp9xb9ch00fwad8rhv0h1yy4x"; depends=[caret CMplot ggforce ggnetwork ggplot2 ggpubr ggsci ggstatsplot ggthemes htmlwidgets igraph jiebaR mlr3 mlr3verse ROCR uwot viridis webshot WGCNA wordcloud2]; }; BioMark = derive2 { name="BioMark"; version="0.4.5"; sha256="1ifc72bayy3azbilajqqzl0is6z7l1zaadchcg3n8lhmjrv5sk3m"; depends=[glmnet MASS pls st]; }; BioPET = derive2 { name="BioPET"; version="0.2.2"; sha256="0zgq7i37d0rnjhlkcrl44x62vhz0njsv2fldm64j9r4wc02z1q9n"; depends=[ggplot2 gridExtra pROC VGAM]; }; BioPETsurv = derive2 { name="BioPETsurv"; version="0.1.0"; sha256="0svwf8pzvlmlp8aacf70hzlg2h81m6lyhh4p73ixqw5v9bnyq6m0"; depends=[ggplot2 gridExtra survival]; }; + BioPred = derive2 { name="BioPred"; version="1.0.1"; sha256="04v38zsg5n5pzg817pkz2jg8sgg1ckd909ckrapbdncyh3wsawan"; depends=[car ggplot2 mgcv onewaytests pROC PropCIs survival survminer xgboost]; }; BioProbability = derive2 { name="BioProbability"; version="1.0"; sha256="051m761zf079s0p4q0ambwqc22qjz2yajxrsmnjnxvqiaadaj1q7"; depends=[]; }; BioRssay = derive2 { name="BioRssay"; version="1.1.0"; sha256="0bs05vkidf7rfhb9s9vby7k4q9w7vwanlvk034kspqp4ydkhpm5n"; depends=[colorspace]; }; BioStatR = derive2 { name="BioStatR"; version="4.0.1"; sha256="0w8ly4pk0zv6rnmbzfq3i8sd4h4gjsxlnhj5nlyfr72687jjx5cm"; depends=[ggplot2]; }; BioVenn = derive2 { name="BioVenn"; version="1.1.3"; sha256="0nwqfb65vhr2246w17nv27v186gzl5n3jxnqx7r9rq525qvyx0rg"; depends=[biomaRt plotrix svglite]; }; - BiocManager = derive2 { name="BiocManager"; version="1.30.22"; sha256="0dg86nbh9h77ypaarsd79df24j0vnlm2df4zcmbhfasnsv0ck2ak"; depends=[]; }; - Biocomb = derive2 { name="Biocomb"; version="0.4"; sha256="0jqfac81r5731m0i9jq7v5ns9263p8r7i03jyz10y915kfr6ikh6"; depends=[arules class e1071 FSelector gtools MASS nnet pamr pROC randomForest Rcpp rgl ROCR rpart RWeka]; }; + BiocManager = derive2 { name="BiocManager"; version="1.30.23"; sha256="0k7kv06wksy3lkp37yf0kfnsbwf6fbac2vmrqip2wyy996y5vd7p"; depends=[]; }; Biodem = derive2 { name="Biodem"; version="0.5"; sha256="1phnq6zq96i6z7jj196png3spjpbbx5p2s8iya0vvbfik12ivzkc"; depends=[]; }; BiodiversityR = derive2 { name="BiodiversityR"; version="2.16-1"; sha256="059kj0cnb3fpqngww6560mqg6c4dsh5w6484v23wnmng064rf1fi"; depends=[ggplot2 Rcmdr vegan]; }; Bioi = derive2 { name="Bioi"; version="0.2.10"; sha256="1ay8889490nfhxhh72fvk9z4h58xknm2b145xhbx2wbzj65zf9ib"; depends=[assertthat dplyr igraph Rcpp]; }; - Bios2cor = derive2 { name="Bios2cor"; version="2.2.1"; sha256="0xj7ab9a463p4a67y0hlv6mfd08xf8didkn2mwrfa7gxjqqvix4z"; depends=[bigmemory bio3d circular igraph]; }; Biostatistics = derive2 { name="Biostatistics"; version="1.0.4"; sha256="1fcrj53rqg7mdhrrsl95l0n6hycb0863isch2f6zzsqdqbxhq7dh"; depends=[learnr]; }; - BiostatsUHNplus = derive2 { name="BiostatsUHNplus"; version="0.0.9"; sha256="0bgclpw0k2bdwrb785qhk490fxcb14r1cbm05zhb41mddw8zbqkk"; depends=[afex coda cowplot dplyr forcats ggh4x ggplot2 ggstance lifecycle MCMCglmm modeest openxlsx plyr purrr reportRmd rlang rstatix stringr tibble]; }; + BiostatsUHNplus = derive2 { name="BiostatsUHNplus"; version="0.0.10"; sha256="0wrppamh4m47zczci3csqfijf2hyz4lb5ks2z8h2ybn8lcnbjxgp"; depends=[afex coda cowplot dplyr forcats ggh4x ggplot2 lifecycle MCMCglmm modeest openxlsx plyr purrr reportRmd rlang rstatix stringi stringr tibble]; }; BipartiteModularityMaximization = derive2 { name="BipartiteModularityMaximization"; version="1.23.120.1"; sha256="0pz9cyg3avngxgd7ys5a1pfw4jw4cxbq36nh9hjarisl5phk761b"; depends=[Rcpp]; }; BisRNA = derive2 { name="BisRNA"; version="0.2.2"; sha256="11jl5109nlm272vncprwplkz4kpvg7yx6yfnbjg47lfrsxcj8n0g"; depends=[MASS]; }; BisqueRNA = derive2 { name="BisqueRNA"; version="1.0.5"; sha256="0p3p5lp69gri7vs6qfpm7br4ksbs4l7clm4nj8ki99wpqiqni23n"; depends=[Biobase limSolve]; }; @@ -573,15 +583,13 @@ in with self; { BivRegBLS = derive2 { name="BivRegBLS"; version="1.1.1"; sha256="1kpl0pwm2g40pxrfbz2d95vcrm51flg6bgc83661349cmc9a2511"; depends=[ellipse]; }; BivUnifBin = derive2 { name="BivUnifBin"; version="1.3.3"; sha256="0l5s07mvip1k667rvdpkh3k6xkzns8cy50bcs2xlmxd9xp7c6j2w"; depends=[BinOrdNonNor rootSolve]; }; Bivariate_Pareto = derive2 { name="Bivariate.Pareto"; version="1.0.3"; sha256="11knwynqfxdz6zl7vzr48jpygcilsxarpmwphaajh62asdlg5w6p"; depends=[compound_Cox]; }; - BlackCarbon = derive2 { name="BlackCarbon"; version="0.1.0"; sha256="19ll2lcdxj5bmgh4wyk47ddxpwrqdiy67wsvj7mi1vm7y5ccyfhn"; depends=[]; }; BlakerCI = derive2 { name="BlakerCI"; version="1.0-6"; sha256="0dcmnaf0k195caajy8h4qymyfj45cjwmkcgsbwv0z7x3h9sx5k6v"; depends=[]; }; BlandAltmanLeh = derive2 { name="BlandAltmanLeh"; version="0.3.1"; sha256="11p30zqb3f9ifk3v18dspg18sclz5zxjygy7hw8ccb4bcqhx68lm"; depends=[]; }; - Blaunet = derive2 { name="Blaunet"; version="2.2.1"; sha256="070vqkd24ydzs277acpwcqay8nrp3ip1wf2zkdkg1qc2crip86hs"; depends=[digest ergm foreign gWidgets2 gWidgets2tcltk haven network plot3D plot3Drgl rgl sna statnet_common]; }; Blendstat = derive2 { name="Blendstat"; version="1.0.4"; sha256="0nh5nq8g009vbb4mmjcrhg46yi77dk1gza4si21m58b26qf5riy5"; depends=[lattice MASS]; }; BlockCov = derive2 { name="BlockCov"; version="0.1.1"; sha256="1ilqd8kvhlq0nc1n4y7g0aiwran3kyqs8i143j6dv2wy3myn5x0l"; depends=[BBmisc dplyr magrittr Matrix Rdpack rlang tibble]; }; BlockMissingData = derive2 { name="BlockMissingData"; version="0.1.0"; sha256="12jgf58k3dgbyb7x4skcdc10m8pvyx8kzqq6fi4wn5x1g5595nxy"; depends=[doParallel foreach glmnet glmnetcr MASS Matrix pryr]; }; BlockmodelingGUI = derive2 { name="BlockmodelingGUI"; version="1.8.4"; sha256="09sbxwzvnnzjv5gy0zyd1lvm1z44ywqvanj99i15l0lp66l54572"; depends=[blockmodeling DT htmlwidgets igraph intergraph network shiny shinybusy shinyjs shinythemes visNetwork]; }; - BlythStillCasellaCI = derive2 { name="BlythStillCasellaCI"; version="1.0.0"; sha256="0xgrrh6rf732c2dh1z1qyvkqw8ga1yl6i802r399bb7k55g6z6d0"; depends=[]; }; + BlythStillCasellaCI = derive2 { name="BlythStillCasellaCI"; version="1.1.0"; sha256="1pvbnhm6y1canq67vh5c8qm6942vhglwh31w5gnrmrydyrvay7vj"; depends=[]; }; BoSSA = derive2 { name="BoSSA"; version="3.7"; sha256="0qhcar3grp6l6islbjc27jqvgh37kkdi0nql6plsqwilldv3kis6"; depends=[ape jsonlite phangorn plotrix RSQLite]; }; BoardGames = derive2 { name="BoardGames"; version="1.0.0"; sha256="1w3ghs29qlnjrd46lvv055snclwwy6a22fgdqszqm377w4favnhm"; depends=[]; }; Bodi = derive2 { name="Bodi"; version="0.1.0"; sha256="1z3xamj4qh3g5asrl3kbvcnx3r66mch34d0hlz9vg0498s9fwn6s"; depends=[gbm mgcv opera ranger rpart]; }; @@ -590,7 +598,7 @@ in with self; { BoltzMM = derive2 { name="BoltzMM"; version="0.1.4"; sha256="17nsjr2y8nniaxd6f13g85gb9rshar72qqp45yh2ygg4zrx1d226"; depends=[BH Rcpp RcppArmadillo]; }; BonEV = derive2 { name="BonEV"; version="1.0"; sha256="0lmgrg53b0abb5hidyjjmwn7lf2ani84k9fil7g6j6mdajjhh1b7"; depends=[qvalue]; }; BondValuation = derive2 { name="BondValuation"; version="0.1.1"; sha256="00fdqsy7znlwszwjm7mzd5yb3bbx463iy4fbkrzc5nn08rfa395g"; depends=[Rcpp timeDate]; }; - BoneProfileR = derive2 { name="BoneProfileR"; version="2.4"; sha256="0mm2vjg43p9abfydaw7qw0q9cwpvzxic914rpdk2dshyva6dxyx5"; depends=[HelpersMG imager knitr rmarkdown shiny]; }; + BoneProfileR = derive2 { name="BoneProfileR"; version="2.5"; sha256="0fmqzfqv08f0vpiwvl2gdix0fvk6w1jkpcv8jb9wgsq63fij0ly9"; depends=[HelpersMG imager knitr rmarkdown shiny]; }; BoolFilter = derive2 { name="BoolFilter"; version="1.0.0"; sha256="14z4fzf8p4wgi939qs6v39a3xizccjcx7j4szsydllpkvxbwggbw"; depends=[BoolNet Rlab]; }; BoolNet = derive2 { name="BoolNet"; version="2.1.9"; sha256="19xnmz5dq8lvk1va8zi931xkawkwfcfjf4vh0dsg5n8zhy4p321f"; depends=[igraph XML]; }; Boom = derive2 { name="Boom"; version="0.9.15"; sha256="00fn41sk0fdv8xv98j3wzc30vkhrw48clkqwpymvrh57rjdh4q2k"; depends=[MASS]; }; @@ -609,7 +617,7 @@ in with self; { BradleyTerry2 = derive2 { name="BradleyTerry2"; version="1.1-2"; sha256="0vss3ib74cz2zn1afmrvllawghj9z2ay4x1ysvk4rqvjmiia4a2i"; depends=[brglm gtools lme4 qvcalc]; }; BrailleR = derive2 { name="BrailleR"; version="1.0.2"; sha256="1gh4n9zl7yczmhy85xmsx1mh9qmc99xvhmm5cdnjcb644i2n214k"; depends=[devtools dplyr extrafont ggplot2 gridGraphics gridSVG hunspell knitr mathjaxr moments quarto Rdpack rmarkdown roloc rolocISCCNBS tidyr whisker XML xtable]; }; BrainCon = derive2 { name="BrainCon"; version="0.3.0"; sha256="137pagkjb4xzk3skmsf5vlp8q0k79zl9xjz8wwda1mdrknkdnbj6"; depends=[glmnet MASS]; }; - BranchGLM = derive2 { name="BranchGLM"; version="2.1.4"; sha256="0p46n5yq56pvs73xyxkkdi8pnrr555dmc1br9a4709fdpm5hf5z9"; depends=[BH Rcpp RcppArmadillo]; }; + BranchGLM = derive2 { name="BranchGLM"; version="2.1.6"; sha256="05q9w2qq7pl9zw0nxnlvmj79cb8sc9r3w4d3n355vzhf9qnzbqk4"; depends=[BH Rcpp RcppArmadillo]; }; Branching = derive2 { name="Branching"; version="0.9.7"; sha256="15znbxpv0kcl8qqihl9f5irvcsyanfhszcz0xq6r7g8gsay4s760"; depends=[]; }; BrazilMet = derive2 { name="BrazilMet"; version="0.2.0"; sha256="0pcr665j4balmcm4sq6l19nmhpbs7ayw5dljsdxr91bn6srb33b3"; depends=[dplyr readxl stringr]; }; BreakPoints = derive2 { name="BreakPoints"; version="1.2"; sha256="125fvzkmfnriyd4y4nywj5ihm766xlsyi7dpnq57fa9d38ffbyf2"; depends=[MASS zoo]; }; @@ -645,12 +653,13 @@ in with self; { CARBayesdata = derive2 { name="CARBayesdata"; version="3.0"; sha256="03m0r6n10ssljhliipvslwxgcpv0whvlj27d7awa7sp37j3aafx5"; depends=[sf]; }; CARM = derive2 { name="CARM"; version="1.1.0"; sha256="068rpz7bjc767yw4vcrf63ckyvdk2f1kskmfcc7955qf9ki5c49c"; depends=[arrangements dplyr MASS]; }; CARME = derive2 { name="CARME"; version="0.1.1"; sha256="0nam14g052swb44sw07as4agk0z47f7mc1kqlj0z9m1ywsbisnpl"; depends=[BH expm MASS Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; + CARMS = derive2 { name="CARMS"; version="1.0.1"; sha256="0w7xhvwvn5vsc0w9fn3mh750lfqh5183ads1ihv7ypdhdywb5c0p"; depends=[diagram Rcpp RcppArmadillo]; }; CARRoT = derive2 { name="CARRoT"; version="3.0.2"; sha256="1himmzsshhr2f5hljr60p7w3wq5ybdsb0f9kiga56hpppg352l3f"; depends=[doParallel foreach nnet Rdpack]; }; CARlasso = derive2 { name="CARlasso"; version="0.1.2"; sha256="05r5n5bh0fpwfigr6czh9pg29zyrw73idfvs9qm8vr3dvcmvc42r"; depends=[coda ggplot2 ggraph igraph MASS Matrix Rcpp RcppArmadillo RcppProgress]; }; CASCORE = derive2 { name="CASCORE"; version="0.1.2"; sha256="1ns20gxm7a4n2h6zdysz4p7pij5mivhdj2ssccdy36g1lihgjz8q"; depends=[pracma]; }; CASMAP = derive2 { name="CASMAP"; version="0.6.1"; sha256="1447d4gflan2093fb68inb2ysx5svb9vhnjc7lnkgpjsiam4p8yy"; depends=[Rcpp]; }; CASMI = derive2 { name="CASMI"; version="1.2.2"; sha256="1xj2d2p75hf6ypz57vbkrlcmf1gk52pv1fadyv9d40lzy8rc3667"; depends=[entropy EntropyEstimation]; }; - CAST = derive2 { name="CAST"; version="0.9.0"; sha256="046pgl83bld4590yfvj1zx09f8yp1dlc2x9n347zx6cap58dabfz"; depends=[caret data_table FNN forcats ggplot2 lattice plyr sf zoo]; }; + CAST = derive2 { name="CAST"; version="1.0.2"; sha256="1ga9j2c17gp14hgjd5wa8liak1m0qnhp27hl0r1iqk3gkxq3z5c9"; depends=[caret data_table FNN forcats ggplot2 plyr sf sp terra twosamples zoo]; }; CATT = derive2 { name="CATT"; version="2.0"; sha256="12xdspl1gbf51snyrl44nn7alfyccdfihibkgvzr66lrby8b8fhg"; depends=[]; }; CATTexact = derive2 { name="CATTexact"; version="0.1.1"; sha256="07ciln6cfvqya7dwwn6mhd9lk2833hypm4badizgfi2k749d1p00"; depends=[]; }; CAinterprTools = derive2 { name="CAinterprTools"; version="1.1.0"; sha256="07rvi91ysqyfwagmip0cnqjahv1n8slicd5hznqf5v3l841xh7p7"; depends=[ca classInt cluster FactoMineR ggplot2 ggrepel Hmisc RcmdrMisc reshape2]; }; @@ -663,7 +672,7 @@ in with self; { CBnetworkMA = derive2 { name="CBnetworkMA"; version="0.1.0"; sha256="12zg5pq029z8kw00jvb8al4igfkklacnhdchbaphhk39dg7qp4yr"; depends=[]; }; CC = derive2 { name="CC"; version="1.0"; sha256="189si37ggichqmzy8m686zw1cijix7yfy8ma5iqpnq1q9vm3pcvy"; depends=[]; }; CCA = derive2 { name="CCA"; version="1.2.2"; sha256="0r1f7m64608hq6bpw36wsw6fr4s8bj26x4062brqgn5dbpqlgczk"; depends=[fda fields]; }; - CCAMLRGIS = derive2 { name="CCAMLRGIS"; version="4.0.7"; sha256="0xv3qv0vl0xnbzfl26gjyqr4asf3j3mia2fjk30385drijxiv8wb"; depends=[bezier dplyr lwgeom magrittr sf stars terra]; }; + CCAMLRGIS = derive2 { name="CCAMLRGIS"; version="4.1.1"; sha256="0ldgmkfjw16ncrjc1jglvq63zs7iwc67b9c4wxbrw8na344mvk94"; depends=[bezier dplyr lwgeom magrittr sf stars terra]; }; CCM = derive2 { name="CCM"; version="1.2"; sha256="1mhl7yppniybdffylddbbb65n7gmv029fb46wlsxm4yf2xkplmwy"; depends=[]; }; CCMMR = derive2 { name="CCMMR"; version="0.2"; sha256="0y1lfjicyw0gs2r5nrqhkzyzkdbs6brdrzgc98k5fam79nj7kcbv"; depends=[r2r RANN Rcpp RcppEigen]; }; CCP = derive2 { name="CCP"; version="1.2"; sha256="067nf1gag3ya7v9vzcpvallga5dr243q0q07fd370k0zynmhcfby"; depends=[]; }; @@ -671,12 +680,14 @@ in with self; { CCWeights = derive2 { name="CCWeights"; version="0.1.6"; sha256="0in3pl1n48jal6f7kiyw60by11vbga8vr45x0wywghd7dz60ppfv"; depends=[bs4Dash dplyr DT fresh magrittr plotly readr readxl rmarkdown shiny]; }; CDCPLACES = derive2 { name="CDCPLACES"; version="1.1.5"; sha256="0q785ryilzqab730vg1ba2q738xxrasyzdq3ckc69dsxjp0cpn3s"; depends=[curl dplyr httr httr2 jsonlite sf tidyr tigris usa]; }; CDFt = derive2 { name="CDFt"; version="1.2"; sha256="19axaf3bh9gasnsfamd5ych1jn751scaplgwpmsf3liazcqqpa61"; depends=[]; }; + CDGHMM = derive2 { name="CDGHMM"; version="0.1.0"; sha256="18gf8p5h006h125dfygghxbkdbg26p77k632l2plhrpcgd3iszbw"; depends=[cluster MASS mvtnorm ramify]; }; CDM = derive2 { name="CDM"; version="8.2-6"; sha256="1lcq3i5rlyqkc12c26kj0x4fm2gh1jsisp6kbf59y3hjdkiqajhl"; depends=[mvtnorm polycor Rcpp RcppArmadillo]; }; - CDMConnector = derive2 { name="CDMConnector"; version="1.3.0"; sha256="09vdcj7nqyqavyhm8sa1ncn8zjyk320jq278m1ca3hqyap0p5v21"; depends=[checkmate cli DBI dbplyr dplyr fs generics glue jsonlite lifecycle omopgenerics purrr readr rlang stringi stringr tidyr tidyselect waldo withr]; }; - CDSE = derive2 { name="CDSE"; version="0.1.0"; sha256="0pysz1vcmi051qhdmmyp4ynnhpb4lj7qbjb80k16z9xnmd5h58bk"; depends=[geojsonsf httr2 jsonlite lubridate lutz sf terra]; }; + CDMConnector = derive2 { name="CDMConnector"; version="1.4.0"; sha256="1b129mm7qpfl57bf2spcr6wkq3ha2mxmacx17lnaln47a0n2nm5y"; depends=[checkmate cli DBI dbplyr dplyr fs generics glue jsonlite lifecycle omopgenerics purrr readr rlang stringi stringr tidyr tidyselect waldo withr]; }; + CDSE = derive2 { name="CDSE"; version="0.2.0"; sha256="1ygjmx1snfcj0h7p733v3n2lrzwxr2iqlqrx44dxsz9iaffx5xzk"; depends=[geojsonsf httr2 jsonlite lubridate lutz sf terra]; }; CDSS = derive2 { name="CDSS"; version="0.2-0"; sha256="13p5vg07lv1vbwpsd33x4mc8pvwf6s6yqikrbyakrfsjlznzw5gj"; depends=[openxlsx readODS]; }; + CDVI = derive2 { name="CDVI"; version="0.1.0"; sha256="1q8f1smj07jnzgp7p2yfviz6wvrlvi5dx7sh4x09yzqfca5v8g46"; depends=[]; }; CDVineCopulaConditional = derive2 { name="CDVineCopulaConditional"; version="0.1.1"; sha256="1wyy324vrwipdsq0p021bj1gdhyxg09g3dkw8wv5v6rfrrs84m9k"; depends=[combinat VineCopula]; }; - CDatanet = derive2 { name="CDatanet"; version="2.1.3"; sha256="0q2g7qcqdlfqsi2fynz6r5qlnrqc0q8ndhja540lqd1l0vyafgmh"; depends=[ddpcr Formula formula_tools Matrix matrixcalc Rcpp RcppArmadillo RcppDist RcppEigen RcppNumerical RcppProgress]; }; + CDatanet = derive2 { name="CDatanet"; version="2.2.0"; sha256="1qzfxz72zpxi48djqhypqlmajk6rx91m0i997vsr0zry0dp2zrzb"; depends=[ddpcr doParallel doRNG foreach Formula formula_tools Matrix matrixcalc Rcpp RcppArmadillo RcppDist RcppEigen RcppNumerical RcppProgress]; }; CEC = derive2 { name="CEC"; version="0.11.1"; sha256="02jk68lxx1gszpi7awi6c1qvc4bsjz8bjxq4rdka9fxj7ql27raf"; depends=[]; }; CEDA = derive2 { name="CEDA"; version="1.1.1"; sha256="1bpqlqak48crqsz3sg6qcli1f3vhn38p421wcigfvd5f1hm3gdvg"; depends=[dplyr ggplot2 ggprism ggridges ggsci limma mixtools]; }; CEEMDANML = derive2 { name="CEEMDANML"; version="0.1.0"; sha256="0hc5sx1zvxj3j5psgcgzhw6l9zrvbbsnpw6qr7ww82bjjr3wbi3c"; depends=[aTSA caret e1071 earth fGarch FinTS forecast LSTS neuralnet pso Rlibeemd tseries]; }; @@ -687,15 +698,16 @@ in with self; { CFAcoop = derive2 { name="CFAcoop"; version="1.0.0"; sha256="1qnqbqh3p8grp6mxhqrwfm1nf1sxhqa6pjxkpf7vk9nx40g815gn"; depends=[Hmisc]; }; CFC = derive2 { name="CFC"; version="1.2.0"; sha256="16abn3ydixb819qyyrs351d8v6qaaaz1gif0yfd8gdh7xnr2qzpy"; depends=[abind doParallel foreach Rcpp RcppArmadillo RcppProgress survival]; }; CFF = derive2 { name="CFF"; version="1.0"; sha256="04z3q0s4b1yns5l7lplw8qrcdjzsdy9crnhakyzd6r449hjfsvnz"; depends=[]; }; - CFO = derive2 { name="CFO"; version="1.1.0"; sha256="1pfgkk3ngxg7fjnp7hhv7j42x27jnddll3385nxqhwfki6iwdqzq"; depends=[dplyr ggplot2 Iso survival]; }; + CFO = derive2 { name="CFO"; version="1.2.1"; sha256="17qjjcyhfn2n9fkbc4dciscr35dnnvv15csh7yw738kzfvybvrvp"; depends=[dplyr ggplot2 Iso survival]; }; CFilt = derive2 { name="CFilt"; version="0.2.1"; sha256="1iah41s0pd8s4vmg7r6npsgmfr6mvyp5wfnyimx51fqr2f3narwf"; depends=[]; }; - CFtime = derive2 { name="CFtime"; version="1.3.0"; sha256="06h7pmabwh7lc7hcp0lb6kb3qg7pj50yi5a8gpnndm00aba3xgqi"; depends=[]; }; + CFtime = derive2 { name="CFtime"; version="1.4.0"; sha256="0sl7rccd2kgfv8y46x0mpg1m28y2lgn1mjar8shrg68m9lszwzj5"; depends=[]; }; CGE = derive2 { name="CGE"; version="0.3.3"; sha256="0q1fv62159cx9z25488fxf6a6fi1m59hdh60ldypsjwil77q0s3i"; depends=[]; }; CGGP = derive2 { name="CGGP"; version="1.0.4"; sha256="01jnq0bxacz5vlacmizanc54ms0fdbs9whapqlzdw4jrjlxnwnxa"; depends=[Rcpp RcppArmadillo]; }; CGManalyzer = derive2 { name="CGManalyzer"; version="1.3.1"; sha256="1hg8svdqq0xgdxvry5agwvz2jlx6d0vazny9kdxwxlg4wnydai2f"; depends=[]; }; - CGNM = derive2 { name="CGNM"; version="0.6.7"; sha256="0xr3c0806pvsv2ywcm8c5b9h96xs2sdclrifffg6vfillzrn2pqy"; depends=[ggplot2 MASS]; }; + CGNM = derive2 { name="CGNM"; version="0.9.0"; sha256="1m2cqwb8q2lirf09d5pmqjan4r1w8m9pkg2wzyr8jp7sg1dqaaw7"; depends=[ggplot2 MASS shiny]; }; CGP = derive2 { name="CGP"; version="2.1-1"; sha256="05a6gydlb99yk2jpy2hyg4c30hqyp8dg2i9dmbjc1n5cmgpg3im9"; depends=[]; }; CGPfunctions = derive2 { name="CGPfunctions"; version="0.6.3"; sha256="12l3ww9wfrk8i0a63wv5h4ayqj6fj5fz5yvkiskvaaida32vds2m"; depends=[BayesFactor DescTools dplyr forcats ggmosaic ggplot2 ggrepel paletteer partykit purrr rlang scales sjstats stringr tidyr]; }; + CGR = derive2 { name="CGR"; version="0.1.0"; sha256="03kgbhxjcsid5s61kq4zc4612ammd17k1w4m8f2p1xq2ib1mykqd"; depends=[]; }; CHEMIST = derive2 { name="CHEMIST"; version="0.1.5"; sha256="00alby5x01a2izmzk0ilkx5jgkwavsaj18w3kra444pib0ncrl92"; depends=[LaplacesDemon MASS XICOR]; }; CHFF = derive2 { name="CHFF"; version="0.1.0"; sha256="0jv75p1bnwsad2vpxf1zwq97al9xxhk2hpnpsilf0jn0w7g9b2d3"; depends=[]; }; CHMM = derive2 { name="CHMM"; version="0.1.1"; sha256="07fdvnwhblwvljbl2z0vs42nwki67yl5ly3fj40p50k3rnqqmavj"; depends=[mclust]; }; @@ -716,7 +728,8 @@ in with self; { CIPerm = derive2 { name="CIPerm"; version="0.2.3"; sha256="1arb9jswnjmw8fgabwn3ap5wi57rwgh6dnq9c19v1qbcx8lhzs7c"; depends=[matrixStats]; }; CIS_DGLM = derive2 { name="CIS.DGLM"; version="0.1.0"; sha256="0c7jxfb8gaklf6p83152wb2nszm2p806p3n523xajf4ha368d3kq"; depends=[dglm dplyr ggplot2 RColorBrewer]; }; CITAN = derive2 { name="CITAN"; version="2022.1.1"; sha256="09m9f6s9y7ygbixcymg93vsrqz5jsjp968cjhxnj1v73hzalk168"; depends=[agop DBI RSQLite stringi]; }; - CIfinder = derive2 { name="CIfinder"; version="1.0.2"; sha256="0if3jsg5gr3dxz0ggg0zhk682h3c7hqv76xc4shgknh8vqc2njv8"; depends=[kableExtra ratesci Rdpack]; }; + CITMIC = derive2 { name="CITMIC"; version="0.1.0"; sha256="1dr8i1hpc5hq8jbv59frh8yxa8nykkwfi4hpa9rmlycqwwy9xp16"; depends=[fastmatch igraph]; }; + CIfinder = derive2 { name="CIfinder"; version="2.0.0"; sha256="1kgcf82ixv2pic31msxzzaapnas88skk033pifa0sip8pya1by4q"; depends=[boot kableExtra ratesci Rdpack]; }; CIplot = derive2 { name="CIplot"; version="1.0"; sha256="0hx3dn7d8hvsh75747d9046iqriy3bjnchph8xllnvlhkrm4di1f"; depends=[MASS multcomp]; }; CJAMP = derive2 { name="CJAMP"; version="0.1.1"; sha256="0caznbqy5hsp7h0gkdbv966vfpq8z1khvbizi4vpc9mxck1nqc99"; depends=[optimx]; }; CJIVE = derive2 { name="CJIVE"; version="0.1.0"; sha256="1937q125w39rsl2i5imqlk25r7mr1hvpmjy2br0xq98vdkxazqsq"; depends=[fields ggplot2 gplots psych reshape2 rootSolve]; }; @@ -748,9 +761,9 @@ in with self; { CNVRG = derive2 { name="CNVRG"; version="1.0.0"; sha256="0xr2c5yc9g8hqw5dy5k2y0pm54sdrrbafsc3cpafpwaf803vdrbk"; depends=[BH Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tibble vegan]; }; CNVScope = derive2 { name="CNVScope"; version="3.7.2"; sha256="03jkivg9jr2dpkf739cba3dsjf56gwvcpq3nqhp42kmmgn50rpiq"; depends=[biomaRt data_table doParallel dplyr foreach GenomicInteractions ggplot2 Hmisc jointseg magrittr Matrix matrixStats OpenImageR plyr RCurl reshape2 rtracklayer shiny stringr tidyr]; }; CNprep = derive2 { name="CNprep"; version="2.2"; sha256="1vfy86b5cczw0va2fkbjv9c99q1gz3sx76yra76x8sz94nhxxq4m"; depends=[mclust rlecuyer]; }; - COAP = derive2 { name="COAP"; version="1.1"; sha256="0zk8y8nnn33wby70hsc3qn1z58rh1bmwhc3a5md9xf1ivirqlxmg"; depends=[irlba MASS Rcpp RcppArmadillo]; }; + COAP = derive2 { name="COAP"; version="1.2"; sha256="1772aiy9ywvgb1k9qn41l00qhsmhxkx53mdl16ggcwq0c3gdm8ly"; depends=[irlba MASS Rcpp RcppArmadillo]; }; COCONUT = derive2 { name="COCONUT"; version="1.0.2"; sha256="1qjrhxn6dkxyimdca3nslaiw3hncfpk1pk4v01mcrnz550z001nz"; depends=[]; }; - COINr = derive2 { name="COINr"; version="1.1.7"; sha256="0yvaqm2f4ny0afqyis0fna2h3cngwpb7xaw9kpr9nsbfdigj3d47"; depends=[ggplot2 openxlsx readxl rlang]; }; + COINr = derive2 { name="COINr"; version="1.1.14"; sha256="1fk2ha2g02f720kxxbxf2fkg2xyg81y3p181zy0yj8f4mjxp0w1s"; depends=[ggplot2 openxlsx readxl rlang]; }; COLP = derive2 { name="COLP"; version="1.0.0"; sha256="0259s058rn7fyprma5frx7sdjv4qk9hxijpi9xh7qyz5jzzsi660"; depends=[combinat MASS]; }; COMBAT = derive2 { name="COMBAT"; version="0.0.4"; sha256="0m700pl33frdpc9y16y4zyh1ixpardh0r5kmz8a78jrh1acn30id"; depends=[corpcor mvtnorm]; }; COMBO = derive2 { name="COMBO"; version="1.0.0"; sha256="12k5lchxdxql3q7si05404f8dc26xjxqf95mq5jykgp9chgl6i5w"; depends=[dplyr Matrix rjags SAMBA tidyr turboEM]; }; @@ -767,7 +780,7 @@ in with self; { CP = derive2 { name="CP"; version="1.8"; sha256="1ydpkk3zqz3r2szny68wqa4hz5iczq1q0hkkcbw7na8sg68sgriq"; depends=[survival]; }; CPAT = derive2 { name="CPAT"; version="0.1.0"; sha256="0zygncwww3cazwmx06bhzq0g41xcqfpw307azdhygc8jmcy6qj71"; depends=[purrr Rcpp RcppArmadillo Rdpack]; }; CPBayes = derive2 { name="CPBayes"; version="1.1.0"; sha256="1kw0r8spqm0s7cb3w5gplw67mhfmcbbf3ligngbary77ghkzirnb"; depends=[forestplot MASS mvtnorm purrr]; }; - CPC = derive2 { name="CPC"; version="2.5.6"; sha256="1la2z3vh1imq3drfd9knp19c9rjin4g0zkw9lriz27i0z86dx275"; depends=[cluster dbscan Rfast]; }; + CPC = derive2 { name="CPC"; version="2.6.0"; sha256="0n1vsn7b1rllbsad2bshhi0c6pz7zqz6bmcc176qh50hm4hgp99r"; depends=[cluster dbscan Rfast]; }; CPE = derive2 { name="CPE"; version="1.6.3"; sha256="1m62g6psfhzk6ravqiydg4ix422j1sgcx92qpg9fpz6xm6aa17vc"; depends=[rms survival]; }; CPGLIB = derive2 { name="CPGLIB"; version="1.1.1"; sha256="10pv9f36cg4ahgcbl3agc6zvgh3bmv78rc2vl6xhm1jpijhxqk93"; depends=[Rcpp RcppArmadillo]; }; CPMCGLM = derive2 { name="CPMCGLM"; version="1.2"; sha256="07hx2ik5zg05w1h6i94398mp54q958phws9ydgp6syjqlp9dpf1p"; depends=[abind mvtnorm plyr]; }; @@ -777,7 +790,7 @@ in with self; { CR2 = derive2 { name="CR2"; version="0.2.1"; sha256="1j9wkpfr6bk07sj1swcjih12qz0cin811k69ihizsi4190m5f49k"; depends=[broom dplyr generics lme4 magrittr Matrix nlme performance tibble]; }; CRABS = derive2 { name="CRABS"; version="1.2.0"; sha256="062nxmidji9qcp1v5hdh1806r99hkxqq5d9cay7xwby0h5qzl75x"; depends=[ape colorspace deSolve dplyr ggplot2 latex2exp magrittr patchwork pracma tibble tidyr]; }; CRANsearcher = derive2 { name="CRANsearcher"; version="1.0.0"; sha256="09gw1s28gb0l2cn4w3asl6zlr7wfacxwafbdrayajwckyfkjl5dl"; depends=[curl dplyr DT lubridate miniUI shiny shinyjs stringr]; }; - CRE = derive2 { name="CRE"; version="0.2.5"; sha256="124l2pf10gnfm4bhjaqwaj5j0w3fkl56nszpr4skwvkj3f3haggc"; depends=[bartCause data_table gbm ggplot2 glmnet inTrees logger magrittr MASS randomForest RRF stabs stringr SuperLearner xgboost xtable]; }; + CRE = derive2 { name="CRE"; version="0.2.6"; sha256="19clbz7x4sf8jxj0s77ym9k1k5hgd64myvvn5f3m6pxpnx7hskhl"; depends=[arules bartCause data_table gbm ggplot2 glmnet logger magrittr MASS randomForest RRF stabs stringr SuperLearner xgboost xtable]; }; CREAM = derive2 { name="CREAM"; version="1.1.1"; sha256="1lccpwn6c5pmykgf689gvvpqdcilkys4vclpxjhllhanjrfhcs3q"; depends=[]; }; CREDS = derive2 { name="CREDS"; version="0.1.0"; sha256="1llgxsmpk13gq75y2r3qiwwjcl87bknkryaw5dq0ndf17rj31mw8"; depends=[MASS]; }; CRF = derive2 { name="CRF"; version="0.4-3"; sha256="0jlcc1ffd2z7sz1szbi4vrp5rihmcp18bsw27x02ivi6l21nyivf"; depends=[Matrix]; }; @@ -795,7 +808,6 @@ in with self; { CSHShydRology = derive2 { name="CSHShydRology"; version="1.4.0"; sha256="06hdqdzvfpfn4r6x1d2m24lz2w5sj20fr7d791zqzd16mp767qcc"; depends=[circular dplyr fields ggplot2 ggspatial httr Kendall lubridate magrittr OpenStreetMap plotrix raster rnaturalearth sf stringr tidyhydat timeDate whitebox]; }; CSIndicators = derive2 { name="CSIndicators"; version="1.1.1"; sha256="062v23vm2yz0dr2s0d6p7iwccdkgywn8k9gfp4jc8kr56ff3hvvr"; depends=[ClimProjDiags CSTools lmom lmomco multiApply s2dv SPEI zoo]; }; CSMES = derive2 { name="CSMES"; version="1.0.1"; sha256="1p8wsl9h1f44a7kkj660h1k1v26pp6q1h13rw9l6pikniwdks84c"; depends=[caTools data_table mco ROCR rpart zoo]; }; - CSTE = derive2 { name="CSTE"; version="2.0.0"; sha256="0r38pvd83aw9zrq43malw50vlbnknh3b53x3ydj0wxrk95wsmy46"; depends=[dfoptim fda locpol Rcpp survival]; }; CSTools = derive2 { name="CSTools"; version="5.2.0"; sha256="0yyzc76x45pf3r84jdpxj2zplibf6zb1q3gb8jv5ncpcw3s9i3c9"; depends=[abind ClimProjDiags data_table easyNCDF easyVerification ggplot2 lubridate maps multiApply ncdf4 plyr qmap rainfarmr RColorBrewer reshape2 s2dv scales startR verification]; }; CSclone = derive2 { name="CSclone"; version="1.0"; sha256="0lqsqsgh2sf44fr1r7g179556v294yr1wy7x4320g7adxshrwyh5"; depends=[DNAcopy lpSolve mcclust moments]; }; CSeqpat = derive2 { name="CSeqpat"; version="0.1.2"; sha256="1nqk873cagpn4fba4rmyzb6hni1p5lqcvsr9givrcm0gfx756w1h"; depends=[NLP tm]; }; @@ -813,17 +825,18 @@ in with self; { CUMP = derive2 { name="CUMP"; version="2.0"; sha256="0rdscywmi4sylpjpr8r472iapddizb1mqyrd532cvw6frxins7w0"; depends=[]; }; CUSUMdesign = derive2 { name="CUSUMdesign"; version="1.1.5"; sha256="1qxq1a8b5pnmlq6rpjzvcp32scn2qknafch3h7qjsy8499zzbxx8"; depends=[]; }; CVD = derive2 { name="CVD"; version="1.0.2"; sha256="0agb0liwbp4wvmxbyxgfb7471ki1agfb6ssh77kvwbkxqmrc8d96"; depends=[]; }; - CVEK = derive2 { name="CVEK"; version="0.1-2"; sha256="03z4s0szi8rl3izc651rvrhl2z247aaflyphzizplgmpw81xv1ry"; depends=[limSolve MASS]; }; CVR = derive2 { name="CVR"; version="0.1.1"; sha256="1y8m9r409jq5h6xx1rvz7c7aj882jldfxly89zf3cvp2qg3jh7rj"; depends=[PMA Rcpp RcppArmadillo]; }; CVST = derive2 { name="CVST"; version="0.2-3"; sha256="0bgk0d6w3dyhb5s30idnp6jpb3m8wf3b79wqlg127wwm0cird8pg"; depends=[kernlab Matrix]; }; CVThresh = derive2 { name="CVThresh"; version="1.1.2"; sha256="14fgm5kzp1sscklv2pra800p12ga2hlqmm8s6zs5hdhlyvf0kj6v"; depends=[EbayesThresh wavethresh]; }; - CVXR = derive2 { name="CVXR"; version="1.0-12"; sha256="1igzi231rkqi7pc5ak8b29a8x7fry0yqs8vg2m4i5ab9jdm8fsp7"; depends=[bit64 ECOSolveR gmp Matrix osqp R6 Rcpp RcppEigen Rmpfr scs]; }; + CVXR = derive2 { name="CVXR"; version="1.0-13"; sha256="0nl7hc7scc6grn7c3mbnn0r65pd2yd27gvs0d2xh8ban19smr2c1"; depends=[bit64 ECOSolveR gmp Matrix osqp R6 Rcpp RcppEigen Rmpfr scs]; }; CVglasso = derive2 { name="CVglasso"; version="1.0"; sha256="1bh09cd0yabhqv5yfahhvayx3f09yqapzl1yr9nc9xqwyx1d0cfd"; depends=[doParallel dplyr foreach ggplot2 glasso]; }; CVrisk = derive2 { name="CVrisk"; version="1.1.1"; sha256="1krqg3w2yqbpisivyym98p6yvhw1dw6qga8xm1sqxdd75g982fhq"; depends=[]; }; + CWT = derive2 { name="CWT"; version="0.1.1"; sha256="1afa94694fyqm947ncp96sxf7wyn095a66hyw8xharb30jf1b6q7"; depends=[data_table Rcpp RcppArmadillo]; }; CaDENCE = derive2 { name="CaDENCE"; version="1.2.5"; sha256="1z3p5y1l67r470x6wrhnyjvw1ndppcm08fpj99x122j7kn6byff2"; depends=[pso]; }; CaPO4Sim = derive2 { name="CaPO4Sim"; version="0.2.0"; sha256="0s4mqlas41ll656hj1imzqydgwgw002d469z01fjdcs4d6daljw6"; depends=[DT htmltools magrittr plotly purrr rintrojs shiny shinycssloaders shinydashboard shinydashboardPlus shinyjqui shinyjs shinyWidgets visNetwork]; }; Cairo = derive2 { name="Cairo"; version="1.6-2"; sha256="0qjdsj6mpbwvnp8cimc4yrqfq3z68pfcd78ahsai52hpjdplqvvb"; depends=[]; }; CalSim = derive2 { name="CalSim"; version="0.5.2"; sha256="1ij3xaizq1lpq5vg25i8pz4khm7ab81kzfayp6a914n0jgxvprj7"; depends=[ExactMultinom spatstat spatstat_geom]; }; + CalcThemAll_PRM = derive2 { name="CalcThemAll.PRM"; version="1.1.1"; sha256="1jm2b4sy1vhzsr2hhl219h65yzx30n7pl0h3w1v3fmfd0hamd1s8"; depends=[dplyr DT lubridate magrittr MASS plotly VGAM zoo]; }; Calculator_LR_FNs = derive2 { name="Calculator.LR.FNs"; version="1.3"; sha256="03qg9rnz623dwnp68xhhsh9788s49n6xp0migg1nnjaqhrahlgdd"; depends=[]; }; CalibratR = derive2 { name="CalibratR"; version="0.1.2"; sha256="1hnmhijckxd35h8mhpzqpglk1ykdih2c5kg17myc7cci5xjk9nfr"; depends=[doParallel fitdistrplus foreach ggplot2 pROC reshape2]; }; CalibrateSSB = derive2 { name="CalibrateSSB"; version="1.3.0"; sha256="0qwqvyrpprxc5v0ng6qjp9gmdf0n0iiv46z14d8h303xpi84g42x"; depends=[survey]; }; @@ -844,29 +857,27 @@ in with self; { CatEncoders = derive2 { name="CatEncoders"; version="0.1.1"; sha256="1q9wzq06lac8z9y8b65alsxpb48bw8wqmifd893kknk51xq6r9kl"; depends=[data_table Matrix]; }; CatPredi = derive2 { name="CatPredi"; version="1.3"; sha256="0wj37pav20s273ha8pwmzypcdl8frakrxn5k149lg6vkgl6qmj8x"; depends=[mgcv rgenoud rms survival]; }; CatReg = derive2 { name="CatReg"; version="2.0.3"; sha256="02pxarc4v45w8ncx8hq084m69qgl9s2lkrv1biz60vrvl99dg016"; depends=[Rcpp Rdpack]; }; - CatastRo = derive2 { name="CatastRo"; version="0.3.0"; sha256="1rdpgp1rav82ksfikc57zf7wqa8zd4gzxmnmrlg2jjiv404wwm42"; depends=[dplyr httr mapSpain rappdirs sf stringi terra tibble xml2]; }; + CatastRo = derive2 { name="CatastRo"; version="0.4.0"; sha256="0v2gb6hvvh5zv5w3gvk07mnya2y2gra271if8nqi1khb7l52l516"; depends=[dplyr httr2 mapSpain rappdirs sf stringi terra tibble xml2]; }; CauchyCP = derive2 { name="CauchyCP"; version="0.1.1"; sha256="0sv1gfvgwqvm7zb3rhlhmfgfwm2i49wzzkg473gdmamvvpvzih43"; depends=[survival]; }; CausCor = derive2 { name="CausCor"; version="0.1.3"; sha256="0hqzzy6wmxws90q4p7d2k0781zmkqq344l352zj9lcqh23ci4p8i"; depends=[cowplot dplyr ggplot2 magrittr WriteXLS]; }; CausalGAM = derive2 { name="CausalGAM"; version="0.1-4"; sha256="1riz11hfg96iks7734rg692l75nfrd3hmr9gw563j27rkk1nfkl6"; depends=[gam]; }; - CausalGPS = derive2 { name="CausalGPS"; version="0.4.1"; sha256="0qawlwd5a6xryw0688wx04s55gahchxb3xxs0jpiqqrm9rp3y687"; depends=[cowplot data_table Ecume gam ggplot2 gnm KernSmooth locpol logger MASS polycor Rcpp rlang SuperLearner wCorr xgboost]; }; + CausalGPS = derive2 { name="CausalGPS"; version="0.4.2"; sha256="146nszscdlm59ba7j90bbhj689x2hba7w2ywr2kpd5x5bhw8jagp"; depends=[cowplot data_table Ecume gam ggplot2 gnm KernSmooth locpol logger MASS polycor Rcpp rlang SuperLearner wCorr xgboost]; }; CausalImpact = derive2 { name="CausalImpact"; version="1.3.0"; sha256="0h3sh35962vdph72svfdvk6b1gl7wnj2kfkkpcjldbiszlfxp7wx"; depends=[assertthat Boom bsts ggplot2 zoo]; }; CausalMBSTS = derive2 { name="CausalMBSTS"; version="0.1.1"; sha256="1mjw2zyddkci6vkbyz3d94l5z1aj3rc2w6lag5igbfv4q0n5qcrp"; depends=[CholWishart forecast KFAS MASS Matrix MixMatrix]; }; - CausalMetaR = derive2 { name="CausalMetaR"; version="0.1.1"; sha256="0pkiprr64ixswm203jq483940j5p2aapbsmnzidb7hspr04adgnv"; depends=[glmnet metafor nnet progress SuperLearner]; }; + CausalMetaR = derive2 { name="CausalMetaR"; version="0.1.2"; sha256="03y973ph52qxh9kyiybrvgrk5b1kd6i1lynkmmmv40vbnx59fs7y"; depends=[glmnet metafor nnet progress SuperLearner]; }; CausalModels = derive2 { name="CausalModels"; version="0.2.0"; sha256="19m1qfzssrwmsxiiyqiqby102qmxxcmbyxhggd9bb44z2iicf8cl"; depends=[boot causaldata geepack multcomp]; }; - CausalQueries = derive2 { name="CausalQueries"; version="1.0.2"; sha256="07g5ij14a9h756wbzfmy4wyyk8k16kvjv7b1li2mbw14vcv0jd80"; depends=[BH dagitty dirmult dplyr ggdag ggplot2 latex2exp lifecycle Rcpp RcppArmadillo RcppEigen rlang rstan rstantools StanHeaders stringr]; }; + CausalQueries = derive2 { name="CausalQueries"; version="1.1.1"; sha256="0bivanhgimfnw1dn16ggyj6yjjq1j3jv05xwixqcg96zdnw5va4z"; depends=[BH dagitty dirmult dplyr ggdag ggplot2 knitr latex2exp lifecycle Rcpp RcppArmadillo RcppEigen rlang rstan rstantools StanHeaders stringr]; }; CautiousLearning = derive2 { name="CautiousLearning"; version="1.0.1"; sha256="1m5x93l4bscrpcxk0pva6d6n2qnzhzxh0a6a81p97l8lqgs1qw2q"; depends=[BH Rcpp sitmo spc]; }; CePa = derive2 { name="CePa"; version="0.8.0"; sha256="1wjm6nyjaz3z0g2dxk1k82va86qxx2xsgx02y9ipyzf1ldxclm1s"; depends=[graph igraph Rgraphviz]; }; CeRNASeek = derive2 { name="CeRNASeek"; version="2.1.3"; sha256="0l36bz73xy9miikqdigbnyr0bk83dx6wsaqlsc14b0r64jca4ak6"; depends=[gtools igraph survival]; }; CenBAR = derive2 { name="CenBAR"; version="0.1.1"; sha256="1k8ycm2rzwadr5bg6m0ay81c5v4wjg04yigch6a1w7g75gw01q50"; depends=[cvTools foreach glmnet MASS mvtnorm survival]; }; - CensMFM = derive2 { name="CensMFM"; version="3.0"; sha256="060cr5iz2ch27j09mkd758y3chanrx5r9b9fnwpdhxh5kiv07mkz"; depends=[ggplot2 gridExtra MomTrunc mvtnorm tlrmvnmvt]; }; + CensMFM = derive2 { name="CensMFM"; version="3.1"; sha256="00z425r6ijs8zgmw0srcia9v90m57y2aq8zrlspgc5qf8kzxq1iv"; depends=[ggplot2 gridExtra MomTrunc mvtnorm tlrmvnmvt]; }; CensSpatial = derive2 { name="CensSpatial"; version="3.6"; sha256="10jgr9zvdvm8fgh0llfsxjkd5f565i1qh00zrqxz55is7p4r3h35"; depends=[geoR lattice moments msm mvtnorm numDeriv optimx psych raster Rcpp tlrmvnmvt tmvtnorm]; }; Census2016 = derive2 { name="Census2016"; version="0.2.0"; sha256="1c88jmd565v19w8dbvai10f9y5lyfmzsxsjblc3gdykf9kharvcq"; depends=[data_table]; }; CerioliOutlierDetection = derive2 { name="CerioliOutlierDetection"; version="1.1.13"; sha256="1m1mj5cf0sfdfci05ayc86wfx3cj12dfn98pi7cqxcf5nbn3h3n5"; depends=[robustbase]; }; Certara_NLME8 = derive2 { name="Certara.NLME8"; version="1.2.4"; sha256="10zmzfx2aqxj5gpingl6hkq6vb7q0shhkzar2jr30br7nzfll1sd"; depends=[batchtools data_table reshape xml2]; }; Certara_R = derive2 { name="Certara.R"; version="1.1.0"; sha256="07k7dj37zywkfbrx85gnl6cvc0a0n1xyvmac0lg74nzqb6qb3i1z"; depends=[batchtools data_table dplyr DT ggplot2 htmltools jsonlite magrittr plotly remotes reshape rlang shiny shinyjqui shinyjs shinymaterial shinyWidgets sortable ssh xml2]; }; - ChIPtest = derive2 { name="ChIPtest"; version="1.0"; sha256="1yn5b5s56k2dbhw6damxj18xbaiz180ym7fiq2i3p2gkcgwpddbz"; depends=[]; }; ChainLadder = derive2 { name="ChainLadder"; version="0.2.18"; sha256="0q0ycwswi1hxcv1apq40kzb91sgzbwb84nynd84750r449hbwrif"; depends=[actuar cplm ggplot2 lattice MASS Matrix statmod systemfit tweedie]; }; - ChangePointTaylor = derive2 { name="ChangePointTaylor"; version="0.2"; sha256="0rf3h7l8l6fw2i489ldcqhsf9ppjzpx298p5ciyp9iyc0zcykz38"; depends=[bench dplyr ggplot2 magrittr purrr Rcpp rlang tidyr]; }; ChangepointTesting = derive2 { name="ChangepointTesting"; version="1.1"; sha256="0gasqf39hhrd2pg2rq4a2aaxwi3syjvmgdiss42wdwb47dww8wil"; depends=[]; }; ChannelAttribution = derive2 { name="ChannelAttribution"; version="2.0.7"; sha256="0ak7s5l990kfkf5bzggqplss5pd06rfalghk1rzy92js1n1qxrs7"; depends=[Rcpp RcppArmadillo]; }; ChannelAttributionApp = derive2 { name="ChannelAttributionApp"; version="1.3"; sha256="0n9g8wwvc8p5clypl7z23w8fs6d0c47bblijwd4pjwy26bcb4m8h"; depends=[ChannelAttribution data_table ggplot2 shiny]; }; @@ -888,6 +899,7 @@ in with self; { CircOutlier = derive2 { name="CircOutlier"; version="3.2.3"; sha256="1vyac4mjkn6p4p9n5finqqak6g7m3hj04a66v3w797jn1wbd1xly"; depends=[CircStats circular]; }; CircSpaceTime = derive2 { name="CircSpaceTime"; version="0.9.0"; sha256="0dplgm5x4c1xxnv6062n643mn5zh0najw3f41pv2qafc1lil4wx8"; depends=[circular coda ggplot2 Rcpp RcppArmadillo RInside]; }; CircStats = derive2 { name="CircStats"; version="0.2-6"; sha256="07bg4zrs2iqh0pmi44pybi8hlvnxwcaa5zpg85rmf55kflxxkzlf"; depends=[boot MASS]; }; + CirceR = derive2 { name="CirceR"; version="1.3.3"; sha256="19pkj9qg6sfyxqvlwssfyr91024arbg74pl332g19917538n346q"; depends=[rJava RJSONIO]; }; CirclesIntersections = derive2 { name="CirclesIntersections"; version="1.1"; sha256="0q7w3fl8qz5gknri217qq68wij355dljnpv538yqhf03h405xc3f"; depends=[]; }; CircularDDM = derive2 { name="CircularDDM"; version="0.1.0"; sha256="1wxdjj7dndvhvl00cykcrwmw9f7halsg3a0db56kp2mhf54rj37z"; depends=[Rcpp RcppArmadillo]; }; CircularSilhouette = derive2 { name="CircularSilhouette"; version="0.0.1"; sha256="03214kqpnfjr9swafy1yjwr2jjj3iafb6ikn2sd45k2cx4xvprr3"; depends=[OptCirClust Rcpp Rdpack]; }; @@ -896,17 +908,18 @@ in with self; { ClaimsProblems = derive2 { name="ClaimsProblems"; version="0.2.1"; sha256="10ylcikss9ld393cb40ddkkz7as1d5bnrna0sqwdrn1cb3p9p4w2"; depends=[geometry pracma rgl]; }; ClamR = derive2 { name="ClamR"; version="2.1-3"; sha256="1qf0xflzww2vdv3sl2s8lncmv4k7aa4wbgpqm9v8slsa615a6n09"; depends=[]; }; ClassComparison = derive2 { name="ClassComparison"; version="3.1.8"; sha256="0fd5s4697pvj295fzvvn5mislf42wfzrcvks17v98388rph586gl"; depends=[Biobase oompaBase]; }; - ClassDiscovery = derive2 { name="ClassDiscovery"; version="3.4.0"; sha256="06l7jvpcdynij05hb0ka33zpg7xdyqyzfzx24s0bnlspp83yc62s"; depends=[Biobase cluster mclust oompaBase oompaData]; }; - CleanBSequences = derive2 { name="CleanBSequences"; version="1.4.0"; sha256="194590508s0j5z6srm2vmv6aa4d2fia4apbd3zmd8ria27ppcrfg"; depends=[Biostrings]; }; + ClassDiscovery = derive2 { name="ClassDiscovery"; version="3.4.5"; sha256="0k70s7nlmxymxw84174ikqx854hi0pizd9acpr7ky8fb30fyxg31"; depends=[Biobase cluster mclust oompaBase oompaData]; }; + CleanBSequences = derive2 { name="CleanBSequences"; version="2.3.0"; sha256="1ijybrl1x2rb70x6q07bbyv5mm0gw927wnf94mhz199z4s37iv4g"; depends=[Biostrings pwalign]; }; + CleaningValidation = derive2 { name="CleaningValidation"; version="1.0"; sha256="0wfywvmglsjckf734g7lq2gq9366ya2bsrihiinx9n37ydc5w6kg"; depends=[AER boot cowplot dplyr dunn_test ggplot2 lme4 rlang]; }; ClickClust = derive2 { name="ClickClust"; version="1.1.6"; sha256="09pb8fpddyzqznwxz1njpvwyqd45ywbaxj9sx5dzg134c7cz1z5j"; depends=[]; }; ClickClustCont = derive2 { name="ClickClustCont"; version="0.1.7"; sha256="1caymvpwvxq4rirnjm2kwzvqm1pl01rdc3785k8mq4k2m0n6l2rz"; depends=[gtools]; }; - ClickHouseHTTP = derive2 { name="ClickHouseHTTP"; version="0.3.2"; sha256="1vk8am5yvg4i5rgkgw1y0ngidd052wmc3700sx8ggnnk28vrnpsr"; depends=[arrow data_table DBI httr jsonlite]; }; + ClickHouseHTTP = derive2 { name="ClickHouseHTTP"; version="0.3.3"; sha256="0k8rl7vf4dd2jp8xk03v007mrmjz5w4lbgagmsylv73lm35485zh"; depends=[arrow data_table DBI httr jsonlite]; }; CliftLRD = derive2 { name="CliftLRD"; version="0.1-1"; sha256="0qsdv568klxg6chgw329jbfjmf6w61hly2vxp90yzdfkca03z2s4"; depends=[CNLTreg liftLRD]; }; ClimClass = derive2 { name="ClimClass"; version="2.1.0"; sha256="1r836md31z2r5d9xckkbalzbhm4kf5paljv71kxpy53q92k7yi91"; depends=[geosphere ggplot2 reshape2]; }; ClimInd = derive2 { name="ClimInd"; version="0.1-3"; sha256="0n5kd001nkpks16c3msvn2qvzyrjawa2rqwh8zph2qr5hgpwcpg7"; depends=[chron SPEI weathermetrics]; }; ClimMobTools = derive2 { name="ClimMobTools"; version="1.2"; sha256="1kx1hkyn96bhw237hvzrkr1hc8nf02p90lz9gg0rzcjx0zhks4s7"; depends=[httr jsonlite lpSolve Matrix RSpectra]; }; ClimProjDiags = derive2 { name="ClimProjDiags"; version="0.3.3"; sha256="039rnjpsbq90x6h9snz9iy37bwhapcmw9v98ngh82bsh19h8hwb1"; depends=[multiApply PCICt]; }; - ClinSigMeasures = derive2 { name="ClinSigMeasures"; version="1.0"; sha256="0fw89a1q92ck32z6w4zn1ldvky6ag1gi7b9bbv10mhmqhq4w3k58"; depends=[]; }; + ClinSigMeasures = derive2 { name="ClinSigMeasures"; version="1.1"; sha256="0dm2shknf83d6wmmjqly1493g30qm68sizj2n5jcc8gwi3xfcs9z"; depends=[]; }; ClinicalTrialSummary = derive2 { name="ClinicalTrialSummary"; version="1.1.1"; sha256="0b5by4sn9yvrvxr9921yqsgp8ma3g1hi2qbp5j9m836db1zjhyla"; depends=[Rcpp]; }; ClinicalUtilityRecal = derive2 { name="ClinicalUtilityRecal"; version="0.1.0"; sha256="17xj9cmdkjrzx7mshka2hlkxh8887sprdqix7fd8jcr9bmc6ad9r"; depends=[caret cowplot ggplot2 lattice nloptr]; }; CliquePercolation = derive2 { name="CliquePercolation"; version="0.4.0"; sha256="17m8pj8wg2ngzip1ag3jm5fqi083ilrsi0rvpcg5jmqflwlka8h3"; depends=[colorspace igraph lessR magrittr Matrix ohenery pbapply Polychrome qgraph]; }; @@ -916,11 +929,12 @@ in with self; { ClusBoot = derive2 { name="ClusBoot"; version="1.2.1"; sha256="03xch4s8xlvl17vbpm3jk0a6faa57hq0amyg91d9kjr4d6bb4km1"; depends=[]; }; ClusPred = derive2 { name="ClusPred"; version="1.1.0"; sha256="12pm5vkfxpaincv9ajid0p07l0mjc2kfqqfg0ls2pcxmmkh8wwb4"; depends=[ald ALDqr quantreg Rcpp RcppArmadillo VGAM]; }; ClusROC = derive2 { name="ClusROC"; version="1.0.2"; sha256="055ppcnzwkapnyf9xvld4bvkccwf494gqcb2qq0vnsa8n6bz5k46"; depends=[doParallel ellipse foreach ggplot2 ggpubr iterators nlme numDeriv Rcpp RcppArmadillo rgl]; }; + ClusTCR2 = derive2 { name="ClusTCR2"; version="1.7.3.01"; sha256="1l54x7b9pkkmrdhry41qikyhhnsr2s669jdqmviskjljk9wyyyqi"; depends=[DescTools ggplot2 ggseqlogo network plyr RColorBrewer scales sna stringr VLF]; }; ClusTorus = derive2 { name="ClusTorus"; version="0.2.2"; sha256="052jq96xr9qrc203ib11qsni50j0jzdpfwmbnd5rypfvff6w5kxc"; depends=[BAMBI cowplot ggplot2 igraph purrr rlang]; }; ClusVis = derive2 { name="ClusVis"; version="1.2.0"; sha256="06yckdl3gxjia1gjjqpc29lvy4f7qf47fncslng9ggjnks6il145"; depends=[MASS mgcv mvtnorm Rcpp RcppArmadillo Rmixmod VarSelLCM]; }; ClussCluster = derive2 { name="ClussCluster"; version="0.1.0"; sha256="1436849m2mnm8j7lf653zv8lcvvg2ch8kkks4bvr39kx21wxy8ss"; depends=[ggplot2 reshape2 rlang scales VennDiagram]; }; ClustAssess = derive2 { name="ClustAssess"; version="0.3.0"; sha256="0b8p5dpb843rv8q1hsc74zhxyn9wjgdxwpwrbq2yx4jmy8v65gzq"; depends=[doParallel dplyr fastcluster foreach ggplot2 igraph irlba magrittr Matrix progress Rcpp reshape2 rlang stringr uwot]; }; - ClustBlock = derive2 { name="ClustBlock"; version="3.2.0"; sha256="10nd53lzrdd3x1hhr88wr509qnbgpf707xr1qhc8r1jcjlipqpxn"; depends=[FactoMineR]; }; + ClustBlock = derive2 { name="ClustBlock"; version="4.0.0"; sha256="1gqq6wq79c6ikz8nxrahqdnl8g204y4sw82fvmrykh8xv3hzv2cp"; depends=[FactoMineR]; }; ClustGeo = derive2 { name="ClustGeo"; version="2.1"; sha256="03f7appg9n90ahzjhh5si9iv1vm06im9qmhgfc72fvqrmvqy2alh"; depends=[sp spdep]; }; ClustImpute = derive2 { name="ClustImpute"; version="0.2.4"; sha256="0ss7zsnamh8ir2wpgy6swxck93yr4dd7g7hvyzc1cv6g3k28fb49"; depends=[ClusterR copula dplyr ggplot2 knitr magrittr rlang tidyr]; }; ClustOfVar = derive2 { name="ClustOfVar"; version="1.1"; sha256="0grhkab7s58ji4cf7cxh7ahd2dxrj8aqfdf3119b40zxkxbwxcr0"; depends=[PCAmixdata]; }; @@ -930,32 +944,37 @@ in with self; { ClusterR = derive2 { name="ClusterR"; version="1.3.2"; sha256="1bs1sl3yy90zx4ni0lhvdivzfas6i4v9203m59njvk5df9x82ffp"; depends=[ggplot2 gmp lifecycle Rcpp RcppArmadillo]; }; ClusterRankTest = derive2 { name="ClusterRankTest"; version="1.0"; sha256="01gzalhibqcdx3a6yc2cm1v77rscva73v5m5m0qkrgqdp9c8ph2a"; depends=[]; }; ClusterStability = derive2 { name="ClusterStability"; version="1.0.4"; sha256="1y88dv7n2cxm5w9pbg36dvx55nzvsnq4vbmx401147xr5p03yk9w"; depends=[cluster copula Rcpp WeightedCluster]; }; + ClusterVAR = derive2 { name="ClusterVAR"; version="0.0.6"; sha256="03iwwy8ijz4rxsainlriy6g5mkn4wl7hwgk9mm0cwfxvai3r1n28"; depends=[doParallel fastDummies foreach iterators MASS mvtnorm parabar scales]; }; ClusteredMutations = derive2 { name="ClusteredMutations"; version="1.0.1"; sha256="1n31nnvpjh1faw751k8m3ga3wfl0yhdpnszwckqhfzlma1jr8z04"; depends=[seriation]; }; - Clustering = derive2 { name="Clustering"; version="1.7.7"; sha256="0g0pwdqxbwpv48q2kavarvbryvdq9g3qyxpwc9c1zip03yl76v5v"; depends=[amap apcluster cluster ClusterR data_table doParallel dplyr foreach future ggplot2 gmp pracma pvclust shiny sqldf toOrdinal xtable]; }; + Clustering = derive2 { name="Clustering"; version="1.7.10"; sha256="051x3140xr8g0grlmsff4m8gfc613hrfgldy0a7nm0f9w90ragsx"; depends=[amap apcluster cluster ClusterR data_table dplyr foreach future ggplot2 gmp pracma pvclust shiny sqldf toOrdinal xtable]; }; CoClust = derive2 { name="CoClust"; version="0.3-2"; sha256="04xv807785xv9kdspsspx1302ardv8gda06kd590lgawjixai7dh"; depends=[copula gtools]; }; CoDaImpact = derive2 { name="CoDaImpact"; version="0.1.0"; sha256="0hc76s7k3i8mjq0q0yg9fn6vv7xd7w2j1hym23rkpn6gxjl522jx"; depends=[compositions]; }; CoDiNA = derive2 { name="CoDiNA"; version="1.1.2"; sha256="1zjj86z8ica9j0x2nfyq9y6nyp54w07dwskcsg7z6kqibrkfvaq9"; depends=[data_table igraph magrittr plyr reshape2 visNetwork]; }; CoFRA = derive2 { name="CoFRA"; version="0.1002"; sha256="0ldf84dxaanww3qkf64mz5gv3yv2rjp9m6dy64xckds66vw6x0m3"; depends=[gplots stringr]; }; - CoImp = derive2 { name="CoImp"; version="1.0"; sha256="06y722flpiqpwq0p7ik86s09mdnvqw3hdybhdzn8vfns5swc8x1y"; depends=[copula gtools locfit nnet]; }; + CoImp = derive2 { name="CoImp"; version="2.0.0"; sha256="0g6fd0rzab5wn19iljr5zjbffrgs9nyljjccwb0fnarmp48lfrwk"; depends=[cluster copula gtools locfit nnet]; }; CoMiRe = derive2 { name="CoMiRe"; version="0.8"; sha256="0wq1li1snn4c01vw1zqv6s9sqjrmiw04pkkmx2zdy5wg6bzfz363"; depends=[ggplot2 gtools KernSmooth mvtnorm Rcpp RcppArmadillo rlang splines2 truncnorm]; }; CoNI = derive2 { name="CoNI"; version="0.1.0"; sha256="19nyn4gh4bnrvbbh2df8459015fkb2bgwwmq17vqq7r2j4gkgxzh"; depends=[cocor data_table doParallel dplyr forcats foreach genefilter ggplot2 ggrepel gplots gridExtra Hmisc igraph plyr ppcor rlang tibble tidyr tidyselect]; }; CoOL = derive2 { name="CoOL"; version="1.1.2"; sha256="18z7s8bvnym4xj0hh5m6bwm86ddmsgivqv4g5zbd9m87l7khl9pn"; depends=[ClustGeo data_table ggplot2 mltools plyr pROC Rcpp RcppArmadillo wesanderson]; }; CoRpower = derive2 { name="CoRpower"; version="1.0.4"; sha256="08chsbbl74rskinp68pwzpvnxx5lkfqf71j7ryp1cwy7199h3jyw"; depends=[osDesign survival]; }; CoSMoS = derive2 { name="CoSMoS"; version="2.1.0"; sha256="149mybfxaqssawp8fqhjiv3xljzflc02y4pfvavz7rklfplidqkb"; depends=[animation cowplot data_table directlabels ggplot2 ggquiver mAr Matrix matrixcalc MBA mvtnorm nloptr plot3D pracma]; }; - CoTiMA = derive2 { name="CoTiMA"; version="0.7.0"; sha256="1mpinx6wql4fqyfpc94nxw7qav0llg6pyd0kl0wilkfv9vc12yml"; depends=[abind crayon ctsem doParallel foreach lavaan MASS MBESS OpenMx openxlsx psych rootSolve RPushbullet scholar stringi zcurve]; }; + CoTiMA = derive2 { name="CoTiMA"; version="0.8.0"; sha256="15kc15jax3z4bfwq0mf7dahwv68nq4njj5a0gwzbr1ww4rrwg1r1"; depends=[abind crayon ctsem doParallel foreach lavaan MASS MBESS OpenMx openxlsx psych rootSolve RPushbullet scholar stringi zcurve]; }; CoastlineFD = derive2 { name="CoastlineFD"; version="1.1.2"; sha256="1l6igxvp4sz09bbgqjn6kwddi4mciw5ihcmzlg87pqhr1zs2yjbi"; depends=[fields ggplot2 progress readxl sf sfheaders tidyr writexl]; }; CodataGS = derive2 { name="CodataGS"; version="1.43"; sha256="1bjn6s1f5jn64gwrvjz5kvwfkbqrqhavib6dj9k37rb5nzqkwhp6"; depends=[Matrix]; }; - CodelistGenerator = derive2 { name="CodelistGenerator"; version="2.2.3"; sha256="0jx4xjihlgssr0ajdv9zcinj58c8fxqcvpr0y6cbmqymczgs1win"; depends=[CDMConnector checkmate cli DBI dplyr duckdb glue lubridate magrittr omopgenerics PatientProfiles purrr RJSONIO rlang stringr tidyr tidyselect vctrs]; }; + CodeDepends = derive2 { name="CodeDepends"; version="0.6.6"; sha256="0msq5ksjqp2pjzl6f1vizw53gdf5lz520bpdr5dbjwz5mc1mp0bz"; depends=[codetools graph XML]; }; + CodelistGenerator = derive2 { name="CodelistGenerator"; version="3.0"; sha256="1fg9xbznd5zmn35rfg52899yx0di7hqx6sznvd8a9gnc2xrp4723"; depends=[checkmate cli DBI dplyr glue lifecycle lubridate magrittr omopgenerics PatientProfiles purrr RJSONIO rlang stringr tidyr tidyselect vctrs visOmopResults]; }; CohensdpLibrary = derive2 { name="CohensdpLibrary"; version="0.5.10"; sha256="1d3nk3wr23skmzskglw7n8vpj9ja6ak4q9db9xlmf1j3plsx5g98"; depends=[Rdpack]; }; - CohortAlgebra = derive2 { name="CohortAlgebra"; version="0.2.0"; sha256="1aqafccdxivg21bb7pxy47yfk7d5gbiyby8hm472n1vrznmiq4b6"; depends=[checkmate DatabaseConnector dplyr lifecycle rlang SqlRender]; }; + CohortAlgebra = derive2 { name="CohortAlgebra"; version="0.3.0"; sha256="05sn073sfmngjbq2g198nckxw2zwk2jj69xf3pddlrka05v3a1b9"; depends=[checkmate DatabaseConnector dplyr lifecycle rlang SqlRender]; }; + CohortCharacteristics = derive2 { name="CohortCharacteristics"; version="0.2.1"; sha256="1hyd0pl3aq7ww3szr7p0zb4cnvk9x1a6kpg04qdv9x72wkl6mscq"; depends=[CDMConnector checkmate cli DiagrammeR dplyr ggpubr magrittr omopgenerics PatientProfiles rlang snakecase stringr tidyr visOmopResults]; }; + CohortConstructor = derive2 { name="CohortConstructor"; version="0.2.1"; sha256="0wa02j80zy4sq7p7hyx97yvfbgfgb1zr0qa9vlhv6xy7m0wggqlz"; depends=[CDMConnector checkmate cli dbplyr dplyr glue magrittr omopgenerics PatientProfiles purrr rlang tidyr]; }; CohortExplorer = derive2 { name="CohortExplorer"; version="0.1.0"; sha256="1jskxg72g7n5n3zg2kmkhykcrbf30q0h919273n6lm6nw0pzn44d"; depends=[checkmate DatabaseConnector dplyr lifecycle ParallelLogger rlang]; }; CohortPlat = derive2 { name="CohortPlat"; version="1.0.5"; sha256="01jvi7k3lvx684c4cwn3xrpwjsksk7gjvs3db64ji7chc4lkajv4"; depends=[doParallel dplyr epitools forcats foreach ggplot2 openxlsx plotly purrr tidyr zoo]; }; - CohortSurvival = derive2 { name="CohortSurvival"; version="0.3.0"; sha256="1kppnk97iyl2g4iby8n4f2b7ix5n340igr3z0ilmnnm7nad3r9h6"; depends=[broom CDMConnector checkmate cli DBI dbplyr dplyr lubridate magrittr omopgenerics PatientProfiles rlang scales stringr survival tibble tidyr]; }; + CohortSurvival = derive2 { name="CohortSurvival"; version="0.5.1"; sha256="03pca2isc7gq9nkkghwqcjf35fn23iacdxsx04v3yacapl8975cn"; depends=[broom CDMConnector checkmate cli DBI dbplyr dplyr lubridate magrittr omopgenerics PatientProfiles rlang scales stringr survival tibble tidyr visOmopResults]; }; + CohortSymmetry = derive2 { name="CohortSymmetry"; version="0.1.0"; sha256="1vbk701yz7wcfv906a12h26m2hq787x91lz2c8qn62vxlb794q1h"; depends=[CDMConnector dplyr ggplot2 magrittr omock omopgenerics PatientProfiles rlang stringr tibble tidyr visOmopResults]; }; Coinprofile = derive2 { name="Coinprofile"; version="0.1.9"; sha256="1bcip62gm34cx5m8a1mx9px2rhgvdmsgnn6q9q40k8p5hw4cx9g0"; depends=[coin exactRankTests ggplot2 plyr Rdpack zoo]; }; CollapseLevels = derive2 { name="CollapseLevels"; version="0.3.0"; sha256="1d2grxh95893j260igh4yh2z3rm3zymlpadqyp6w3na91birazb4"; depends=[dplyr ggplot2 lazyeval magrittr]; }; CollocInfer = derive2 { name="CollocInfer"; version="1.0.4"; sha256="1iwf5g2y7i0j8dc19hdhya4m6g47jj968glnclj7a2yaq2yx37cj"; depends=[deSolve fda MASS Matrix spam]; }; ColorNameR = derive2 { name="ColorNameR"; version="0.1.0"; sha256="0gqyph3f6mhwg6zwc5bgfglpmg152a4kd2wrmp9jn18wvg8wd03g"; depends=[dplyr magrittr purrr rlang]; }; - Colossus = derive2 { name="Colossus"; version="1.0.1"; sha256="1mnjsl9v24dnk7qc5hhgsl56zhb86cjvaaqqqnqgqzy4h1vfc3vc"; depends=[data_table ggplot2 Rcpp RcppEigen rlang testthat]; }; + Colossus = derive2 { name="Colossus"; version="1.1.1"; sha256="01mra2ai88p10qwmsc1ph4kpgyvd4f3crk2gl5w782qggfgfabv8"; depends=[callr data_table processx Rcpp RcppEigen rlang stringr testthat]; }; ComICS = derive2 { name="ComICS"; version="1.0.4"; sha256="0brsb7y1bg23sdpxs4j1y3xdgr1q7iinxnnp17rravw72l991xqa"; depends=[glmnet]; }; ComRiskModel = derive2 { name="ComRiskModel"; version="0.2.0"; sha256="0jpsmcpi7s0y4dff3k10daimb4gfq7r5sf1w8n51q21zfgf3mn4d"; depends=[AdequacyModel]; }; CombinS = derive2 { name="CombinS"; version="1.1-1"; sha256="06g41zbjl54cbhhs8q7l4bbvszclvbxn3m2dqg800d6ghs9vgl6v"; depends=[]; }; @@ -967,7 +986,9 @@ in with self; { Comp2ROC = derive2 { name="Comp2ROC"; version="1.1.4"; sha256="06hpbid9z1pzg7k4gqp2zn8l7sm375z32fsn54i27qbl3inp7m2d"; depends=[boot ROCR]; }; CompAREdesign = derive2 { name="CompAREdesign"; version="2.3.1"; sha256="0jdfrn8p13d369gwfkyiydwv6451gvz8qiiij74bj2zjpq7z6kc7"; depends=[copula ggplot2 ggpubr numDeriv rootSolve]; }; CompDist = derive2 { name="CompDist"; version="1.0"; sha256="02c18ksk6clv674yh79bzg3mh9hymzhal51j6g0rnvqd5ra8g66c"; depends=[actuar fExtremes numDeriv PearsonDS rmutil VGAM]; }; + CompExpDes = derive2 { name="CompExpDes"; version="1.0.0"; sha256="17ib9ln5rwy0jmadciqiynfqxyx57hfjyvp46pr9alix3sgh140q"; depends=[]; }; CompGR = derive2 { name="CompGR"; version="0.1.3"; sha256="0ck4kmb4h2i7qgikmy7i0cwhf14nh71pdf4mnss4ahxac4xsh2rr"; depends=[]; }; + CompMix = derive2 { name="CompMix"; version="0.1.0"; sha256="1b7vmkyqh8m2p72wr469anwqwghiw6m9f1p8q3mr6l1pgx7nqhsn"; depends=[bkmr devtools gglasso glmnet gWQS hierNet higlasso Matrix mvtnorm pROC qgcomp randomForest SuperLearner]; }; CompModels = derive2 { name="CompModels"; version="0.3.0"; sha256="1373m324zq7f3wffb25ypjidvsxki0p64iv4qy8i887g4f8inq6q"; depends=[]; }; CompPareto = derive2 { name="CompPareto"; version="0.1.0"; sha256="1g2cas8pld75wjsvs73knpxyjlaggq5vrzb63hcv3bi29wcwjlzz"; depends=[actuar]; }; CompQuadForm = derive2 { name="CompQuadForm"; version="1.4.3"; sha256="1i30hrqdk64q17vsn918c3q79brchgx2wzh1gbsgbn0dh1ncabq4"; depends=[]; }; @@ -976,10 +997,10 @@ in with self; { CompareMultipleModels = derive2 { name="CompareMultipleModels"; version="0.1.0"; sha256="0qzybbxx5kqlrb260c0wh2vhp3ci5wk6853mm01wfyivhvf7sz0h"; depends=[CEEMDANML]; }; CompareTests = derive2 { name="CompareTests"; version="1.2"; sha256="1z96kh851bpr2szgyjszkpv6m5ma6abz7hrm50fgvfpgxkj7f4yi"; depends=[]; }; ComparisonSurv = derive2 { name="ComparisonSurv"; version="1.1.1"; sha256="0lidakxb1ab6bpb7sf2arjl1xpym1lzxbh63g0x4c2dm7h0kzkwi"; depends=[muhaz survival survRM2 TSHRC]; }; - Compind = derive2 { name="Compind"; version="3.0"; sha256="0g5m1dpnadgqszk079rxf6rm0d17qnvfzi7fwbs99sl2nimy3ni9"; depends=[Benchmarking boot FactoMineR GPArotation GWmodel Hmisc lpSolve MASS nonparaeff np psych smaa sp spdep]; }; + Compind = derive2 { name="Compind"; version="3.1"; sha256="0k45gazca94dscqhy05p68k755al4gd1gilz5svq5h6cv5fijhxk"; depends=[Benchmarking boot FactoMineR GPArotation GWmodel Hmisc lpSolve MASS nonparaeff np psych Rcompadre smaa sp spdep]; }; ComplexUpset = derive2 { name="ComplexUpset"; version="1.3.3"; sha256="1sk4v5kc2wkgfaws0hjlp30mngm907r5gz1iglf68j46lfs9jbsv"; depends=[colorspace ggplot2 patchwork scales]; }; CompositeReliability = derive2 { name="CompositeReliability"; version="1.0.3"; sha256="04qpwqrz1x1hdjfin77fb4kywv9sspzdq7kn4f7jxaaz3ykhrhkc"; depends=[dplyr ggplot2 lme4 magrittr plyr psych reshape2 Rsolnp tidyr]; }; - Compositional = derive2 { name="Compositional"; version="6.7"; sha256="0f9fq9b38jgylzbgszalnwmw5l1a5yviin22am848gicy98sz22x"; depends=[codalm Directional doParallel emplik energy FlexDir foreach glmnet MASS mda mixture mvhtests nnet pchc quadprog regda Rfast Rfast2 Rnanoflann sn]; }; + Compositional = derive2 { name="Compositional"; version="6.8"; sha256="066fn6qndxgz6lp15wznjq1jhbiq917iiidkx5py3ixdk3gbbg7c"; depends=[cluster Directional doParallel emplik energy FlexDir foreach glmnet MASS Matrix mda mixture mvhtests nnet pchc quadprog regda Rfast Rfast2 Rnanoflann sn]; }; CompositionalML = derive2 { name="CompositionalML"; version="1.0"; sha256="1gnr8iqgwx461gm0ff1gvi6j8rw19a1lhz560hcq7sgymzp66l5r"; depends=[Boruta Compositional doParallel e1071 foreach ranger Rfast Rfast2]; }; CompoundEvents = derive2 { name="CompoundEvents"; version="0.3.0"; sha256="184dqy6dw6mrw1xpim335fmfnv0a8gmn2siqb4d5fa2rn5vghmcn"; depends=[]; }; ConConPiWiFun = derive2 { name="ConConPiWiFun"; version="0.4.6.1"; sha256="1ziy646lbx297kia797xjxa8hyl826x1hiighyjslvnlvrhapx08"; depends=[Rcpp]; }; @@ -994,13 +1015,14 @@ in with self; { CondiS = derive2 { name="CondiS"; version="0.1.2"; sha256="19l26ajzbi58cnim1kgxb5wrilqpvz6znv01zd42s3w6899km28b"; depends=[caret kernlab purrr survival survminer tidyverse]; }; ConfIntVariance = derive2 { name="ConfIntVariance"; version="1.0.2"; sha256="0xm3vh3vmf16faa3934100rnrg4rvlqkgjlsqa2smzcvy5vb86z4"; depends=[]; }; ConfZIC = derive2 { name="ConfZIC"; version="1.0.1"; sha256="0x9933zirfdkg2ljm3kk1nalk9ri0rrqi11q07dkyh78p4w9lmsp"; depends=[cmna ltsa MuMIn mvtnorm psych tidytable]; }; + ConfidenceEllipse = derive2 { name="ConfidenceEllipse"; version="1.0.0"; sha256="0p3dkfj1r1prz40cly7apcnvh1m6537h0kjaljgqkhb6ylrxmlci"; depends=[cellWise dplyr forcats ggplot2 magrittr pcaPP purrr rgl rlang tibble tidyr tidyselect]; }; ConfigParser = derive2 { name="ConfigParser"; version="1.0.0"; sha256="0jjh6gz5qcqhirzkmg7a4lnf8n3mjly15x2mvbvdpjkk7iv3w9m3"; depends=[ini R6]; }; ConformalSmallest = derive2 { name="ConformalSmallest"; version="1.0"; sha256="0r74hbz0dmz69zsw2vdl858vj27p6f2xcpv1l1il4r52cmshg1h8"; depends=[glmnet MASS mvtnorm quantregForest]; }; ConfusionTableR = derive2 { name="ConfusionTableR"; version="1.0.4"; sha256="1qyw4shzgaaqmcn6yb52xaxrfwrji980j87baz4ngzckd60n77fi"; depends=[caret dplyr furrr magrittr purrr tidyr]; }; CongreveLamsdell2016 = derive2 { name="CongreveLamsdell2016"; version="1.0.3"; sha256="06vfcl65zn3xwpai33xxmp54r5hny8cr18ad3w8laa6fii5rfyhb"; depends=[Ternary]; }; Conigrave = derive2 { name="Conigrave"; version="0.4.4"; sha256="02nvk5ya9gr06ai8qnjw0xq6hfbrr91b6lx9gq08dbrnmpbmyvqz"; depends=[dplyr ggplot2 miceadds mitools ppcor stringdist stringr]; }; ConnMatTools = derive2 { name="ConnMatTools"; version="0.3.5"; sha256="082y4xxnp42xa7db5hnbc9qlvkb50wwb3wzi0my04l55a9s0ril7"; depends=[]; }; - ConnectednessApproach = derive2 { name="ConnectednessApproach"; version="1.0.1"; sha256="086d874gnqgmqqqz296sfvrpi38fp1iqxsg0sd2xbllfnyx4gnzy"; depends=[frequencyConnectedness glmnet igraph MASS moments progress quantreg riskParityPortfolio rmgarch rugarch urca xts zoo]; }; + ConnectednessApproach = derive2 { name="ConnectednessApproach"; version="1.0.3"; sha256="1vbnj2r4x8pfzdagky33xz9kpb23d7vz5ddgms8fp15zjilsz2nw"; depends=[car frequencyConnectedness glmnet igraph L1pack MASS moments PerformanceAnalytics progress quantreg riskParityPortfolio rmgarch rugarch urca xts zoo]; }; ConsRank = derive2 { name="ConsRank"; version="2.1.4"; sha256="001hmiii7khh1q2wav38737svzr0anr42nyp8hhplqfbiw0cc4y2"; depends=[gtools proxy rgl rlist tidyr]; }; ConsRankClass = derive2 { name="ConsRankClass"; version="1.0.1"; sha256="02n6a3affm72vfhsjz90jl8x0qrvxsimlm1ng313s4zla515h8ap"; depends=[ConsRank janitor pracma proxy rlist]; }; ConsReg = derive2 { name="ConsReg"; version="0.1.0"; sha256="0ck188ahzprzvqdh2q05bcg9b68dw3xiqqb1xirbm4rp5chyr419"; depends=[adaptMCMC data_table DEoptim dfoptim FME forecast GA GenSA ggplot2 MCMCpack Metrics nloptr Rcpp rlang Rsolnp]; }; @@ -1012,7 +1034,7 @@ in with self; { ConvergenceConcepts = derive2 { name="ConvergenceConcepts"; version="1.2.3"; sha256="1y4kh00z63a9j8bsjgnf6lmwkivsf5zk8yw6i9d72a8jr2bhb78w"; depends=[lattice tkrplot]; }; ConvertPar = derive2 { name="ConvertPar"; version="0.1"; sha256="1czw97ya73dinad0n664045s9918a21kv97bpkal40kg029vnw59"; depends=[mirt neuralnet RWeka]; }; Convolutioner = derive2 { name="Convolutioner"; version="0.1.0"; sha256="1ria4ii7zdqgrzgdx4c82dj4lg791iwy2y66fv1qyibws0ag3bhq"; depends=[]; }; - CooRTweet = derive2 { name="CooRTweet"; version="2.0.1"; sha256="0xxzj67a3sxh0xhpjd9ywpxv8102bvlw6q2a19waq5i1s63a7cpm"; depends=[data_table igraph lubridate RcppSimdJson stringi tidytable]; }; + CooRTweet = derive2 { name="CooRTweet"; version="2.0.2"; sha256="0gziybfp640p2gskbz80kx9ikmg3mpk0m937iq44k1906lrvp9p2"; depends=[data_table igraph lubridate RcppSimdJson stringi tidytable]; }; CooccurrenceAffinity = derive2 { name="CooccurrenceAffinity"; version="1.0"; sha256="0wn8jkvm5x30vj1vy196l691kbs5aa3j09s5dsa2r54cr34d16mn"; depends=[BiasedUrn cowplot ggplot2 plyr reshape]; }; CoopGame = derive2 { name="CoopGame"; version="0.2.2"; sha256="0i4yw2nznmcps9s9f592nbs8dvncb0w2bynvsfkp21lzd4pfsp4n"; depends=[geometry gtools rcdd]; }; CoordinateCleaner = derive2 { name="CoordinateCleaner"; version="3.0.1"; sha256="0bs1vr145ab42i7x0jcsin6sfaxy05ly2i4qcrlvyvz303ynj0rf"; depends=[dplyr geosphere ggplot2 rgbif rnaturalearth terra tidyselect]; }; @@ -1022,15 +1044,15 @@ in with self; { CopernicusMarine = derive2 { name="CopernicusMarine"; version="0.2.3"; sha256="09kv2c7lkbnpzfs0i48dp3gvx6mwn89q0y3f4hbmm9iiyksrdw2i"; depends=[crayon dplyr httr2 leaflet purrr readr rlang rvest sf stringr tidyr xml2]; }; Copula_Markov = derive2 { name="Copula.Markov"; version="2.9"; sha256="18krq0q5i3j211g88sl153f1fa5crdcgclvl5lqawm7zykyzblh2"; depends=[]; }; Copula_Markov_survival = derive2 { name="Copula.Markov.survival"; version="1.0.0"; sha256="1sxg0ir39f4hj4m6imija0c88j513j6fflcp7xc0599iglwsrbvs"; depends=[survival]; }; - Copula_surv = derive2 { name="Copula.surv"; version="1.4"; sha256="0gk2qvdwa3wr55j7vkgm2jk1qcck1aqzsh30zc3cidgbk7m3icpv"; depends=[]; }; + Copula_surv = derive2 { name="Copula.surv"; version="1.6"; sha256="177m79nc9gwnfxai0gdw7id0212rxp34rpcp0b7j79r3zncwnb6i"; depends=[]; }; CopulaCenR = derive2 { name="CopulaCenR"; version="1.2.3"; sha256="1z1a9hrb5v784j46yc2dsbizbis8pb5zdbc4cky8yws7swiax5m1"; depends=[boot caret copBasic copula corpcor flexsurv foreach icenReg magrittr plotly pracma survival VineCopula]; }; - CopulaDTA = derive2 { name="CopulaDTA"; version="1.0.1"; sha256="1a9v398yn7gflpnsrgzap8gy1b676ri1m3fwiv1jpc5l1cw154pm"; depends=[ggplot2 plyr reshape2 rstan]; }; CopulaGAMM = derive2 { name="CopulaGAMM"; version="0.4.1"; sha256="1n5nbmmqz3jynqpv53kwha5s7h9h3br7y7b6798mskadvqc2x90k"; depends=[matrixStats statmod]; }; CopulaInference = derive2 { name="CopulaInference"; version="0.5.0"; sha256="10r2ni62fh6zl0im1n7apjf6kx2fprifn71rnaf7dh7xypdkqyw1"; depends=[doParallel foreach Matrix rvinecopulib]; }; - CopulaREMADA = derive2 { name="CopulaREMADA"; version="1.5.1"; sha256="027007xrzd2m7pgv8ki901aaf2957ih1lqh881viyd8hbfcfaghy"; depends=[matlab mc2d statmod tensor]; }; + CopulaREMADA = derive2 { name="CopulaREMADA"; version="1.6.2"; sha256="101ys5mqr51cj1rcvqc2mzanxil3z3pb4m1y3kwlzw3jz4cygrmk"; depends=[matlab mc2d statmod tensor]; }; CorBin = derive2 { name="CorBin"; version="1.0.0"; sha256="0mjvhj9cw21xjg96fz5bcyfxgwdw367l1942a38by77ylypdfq3y"; depends=[]; }; CorMID = derive2 { name="CorMID"; version="0.1.9"; sha256="08dr6c3pvich7arbq0ak9s356s29ynw4v6s1mz5bw9kddrrlswlq"; depends=[plyr Rdisop]; }; Corbi = derive2 { name="Corbi"; version="0.6-2"; sha256="13lbh6fcfrpgz459mjdnfkd8kys2350s8j0vv9ps18092264gh42"; depends=[CRF igraph MASS Matrix]; }; + CoreMicrobiomeR = derive2 { name="CoreMicrobiomeR"; version="0.1.0"; sha256="18zqs14j014qsmqqgn2yyf1djvr92spj46aq474jh6f8sdqvbqqz"; depends=[edgeR fastmatch ggplot2 ggrepel plotly reshape2 SRS vegan]; }; CornerstoneR = derive2 { name="CornerstoneR"; version="2.0.2"; sha256="04dvryhcyi7f6bmm4067cn5vmy7kdqi3bys7ln8nnsc0kkdjxhi5"; depends=[checkmate data_table minpack_lm ranger SpatialTools vcd]; }; CoronaNetR = derive2 { name="CoronaNetR"; version="0.3.0"; sha256="1qqlkcbwmr9g8rnsgb7dd1npd09sva11y6fy1g7l4wdvmpw07ymh"; depends=[httr R_utils readr]; }; CorrBin = derive2 { name="CorrBin"; version="1.6.1"; sha256="07nxara80zjpvaqjfjpwi2aw909wp1jj0v42dd0s06w00v502438"; depends=[boot combinat dirmult geepack mvtnorm]; }; @@ -1053,17 +1075,20 @@ in with self; { CoxICPen = derive2 { name="CoxICPen"; version="1.1.0"; sha256="0m6g4gi33y5vmpf790x38y8g8vpxvr5935lcz9vjw5kkmsjkln0g"; depends=[foreach]; }; CoxPlus = derive2 { name="CoxPlus"; version="1.1.1"; sha256="038wsz206bgc0pnzx403b5ihcwhxpkrpxmwvrvqcxf8333pb62l5"; depends=[Rcpp RcppArmadillo]; }; CoxR2 = derive2 { name="CoxR2"; version="1.0"; sha256="1fjsa403lbx0hi7b0gsdaz0q9axw521q4xzphbfbknify4y72md6"; depends=[survival]; }; - Coxmos = derive2 { name="Coxmos"; version="1.0.1"; sha256="0y7dcwzkj8yqwn44qd1cb1379a0xl5a1949sg7wn6gpgzyn9vgi4"; depends=[caret cowplot furrr future ggplot2 ggpubr ggrepel glmnet MASS mixOmics progress purrr Rdpack scattermore survcomp survival survminer svglite tidyr]; }; + Coxmos = derive2 { name="Coxmos"; version="1.0.2"; sha256="052af5hx820wmvflvz4pv3jlmmwap9d0lzx9k7v1ps6cidarz0wm"; depends=[caret cowplot furrr future ggplot2 ggpubr ggrepel glmnet MASS mixOmics progress purrr Rdpack scattermore survcomp survival survminer svglite tidyr]; }; CpGFilter = derive2 { name="CpGFilter"; version="1.1"; sha256="0ccvk7lawmay0wqdyhs6ww7396dcfzazn72sq6zwyw7dl45k2j0i"; depends=[matrixStats]; }; CpGassoc = derive2 { name="CpGassoc"; version="2.60"; sha256="1zx18x8pxjl2ajnj7a7lb8383m75ysg17f4mzz0vkgl5mnf617ny"; depends=[nlme]; }; CpmERCCutoff = derive2 { name="CpmERCCutoff"; version="1.0.0"; sha256="1vmfhdi4mmfbw5zz5yhsqrqz7w5jpg0ls6d22mm8bplgssrc2kk9"; depends=[]; }; - CptNonPar = derive2 { name="CptNonPar"; version="0.1.1"; sha256="1kilajx8afc01lg3xhn1nckc3pz7h15zw1js54p9ls8cw6ql3102"; depends=[doParallel foreach iterators parallelly Rcpp Rfast]; }; + CptNonPar = derive2 { name="CptNonPar"; version="0.2.1"; sha256="1mpjxy5wivadbska51g30594rqgdx3g0m4jr90lnnri2yb8a78kw"; depends=[doParallel foreach iterators parallelly Rcpp Rfast]; }; + CreditRisk = derive2 { name="CreditRisk"; version="0.1.7"; sha256="1jw8r0fzh5kmwygf5mrhg91ahv42gdvd1f91h5bwff6y08q3h345"; depends=[]; }; Cronbach = derive2 { name="Cronbach"; version="0.1"; sha256="1gkapi7pgf1mwidhgdf3y5cm4bz5igzb7mdflz560aa67asp1qyf"; depends=[boot]; }; CropScapeR = derive2 { name="CropScapeR"; version="1.1.5"; sha256="0dhziq4fybb987jv10g0wd4n765c4d87h86g96qg8wg6cx11vi6m"; depends=[data_table dplyr httr magrittr raster RJSONIO sf]; }; + CropWaterBalance = derive2 { name="CropWaterBalance"; version="0.2.0"; sha256="0hfy1y26v2cy1pi014zxrmp91ypnlb4jk1sa4zb0mhlmlxjmdijh"; depends=[lubridate PowerSDI]; }; CrossCarry = derive2 { name="CrossCarry"; version="0.1.0"; sha256="1iglwsx5b29zjl7ikngyb3kf0kfacqxlg01p6vn84dblwgh2gmak"; depends=[dplyr gee geepack ggplot2]; }; + CrossClustering = derive2 { name="CrossClustering"; version="4.1.2"; sha256="0by2kwykbm5il3smfi52vzzy18niqjgjflbza66dm5rlbny9dgpb"; depends=[checkmate cli cluster crayon dplyr flip mclust purrr]; }; CrossVA = derive2 { name="CrossVA"; version="1.0.0"; sha256="16ahw8h27acvqqixmwmsyl6rbjzxbn4pfyh2ls9rq852mc7mdg9b"; depends=[stringi]; }; CrossValidate = derive2 { name="CrossValidate"; version="2.3.4"; sha256="1q5wnw2llvlw3hbjg0zccipk3ns31m2339x1aj6m526zhvgl2wvx"; depends=[Modeler oompaBase]; }; - Crossover = derive2 { name="Crossover"; version="0.1-21"; sha256="0mqpfasqdgv4s77ln3c45pjgl2l7wb7b68jl46fzln184n0838l7"; depends=[CommonJavaJars crossdes digest ggplot2 JavaGD MASS Matrix multcomp Rcpp RcppArmadillo rJava xtable]; }; + Crossover = derive2 { name="Crossover"; version="0.1-22"; sha256="05fsl22h2q6l0g9hscs4f0w4d3skd9anr570ddmnqicxzdfpap5r"; depends=[CommonJavaJars crossdes digest ggplot2 JavaGD MASS Matrix multcomp Rcpp RcppArmadillo rJava xtable]; }; Crosstabs_Loglinear = derive2 { name="Crosstabs.Loglinear"; version="0.1.1"; sha256="0238652k1mv396wjxm058xvhp7rss0nkmn48bvkhq6pcryna2lzb"; depends=[]; }; CruzPlot = derive2 { name="CruzPlot"; version="1.4.8"; sha256="19dza13mdd67g7710bzzg1bi32nhgr3c5vcyh98igw3q8hfk7ac8"; depends=[dplyr DT geosphere mapdata maps marmap shiny shinydashboard shinyjs stringr swfscDAS]; }; CryptRndTest = derive2 { name="CryptRndTest"; version="1.2.7"; sha256="0skk0mgnkfknlbdidfh2jca1wa8rzgd29ypwpa8kdh83l9jhdi5g"; depends=[gmp kSamples LambertW Rmpfr sfsmisc tseries]; }; @@ -1071,41 +1096,45 @@ in with self; { Cubist = derive2 { name="Cubist"; version="0.4.2.1"; sha256="0mwis0qjjj7wz4lxb8a0168l4az4523ybhxc0jygx8qrj3azwyph"; depends=[lattice reshape2]; }; CureAuxSP = derive2 { name="CureAuxSP"; version="0.0.1"; sha256="1aay2hhciq6f79dz5cnqsfrvw6hlfidw4gvy7hyrnbqqlnqjwyr2"; depends=[lars MASS mvtnorm survival TCGAbiolinks]; }; CureDepCens = derive2 { name="CureDepCens"; version="0.1.0"; sha256="1i11yvh19zvv220d3jhnidjxq494wc3jg5054zq1pr09sxh2jnqn"; depends=[dlm Formula matrixStats rootSolve survival]; }; + CurricularAnalytics = derive2 { name="CurricularAnalytics"; version="1.0.0"; sha256="17hgdiwbr2pp5f51091l61qjl4rdl3qp5d417zxj4024sh93l21m"; depends=[dplyr igraph visNetwork]; }; CustomDerivative = derive2 { name="CustomDerivative"; version="0.1.1"; sha256="05jfv968mnbamzspvdd51pbwz5xpn3jhj3pwq2piwk18br824rn2"; depends=[R6]; }; CustomerScoringMetrics = derive2 { name="CustomerScoringMetrics"; version="1.0.0"; sha256="166v0hbxy4xgbfqh7sx6zsrv4pghqpimx5xry3h2qwynnvr4ng1a"; depends=[]; }; CustosAscensor = derive2 { name="CustosAscensor"; version="0.1.0"; sha256="1axyhwf9rc9dvrrcrpmx69kp49nwb0an7csn9qbjmx9jwwav11l5"; depends=[]; }; CutpointsOEHR = derive2 { name="CutpointsOEHR"; version="0.1.2"; sha256="0r772zb7g10akcfnf2hnyvpvba4px9pgslyns7drmijdsh0ncnvj"; depends=[survival]; }; - Cyclops = derive2 { name="Cyclops"; version="3.4.0"; sha256="0rys8fcz96zy0kx2b3k0j48nj0ysr6pcvya9grb8c3wj9s12m752"; depends=[Andromeda bit64 dplyr Matrix Rcpp RcppEigen rlang survival]; }; + CvmortalityMult = derive2 { name="CvmortalityMult"; version="1.0.2"; sha256="0m11pzmhw7g25x4dmjakc5i66x5vvn086j6vj3r0bvyxiyyvi3gj"; depends=[forecast gnm sf StMoMo tmap]; }; + Cyclops = derive2 { name="Cyclops"; version="3.4.1"; sha256="1zz6jgzsjswzafya43fabqcgfhwn65sk8lx023hhn33vw844sv5p"; depends=[Andromeda bit64 dplyr Matrix Rcpp RcppEigen RcppParallel rlang survival]; }; CytOpT = derive2 { name="CytOpT"; version="0.9.4"; sha256="008qm2kzclp0sy4ys7y0dsc894qrn7mazz9216w97rs2sn7kcrzx"; depends=[ggplot2 MetBrewer patchwork reshape2 reticulate testthat]; }; CytoSimplex = derive2 { name="CytoSimplex"; version="0.1.1"; sha256="0zknsizsh860hyij5zxpm3izfsiwnp7mshrrnk4fmxsjv9fcxahr"; depends=[ggplot2 Matrix plot3D Rcpp RcppArmadillo rlang]; }; CytobankAPI = derive2 { name="CytobankAPI"; version="2.2.1"; sha256="0zhvxgqlzwv98b6ccl33x6jp71a14ysdmcc5a3v0d97r8haq1g3v"; depends=[aws_s3 curl httr jose jsonlite uuid]; }; D2MCS = derive2 { name="D2MCS"; version="1.0.1"; sha256="0rjfjnh8gcbm83cwqk1yjrjv6jsrarr53c629bkg9zw7s5sm35nz"; depends=[caret devtools dplyr FSelector ggplot2 ggrepel gridExtra infotheo mccr mltools ModelMetrics questionr R6 recipes tictoc varhandle]; }; + D3GB = derive2 { name="D3GB"; version="2.0"; sha256="0g86nyfrhqbnlvls2l5ppi2zlij2wpg6zq83qrllzzrh28qx0rjk"; depends=[base64enc DBI RSQLite]; }; D3mirt = derive2 { name="D3mirt"; version="1.1.0"; sha256="1a7c2q1rm8yhdsszh4lg6nca8sfyyvba3v4gchdjll7660grpyr7"; depends=[mirt rgl]; }; D3partitionR = derive2 { name="D3partitionR"; version="0.5.0"; sha256="10067rdgbpjzgw2wiq75kdd0gd7bl41hp16sxc0k2p72ybqfpw03"; depends=[data_table functional htmlwidgets magrittr RColorBrewer titanic]; }; D4TAlink_light = derive2 { name="D4TAlink.light"; version="2.1.14"; sha256="1cpvi5jzlyvwygyzv4smi3qcr3gx85s7bfjspsfkz9011aqb1aci"; depends=[jsonlite openssl rmarkdown]; }; DA = derive2 { name="DA"; version="1.2.0"; sha256="0bcx6lh93yl1cawrbrkqx7dypypvfnf27nlxf9vkz16n1hy50xnl"; depends=[adegenet kernlab klaR lfda MASS plotly rARPACK]; }; - DAAG = derive2 { name="DAAG"; version="1.25.4"; sha256="1gia0xpdy55f23s6b3w4nfdmavgj9xzk9zc3p64lj4arycpnq4mn"; depends=[lattice latticeExtra Rdpack]; }; + DAAG = derive2 { name="DAAG"; version="1.25.6"; sha256="0vm4r1ds2xxxf4vml6mrb5alnkr72a08nby88h3qk7xalny28xkf"; depends=[lattice latticeExtra Rdpack]; }; DAAGbio = derive2 { name="DAAGbio"; version="0.63-4"; sha256="03lkq84x3skhvcrbs7235jlrhcnszk0pgziik4z93gy1qngrshn2"; depends=[limma]; }; DACF = derive2 { name="DACF"; version="1.0.0"; sha256="0hv7c9lk6ivj4iz953yn11iy5p611q4si4ghn9d5a9i229s5hig8"; depends=[]; }; DAIME = derive2 { name="DAIME"; version="2.1.3"; sha256="099pbzgryz9lxhcqlrywcv8zl5af4ir5dyyqvgc16xi5bddxk7ld"; depends=[]; }; DAISIE = derive2 { name="DAISIE"; version="4.4.1"; sha256="0f1ym3k49m2wdilsg7vwsb7m4ccdg87pnaksmbqv9smcxn5v8rn2"; depends=[BH DDD deSolve doParallel foreach magrittr Matrix pracma Rcpp RcppEigen subplex tensor testit]; }; - DAISIEprep = derive2 { name="DAISIEprep"; version="0.3.2"; sha256="1072j28rwkzki8slz4h8db0wkzbcprbrmm7c33jy19s3qk5h644a"; depends=[ape castor DAISIE ggplot2 ggtree phylobase rlang scales tibble]; }; + DAISIEprep = derive2 { name="DAISIEprep"; version="0.4.0"; sha256="0ch3mc725lip67fpbk405rv3bai44w13vvjlspv8y6jzmb5jg6bp"; depends=[ape castor DAISIE ggplot2 ggtree phylobase rlang scales tibble]; }; DAKS = derive2 { name="DAKS"; version="2.1-3"; sha256="0vmpwxvksnmyq40faimbgpj0y3zbk519986n38ipwdfzllcg0zs4"; depends=[relations sets]; }; DALEX = derive2 { name="DALEX"; version="2.4.3"; sha256="08cd5nhgd6vaazcqq985kwivg99v6ily4idhgkpz8l9ffl3lavm0"; depends=[ggplot2 iBreakDown ingredients]; }; DALEXtra = derive2 { name="DALEXtra"; version="2.3.0"; sha256="1yxsk6cmqrhc7aw62vx5pr2g18lh32j5x73jbfxv4k0ia66mmwqf"; depends=[DALEX ggplot2]; }; DALSM = derive2 { name="DALSM"; version="0.9.1"; sha256="00v3h9np8nfhiyiz6r4bs5gzqqw3qfx275ab1byvjsr42zx11qpr"; depends=[cubicBsplines MASS plyr]; }; DALY = derive2 { name="DALY"; version="1.5.0"; sha256="1v7ld01xcn5jiygl1c3xhd5h71ip90lks87fs9gmpnivp8jz5cr5"; depends=[]; }; DAMOCLES = derive2 { name="DAMOCLES"; version="2.3"; sha256="0pk9gq82qa18fl7zp74d47bgy8lhj9rkvfq23w8844nz9kn58s1f"; depends=[ape caper DDD deSolve expm Hmisc Matrix matrixStats picante]; }; - DAP = derive2 { name="DAP"; version="1.0"; sha256="0zzb05yxfaqp6qnr979q20rqy8sl5l825mxs0x9366qr7mz5k5ws"; depends=[MASS]; }; DATAstudio = derive2 { name="DATAstudio"; version="1.1"; sha256="1gwm53pgab5qn0p46bxs0790n7bbfl7b66i84xsa6bb4zdw5jdzb"; depends=[data_table ggplot2 scales]; }; DArand = derive2 { name="DArand"; version="0.0.1.2"; sha256="1pwd5srrjy8mhs40k6g6x5j3vk9cr5hylk8sdyiiqalpq490nzqy"; depends=[]; }; DBEST = derive2 { name="DBEST"; version="1.8"; sha256="1a598g02hpfgv572gchllqkppynnsp4lx764jg0g66w3b66k0kdy"; depends=[zoo]; }; DBHC = derive2 { name="DBHC"; version="0.0.3"; sha256="0r9c2vjnrahi3kbg7gz3z9k1i8vdqc44rc6nq7xk1j2xs1s6wsxp"; depends=[ggplot2 reshape2 seqHMM TraMineR]; }; - DBI = derive2 { name="DBI"; version="1.2.2"; sha256="10d7sl9nk1gkkbinmvplyp2hg9zgxgs03llamrvbf4a5cnrs0mcd"; depends=[]; }; - DBItest = derive2 { name="DBItest"; version="1.8.0"; sha256="1k9ww5kcy2y3cxqi9pp00j0dfa82pfbph2gz5z42nykcam6w4dfx"; depends=[blob callr DBI desc hms lubridate magrittr nanoarrow palmerpenguins rlang testthat vctrs withr]; }; + DBI = derive2 { name="DBI"; version="1.2.3"; sha256="1gid1mfzq1j3n5fsnpzdb50p2m73z92s6njp0sgr503aaskhhryg"; depends=[]; }; + DBItest = derive2 { name="DBItest"; version="1.8.1"; sha256="0vj7989s9qip3mxjzffrm7prh0xxpp467y9m4ls7dz7m3b7inpxl"; depends=[blob callr DBI desc hms lubridate magrittr nanoarrow palmerpenguins rlang testthat withr]; }; DBModelSelect = derive2 { name="DBModelSelect"; version="0.2.0"; sha256="1cbnypvcglbvlxdpr95yd65qfd56fhfx14gd0mr71jkkqhgmj0pk"; depends=[]; }; DBNMFrank = derive2 { name="DBNMFrank"; version="0.1.0"; sha256="1snnyc9dvlkxydx3n6mims1avbibkkmaf5z440s28ibf9a9l91wj"; depends=[NMF pmledecon]; }; DBR = derive2 { name="DBR"; version="1.4.1"; sha256="1gs9d1qmv4mcmryzzvmwbz6ycinhnxnkiv56l31mbqy50qjn9bi4"; depends=[coda MfUSampler]; }; + DBTC = derive2 { name="DBTC"; version="0.1.0"; sha256="1w4sm78nvzmc7hjdpjxsj4qncwnymdqni5jkllircglsjimps75y"; depends=[dada2 ggplot2 pbapply plyr ShortRead taxonomizr]; }; + DBTCShiny = derive2 { name="DBTCShiny"; version="0.1.2"; sha256="0rk9f4wbpmibydbmq17bjfgdznpl67xfd5f1srkpnai459c5ni6y"; depends=[DBTC DT ggplot2 leaflet leaflet_extras magrittr shiny shinycssloaders shinydashboard shinyFiles shinyjs shinyWidgets]; }; DBfit = derive2 { name="DBfit"; version="2.0"; sha256="1b5fy4xya5k31937ccjsq1gj9y39lh1vb48jfc0sr56isrx0c496"; depends=[Rfit]; }; DBpower = derive2 { name="DBpower"; version="0.1.0"; sha256="04wwhzlc9g6il478ax5yvh74bbb6hs29jyslkiz3k1hi25hlpkrn"; depends=[combinat dplyr GBJ kit magrittr mvtnorm]; }; DCCA = derive2 { name="DCCA"; version="0.1.1"; sha256="06xdx79r7dr14dlk5vgcyd8ar4sc72imlyk66bnia1kvlynvdy69"; depends=[checkmate]; }; @@ -1148,18 +1177,19 @@ in with self; { DFBA = derive2 { name="DFBA"; version="0.1.0"; sha256="12ywksp6zb2xkxvpmnvjpan9wllfzhngvwnsw6813z11jdhrhnpr"; depends=[]; }; DFD = derive2 { name="DFD"; version="0.1.0"; sha256="1msyfzcxrqz9wq675ml00sigsyg94wl36yw4759fkr1q99iggxcc"; depends=[gprofiler2 signatureSearch signatureSearchData stringr]; }; DFIT = derive2 { name="DFIT"; version="1.1"; sha256="1220ax93b9xwmq1crgl1fnf63gk72jqbra5b5q25wn6ynv1kilkx"; depends=[ggplot2 mirt msm mvtnorm simex]; }; - DGCA = derive2 { name="DGCA"; version="1.0.3"; sha256="15n6nlnb20xzn4swcclyarfq7pq7rwmm2n0rv7m2q9jkxr9vp4w0"; depends=[matrixStats WGCNA]; }; DGEAR = derive2 { name="DGEAR"; version="0.1.3"; sha256="0pnfaamrqban478vxcr4cjklxqxh9kmxzd724jwq8a1xfgscs8pw"; depends=[DescTools]; }; DGEobj = derive2 { name="DGEobj"; version="1.1.2"; sha256="00ndl6ckbr3f6pg9mgcygv1pq7j8gc7g8f54lirm624hiswsppn3"; depends=[assertthat magrittr stringr]; }; DGEobj_utils = derive2 { name="DGEobj.utils"; version="1.0.6"; sha256="01pbyz62vayism9bk6scx97yxwfmsss2af39grq46rilrcgrck3k"; depends=[assertthat DGEobj dplyr stringr]; }; DGLMExtPois = derive2 { name="DGLMExtPois"; version="0.2.3"; sha256="0bbf7cyrnn1ghvhbnv54pv6325l8v8fy1bayl4b6qgs84xd959p4"; depends=[COMPoissonReg nloptr]; }; DGM = derive2 { name="DGM"; version="1.7.4"; sha256="1f59spd4bwx4d1gbjaizjxccaslw1fvf8pxa9nrxi07j6kq9mg0h"; depends=[coin data_table ggplot2 Rcpp RcppArmadillo reshape2]; }; + DGP4LCF = derive2 { name="DGP4LCF"; version="1.0.0"; sha256="1v8wh52wcxs4adp1h9xplj5vych867scjrw32pqdczmiawi3q9d5"; depends=[coda combinat corrplot factor_switching GPFDA mvtnorm pheatmap Rcpp RcppArmadillo]; }; DHARMa = derive2 { name="DHARMa"; version="0.4.6"; sha256="0wsb59w6z8mwag2wfiqs8237sk5rf2w7z7araxa6pzslsdf3vz9j"; depends=[ape gap lme4 lmtest Matrix qgam]; }; DHBins = derive2 { name="DHBins"; version="1.1"; sha256="1g69acac7pxw8x0d9czyds7xljhbv9d686c99a3y8b4vh7dnx62s"; depends=[ggplot2]; }; DHS_rates = derive2 { name="DHS.rates"; version="0.9.2"; sha256="1j4jgwi5skjr4h8gyphkfjxhx80f0x6bhqb81711bhq5zp3bl59l"; depends=[crayon dplyr haven matrixStats reshape rlang survey]; }; DICOMread = derive2 { name="DICOMread"; version="0.0.0.3"; sha256="1wrgx5b9w476g8s3jmccc027xdqbmcmnlhwf02g6j213rgy87p73"; depends=[matlabr]; }; - DIDmultiplegt = derive2 { name="DIDmultiplegt"; version="0.1.3"; sha256="0msjpxh7ic8ail7i85g972c0d49m588wkch8qzrpq27xfhxvkxsd"; depends=[assertthat dplyr fixest plotrix sampling stringr wooldridge]; }; - DIDmultiplegtDYN = derive2 { name="DIDmultiplegtDYN"; version="1.0.5"; sha256="1ilxq75cl8f7r73zvf1s2f3lnkh83w9vbp0rz28083xyls9jb18v"; depends=[car data_table dplyr ggplot2 haven lmtest magrittr matlib plm rlang sandwich xlsx]; }; + DIDmultiplegt = derive2 { name="DIDmultiplegt"; version="0.1.4"; sha256="07rky436q6bq9ag6ix5r4k7i4ahbifx89c2dv9isag634kva6pvm"; depends=[assertthat dplyr fixest plotrix sampling stringr wooldridge]; }; + DIDmultiplegtDYN = derive2 { name="DIDmultiplegtDYN"; version="1.0.11"; sha256="0i19i65hacrpfr8zn644a0viparig4np07fs91f7xs6gh7z1yv4c"; depends=[car cowplot data_table dplyr ggplot2 haven lmtest magrittr matlib plm rlang rnames sandwich xlsx]; }; + DIFM = derive2 { name="DIFM"; version="1.0"; sha256="126yn0kj6znpigxg7hsmpn67149mgl1nzv6zp772cwd8pdwpyklw"; depends=[gridExtra LaplacesDemon Matrix Rcpp RcppArmadillo sp spdep]; }; DIFboost = derive2 { name="DIFboost"; version="0.3"; sha256="07x31ccy2l0drv1356g1v4jw71i7zqb3d0v856gsd3kpqhclpvx0"; depends=[mboost penalized stabs]; }; DIFlasso = derive2 { name="DIFlasso"; version="1.0-4"; sha256="13ls5018l790cdr26431li4gi9zw03ilypszfqglg4hj485h7dyw"; depends=[grplasso miscTools penalized]; }; DIFplus = derive2 { name="DIFplus"; version="1.1"; sha256="1k03lr437gx5y762z3h40hz9kcl4m8xgrndxvbyvsgmn2h6pbwsd"; depends=[plyr TestDataImputation]; }; @@ -1174,7 +1204,7 @@ in with self; { DIZutils = derive2 { name="DIZutils"; version="0.1.2"; sha256="1kra2b1qbbs6yf5aqlianszqbybni4iqzks0gxg5hdmdzphzb0hb"; depends=[data_table DBI DIZtools Hmisc psych RJDBC RJSONIO RPostgres xml2]; }; DIconvex = derive2 { name="DIconvex"; version="1.0.0"; sha256="0bnrq9nmryshir6ll43nz20aaqmmw0zjvfml72cpwbvrma8a3qmz"; depends=[lpSolveAPI]; }; DImodels = derive2 { name="DImodels"; version="1.3.2"; sha256="1ykdjqbli32awx6fwyff0l522dclhfyjp83svsjrfnm0517rlg4w"; depends=[ggplot2 hnp multcomp rootSolve]; }; - DImodelsMulti = derive2 { name="DImodelsMulti"; version="1.0.1"; sha256="1l15irl8nrhq0x0bhz5rh225lha9pmqmvl0p4mr534cg36abs7gm"; depends=[DImodels dplyr knitr Matrix nlme plyr reshape2]; }; + DImodelsMulti = derive2 { name="DImodelsMulti"; version="1.1.1"; sha256="1av5kfvshy05xqipp4qa5fhj4yd55wfpznx91l2fgdklxbnjr0v4"; depends=[DImodels dplyr knitr Matrix nlme plyr reshape2]; }; DImodelsVis = derive2 { name="DImodelsVis"; version="1.0.1"; sha256="1j224j3xj1scf1smy2zk0dwv3calkx3jzpn989w9hjck96x657n5"; depends=[cli DImodels dplyr forcats ggfortify ggplot2 ggtext glue insight metR PieGlyph plotwidgets rlang scales tidyr]; }; DIscBIO = derive2 { name="DIscBIO"; version="1.2.2"; sha256="0zr1lpfqn8q3xhh27aa59j5xq70fxhzkwqaqfi34zfsiqzb7cy6a"; depends=[AnnotationDbi cluster fpc ggplot2 httr igraph impute mclust NetIndices org_Hs_eg_db png RColorBrewer rpart rpart_plot RWeka SingleCellExperiment statmod TSCAN tsne vegan withr]; }; DJL = derive2 { name="DJL"; version="3.9"; sha256="0q82b35ln0ligxgnk726bn5cynh6sd529hk6v3prrzbvdnsrqxcg"; depends=[car lpSolveAPI]; }; @@ -1184,7 +1214,6 @@ in with self; { DLMtool = derive2 { name="DLMtool"; version="6.0.6"; sha256="1lhskk4022vzvmwki08jkwpz3scirbdr0imkpzb9dqfhvmsdyafx"; depends=[dplyr ggplot2 MSEtool Rcpp RcppEigen TMB]; }; DLPCA = derive2 { name="DLPCA"; version="0.0.5"; sha256="1fjpkn32rx8m18k6pr2cf180wqr01f9kviqibwsghnkrhbzcgpiy"; depends=[]; }; DMCfun = derive2 { name="DMCfun"; version="3.5.4"; sha256="0kw0hzg5hwj76yz02ws62dmji7ggjm5isnh4blfhw55fsn7b6aic"; depends=[BH DEoptim dplyr pbapply Rcpp tidyr]; }; - DMLLZU = derive2 { name="DMLLZU"; version="0.1.1"; sha256="0ck87abcd5gkq69q1g5g0yshfhx94m3vgayvxgzgnkidn9mivx22"; depends=[caret gbm ISLR lmtest nnet randomForest rlang sandwich]; }; DMMF = derive2 { name="DMMF"; version="0.5.2.0"; sha256="0bda65253q45m9bj923zylafnlwnxwyyk730pjqynz11z8vyibj6"; depends=[raster]; }; DMQ = derive2 { name="DMQ"; version="0.1.2"; sha256="1ygaqznvblzr3r1x7zl1l8sazh3sbs1zgagawwlwl42g8sdl57az"; depends=[DEoptim MASS Rcpp RcppArmadillo Rsolnp]; }; DMRnet = derive2 { name="DMRnet"; version="0.4.0"; sha256="11niqsnkyrcwsirrsjp7gkdcjgdlddah92i5mndw4idadjg0cnrc"; depends=[glmnet grpreg hclust1d]; }; @@ -1192,13 +1221,13 @@ in with self; { DMtest = derive2 { name="DMtest"; version="1.0.0"; sha256="1bziiyv63lcbmd79fykjj6b63igbbw0pwiq37k7q9l5vij6jfcj9"; depends=[doParallel foreach matrixStats]; }; DMwR2 = derive2 { name="DMwR2"; version="0.0.2"; sha256="1vzfbz2k05j8r2hpig3d2grb99rnnh2s1sviii3prcyqicxfh0i9"; depends=[class DBI dplyr quantmod readr rpart xts zoo]; }; DNAmixturesLite = derive2 { name="DNAmixturesLite"; version="0.0-1"; sha256="14f373an89ra7v2q3mlc4s7svriydzs7jp8zp3arsbg4ali1g037"; depends=[gRaven gRbase Matrix numDeriv Rsolnp]; }; + DNAmotif = derive2 { name="DNAmotif"; version="0.1.0"; sha256="0w7fzvssnvymrpx3444svawkags6bvcbajasvk5n0fvyyx1i1jhz"; depends=[Biostrings Rcpp]; }; DNAseqtest = derive2 { name="DNAseqtest"; version="1.0"; sha256="1mpmf40vrpw8m75rlqchsnyrz12pgg5bkz7wfca5yy5sbbiwk5pf"; depends=[]; }; DNAtools = derive2 { name="DNAtools"; version="0.2-4"; sha256="1xcpp5jw5xq6a6ccq8jsd4d7ailv3iv8k7b1bbz531vhy9im2dzs"; depends=[multicool Rcpp RcppParallel RcppProgress Rsolnp]; }; DNH4 = derive2 { name="DNH4"; version="0.1.12"; sha256="0g3ibacsbsk34b6411j3n3q9dxqq1iqdnisppmmq7s2bp94ab771"; depends=[httr rvest tibble tidyr]; }; DNLC = derive2 { name="DNLC"; version="1.0.0"; sha256="05410xgpfjsydjmnzry454qcjpws9vhh252q2xq7l0scdj87ly00"; depends=[caTools fdrtool GOstats igraph locfdr mvtnorm spdep]; }; DNMF = derive2 { name="DNMF"; version="1.4.2"; sha256="10zzbi0jywlnq4hxqb0dh7xrn8gj75asd4yc1mcl2dbjpi68sn56"; depends=[doParallel foreach gplots Matrix]; }; DNetFinder = derive2 { name="DNetFinder"; version="1.1"; sha256="1hd3yx3f71rwxn2iqjk7v3vwb6p3z20fi09csnhjkq5l3wk4bkp9"; depends=[flare]; }; - DOBAD = derive2 { name="DOBAD"; version="1.0.6"; sha256="0ifrrfm4yp1416z58qgnak042rgj1xvqby2vvzgrv19z6b3250p3"; depends=[lattice Matrix numDeriv]; }; DOEM = derive2 { name="DOEM"; version="0.0.0.1"; sha256="0xfc4wzbh7gp4c8y7141kyycjxy5avjc8wwxzqyvf70l2if7x4id"; depends=[]; }; DOPE = derive2 { name="DOPE"; version="2.1.0"; sha256="1ccg0sgxvv4c9522f2wynp9j37cnlf4gdaymxgi1jxdlikm3ls5r"; depends=[dplyr magrittr stringr tibble tidytext]; }; DOS = derive2 { name="DOS"; version="1.0.0"; sha256="0vvkwn4wfvspbk74nb6124hdx9158h6yfksib14xqq7rx7c97ad4"; depends=[MASS]; }; @@ -1212,17 +1241,18 @@ in with self; { DPP = derive2 { name="DPP"; version="0.1.2"; sha256="1qalcm4gwh03qpy07d0p323ccq8xmk04v6z30g7wg6ic613bqg7m"; depends=[coda Rcpp]; }; DPQ = derive2 { name="DPQ"; version="0.5-8"; sha256="0wdhx937dp2lmcqzf64jrbg7a20r6rjvdjrpyzn072r94zn2r4dz"; depends=[sfsmisc]; }; DPQmpfr = derive2 { name="DPQmpfr"; version="0.3-2"; sha256="0inj9i876bx2d9pvbazl0q1x2anc4raknay4y9iqkqskm72pwkvp"; depends=[DPQ gmp Rmpfr sfsmisc]; }; + DPTM = derive2 { name="DPTM"; version="1.3.8"; sha256="01zc74g7pyh9xbb11gisrszzdhxx1902970ka30ivzcwvi81243s"; depends=[BayesianTools coda MASS parabar purrr Rcpp RcppEigen]; }; DPpack = derive2 { name="DPpack"; version="0.1.0"; sha256="1kip6n4pxpk5byjdn5m6l8s5l49dvkh78wn6n85dri0c2snkvs17"; depends=[dplyr e1071 ggplot2 MASS nloptr R6 Rdpack rmutil]; }; DPtree = derive2 { name="DPtree"; version="1.0.1"; sha256="0d7zf695lwkx4gv50f08cbi3p3mjjay0qgrbmvybf9m15i4zmyd7"; depends=[MASS MCMCpack plyr Rdpack]; }; - DQAgui = derive2 { name="DQAgui"; version="0.2.3"; sha256="1wizx8wdqkl5vzk0bmmgzcbih0flp8bvdgy252ybfi5m8x3xczvr"; depends=[data_table daterangepicker DIZtools DIZutils DQAstats DT jsonlite knitr lubridate magrittr parsedate shiny shinyalert shinydashboard shinyFiles shinyjs shinyWidgets waiter]; }; - DQAstats = derive2 { name="DQAstats"; version="0.3.3"; sha256="0k7npkzi5zcf8a2lz0hhdxahmblcqplbzqxh2i92gqssxz06x0x5"; depends=[data_table DIZtools DIZutils future future_apply jsonlite kableExtra knitr magrittr parsedate rmarkdown tinytex]; }; + DQAgui = derive2 { name="DQAgui"; version="0.2.4"; sha256="05qik0zm7ghrn75msrkfi20lxdk9bqjvwwf765ajpfaph5wmmxk5"; depends=[data_table daterangepicker DIZtools DIZutils DQAstats DT jsonlite knitr lubridate magrittr parsedate shiny shinyalert shinydashboard shinyFiles shinyjs shinyWidgets waiter]; }; + DQAstats = derive2 { name="DQAstats"; version="0.3.5"; sha256="0slp3kq2g4djdfxqx40afxcycyncmdxw757pyrm8anfnpxx4rdvz"; depends=[data_table DIZtools DIZutils future future_apply jsonlite kableExtra knitr magrittr parsedate quarto tinytex]; }; DR_SC = derive2 { name="DR.SC"; version="3.4"; sha256="076halm823dlrj95hqq3ibdb645vd2w68mixi36wdnh7ngr7ih1f"; depends=[CompQuadForm cowplot ggplot2 GiRaF irlba MASS Matrix mclust purrr RColorBrewer Rcpp RcppArmadillo S4Vectors Seurat spatstat_geom]; }; DRAYL = derive2 { name="DRAYL"; version="1.0"; sha256="0cf5pyx6nwh8srdylpnmymv3dr67fm6qqpwd1hvj1wmyfc8fznpp"; depends=[cubature pracma RConics rmutil]; }; DRDID = derive2 { name="DRDID"; version="1.0.6"; sha256="1grhnk0b6v5c31497mfr9b4n2fn3flkw40r3lznhxgn2psphpjz7"; depends=[BMisc trust]; }; DRDRtest = derive2 { name="DRDRtest"; version="0.1"; sha256="1vrvwr441w526a80s0r2fwqlllvn05ir8v2152jz2wxrwhnpq1s0"; depends=[KernSmooth SuperLearner]; }; DREGAR = derive2 { name="DREGAR"; version="0.1.3.0"; sha256="15cplshs85r0z659mc7xmj5db7vc95wxs01c34isc22p8z0a287i"; depends=[msgps]; }; DRHotNet = derive2 { name="DRHotNet"; version="2.3"; sha256="0r7lbzmk05k65kgasz3ka1ic4hqdv65yryf2vz5c4x1yrqvsh9sg"; depends=[PBSmapping raster sp spatstat spatstat_geom spatstat_linnet spdep]; }; - DRIP = derive2 { name="DRIP"; version="1.9"; sha256="0zpk80rs2w0yizfyz9hs1npbajyvz883zwbhylipp52wyzzq62m2"; depends=[]; }; + DRIP = derive2 { name="DRIP"; version="2.0"; sha256="18cais2n8kx1hpb66kqpjlvjx750rhgfvx4h4jjixmb8aqnf7p48"; depends=[]; }; DRR = derive2 { name="DRR"; version="0.0.4"; sha256="1y70si1gig4l7jx5jiqsqliyywfsvimkx53x3zh1lc3yj2j6bqwk"; depends=[CVST kernlab Matrix]; }; DRaWR = derive2 { name="DRaWR"; version="1.0.3"; sha256="1pschc911zrcgy6vmh9aylz79qfifxvxrm5gxwah7xv50plpar78"; depends=[Matrix ROCR]; }; DRomics = derive2 { name="DRomics"; version="2.5-2"; sha256="0nzxrsgid7w63ybya389nqn8bqkbp29fiz2g6v3nhk5l2hr001p6"; depends=[DESeq2 ggfortify ggplot2 limma rlang SummarizedExperiment]; }; @@ -1232,7 +1262,7 @@ in with self; { DSAIRM = derive2 { name="DSAIRM"; version="0.9.6"; sha256="0zp5dcfdzrywp252d1dcyvaxn8lygqs7hzxk0v9yzgahrbxnlvw9"; depends=[adaptivetau boot deSolve dplyr ggplot2 gridExtra lhs nloptr plotly rlang shiny XML]; }; DSAM = derive2 { name="DSAM"; version="1.0.2"; sha256="1bm7wicpq372xnwlib18434cid90vy575zc4f4xgsy2vsm8f87ym"; depends=[caret kohonen Matrix pROC xgboost]; }; DSBayes = derive2 { name="DSBayes"; version="2023.1.0"; sha256="0sk5xfs13jxy4n3qgifh75bry1b53mm9gk1x14mpy2vw359cbqx4"; depends=[BB]; }; - DSI = derive2 { name="DSI"; version="1.5.0"; sha256="1q89abff6fypafs7w0jrcyh9prcv3ibwr0bym9zlav0lfdbqwhcq"; depends=[progress R6]; }; + DSI = derive2 { name="DSI"; version="1.6.0"; sha256="0i8035zw2a8d8l9qm4zcm73102k89sifma3pdk3q6mdm1iqgxjxg"; depends=[progress R6]; }; DSL = derive2 { name="DSL"; version="0.1-7"; sha256="05wj3zypr2kqfbka930qnwnk2r43pqi13pbs5n6lm8vdq4zjblw4"; depends=[]; }; DSLite = derive2 { name="DSLite"; version="1.4.0"; sha256="1xc9igwsxwiirg40br1qckai0lzhijfnpdrxg94r38hngb7r5cy2"; depends=[DSI R6 rly]; }; DSMolgenisArmadillo = derive2 { name="DSMolgenisArmadillo"; version="2.0.5"; sha256="0bz0gkymd49sswwkj9hq9b6d0dcny74r70fsbpr2s189j5kx98ns"; depends=[base64enc DSI httr MolgenisAuth stringr urltools]; }; @@ -1242,11 +1272,11 @@ in with self; { DSWE = derive2 { name="DSWE"; version="1.8.2"; sha256="0xbhbiiq0mhqspxlgzlnrq2zm3gnb8n4rj285rdgq4cbpmfrly6l"; depends=[dplyr e1071 FNN gss KernSmooth matrixStats mixtools Rcpp RcppArmadillo xgboost]; }; DSjobtracker = derive2 { name="DSjobtracker"; version="2.0.0"; sha256="09n7gxks3j2gx0yyzdnpxa6ncg2hv48v503z1d3qk3fwvcd6r0s1"; depends=[]; }; DSpoty = derive2 { name="DSpoty"; version="0.1.0"; sha256="18z8gk3zj7k2szxg9579qy5klrqjw6zsk5x9jmwrv4qhb98fyji6"; depends=[dplyr httr purrr stringr]; }; - DT = derive2 { name="DT"; version="0.32"; sha256="0nvj2bc441b9h13085fa7q281f86lgx4k0d8lr64xgdpbmbvkl21"; depends=[crosstalk htmltools htmlwidgets httpuv jquerylib jsonlite magrittr promises]; }; - DTAT = derive2 { name="DTAT"; version="0.3-6"; sha256="0ll11763c03xll02727jwm637vbq438vivr88f45nbwrpsk9nb34"; depends=[data_table dplyr Hmisc jsonlite km_ci pomp r2d3 shiny survival]; }; + DT = derive2 { name="DT"; version="0.33"; sha256="1f17gdqjk1aj7vwjvv3363k8lnsvc6ssh4s3gy1prnz33kdxlig1"; depends=[crosstalk htmltools htmlwidgets httpuv jquerylib jsonlite magrittr promises]; }; + DTAT = derive2 { name="DTAT"; version="0.3-7"; sha256="0rh09bdygqwzdlx0girs2ir5dy3jd3r2m4xia46njxvh3jld5vsg"; depends=[data_table dplyr Hmisc jsonlite km_ci pomp r2d3 shiny survival]; }; DTAXG = derive2 { name="DTAXG"; version="0.1.0"; sha256="1jxa0ix0z35i0xdnjl698j8iqjmp6nz8ckah9bap5ay9rkq0xd7f"; depends=[]; }; DTAplots = derive2 { name="DTAplots"; version="1.0.2.5"; sha256="1jwfh8j8ahaj2z19g2f70r652j77q4f0b7j91mggsb0dgk449342"; depends=[]; }; - DTComPair = derive2 { name="DTComPair"; version="1.2.2"; sha256="068ilw98lj4f11gi5fxc8lv6ymi86mahrkhfiagjdrmgcgpcai5w"; depends=[ellipse gee PropCIs]; }; + DTComPair = derive2 { name="DTComPair"; version="1.2.4"; sha256="1p1s0fslylykhmvwc962jcifkbb77ah0lxah596akvxlyrqkjpqk"; depends=[ellipse gee PropCIs]; }; DTDA = derive2 { name="DTDA"; version="3.0.1"; sha256="1x65ahrci7n8v5d6nfz2p3p1x0zjam3a2mvw9m1rpdmfgbalpim7"; depends=[doParallel foreach]; }; DTDA_cif = derive2 { name="DTDA.cif"; version="1.0.2"; sha256="12vkhqxdhir06s35kr76dwns9m02wyicz3mv4r56fqglsfyw77xr"; depends=[doParallel foreach Rcpp]; }; DTDA_ni = derive2 { name="DTDA.ni"; version="1.0.1"; sha256="0lv8k37n271zcmp5mxxc6z03bx283lnc4iz3zz1k2mnfzq2wrahz"; depends=[]; }; @@ -1259,7 +1289,7 @@ in with self; { DTWBI = derive2 { name="DTWBI"; version="1.1"; sha256="06lp4yc5nhacrgic78l014g2w1ibwgs8dp8zrahk5aripaczl25y"; depends=[dtw e1071 entropy lsa rlist]; }; DTWUMI = derive2 { name="DTWUMI"; version="1.0"; sha256="0pybgbfs2yp2ljbs0kra5z70x3llkiwdngp6cadgs3j9rar4vq4q"; depends=[dtw DTWBI e1071 entropy lsa rlist]; }; DTwrappers = derive2 { name="DTwrappers"; version="0.0.2"; sha256="028n1211h9gmv050xfiw347x59gykb6ndvd371fdf53bbkqirqa4"; depends=[data_table]; }; - DTwrappers2 = derive2 { name="DTwrappers2"; version="0.0.2"; sha256="0chc4is8bz39k70jdd4m7rkrj4yg6ccvvr99alj1dh9iwip45g3b"; depends=[data_table DTwrappers]; }; + DTwrappers2 = derive2 { name="DTwrappers2"; version="0.0.3"; sha256="06dz7i5hddqwj307fmkp93v7c4r0nvbi3bi9j4hqx77z7bdy2m8j"; depends=[data_table DTwrappers]; }; DVHmetrics = derive2 { name="DVHmetrics"; version="0.4.2"; sha256="0dxbjqiqhzjrv867qhxmqavzklq0j3qjv4qwdacyrq8faz82vhv7"; depends=[DT ggplot2 KernSmooth reshape2 shiny]; }; DWDLargeR = derive2 { name="DWDLargeR"; version="0.1-0"; sha256="1bxdvgj38xv2xj98njpyhy12b54nccwnc3v92kkpd3i7nwbw48dy"; depends=[Matrix SparseM]; }; DWLS = derive2 { name="DWLS"; version="0.1.0"; sha256="02fd5q91shwjzc6bxqv4m8al7q1vl0mah6niymij37p69wlixy42"; depends=[dplyr e1071 MAST quadprog reshape ROCR Seurat SummarizedExperiment varhandle]; }; @@ -1269,7 +1299,7 @@ in with self; { DYNATE = derive2 { name="DYNATE"; version="0.1"; sha256="172lm5k0hz774a0d2s1hs86q7q50s6n4i4ba8jddy3l5a1gqkpd4"; depends=[data_table dplyr Matrix reshape2 tibble tidyverse]; }; DamiaNN = derive2 { name="DamiaNN"; version="1.0.0"; sha256="09viy1lilz0b29s3myky03981bfnhxjxxgfhdah33cn5x682rbp4"; depends=[caret testthat]; }; DandEFA = derive2 { name="DandEFA"; version="1.6"; sha256="1ir1z76c8742vqdlwv35l4rhr0x7lhghz24g35zn7b30671lypf8"; depends=[gplots polycor]; }; - DanielBiostatistics10th = derive2 { name="DanielBiostatistics10th"; version="0.1.10"; sha256="0adaa1wm079mbikz5dd3f307s356iyckffbm0h3d8jcj335by6pr"; depends=[e1071 ggplot2 ggrepel latex2exp pracma scales]; }; + DanielBiostatistics10th = derive2 { name="DanielBiostatistics10th"; version="0.2.2"; sha256="08wrhzsv8w7ivvxzrmnwic3yzywls6kx1gg1lxsg1s7mqrxzx9w8"; depends=[e1071 pracma]; }; Dark = derive2 { name="Dark"; version="0.9.8"; sha256="1f01aq4g50f07005c8k91cfy9hvl3fmb4yl2924d7512m3884xlv"; depends=[]; }; DarkDiv = derive2 { name="DarkDiv"; version="0.3.0"; sha256="0cjf5rpn4myd21rh04bk2gjk65rjx77mn8mxy4ym704fiycrsj87"; depends=[vegan]; }; Dasst = derive2 { name="Dasst"; version="0.3.4"; sha256="1q18wss5bla3hvhnvmwxpd8lbs6fpdkqf5bfiqva050hsdfq1fk7"; depends=[]; }; @@ -1282,6 +1312,7 @@ in with self; { DataGraph = derive2 { name="DataGraph"; version="1.2.14"; sha256="1vj008c6l1k738kp8f9vmwm6b9jnyjgix389nqgbfq8ia98qgz0k"; depends=[Rcpp]; }; DataLoader = derive2 { name="DataLoader"; version="1.3"; sha256="18mih6mb95v5xjvmqwby2mma74fcxwyqdm5w8j3bhi4iwgfn6d7v"; depends=[plyr rChoiceDialogs readxl xlsx]; }; DataMetProcess = derive2 { name="DataMetProcess"; version="1.0.1"; sha256="1dfi96l3cj1pmj747pznrp5glpibkngzwwcs8y3ihk8p1vqjj7sp"; depends=[dplyr lubridate rlang tidyr]; }; + DataPackageR = derive2 { name="DataPackageR"; version="0.16.0"; sha256="0sm3b5xjj6dx4ckjdzklxr5j386iaiczx6xass4azkjwvj2y5bvb"; depends=[crayon desc digest futile_logger knitr pkgbuild pkgload rmarkdown roxygen2 rprojroot usethis yaml]; }; DataSetsUni = derive2 { name="DataSetsUni"; version="0.1"; sha256="0dbi0jgzh2qxwsid9yp4mdwhrm7mcksx8jvpa91qfnfc26ipdw6n"; depends=[]; }; DataSpaceR = derive2 { name="DataSpaceR"; version="0.7.6"; sha256="1asrslqmk4sjj99x8pb01yfrw57p64zc6klrk2ghz4g44fr9d0pq"; depends=[assertthat curl data_table digest httr jsonlite R6 Rlabkey]; }; DataVisualizations = derive2 { name="DataVisualizations"; version="1.3.2"; sha256="0y8mwgnh3cjapb97a0i4f16nrdhmkd80f6j7z0ivykgfka7jlbqr"; depends=[ggplot2 pracma Rcpp RcppArmadillo reshape2 sp]; }; @@ -1290,25 +1321,26 @@ in with self; { DatabaseConnectorJars = derive2 { name="DatabaseConnectorJars"; version="1.1.0"; sha256="18m6ynj30r5xdy51b3s39h0jcz1k2wgka888skr6ds2233lhqk2w"; depends=[rJava]; }; DatabionicSwarm = derive2 { name="DatabionicSwarm"; version="1.2.1"; sha256="1qdm4na1s4wc8s7j9vp8g8l9lmhqlpzyafkjmm9jzl7wqlgz5ibr"; depends=[deldir GeneralizedUmatrix Rcpp RcppArmadillo RcppParallel]; }; DatastreamDSWS2R = derive2 { name="DatastreamDSWS2R"; version="1.9.7"; sha256="117ahby12i6w93rk41f4cg0v179nk3gr73729v1iclkagizi8hpp"; depends=[dplyr foreach httr jsonlite stringi stringr xts zoo]; }; + DatastreamR = derive2 { name="DatastreamR"; version="2.0.4"; sha256="05dafwxfwyzxxwhyaxfqlhwrgpm4kysnrm1ls3fr4rkqa96z7mwv"; depends=[httr ini jsonlite logger stringr]; }; DateTimeRangePicker = derive2 { name="DateTimeRangePicker"; version="1.1.0"; sha256="1g5gjbwb1h1407bwg5yzrpal2syk5439l73svsjjzs6y55dpixsg"; depends=[htmltools lubridate reactR shiny]; }; Davies = derive2 { name="Davies"; version="1.2-0"; sha256="0n2pqipv0b1w2zjvycms0kyk7h8ps49f5jlzgyxhy9dlyr0ivaml"; depends=[mathjaxr]; }; DeBoinR = derive2 { name="DeBoinR"; version="1.0"; sha256="0brwk24q2wgmn38y1w1rish8dfdbv10xdzmm2k1drdwgsn72hxis"; depends=[dplyr ggplot2 gridExtra KernSmooth pracma]; }; DeCAFS = derive2 { name="DeCAFS"; version="3.3.3"; sha256="0dj32rck6ssyv82d8b75qgsqw319q02iqd3xxazy6251wcjn321i"; depends=[ggplot2 Rcpp robustbase]; }; DeRezende_Ferreira = derive2 { name="DeRezende.Ferreira"; version="0.1.0"; sha256="05c99z3hlwwm0p02cl9z6gjwfxfq2b2qn90l85270bi16llgf42h"; depends=[xts]; }; DebiasInfer = derive2 { name="DebiasInfer"; version="0.2"; sha256="02r1pc5s1vwnvz6cxb2gkc3x4x9vw8nb2zw1z8hyyxp5n8n8d2mf"; depends=[caret CVXR]; }; - DeclareDesign = derive2 { name="DeclareDesign"; version="1.0.8"; sha256="1d6wm21y2h2zx9wnb8f6xi1zg9075y057kl7xln507295c0k5bha"; depends=[estimatr fabricatr generics randomizr rlang]; }; + DeclareDesign = derive2 { name="DeclareDesign"; version="1.0.10"; sha256="0f1c1zkg4cd980b6fgh7dy4vfmwnacy3r98cwmwz99fkg7gcjvnl"; depends=[estimatr fabricatr generics randomizr rlang]; }; DecomposeR = derive2 { name="DecomposeR"; version="1.0.6"; sha256="0f5bagmn0s15qhw0c7fiv96r2ih365fak1rz3pxfnaqmm20l2j8i"; depends=[colorRamps dplyr hexbin StratigrapheR tictoc usethis]; }; DecorateR = derive2 { name="DecorateR"; version="0.1.2"; sha256="1za2qvdq96f75rmnm421xmq8s01ny4666ghv14i72iy3s4ml2hq9"; depends=[rJava RWeka RWekajars]; }; Deducer = derive2 { name="Deducer"; version="0.7-9"; sha256="14kakyf28i654pndlswjzp6h3h7szpznrg6xznqg150mmn0bs3s6"; depends=[car e1071 effects foreign ggplot2 JGR MASS multcomp plyr rJava scales]; }; DeductiveR = derive2 { name="DeductiveR"; version="1.0.0"; sha256="0bx1ad2gw0pf03z0im31mzaa26jxwws6fkbcj319kd8b4s4wp92y"; depends=[dplyr ggplot2 moments reshape2]; }; - Delaporte = derive2 { name="Delaporte"; version="8.3.0"; sha256="1g499xrb3hhd9xrzbxm1d911hm06mfn119xxmcr6f47vsz15ksvy"; depends=[]; }; + Delaporte = derive2 { name="Delaporte"; version="8.4.0"; sha256="1jqz2qxig35rhmwvazmsl3a081dylfq2jfz3bjpj61y4c55mnwar"; depends=[]; }; DelayedEffect_Design = derive2 { name="DelayedEffect.Design"; version="1.1.3"; sha256="0iplpnhxzipvyk89dn13hi0pw1yqfbi8dm4dp2xmvn3avk76pjgs"; depends=[]; }; Delta = derive2 { name="Delta"; version="0.2.0.3"; sha256="0bi9qca4ky481zycp8r7ihvqfjkpvi7hb9wrjsw9avawqa6ck9bv"; depends=[]; }; DeltaMAN = derive2 { name="DeltaMAN"; version="0.5.0"; sha256="08barq4s7m3migjs80207n6l10pr3v2hb1dy72fi59j9x9xgnn4v"; depends=[knitr shiny shinyBS shinyMatrix xtable]; }; DemoDecomp = derive2 { name="DemoDecomp"; version="1.0.1"; sha256="0m24ld8s3ph8qcbkqma5y5k5nv0d0vgb7wz8q20gxnfbj2kbcvjv"; depends=[Rdpack]; }; DemoKin = derive2 { name="DemoKin"; version="1.0.3"; sha256="0ph60ifffg29a88f9qxkx6zvcv8rxl1q5wd39j5zz2fqm3ggz47v"; depends=[data_table dplyr igraph lifecycle magrittr MASS Matrix matrixcalc progress purrr tidyr]; }; DemografixeR = derive2 { name="DemografixeR"; version="0.1.1"; sha256="16qd1wbzizvg86bqkk8fvb53g6h30l5v99cjxpnr43qf0r4drz3j"; depends=[httr jsonlite magrittr]; }; - DemographicTable = derive2 { name="DemographicTable"; version="0.1.6"; sha256="0399k4gbrh4chi9v2bq9f3lggipdjax3lpzf6x4g8agp5927fyr8"; depends=[e1071 flextable xtable]; }; + DemographicTable = derive2 { name="DemographicTable"; version="0.1.8"; sha256="1nsq0hcb5s6garwjnknnab92fn5w5z721m3ai4j91nbwcs08jwqj"; depends=[e1071 flextable xtable]; }; DendSer = derive2 { name="DendSer"; version="1.0.2"; sha256="1naz8sx5ksb3gqhgfsgdsf5377c96za829m7lmbpr7zlzlxg5jyf"; depends=[gclus seriation]; }; DendroSync = derive2 { name="DendroSync"; version="0.1.4"; sha256="0jypfdjcjqv2vd3l52hq696gdni303dw5l0nq9hhngc18v2imqa2"; depends=[ggplot2 gridExtra nlme]; }; DensParcorr = derive2 { name="DensParcorr"; version="1.1"; sha256="1ifkg7cpimf27yhr60rks77r16kmhwa5h10wv7b64sbfncnyzfmj"; depends=[clime gplots]; }; @@ -1338,7 +1370,7 @@ in with self; { DiPALM = derive2 { name="DiPALM"; version="1.2"; sha256="0y6nzf7lkf0znp88r7k0myf5k1c7cqcc2gh5kgzj5q8savhr90ax"; depends=[ggplot2 limma WGCNA]; }; DiPhiSeq = derive2 { name="DiPhiSeq"; version="0.2.0"; sha256="11l2inf99vxz9k292307j8c2b25kc1066svy3vxrfl72rrm4fqa7"; depends=[]; }; DiPs = derive2 { name="DiPs"; version="0.6.4"; sha256="148lbw5f62sm93n5bgn6rswqi3g7j6prdrscz56xalj65d3z1dz5"; depends=[mvnfast plyr rlemon]; }; - DiSCos = derive2 { name="DiSCos"; version="0.0.1"; sha256="00i5hdnrm96plrmv2y55prpkp8sr0dpv0f7srxs2ip9rzxcna3ia"; depends=[CVXR data_table evmix extremeStat ggplot2 MASS pracma Rdpack]; }; + DiSCos = derive2 { name="DiSCos"; version="0.1.0"; sha256="0n74v8r14ny1njbvlbbm4i275x7x923aw2v2wqag6d4q38w5237g"; depends=[CVXR data_table evmix extremeStat ggplot2 MASS pracma Rdpack]; }; DiSSMod = derive2 { name="DiSSMod"; version="1.0.0"; sha256="199yipbc2sx2lsl51rpfyh80bfxaahfd2llqmfsp946gvj7339hv"; depends=[MASS matrixcalc psych sfsmisc]; }; DiagrammeR = derive2 { name="DiagrammeR"; version="1.0.11"; sha256="1py4yii88lsyj8y71d2v0rb9lk5hvhfh0q8n2q4288wqw7bf6wz8"; depends=[cli dplyr glue htmltools htmlwidgets igraph magrittr purrr RColorBrewer readr rlang rstudioapi scales stringr tibble tidyr viridisLite visNetwork]; }; DiagrammeRsvg = derive2 { name="DiagrammeRsvg"; version="0.1"; sha256="0j2cm1mx3zrb2k3pcrb96z2z3kws61gyyjsjjv5rqcb5lzdgi65k"; depends=[V8]; }; @@ -1354,21 +1386,22 @@ in with self; { DiffCorr = derive2 { name="DiffCorr"; version="0.4.3"; sha256="1wzk5lfkrz12xxmyapmq6midb6ld6p624i8qzf299dlfsz5i3n5h"; depends=[fdrtool igraph multtest pcaMethods]; }; DiffNet = derive2 { name="DiffNet"; version="1.0.2"; sha256="1hil8p896vckgwmlr8vqkrwswclwh1hs8gxvk648gpahi1na1ssc"; depends=[assertthat igraph MASS]; }; DiffXTables = derive2 { name="DiffXTables"; version="0.1.3"; sha256="0a0q1fz80jlcrk4rw70yjb8djxgsm5axih45vi4dqpg6n8xlrzw2"; depends=[pander Rdpack]; }; - DirStats = derive2 { name="DirStats"; version="0.1.9"; sha256="0cj3ba2dzy7nvvs98mzj0c37hdn4lhxhrir27bhqfrjnmz13z08w"; depends=[movMF rotasym]; }; + DirStats = derive2 { name="DirStats"; version="0.1.10"; sha256="1l4sxg5vlgnx30rcpwj9iw9kzl79cbwmarbip2n7bp7fpb8wsl3i"; depends=[movMF rotasym]; }; Dire = derive2 { name="Dire"; version="2.2.0"; sha256="140qqpp0vhqw0vmzff58sx51nj21x61z063j4j23nrdrl3ylamcv"; depends=[foreach haven iterators lbfgs MASS Matrix Rcpp RcppArmadillo]; }; DirectEffects = derive2 { name="DirectEffects"; version="0.2.1"; sha256="0cjqp4gam1psd11d6h99pi3ramnaybp6bij86wbgqji2icqlvghg"; depends=[Formula glue sandwich]; }; DirectStandardisation = derive2 { name="DirectStandardisation"; version="1.3"; sha256="1qlfvzlig3a2v78fiq6sbbpxklmjczikxdw57m6mqngzrl9vdl2g"; depends=[]; }; DirectedClustering = derive2 { name="DirectedClustering"; version="0.1.1"; sha256="1shdqz0c5bbgknvfqr3ais26cb5mpywnah3d3584w97sy8v7gxm2"; depends=[igraph]; }; - Directional = derive2 { name="Directional"; version="6.5"; sha256="1cxp34vr9g2y7yn7gkb8m523q3ci3s0ycwn4p9xrp9fk8g6ymhm0"; depends=[bigstatsr doParallel foreach ggplot2 magrittr Rfast Rfast2 rgl Rnanoflann rnaturalearth sf]; }; + Directional = derive2 { name="Directional"; version="6.6"; sha256="0fgwhah78psgd7fhjgk9rw1hyhfx9qbj93bznsjs6dhjkp9wyn4q"; depends=[bigstatsr doParallel foreach ggplot2 magrittr Rfast Rfast2 rgl Rnanoflann rnaturalearth sf]; }; DirichletReg = derive2 { name="DirichletReg"; version="0.7-1"; sha256="1ql5mwb7zb06y9j6inrlngq7c15as4j17wd8kc71fxs0a2jdj7xi"; depends=[Formula maxLik]; }; DisHet = derive2 { name="DisHet"; version="1.0.0"; sha256="056jcs1qpiyadnmlzd0cj4kp0qzkichxi0pdnxypyq1fsqnpvan3"; depends=[gtools matrixStats]; }; DisImpact = derive2 { name="DisImpact"; version="0.0.21"; sha256="1vc2kwcb3cvcdbdg0s5qnjdzn8qa7lv6f86milhxdf609k2zwdkx"; depends=[collapse data_table DBI dplyr duckdb fst glue purrr rlang sets stringr tidyr tidyselect]; }; DisaggregateTS = derive2 { name="DisaggregateTS"; version="2.0.0"; sha256="17d9mvznxysyybmnl5yz0sx15dxxry4vxpafp35s3sdlarg5jv39"; depends=[lars Matrix Rdpack withr zoo]; }; - DiscreteDatasets = derive2 { name="DiscreteDatasets"; version="0.1.0"; sha256="1dbladgcaixsdd9javna0m0xrdi1f114k4vnl3fh508r3k31vj2l"; depends=[checkmate]; }; + DiscreteDatasets = derive2 { name="DiscreteDatasets"; version="0.1.1"; sha256="0jpjky99cfb7h3i244n16llmgkrkbavbmyhz181fxiaiwzs7z66c"; depends=[checkmate]; }; DiscreteFDR = derive2 { name="DiscreteFDR"; version="1.3.7"; sha256="0yph01q0aw7dfv3cmhv6mjb0vcphifzj1z9iddpw9zhkryadj7gg"; depends=[lifecycle Rcpp]; }; DiscreteInverseWeibull = derive2 { name="DiscreteInverseWeibull"; version="1.0.2"; sha256="0vjsvl4m4zccfgizv7mzidbbpzqcm101x448vllcdcrn2xlnkmnq"; depends=[Rsolnp]; }; DiscreteLaplace = derive2 { name="DiscreteLaplace"; version="1.1.1"; sha256="17w4vjvsm7jacvwckjczyah3hglq044r3m6vqdcrg8haz884rav2"; depends=[]; }; DiscreteQvalue = derive2 { name="DiscreteQvalue"; version="1.1"; sha256="1xl6m3sf02v4y26375jn846ixzcxpqim1r6d4j56y8b5c243jg4h"; depends=[]; }; + DiscreteTests = derive2 { name="DiscreteTests"; version="0.1.2"; sha256="1f487mx818qz8bp36lnb1lpcfcia7pzmvcxhh6zh0ak0d6xllc2g"; depends=[checkmate R6]; }; DiscreteWeibull = derive2 { name="DiscreteWeibull"; version="1.1"; sha256="1rg3ax6jryagf5d3h8m44x9wyhr2qff3srfa9zrk6i64p1ahk9lr"; depends=[Rsolnp]; }; DisimForMixed = derive2 { name="DisimForMixed"; version="0.2"; sha256="00mknsalikangr17946877m5fy2jgkgasgl6ng4f2nr44f0q9l6q"; depends=[cluster dplyr]; }; DistPlotter = derive2 { name="DistPlotter"; version="0.0.2"; sha256="0aws4qs6802y42m07ca9m4i0lza282g6kfzx64q652y52md862gk"; depends=[colourpicker dplyr DT extraDistr ggplot2 rio scales shiny shinyalert shinyBS shinyjs shinyWidgets stringi stringr]; }; @@ -1390,7 +1423,7 @@ in with self; { DoseFinding = derive2 { name="DoseFinding"; version="1.1-1"; sha256="052ic1d7qlcvcglzskdv97v7dnbi2lh8xpkbxf9srqn3sgs812n3"; depends=[ggplot2 lattice mvtnorm]; }; DoubleCone = derive2 { name="DoubleCone"; version="1.1"; sha256="1kbvsj93nn2306s6pgqiiznmlcn2nqsgcxinihl613ivczxhzpqg"; depends=[coneproj MASS Matrix]; }; DoubleExpSeq = derive2 { name="DoubleExpSeq"; version="1.1"; sha256="00xpj5xmpgmvp6h76imkmghrnlfk6c50ydvv0jram6m6ix3z8323"; depends=[numDeriv]; }; - DoubleML = derive2 { name="DoubleML"; version="1.0.0"; sha256="159j9iq3kdpa0s6x4acvl8002lgbnw5j4wh9jbr3dqndpixq965l"; depends=[checkmate clusterGeneration data_table mlr3 mlr3learners mlr3misc mlr3tuning mvtnorm R6 readstata13]; }; + DoubleML = derive2 { name="DoubleML"; version="1.0.1"; sha256="0qk7zjpzz0dpzvczssfbp4gbqxazyxn0dsc8h9jnqb3syzdscc27"; depends=[checkmate clusterGeneration data_table mlr3 mlr3learners mlr3misc mlr3tuning mvtnorm R6 readstata13]; }; Dowd = derive2 { name="Dowd"; version="0.12"; sha256="1fgaq22n7gm8pqxdfkiayqgjfqjn7knjjjr1x12jgv77cv08xyjk"; depends=[bootstrap forecast MASS]; }; Dpit = derive2 { name="Dpit"; version="1.0"; sha256="02pnc00sk3bwxmxrg27638x0q62r7nsx2nr14zjjc5q880prdisv"; depends=[fitdistrplus gsl moments VGAM]; }; DrBats = derive2 { name="DrBats"; version="0.1.6"; sha256="1623h8s6y4klq8xmj480ga2wl6n4c2f26v1dwysyvcrk6lnaghdm"; depends=[ade4 coda MASS Matrix rstan sde]; }; @@ -1399,17 +1432,19 @@ in with self; { DramaAnalysis = derive2 { name="DramaAnalysis"; version="3.0.2"; sha256="0nsnwais0r592c50nphfzkr1bbygl67mriwsx7dxbvmpdsswlvl1"; depends=[data_table git2r httr readr reshape2 stringr tokenizers xml2]; }; DriftBurstHypothesis = derive2 { name="DriftBurstHypothesis"; version="0.4.0.1"; sha256="1pmsbv1rl79s520nxj536m8gf7xyfjskj8r88rxmxscbgp8c1xz2"; depends=[Rcpp RcppArmadillo xts zoo]; }; DrillR = derive2 { name="DrillR"; version="0.1"; sha256="0n7pim5kk0wfdjcc67v4vvdb7wyhn5bcgi2a12nbyfyydss7pk1g"; depends=[httr]; }; - DrugExposureDiagnostics = derive2 { name="DrugExposureDiagnostics"; version="1.0.4"; sha256="0maf6rf9hwh5ik2lc5lqvblgmrrrk5k1i67rpmx9d77b0dhc2k9r"; depends=[CDMConnector checkmate dplyr glue magrittr rlang tidyr tidyselect]; }; + DrugExposureDiagnostics = derive2 { name="DrugExposureDiagnostics"; version="1.0.5"; sha256="1yy8wqprvqc0sa7nxw044g5j18vy395zkbfsr8ibdnbd4hzxvgkf"; depends=[CDMConnector checkmate dplyr DrugUtilisation glue magrittr omopgenerics rlang tidyr tidyselect]; }; DrugSim2DR = derive2 { name="DrugSim2DR"; version="0.1.1"; sha256="1sphg3imdyr71amwqzmzzp6h1ai2m6rm87l08mv70i6jlznwf9kr"; depends=[ChemmineR fastmatch igraph pheatmap reshape2 rvest sp tidyr]; }; - DrugUtilisation = derive2 { name="DrugUtilisation"; version="0.5.2"; sha256="1gpp2ccz4bm6x3qif7lzif8ds0cm818gh0fq6fjamvsid7iilcng"; depends=[CDMConnector checkmate cli DBI dbplyr dplyr glue lifecycle lubridate magrittr omopgenerics PatientProfiles purrr RJSONIO rlang tictoc tidyr visOmopResults]; }; + DrugUtilisation = derive2 { name="DrugUtilisation"; version="0.6.1"; sha256="1b89g84xzdq8sc9nf8vc13x97cgbz0764j21gwkzasn693rn38ym"; depends=[CDMConnector checkmate cli DBI dbplyr dplyr glue lifecycle lubridate magrittr omopgenerics PatientProfiles purrr RJSONIO rlang tictoc tidyr visOmopResults]; }; DstarM = derive2 { name="DstarM"; version="0.4.0"; sha256="0wm5kr2pkgbvh9svjq8zq46zn50hwf58rs3y1ybnwcfjc2q75h1s"; depends=[DEoptim ggplot2 Rcpp RcppArmadillo rtdists RWiener]; }; DtD = derive2 { name="DtD"; version="0.2.2"; sha256="1czspjdxjhbfk2df7wk0x3d1ilwrjqw4s4gdc4hq0gjcjqyx0c39"; depends=[checkmate Rcpp RcppArmadillo]; }; + Dtableone = derive2 { name="Dtableone"; version="1.1.0"; sha256="0pv04l4wxf44zva5w96i02g4z8zx3zgjxxjacfg0vh2f7gx4pjnq"; depends=[dplyr epiR irr pROC]; }; Durga = derive2 { name="Durga"; version="2.0"; sha256="0iq29ga1cn5fnnj1b90pprqcldygmy695si0vq4pr8d59q029ah9"; depends=[boot RColorBrewer vipor]; }; + DyMEP = derive2 { name="DyMEP"; version="0.1.2"; sha256="1jy2yrdih4c1c2d04qnx0z6m466djh91i5cpcbr23rbz0rqf2ig9"; depends=[]; }; DySS = derive2 { name="DySS"; version="1.0"; sha256="1aa67m224bhzzg089rhxwqgbmwwq5py8ikix8khwraz5cnjz2f83"; depends=[ggplot2 gridExtra Rcpp RcppArmadillo]; }; Dykstra = derive2 { name="Dykstra"; version="1.0-0"; sha256="1rc1409ky0ysqr3ccq28yhbs94m6d0z2dfa66k4c7irxjvbagwz6"; depends=[]; }; DynClust = derive2 { name="DynClust"; version="3.24"; sha256="0nbbzx0ixblpcbjxx0gp7082nz6nh5vc2l5nzdfq1mqzlq9jy2xn"; depends=[]; }; DynForest = derive2 { name="DynForest"; version="1.1.3"; sha256="0x78gbgzl4dad5g6w27cdfpngsykanv3lz3xffpqndd971wkzhiy"; depends=[cmprsk DescTools doParallel doRNG foreach ggplot2 lcmm pbapply pec prodlim stringr survival zoo]; }; - DynNom = derive2 { name="DynNom"; version="5.0.2"; sha256="1zs8chdw83qjsi5k1m9cvk48swqz3gadycmhk4prxmjzwcl5z4i1"; depends=[BBmisc compare dplyr ggplot2 magrittr plotly prediction rms shiny stargazer survival]; }; + DynNom = derive2 { name="DynNom"; version="5.1"; sha256="0nc1dw5ihqm819na1dd85v4wlpidvp5yk50rrsyp0labm8nkh0qv"; depends=[BBmisc broom compare dplyr ggplot2 magrittr plotly rms shiny stargazer survival]; }; DynTxRegime = derive2 { name="DynTxRegime"; version="4.15"; sha256="18hk5bc6bsdjdl4736sdk896zblyc8l3ipjii4x2jksngcjvszbb"; depends=[dfoptim kernlab modelObj rgenoud]; }; DynaRankR = derive2 { name="DynaRankR"; version="1.1.0"; sha256="1fzicainh1dm016cglm2x6j1i2g5r71vgrj0dnsflbxc5v426sqm"; depends=[dplyr rlang]; }; DynamicGP = derive2 { name="DynamicGP"; version="1.1-9"; sha256="00hf3r39b9xid129kzgdnwdfrwrspxkz7dydgna3c5lrl7670paz"; depends=[lhs]; }; @@ -1419,7 +1454,7 @@ in with self; { E4tools = derive2 { name="E4tools"; version="0.1.1"; sha256="1kmj1fddybjia9ninhcy75kdmq152zjw7s24chpqr5wsblffr3yx"; depends=[accelerometry anytime BBmisc chron data_table DataCombine doParallel doSNOW foreach ggplot2 hms scales signal]; }; EATME = derive2 { name="EATME"; version="0.1.0"; sha256="1bdiyrq1gay8mz3rkq2cwsw0x2b70i31gs79cyhxil2zh8jf25xf"; depends=[qcr]; }; EAinference = derive2 { name="EAinference"; version="0.2.3"; sha256="1kzcfya3z6rf1vqjn72yjymdhrn4dzgmwifh3w6k22cy5jxffzn4"; depends=[hdi limSolve MASS msm mvtnorm Rcpp RcppArmadillo]; }; - EBASE = derive2 { name="EBASE"; version="1.0.1"; sha256="1a0g91nclmmzfcffbgksb2w6yx6kj68f83knah4n7z3whscqsfik"; depends=[dplyr foreach ggplot2 lubridate R2jags rjags tidyr truncnorm zoo]; }; + EBASE = derive2 { name="EBASE"; version="1.0.2"; sha256="0y36xsh639chsrzb3r6kla6mi34klrqb4x05ixhk4kh4jx2rb63i"; depends=[dplyr foreach ggplot2 lubridate R2jags rjags tidyr truncnorm zoo]; }; EBCHS = derive2 { name="EBCHS"; version="0.1.0"; sha256="103k4y105dn8v5yb5xk520404sd7c05cxd9iwh2k2v18kbvg8pdp"; depends=[fda pracma]; }; EBEN = derive2 { name="EBEN"; version="5.1"; sha256="13cvdx2mg1jhymvq49wm2rm1pajsd4ji274r7zaklcwy4lw5bml4"; depends=[]; }; EBMAforecast = derive2 { name="EBMAforecast"; version="1.0.32"; sha256="01pv873d0sl0qzlgmqw4ahg5ym9gdjzbmzqlg593g5l935r3dgi4"; depends=[abind glue gtools Hmisc plyr Rcpp separationplot]; }; @@ -1442,7 +1477,7 @@ in with self; { EDMeasure = derive2 { name="EDMeasure"; version="1.2.0"; sha256="1gyv86vip0a3939dbbwz29xkqzncw24r68fzykdjnv3b995510iv"; depends=[dHSIC energy rBayesianOptimization]; }; EDNE_EQ = derive2 { name="EDNE.EQ"; version="1.0"; sha256="13aflnpznpzjrrdrn0r7v2mch6hjd77s6c3l7mnc2p59vq7mzmpg"; depends=[MASS]; }; EDOIF = derive2 { name="EDOIF"; version="0.1.3"; sha256="1lq4j5axybhv34mdsz0rn5nz9x3rzjf6bczzfzrf75k6pwqxim1w"; depends=[boot distr ellipsis ggplot2 igraph simpleboot]; }; - EDOtrans = derive2 { name="EDOtrans"; version="0.2.2"; sha256="0n397z0nwz1my8d27dl5x61lzl5q1773lgqmxxj0a5a83i8srbx0"; depends=[ABCanalysis opGMMassessment]; }; + EDOtrans = derive2 { name="EDOtrans"; version="0.2.5"; sha256="0qyg9gcpdh9fchn3ylww1cmb4x1zrrapy9n26gqxncc728526gn7"; depends=[ABCanalysis opGMMassessment]; }; EEAaq = derive2 { name="EEAaq"; version="0.0.3"; sha256="0qs6sqiqwl33bjz9k8hlfsqaawq3cc0ygm73pc8h200c5jwdk94n"; depends=[aweek curl dplyr ggplot2 ggpubr gifski gstat htmlwidgets leaflet lubridate mondate raster readr sf stringr tibble tictoc tidyr]; }; EEM = derive2 { name="EEM"; version="1.1.1"; sha256="0w20kakgcpyhfi7fcrss4w67pbaj87hi2scy7g05q3sg2ygac7gj"; depends=[colorRamps ggplot2 R_utils reshape2 sp]; }; EEMDSVR = derive2 { name="EEMDSVR"; version="0.1.0"; sha256="0m28rrw7lg3sx2aviqphsid2rsp7zksd3fcvk7pxfw16z90y7ifd"; depends=[e1071 Rlibeemd]; }; @@ -1450,12 +1485,13 @@ in with self; { EEMDlstm = derive2 { name="EEMDlstm"; version="0.1.0"; sha256="0cilmbk100gym5kaa7fq8bx0cdqa07xk82kxgxjf4k6gyzs39nlh"; depends=[BiocGenerics keras magrittr reticulate Rlibeemd tensorflow TSdeeplearning tsutils]; }; EESPCA = derive2 { name="EESPCA"; version="0.7.0"; sha256="0bj1wi1almj7rb7sad4i47mnfh4y83mbdd1x5clda6nd738adl2b"; depends=[MASS PMA rifle]; }; EFA_MRFA = derive2 { name="EFA.MRFA"; version="1.1.2"; sha256="0p1zkfwjch9y39r7hjccjk7vfbnfwpdak6jfjs1sdpqkjqiw3r86"; depends=[ggplot2 PCovR psych reshape2 scales]; }; - EFA_dimensions = derive2 { name="EFA.dimensions"; version="0.1.8.1"; sha256="0aprc5xzcl7p51qhkzcgh9yr0vb1270h5q9vdwmzlksx554cqcs9"; depends=[EFAtools GPArotation mirt polycor psych]; }; + EFA_dimensions = derive2 { name="EFA.dimensions"; version="0.1.8.4"; sha256="0zc2zby69c70g6qkama27b9lnk5dbrrrpp5w5r2xxk2wfg1lx8nn"; depends=[EFAtools GPArotation mirt polycor psych]; }; EFAtools = derive2 { name="EFAtools"; version="0.4.4"; sha256="1fzkmvadkcd88d81420lw9mhpmxbjymp4jada2c79bxq1h6b3mw2"; depends=[checkmate cli crayon dplyr future future_apply ggplot2 GPArotation lavaan magrittr progress progressr psych Rcpp RcppArmadillo rlang stringr tibble tidyr viridisLite]; }; EFAutilities = derive2 { name="EFAutilities"; version="2.1.3"; sha256="09835x3nk8nnr3ibiddc5hx2l0jylz15fwsy2wjmv6jdrs0j9vsy"; depends=[GPArotation MASS mvtnorm plyr]; }; EFDR = derive2 { name="EFDR"; version="1.3"; sha256="0mjf2r1aa5iyf4b9f50mb50h1rmhwdi3qyh235mihy3pj68195yn"; depends=[copula doParallel dplyr foreach gstat Matrix sp tidyr waveslim]; }; EFS = derive2 { name="EFS"; version="1.0.3"; sha256="1q8cf8dnxpv5s3lr9145y0wjhak4rz18dzah4xfs5qr4c8nlpl54"; depends=[party pROC randomForest ROCR]; }; - EGAnet = derive2 { name="EGAnet"; version="2.0.5"; sha256="14agbk2aggzyaqplfs32rd6rqisgww1b40xsvlacn4ii1dbiq3rf"; depends=[dendextend fungible future future_apply GGally ggplot2 ggpubr glasso GPArotation igraph lavaan Matrix network progressr qgraph semPlot sna]; }; + EGAnet = derive2 { name="EGAnet"; version="2.0.6"; sha256="1mdnbxmpghk95wm3vy3m1yb0w39ym5v15cjznnyg17w7fy48mk3y"; depends=[dendextend fungible future future_apply GGally ggplot2 ggpubr glasso GPArotation igraph lavaan Matrix network progressr qgraph semPlot sna]; }; + EGM = derive2 { name="EGM"; version="0.1.0"; sha256="0malpx9idfhhavlq5j4awdkicz8ww2gqsfrw5kwycbsvymb5bm2b"; depends=[base64enc checkmate data_table fs ggplot2 lifecycle rlang stringr vctrs xml2]; }; EGRET = derive2 { name="EGRET"; version="3.0.9"; sha256="1if22yq5wyfd0sx5b38xw3fbj8qlmbnkikjq77ihxd3pzfjpdl14"; depends=[dataRetrieval fields foreach MASS survival truncnorm]; }; EGRETci = derive2 { name="EGRETci"; version="2.0.4"; sha256="1g01a03smn5yp261cyk3x310m1mcv4bqyh8y123wam9gpa7dxrp6"; depends=[binom EGRET]; }; EGRNi = derive2 { name="EGRNi"; version="0.1.6"; sha256="0wgdhlmnch6gpypqlwd5z56ia03lbbimr4ci9gcfs8f881dh92dy"; depends=[fdrtool gdata MASS readr]; }; @@ -1466,7 +1502,6 @@ in with self; { EKMCMC = derive2 { name="EKMCMC"; version="1.1.2"; sha256="0filw1xikbv55h7xswlqifd30d43b9y3h2m6i0zv8v54y8mmszfg"; depends=[numDeriv]; }; EL = derive2 { name="EL"; version="1.2"; sha256="1ygvb8m33szf2xl6fcvyqhgpj7ppn4kc9wd1fcaq4ppbvv6c17ka"; depends=[]; }; EL2Surv = derive2 { name="EL2Surv"; version="1.1"; sha256="0bn2481rf61qnia468y7k95hhazjaghrv919a2y9ar5wcz5nq2kk"; depends=[survival]; }; - ELCIC = derive2 { name="ELCIC"; version="0.2.1"; sha256="1yflpbnqjcz47jyf3w32x5gra576q2f401p19zy0fz2cyradiggm"; depends=[bindata geepack MASS mvtnorm PoisNor wgeesel]; }; ELISAtools = derive2 { name="ELISAtools"; version="0.1.5"; sha256="18f2adhw85f0hsz5gb6xhi0w2phcq364xy9y1jri6ckzs8g0pny7"; depends=[minpack_lm R2HTML stringi]; }; ELMR = derive2 { name="ELMR"; version="1.0"; sha256="0pd3drv485xbdyfwm28kjpd0nd0zv1khfwzki1gh5p1gz9ndwr2x"; depends=[]; }; ELMSO = derive2 { name="ELMSO"; version="1.0.1"; sha256="14wnrqrbbfb37f3wp91qib28bcanflw3asv1y0v748n36x1xbv3m"; depends=[]; }; @@ -1475,11 +1510,11 @@ in with self; { EM_Fuzzy = derive2 { name="EM.Fuzzy"; version="1.0"; sha256="0sz4zkjn6rdzdqmkq6j24bd4sj91y5lan31bldxdfskgz0jpzhbr"; depends=[DISTRIB FuzzyNumbers]; }; EMAR = derive2 { name="EMAR"; version="1.0.0"; sha256="1i0jmxp1fckqvah6a08pgvn92dwg052bra3vp5wmwakk56cbyqih"; depends=[]; }; EMAS = derive2 { name="EMAS"; version="0.2.2"; sha256="07y15nbym69iwdy9c5gcdalign7g8qw8hkcy1v29z6j2di6qzn84"; depends=[ggplot2 IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 lavaan mediation minfi multilevel qqman]; }; - EMAtools = derive2 { name="EMAtools"; version="0.1.4"; sha256="0gx55ddw7dz1lm599i0gj15dlc3m58a8rf223hiykszb5c8bi372"; depends=[anytime DataCombine ggplot2 lmerTest plyr sjstats]; }; EMCluster = derive2 { name="EMCluster"; version="0.2-15"; sha256="1p8zfavx9waz3n4nkz8f6cd5hlcjb53r4wiwnrll5dx8zpfjj8g2"; depends=[MASS Matrix]; }; EMD = derive2 { name="EMD"; version="1.5.9"; sha256="0lga27nl7c3h02xrbb2hcwlb9dyli340v0hb3vwwzqrhmr0fl806"; depends=[fields locfit]; }; EMDANNhybrid = derive2 { name="EMDANNhybrid"; version="0.2.0"; sha256="17zkag633kh1xkcasvyimvd9w1dmy1hlnrfffb96v7qh35rc8q3n"; depends=[EMD forecast]; }; EMDSVRhybrid = derive2 { name="EMDSVRhybrid"; version="0.2.0"; sha256="1vjr7aslvykbyz8aw2z5aqlqx1v3nv63hym6knygflkkpr9zsr30"; depends=[e1071 EMD]; }; + EMJMCMC = derive2 { name="EMJMCMC"; version="1.5.0"; sha256="0wdqln3sdycml5hf5cgrasfp1llv61zzx45qswsjzynlk5g52qjp"; depends=[BAS biglm bigmemory glmnet hash speedglm stringi withr]; }; EML = derive2 { name="EML"; version="2.0.6.1"; sha256="1k2chfz6qixa6jsikqgilqp8j49mcshn725ck1h77bacfxfhf7za"; depends=[digest dplyr emld jqr jsonlite rmarkdown uuid xml2]; }; EMLI = derive2 { name="EMLI"; version="0.2.0"; sha256="0zwbbxsmkyrgmva5h8l78f181nz5asc7dpdcmajvj2y3yl1rb278"; depends=[]; }; EMMAgeo = derive2 { name="EMMAgeo"; version="0.9.7"; sha256="1wz4zw45xfqbk589cpd188j7619h2ar2czfkisil9x8ksijfixls"; depends=[caTools GPArotation limSolve matrixStats shiny]; }; @@ -1493,7 +1528,7 @@ in with self; { EMSNM = derive2 { name="EMSNM"; version="1.0"; sha256="0rhaadzhq9jfpnwxfqcsb3yz96rqlwkm165k5n5jxzwxpg1rg2n0"; depends=[]; }; EMSS = derive2 { name="EMSS"; version="1.1.1"; sha256="0zkr2xfvwlqxcfj59801vm54l38agipbkd9qgq6jkmqkdbkfv3yr"; depends=[mvtnorm sampleSelection]; }; EMSaov = derive2 { name="EMSaov"; version="2.3"; sha256="1hpvwimhkl7za5s8j9n4a8883vy89jrxrhlh0k3cfprnndh4zz05"; depends=[shiny]; }; - EMT = derive2 { name="EMT"; version="1.3"; sha256="0zmcakph88qg9f1p7icn4llw92nh1jfijxsx3rhl7g9d4rihprq5"; depends=[]; }; + EMT = derive2 { name="EMT"; version="1.3.1"; sha256="0g4s99cbww9wi89acbpn8ggkfkf39nq0km0nhm5956r62sjw2wfr"; depends=[]; }; EMbC = derive2 { name="EMbC"; version="2.0.4"; sha256="03vsyzq4zgv64yzazplj1sm3kgw0pdildcvi8w88b3d0rkjnhn5m"; depends=[mnormt RColorBrewer Rcpp RcppArmadillo sp suntools]; }; EMgaussian = derive2 { name="EMgaussian"; version="0.2.1"; sha256="0gl3lfww7chwsvg16m5x6agbza4xx482b56wqccb9zqin0j89dfb"; depends=[caret glasso glassoFast lavaan Matrix matrixcalc Rcpp RcppArmadillo]; }; EMpeaksR = derive2 { name="EMpeaksR"; version="0.3.1"; sha256="0hzw4hnisqa13h75faq4hdsmg3y6dlmfknbkql4mbdx4s3qb19fv"; depends=[]; }; @@ -1505,14 +1540,16 @@ in with self; { EQL = derive2 { name="EQL"; version="1.0-1"; sha256="0pa33h0f30l352m6ix296l55lvqxdaib666x2dwy9zx0lmk23w8m"; depends=[lattice ttutils]; }; EQUIVNONINF = derive2 { name="EQUIVNONINF"; version="1.0.2"; sha256="08d74jm9my2p9r491v1hya7w2m9b4mf3vk812jsmrdfzdw3x47ab"; depends=[BiasedUrn]; }; ER = derive2 { name="ER"; version="1.1.1"; sha256="1hsp5sqhnsz175nc2cq2w4g6dgld1429ib7w58piw6982b7m6zn6"; depends=[ggplot2 glmnet gridExtra pls plsVarSel scales]; }; + ERDbuilder = derive2 { name="ERDbuilder"; version="1.0.0"; sha256="10dy9cb0dr3fcxl39r39adjcxafwc8mfcf32153lad8030d15y4w"; depends=[DiagrammeR dplyr]; }; ERP = derive2 { name="ERP"; version="2.2"; sha256="17i04rgfj9crnvpi7mf2spwmaw9jgw4kn5fx6x9xbl9cvwwx6q4k"; depends=[corpcor fdrtool irlba mnormt pacman]; }; + ERPM = derive2 { name="ERPM"; version="0.2.0"; sha256="1c2w61m7qp6ma4kfhgg0bxn4mkvcss340yq2vr7y5s1cbd082ndh"; depends=[igraph numbers RColorBrewer snowfall]; }; ERPeq = derive2 { name="ERPeq"; version="0.1.0"; sha256="1619j6fgsg594fdbv9qk64rw2yqsy7wyj8qnwmpnmv66gxc5mqaq"; depends=[invgamma pracma rmutil VGAM]; }; ERSA = derive2 { name="ERSA"; version="0.1.4"; sha256="1ri2v6qxdi9if10vxxhgj0jwk4whfi45aqqdqri918djg0dk75p1"; depends=[broom car combinat dplyr ggplot2 leaps miniUI purrr RColorBrewer rlang shiny tidyr]; }; ESG = derive2 { name="ESG"; version="1.3"; sha256="1r454bn7wwc8nv9f1z0dfgn6kj9ac35b3i19xx385jhlqsm1akgw"; depends=[]; }; ESTER = derive2 { name="ESTER"; version="0.2.0"; sha256="1jiyqq5hgqc754r434sik9jnlpw66xz56cjdf5ig95qkffzsg224"; depends=[brms cowplot doParallel dplyr foreach ggplot2 lme4 magrittr rlang tidyr]; }; EScvtmle = derive2 { name="EScvtmle"; version="0.0.2"; sha256="0bp5ykqczj6zyb9g5rg9zwwdyvd3l530km927wwxdi862sh5ri5g"; depends=[dplyr ggplot2 gridExtra MASS origami stringr SuperLearner tidyselect]; }; ETAS = derive2 { name="ETAS"; version="0.6.1"; sha256="1ivnv05cfbrrmglz319202nssghaq15h6l35k1pbal9gg7izd7xm"; depends=[fields goftest lattice maps Rcpp spatstat_explore spatstat_geom spatstat_random]; }; - ETASbootstrap = derive2 { name="ETASbootstrap"; version="0.1.0"; sha256="0fianmqnbrscrkbqqg3lw53j0cczygrb3mhy80zcnsr0rmk02zj2"; depends=[ETAS MASS]; }; + ETASbootstrap = derive2 { name="ETASbootstrap"; version="0.2.0"; sha256="1d0vdd3ldp2w6p15b8jj74l3fd28sjrcxhq1w4zdqh6r38m0cshg"; depends=[ETAS MASS spatstat_geom]; }; ETC = derive2 { name="ETC"; version="1.5"; sha256="16ciff8bf2p56941r83y7405sp5pfms63dwjd232ih3mnznjpc0f"; depends=[mvtnorm]; }; ETLUtils = derive2 { name="ETLUtils"; version="1.5"; sha256="0s0q4f3wzpdd87l3pnzysa8aq7zgz29589xnm65a6xfy9znbpzs3"; depends=[bit ff]; }; EUfootball = derive2 { name="EUfootball"; version="0.0.1"; sha256="0h36cqi752zs32gs55rdniabldr8jph7gc1y2yb9983cl4mfrjv0"; depends=[]; }; @@ -1521,7 +1558,8 @@ in with self; { EVchargcost = derive2 { name="EVchargcost"; version="0.1.0"; sha256="1xwyclfaq50805n3h052vxlyhmiayy9338gqmx6vgj77s8fw3ds1"; depends=[cowplot ggplot2]; }; EWGoF = derive2 { name="EWGoF"; version="2.2.2"; sha256="19gd9grjjdv6hilqj41g5qhz7m0ga40q88clwggbp5f0f1yd5sym"; depends=[Rcpp]; }; EWS = derive2 { name="EWS"; version="0.2.0"; sha256="0rkxnc5pwrjgm2j201rg0z4nqb75rpkqh3hff4lvw1zmnr9flm6r"; depends=[numDeriv]; }; - EWSmethods = derive2 { name="EWSmethods"; version="1.2.5"; sha256="1ci968fnid8f1c17idsahmmwzzly28x1603prcgdy0fdfmk5srbs"; depends=[curl dplyr egg foreach forecast ggplot2 gtools infotheo mAr moments rEDM reticulate scales tidyr zoo]; }; + EWSmethods = derive2 { name="EWSmethods"; version="1.3.1"; sha256="16dk3p8km8s0ih4q2gdhvx0zakb3rh7ywz8shcy1g8yp0790bmwm"; depends=[curl egg foreach forecast ggplot2 gtools infotheo mAr moments rEDM reticulate scales zoo]; }; + EXPAR = derive2 { name="EXPAR"; version="0.1.0"; sha256="0k6aq87k9ml3815zi5fvspaky6sd6qzbm3l8a80rgls2ha2886r9"; depends=[forecast]; }; EXPARMA = derive2 { name="EXPARMA"; version="0.1.0"; sha256="120w491g925vzxriinfsgxs4kgx58dy4awb2knichsa4p1w5gvly"; depends=[forecast]; }; EXRQ = derive2 { name="EXRQ"; version="1.0"; sha256="1iqsr52sl2j5q03122a7rsp6n6a2bkysk2r908c89l36gk4sj2i5"; depends=[mnormt quantreg]; }; EZtune = derive2 { name="EZtune"; version="3.1.1"; sha256="0scslbgbbwma7sr0w9awg58ly5jwn877xsk6q1gq0ss3rd17pmfk"; depends=[ada BiocStyle e1071 GA gbm glmnet optimx ROCR rpart]; }; @@ -1533,29 +1571,32 @@ in with self; { EbayesThresh = derive2 { name="EbayesThresh"; version="1.4-12"; sha256="07a2dd3za2dc81n6m2xy794sclp3yw7f46lg1igaflh7m9407198"; depends=[wavethresh]; }; Ecdat = derive2 { name="Ecdat"; version="0.4-2"; sha256="1vyc4ynkd65mng2x8wvzn47crsvaqfz97n89jxn12xv13bpsbs7c"; depends=[Ecfun]; }; Ecfun = derive2 { name="Ecfun"; version="0.3-2"; sha256="1q0mx70hy18rabpabxghaixkb3r1432cxln844cac4dqxhvzcqgy"; depends=[BMA fda jpeg MASS mvtnorm rvest stringi TeachingDemos tis xml2]; }; - EcoDiet = derive2 { name="EcoDiet"; version="2.0.0"; sha256="1lgjymm2anb7f11gvg0875wyjjfzbh0y1vwinbidpn2kmgm9b05h"; depends=[coda ggmcmc ggplot2 jagsUI]; }; + EcoDiet = derive2 { name="EcoDiet"; version="2.0.1"; sha256="0vw6q5yf5aq4gdim7yr188f9hbrd5giaivl27y4qrz987i152v8c"; depends=[coda ggmcmc ggplot2 jagsUI]; }; EcoEnsemble = derive2 { name="EcoEnsemble"; version="1.0.5"; sha256="0d5kha5i49p7fd8g4f1i999sag4jz8if6yashshr9hp6jr6mibpc"; depends=[BH cowplot dplyr ggplot2 matrixcalc Rcpp RcppEigen RcppParallel reshape2 rstan rstantools StanHeaders tibble]; }; EcoIndR = derive2 { name="EcoIndR"; version="2.0"; sha256="0wsr3lmmg6rph6mlq6mrwlal4ph65ps5vyqkglbzb67xz7kc1hz5"; depends=[FD picante Rarity splancs vegan]; }; EcoNetGen = derive2 { name="EcoNetGen"; version="0.2.4"; sha256="0ljihc60b3k25hn3z09arql2y0byhxx4mljm2w4m8f3micqfwzfw"; depends=[ggplot2 igraph]; }; EcoTroph = derive2 { name="EcoTroph"; version="1.6.1"; sha256="0nrq6n7amz8l6rk0wfyrih7rkic96yc02rpk4szis81v7yvm7346"; depends=[XML]; }; EcoVirtual = derive2 { name="EcoVirtual"; version="1.1"; sha256="1aryl2sb5ak390lgnm427ilm6xv9lmsjhwdnapzc033zvqb099gj"; depends=[]; }; Ecohydmod = derive2 { name="Ecohydmod"; version="1.0.0"; sha256="0imkzjqp3g28l42jz5m4p85wg5rawmn9hy1wys9xndnaliv6d7r2"; depends=[]; }; + EconAndProdEfficiency = derive2 { name="EconAndProdEfficiency"; version="0.1.0"; sha256="05a0dnhi41ch833hi2w4mvifq4rcxg79gcyr6yzgc5gxw57rsxf2"; depends=[]; }; EconDemand = derive2 { name="EconDemand"; version="1.0"; sha256="1slpwiaxj7w21zdri9myrzwbwzl62m3cnp0g4fr2rkdlzgb6j5yj"; depends=[]; }; EconGeo = derive2 { name="EconGeo"; version="2.0"; sha256="0yf3hwgj2crpm8nm4whc1cygrql4v2n0s1ziwpl6k2rxbyibaj1w"; depends=[Matrix reshape]; }; EcotoneFinder = derive2 { name="EcotoneFinder"; version="0.2.3"; sha256="1liqjakzg4c5kgjiir8i4fp4ax0737lfwriz277crh9p3jn3dgmh"; depends=[cluster colorspace corrplot e1071 ggplot2 igraph philentropy plyr purrr qgraph reshape rlang Rmisc vegan vegclust withr]; }; - Ecume = derive2 { name="Ecume"; version="0.9.1"; sha256="093yx24hckgwvkdjgir33lkc7hhiv4is8a4a7fdcrp46iszx0b4i"; depends=[caret dplyr e1071 kernlab magrittr pbapply spatstat spatstat_geom transport]; }; - EdSurvey = derive2 { name="EdSurvey"; version="4.0.4"; sha256="1qp2mj9x8jk3za9m86890h1261vc7z621myv2i1kjyli3afmbm3p"; depends=[car data_table Dire Formula glm2 haven LaF lfactors lifecycle lme4 MASS Matrix NAEPirtparams NAEPprimer quantreg readxl tibble wCorr WeMix xml2 xtable]; }; + Ecume = derive2 { name="Ecume"; version="0.9.2"; sha256="0dgw1ddl4wzd50v04jyjrxdl92jwzb2cyahfkjfyayi0yg40p78h"; depends=[caret dplyr e1071 kernlab magrittr pbapply spatstat_univar transport]; }; + EdSurvey = derive2 { name="EdSurvey"; version="4.0.6"; sha256="1f26cmbfqb660335wzi0lx48q8dp0dbypykyskv7njf7rf0mg1cr"; depends=[car data_table Dire Formula glm2 haven LaF lfactors lifecycle lme4 MASS Matrix NAEPirtparams NAEPprimer quantreg readxl tibble wCorr WeMix xml2 xtable]; }; EffectLiteR = derive2 { name="EffectLiteR"; version="0.4-6"; sha256="0h8cbpcnwxll5asjfay06zzh7imzqxbiv5b8iv4wbdkzwh68830r"; depends=[car foreign ggplot2 lavaan nnet shiny]; }; EffectStars = derive2 { name="EffectStars"; version="1.9-1"; sha256="131w5bdc615gaa2czi4wyc2f96jcg24ahcmggajrvyhxmi6rag5x"; depends=[VGAM]; }; EffectStars2 = derive2 { name="EffectStars2"; version="0.1-3"; sha256="0yh4krqjh1jb7gjxb9z4f5bzarps0g9jfqbbva782a881dhcdl1x"; depends=[miscTools VGAM]; }; EffectTreat = derive2 { name="EffectTreat"; version="1.1"; sha256="1kw1vq9y1q3xyiqsk855wjn9jqkzdh6h4xklbl9kvbqsvvhhsgkz"; depends=[]; }; EfficientMaxEigenpair = derive2 { name="EfficientMaxEigenpair"; version="0.1.4"; sha256="1s0i9a2vk2g4f5gadsvzjfkw91hcjsrbyjg2vgnj1v17xrwgp40w"; depends=[]; }; - EgoCor = derive2 { name="EgoCor"; version="1.1.0"; sha256="0i33knfyhwcw8rasv3h2rp90vifrba08zmwqz4825bdx6f8zaa52"; depends=[gstat Rdpack shiny sp SpatialTools]; }; - EigenR = derive2 { name="EigenR"; version="1.2.3"; sha256="0jlk4kl0rl41kgxyg2a7q0bdcl45fc8qnqqzmv80ni9fwg23203l"; depends=[Rcpp RcppEigen]; }; + EgoCor = derive2 { name="EgoCor"; version="1.2.0"; sha256="135k9yccmzbkzhf8dlzm00pawaav01bzw4r2y45mcb1fdfwf5fg2"; depends=[gstat Rdpack shiny sp SpatialTools]; }; + EigenR = derive2 { name="EigenR"; version="1.3.0"; sha256="07223lp4x9zlcj0s5pjcw2475qwv8a0njdz1ac8v0wiw0bkxa6wl"; depends=[Rcpp RcppEigen]; }; EleChemr = derive2 { name="EleChemr"; version="1.2.0"; sha256="1wr2lkaf56qxsnqi7mgbgzy72lhkr0xlr1w1l9hy1dpmmqcqw7l3"; depends=[ggplot2]; }; + ElevDistr = derive2 { name="ElevDistr"; version="1.0.8"; sha256="119r06ijd72z2f9asydlcy6i7sqgzfapy02wn13x5zf1cp459n8a"; depends=[ggmap ggplot2 RANN terra]; }; Elja = derive2 { name="Elja"; version="1.0.0"; sha256="0znq40ccr828j9xwa3xixdp0i2fyj0x02lh5vxb61bf96y9njsvy"; depends=[devtools dplyr ggplot2 MASS]; }; ElliptCopulas = derive2 { name="ElliptCopulas"; version="0.1.3"; sha256="1hnkhd9hw2550kzjyycl1hzm9pk9j11n96hka59z8x74vrz980qp"; depends=[Matrix pbapply Rmpfr Runuran wdm]; }; EloChoice = derive2 { name="EloChoice"; version="0.29.4"; sha256="1g8ivvnv16c2gniwd9xa9z89bm4rac0nrg3mcg1risgf9yk4rgm5"; depends=[psychotools Rcpp RcppArmadillo Rdpack]; }; + EloOptimized = derive2 { name="EloOptimized"; version="0.3.2"; sha256="0922xaicxkgiqaf126dbm6shm6ca7blwc13nwb3djmm7ky9m0lai"; depends=[BAMMtools dplyr lubridate magrittr reshape2 rlang]; }; EloRating = derive2 { name="EloRating"; version="0.46.11"; sha256="09nh3ia4s3c9yjhw0f0haqb26fryfc4lf9rgfcbqqzzwgdr1invj"; depends=[network Rcpp RcppArmadillo Rdpack sna zoo]; }; EloSteepness = derive2 { name="EloSteepness"; version="0.5.0"; sha256="1fqqvwbvhlr5h30mav5nch4gqjr61yvpydmbd1zq4a19hwb8rivd"; depends=[aniDom BH EloRating Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; EmbedSOM = derive2 { name="EmbedSOM"; version="2.1.2"; sha256="0k4hja5y7qd0n3gfaxzxrz4wpxc1w9d4d4xbb63rq2nfk3lj7a42"; depends=[FNN ggplot2 igraph Matrix Rtsne umap uwot]; }; @@ -1566,6 +1607,7 @@ in with self; { EncDNA = derive2 { name="EncDNA"; version="1.0.2"; sha256="0wy2cmcvyqjhg5mqbvdzmihfv8swx7ym2n9mjdqgx0kgnc7k614y"; depends=[Biostrings]; }; EncompassTest = derive2 { name="EncompassTest"; version="0.22"; sha256="1pk5b272k4flv07mjjg7jyj0v3qg5j5hhk3sgwh0wwvc83nadi7r"; depends=[pracma]; }; EnergyOnlineCPM = derive2 { name="EnergyOnlineCPM"; version="1.0"; sha256="1a3wvclqdwcvq5inhliwjnd7xzqbjvzs8h8ncy6qlhjq6s5n7nm8"; depends=[energy MASS]; }; + EngrEcon = derive2 { name="EngrEcon"; version="1.0.0"; sha256="1jb2gyx2w210w76nwrc77hfn8qyn2rnykax8a5bpzci6lqlxcb3f"; depends=[]; }; EngrExpt = derive2 { name="EngrExpt"; version="0.1-8"; sha256="0zclvckj2i7j4kfs58hcjcl722vl2y6dcnjz238cjfgwv279gqhp"; depends=[lattice]; }; EnrichIntersect = derive2 { name="EnrichIntersect"; version="0.7"; sha256="0hgiy7l2vpxs94xici7fx8xwkxi8r79513zqczy8143d889l43c6"; depends=[dplyr ggplot2 htmlwidgets jsonlite networkD3 webshot2]; }; EnsCat = derive2 { name="EnsCat"; version="1.1"; sha256="1rp354fqq2ihjrmqw9j1qdy86md80xml5sgh2zbyabw3zddmgyn2"; depends=[dendextend ggdendro ggplot2 seqinr]; }; @@ -1581,7 +1623,7 @@ in with self; { EnvNicheR = derive2 { name="EnvNicheR"; version="1.5"; sha256="1zg59w5ynhrl74z0y8f656rfqsicwc0sp6awgg655yr68c6xa0jp"; depends=[IDPmisc]; }; EnvStats = derive2 { name="EnvStats"; version="2.8.1"; sha256="19nnab201yalxbgpvpp5lkgqs0m17b5plsswmaxbvdv4mag2p58j"; depends=[ggplot2 MASS nortest]; }; EnviroPRA2 = derive2 { name="EnviroPRA2"; version="1.0.1"; sha256="0r73l4f221ryyh2nfp0whcmhq06rzim447lqa56rmv00hcsmda52"; depends=[fitdistrplus kSamples MASS truncdist]; }; - Epi = derive2 { name="Epi"; version="2.47.1"; sha256="1a4h6hfpwcy3lb49y949h86vr4sdnjfbqqnr4jgc45mc64fhafp1"; depends=[cmprsk data_table dplyr etm magrittr MASS Matrix mgcv numDeriv plyr survival zoo]; }; + Epi = derive2 { name="Epi"; version="2.51"; sha256="0m9rvh21l9lqdlv71jrbix10g97wy2ryjv4zdjykfldhzzn4siik"; depends=[cmprsk data_table dplyr etm magrittr MASS Matrix mgcv numDeriv plyr survival zoo]; }; EpiContactTrace = derive2 { name="EpiContactTrace"; version="0.17.0"; sha256="0s3mfv1djrq1kp75f94z4fhrx3jha4vvil30daxkw5b0iy3mvf5q"; depends=[]; }; EpiCurve = derive2 { name="EpiCurve"; version="2.4-2"; sha256="1z81zrg96hmgj2j37vwwg0bd84bq80ck3f704w9j6v0drckzh03j"; depends=[dplyr ggplot2 ISOweek RColorBrewer scales tibble timeDate]; }; EpiDynamics = derive2 { name="EpiDynamics"; version="0.3.1"; sha256="0m6yay3r7dqih19f76wxwgq6dh9p1zmp5d9ilj9nd262q61jcy53"; depends=[deSolve ggplot2 reshape2]; }; @@ -1592,7 +1634,7 @@ in with self; { EpiInvert = derive2 { name="EpiInvert"; version="0.3.1"; sha256="0afmgzx7ryvwb8ajkm0v077lrnahac8g3jqkk86imx4101dfg70q"; depends=[Rcpp]; }; EpiLPS = derive2 { name="EpiLPS"; version="1.3.0"; sha256="0wdmkwcyqhjyyxrg7669sfrfqarvg5qrdm5zrchv9hnzjfxm4k9p"; depends=[coda EpiEstim ggplot2 gridExtra Rcpp RcppArmadillo]; }; EpiModel = derive2 { name="EpiModel"; version="2.4.0"; sha256="0bwi7rkiv2cg1srmzbyly89w6p9xppk90vjmbw6h5k9481gn097h"; depends=[ape coda deSolve doParallel dplyr egor ergm ergm_ego foreach ggplot2 lazyeval network networkDynamic networkLite RColorBrewer Rcpp rlang statnet_common tergm tibble]; }; - EpiNow2 = derive2 { name="EpiNow2"; version="1.4.0"; sha256="0dadwmzfb0cqpa9ngqndy7q3zpi3wh1al6fy7i6gdhvnfm1gkahs"; depends=[BH data_table futile_logger future future_apply ggplot2 lifecycle lubridate patchwork progressr purrr R_utils Rcpp RcppEigen RcppParallel rlang rstan rstantools runner scales StanHeaders truncnorm]; }; + EpiNow2 = derive2 { name="EpiNow2"; version="1.5.2"; sha256="0nqa7dvp04ysqgdd5cjzfcd5vshk7jca251ljn8j55va186frmn5"; depends=[BH checkmate data_table futile_logger future future_apply ggplot2 lifecycle lubridate patchwork posterior progressr purrr R_utils Rcpp RcppEigen RcppParallel rlang rstan rstantools runner scales StanHeaders truncnorm]; }; EpiReport = derive2 { name="EpiReport"; version="1.0.2"; sha256="1dh9rjdjgmwzvfslzgnmd37ipj7ydbn4pnngz4sw7nknqy7r4dpx"; depends=[dplyr flextable ggplot2 officer png tidyr tidyselect zoo]; }; EpiSemble = derive2 { name="EpiSemble"; version="0.1.1"; sha256="021cp01wc3m3mhallzszlwd07pjdylgp980978qm35ylasl7z3b5"; depends=[Biostrings caret devtools doParallel e1071 entropy foreach ftrCOOL gbm iterators party randomForest seqinr splitstackshape stringr tibble tidyverse]; }; EpiSignalDetection = derive2 { name="EpiSignalDetection"; version="0.1.2"; sha256="17mawnx3c87kgfa7aj42a7db9c1ciyxdfgka9sgx6lc0yw5249as"; depends=[dplyr ISOweek rmarkdown shiny surveillance]; }; @@ -1609,7 +1651,7 @@ in with self; { EthSEQ = derive2 { name="EthSEQ"; version="3.0.2"; sha256="0wrqdvcfag83qidrfg2b6q86xmb3f03mda4kwx0f4a53wl5fjdrx"; depends=[data_table gdsfmt geometry MASS plot3D Rcpp SNPRelate]; }; EuclideanSD = derive2 { name="EuclideanSD"; version="0.1.0"; sha256="1w5s1zkb81v150nvaygvyla2x0vh4c99vd5jw53jcq68sv9hby3i"; depends=[shiny]; }; Euclimatch = derive2 { name="Euclimatch"; version="1.0.1"; sha256="09nydlqdxpfcvfaznpjchw3zlz05a03n7picn419ivvjmf6hrx8x"; depends=[doParallel foreach RColorBrewer Rcpp RcppParallel terra]; }; - Euronext = derive2 { name="Euronext"; version="2.0.2"; sha256="09pj10rc3rhwpdxyh6np4978jjg74k8c7m8di7c7j70ran270ybq"; depends=[dplyr flextable highcharter httr httr2 jsonlite magrittr rlang rvest stringr xts]; }; + Eunomia = derive2 { name="Eunomia"; version="2.0.0"; sha256="1ma5xsfyj6f1dd6n7k4fqxil3xbgj2d79vb7b4zjqf7cb14vljlg"; depends=[arrow CommonDataModel DBI readr rlang RSQLite]; }; EurosarcBayes = derive2 { name="EurosarcBayes"; version="1.1"; sha256="12311s6ibw9q6kykhh689r93r7mwjhwrhkzdpc75grvw6ilgjmpm"; depends=[clinfun data_table plyr shiny VGAM]; }; EvCombR = derive2 { name="EvCombR"; version="0.1-4"; sha256="038crxa3a7h8zxjmcy98pq1zlc6gnlqjy39srh8mai9ksalx672x"; depends=[]; }; Evacluster = derive2 { name="Evacluster"; version="0.1.0"; sha256="01nxclrp90qhlnxl0yf2srppglic6m3f7pl35h62r6kxic0lrzhs"; depends=[]; }; @@ -1619,7 +1661,6 @@ in with self; { EventDetectGUI = derive2 { name="EventDetectGUI"; version="0.3.0"; sha256="02gwgbp692cfmf933jg1f7h4gghhc1v2cswz7rpcazm8h39mc4wh"; depends=[DT EventDetectR ggplot2 plotly shiny shinyBS shinydashboard shinyjs XML]; }; EventDetectR = derive2 { name="EventDetectR"; version="0.3.5"; sha256="0wx3bcs8n95fmyc5vnlrwd75bzqqvy6czb9bsbp04g3770c5ja0r"; depends=[forecast ggplot2 gridExtra imputeTS neuralnet]; }; EventPredInCure = derive2 { name="EventPredInCure"; version="1.0"; sha256="1i11v671l5x31nhx0vz2zmjv3g3xr2yszd9vkhg71xnxmr1156cy"; depends=[dplyr erify flexsurv KMsurv lubridate MASS Matrix MLEcens msm mvtnorm numDeriv perm plotly rlang rstpm2 survival tmvtnsim]; }; - EventStudy = derive2 { name="EventStudy"; version="0.39.2"; sha256="1z12nrkmpsv5cgm97g36vbwfdf0m1abfmwfln4xhy38d0qs61zi9"; depends=[curl data_table dplyr ggplot2 httr jsonlite magrittr miniUI purrr RColorBrewer readr rlang rstudioapi scales shiny stringr testthat tidyr]; }; EventWinRatios = derive2 { name="EventWinRatios"; version="1.0.0"; sha256="1hsq4g7hh71lzxzkmhm15mk3xpxaq75rqhgslf4qif6x7pm0p859"; depends=[]; }; EvidenceSynthesis = derive2 { name="EvidenceSynthesis"; version="0.5.0"; sha256="0zyah27p1j7sxpcgpr05ws1whw7dd876nzygcvh5pyiikkahfmcm"; depends=[BeastJar coda Cyclops dplyr EmpiricalCalibration ggdist ggplot2 gridExtra HDInterval meta rJava rlang survival]; }; EviewsR = derive2 { name="EviewsR"; version="0.1.6"; sha256="1sdhv9gra2rmp63fil61lq61a2jlfhajxd4nicvag11cnar880js"; depends=[knitr magrittr xts zoo]; }; @@ -1633,7 +1674,7 @@ in with self; { ExPosition = derive2 { name="ExPosition"; version="2.8.23"; sha256="0x9400ggmgrnaish0cfgnyvw549g4ibfv9aj6vzq7j68n58vq405"; depends=[prettyGraphs]; }; Exact = derive2 { name="Exact"; version="3.2"; sha256="0a33gbhzd580i31xxsjxigg0nl8ag1x4xz3jqmq5jqappc6f5d2k"; depends=[rootSolve]; }; ExactCIdiff = derive2 { name="ExactCIdiff"; version="2.1"; sha256="1rhwdhgj3d6m4x75v5m03y6l2sf7ndgb15qc8k7kx7vr6c03zl8v"; depends=[]; }; - ExactCIone = derive2 { name="ExactCIone"; version="1.0.0"; sha256="0mi3n215c9zxsg6xjjj6l3g9lfwnglr1d47b6m0giyds80y9s7l6"; depends=[]; }; + ExactCIone = derive2 { name="ExactCIone"; version="1.0.5"; sha256="049fh70aidsl60f355jkx93brkvaadpvlk7wxc196s51fddz2lwa"; depends=[]; }; ExactMed = derive2 { name="ExactMed"; version="0.3.0"; sha256="0cjpnym71n2w0yk9xh5b65x35g4ycy20d9ydk43xw0nl1cpksd56"; depends=[brglm2 dfidx lmtest mlogit nnet pkgcond sandwich]; }; ExactMultinom = derive2 { name="ExactMultinom"; version="0.1.2"; sha256="1ygsiwcsmda0pbp7lzr03sb461mr9fff7hxp1lil40y9z0xgdmmb"; depends=[Rcpp]; }; ExamPAData = derive2 { name="ExamPAData"; version="0.5.0"; sha256="1wjzg5b3xcl5njk95h2c8xz4k727d62182nbf49qrvd3nbd3bscj"; depends=[]; }; @@ -1647,7 +1688,7 @@ in with self; { ExpDes = derive2 { name="ExpDes"; version="1.2.2"; sha256="145x7zzhgs7rqbamsfwcxlhppxmy9l6v4a1wximac8qgp7i0wdpi"; depends=[stargazer]; }; ExpDes_pt = derive2 { name="ExpDes.pt"; version="1.2.2"; sha256="05s7j3afs97x0k4w9rsjic1519ilzri250x5rl6l6smqivjaplci"; depends=[stargazer]; }; ExpGenetic = derive2 { name="ExpGenetic"; version="0.1.0"; sha256="096cxaqbc9y0bnj70fxk94585c880020pqqcx0dwwj839qkry4ha"; depends=[DESeq2 futile_logger ggplot2 ggsci plyr VennDiagram]; }; - ExpImage = derive2 { name="ExpImage"; version="0.9.0"; sha256="1f6pddzfwmpv0gnzbpbkqzg6scafzjmpicblqz3m36nnj87l9pn7"; depends=[crayon doParallel foreach ggplot2 progress randomForest raster rstudioapi schemr]; }; + ExpImage = derive2 { name="ExpImage"; version="0.10.1"; sha256="1xl8g5782gwlz3ibqrx5szv5rnq9n5bigwcfxk4fxh8yfz6i73gi"; depends=[crayon doParallel foreach ggplot2 progress randomForest raster rstudioapi schemr]; }; ExpRep = derive2 { name="ExpRep"; version="1.0"; sha256="0spv3wd9c8sr338n5kdzrs28yh7s90fl70wsdnkibmlxhnh3ay3g"; depends=[]; }; ExpertChoice = derive2 { name="ExpertChoice"; version="0.2.0"; sha256="1pd4v240ywc4wzh249axxb4kz5dccizc08jdjnaygz35hjdg5hvj"; depends=[DoE_base dplyr far purrr rlist]; }; ExplainPrediction = derive2 { name="ExplainPrediction"; version="1.3.0"; sha256="14m3b9fsrpfpr8avsnhl8b3bzk2xlhwgkwag5iq8bj7bzvv4yck1"; depends=[CORElearn semiArtificial]; }; @@ -1662,7 +1703,7 @@ in with self; { ExtremeRisks = derive2 { name="ExtremeRisks"; version="0.0.4"; sha256="1mvkrwyj9kwg35dzm9jzx311qqd4v3nnbrr6d64x476ni4pnrbl8"; depends=[copula evd mvtnorm plot3D pracma tmvtnorm]; }; EzGP = derive2 { name="EzGP"; version="0.1.0"; sha256="0ln7xa9gys19xyn4wkfxaxfpyvaxvcag04s3j9sc19ff8xdxzf3z"; depends=[nloptr]; }; FABInference = derive2 { name="FABInference"; version="0.1"; sha256="0d11vxxa0mry735n7an8n97wmxyffsj4hirxlysljs941zhkhhw4"; depends=[MASS]; }; - FACT = derive2 { name="FACT"; version="0.1.0"; sha256="0frj0qgdq8j8khy4dlv63zismjczijm0q7j5ha59m0dgxr93khfg"; depends=[checkmate data_table ggplot2 gridExtra iml prediction R6]; }; + FACT = derive2 { name="FACT"; version="0.1.1"; sha256="0klks2r2jf5v5z2n3gvqbssrpdd6nccbk7izvdl1cknisq8z5w4b"; depends=[checkmate data_table ggplot2 gridExtra iml R6]; }; FACTMLE = derive2 { name="FACTMLE"; version="1.1"; sha256="0qz2i0hnn84bpps1h8jmfkgp5p59axr0wayj9dvl839radrvpqvy"; depends=[rARPACK]; }; FADA = derive2 { name="FADA"; version="1.3.5"; sha256="0srv3rghbkgyxbcjc1v68c5qgcir1d618skpc8imfmdaz9pnxchn"; depends=[corpcor crossval elasticnet glmnet MASS matrixStats mnormt sda sparseLDA]; }; FADPclust = derive2 { name="FADPclust"; version="1.1.1"; sha256="111lpq5hdrpyj8wdscjswk5p4akxhj3jbj5xk6ias2s5gfprla14"; depends=[cluster fda fda_usc fpc funData MFPCA]; }; @@ -1671,7 +1712,7 @@ in with self; { FAMetA = derive2 { name="FAMetA"; version="0.1.6"; sha256="0hn4g0qqiy15jg42g27v0rmplm8gh84fr0kpp7q56c21mcs5w4h3"; depends=[accucor gplots gtools knitr LipidMS minpack_lm plyr rmarkdown scales tidyr]; }; FAMoS = derive2 { name="FAMoS"; version="0.3.0"; sha256="14gr9wv9bpibk0rrzzwijvdncx1fgnpbv55nqzbb4jhq7fdckmsa"; depends=[future R_utils]; }; FAO56 = derive2 { name="FAO56"; version="1.0"; sha256="0qckfkka487sdvynjk1pl49scqykg7a2hrcyp00xzyl7x9nvim15"; depends=[]; }; - FAOSTAT = derive2 { name="FAOSTAT"; version="2.3.0"; sha256="05nwskl8l68rrf0krfmw2sc3snpygqsgdi40kbfim9wfqyy175di"; depends=[classInt data_table httr labeling MASS plyr RJSONIO]; }; + FAOSTAT = derive2 { name="FAOSTAT"; version="2.4.0"; sha256="0fyd9ypssax6pm3fzw7g864kaamfh8r3hi4ljd972g13n82b1jag"; depends=[classInt data_table httr labeling MASS plyr RJSONIO]; }; FARDEEP = derive2 { name="FARDEEP"; version="1.0.1"; sha256="0blvjakcpkh9vpxryk7qyaqnija0r375ckv37kjlr34xg8pg9qnm"; depends=[nnls preprocessCore]; }; FAS = derive2 { name="FAS"; version="1.0.0"; sha256="16sqbykf14p0wch1xryrx4ikwa7mxfkprxgyxlwsidxf94ny17iq"; depends=[Matrix pracma]; }; FAST_R = derive2 { name="FAST.R"; version="0.2.1"; sha256="178v16f6f5manifv15r44mkl1zqspc9p4vwah3yvnqgd0zwq92x7"; depends=[caret dplyr DT ggplot2 magrittr plater purrr RColorBrewer readxl scales shiny shinyFeedback shinyjs stringr tibble tidyr waiter zip]; }; @@ -1708,8 +1749,8 @@ in with self; { FHDI = derive2 { name="FHDI"; version="1.4.1"; sha256="1n1rbrqdphp0prmkili6rnpxwdb7fgwsgncllr6yxlrkr5rb76pm"; depends=[]; }; FHtest = derive2 { name="FHtest"; version="1.5.1"; sha256="0x7lr88w0b09ng7nps490kgj8aqdjzmp9skv9iwqgn871pnpydms"; depends=[interval KMsurv MASS perm survival]; }; FI = derive2 { name="FI"; version="1.0"; sha256="17qzl8qvxklpqrzsmvw4wq3lyqz3zkidr7ihxc4vdzmmz69pyh2f"; depends=[]; }; - FIESTA = derive2 { name="FIESTA"; version="3.6.2"; sha256="00vfh6wclihglgldzqs2zsr37r5a7h51ia3vxmyq5vkk51jqlgrm"; depends=[data_table DBI FIESTAutils gdalraster RSQLite sf sqldf]; }; - FIESTAutils = derive2 { name="FIESTAutils"; version="1.2.2"; sha256="0p78fkc1fw12nv0y7lzdp0df39rcpja7xwqkbzi6i38f3pmw22f1"; depends=[data_table DBI gdalraster hbsae JoSAE mase nlme RColorBrewer Rcpp RPostgreSQL RSQLite sae sf sqldf terra units]; }; + FIESTA = derive2 { name="FIESTA"; version="3.6.4"; sha256="1k7a58807mr32vgs8xgv1ni1ip0kfkd5b3vaxzzyf0jv85dfc8q0"; depends=[data_table DBI FIESTAutils gdalraster RSQLite sf sqldf]; }; + FIESTAutils = derive2 { name="FIESTAutils"; version="1.2.3"; sha256="11ny9cpgbw3lz98hxxsvsjfjxq0y1h8wlv53afwaxwrayckiv981"; depends=[data_table DBI gdalraster hbsae JoSAE mase nlme RColorBrewer Rcpp RPostgres RSQLite sae sf sqldf terra units]; }; FILEST = derive2 { name="FILEST"; version="1.1.2"; sha256="0x95in9yad93j8kbxjykz04x756i1c1cq854c220cc0l3rm3npnl"; depends=[KRIS rARPACK]; }; FIT = derive2 { name="FIT"; version="0.0.6"; sha256="1nkjms9cvigc9sjha1krzhd3nmwsfh8pi0f1plf5k8zpb773zzb2"; depends=[gglasso MASS Rcpp RcppEigen XML]; }; FITSio = derive2 { name="FITSio"; version="2.1-6"; sha256="1qch6z9r8h95jijjdwsi81majgacl42ryzlkn0m1wifkly9mjjrb"; depends=[]; }; @@ -1722,7 +1763,7 @@ in with self; { FLORAL = derive2 { name="FLORAL"; version="0.2.0"; sha256="1a1jnvbfk2fyqs5jw3y04wxln4hxsahv4yiwrhdgdbk4az3yxp9p"; depends=[caret doParallel doRNG dplyr foreach ggplot2 glmnet mvtnorm Rcpp RcppArmadillo RcppProgress reshape survcomp survival]; }; FLR = derive2 { name="FLR"; version="1.0"; sha256="0k50vi73qj7sjps0s6b2hq1cmpa4qr2vwkpd2wv2w1hhhrj8lm0n"; depends=[combinat]; }; FLSSS = derive2 { name="FLSSS"; version="9.1.3"; sha256="1mjjnasc5f3l44dch7wjxl0b6jbcyjkk6m5b3xgjrir5qyy7fmdk"; depends=[Rcpp RcppParallel]; }; - FMAT = derive2 { name="FMAT"; version="2024.3"; sha256="0qqkcjxp375lz0rc4hf2k0n1cgzxxrcq3x3c95k60f90cnk7sydl"; depends=[cli data_table dplyr forcats glue plyr psych PsychWordVec purrr reticulate stringr tidyr]; }; + FMAT = derive2 { name="FMAT"; version="2024.6"; sha256="082i5hzw41vmdg1q7c42jpnisn0mip3mgs0z440dckv7dk2pnr2i"; depends=[cli crayon data_table dplyr forcats glue irr plyr psych purrr reticulate stringr tidyr]; }; FMAdist = derive2 { name="FMAdist"; version="0.1.2"; sha256="09lv6zk36qrrrjs0wkda5rr4pjm7q317gc5dr197w7ggsqibp4b6"; depends=[actuar EnvStats extraDistr fitdistrplus MASS quadprog]; }; FMC = derive2 { name="FMC"; version="1.0.1"; sha256="03g3v1nmidgjcb3nxs7gfk9s20c8vnk0hgijsnydvxi5bypw8s8p"; depends=[minimalRSD]; }; FMCCSD = derive2 { name="FMCCSD"; version="1.0"; sha256="0c50km5ba6biq9p3mycxhy00ij2gr6y5zf3q8ycq0g1mbk8ybfb7"; depends=[numDeriv orthopolynom Rcpp RcppArmadillo splines2]; }; @@ -1736,6 +1777,7 @@ in with self; { FOCI = derive2 { name="FOCI"; version="0.1.3"; sha256="0iax5569a0v18j2l52mw26yimx11fqqbxj5q7jgba9jf7ylp410w"; depends=[data_table gmp proxy RANN]; }; FORTLS = derive2 { name="FORTLS"; version="1.4.0"; sha256="0h5ninw5hkrkbri8yazy5wfv4yslp303iq6fyiwv7nd3wda8wln5"; depends=[data_table dbscan Distance htmlwidgets lidR moments plotly progress raster Rcpp RcppEigen RCSF reticulate scales sf tidyr VoxR vroom]; }; FPCA3D = derive2 { name="FPCA3D"; version="1.0"; sha256="1hrk9caad2s76dx59clxhia45a85khk1y2ii7955f336x55q34a5"; depends=[]; }; + FPCdpca = derive2 { name="FPCdpca"; version="0.1.0"; sha256="0hrciisfnr3b0gs3szjy46fjl8mxpyclmv6ids5mq71spqzaxccp"; depends=[matrixcalc Rdimtools rsvd]; }; FPDclustering = derive2 { name="FPDclustering"; version="2.3.1"; sha256="04m75z320x9bxa3qi3yi60pl6b8fb1lxvx83q81iv42qw4998kd0"; depends=[cluster ExPosition GGally ggeasy ggplot2 klaR MASS mvtnorm rootSolve ThreeWay]; }; FPLdata = derive2 { name="FPLdata"; version="0.1.0"; sha256="0f5j6h4v0a9jk798m02mdq57v8rlkhrpgcrnj1rna34lrz83m51q"; depends=[dplyr readr]; }; FPV = derive2 { name="FPV"; version="0.5"; sha256="0pxa8lbcxw2hx2n0frkx0pdndlcfm7gnh9qay9q53cf5gqzzwvvc"; depends=[FuzzyNumbers FuzzyNumbers_Ext_2]; }; @@ -1747,41 +1789,39 @@ in with self; { FRESA_CAD = derive2 { name="FRESA.CAD"; version="3.4.7"; sha256="1lczys1pcs15w8bz3i6kxglfhi4gih5ayrs51kg7d3c4la4di57a"; depends=[Hmisc miscTools pROC Rcpp RcppArmadillo stringr]; }; FRESHD = derive2 { name="FRESHD"; version="1.0"; sha256="0lpggf59dd3kwp2y9p4acvhdmc6i47bwa5lk6d6cp8q0g7sr44rm"; depends=[glamlasso Rcpp RcppArmadillo RcppEigen]; }; FRI = derive2 { name="FRI"; version="1.0"; sha256="17ddbr0hndpr5627n67467787rq8hidi1jn1c3xf7f7qz800jjf5"; depends=[forcats ggplot2 neuralnet RSNNS]; }; - FRK = derive2 { name="FRK"; version="2.2.2"; sha256="19a4zqqwkjpyssj98qmvzzpgyq988ndvqwh2gjcm5v6q0qpwwc87"; depends=[digest dplyr ggplot2 ggpubr Hmisc Matrix plyr Rcpp RcppEigen reshape2 scales sp spacetime sparseinv statmod TMB]; }; + FRK = derive2 { name="FRK"; version="2.2.3"; sha256="0wlx58il39qnl9wi92mkdhjarqvrp5i2hw4cyzaijrsfal1i0v42"; depends=[digest dplyr ggplot2 ggpubr Hmisc Matrix plyr Rcpp RcppEigen reshape2 scales sp spacetime sparseinv statmod TMB]; }; FSA = derive2 { name="FSA"; version="0.9.5"; sha256="0b9gf1sh7igd6i14cgl6j8ns2zqvpph3830n7b4q9vw4dfcb53g0"; depends=[car dunn_test lmtest plotrix withr]; }; FSAdata = derive2 { name="FSAdata"; version="0.4.1"; sha256="0zh0gkylziysqjc9gn3kjz7070x2rvmi1c64kxl6q2479929hysi"; depends=[]; }; - FSAtools = derive2 { name="FSAtools"; version="2.0.5"; sha256="0i4grcr155vbsnw823jiwngyayzymka9k7zhsbw1f208q6xyrx4d"; depends=[]; }; FSDAM = derive2 { name="FSDAM"; version="2024.1-30"; sha256="1jikdfhqb985a1g0r1z70n9wwnlw1ag32jdc74938ny65gqnp5sb"; depends=[kyotil reticulate]; }; FSInteract = derive2 { name="FSInteract"; version="0.1.2"; sha256="1aci1398aaz0nrl5jy6yh7xik355wf7pwngrsak4qsi94vdj05iy"; depends=[Matrix Rcpp]; }; FSK2R = derive2 { name="FSK2R"; version="0.1.3"; sha256="0hsrg49q42by4i3dywi59wwy5h56fnfdr10s6rk1y9dyliksmj43"; depends=[dplyr purrr R_utils readtext readxl rjson rlang shiny tibble tidyr XML xml2 zip]; }; FSM = derive2 { name="FSM"; version="1.0.0"; sha256="03w182a9i7mra7wpvkm4q4kwhzjs5kc9h4hh26gygl49jkcvril8"; depends=[]; }; - FSMUMI = derive2 { name="FSMUMI"; version="1.0"; sha256="06ri1zi86cm4arjdlp2pha2bvcc8vz6irvd9n3ja074hv62wxcw4"; depends=[FuzzyR lsa]; }; FSSF = derive2 { name="FSSF"; version="0.1.1"; sha256="024g2rv64yqxmbbwrbkpkrzdfshl0n6jll6axsgsp4q4ia4r9401"; depends=[Rcpp RcppArmadillo]; }; FSTpackage = derive2 { name="FSTpackage"; version="0.1"; sha256="1fjqsl59fg4x9vkbv4b0qmfxlaa2q3rzpl40grv24yg6ixfagmdb"; depends=[CompQuadForm MASS Matrix mvtnorm SKAT]; }; FSelector = derive2 { name="FSelector"; version="0.34"; sha256="07nvfykr6zls7ip5nz9j3062nlna2va3dyldck292v96rd56xl99"; depends=[digest entropy randomForest RWeka]; }; FSelectorRcpp = derive2 { name="FSelectorRcpp"; version="0.3.11"; sha256="008zc270injmjhr2zqs0jw21f7vrmmclzjnin9xsx8drfk8bhdvn"; depends=[BH foreach iterators Rcpp RcppArmadillo testthat]; }; - FSinR = derive2 { name="FSinR"; version="2.0.5"; sha256="11ss38qpasbyym9hcfqmv254jvr8lzsw6r85dlm7xlnhfnxil59l"; depends=[caret class digest dplyr e1071 GA mlbench neuralnet prodlim purrr Rdpack rlang rpart tidyr]; }; FUNTA = derive2 { name="FUNTA"; version="0.1.0"; sha256="02yxz95s2hs26mfmgwhv5d54yyjz0aczjpnay8b4gpzbpd6aci61"; depends=[]; }; FWDselect = derive2 { name="FWDselect"; version="2.1.0"; sha256="0w0hkmhcz7h1lixk7p3yffbbalgxwh2lv463vqz361k80sri6wz7"; depends=[cvTools mgcv]; }; FWRGB = derive2 { name="FWRGB"; version="0.1.0"; sha256="0wi1vkb8mmw9f8hzgp8cm6hy9nbglz0x8mllngdamhlvm35gr57d"; depends=[e1071 imager neuralnet]; }; - FaaSr = derive2 { name="FaaSr"; version="1.1.2"; sha256="0497ywlsi97hr8b01yjp5dflgghkwa3m6a5w0lfd16ryg7wild3c"; depends=[base64enc cli httr jsonlite jsonvalidate paws_application_integration paws_compute paws_security_identity paws_storage sodium uuid]; }; + FaaSr = derive2 { name="FaaSr"; version="1.3.0"; sha256="093m5mrxckgl1g3ipab4v77g4129pmb5z9z1fbk2kj9jsb8gznlk"; depends=[askpass base64enc cli httr jsonlite jsonvalidate paws_application_integration paws_compute paws_security_identity paws_storage sodium uuid]; }; FactoClass = derive2 { name="FactoClass"; version="1.2.9"; sha256="1i42mwmkh7lip01x5qkw03xrcqqbsfsa7qs2xrpr9hzfp61f1xcm"; depends=[ade4 ggplot2 ggrepel KernSmooth scatterplot3d xtable]; }; FactoInvestigate = derive2 { name="FactoInvestigate"; version="1.9"; sha256="0kzm57hd2j43kp84x2saz1nj575dw14sx3l9pmqqkr6871jrgjlw"; depends=[FactoMineR ggplot2 rmarkdown]; }; - FactoMineR = derive2 { name="FactoMineR"; version="2.10"; sha256="1kjb0hk7zck8702inw9ayxrpbi8raq3rldxsq848lk15z3wg9r6w"; depends=[car cluster DT ellipse emmeans flashClust ggplot2 ggrepel lattice leaps MASS multcompView scatterplot3d]; }; + FactoMineR = derive2 { name="FactoMineR"; version="2.11"; sha256="0qzhfjcz0kahqf214g4xs7gfpqx05xbfiwa5r2ldgn2drd16phij"; depends=[car cluster DT ellipse emmeans flashClust ggplot2 ggrepel lattice leaps MASS multcompView scatterplot3d]; }; FactorAssumptions = derive2 { name="FactorAssumptions"; version="2.0.1"; sha256="0d7dh67r8s0v952palhx9h6bhhlxw9xcjbj7dxsp2hdhwap72s2y"; depends=[MASS psych]; }; FactorCopula = derive2 { name="FactorCopula"; version="0.9.3"; sha256="1lvqa62v9rvz7pmrx06riqndh4jyw60an04hpg6if523jsxpa5nz"; depends=[abind igraph matlab polycor statmod VineCopula]; }; - Factoshiny = derive2 { name="Factoshiny"; version="2.5"; sha256="1am0lycldx1j75c5lm6hp84845fvcwvrvjbkqs2mf17a3i72ir48"; depends=[colourpicker DT FactoInvestigate FactoMineR ggplot2 ggrepel missMDA shiny shinydashboard shinyjqui]; }; + Factoshiny = derive2 { name="Factoshiny"; version="2.6"; sha256="14ija58kscww8bf4p1lcbwvd7yxmp4h8jnk8898q9qh08rbahram"; depends=[colourpicker DT FactoInvestigate FactoMineR ggplot2 ggrepel missMDA shiny shinydashboard shinyjqui]; }; Fahrmeir = derive2 { name="Fahrmeir"; version="2016.5.31"; sha256="16fbc1zb9x9p04bl7y5nd375pha6bd3hfqqchlk1bqxrj4879y5g"; depends=[]; }; FairMclus = derive2 { name="FairMclus"; version="2.2.1"; sha256="0mhccn6yyf35qb856psh3dpiwdf24l3w2lqr643lkn38lhbmyvn8"; depends=[cluster data_table doParallel dplyr foreach irr magrittr rlist tidyr]; }; + FamEvent = derive2 { name="FamEvent"; version="3.1"; sha256="1b2dh0kcvarczp3666by66sx6v1p2xbj1k43nji7cks1mmmln3qn"; depends=[cmprsk eha kinship2 MASS matrixcalc pracma survival truncnorm]; }; Familias = derive2 { name="Familias"; version="2.6.1"; sha256="1hx35xj5yjpbkpf4hz8kx7i4q3s2m5dvwb0mcnz1svibim04hll0"; depends=[kinship2 Rsolnp]; }; - Families = derive2 { name="Families"; version="2.0.0"; sha256="0zsxsfm4zhjicgw9pr1617mgi8z32acrh1skjrsfp5g9f5m7nnpw"; depends=[ggplot2 msm reshape rlang]; }; + Families = derive2 { name="Families"; version="2.0.2"; sha256="1nxxnm1k6q644hr56xj9sjxyk5pi0rmk8f9gilj59g2y61yc4a4q"; depends=[ggplot2 msm reshape rlang]; }; FamilyRank = derive2 { name="FamilyRank"; version="1.0"; sha256="0v1b3a6rxbbl7xdy977j02x1ni66879x98vg6ngbaqvh7v9vl82x"; depends=[plyr Rcpp RcppArmadillo]; }; FarmSelect = derive2 { name="FarmSelect"; version="1.0.2"; sha256="174rzv9k0hdcfdkv7bisy70rip2iy0bnj3qa54i00wqwjdglgjdn"; depends=[fBasics ncvreg Rcpp RcppArmadillo]; }; FarmTest = derive2 { name="FarmTest"; version="2.2.0"; sha256="1mr2cscz3ywyq280ifaj4gypxanvvl9s7w33ysmwn952camra2md"; depends=[Rcpp RcppArmadillo]; }; FastBandChol = derive2 { name="FastBandChol"; version="0.1.1"; sha256="1hlgipn792vaylvc0r44clkjcnkns6p241a1fs8sb3gpq81naazk"; depends=[Rcpp RcppArmadillo]; }; FastCUB = derive2 { name="FastCUB"; version="0.0.3"; sha256="11mn7nd629pkxbb5cxw0ahqchl7vjn885f0z6lzs515n54fclkk7"; depends=[CUB Formula]; }; FastGP = derive2 { name="FastGP"; version="1.2"; sha256="120qai1yw3yhwm762zridk78n4qclpivwm9f2hkij4bz851qibqv"; depends=[MASS mvtnorm rbenchmark Rcpp RcppEigen]; }; - FastGaSP = derive2 { name="FastGaSP"; version="0.5.2"; sha256="1i54gxnc27fjgdbcrf2n1s5p6jgadcz2v4g0hq4xay0kfr593a7g"; depends=[Rcpp RcppEigen RobustGaSP]; }; + FastGaSP = derive2 { name="FastGaSP"; version="0.5.3"; sha256="1bc2lc07jka3qjdkl23jkqdgz1495l6p2war9iwkxyfvwx5m130j"; depends=[Rcpp RcppEigen]; }; FastImputation = derive2 { name="FastImputation"; version="2.2.1"; sha256="0jnhspgxas7kswpgw4hihc1y1286w5n8bikwzls7vsik5lj5yac4"; depends=[Matrix]; }; FastJM = derive2 { name="FastJM"; version="1.4.2"; sha256="0h5kywvbwxd13ghgvfgx1sr7k4ywgk4c51xfpr8dvqig9nnvrav8"; depends=[caret dplyr MASS nlme Rcpp RcppEigen statmod survival timeROC]; }; FastKM = derive2 { name="FastKM"; version="1.1"; sha256="0kkrfb98h843yh4n8mvz3y2sp9qkykpabg9w927jb8i230aiy1sq"; depends=[rARPACK]; }; @@ -1795,18 +1835,20 @@ in with self; { FateID = derive2 { name="FateID"; version="0.2.2"; sha256="0sgvaqhqkmmkcsl53bm1jlfpzrvzfb5cz8k513nizfsi638vydlm"; depends=[locfit matrixStats pheatmap princurve randomForest RColorBrewer Rtsne som umap]; }; FaultTree = derive2 { name="FaultTree"; version="1.0.1"; sha256="0abv34y7ms31inrkbc8ss8vnjxki9k49pa722n48irwqczxb328l"; depends=[Rcpp RcppArmadillo]; }; FeaLect = derive2 { name="FeaLect"; version="1.20"; sha256="1dfi0v313x4a4ck98zlk6yr3nfjrdwr5649x9dx3i7yfkypk2k5c"; depends=[lars rms]; }; + FeatureExtraction = derive2 { name="FeatureExtraction"; version="3.5.2"; sha256="0gl2j3kiap00yc8krs9ki9v91qfa082yprnzgr9nyp9c15gggmmx"; depends=[Andromeda checkmate cli DatabaseConnector DBI dplyr jsonlite ParallelLogger pillar readr rJava rlang RSQLite SqlRender]; }; FeatureHashing = derive2 { name="FeatureHashing"; version="0.9.2"; sha256="05cap6251dk3x7802ii33zv41pahng68h7fvx5z8y6ii4vzlgd57"; depends=[BH digest magrittr Matrix Rcpp]; }; FeatureImpCluster = derive2 { name="FeatureImpCluster"; version="0.1.5"; sha256="1ifxw6rd870g258fkyyy3mhghxm7486nvgnp3lh5ih2i1v34dgig"; depends=[data_table ggplot2]; }; FeatureTerminatoR = derive2 { name="FeatureTerminatoR"; version="1.0.0"; sha256="036ip8jm4d5ybyqmvrnjqp4hl8gsmd346737ghipnmmyaml9xfs5"; depends=[caret dplyr e1071 ggplot2 lattice randomForest tibble]; }; FedData = derive2 { name="FedData"; version="4.0.1"; sha256="0shpkv2v5bc09dwqb89xv3df069wgiz3g8y3if2f7kg58ghgg5kn"; depends=[arcgislayers curl dplyr httr igraph lifecycle lubridate magrittr progress purrr readr sf stringr terra tibble tidyr xml2]; }; + FedIRT = derive2 { name="FedIRT"; version="0.1.0"; sha256="0qihs2m1qdp9kfw8f7a76r6cppfi9bxlj2mk4670v4ds2mqyq7xw"; depends=[callr DT ggplot2 httr pracma purrr shiny shinyjs]; }; FeedbackTS = derive2 { name="FeedbackTS"; version="1.5"; sha256="120labhmisw1x1bq8c4bl6l14vayvb9xcm6jsj1awacypgrr2ar2"; depends=[automap gstat mapdata maps proj4 sp]; }; FertBoot = derive2 { name="FertBoot"; version="0.5.0"; sha256="168xfxpb43brfnp6c6b4chhpzb9z0aiqa6fawc8m09an5ggh05jp"; depends=[nls_multstart simpleboot]; }; FertNet = derive2 { name="FertNet"; version="0.1.2"; sha256="0rcxh0hxrmc3hj0gmk2sqd7hqr9dyhv0nx17ipwsg13v7ghvp2h4"; depends=[haven]; }; Fgmutils = derive2 { name="Fgmutils"; version="0.9.5"; sha256="05n8lvx3cs1ckliaj7ni2rbfcrdl7d0pzf9bkwlyd1779h684cxz"; depends=[data_table devEMF ggplot2 gridExtra plyr png sqldf stringr]; }; FiRE = derive2 { name="FiRE"; version="1.0.1"; sha256="08xs4w7d3w4zrymq0sjpz34hmsd4lsd5989r660qdpg3ybpqx8lj"; depends=[BH Rcpp]; }; FiSh = derive2 { name="FiSh"; version="1.1"; sha256="1fcs2y3diszypv7sr4vl75wizcxv0na0pqflmlrizs2w7kyw51p6"; depends=[fda_usc KernSmooth]; }; - FielDHub = derive2 { name="FielDHub"; version="1.3.4"; sha256="08s9snwcvnhrhcqm4csl2pnsp3vxa5vmckmkjhhs4ima51d13f0y"; depends=[blocksdesign config desplot dplyr DT ggplot2 golem htmltools magrittr numbers plotly shiny shinyalert shinycssloaders shinyjqui shinyjs shinythemes turner viridis]; }; - FieldSimR = derive2 { name="FieldSimR"; version="1.2.0"; sha256="1nqdbm93cicvfr757bg5r226swbsy6abg52z7n3jysrkqlicf278"; depends=[ggplot2 interp lattice matrixcalc mbend]; }; + FielDHub = derive2 { name="FielDHub"; version="1.3.7"; sha256="1w0hwqah5h41423sc6ggcwcsxczwy0bs7mc2zy98g1fhsnk3ipfj"; depends=[blocksdesign config desplot dplyr DT ggplot2 golem htmltools numbers plotly shiny shinyalert shinycssloaders shinyjs shinythemes viridis]; }; + FieldSimR = derive2 { name="FieldSimR"; version="1.3.0"; sha256="1yhys0zb6rzd3xx8lwxg6n9dak15nlhyg8a0bkgjfad8ljihlkyj"; depends=[cluster ggplot2 interp lattice mbend]; }; FinAna = derive2 { name="FinAna"; version="0.1.2"; sha256="09svg5z52vv90ih85awgh6ns3pqi789qjm2wi1gb9hbg9v5g7pdv"; depends=[]; }; FinCal = derive2 { name="FinCal"; version="0.6.3"; sha256="1clvnvhpf2krrf8flhmdxmys6ym3xw3v4v07kk1if4xb0dfk9wgy"; depends=[ggplot2 RCurl reshape2]; }; FinCovRegularization = derive2 { name="FinCovRegularization"; version="1.1.0"; sha256="0h3i46s0rpqvgnqgjwqrlrfa3vv5jn2hm6bqc0ijwmrr9f80g4ir"; depends=[quadprog]; }; @@ -1825,7 +1867,7 @@ in with self; { FitUltD = derive2 { name="FitUltD"; version="3.1.0"; sha256="17fj211riybq71k63wjfv2ndc2h46ay5svrac2v5i3b92cb9hkbv"; depends=[ADGofTest assertthat cowplot fitdistrplus ggplot2 MASS mclust purrr]; }; FixSeqMTP = derive2 { name="FixSeqMTP"; version="0.1.2"; sha256="0v1cwq8gapgandm7wiw8p6av6qigydlpmwi6w02p1y7f0hf5ifnp"; depends=[]; }; FixedPoint = derive2 { name="FixedPoint"; version="0.6.3"; sha256="04f3x2akphfm6d84vbf9nfrn281d5hbbnb57n4cwy9hgrs835h6w"; depends=[MASS]; }; - FjordLight = derive2 { name="FjordLight"; version="0.7.0"; sha256="1pswqpglddjdlhrzd4a3mcf3skd65wjjds3a6dinjnj397iqwsaw"; depends=[curl ncdf4 raster]; }; + FjordLight = derive2 { name="FjordLight"; version="0.8"; sha256="031wpxvdbwkj6ay18l594hs0w45amdxd2lppwpa8sx4jyycfwbn9"; depends=[curl ncdf4 raster]; }; FlexDir = derive2 { name="FlexDir"; version="1.0"; sha256="1gb5alv9jsnw0135g63cy757pxhdw6cgwfm8dpcm8dj9zqg10dkm"; depends=[]; }; FlexGAM = derive2 { name="FlexGAM"; version="0.7.2"; sha256="04xbglg9vli18fd24k1qyvbl7svp70k67ig3jiss96fgkgbi6w7c"; depends=[MASS Matrix mgcv scam]; }; FlexParamCurve = derive2 { name="FlexParamCurve"; version="1.5-6"; sha256="0p0c949cdb05r6xnjc7k1i47z809g4mda1l94q7f4dikpnl1h2zd"; depends=[nlme]; }; @@ -1839,6 +1881,7 @@ in with self; { FluMoDL = derive2 { name="FluMoDL"; version="0.0.3"; sha256="0vp3w6hpph6svz8940w9yk9c5iv4n9mj94f9si1ks0xjbi948rqd"; depends=[dlnm mvmeta tsModel]; }; Fluidigm = derive2 { name="Fluidigm"; version="0.2"; sha256="1k9pl0r9pw2879m05qnya91fyl59axwh2z9n0lx7i54admkz8pgc"; depends=[data_table reshape]; }; FlyingR = derive2 { name="FlyingR"; version="0.2.2"; sha256="08jyp4hfb9pydicx4i6vgi94p6pykyi545w8svhar2fwmn1ik955"; depends=[kableExtra knitr Rcpp rmarkdown]; }; + FnR = derive2 { name="FnR"; version="1.1.0"; sha256="0cbnac971yp61khixh2kvwyz4phxz87xswbbkljiry5mdqknpxz2"; depends=[]; }; FoReco = derive2 { name="FoReco"; version="0.2.6"; sha256="07ivfjs836g3k13kfv188lxv300n43vczmkcapxnwiii643y1kw8"; depends=[cli corpcor mathjaxr Matrix osqp]; }; ForIT = derive2 { name="ForIT"; version="2.4.0"; sha256="0kc15b05dp3cybjln49d0ly962s4gayidi0qpb6mcy0qdxvb17lv"; depends=[dplyr ggplot2 magrittr metR purrr RColorBrewer rlang tibble tidyr]; }; ForagingOrg = derive2 { name="ForagingOrg"; version="0.1.0"; sha256="0jsji653xwnmsa1j1h6da99f48kla9yk58z05za7bwk1qw9rbi70"; depends=[PairViz TSP]; }; @@ -1850,12 +1893,12 @@ in with self; { ForestDisc = derive2 { name="ForestDisc"; version="0.1.0"; sha256="1mzlrqjxsja51yyxckj4ym1vpfpq30vlhvs8clrg8jv7kz86hdwk"; depends=[moments nloptr randomForest]; }; ForestFit = derive2 { name="ForestFit"; version="2.2.3"; sha256="0r8hr1hl5js7bc0wggxr7j0psydizlysfgqd5l55i8s79jx9bqhp"; depends=[ars pracma]; }; ForestGapR = derive2 { name="ForestGapR"; version="0.1.7"; sha256="0pj1rq2gqhigrv5v734hj0gmjb6qnipy9crd14qdvzbjhprg4i4z"; depends=[igraph poweRlaw raster sp spatstat_explore spatstat_geom VGAM viridis]; }; - ForestTools = derive2 { name="ForestTools"; version="1.0.1"; sha256="0ghj411sg8054zxipjbbkhsbx7q98ji98p9wk0xzx8mzrdsi04qy"; depends=[imager Matrix plyr Rcpp sf terra]; }; + ForestTools = derive2 { name="ForestTools"; version="1.0.2"; sha256="1c5p4j9kva63hi54zj76vxfydrgkfvszwzzlpn0ippijgrwmcf6j"; depends=[GLCMTextures imager Matrix sf terra]; }; FormShare = derive2 { name="FormShare"; version="1.0.1"; sha256="17wdqjymc33r7r17h3fwi0ixlbpl77k1fm9a6r3gjwxixz8kicx3"; depends=[httr jsonlite R6]; }; FormulR = derive2 { name="FormulR"; version="1.0.0"; sha256="03jyhm2wmgwjd0yj8jbc10xr51rzsgqz0dsxk3qq8kvlbyp4d87v"; depends=[dplyr ggplot2 knitr]; }; Formula = derive2 { name="Formula"; version="1.2-5"; sha256="0p1m9pqcn8ns0sn67js53677q8gwxgbl4bymcn5y2r0dc1s4c9c6"; depends=[]; }; - FossilSim = derive2 { name="FossilSim"; version="2.3.2"; sha256="0wirvjs6gvmgwxwixf1fld7xzq5hyyzfh3fhpglpah8hm744b6hf"; depends=[ape]; }; - FossilSimShiny = derive2 { name="FossilSimShiny"; version="1.1.1"; sha256="05prhgzq1fqh21wp6k1saqm1cwapbs1b7ikn8jj2f7yjwry4nl31"; depends=[FossilSim shiny]; }; + FossilSim = derive2 { name="FossilSim"; version="2.3.3"; sha256="011lvhvlqwra6fzdszd6pq82h9r5fsx98d9afcc1z1ksa87md8vq"; depends=[ape]; }; + FossilSimShiny = derive2 { name="FossilSimShiny"; version="1.1.2"; sha256="1i9ni95qynw96d7v7b1a1wrixl3wm73rz4fzj07kcwb3ypps2b77"; depends=[FossilSim shiny shinyjs TreeSim]; }; FourScores = derive2 { name="FourScores"; version="1.5.1"; sha256="1la9d1hfcmi0zg58yl0a7nj36giagh0fwrc7wxyqdq0c7zf1hfzq"; depends=[]; }; FourWayHMM = derive2 { name="FourWayHMM"; version="1.0.0"; sha256="0zi42d214dq70ypgj8g57fwjbqfih4z0956njpj2739aqsnjq5v4"; depends=[data_table doSNOW foreach LaplacesDemon mclust snow tensor tidyr withr]; }; FourgameteP = derive2 { name="FourgameteP"; version="0.1.0"; sha256="15yn47737768fkjjv8ykc9lw7x58pq44k90d9d4c9hp20zw5f3by"; depends=[]; }; @@ -1869,13 +1912,13 @@ in with self; { FreqProf = derive2 { name="FreqProf"; version="0.0.1"; sha256="1yqn2435l2sghfcv5mma0rv9yqvpa69z8cqqsjlrlbih9gib82d4"; depends=[ggplot2 reshape2 shiny]; }; Fstability = derive2 { name="Fstability"; version="0.1.2"; sha256="0kscdmrs5namvhi112b47c811w0bg9s3xg48mfa566pxwxz1nv45"; depends=[]; }; FunCC = derive2 { name="FunCC"; version="1.0"; sha256="0n8fnrq3grsxxcz1841d3d643nyrwc7y15na1205zxq6rmdjx7wa"; depends=[biclust ggplot2 narray RColorBrewer reshape]; }; - FunChisq = derive2 { name="FunChisq"; version="2.5.3"; sha256="091arn9d42zsa7ky21k77ak0qirz0x7nai72s54mi70nyjn173dk"; depends=[BH dqrng Rcpp Rdpack]; }; - FunWithNumbers = derive2 { name="FunWithNumbers"; version="1.1.1"; sha256="1342n3gsrlk70njj45vxpk5sl467pxmsixkmvi4s9aim6d9my7pn"; depends=[gmp Rmpfr]; }; + FunChisq = derive2 { name="FunChisq"; version="2.5.4"; sha256="0y5minhjas4rihg8c4lvy2f323makza28p20c303rpzh4k50diji"; depends=[BH dqrng Rcpp Rdpack]; }; + FunWithNumbers = derive2 { name="FunWithNumbers"; version="1.2"; sha256="0p3czcc6v1wwdbdfmar1q0z4b7r75p39zd2bw0dl14wcn7fn59sq"; depends=[bigBits gmp Rmpfr]; }; FuncDiv = derive2 { name="FuncDiv"; version="1.0.0"; sha256="19jfxy9mhhsfr2mf3l9d125swy20qcyxfqd2fk9m6cly9ajzggza"; depends=[ape collapse data_table parallelDist Rcpp RcppArmadillo RcppParallel RcppXPtrUtils]; }; FuncMap = derive2 { name="FuncMap"; version="1.0.10"; sha256="0iaay6qz9a2s77xjfpp7wm37y7xwnvmlw6s5k5riccmqzc6dcjs7"; depends=[mvbutils]; }; FuncNN = derive2 { name="FuncNN"; version="1.0"; sha256="0kcr7c54igzi0imp8w9a0mnrqaa2qcls9777scsjz5sbcxdy3if3"; depends=[caret doParallel fda fda_usc flux foreach ggplot2 ggpubr keras Matrix pbapply reshape2 tensorflow]; }; FunctanSNP = derive2 { name="FunctanSNP"; version="0.1.0"; sha256="1f1zdwr9pmpscb8va9gd7yl0vyxmv0hy6swfrh7074whvs0dkbn7"; depends=[caret fda funData glmnet lava MASS]; }; - FunnelPlotR = derive2 { name="FunnelPlotR"; version="0.4.2"; sha256="0lsbxl4ilgszd3q8h00skbnl36q47ghi7afbcmbjqdqzkpl8yfig"; depends=[dplyr ggplot2 ggrepel scales]; }; + FunnelPlotR = derive2 { name="FunnelPlotR"; version="0.5.0"; sha256="0h3nq5dd14n49zzgwaqqsh5qdx1xcsgskzqsajz1qpy86bm4ji89"; depends=[dplyr ggplot2 ggrepel rlang scales]; }; FusionLearn = derive2 { name="FusionLearn"; version="0.2.1"; sha256="070prpxz1y5lzi4hjxbv4h3p4hskrm51d7p3yhhg71p8rw1mcla1"; depends=[]; }; Fuzzy_p_value = derive2 { name="Fuzzy.p.value"; version="1.1"; sha256="13h6armh9g57zqxyjqk6mq81jlfqxqrg2sb5p9rrhslka5m01zis"; depends=[FuzzyNumbers]; }; FuzzyAHP = derive2 { name="FuzzyAHP"; version="0.9.5"; sha256="02sx32vlvnr0fzw8rf0f6hiikqn7xp1ibpqzxhxwv8yij2qkiyci"; depends=[MASS]; }; @@ -1885,7 +1928,7 @@ in with self; { FuzzyM = derive2 { name="FuzzyM"; version="0.1.0"; sha256="12arx4flgykdkynnj341pgpd85k7xh6491bv9v9da63w6rp0kdm6"; depends=[]; }; FuzzyNumbers = derive2 { name="FuzzyNumbers"; version="0.4-7"; sha256="12xficdsln31rzfziycw6z0912cgrq6mkvz3f1nbli9lzqrypxzl"; depends=[]; }; FuzzyNumbers_Ext_2 = derive2 { name="FuzzyNumbers.Ext.2"; version="3.2"; sha256="0gldq0bg1p1vmrn35prha44d7lyymz0jzshdyp2c5rx433mny7h5"; depends=[FuzzyNumbers]; }; - FuzzyPovertyR = derive2 { name="FuzzyPovertyR"; version="2.0.1"; sha256="1v5vnk8r7vhwgmp5hbpwzn0cks4i8z3jm7r3rbbdfjjf4fba2vkd"; depends=[dplyr ecp ggplot2 reshape2 tidyr]; }; + FuzzyPovertyR = derive2 { name="FuzzyPovertyR"; version="2.1.0"; sha256="0nqjiz8f0vqcmlcqva5zr971rrcfbw6gak22y2wqbila0za6asfv"; depends=[dplyr ecp ggplot2 tidyr]; }; FuzzyQ = derive2 { name="FuzzyQ"; version="0.1.0"; sha256="1camdw7rnzf02nqjlmkr7mqpc38dafq9nw8x7pzwi1lh5xwv5dia"; depends=[cluster]; }; FuzzyR = derive2 { name="FuzzyR"; version="2.3.2"; sha256="0d0zf8diw7m10zfx0r5zg5arhf4a90sva77h6rvfywixldwrnk7s"; depends=[plyr shiny]; }; FuzzyResampling = derive2 { name="FuzzyResampling"; version="0.6.3"; sha256="1gic7la5ks7v37f3h4azazz4sv650sp6pl199wk4021blkah5r56"; depends=[]; }; @@ -1898,12 +1941,12 @@ in with self; { GA = derive2 { name="GA"; version="3.2.4"; sha256="1gc1n2xdzrkc9cvrm6a50c9xpwvf0isdgvs1qpm8x1afacw6d7z5"; depends=[cli crayon foreach iterators Rcpp RcppArmadillo]; }; GABB = derive2 { name="GABB"; version="0.3.8"; sha256="16gdg5yvzlvic3qc9ya68xkbx55jg7lvlnqjry9x4c5hvggywzvl"; depends=[dplyr egg ggforce ggplot2 ggplotify ggpubr ggrepel Hotelling pheatmap tidyr vegan]; }; GACFF = derive2 { name="GACFF"; version="1.0"; sha256="0lhjzb6cj8838dh4423929z7bwpa6cv3dn84rccwi3382vsq9g2c"; depends=[]; }; - GAD = derive2 { name="GAD"; version="1.1.1"; sha256="0lyrw0d7i7yn1wkqlbf3rg3dnijfwsjn3kdbsg19hmvwq6qpsak2"; depends=[matrixStats R_methodsS3]; }; + GAD = derive2 { name="GAD"; version="2.0"; sha256="1qb735hbqv00yz0xaw0k3vpg7j9lqbbkzkqdys25n64ji59qr33x"; depends=[matrixStats]; }; GADAG = derive2 { name="GADAG"; version="0.99.0"; sha256="1ycg48idrq2yrk1fxs16yl5wwg3kbfki8xppmh311rrzf75c6z4g"; depends=[igraph MASS Rcpp RcppArmadillo]; }; GAGAs = derive2 { name="GAGAs"; version="0.6.2"; sha256="04gfxhvbb9mm2rl6n2kfch8d9ggzblr5ch2p561x39dgwmwbpc2r"; depends=[Rcpp RcppEigen survival]; }; GAGBLUP = derive2 { name="GAGBLUP"; version="1.0"; sha256="192r4fr3idl78g9vllb7hdvlrfkghh1airblb94c1mjyrjkj2hxa"; depends=[doParallel foreach GA]; }; GAIPE = derive2 { name="GAIPE"; version="1.1"; sha256="035x5x8ig85q51bf4qgj5n5qq6clwjp4xk5bf35gswn7qxd13yls"; depends=[]; }; - GALLO = derive2 { name="GALLO"; version="1.4"; sha256="0mpm7z77s072d8yv1zl2w7wganz190vk757jklkz2g7ajs9k6yz3"; depends=[circlize data_table doParallel dplyr DT foreach ggplot2 igraph lattice RColorBrewer rtracklayer stringr unbalhaar visNetwork webshot]; }; + GALLO = derive2 { name="GALLO"; version="1.5"; sha256="0idzzkgxfr5im9p7xk7f4iph445rp8y2dzdzddm4x9i4fnh5hkwn"; depends=[circlize CompQuadForm data_table doParallel dplyr DT foreach ggplot2 igraph lattice Matrix RColorBrewer rtracklayer stringr unbalhaar visNetwork webshot]; }; GAMens = derive2 { name="GAMens"; version="1.2.1"; sha256="1z10wxcg277fra2lch464l0kb02lspw9qr1i2wmq11wcz0k9qnl8"; depends=[caTools gam mlbench]; }; GANPA = derive2 { name="GANPA"; version="1.2"; sha256="1c2yvh6sqx75hg0lsmflgd9mdic8imysv8dn46g4abvfwjhxsafp"; depends=[GANPAdata]; }; GANPAdata = derive2 { name="GANPAdata"; version="1.0"; sha256="0mhdadl7zgsacn59ym42magg3214k1xhabwn78fv7kgccszcgc86"; depends=[]; }; @@ -1911,7 +1954,6 @@ in with self; { GARCHSK = derive2 { name="GARCHSK"; version="0.1.0"; sha256="0fwzv8js3d9klbzs58m946k7q50yxpf0cxia3r2z2gy85xphrsm0"; depends=[Rsolnp]; }; GARCOM = derive2 { name="GARCOM"; version="1.2.2"; sha256="0fz8i4zidw47p6zpb83988k6rwb12scv90n1lvy2jb1fq29zp63q"; depends=[data_table vcfR]; }; GAS = derive2 { name="GAS"; version="0.3.4"; sha256="014b2y9qrv44j5v559bnw7yiacs9aarsgpbrj3clxm4n0srhv843"; depends=[cubature MASS numDeriv Rcpp RcppArmadillo Rsolnp xts zoo]; }; - GAabbreviate = derive2 { name="GAabbreviate"; version="1.3"; sha256="0cq6bg3w0ji44rsz1p4j17fk0jg8rafbjixwi3fjdndc3yd874r5"; depends=[GA psych]; }; GAparsimony = derive2 { name="GAparsimony"; version="0.9.5"; sha256="1l3x6m7phbin6ba6rclljzym9zgx9nskz65ggkg0ij24pz5h7y51"; depends=[foreach iterators]; }; GB2 = derive2 { name="GB2"; version="2.1.1"; sha256="05hvyyjlxckhgqipssb7qkfqv3dq202jpjyp9y7hgmka0vsix2yr"; depends=[cubature hypergeo laeken numDeriv survey]; }; GB2group = derive2 { name="GB2group"; version="0.3.0"; sha256="1dbyc7izyggfrsq2gj7rwff5qjyy6bx6ip09xvbj73xqczv8fkcd"; depends=[GB2 ineq minpack_lm numDeriv]; }; @@ -1928,10 +1970,11 @@ in with self; { GDAdata = derive2 { name="GDAdata"; version="0.93"; sha256="13ks97i289rc4i7gpqrifwbj0m9rx8csjhnfg8mad10qmjwz7p8b"; depends=[]; }; GDAtools = derive2 { name="GDAtools"; version="2.1"; sha256="1561zzw177kc7x3hiqzi7qm1yvczx8lzjb2j7d45zgwgz96v9vf8"; depends=[descriptio FactoMineR ggplot2 ggrepel rlang]; }; GDELTtools = derive2 { name="GDELTtools"; version="1.7"; sha256="0v368chcgqnrfy2isy8z7gl0xizafhxlcd29gr89iblhrzwmssid"; depends=[datetimeutils dplyr plyr stringr]; }; + GDILM_SIR = derive2 { name="GDILM.SIR"; version="1.2.1"; sha256="08bcxnv5vwshj5hsxs6z8sny8hkb65aihcijlns0zinsdf685rgl"; depends=[MASS Matrix mvtnorm numDeriv psych]; }; GDINA = derive2 { name="GDINA"; version="2.9.4"; sha256="10bbwr4q6cp36dnwhddviqg7f00h92gdmvblw0lxn72v4869vhn1"; depends=[alabama ggplot2 MASS nloptr numDeriv Rcpp RcppArmadillo Rsolnp shiny shinydashboard]; }; - GDPuc = derive2 { name="GDPuc"; version="0.11.1"; sha256="1y91iivbfwrnjy9wg6dm9v0hd23fgqmry60sw2a2f5n0hflbgafc"; depends=[cli crayon dplyr glue lifecycle magrittr rlang tibble tidyr tidyselect withr]; }; + GDPuc = derive2 { name="GDPuc"; version="1.0.0"; sha256="0in9nywf4nq8ivr142z15srf71rwm5mxnf8s7dp9fxl6axmizjs1"; depends=[cli crayon dplyr glue lifecycle magrittr rlang tibble tidyr tidyselect withr]; }; GDSARM = derive2 { name="GDSARM"; version="0.1.1"; sha256="0id3z450prnrd6rdcv4xaizmjkdhjv8vdbpbnpniaml66kqsadvh"; depends=[lpSolve]; }; - GE = derive2 { name="GE"; version="0.4.2"; sha256="0fba4l6497r9lxc5jdi6s9nsjgbqb2x5f9nphx7c9ar10rjqgqqy"; depends=[CGE data_tree DiagrammeR]; }; + GE = derive2 { name="GE"; version="0.4.5"; sha256="0fnf6z08989g132p0prif49zqa3a399wq0wzz7n964cqvz5g3j5f"; depends=[CGE data_tree DiagrammeR]; }; GEC = derive2 { name="GEC"; version="0.1.0"; sha256="1kcczyih3lg1cc6nppxbpz1zkq9priy8xwapd6kvkzmyw8npback"; depends=[mistr]; }; GEEaSPU = derive2 { name="GEEaSPU"; version="1.0.2"; sha256="02pwjqd94kranc1f69bx9rzk27kchavhvhl9fygjhrr40nwq3pbg"; depends=[gee Rcpp RcppArmadillo]; }; GEEmediate = derive2 { name="GEEmediate"; version="1.1.4"; sha256="1x0r2qcyd9hrhkws5zi0pjdc40w8wal3jpvvajj3cr8c1r8dpfzz"; depends=[gee]; }; @@ -1943,10 +1986,11 @@ in with self; { GENMETA = derive2 { name="GENMETA"; version="0.2.0"; sha256="11wlcnj919jws62ngf29gr2p0shdlm917hkz5iwfss1m8gcbfjnl"; depends=[magic MASS Matrix pracma]; }; GEOmap = derive2 { name="GEOmap"; version="2.5-5"; sha256="0gs8zd8rcdxgz0pm3nlynf4qy8axfsv7syagb22zi8yd4s4sf5wa"; depends=[fields MBA RPMG sf]; }; GESE = derive2 { name="GESE"; version="2.0.1"; sha256="0h3s2sbnv5wilr2mj6bnl2892p16pxrs341gg6jql1a540p669sk"; depends=[kinship2]; }; - GET = derive2 { name="GET"; version="1.0"; sha256="0g5cb9a8bhffxjippam3dnh0czml1cbp3vzq5xlxpymjk4x0rgpm"; depends=[cluster ggplot2 gridExtra viridisLite]; }; - GETdesigns = derive2 { name="GETdesigns"; version="1.1.0"; sha256="1rc8vcpfv240qmg3xgqx1rlygw7l3hjkh1napj3pc9j6ffpyyk2a"; depends=[]; }; + GET = derive2 { name="GET"; version="1.0-2"; sha256="0z977w3chrwr9bxlx7l45qqc7nj2z5gx886ybjxclh6s5zgc2d9f"; depends=[cluster ggplot2 gridExtra viridisLite]; }; + GETdesigns = derive2 { name="GETdesigns"; version="1.2.0"; sha256="1kd08vdra3akdkvk6n9i6w4m2qmlnkjqjnssdn8f317vwbhjcmf3"; depends=[]; }; GEVACO = derive2 { name="GEVACO"; version="1.0.1"; sha256="0zkan4w96g3qc1hgla90mh32b55bk58gax095p4nxrfi46f8w3rf"; depends=[nlme RLRsim]; }; GEVcdn = derive2 { name="GEVcdn"; version="1.1.6-2"; sha256="0vmm9fhyrk5m0zwy7fpq5j9zinws0gn2saf4j9plqc9gj1gphjn0"; depends=[]; }; + GEmetrics = derive2 { name="GEmetrics"; version="1.0.0"; sha256="1is78g8jm551bc7qb61jm6c9qcqygbh4nxj89sfccbz08k1xljyl"; depends=[BGLR]; }; GFA = derive2 { name="GFA"; version="1.0.5"; sha256="1ldpa12awb5d8mn25wn34nclqc4fyq690siq0wdq4c8fzgpv2xad"; depends=[]; }; GFD = derive2 { name="GFD"; version="0.3.3"; sha256="1d40fwk367ww544z25jwlx2kdm1gv7y6ijl8vnpi198n7k1hdgpl"; depends=[magic MASS Matrix plotrix plyr shiny shinyjs shinythemes shinyWidgets tippy]; }; GFDmcv = derive2 { name="GFDmcv"; version="0.1.0"; sha256="094b41sx3czz9sjqhvxggkmrdcwfwv8ww9k4286vzd055jbvk5hh"; depends=[doParallel foreach HSAUR MASS Matrix mvtnorm Rcpp RcppArmadillo stringr]; }; @@ -1958,8 +2002,8 @@ in with self; { GFisher = derive2 { name="GFisher"; version="0.2.0"; sha256="0ilvl8y118iicq5anzcsm94yz3bq890mb627dxi6z61cqazjbbai"; depends=[Matrix mvtnorm]; }; GGClassification = derive2 { name="GGClassification"; version="0.1"; sha256="03wis5ng2mnfhp33xrag8xbmvjagzr1909a6x94wv7s2spji00rp"; depends=[Rcpp RcppEigen]; }; GGEBiplots = derive2 { name="GGEBiplots"; version="0.1.3"; sha256="0h7irlmq283bx1hlqyv8bi228kd6xkc7sdw6nq18v3s7b0a9bhcm"; depends=[ggforce ggplot2 scales]; }; - GGIR = derive2 { name="GGIR"; version="3.0-9"; sha256="1xvgnhlf6hsx9v5ljsxg6k6l808mdp7d71kdx6qxm306mbrby33k"; depends=[ActCR data_table doParallel foreach GGIRread ineq irr lubridate psych read_gt3x signal unisensR zoo]; }; - GGIRread = derive2 { name="GGIRread"; version="0.3.3"; sha256="01indzna0z8rlcc29b4hfssn0xl07brwxpk3ysdanla32qa67slc"; depends=[bitops matlab Rcpp]; }; + GGIR = derive2 { name="GGIR"; version="3.1-1"; sha256="1vmx4bmjsk0sdxpafmpsiiiv0z4pyi6lfsxbb9mrqmhkqdhp2yrf"; depends=[ActCR data_table doParallel foreach GGIRread ineq irr lubridate psych read_gt3x signal unisensR zoo]; }; + GGIRread = derive2 { name="GGIRread"; version="1.0.1"; sha256="0kad21xqwb2c4phg4mq7480qvki5frn2c2slfbcfj9paxxl4ha16"; depends=[bitops matlab Rcpp]; }; GGMncv = derive2 { name="GGMncv"; version="2.1.1"; sha256="0lih9dyb5aqrawhiy2vhv63b132hhzq6zq0x6rbrhy8kbkldhigr"; depends=[GGally ggplot2 glassoFast MASS mathjaxr network numDeriv pbapply Rcpp RcppArmadillo Rdpack reshape sna]; }; GGMnonreg = derive2 { name="GGMnonreg"; version="1.0.0"; sha256="1bhqk172ddc7xq1hqj1i6q8np6jvmf2xypvd8kp3w1bcsafsbms8"; depends=[bestglm corpcor doParallel foreach GGally GGMncv ggplot2 MASS Matrix network poibin psych Rdpack sna]; }; GGMridge = derive2 { name="GGMridge"; version="1.4"; sha256="179g82w7vrbkvq0b8bcaakcjhqz1gsyc2qyh70ldglbj0sj5yh4m"; depends=[MASS mvtnorm]; }; @@ -1974,6 +2018,7 @@ in with self; { GIFT = derive2 { name="GIFT"; version="1.3.2"; sha256="0ngrci818f0k21aiy7dnzpip33sikjf2kp7j9l3r7mwp35h6q2qd"; depends=[ape curl dplyr httr2 jsonlite phytools purrr sf tidyr]; }; GIFTr = derive2 { name="GIFTr"; version="0.1.0"; sha256="101vr2qasky8hnxp5i3lhlnymwzciypqwvhpl6mrr0r0czgpcz2f"; depends=[glue stringr]; }; GIGrvg = derive2 { name="GIGrvg"; version="0.8"; sha256="09n0nhsv3v61asfzghzxa9sr3ryl25mlvj73gk9ql9wlrynd3wrl"; depends=[]; }; + GIMMEgVAR = derive2 { name="GIMMEgVAR"; version="0.1.0"; sha256="1r5j5s8pmjrndr4qsi4ivrqfyj9rlmw72ya850ig387z9gl84n47"; depends=[graphicalVAR here png qgraph]; }; GISINTEGRATION = derive2 { name="GISINTEGRATION"; version="1.0"; sha256="1nl1cbjcjkyd67i0qk0skbrk9ya9fydw9iiq4ip11bjg86661jjb"; depends=[RecordLinkage sf shapefiles stringr syn tm]; }; GISSB = derive2 { name="GISSB"; version="1.1"; sha256="0clhch4xvklrmk7h6b7vz83zzlj5r1lzrszy73agmpdbs5cax5sy"; depends=[cppRouting dplyr here httr igraph leaflet magrittr nabor purrr RCurl reshape2 rlang sf stringr tibble tidygraph tidyselect]; }; GInSARCorW = derive2 { name="GInSARCorW"; version="1.15.8"; sha256="0hxcaixr8f3pq4kpzhfrbm7blvkq6sk3pz63bfjy6n1lhlashb13"; depends=[circular raster sp]; }; @@ -2015,14 +2060,14 @@ in with self; { GOxploreR = derive2 { name="GOxploreR"; version="1.2.7"; sha256="0878czn9fyjh52a8qwmffl47x1jy8pw4m35wzicxj7k7ck58ws9k"; depends=[annotate biomaRt dplyr ggplot2 ggraph GO_db gontr igraph network]; }; GPArotateDF = derive2 { name="GPArotateDF"; version="2023.11-1"; sha256="161mml6pwcqza6asn7315lqkn69k9k1l9rwa59f9m68v427a5lr0"; depends=[GPArotation]; }; GPArotation = derive2 { name="GPArotation"; version="2024.3-1"; sha256="1njl4qg5jgmx14r41q1kzfmhf4zga3yjkig0h7ar35bq56pmgxl8"; depends=[]; }; - GPBayes = derive2 { name="GPBayes"; version="0.1.0-5.1"; sha256="1yi1xc27kdylw23nc84phnmyzhlxca20pcjvlwxykpmkag81qygw"; depends=[Rcpp RcppEigen RcppProgress]; }; - GPCERF = derive2 { name="GPCERF"; version="0.2.3"; sha256="0zl4g5q4pd503wiw0pkj2233fdhfv14ydr8q0c97agmng3rp8kv6"; depends=[cowplot ggplot2 logger MASS Rcpp RcppArmadillo Rfast rlang spatstat_geom SuperLearner wCorr xgboost]; }; + GPBayes = derive2 { name="GPBayes"; version="0.1.0-6"; sha256="0qrpybxvwajmwq8ybllk298wbc6q6h937b93q2az5d0bw4nqsiq2"; depends=[Rcpp RcppEigen RcppProgress]; }; + GPCERF = derive2 { name="GPCERF"; version="0.2.4"; sha256="0nzfd0sz73sb4903vpgix9m767np1prcmi3m1y3pq6dzmxmqzh6a"; depends=[cowplot ggplot2 logger MASS Rcpp RcppArmadillo Rfast rlang spatstat_geom SuperLearner wCorr xgboost]; }; GPCMlasso = derive2 { name="GPCMlasso"; version="0.1-7"; sha256="0hlhm780xyila4idk5r87pw046xi3lxhhpr0a22smhf4klvnlfgc"; depends=[caret cubature ltm mirt mvtnorm Rcpp RcppArmadillo statmod TeachingDemos]; }; GPFDA = derive2 { name="GPFDA"; version="3.1.3"; sha256="0s5jq2vmz02yr1wd79s6h5c8rvpbkdlnhdy5yfckk5nxddabcymb"; depends=[fda fda_usc fields interp mgcv Rcpp RcppArmadillo]; }; GPGame = derive2 { name="GPGame"; version="1.2.0"; sha256="1xxilr1ify9ip3vs000jawxplcbf1vqli40frhnwwjqf01kj8jq5"; depends=[DiceDesign DiceKriging GPareto KrigInv MASS matrixStats mnormt mvtnorm Rcpp]; }; GPIC = derive2 { name="GPIC"; version="0.1.0"; sha256="1v44hkzf3wh09j5pcfmsc8h5jzmqa501bwkmdwwjb7pz64976r23"; depends=[]; }; GPL2025 = derive2 { name="GPL2025"; version="1.0.1"; sha256="0af42g3v91fbcmla2yq98v8rd4ifaznb1xvw7ny41r3843d8appc"; depends=[dplyr]; }; - GPLTR = derive2 { name="GPLTR"; version="1.4"; sha256="0g8h94fc9c8w86z302f5ld6j3rzh6is7z5rjxr1v4arblpibxzr3"; depends=[rpart]; }; + GPLTR = derive2 { name="GPLTR"; version="1.5"; sha256="0rlaryw8l1hj15x9s57w7rif063njcc72l42bpc9lm8r5knjyjpb"; depends=[rpart]; }; GPM = derive2 { name="GPM"; version="3.0.1"; sha256="01vd68w5pnwhng83x5i0k9c5fhsn9siyzzndkvkmpis4mjm42sgv"; depends=[doParallel foreach iterators lattice lhs pracma randtoolbox Rcpp RcppArmadillo]; }; GPP = derive2 { name="GPP"; version="0.1"; sha256="1qryza8mamwzwqiy31drf176w192ksw34kpsa0wc8gsp3ylkm2f9"; depends=[rstan]; }; GPRMortality = derive2 { name="GPRMortality"; version="0.1.0"; sha256="0k5pfyl7r5vsac927aqx19lz93vyk5l3ydqkazn2hwwaw1lh2wav"; depends=[rstan]; }; @@ -2032,7 +2077,7 @@ in with self; { GPareto = derive2 { name="GPareto"; version="1.1.8"; sha256="1grs7pxxl9nymmg1qx8a7ln25c2bz47bv06pahq7ackhsh6zlvk9"; depends=[DiceDesign DiceKriging emoa KrigInv ks MASS pbivnorm pso randtoolbox Rcpp rgenoud rgl]; }; GPfit = derive2 { name="GPfit"; version="1.0-8"; sha256="05mpiyi2vxv0wqp422n1mnxa8msc4daq40cwpnpngbcwqhlgqkby"; depends=[lattice lhs]; }; GPoM = derive2 { name="GPoM"; version="1.4"; sha256="01j9v4a8ahfddd2mibqs44wjv5q7vm1rsa3nbswfm8x0vg7qv70c"; depends=[deSolve float rgl]; }; - GPvam = derive2 { name="GPvam"; version="3.0-9"; sha256="15y17z1l23n7kyrgn3q8br70ym1jdqkkysrhkal2flci70b1c7ij"; depends=[Matrix numDeriv Rcpp RcppArmadillo]; }; + GPvam = derive2 { name="GPvam"; version="3.1-0"; sha256="0mmwg5m85rzaaj8wdxsdn1yqpl08pr3ydmxpfwmm2f7xw0k2k29g"; depends=[Matrix numDeriv Rcpp RcppArmadillo]; }; GPvecchia = derive2 { name="GPvecchia"; version="0.1.7"; sha256="1dvixffrn3vz98n8p7vqqr9l77m8n1gij5za8z2hfpg78pipa0mi"; depends=[BH fields FNN GpGp Matrix Rcpp RcppArmadillo sparseinv]; }; GRAPE = derive2 { name="GRAPE"; version="0.1.1"; sha256="1jzvf45ch8x8f2x9kmvv02xz9bix5vplh8143vc4m1yyq42x09c6"; depends=[]; }; GRCRegression = derive2 { name="GRCRegression"; version="1.0"; sha256="05ll1ncxqnkyp5231xlpkmzd07m2rnmcdzcc68mq1gqfcahakdl1"; depends=[MASS pracma]; }; @@ -2040,7 +2085,7 @@ in with self; { GRCdesigns = derive2 { name="GRCdesigns"; version="1.0.0"; sha256="0fa1c9sf2sb085izcimwg78s7a7zgflncx0wbzhh8i8vfmi5xvi9"; depends=[]; }; GREENeR = derive2 { name="GREENeR"; version="1.0.0"; sha256="18li2xs12gi4c1wsjxdqbjfyw81xsmgnljdrlgj9fdw91w3f9bzw"; depends=[classInt data_table dplyr FME ggplot2 gridExtra magrittr networkD3 parallelly reshape2 sf tidyselect tmap]; }; GREMLINS = derive2 { name="GREMLINS"; version="0.2.1"; sha256="16l2mzd6xm2yk1hs5333w9lfz7iymkwmi3k80yxal9dxqh5hajkb"; depends=[aricode blockmodels igraph pbmcapply R6]; }; - GRIDCOPULA = derive2 { name="GRIDCOPULA"; version="1.0.0"; sha256="02xyklc8648z3c3pfd3xshlfn5wpkyglc84dqh8sbpba7017gcvr"; depends=[fields ggplot2 limSolve pracma reshape2 Rsolnp]; }; + GRIDCOPULA = derive2 { name="GRIDCOPULA"; version="1.0.1"; sha256="0d8zibd27z0krn564ba906zlvnb1fx4mfvhpii7pxr0pzjir2a9c"; depends=[evmix fields ggplot2 limSolve pracma reshape2 Rsolnp]; }; GRNNs = derive2 { name="GRNNs"; version="0.1.0"; sha256="1c36km6g4fcsvpirlh88fl3zq9pdpdyfilahfx949salj0gnqsn6"; depends=[cvTools rdist scales vegan]; }; GROAN = derive2 { name="GROAN"; version="1.3.1"; sha256="1g6n00gnz47w06wkx0sha97qxxyhc8n2y8zaagqx7krgzx7lkha3"; depends=[plyr rrBLUP]; }; GRS_test = derive2 { name="GRS.test"; version="1.2"; sha256="1g560n81kqf81n1z3s4yxl24r386q21avjknz6msqzp4xhxhr4l6"; depends=[]; }; @@ -2048,7 +2093,7 @@ in with self; { GRSxE = derive2 { name="GRSxE"; version="1.0.1"; sha256="0wzaddhqxygw7p81ni2dl2fwr5kwb4qjar126n9mq8n6bkbvq2yk"; depends=[glmnet ranger]; }; GRTo = derive2 { name="GRTo"; version="1.3"; sha256="1xkcx2agvrpfnmplgaqx70vz303v8rhwnxdyr4hmdlf4h92lbv8i"; depends=[bootstrap]; }; GRelevance = derive2 { name="GRelevance"; version="1.0"; sha256="1v1zcsk563cs6c1xn1qzm4v3yydmpr59hkz40xafkq4jbq9k2s9g"; depends=[MASS mvtnorm philentropy]; }; - GSA = derive2 { name="GSA"; version="1.03.2"; sha256="1f1mrxxdbdlnibgav6nsvbpniz2x3km2svc0hf43spb4zicn0z8p"; depends=[]; }; + GSA = derive2 { name="GSA"; version="1.03.3"; sha256="0b18b8n6dh3yx9vp5b7ym25590x9qrcbprs5vjnkj0zlj1hphnal"; depends=[]; }; GSA_UN = derive2 { name="GSA.UN"; version="1.0.0"; sha256="1jj9scv9x32zb24114a4sa43xvjmf3gmq8lnfablldjn7p7yx9cv"; depends=[e1071]; }; GSAQ = derive2 { name="GSAQ"; version="1.0"; sha256="1p1rab2dlh4h9bfg464nhx708p7kc4q01ifccdh5756lq1qh2kzv"; depends=[]; }; GSAfisherCombined = derive2 { name="GSAfisherCombined"; version="1.0"; sha256="1xhq5nc3kbz3ml9qkdxm6m0c65fybabfhgqlwii2105jl0ll7qy5"; depends=[]; }; @@ -2058,13 +2103,14 @@ in with self; { GSED = derive2 { name="GSED"; version="2.6"; sha256="1k8axyzk55d8idn65qj3gxqjsk27n2r0q78v7524mg8n3fhxs0wj"; depends=[memoise R_utils rootSolve survival]; }; GSM = derive2 { name="GSM"; version="1.3.2"; sha256="04xjs9w4gaszwzxmsr7657ry2ywa9pvpwpczpvinxi8vpj347jbb"; depends=[gtools]; }; GSMX = derive2 { name="GSMX"; version="1.3"; sha256="1n1d7rixj14ari46snsmi48qfmy00ihmzvayk3hkrp2d2d0xi2gh"; depends=[MASS]; }; - GSNA = derive2 { name="GSNA"; version="0.1.4.2"; sha256="0id71ik7s1hl57nzy3qzrdszvy3a83gf3gx8xwdswy53r6yiijf2"; depends=[circlize dendextend dplyr DT ggplot2 igraph Matrix psych raster Rcpp stringi stringr tibble tidyr tmod withr]; }; - GSODR = derive2 { name="GSODR"; version="3.1.10"; sha256="1fb9m9j0x4bv3pcnmndy25lliwagivw88nsm7j49rv3sbyhr439v"; depends=[countrycode curl data_table R_utils]; }; + GSODR = derive2 { name="GSODR"; version="4.0.0"; sha256="1c8hsan8jsqz303pwd8bm4xy98qwfdj1nf96dybq0c6yg101fhvf"; depends=[countrycode curl data_table R_utils]; }; GSSE = derive2 { name="GSSE"; version="0.1"; sha256="034mmxa6kjq5kgikhb5q75viagz5ck9irrjbxm26zq9099qxm13b"; depends=[Iso zoo]; }; - GSSTDA = derive2 { name="GSSTDA"; version="0.1.3"; sha256="17mrdp5gy21mzb1k9czzzpn7ybymwn0m8c2srwv7d124mp8i3qpz"; depends=[circlize cluster ComplexHeatmap devtools survival visNetwork]; }; + GSSTDA = derive2 { name="GSSTDA"; version="1.0.0"; sha256="0ah19qf6lfzlw52w43b5qszsxh2yvpz7vnspgvj4qidysbxkxd3q"; depends=[circlize cluster ComplexHeatmap devtools survival visNetwork]; }; GSelection = derive2 { name="GSelection"; version="0.1.0"; sha256="052vh1haxlzbh3c5i24nrwphapik1y8ribmh6q4axd447ggc0ff9"; depends=[gdata penalized SAM]; }; GSparO = derive2 { name="GSparO"; version="1.0"; sha256="0xna2crxqwy8fj0s79rxbdcaz9x912rp1vdwqv1557fsnmfv2yf0"; depends=[ggplot2 ThreeWay]; }; GTDL = derive2 { name="GTDL"; version="1.0.0"; sha256="1dryw7d9qnsa3wibk9kgkldwb660arzdw024p62a123v7i932jz0"; depends=[survival]; }; + GUD = derive2 { name="GUD"; version="0.0.5"; sha256="0h8ihaph1lwnzzayn3ks09xvjxg2c57048az29zmc2paxbz0mwq3"; depends=[BH MASS posterior Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; + GUEST = derive2 { name="GUEST"; version="0.1.0"; sha256="1fbad8kf0l69mzagiagf7i5dk7sq8a8qazfxywzppz7xy15acy42"; depends=[GGally network XICOR]; }; GUIDE = derive2 { name="GUIDE"; version="1.2.7"; sha256="0klaczmn3jnlzyh45yaqlc897irjfk467f4w03awmflaiwan3h6v"; depends=[rpanel tkrplot]; }; GUILDS = derive2 { name="GUILDS"; version="1.4.6"; sha256="0rjlx13shzmamxzqng0qjl5kwzg111lq245y9z6axb3al3ly59ij"; depends=[nloptr pracma Rcpp]; }; GUIProfiler = derive2 { name="GUIProfiler"; version="2.0.1"; sha256="10m4d7f2rhw6cmkrnw3jh4iqlkfphf4v7mpfwzw17laq0ncmsx5r"; depends=[graph MASS Nozzle_R1 proftools Rgraphviz rstudioapi]; }; @@ -2074,14 +2120,14 @@ in with self; { GWASExactHW = derive2 { name="GWASExactHW"; version="1.2"; sha256="1xzcvmbh27ibd7g9zlqyp215q4yfkhdypcvm5gjkvw1qhd3pl4yk"; depends=[]; }; GWASbyCluster = derive2 { name="GWASbyCluster"; version="0.1.7"; sha256="0ivlkxbh8m23vbnjfmhk0vfczd5b8lzy9w4gm1m6jpvdm40kn70x"; depends=[Biobase limma rootSolve snpStats]; }; GWASinlps = derive2 { name="GWASinlps"; version="2.2"; sha256="1q5gaam554r2wxwsdgxjx6hngs2q850hbrkz8y5248i46pz16pcc"; depends=[fastglm horseshoe mombf Rcpp RcppArmadillo survival]; }; - GWASinspector = derive2 { name="GWASinspector"; version="1.6.5"; sha256="0856bspcpywb07v1g1lwhlp2cfxla9m264g1dyhl61i9yxr10c9d"; depends=[data_table futile_logger ggplot2 gridExtra hash ini kableExtra knitr openxlsx R_utils rmarkdown RSQLite]; }; + GWASinspector = derive2 { name="GWASinspector"; version="1.7.1"; sha256="16q5r3fzli7vml481fl56mzhl0w8bp0bp70rlsw20a6vzhnk5xf2"; depends=[data_table futile_logger ggplot2 gridExtra hash ini kableExtra knitr openxlsx R_utils rmarkdown RSQLite]; }; GWEX = derive2 { name="GWEX"; version="1.1.3"; sha256="17yd7c8qiqkfhzllrcrrf1az0rq1g6xkggp35zyd04idcjz4c6hf"; depends=[abind doParallel EnvStats fGarch foreach lmomco MASS mvtnorm nleqslv Rcpp RcppArmadillo Renext]; }; GWI = derive2 { name="GWI"; version="1.0.2"; sha256="0gwbidvdzk7b1w880baa338h7cikvlzvqmbmdxca4r83jzzwxlj1"; depends=[]; }; GWLelast = derive2 { name="GWLelast"; version="1.2.2"; sha256="1nm4w5m4ca6npmpvh9nb0cnrbzlyv95nvvhgs3pqcrw4igagm4hj"; depends=[doParallel foreach geosphere glmnet sp spgwr]; }; GWRLASSO = derive2 { name="GWRLASSO"; version="0.1.0"; sha256="172gjp4f3i2na53l04ddsz588qmhfs4fwdnbnvpjvkrc8xsp9yf2"; depends=[glmnet Matrix numbers qpdf]; }; GWRM = derive2 { name="GWRM"; version="2.1.0.4"; sha256="13g91bx7b0cf1rnyc6azkvjilvc3kjynb8nclmbh8n3ccm6b0v2r"; depends=[doParallel foreach]; }; GWSDAT = derive2 { name="GWSDAT"; version="3.2.1"; sha256="0zqln2wnmid2cq5727pkk9lyqs4pb5nml12b5cza1xg0yzp38b6h"; depends=[deldir digest geometry Kendall lattice lubridate MASS Matrix officer raster readxl rhandsontable sf shiny shinycssloaders shinydashboard shinyjs sm sp splancs zoo]; }; - GWalkR = derive2 { name="GWalkR"; version="0.1.3"; sha256="0njga2h721vmz900z69sabf5vlzpws3fjawqrasj7y2w5hbcc4zk"; depends=[htmlwidgets jsonlite openssl shiny]; }; + GWalkR = derive2 { name="GWalkR"; version="0.1.4"; sha256="0c5nzqw4q1gn36h7pz43imbbirpwg7snszg9qqn6hzfzgcnqshay"; depends=[htmlwidgets jsonlite openssl shiny]; }; GWmodel = derive2 { name="GWmodel"; version="2.3-2"; sha256="16brnvq9r5qcyk5rxrak85hsp76z6l6q0vwg40pyd6444n6qkxhx"; depends=[FNN Rcpp RcppArmadillo robustbase sf sp spacetime spatialreg spdep]; }; GWnnegPCA = derive2 { name="GWnnegPCA"; version="0.0.4"; sha256="1yinzlp22z9z5fk9f1nm14i408yfm5kfgkn3pqnh4bkghs569ivg"; depends=[geodist nsprcomp pracma sf sp spData]; }; GWpcor = derive2 { name="GWpcor"; version="0.1.7"; sha256="0q43673pmm2c6kss688fpz10b39y3jn1kblv13p8ky0bk82hmcvi"; depends=[corpcor doParallel dplyr foreach geodist pracma sf sp]; }; @@ -2091,10 +2137,10 @@ in with self; { GameTheory = derive2 { name="GameTheory"; version="2.7.1"; sha256="1mq8406zgh4yww2jb7xvvmizyis9cb2hwdliacr4hxpjg38c3jdn"; depends=[combinat gtools ineq kappalab lpSolveAPI]; }; GameTheoryAllocation = derive2 { name="GameTheoryAllocation"; version="1.0"; sha256="0733vmyr0d9scjd5ixpnggr548snd7nj70knf5hbzc59nmbc5y11"; depends=[e1071 lpSolveAPI]; }; Gammareg = derive2 { name="Gammareg"; version="3.0.1"; sha256="0y3iqhrnppznqmx7sfibmwq3yq1l0jd8cfnpv0hch9byllh0syad"; depends=[]; }; - GauPro = derive2 { name="GauPro"; version="0.2.11"; sha256="011dw5fcpws0w05iyz5m1zfj1mj3ha1jnnky3pbi0d0n5jmx1h1h"; depends=[lbfgs R6 Rcpp RcppArmadillo]; }; - GaussSuppression = derive2 { name="GaussSuppression"; version="0.8.3"; sha256="11kl48scwn7mjw98wvbrb0xzswdx0pndr5b340j8iflwbikydj32"; depends=[Matrix RegSDC SSBtools]; }; + GauPro = derive2 { name="GauPro"; version="0.2.12"; sha256="03v4bhm5c32gql2s0ysxd4r12yjv28ar7nmap55rc38kj66pgzwx"; depends=[lbfgs R6 Rcpp RcppArmadillo]; }; + GaussSuppression = derive2 { name="GaussSuppression"; version="0.8.5"; sha256="0f6kq34z7p2qws94lwm0c1bnnys7hq0xzjpnhgnbxski4hc3wxqw"; depends=[Matrix RegSDC SSBtools]; }; GaussianHMM1d = derive2 { name="GaussianHMM1d"; version="1.1.1"; sha256="0c9khbg44yf04wp80bizd7j86gif1apqqafxyvi8692rrhf1r3ax"; depends=[doParallel foreach]; }; - GeDS = derive2 { name="GeDS"; version="0.2.0"; sha256="0qf4yah7nhjn8qwifr6irgv3iqll3rrf5c9kz90z2ny6c3wh04sg"; depends=[doFuture doParallel doRNG foreach future MASS Matrix mboost plot3D Rcpp Rmpfr TH_data]; }; + GeDS = derive2 { name="GeDS"; version="0.2.2"; sha256="09aimlk72x82yxnikb75vj9qpz1qg8a6623i61db0g88csashf8c"; depends=[doFuture doParallel doRNG foreach future MASS Matrix mboost plot3D Rcpp Rmpfr TH_data]; }; GeNetIt = derive2 { name="GeNetIt"; version="0.1-6"; sha256="1ay40ym6khs016bs7ljcn7krqn9bmj2csd7p4nhzapbhp4g45wsc"; depends=[dplyr exactextractr igraph nlme sf sfnetworks spdep terra tidygraph]; }; GenAI = derive2 { name="GenAI"; version="0.2.0"; sha256="0qwls17p5nv24wx17yyq42sg903119s5z4hi91czas0l4wh9lnif"; depends=[base64enc ggplotify httr jsonlite listenv magick magrittr R6]; }; GenAlgo = derive2 { name="GenAlgo"; version="2.2.0"; sha256="1pihqxif2v62hwf5761fshyhigcjmlgbvp2j7immxlsysjfw5xgq"; depends=[ClassDiscovery MASS oompaBase]; }; @@ -2125,20 +2171,21 @@ in with self; { GenomeAdmixR = derive2 { name="GenomeAdmixR"; version="2.1.7"; sha256="14qnabg1pj8sg2bvd3k4m467bh1q2zfjr0ljxn1ny031sqwis4cy"; depends=[ggplot2 ggridges hierfstat Rcpp RcppArmadillo RcppParallel rlang stringr tibble vcfR]; }; GenomicTools_fileHandler = derive2 { name="GenomicTools.fileHandler"; version="0.1.5.9"; sha256="09l87wf78bj49cdh7r3x81hn15c4pihxih8l59xxrpgdhp69268c"; depends=[data_table snpStats]; }; GeoAdjust = derive2 { name="GeoAdjust"; version="2.0.0"; sha256="0251672j2vl9jck31zfcqzsyw8pphzs934j8ljjmnw9qqd3gzd2p"; depends=[fields fmesher ggplot2 Matrix RcppEigen sf SUMMER terra TMB]; }; - GeoModels = derive2 { name="GeoModels"; version="1.1.9"; sha256="0r7li5hp52kf8ra2pdvwfxz8anr3m15zihfn6in2z6xs754nlc0s"; depends=[codetools data_table dfoptim dotCall64 fields GpGp GPvecchia hypergeo lamW mapproj nabor numDeriv optimParallel pbivnorm plotrix pracma scatterplot3d shape sn sp spam VGAM zipfR]; }; + GeoModels = derive2 { name="GeoModels"; version="2.0.3"; sha256="0v3mwngmsqqbjbg1hwl993263r98hb60b5slaa3mhcsbchyfhcwf"; depends=[codetools data_table doFuture dotCall64 FastGP fields foreach future hypergeo lamW mapproj nabor pbivnorm plotrix pracma progressr scatterplot3d shape sn sp spam VGAM zipfR]; }; GeoMongo = derive2 { name="GeoMongo"; version="1.0.3"; sha256="0m5nz5q81jz2v2bl2dbgdbdprrkckxr2c67qn0cg9vms0pi3fawr"; depends=[data_table geojsonR R6 reticulate]; }; GeoRange = derive2 { name="GeoRange"; version="0.1.0"; sha256="0krj9570wkhdvpaqkq3nf0maglqd44mpwn4v1bymvgpk1i1wf5p3"; depends=[moments proj4 raster sp velociraptr]; }; GeoWeightedModel = derive2 { name="GeoWeightedModel"; version="1.0.3"; sha256="1ylfggfqylqi76z3ac95cnxmmw3gzddq2r5qx5w0gjyjvrxr8wsv"; depends=[beepr cartography dplyr DT GWmodel raster readxl shiny shinyalert shinyBS shinybusy shinydashboard shinyjs shinyWidgets sp spdep]; }; GeodRegr = derive2 { name="GeodRegr"; version="0.2.0"; sha256="029yclgi4np000yh42j68v32m32lq2hmkh94q33hh1qkx8rilfa7"; depends=[MASS zipfR]; }; + GeomArchetypal = derive2 { name="GeomArchetypal"; version="1.0.1"; sha256="112drwxh4khcplrf3krf97v2wxf5qvfgm58mjaswjcdk1zkjdfi0"; depends=[abind archetypal distances doParallel dplyr geometry magrittr Matrix mirai plot3D rlang scales]; }; GeomComb = derive2 { name="GeomComb"; version="1.0"; sha256="05xb6m2ciszxd13yhqdkildh9nsq19ss8885ngj6ynvbchqkii7r"; depends=[forecast ForecastCombinations ggplot2 Matrix mtsdi psych]; }; GerminaR = derive2 { name="GerminaR"; version="2.1.4"; sha256="0f2dbq1adbd5p30kf9bi8qqk2s8da0p65i9a0igm16ckwpam7lkk"; depends=[agricolae dplyr DT ggplot2 purrr shiny tibble tidyr]; }; GetBCBData = derive2 { name="GetBCBData"; version="0.7.0"; sha256="0bc1ar1cx7vxvlld2dishi46a9bxs075vgby1xs8kbxlllknvcsi"; depends=[curl dplyr furrr future jsonlite memoise purrr stringr]; }; GetDFPData = derive2 { name="GetDFPData"; version="1.6"; sha256="1yxf1i5bipz16pbydl6qxlalh2zpdiigbxd1qczbjc1z78bl5727"; depends=[crayon curl dplyr lubridate readr reshape2 stringr tibble xlsx XML]; }; GetDFPData2 = derive2 { name="GetDFPData2"; version="0.6.3"; sha256="1dc1ks9mrwc8sjmp6fh47hlhhfwvfign6jmf4cxik28q3253al01"; depends=[dplyr lubridate magrittr memoise purrr RCurl readr rvest shiny stringr tidyr writexl xml2]; }; GetFREData = derive2 { name="GetFREData"; version="0.8.1"; sha256="15rca6pfsx5hcl1lnz49904b2ps0312mwjv8d4f0g76jhkvqfvss"; depends=[dplyr GetDFPData2 lubridate magrittr purrr readr rvest stringr XML xml2]; }; - GetLattesData = derive2 { name="GetLattesData"; version="1.4.3"; sha256="1nkik3krz1jy674zg5dxh02lgvbpgmbxbqwrnv9fz86m0c2mbs7b"; depends=[curl dplyr readr stringdist stringr XML]; }; + GetLattesData = derive2 { name="GetLattesData"; version="1.5"; sha256="0gfjqvzn03qxlyf4hj5kzfy8pqbphrw421bqbkb2pksa6gyvnfnq"; depends=[curl dplyr lubridate readr stringdist stringr XML]; }; GetQuandlData = derive2 { name="GetQuandlData"; version="1.0.0"; sha256="0j5n2xbjk64nyfdpzphsiwa9k08rvgdfkzbfqahjdy11rk4x1fgi"; depends=[dplyr fs jsonlite memoise purrr readr]; }; - GetTDData = derive2 { name="GetTDData"; version="1.5.4"; sha256="0g3clqnx4mvqsn743jzlai90ckylv5klkfxyg3lrqfds6n2mjxrh"; depends=[bizdays cli curl dplyr fs humanize lifecycle purrr readxl rvest stringr tibble tidyr xml2]; }; + GetTDData = derive2 { name="GetTDData"; version="1.5.5"; sha256="085rsqqrmda6mzb7n7kq00hpim62qqa85qk8kx8x5ch4j1qdhwi0"; depends=[bizdays cli curl dplyr fs humanize jsonlite purrr readxl rvest stringr tibble tidyr xml2]; }; GetoptLong = derive2 { name="GetoptLong"; version="1.0.5"; sha256="00fpm6nd3kqa2ikasxa62jzywi46fvvmx1mdavcp5yrxxn37j8wc"; depends=[crayon GlobalOptions rjson]; }; Ghat = derive2 { name="Ghat"; version="0.2.0"; sha256="0xvr3xpi3d00ns55bwbj7k74ccs0lf0vf8f74qxhi5389bf3l0zr"; depends=[rrBLUP]; }; Ghost = derive2 { name="Ghost"; version="0.1.0"; sha256="0anrb1n3f3jnq2p0dgqzw5a0gby2slafv2bybgy5gm3f9fsj831w"; depends=[R6]; }; @@ -2160,7 +2207,7 @@ in with self; { Gmisc = derive2 { name="Gmisc"; version="3.0.3"; sha256="1s8gkqg54622xhsmhl7n5pff2b6xfij111m7h3i4inzfjfmziq43"; depends=[abind checkmate forestplot glue Hmisc htmlTable knitr lattice lubridate magrittr Rcpp rlang rmarkdown stringr XML yaml]; }; GmptzCurve = derive2 { name="GmptzCurve"; version="0.1.0"; sha256="00n28difj8qs3i539fsd2x07qakyjxf77l8rq5fy07h4f4cpyd0x"; depends=[]; }; GoFKernel = derive2 { name="GoFKernel"; version="2.1-1"; sha256="0xygsdmggl35fafyp431mkwalwixw2r3f32qll1pf72dfwd8y8d3"; depends=[KernSmooth]; }; - GofCens = derive2 { name="GofCens"; version="0.98"; sha256="0afqjjqqb6vy164qgs8h0kdvw81hl4py05mqnnnwpkak81jdgwii"; depends=[actuar boot fitdistrplus ggplot2 gridExtra survival survminer survsim]; }; + GofCens = derive2 { name="GofCens"; version="1.0"; sha256="1kflcbydh2p78fqdfz35gp0jsp6xl2823mvsqq0yany9294bdqmr"; depends=[actuar boot fitdistrplus ggplot2 gridExtra survival survminer]; }; GofKmt = derive2 { name="GofKmt"; version="2.2.0"; sha256="1v9n1hfracincgaip7pym2l9h54azajw4fmsld0ff2rsd5np362z"; depends=[ggplot2 Rcpp RcppArmadillo Rsolnp]; }; GomoGomonoMi = derive2 { name="GomoGomonoMi"; version="0.1.0"; sha256="16kvf355yzpv0z2rndc5f50pxjnav6ld48j40vyip4h353wpwaks"; depends=[glue htmltools]; }; GoodFibes = derive2 { name="GoodFibes"; version="0.1.10"; sha256="0pcjb1266zhwwxqhyn9jlq2mpqwxg77aka5k29zc84izyz6ba3nk"; depends=[concaveman imager prodlim rgl splines2]; }; @@ -2173,15 +2220,15 @@ in with self; { GrabSVG = derive2 { name="GrabSVG"; version="0.0.2"; sha256="0w53wwaaap90shm17jjkyvcx55cpvpmd9cp9f7cbf36v73n74wjm"; depends=[fitdistrplus Matrix RANN spam sparseMatrixStats]; }; Grace = derive2 { name="Grace"; version="0.5.3"; sha256="0r41zvgdd5rqm15axqqssik6plwy7snpgw8m32labkfn3f0pp7n0"; depends=[glmnet MASS scalreg]; }; GramQuad = derive2 { name="GramQuad"; version="0.1.1"; sha256="02bpxs7yyd9805h8whvzfaxg43z4n5zxdj57hx36r3cx03hh26zd"; depends=[pracma]; }; - GraphPCA = derive2 { name="GraphPCA"; version="1.1"; sha256="0x6j3lyd70zc0c1al1407ma8crzi174d5dqkz6lx4vx24knrlhbs"; depends=[FactoMineR ggplot2 ggplot2movies scatterplot3d]; }; GrapheR = derive2 { name="GrapheR"; version="1.9-86-5"; sha256="1cjll41857dh5r1jb3zkbxpkqj2qj9s7867nwfdn0h3ws52fb304"; depends=[]; }; GreedyEPL = derive2 { name="GreedyEPL"; version="1.2"; sha256="19bgrgzb7jdqpljcbhr3d98y331k1b8fbwgcipak6zkhk2vr6vqz"; depends=[Rcpp RcppArmadillo]; }; GreedyExperimentalDesign = derive2 { name="GreedyExperimentalDesign"; version="1.5.6.1"; sha256="057wpfg5kfgcvfgry12agn7arg917jwgvxhjz6q1na13y8pmqnrv"; depends=[checkmate kernlab nbpMatching Rcpp rJava rlist stringi stringr survey]; }; GreedyExperimentalDesignJARs = derive2 { name="GreedyExperimentalDesignJARs"; version="1.0"; sha256="14i6m5qlh1fca9xmzid01hicd3bkf6rzl139ss78gvw544zrapw7"; depends=[rJava]; }; Greg = derive2 { name="Greg"; version="2.0.2"; sha256="13rsah8vf9s8wpkr5hlayyqa8v728cz80bvpg8vmlvnam8isb30s"; depends=[broom dplyr Epi forestplot glue Gmisc Hmisc htmlTable knitr nlme purrr rlang rms sandwich stringr tibble tidyr tidyselect]; }; + GregoryQuadrature = derive2 { name="GregoryQuadrature"; version="1.0.0"; sha256="067plq78h4qkzsdwdwman4d4n66fx23q4cj21m8mm2zpwqknmnm7"; depends=[pracma]; }; GreyModel = derive2 { name="GreyModel"; version="0.1.0"; sha256="0vxl4kgihcyl96qiz6sz5icznaa1jpsqqbn1irwmzyngwsh1qvzw"; depends=[]; }; Greymodels = derive2 { name="Greymodels"; version="2.0.1"; sha256="0gv4kqgn10l3pknx7w26yas1h70gsb2h8a82w2ykxs134xl4vpll"; depends=[cmna dplyr expm ggplot2 Metrics particle_swarm_optimisation plotly readxl scales shiny shinydashboard shinyWidgets]; }; - GridOnClusters = derive2 { name="GridOnClusters"; version="0.1.0"; sha256="11jir34jdq2kkkgm0rsdn2ivy4r1pkzj0681hxzy9v388lb3icym"; depends=[Ckmeans_1d_dp cluster dqrng fossil mclust plotrix Rcpp Rdpack]; }; + GridOnClusters = derive2 { name="GridOnClusters"; version="0.1.0.1"; sha256="1zanz8p5ghy7q7dsazv6wfkf5gl2dnbmchw88drbrip1h85gxyid"; depends=[Ckmeans_1d_dp cluster dqrng fossil mclust plotrix Rcpp Rdpack]; }; GrimR = derive2 { name="GrimR"; version="0.5"; sha256="005ywc31yn1cs54kjlkrryw0s7zm8dqqfjkdlkm4s1sbc9r3mssz"; depends=[car]; }; GroupBN = derive2 { name="GroupBN"; version="1.2.0"; sha256="0x41x7npaawnh6nxh4d4vmv2zwzc6c5ijrhh6fdpwzl4p75qlh1x"; depends=[arules bnlearn ClustOfVar magrittr MLmetrics PCAmixdata plyr PRROC rlist stringr visNetwork zoo]; }; GroupComparisons = derive2 { name="GroupComparisons"; version="0.1.0"; sha256="0fxgh1mksrfmd4yjrpxg3nfby5wyx75lj0shb5xrdzl7pxzh56ai"; depends=[car]; }; @@ -2193,7 +2240,7 @@ in with self; { GsymPoint = derive2 { name="GsymPoint"; version="1.1.2"; sha256="0wifxgfj67wf1ax56a6j40vckrydrkw5qj7bk875gr0w0ah03a3g"; depends=[ROCR Rsolnp truncnorm]; }; Guerry = derive2 { name="Guerry"; version="1.8.3"; sha256="01crjdgq7srn8a22a8cm4cbkxd4b0m7pm4fy5r5839ljy2k4dfs7"; depends=[sp]; }; GxEScanR = derive2 { name="GxEScanR"; version="2.0.2"; sha256="0k3avad4b2x4sqv8iilx5a8gkybjlipx50mj0la4kl9xv0azshkd"; depends=[prodlim Rcpp RcppArmadillo]; }; - GxEprs = derive2 { name="GxEprs"; version="1.1"; sha256="1ylggdh0rzjz5ms107lg4jzayl0rsnqqzzmmg94j483yij7bm89f"; depends=[]; }; + GxEprs = derive2 { name="GxEprs"; version="1.2"; sha256="1yv4b99mm1az298idvsb9czx0cgvq5032dv0k3wwcsgc5bk7hwqw"; depends=[]; }; H2x2Factorial = derive2 { name="H2x2Factorial"; version="2.0.0"; sha256="01if0ps43xhcw6q5khdbvjd0yvvhkcj4gvdx538g2kaxzi3lrj1z"; depends=[mvtnorm]; }; HAC = derive2 { name="HAC"; version="1.1-0"; sha256="1k19qrirhzl8qaa4svf7qa90r7gphbbvm9m0977z9gd704n8b62a"; depends=[copula]; }; HACSim = derive2 { name="HACSim"; version="1.0.6-1"; sha256="0hdczpn1x6zcxya8qlp82fzzpli3z2kfvynk5sqk97h1d55d27i4"; depends=[ape data_table matrixStats pegas Rcpp RcppArmadillo shiny]; }; @@ -2206,7 +2253,7 @@ in with self; { HCTR = derive2 { name="HCTR"; version="0.1.1"; sha256="1hg8mpallwxpmamk6q8x87w5hlqqwvbahfw5zmr9pisiagbwcsay"; depends=[glmnet harmonicmeanp MASS ncvreg Rdpack]; }; HCmodelSets = derive2 { name="HCmodelSets"; version="1.1.3"; sha256="0jchr8ncjpl2ljwf09cmpv679vdla11r1vkylhqaacdp1zdb93w6"; depends=[ggplot2 mvtnorm survival]; }; HDBRR = derive2 { name="HDBRR"; version="1.1.4"; sha256="03jl1m099z6gj2ipi7rnjnrd2rmk4zs54332rwlqyf40dv7ndbz1"; depends=[bigstatsr MASS numDeriv]; }; - HDCD = derive2 { name="HDCD"; version="1.0"; sha256="0yx2c5i2lfsnc9ra09bkhhvbwlfpi2a5r53riqhf2mb0vnxsxjcy"; depends=[mclust Rdpack]; }; + HDCD = derive2 { name="HDCD"; version="1.1"; sha256="01fxai59mi5hrjv0yx8f4cd6c5pin87n2sry2lk3w041c7df21gs"; depends=[mclust Rdpack]; }; HDCI = derive2 { name="HDCI"; version="1.0-2"; sha256="0wxbv54kbygymhh4r7052vnbj603c1kya01ykvmqzzkjyyfzidkz"; depends=[doParallel foreach glmnet iterators lattice Matrix mvtnorm slam]; }; HDCurves = derive2 { name="HDCurves"; version="0.1.2"; sha256="1656ia0qn4yrbkcrpjiyqq72fbvb088d07ma7kchvg875nzwj42v"; depends=[]; }; HDDesign = derive2 { name="HDDesign"; version="1.1"; sha256="1jim4h9bwn8r637va7m81kwwsfwyzs9pzn5a9i7c8xz8b1x191bj"; depends=[]; }; @@ -2220,11 +2267,12 @@ in with self; { HDNRA = derive2 { name="HDNRA"; version="1.0.0"; sha256="17c2bck5s68kn7b67g5pgxd14n13313899waynn79vnkl319czq9"; depends=[expm Rcpp RcppArmadillo Rdpack readr]; }; HDOMDesign = derive2 { name="HDOMDesign"; version="1.0-1"; sha256="1wfq4w73dkkmfwn3n9rwpjlpvm1ak76dv9ymh6zqfls5whdmp59g"; depends=[HadamardR]; }; HDRFA = derive2 { name="HDRFA"; version="0.1.4"; sha256="1dwys28vj5icv33x9zy4r62dslvwr1ajv29gs9lkalrc2wjh2qx2"; depends=[pracma quantreg]; }; - HDShOP = derive2 { name="HDShOP"; version="0.1.3"; sha256="18i17vv71wc0rqfl2i9bcfl1ry3bd61x9nd6g57x37ggjp7i6j5k"; depends=[Rdpack]; }; - HDSinRdata = derive2 { name="HDSinRdata"; version="0.1.1"; sha256="0svaly9wjym3bfdg19fjrwya73rnn5lfanx12lziq84f5ms3j4f3"; depends=[]; }; + HDShOP = derive2 { name="HDShOP"; version="0.1.5"; sha256="129j1dr3vjdg23dy45wws470v05j5azq8nq88b670kdgfw1586qm"; depends=[lattice Rdpack]; }; + HDSinRdata = derive2 { name="HDSinRdata"; version="0.1.2"; sha256="1wkhy6xf5ahj12sg9s32k53j7z2zpqj7rq0ficngdbyfzs2y6w48"; depends=[]; }; HDSpatialScan = derive2 { name="HDSpatialScan"; version="1.0.4"; sha256="1hwqdwr4jl887sgnjwq3gmxjhk6zz45nasvy3x7i7rmrqylxig60"; depends=[DT fmsb matrixStats pbapply plotrix purrr raster Rcpp RcppArmadillo sf sp SpatialNP swfscMisc TeachingDemos]; }; HDStIM = derive2 { name="HDStIM"; version="0.1.0"; sha256="0v43lwszxmka5li6mp10i2c6zq4si5hm2qsb27lib5gq5cxm23r7"; depends=[Boruta broom dplyr ggplot2 ggridges scales tibble tidyr tidyselect uwot]; }; - HDTSA = derive2 { name="HDTSA"; version="1.0.2"; sha256="1a2bc86047mla0dr89sf1xrin47v0mmdz6j5sil258hjxrl434hy"; depends=[clime Rcpp RcppEigen sandwich]; }; + HDTSA = derive2 { name="HDTSA"; version="1.0.3"; sha256="1syrqygfdr12sd32wq2ab0gibwbljlbrwzzkfnmhgh8js9dxv6j8"; depends=[clime geigen jointDiag MASS Rcpp RcppEigen sandwich]; }; + HDXBoxeR = derive2 { name="HDXBoxeR"; version="0.0.1"; sha256="10p41sawddrdpj5sji1jzp63hr6v6hvihb4n3yzci5wvh2a2lx9c"; depends=[dplyr RColorBrewer stringr tidyr wrapr]; }; HDclassif = derive2 { name="HDclassif"; version="2.2.1"; sha256="0npdnp86m71bsp4096j3yfcvr702ghhvdvxpd2m7lbnc8g3v0sdp"; depends=[MASS rARPACK]; }; HDclust = derive2 { name="HDclust"; version="1.0.3"; sha256="18l4qp261gj3kscfxs3s03kmb9y5ml31vnpgpm1iy125bks4mr2y"; depends=[Rcpp RcppProgress Rtsne]; }; HDcpDetect = derive2 { name="HDcpDetect"; version="0.1.0"; sha256="0ai35d9df5pmva52sb1rr20f11h0mbal6d179g865b7w6n90kfr1"; depends=[]; }; @@ -2236,7 +2284,7 @@ in with self; { HETOP = derive2 { name="HETOP"; version="0.2-6"; sha256="1fjwyqh7l296pghmc4m81q8icgbhvqvxr61zd638fr46gls3ky2p"; depends=[R2jags]; }; HEtools = derive2 { name="HEtools"; version="1.0.0"; sha256="0qfygdpmzrnih0p24xdqpxbgmcqbcgvbdjihh3x4cqspawcsffs5"; depends=[polynom]; }; HGMND = derive2 { name="HGMND"; version="0.1.0"; sha256="1iwqssj66q9dfgddzwqmnnpvxnvlrq7p1axm95lpkf3vrpn5rp6b"; depends=[genscore]; }; - HGNChelper = derive2 { name="HGNChelper"; version="0.8.1"; sha256="0qwkk5658j4j6w2wgvxkp38cyvscjp93d3zc7gb97vcihqx0ngxa"; depends=[]; }; + HGNChelper = derive2 { name="HGNChelper"; version="0.8.14"; sha256="0rhqpzq6z57wzydwcz0ry61al68l3mll79s5hz8by7hy61izj5k5"; depends=[splitstackshape]; }; HGSL = derive2 { name="HGSL"; version="1.0.0"; sha256="1p453xr3d1bmqc6mrmzb0hz9p0gp25m6v6qr0l3bapcf71vzbvq1"; depends=[]; }; HGraph = derive2 { name="HGraph"; version="0.1.0"; sha256="1y35lzym3mbr1v7j7v55i9mxb1vn65xzgp5542va1bngvrm25hjf"; depends=[knitr]; }; HH = derive2 { name="HH"; version="3.1-52"; sha256="10q3im2y5r9f5d80c35r2mmp89xclaf74hywkcyn3pk5vwc5wjfm"; depends=[abind colorspace gridExtra Hmisc lattice latticeExtra leaps multcomp RColorBrewer reshape2 Rmpfr shiny vcd]; }; @@ -2250,7 +2298,6 @@ in with self; { HMDHFDplus = derive2 { name="HMDHFDplus"; version="2.0.3"; sha256="1cz9q0kydb926v1n15z96cj1a7d1nyv2ffkxf00vay5l70n05137"; depends=[dplyr httr janitor lubridate readr rlang rvest stringr tidyr]; }; HMM = derive2 { name="HMM"; version="1.0.1"; sha256="03b548bnwqpnd7zypb4gvy9chyi5li2hp99a9vrh4qszxg2ihas7"; depends=[]; }; HMMEsolver = derive2 { name="HMMEsolver"; version="0.1.2"; sha256="0msin7rq3npz221mvrw3zcs6bwz439six99iblx5p3hkp1n1ljf3"; depends=[Rcpp RcppArmadillo Rdpack]; }; - HMMcopula = derive2 { name="HMMcopula"; version="1.0.4"; sha256="1gmvav02r3miaq4jx05qjcgzw5qv6w1j77vck5gpps8p38zcp34m"; depends=[copula doParallel foreach matrixcalc mvtnorm]; }; HMMextra0s = derive2 { name="HMMextra0s"; version="1.1.0"; sha256="067yb9xg1b4z2k0zhjj4wlvlv46c7rxaipyqkc81r30zh4qfrr1c"; depends=[ellipse mvtnorm]; }; HMMmlselect = derive2 { name="HMMmlselect"; version="0.1.6"; sha256="0kvw9nihbmvp19hbz5h8sz9jps5ik2di969jxdbp4ymj735c0fc9"; depends=[HiddenMarkov mclust MCMCpack mvtnorm Rcpp]; }; HMMpa = derive2 { name="HMMpa"; version="1.0.1"; sha256="0c3jmvcklywqsjmskx7zbw4d3l8i6bzr5h741v8iwgyw67mjn37g"; depends=[]; }; @@ -2258,11 +2305,9 @@ in with self; { HMPTrees = derive2 { name="HMPTrees"; version="1.4"; sha256="1jha64iyb0816rdg2i3z7i31z02r72k6acmvw0ibw3sli8zcvphb"; depends=[ape dirmult doParallel foreach HMP]; }; HMR = derive2 { name="HMR"; version="1.0.3"; sha256="1r0aw3x26a0w1pa02m449bpg6xrp1ikxv44f403snb8k48la9brc"; depends=[]; }; HMTL = derive2 { name="HMTL"; version="0.1.0"; sha256="0pn192bikij1yqms6vnv1n313g4q21966314zvg1krrwisklny9r"; depends=[Matrix pROC]; }; - HMVD = derive2 { name="HMVD"; version="1.0"; sha256="0agzvsl2n3zg3i519b93jqpiq9zix0bbrjdzk3ymsbb42dzkmj0d"; depends=[MASS]; }; HOasso = derive2 { name="HOasso"; version="1.0.1"; sha256="07xihcjj3gfxl1fd5x1dvfmfg8m19rfjzq110ay3vrj38sxxvkiw"; depends=[igraph Rdpack]; }; HPLB = derive2 { name="HPLB"; version="1.0.0"; sha256="1xxckjz90sdmng0sm9dlhwpzj79pxa3vd1cidxc44wjk4h25rq7q"; depends=[data_table]; }; HQM = derive2 { name="HQM"; version="0.1.0"; sha256="1q959qdakwzf07zbyxkvrslyc4kgd47g4wij2fgm7l4w3xm34lwz"; depends=[]; }; - HRM = derive2 { name="HRM"; version="1.2.1"; sha256="0qsxwi0v61k1waw21nrz86jazd5wgq2drhan3w8pmb35q2z20s35"; depends=[data_table doBy ggplot2 MASS matrixcalc mvtnorm plyr pseudorank Rcpp reshape2 xtable]; }; HRW = derive2 { name="HRW"; version="1.0-5"; sha256="08fh9504cck1ffrwim27nkrm9y1in6jl1s7zs8h8x3ik54p9jb0k"; depends=[KernSmooth]; }; HS = derive2 { name="HS"; version="1.1"; sha256="1vhbchc446j49jj7jgmy4l59n8ahk5l8jp1rl5xwsmn9iqir62mp"; depends=[data_table ggplot2 ggpubr partitions reshape2 tidyr zoo]; }; HSAUR = derive2 { name="HSAUR"; version="1.3-10"; sha256="1z4drab395bnyfbd19rn9hr1gz78ny773g1anh54w18iszakkvib"; depends=[]; }; @@ -2276,12 +2321,13 @@ in with self; { HTRX = derive2 { name="HTRX"; version="1.2.4"; sha256="1ggmqz3a0r5cilpynjmr52hjk88vq83wk1akcg6hkn3bzrwgcgmd"; depends=[caret fastglm glmnet recipes tune]; }; HTSCluster = derive2 { name="HTSCluster"; version="2.0.11"; sha256="0x9shhyla9bldkkh367gfdmf0k72l1ppixb8gzsa6nf8jx8qdpbp"; depends=[capushe edgeR plotrix]; }; HTSSIP = derive2 { name="HTSSIP"; version="1.4.1"; sha256="1j2f6f3i4di4bvsk44gxz0narg45ld2rahfn23wpgni5bszy0vb3"; depends=[ape coenocliner DESeq2 dplyr ggplot2 igraph lazyeval magrittr phyloseq plyr stringr tidyr vegan]; }; + HTSeed = derive2 { name="HTSeed"; version="0.1.0"; sha256="01h9lm2ljp67qfcl7vlh804r7q15arqx103jb9pvk2wx1c27qy3x"; depends=[dplyr]; }; HTT = derive2 { name="HTT"; version="0.1.2"; sha256="0345ydb3rjdkj4zm6xr5y4kf6plvxfgbpwkjs81pls99mr208qwz"; depends=[ggplot2 ggraph igraph Rcpp]; }; HUM = derive2 { name="HUM"; version="2.0"; sha256="06jx3f2zb52gjp05bq3zmgjkyiaa2j9v0biq23gg88gplpign6jw"; depends=[gtools Rcpp rgl]; }; - HVT = derive2 { name="HVT"; version="23.11.1"; sha256="0d7zffvphjb0x1756y8806r268zbmvqhm0f9ig3fmz28nj5bn7km"; depends=[cluster conf_design data_table deldir dplyr ggplot2 Hmisc magrittr MASS plyr polyclip purrr reshape2 scales sp splancs tidyr]; }; + HVT = derive2 { name="HVT"; version="24.5.2"; sha256="18a4gr2v2qn2n9z9w89pjq1plzdggzlyprh249srf3sbqw1pn1qq"; depends=[cluster conf_design data_table deldir dplyr gganimate ggforce ggplot2 gifski magrittr markovchain MASS plyr polyclip purrr reshape2 rlang scales splancs tidyr]; }; HWEintrinsic = derive2 { name="HWEintrinsic"; version="1.2.3"; sha256="0ijrczm0mm37a3v4v0hd7zb662rcyzqf58z4nbhrix1nf6vzj47m"; depends=[]; }; HYDROCAL = derive2 { name="HYDROCAL"; version="1.0.0"; sha256="0xq53nysn9kv6p1clgdjxsvj7qjlcmg02frfpw9fnzim53pzzrp4"; depends=[]; }; - HYPEtools = derive2 { name="HYPEtools"; version="1.6.1"; sha256="079v0ixs3i4w6d3vjgjff0csrxsih1ah62ax5x9q4g38gc0y9l9j"; depends=[clipr colorspace data_table dplyr ggplot2 ggpubr ggrepel lubridate ncdf4 patchwork pbapply purrr rlang scales stringr tidyr tidyselect zoo]; }; + HYPEtools = derive2 { name="HYPEtools"; version="1.6.2"; sha256="0g6gb3ig3qrqi9p8i35lxdgcz92ibjg2qdldnl1b3j1b6assza71"; depends=[clipr colorspace data_table dplyr ggplot2 ggpubr ggrepel lubridate ncdf4 patchwork pbapply purrr rlang scales stringr tidyr tidyselect zoo]; }; HaDeX = derive2 { name="HaDeX"; version="1.2.2"; sha256="1qj6n03pd5kd5ff5h4v8wmnqxxylsxx1p6i88nahqkah2mzg9jdr"; depends=[data_table dplyr DT ggplot2 gsubfn latex2exp readr readxl reshape2 shiny stringr tidyr]; }; HadIBDs = derive2 { name="HadIBDs"; version="1.0.0"; sha256="1mj6a4cp51kpsw93hz67smz9vc17ss5675wnalbq84wj89p2ma3l"; depends=[]; }; HadamardR = derive2 { name="HadamardR"; version="1.0.0"; sha256="0nr8m6fchpmlvhyisb61y0fymjjrk2k1sd67r14n87sgn3mafh4a"; depends=[numbers openxlsx]; }; @@ -2291,13 +2337,13 @@ in with self; { Haplin = derive2 { name="Haplin"; version="7.3.1"; sha256="0vyykbq2f5w4h7nai8w8krpax8q6v2hx76rr6xqy938rza5rfm79"; depends=[ff MASS mgcv rlang]; }; HaploCatcher = derive2 { name="HaploCatcher"; version="1.0.4"; sha256="182ihr45s2g452h054c6m8lgvj629spq1rd9vglzyy8ymg0l6w4j"; depends=[caret doParallel foreach ggplot2 knitr lattice patchwork randomForest]; }; HaploSim = derive2 { name="HaploSim"; version="1.8.4.2"; sha256="15jawq5bxy2kjvl7bxqjr6p02ivhfrdzjmvjy1vp45jnaz6052v2"; depends=[]; }; - HardyWeinberg = derive2 { name="HardyWeinberg"; version="1.7.5"; sha256="0b3szw090dsc3bkas2kvx787ww2i6zzg2qmdyivmqc8amx5arn6g"; depends=[mice nnet Rcpp Rsolnp]; }; + HardyWeinberg = derive2 { name="HardyWeinberg"; version="1.7.8"; sha256="1wddy32zljyya37isqb54sqhpp07s2kizjl36i08pj37bbza7yac"; depends=[mice nnet Rcpp Rsolnp shape]; }; Harvest_Tree = derive2 { name="Harvest.Tree"; version="1.1"; sha256="021zmppy7p2iakaxirfjdb5jzakg1ijma9d25ly2ni0nx0p1mh6z"; depends=[rpart]; }; Hassani_SACF = derive2 { name="Hassani.SACF"; version="2.0"; sha256="16sk1vn47gd5qaq31p8hnqa5p29nd230v4vbg2lsn2bhy9m32km3"; depends=[]; }; Hassani_Silva = derive2 { name="Hassani.Silva"; version="1.0"; sha256="0rhi3mrlyxksgd34xxha73m0x6aqdf2xk8bshdnmm463rkzyy31l"; depends=[]; }; HazardDiff = derive2 { name="HazardDiff"; version="0.1.0"; sha256="048lvhb4545a487kyknf5b5v8q3a9nsipbh0ii2k3pcc5vfql1h4"; depends=[ahaz Rdpack rootSolve survival]; }; HealthCal = derive2 { name="HealthCal"; version="0.1.1"; sha256="03q966d2kyi6x1ka4nmma94y75yj0vz4bk26psgnysvfz0nldfa3"; depends=[]; }; - HeckmanEM = derive2 { name="HeckmanEM"; version="0.2-0"; sha256="0fq9hg9if7li9nfhsw5nw7j1z4wy7j9b5wcvcmvgddmfvimb7760"; depends=[ggplot2 MomTrunc mvtnorm PerformanceAnalytics sampleSelection]; }; + HeckmanEM = derive2 { name="HeckmanEM"; version="0.2-1"; sha256="0rx9lbi5l0h95sg5lhjyrv31qmp4ziam84b98l2a05q56avck9jj"; depends=[ggplot2 MomTrunc mvtnorm PerformanceAnalytics sampleSelection]; }; HellCor = derive2 { name="HellCor"; version="1.3"; sha256="1bzc2ipm7vw7s849d43lcs0xrk2rs67h223dn9kahqg152mmknza"; depends=[energy FNN orthopolynom]; }; HelpersMG = derive2 { name="HelpersMG"; version="6.1"; sha256="1cggzna2gdl8pxdj2s0swlbwxs9qzz276x43inr87i9yxfqwv5q8"; depends=[coda ggplot2 MASS Matrix rlang]; }; HeritSeq = derive2 { name="HeritSeq"; version="1.0.2"; sha256="0jzf3pq43lllxvvmf0rqzxz9fx6931mgb0ipminlw1iakz8wa6w3"; depends=[cplm DESeq2 lme4 MASS pbapply SummarizedExperiment tweedie]; }; @@ -2309,18 +2355,17 @@ in with self; { HiDimDA = derive2 { name="HiDimDA"; version="0.2-6"; sha256="1128xf7jf2jwbkpczc9d56kzkn41m9hvqys4qawv3z80hpm91is5"; depends=[]; }; HiResTEC = derive2 { name="HiResTEC"; version="0.62.3"; sha256="1wswcd68zy03qcajkywgrgi7c06v1kyj2rmvdxj1s4yc0pcw657q"; depends=[beeswarm CorMID InterpretMSSpectrum openxlsx plyr]; }; HiddenMarkov = derive2 { name="HiddenMarkov"; version="1.8-13"; sha256="05dm3nl0ffsz2ziw3bz5bivyxk7r5bxs8xhky3hz660qaqzd51ki"; depends=[]; }; - HierPortfolios = derive2 { name="HierPortfolios"; version="0.1.0"; sha256="13f0bkcqglf6v0b2kqgsdr9px78ai3z8km3vkqnhsnphg8kh3m4z"; depends=[cluster fastcluster RiskPortfolios]; }; + HierPortfolios = derive2 { name="HierPortfolios"; version="1.0.0"; sha256="1l0ac3sx7q0xgqv6w0c7rahgjqpy045whih7r88wnj8qqwl1x1bp"; depends=[cluster fastcluster]; }; HighestMedianRules = derive2 { name="HighestMedianRules"; version="1.0"; sha256="01fj3xgrb9iav5v91bq04hzv9nhnwy8l00dx6yykghwvzjwfv3ih"; depends=[RMallow]; }; HistDAWass = derive2 { name="HistDAWass"; version="1.0.8"; sha256="001ranvb4lfjh9lmh5d031g0k6r3yxzwaxvyacxh07hlf9fh7kvn"; depends=[class FactoMineR ggplot2 ggridges histogram Rcpp RcppArmadillo]; }; HistDat = derive2 { name="HistDat"; version="0.2.0"; sha256="06zxsja8qk48q9lrr9fbk4sbpidysp31mcirxfr12l348lc9zf10"; depends=[]; }; HistData = derive2 { name="HistData"; version="0.9-1"; sha256="1c005rmzbxcc4m7rxnbxna4dlg3vrn5fhkj4vrkak3xrxbcfkafw"; depends=[]; }; - HistogramTools = derive2 { name="HistogramTools"; version="0.3.2"; sha256="1wkv6ypn006d8j6bpbhc1knw0bky4y8r7jp87482yd19q5ljsgv0"; depends=[ash Hmisc stringr]; }; HiveR = derive2 { name="HiveR"; version="0.3.63"; sha256="1vi24k23a017czfy9kihmq4s1dywzm274dyhyp1imx94afsnmhc3"; depends=[jpeg plyr png RColorBrewer rgl]; }; - Hmisc = derive2 { name="Hmisc"; version="5.1-2"; sha256="088gniwbymzhqg3vp0kpkbazryjzy9iq6wdvf9hg9qf0sjbibpg7"; depends=[base64enc cluster colorspace data_table foreign Formula ggplot2 gridExtra gtable htmlTable htmltools knitr nnet rmarkdown rpart viridis]; }; + Hmisc = derive2 { name="Hmisc"; version="5.1-3"; sha256="1sq5qvlr9swhdvf3l420y9fxq5s1qw8aiyl9a62sb357ywppfq9w"; depends=[base64enc cluster colorspace data_table foreign Formula ggplot2 gridExtra gtable htmlTable htmltools knitr nnet rmarkdown rpart viridis]; }; Hmsc = derive2 { name="Hmsc"; version="3.0-13"; sha256="13gqwjniwxc5lgsj044qjq6ic0ibwvj3mviw4hq31s89m834gvyb"; depends=[abind ape BayesLogit coda fields FNN ggplot2 MASS Matrix matrixStats MCMCpack nnet pracma pROC rlang sp statmod truncnorm]; }; HoRM = derive2 { name="HoRM"; version="0.1.3"; sha256="09dkpzlwkkdn0z8g9fbb7hzxbrrq70x9v1zx254svck2jyk0hx58"; depends=[ggplot2 MASS orthopolynom quantmod rsm]; }; HodgesTools = derive2 { name="HodgesTools"; version="1.0.0"; sha256="02i87pd5ah3mmf03878354p8nqh3bgn9cnrl1pnnrb3qw7afj19q"; depends=[data_table dplyr ggplot2 ini magrittr qqman RColorBrewer readr RecordLinkage]; }; - Holomics = derive2 { name="Holomics"; version="1.1.0"; sha256="1aammamx7x4dplh6mics5qp7my9204a7vrs645vvyj2l41sm9q1j"; depends=[BiocParallel bs4Dash config dplyr DT ggplot2 golem igraph markdown mixOmics openxlsx readxl shiny shinyalert shinybusy shinyjs shinyvalidate shinyWidgets stringr tippy visNetwork]; }; + Holomics = derive2 { name="Holomics"; version="1.1.1"; sha256="1d2ypgsaq1y4q9q8yis2549m2vaxg4fas6x9zagsw4jx97vi61kh"; depends=[BiocParallel bs4Dash config dplyr DT ggplot2 ggrepel golem igraph markdown matrixStats mixOmics openxlsx readxl reshape2 RSpectra shiny shinyalert shinybusy shinyjs shinyvalidate shinyWidgets stringr tidyr tippy uuid visNetwork]; }; Homeric = derive2 { name="Homeric"; version="0.1-3"; sha256="1vcs8fj39zpz45p7gph0mnx65hgr35na0b79i8llyw7i1h7zqzxr"; depends=[]; }; HomomorphicEncryption = derive2 { name="HomomorphicEncryption"; version="0.9.0"; sha256="0ynxn1mcr76yvqjpmi8mxl35i9r1fy7rwshpv8qx68nabk67rh61"; depends=[HEtools polynom]; }; HospitalNetwork = derive2 { name="HospitalNetwork"; version="0.9.3"; sha256="183nb9h9b1z1ifpnzcxa8wh3xm2id6fnq9vqd4vkbxzw7wlyd86b"; depends=[checkmate data_table ggplot2 ggraph igraph lubridate R6]; }; @@ -2333,12 +2378,11 @@ in with self; { HybridDesign = derive2 { name="HybridDesign"; version="1.0"; sha256="19hgljm7mhd00s2lvvxmdr35zifnl0kymmcx06jfqkld3qd3zli6"; depends=[ResourceSelection testit]; }; HybridMicrobiomes = derive2 { name="HybridMicrobiomes"; version="0.1.1"; sha256="05y3hcw18q9v3fpv0i0msmr9v4hnfgk0ni55wk3k786h96m2swsv"; depends=[ape compositions geometry ks PERMANOVA phyloseq rgl rlang StereoMorph vegan]; }; HydroCode = derive2 { name="HydroCode"; version="1.0.3"; sha256="1kykxra9cg1n17l2zmnjk1qv8450v4qix5sylm1k9xxzirbb7wca"; depends=[sp]; }; - HydroMe = derive2 { name="HydroMe"; version="2.0-1"; sha256="1pzf3z3f2xqmj7ixdg01k8552l4vz7yaf2mb53q59ihfhlbqchni"; depends=[]; }; + HydroMe = derive2 { name="HydroMe"; version="2.1.1"; sha256="06fqzvpwh25qc9ksh49gpfyw8jgy9xbw27wlp8mxk0b2fq58fyqg"; depends=[]; }; HydroPortailStats = derive2 { name="HydroPortailStats"; version="1.0.3"; sha256="1f5h9xqn4vn9wbnvlshbc8r200vx1pwm9ic7sdzsv4z0j7z7wl1j"; depends=[evd mvtnorm numDeriv]; }; HyperG = derive2 { name="HyperG"; version="1.0.0"; sha256="0w84ph0vd03i22s8g52jf2w96yd80ynbh6x0p88apg92jdsapcrc"; depends=[gtools igraph Matrix mclust proxy RSpectra]; }; HyperbolicDist = derive2 { name="HyperbolicDist"; version="0.6-5"; sha256="10bcqychdc3rrdyqng5sxjbr8a6wljwnqa4gff99dmx8774sdw16"; depends=[]; }; - HypergeoMat = derive2 { name="HypergeoMat"; version="4.0.2"; sha256="06ljg2v0dbqi9mf2l236p616x62cbx4q05qymbsj8inmajwv0piz"; depends=[EigenR gsl JuliaConnectoR Rcpp RcppEigen]; }; - IADT = derive2 { name="IADT"; version="1.0.0"; sha256="1hyshs7dlpbsvpkn56fi7cfn54qkwmwyf9bhh1yks9nnhdxpbsgd"; depends=[mgcv mvnfast Rdpack Rmpfr]; }; + IADT = derive2 { name="IADT"; version="1.2.1"; sha256="053ymsn7ibjkzdz1znlfz1y6j78bl2fv81dbiihksw09wzx2aa3c"; depends=[mgcv mvnfast Rdpack Rmpfr]; }; IALS = derive2 { name="IALS"; version="0.1.3"; sha256="1gmsn428r923clq4zphl24wxbrhrn2mpbdkw38kaklxhwwf8lzki"; depends=[HDMFA pracma RSpectra]; }; IAPWS95 = derive2 { name="IAPWS95"; version="1.2.4"; sha256="0jccq1pj0b8xpa7zs20ikkwlyj0f2q5qzdz8kllm0qiwlrrj7jsn"; depends=[ggplot2 pander Rcpp]; }; IASD = derive2 { name="IASD"; version="1.1.1"; sha256="0bw36kghfrz3kh8rafshv16q2ac0ynsjcks021g27knvvbapnic9"; depends=[]; }; @@ -2380,12 +2424,13 @@ in with self; { ICcalib = derive2 { name="ICcalib"; version="1.0.8"; sha256="1y2w12ka0qxh9dg6dlcrnndz1xrv8gkppan64qkyk5vjrh18ajz4"; depends=[fitdistrplus icenReg ICsurv MASS msm numDeriv Rcpp RcppArmadillo survival]; }; ICcforest = derive2 { name="ICcforest"; version="0.5.1"; sha256="0z511d3drq5flxwvx7kjv3v5yanjhvs5ayvkm996jbiz3k49a12v"; depends=[icenReg ipred partykit survival]; }; ICglm = derive2 { name="ICglm"; version="0.1.0"; sha256="1dmnz6sf311xsvyg8dh082pxgzizm701cf1ml0xg4s9kls3fd2i8"; depends=[Matrix]; }; + ICompELM = derive2 { name="ICompELM"; version="0.1.0"; sha256="1wah28d92cwgcwpm3gcjhw8d84s81r1bjkh41kdi9741dn79f33r"; depends=[ica tsutils]; }; ICsurv = derive2 { name="ICsurv"; version="1.0.1"; sha256="1wgv9bjcx8y9qvkx3nfax86clhfmwr7bxzq8i12aqmp1clxpgx6a"; depends=[MASS matrixcalc]; }; ICtest = derive2 { name="ICtest"; version="0.3-5"; sha256="13i7zsjy4dqx48vzn9294k7xb93m6r2ab3d546rymfqdzdjszpnp"; depends=[GGally ggplot2 ICS ICSNP JADE mvtnorm png Rcpp RcppArmadillo RcppRoll survey xts zoo]; }; ICvectorfields = derive2 { name="ICvectorfields"; version="0.1.2"; sha256="0h10ijh00ahk2aawg090sspdyxzln8cwzvrfqyi45p19sbx93503"; depends=[fftwtools Rcpp terra]; }; IDCard = derive2 { name="IDCard"; version="0.3.0"; sha256="06b5zqmgh4clni3mv6ab2a52r4z34isbz0hd1i61793gps9fkc0y"; depends=[stringr]; }; IDE = derive2 { name="IDE"; version="0.3.1"; sha256="1pbfxhcbnmn0mh7a96ff58p4dpkb0di7l0v40nqyjk4jbkpd8rfl"; depends=[DEoptim dplyr FRK ggplot2 Matrix sp spacetime sparseinv tidyr]; }; - IDEAFilter = derive2 { name="IDEAFilter"; version="0.1.2"; sha256="1nwsq5jy374f2sdnrxw79kq3wklydrygm4qsd6v6npdqw55jli2l"; depends=[crayon ggplot2 pillar purrr RColorBrewer shiny shinyTime]; }; + IDEAFilter = derive2 { name="IDEAFilter"; version="0.2.0"; sha256="0clr5jkrmwp6nd491rm67i794kh0dcjlhf6z56a8pvjhhia29hpy"; depends=[crayon ggplot2 pillar purrr RColorBrewer shiny shinyTime]; }; IDEATools = derive2 { name="IDEATools"; version="3.5.2"; sha256="0g5wi9mjvcnz0s6x4rnhfa2xkdgja21b3k4z9iz8hszismdzs5sq"; depends=[data_table ggimage ggplot2 ggpubr ggtext jsonlite openxlsx pdftools readxl rlang rmarkdown shiny stringi tibble]; }; IDF = derive2 { name="IDF"; version="2.1.2"; sha256="19mg7a83badb3wqnrmx5ric0nlfdb33wcxfmq9457s8019ghvpvv"; depends=[evd fastmatch ismev pbapply RcppRoll]; }; IDMIR = derive2 { name="IDMIR"; version="0.1.0"; sha256="0871ibdpnhqbf0ighyl9254ad8wy52gyi7i2nry19is1kr7av40s"; depends=[egg fastmatch forestplot ggplot2 igraph pheatmap survival survminer]; }; @@ -2415,6 +2460,7 @@ in with self; { IIVpredictor = derive2 { name="IIVpredictor"; version="0.1.0"; sha256="15361j8b60jj3bh8cjxs39d9bir1aywy9bd254s5w94cakhy0ld5"; depends=[lavaan R2jags]; }; ILS = derive2 { name="ILS"; version="0.3"; sha256="0l4rrl1j72lqg87nzw4xap054gl2h3m90g8sl5bzg3jc7c290rd7"; depends=[depthTools fda_usc lattice MASS multcomp]; }; ILSE = derive2 { name="ILSE"; version="1.1.7"; sha256="0jx0f7lk18k0wsypi4ynq1zqbb9hsmcmf0chxyrpqkadfqb6mgwr"; depends=[pbapply Rcpp RcppArmadillo]; }; + ILSM = derive2 { name="ILSM"; version="1.0.2"; sha256="079szirz5a1rcza756bjjdlz0wwdg8jifnz5kiw1wlkmc3x2m7sz"; depends=[igraph Matrix]; }; IMD = derive2 { name="IMD"; version="1.2.2"; sha256="0cixq15n38bj49xp9cxra7rzi9sp5fbf4ac4m7nl2iiswscy15fr"; depends=[dplyr janitor readr rlang tibble]; }; IMEC = derive2 { name="IMEC"; version="0.2.0"; sha256="1k85pr6s6lysn53n59i8rcdhyg7r3il5avbckvvz43p6lh0fgxpy"; depends=[igraph IsingSampler qgraph]; }; IMIFA = derive2 { name="IMIFA"; version="2.2.0"; sha256="08h53w1axvmvnd4z1nf5bsps5sr6g8a77q6pvg39ss7jcfqm800v"; depends=[matrixStats mclust mvnfast Rfast slam viridisLite]; }; @@ -2426,8 +2472,8 @@ in with self; { IMmailgun = derive2 { name="IMmailgun"; version="0.1.2"; sha256="09acmi6xj186fb8nhj8q0nxmkp2p32a1l95glzvz84gax4xakhz8"; depends=[httr]; }; INCATome = derive2 { name="INCATome"; version="1.0"; sha256="1gbmcirs49ydmk5rg2vl5gdy39dfx9psw5mijibzjszcfjar3kqs"; depends=[genefilter limma multtest RankProd siggenes]; }; INLABMA = derive2 { name="INLABMA"; version="0.1-12"; sha256="0dkb5v08ws38cfv33r4asz6shik08zd3535sc71gsgcg6cnj2d3q"; depends=[Matrix sp spdep]; }; - INLAjoint = derive2 { name="INLAjoint"; version="24.2.4"; sha256="0q7wpm058qzzah8bxsghx3v88vijzhpxp30rbbrlq2xznhhsjksk"; depends=[ggplot2 lme4 Matrix numDeriv]; }; - INLAspacetime = derive2 { name="INLAspacetime"; version="0.1.7"; sha256="0b3ahvgqkgb32zpr5cbyz1k0sszzm6pim1dxyhka6mv73732qzgw"; depends=[fmesher Matrix sf sp]; }; + INLAjoint = derive2 { name="INLAjoint"; version="24.3.25"; sha256="03hd29x8arww3fkyzgj8wv1b0sm5nl994bmg6m2sb4xg00slhp05"; depends=[ggplot2 lme4 Matrix mvtnorm nlme numDeriv]; }; + INLAspacetime = derive2 { name="INLAspacetime"; version="0.1.8"; sha256="0yyhcizaj90qqvirrk74whynxf7zvv09w79k4j61i4n84hm0njdm"; depends=[fmesher Matrix sf sp terra]; }; INQC = derive2 { name="INQC"; version="2.0.5"; sha256="1gz7gyq5n2bmh18yrg29nz8kmdc0b35chwqxr6y2sggdm8j28akd"; depends=[evd gdata suncalc]; }; INSPECTumours = derive2 { name="INSPECTumours"; version="0.1.0"; sha256="1jh6p3bgnrjixqzvjl0z3nv6lh01fx3x925h3na2pi3scqx5gx0s"; depends=[brms dplyr DT ggeffects ggplot2 knitr lme4 modelr pander plotly purrr readxl rlang rmarkdown shiny shinyalert shinyFeedback shinyjs shinytoastr shinyvalidate tidybayes tidyr tippy vroom waiter]; }; INSPIRE = derive2 { name="INSPIRE"; version="1.5"; sha256="0938l50yxnb5q628mp874ayx9ybvcjddis20y1hzm5cmlsg0hqhg"; depends=[missMDA]; }; @@ -2452,6 +2498,7 @@ in with self; { IRCcheck = derive2 { name="IRCcheck"; version="1.0.0"; sha256="035sx36qf5hdnc51h8251qwxfm30r8h2v2qs2x161ip4cqghw019"; depends=[corpcor GGMncv glmnet MASS Rdpack]; }; IRISMustangMetrics = derive2 { name="IRISMustangMetrics"; version="2.4.6"; sha256="08p1xg4mqi36647nzmlmmmvdgzc9xgz4sf4lh2lrlma99f7y8kzd"; depends=[dplyr IRISSeismic pracma RCurl seismicRoll signal stringr XML]; }; IRISSeismic = derive2 { name="IRISSeismic"; version="1.6.6"; sha256="0da4bh5kvlp3dchsz0dyddwpwdvss7aij2xsi2kkppi3hrfwja7j"; depends=[pracma RCurl seismicRoll signal stringr XML]; }; + IRR2FPR = derive2 { name="IRR2FPR"; version="0.1.1"; sha256="0h662gm0pg25swsgxjgm000ykrp1s6nqx0mhckm23qiprcxaq0hl"; depends=[mvtnorm shiny]; }; IRTBEMM = derive2 { name="IRTBEMM"; version="1.0.8"; sha256="0n48wi1lha7rbi9b8q71y9wvxkjsglwnyhzd1yhdbfms6768slmv"; depends=[]; }; IRTShiny = derive2 { name="IRTShiny"; version="1.2"; sha256="094ax94y6k5z4vlxfla2w19f57q0z32nwwd5npjbgmnkhvfhhl9v"; depends=[beeswarm CTT ltm psych shiny shinyAce]; }; IRTest = derive2 { name="IRTest"; version="2.0.0"; sha256="0fnz98kn463cqp7yp63w1zasp131a448pr4hmkp1y3dpgclfdcva"; depends=[betafunctions dcurver ggplot2 usethis]; }; @@ -2486,7 +2533,7 @@ in with self; { ImVol = derive2 { name="ImVol"; version="0.1.0"; sha256="02bwjd6w40j9y3kq3zk1cwn6y9srpm2m390y63778w9qj4pk67lh"; depends=[caret dplyr ggplot2 nls2 tidyr tidyverse]; }; Immigrate = derive2 { name="Immigrate"; version="0.2.1"; sha256="0pnnvv63kkg7pgyblb1vlx54c6169n40fn58aypdy5xcnknabvxn"; depends=[pROC Rcpp]; }; ImpShrinkage = derive2 { name="ImpShrinkage"; version="1.0.0"; sha256="18ik1sl2628hcz37rkdq2fdbx1c6hs7svalsfc90w3ww0aijy91y"; depends=[]; }; - ImpactEffectsize = derive2 { name="ImpactEffectsize"; version="0.6.3"; sha256="0kks5c8hksignlgdam3rwagwyz3aw5r5491gw17jy1gnhcixm3k8"; depends=[caTools matrixStats parallelDist Rcpp]; }; + ImpactEffectsize = derive2 { name="ImpactEffectsize"; version="0.7"; sha256="1g62p81x6i9gs562m3pdixw27d2cbzhz8drmcfslgs6f48zlir0j"; depends=[caTools matrixStats parallelDist Rcpp]; }; ImportExport = derive2 { name="ImportExport"; version="1.3"; sha256="07i7p9xha1f23r07lw87ak13hd4wavdvwh8vb8sg2gyvnpa5njwp"; depends=[chron gdata haven Hmisc readxl RODBC writexl]; }; ImportanceIndice = derive2 { name="ImportanceIndice"; version="0.0.2"; sha256="1rxjb4nmpwpf018k0rwf2gs993dz3dq120x0b78y4r8jkkccyphq"; depends=[crayon]; }; ImputeLongiCovs = derive2 { name="ImputeLongiCovs"; version="0.1.0"; sha256="16paj3fq06dsh4hq4mv0wvrprzhw6mv3ysnf3iakgjb93bfbhr6p"; depends=[nnet]; }; @@ -2495,7 +2542,7 @@ in with self; { InPosition = derive2 { name="InPosition"; version="0.12.7.1"; sha256="0d9c7dwaa1v0j8p5ff9223fc2gkbmbvyqylma2d8l4x5m92jmkv0"; depends=[ExPosition prettyGraphs]; }; InSilicoVA = derive2 { name="InSilicoVA"; version="1.4.0"; sha256="15x6d928rk9in2swbaal6hcw2nikj153fgqyd7nhdkcbs1agrsl1"; depends=[coda ggplot2 InterVA5 rJava]; }; IncDTW = derive2 { name="IncDTW"; version="1.1.4.4"; sha256="0q8ssv86gbp3v6gznzm5vkc8qhny6ycbh85jg5z4izldpx8a4fq6"; depends=[data_table ggplot2 Rcpp RcppArmadillo RcppParallel scales]; }; - IncidencePrevalence = derive2 { name="IncidencePrevalence"; version="0.7.2"; sha256="1px7yv4ssrvbdgw86nx7wz84ja17zpl55r7giia36nw4w91aq16f"; depends=[CDMConnector checkmate cli DBI dbplyr dplyr ggplot2 glue lifecycle lubridate magrittr omopgenerics purrr rlang scales stringr tibble tidyr tidyselect zip]; }; + IncidencePrevalence = derive2 { name="IncidencePrevalence"; version="0.7.3"; sha256="0cw2075z492sav1nqlvq8s6xm6835s07g1zkwjmg81mb95a060f0"; depends=[CDMConnector checkmate cli clock DBI dbplyr dplyr ggplot2 glue lifecycle lubridate magrittr omopgenerics PatientProfiles purrr rlang scales stringr tibble tidyr tidyselect zip]; }; IncomPair = derive2 { name="IncomPair"; version="0.1.0"; sha256="156mc4csbxz976md7ikjd6sqamzsfc8ik9xf1qbhrfl8y7957kbb"; depends=[]; }; IndGenErrors = derive2 { name="IndGenErrors"; version="0.1.4"; sha256="1iwq53vahcaa0cqmk8g0484drdlphips7p95z4rh6miv2bxjh8fa"; depends=[ggplot2]; }; IndTestPP = derive2 { name="IndTestPP"; version="3.0"; sha256="1z48pr8znbk1gdvjfdvszxlzhj7v88p3y7zhi1f0xw75dkfpnwwy"; depends=[]; }; @@ -2504,6 +2551,7 @@ in with self; { IndexNumR = derive2 { name="IndexNumR"; version="0.6.0"; sha256="02ga1airmzaqb0kabg9ipq3jrwsfdafj729bwj8y5pccpks60fjl"; depends=[]; }; IndexNumber = derive2 { name="IndexNumber"; version="1.3.2"; sha256="0ff6fnkgbfwn3sasglr1aygvm9bawrvcj432xgka1vk28qnns0if"; depends=[]; }; IndexWizard = derive2 { name="IndexWizard"; version="0.2.1.0"; sha256="09qrnq8yzz4r8i7m696a1jzw91iiccwgj73176dabkh3pdrhrs3r"; depends=[]; }; + Indicator = derive2 { name="Indicator"; version="0.1.2"; sha256="0dwrg23qaqj39vvzhk20plr64br1y5dn61w9xk1arl22qlc2b011"; depends=[FactoMineR missMethods norm]; }; InferenceSMR = derive2 { name="InferenceSMR"; version="1.0.2"; sha256="1f0glgzxaab7fxl938ac7dai2mpscdcwvh9wg76nkgbn2my7g5cg"; depends=[survival]; }; InfiniumPurify = derive2 { name="InfiniumPurify"; version="1.3.1"; sha256="0yqah4rwpishas0xyv5a7cn4v18brj33cd7f494g21b9brggafq1"; depends=[matrixStats]; }; Inflation = derive2 { name="Inflation"; version="0.1.0"; sha256="0ikhsslbg32kr9vcaxq8qwaa7ahiwvq91xwv53550wci2vyzmybp"; depends=[seasonal]; }; @@ -2515,12 +2563,14 @@ in with self; { InjurySeverityScore = derive2 { name="InjurySeverityScore"; version="0.0.0.2"; sha256="0g52cksa774in18ykrym61l3my9zm343bgsq5mg7mki9x65xd35z"; depends=[dplyr rlang tidyr]; }; Inquilab = derive2 { name="Inquilab"; version="0.1.0"; sha256="1hmfrjvwvv56z19cpp9ndwn3g3i3dlwm9yg3f6g5846w81jfkb3n"; depends=[]; }; InspectChangepoint = derive2 { name="InspectChangepoint"; version="1.2"; sha256="084ji77z0dnbjrhy6z40kjbblsgk3z00z256pfknkqxd3v7sawvc"; depends=[MASS]; }; + InsuSensCalc = derive2 { name="InsuSensCalc"; version="0.0.1"; sha256="0spgqwxn1bnbmlv7vfx10mls3mrdss5sk0zvriba5zd8v0ljc6sx"; depends=[dplyr magrittr tibble tidyr]; }; IntCal = derive2 { name="IntCal"; version="0.3.1"; sha256="0d5sd63ajmksafxfrfbd8jsgkbcxirjgd1532blylbcnwjlcws15"; depends=[]; }; IntNMF = derive2 { name="IntNMF"; version="1.2.0"; sha256="09qzyvv7d4wr68qrlhcd4ivr65is3mypv1vaxpswwcjmcmyr4gzp"; depends=[cluster InterSIM MASS mclust NMF]; }; InteRD = derive2 { name="InteRD"; version="0.1.1"; sha256="18grg2pyn0p3dwqhm2251d47sd97wcjr858y64lf5chkhvcz09nk"; depends=[Biobase cowplot DescTools ggplot2 limSolve mgcv pheatmap Rcpp reshape2]; }; IntegrateBs = derive2 { name="IntegrateBs"; version="0.1.0"; sha256="1pkx4wpahd1sabzx55law3710x3vbh9yi6kii8gs2xfq3cb1llmq"; depends=[]; }; IntegratedJM = derive2 { name="IntegratedJM"; version="1.6"; sha256="0fv24z7vidhn09ljk09pjzkrlg2rlwxcrhfjc53ybjjgsgay99z6"; depends=[Biobase ggplot2 nlme]; }; IntegratedMRF = derive2 { name="IntegratedMRF"; version="1.1.9"; sha256="0kklgc48cib4bjfs9qbw13nkp8xyjdazrg6z15x69jylnxyakic7"; depends=[bootstrap ggplot2 limSolve MultivariateRandomForest Rcpp]; }; + InterNL = derive2 { name="InterNL"; version="0.1.0"; sha256="0qc6s21pjbw40jdavs5cap5m3kcjs2blyr9s80vf499j7cikkzqc"; depends=[forecast MLmetrics]; }; InterSIM = derive2 { name="InterSIM"; version="2.2.0"; sha256="14yccan88szf26w1hg1lkvmssids961gng7il3bjr2f1l0k8vd3b"; depends=[MASS NMF]; }; InterVA4 = derive2 { name="InterVA4"; version="1.7.6"; sha256="02fci1p8im8jpalv1mbrhrwhvpi23mzhwhpd1knpxyv7h6l9x0kg"; depends=[]; }; InterVA5 = derive2 { name="InterVA5"; version="1.1.3"; sha256="08cnhbq1048z7qcvvj0d1br7d8jljzf48ci94aixs0y0vs8lgvvz"; depends=[curl readxl]; }; @@ -2544,11 +2594,10 @@ in with self; { Iso = derive2 { name="Iso"; version="0.0-21"; sha256="19lgwbfbca30mh3hhnarzab5cvnrwnr0pxam6fvfnadnqzhjm15n"; depends=[]; }; IsoCheck = derive2 { name="IsoCheck"; version="0.1.0"; sha256="06g0srp14yiha95mbmifaqf5yr5ppjnc20nyr237ah3l776mhsif"; depends=[dplyr gtools plyr]; }; IsoCor = derive2 { name="IsoCor"; version="0.1.40"; sha256="191y51mg6kii4x99c7437888kkacml0ch53qh1gbwv10gl2c4w8z"; depends=[bsplus DT golem htmltools MALDIquant markdown plyr rmarkdown shiny shinyalert shinyjs]; }; - IsoGene = derive2 { name="IsoGene"; version="1.0-24"; sha256="0flm0mszankvl3aizwsazyhvz2xkr4gfqiqywpc0r1swqj19610r"; depends=[affy Biobase ff Iso xtable]; }; IsoMemo = derive2 { name="IsoMemo"; version="23.10.1"; sha256="0im0h5av752gy8gl48m9hclsclz7cg47k1qi9ndip66k6dinp6df"; depends=[curl jsonlite modules]; }; IsoSpecR = derive2 { name="IsoSpecR"; version="2.1.3"; sha256="0cy9y3lh20xxj9sah8s2zrwnbzk39s5xmscj4mskvn897bmlksh6"; depends=[Rcpp]; }; - IsoplotR = derive2 { name="IsoplotR"; version="6.1"; sha256="04fx5240fiq4wm1335p1dz65avjgspmdljfsvkr9nvl724gfm3md"; depends=[MASS]; }; - IsoplotRgui = derive2 { name="IsoplotRgui"; version="6.1"; sha256="0l9wnw3pfrcsbn8ky33a0zlyzzr70yk8fb4qcpiz52k61nzpy4cy"; depends=[IsoplotR shinylight]; }; + IsoplotR = derive2 { name="IsoplotR"; version="6.2"; sha256="0n4xlxs4swl5b11b9ks9f4g2m8cpnb2gdq7zbvjvgsx5d6fw9m29"; depends=[MASS]; }; + IsoplotRgui = derive2 { name="IsoplotRgui"; version="6.2"; sha256="12mrfpij1sv6631lx32p1l9dc7g279zw21s13m6b0q4ic1cjsv9v"; depends=[IsoplotR shinylight]; }; IsoriX = derive2 { name="IsoriX"; version="0.9.2"; sha256="1izpxibyz4wwpdr01z4a4zw1r1c528ydznvwrc064j9c55fiz4s2"; depends=[lattice latticeExtra numDeriv rasterVis spaMM terra viridisLite]; }; IsotopeR = derive2 { name="IsotopeR"; version="0.5.4"; sha256="0xgha5alh5y5qfz00rl73q4xlamnmrwij7kckljmy6zgrlrdnl6x"; depends=[colorspace ellipse fgui plotrix runjags]; }; IterativeHardThresholding = derive2 { name="IterativeHardThresholding"; version="1.0.2"; sha256="0vv8v61pzlykdyjivl19q8nr9p22c845y902yljgrvc9ayidczqm"; depends=[Cyclops ParallelLogger]; }; @@ -2557,7 +2606,8 @@ in with self; { JATSdecoder = derive2 { name="JATSdecoder"; version="1.2.0"; sha256="01nqj3w690gn4iqy35v215451agfx1dfgc5vbmmc5wp5r2rk2p09"; depends=[NLP openNLP]; }; JBrowseR = derive2 { name="JBrowseR"; version="0.10.2"; sha256="1v90lzp3md56r4mjskipq4kjvi3szv0qqcdya1hmbjklgmkygvvl"; depends=[cli dplyr htmltools htmlwidgets httpuv ids jsonlite magrittr mime reactR readr stringr]; }; JCRImpactFactor = derive2 { name="JCRImpactFactor"; version="1.0.0"; sha256="1i7853i8k03nq7ax9rypm9qcl5qgyddblgbfjp3yxi1s3a6bkwk1"; depends=[stringr]; }; - JFE = derive2 { name="JFE"; version="2.5.6"; sha256="015c60f1bmglcpspyqsy8wkwinnf8dgzx0xfm96np1c9h8zqfdm6"; depends=[xts]; }; + JDCruncheR = derive2 { name="JDCruncheR"; version="0.2.4"; sha256="08289a1pvhdx1bp76il18z6xr4nfk1pffbbjcwdvr2km147yfvmz"; depends=[XLConnect]; }; + JFE = derive2 { name="JFE"; version="2.5.7"; sha256="06ll163l0qr03vjp3jdlq4g7lff1hi3shmbqicqm9yr00ip94jj6"; depends=[xts]; }; JFM = derive2 { name="JFM"; version="1.0"; sha256="08655vgfb2ll8hwjsj5lsw4849rahn3blisdqn8bwfhclrwd24xn"; depends=[MASS randomcoloR Rcpp RcppArmadillo rgl RockFab Rvcg]; }; JGL = derive2 { name="JGL"; version="2.3.2"; sha256="0zsvr20vaxhkac2mdlqzd12xqpgw4yvx4bkqwgsbvhpl34pz7dy2"; depends=[igraph]; }; JGR = derive2 { name="JGR"; version="1.9-2"; sha256="1rcmbgxwzwhzh5fa0lghjdllcfkpirdavdghvxx5fjysn7a38mjv"; depends=[JavaGD rJava]; }; @@ -2567,14 +2617,14 @@ in with self; { JMH = derive2 { name="JMH"; version="1.0.3"; sha256="1n41vhr07ylqb393bsw8lrv1h77a10qshwfxrkyx2y1hsq1bh3iy"; depends=[caret dplyr MASS nlme Rcpp RcppEigen statmod survival timeROC]; }; JMI = derive2 { name="JMI"; version="0.1.0"; sha256="05phkwfb9v4g9jixlvbj6br7sbi64zvrgjwfr0v87ijddkxc9si9"; depends=[Rcpp RcppArmadillo]; }; JMbayes = derive2 { name="JMbayes"; version="0.8-85"; sha256="0s11jpzflc2zg60g4ffcw23c2f4zz3mzddrc2cl5y43xl2v304lb"; depends=[doParallel foreach Hmisc jagsUI MASS nlme Rcpp RcppArmadillo rstan shiny survival xtable]; }; - JMbayes2 = derive2 { name="JMbayes2"; version="0.4-5"; sha256="0qdfp3r7wfy955f956jhryvxbnnw2zrnkqq931191z2v0xmird97"; depends=[coda ggplot2 GLMMadaptive gridExtra matrixStats nlme parallelly Rcpp RcppArmadillo survival]; }; + JMbayes2 = derive2 { name="JMbayes2"; version="0.5-0"; sha256="13p848ix1581p9yd6dgkifqj7bha8w2m7drkcz718bwmjlm83z61"; depends=[coda ggplot2 GLMMadaptive gridExtra matrixStats nlme parallelly Rcpp RcppArmadillo survival]; }; JMdesign = derive2 { name="JMdesign"; version="1.5"; sha256="12y9g9m38qbvibay1pm0s9zyw5hxczdysm1hxcpjqi265z9wr9wd"; depends=[]; }; JNplots = derive2 { name="JNplots"; version="0.1.1"; sha256="0k1jdy5wdzdswzl6kz9d1r6imj3cqcmkyz7ka1d6pcbysjsj9ynn"; depends=[ape nlme scales]; }; JOPS = derive2 { name="JOPS"; version="0.1.19"; sha256="0qnycf7yd1sas0v6jclmc1y0jq9bslqlf66mqyirpxcs2lsk0327"; depends=[boot colorspace fds fields ggplot2 MASS rpart SemiPar spam SpATS]; }; JOUSBoost = derive2 { name="JOUSBoost"; version="2.1.0"; sha256="0f3rr7aw20nvmlpqrq3wzgmr55lqdqhk3wphpqq7msgvaf1zrcl7"; depends=[doParallel foreach Rcpp rpart]; }; JPEN = derive2 { name="JPEN"; version="1.0"; sha256="12rvp5bmlkwyr1gg336k655hp09gym0d2wwry70c1rz30x1sf2zs"; depends=[mvtnorm]; }; JQL = derive2 { name="JQL"; version="3.6.9"; sha256="0d926hngv4r6zl5f6yai3jwhl9hql2hv6ja3yjgplglkns66g4lh"; depends=[caret pdist randomForest]; }; - JSDNE = derive2 { name="JSDNE"; version="4.2.2"; sha256="1607icsdscn1ryqd2r81s2gh46ddy72grcxzz9vwzmc32msbd1sn"; depends=[dplyr MASS molaR nnet Rvcg]; }; + JSDNE = derive2 { name="JSDNE"; version="4.3.2"; sha256="1j3ish1kfhx8in37l8ljd22qmaqi6wlsjchzwhfi21rhjrynqzkz"; depends=[dplyr MASS molaR nnet Rvcg]; }; JSM = derive2 { name="JSM"; version="1.0.1"; sha256="0vcsay1jpjlfdwykad4hp319swr9lv1ajlcyhmiizwr1ph3f1az9"; depends=[nlme Rcpp RcppEigen statmod survival]; }; JSUparameters = derive2 { name="JSUparameters"; version="1.0.0"; sha256="0jikzazdp6id72d5csplhsa2yrm9cb02f00bfzriyhgfl43v09mh"; depends=[]; }; JSconsole = derive2 { name="JSconsole"; version="0.1.0"; sha256="1jpa48xb7hh4ap25sqrl67rzqra53qhcfwpfgs6hmpjnrld8n3ha"; depends=[rstudioapi V8]; }; @@ -2590,7 +2640,7 @@ in with self; { Jmisc = derive2 { name="Jmisc"; version="0.3.1.1"; sha256="0fcch7rg8gn92855smd7h2andr33h9dnccjy12w2bx0px8rnqa0s"; depends=[]; }; JoF = derive2 { name="JoF"; version="0.1.0"; sha256="1my6fc4awrc822ibsvx3hiz4l49vp8dx0j05v56r7d27xizy8j0j"; depends=[]; }; JoSAE = derive2 { name="JoSAE"; version="0.3.0"; sha256="1vjxzbfs8a7kpmn2lb9dca67d4njmzjr3pl16s0r9ihmmxxwwili"; depends=[nlme]; }; - JointAI = derive2 { name="JointAI"; version="1.0.5"; sha256="1f1dmdrm8i7la2ydlcpnl0gk1yxdgf9x7s802mgp6hjplcrgzf3q"; depends=[coda future MASS mathjaxr mcmcse rjags rlang survival]; }; + JointAI = derive2 { name="JointAI"; version="1.0.6"; sha256="1vckbn4y27bdc6176nnjpwa2wm6kyzxkvndf128jw4871964szp5"; depends=[coda future MASS mathjaxr mcmcse rjags rlang survival]; }; JointFPM = derive2 { name="JointFPM"; version="1.2.0"; sha256="1g6b35i4lvwizg6ji7kg9m7lmi81zz1rrd0qsvssphmbh7i5p58s"; depends=[cli data_table lifecycle matrixStats rlang rmutil rstpm2 statmod survival]; }; Julia = derive2 { name="Julia"; version="1.3.5"; sha256="0ynzxflz92y38z7bl9g8nhrgvz2ay716izpya398b29h4qfb1w4r"; depends=[]; }; JuliaCall = derive2 { name="JuliaCall"; version="0.17.5"; sha256="036rxp2lygvpxpykpxx2lqyyzidzzi95lv6g30n70hzy0agjym4j"; depends=[knitr Rcpp rjson]; }; @@ -2598,18 +2648,21 @@ in with self; { JustifyAlpha = derive2 { name="JustifyAlpha"; version="0.1.1"; sha256="0bd7sn4sn95kal5q2x1q78fsk1mhakr5fax3z6ny2yda2h266af9"; depends=[BayesFactor ggplot2 pwr qpdf shiny shinydashboard stringr Superpower]; }; KCSKNNShiny = derive2 { name="KCSKNNShiny"; version="0.1.0"; sha256="13gzqf3g7vj8cc0xm5902q7lad2way8d0ri1fs01dnv97wmwbxvn"; depends=[caret dplyr FNN rhandsontable shiny]; }; KCSNBShiny = derive2 { name="KCSNBShiny"; version="0.1.0"; sha256="1lv5r9qyvr3dnvcs00jyam0whv64qmv5vphhijlar1xa1g1llwqr"; depends=[caret dplyr e1071 rhandsontable shiny]; }; + KEPTED = derive2 { name="KEPTED"; version="0.2.0"; sha256="0i2sdz4sk558h4nwi82ing1zx34m93v59lr81ska57xiw77y7swy"; depends=[CompQuadForm cubature expm]; }; KERE = derive2 { name="KERE"; version="1.0.0"; sha256="1b16cb3ihcsp9jffmd45sd7ia4pibikmj62ad344wmq22q4fpliy"; depends=[]; }; KFAS = derive2 { name="KFAS"; version="1.5.1"; sha256="1kswy3ahd7ng8jhd1nl1x454ywqnlsgpxnzz0q2rll7hsl3xr4hj"; depends=[]; }; KFPCA = derive2 { name="KFPCA"; version="2.0"; sha256="1dzywxnp3ywg3zbvmacj3a1i7w5cg1g93a9ncl7ddwb7wqpzg6x1"; depends=[fda fdapace kader pracma]; }; KFPLS = derive2 { name="KFPLS"; version="1.0"; sha256="1bdba738mhsa6yw515fyaw96pycvflw596fh9dkhhns498lg7356"; depends=[fda]; }; KGode = derive2 { name="KGode"; version="1.0.4"; sha256="0q39x34rwya3pqhvly1g0n2ykzvwrwdpdnp3y3ya9cyai63l2sgn"; depends=[mvtnorm pracma pspline R6]; }; KHQ = derive2 { name="KHQ"; version="0.2.0"; sha256="1vg0p3igbw81fbp2gli9msqbvymbn0qf3g3y0nb3q51d7wfax0qd"; depends=[magrittr openxlsx]; }; - KINSIMU = derive2 { name="KINSIMU"; version="0.1.2"; sha256="0chsjpg0irxk7m7hqb7fmv60cdc7fdjmii64pfadjbnmzzzbhbq1"; depends=[]; }; - KLINK = derive2 { name="KLINK"; version="0.7.2"; sha256="03aqpjwb0iqw7papvzx0vz2811rgang1p8sy7zr0qkrlcn7i3fw2"; depends=[forrel gt openxlsx pedFamilias pedmut pedprobr pedtools shiny shinydashboard verbalisr zip]; }; + KINSIMU = derive2 { name="KINSIMU"; version="0.1.2-2"; sha256="1skhrrlskasysfvr1dmrsyji1zb897vx1zcb07hwzm8lrzda7fd7"; depends=[]; }; + KLINK = derive2 { name="KLINK"; version="0.7.3"; sha256="1q2znry97rly1nj7crqqfm5c41sxcia6i4b080ccdwzap26pm17i"; depends=[forrel gt openxlsx pedFamilias pedmut pedprobr pedtools shiny shinydashboard verbalisr zip]; }; KLexp = derive2 { name="KLexp"; version="1.0.0"; sha256="1knnqzzywh6zcj60133a5bfzqqxmf86gn4m1kggm7gzv1k9mx90b"; depends=[glmnet]; }; KMD = derive2 { name="KMD"; version="0.1.0"; sha256="0sgcfh5b4dl1gy3dxsdsqgmyfrd6kqrzvxv9g4slskwyrjsirsp5"; depends=[boot data_table igraph mlpack proxy RANN]; }; + KMEANS_KNN = derive2 { name="KMEANS.KNN"; version="0.1.0"; sha256="1973lrf5j63za86bjc8klv78gi1kiwrbiqf86675kdv6qf69ik44"; depends=[assertthat caret class cluster factoextra ggplot2]; }; + KMLtoSHAPE = derive2 { name="KMLtoSHAPE"; version="0.1.0"; sha256="1qbm06cn6jm523zxvj0f25c7x78vfsw7a92igwlnwfs38lii25vf"; depends=[raster sf stringr]; }; KMsurv = derive2 { name="KMsurv"; version="0.1-5"; sha256="0hi5vvk584rl70gbrr75w9hc775xmbxnaig0dd6hlpi4071pnqjm"; depends=[]; }; - KMunicate = derive2 { name="KMunicate"; version="0.2.4"; sha256="13pkhyzv47zp1zz43fs0frbjgbjylyandhrfnzzwryxpchrghpqh"; depends=[checkmate cowplot ggplot2 pammtools survival tidyr]; }; + KMunicate = derive2 { name="KMunicate"; version="0.2.5"; sha256="0lfxxqrgh23i5gm0mwhq14kkzq5vxfnn3s8ydmfjvhphif322w4n"; depends=[checkmate cowplot ggplot2 pammtools survival tidyr]; }; KNNShiny = derive2 { name="KNNShiny"; version="0.1.0"; sha256="16zm8bhdivaap3mvhdx2qn1b1j2iqyarclb0y2qd1n4viwcfm9c1"; depends=[caret dplyr e1071 FNN psycho rhandsontable rmarkdown shiny]; }; KODAMA = derive2 { name="KODAMA"; version="2.4"; sha256="1rw5xjv5sblhj5mr31hgv472gial5bl4f288db07ysgkjqsymwkq"; depends=[minerva Rcpp RcppArmadillo Rtsne umap]; }; KOGMWU = derive2 { name="KOGMWU"; version="1.2"; sha256="1vz0099gp1r10n7w4p480l8rswdw100sns196d9xin2ibmmd2fx9"; depends=[pheatmap]; }; @@ -2624,7 +2677,7 @@ in with self; { KSEAapp = derive2 { name="KSEAapp"; version="0.99.0"; sha256="1gfgpa2d32y6bzvf4ww70sm7niq34sqmyrhi0phlqxshqq9xviqc"; depends=[gplots]; }; KSPM = derive2 { name="KSPM"; version="0.2.1"; sha256="13fq0d016z6880rr93y918l27fsxd5dxc6gbdnkma5sgsjni5cxh"; depends=[CompQuadForm DEoptim expm]; }; KScorrect = derive2 { name="KScorrect"; version="1.4.0"; sha256="1khvwc610yp3fd4fn0wcgqpzxg9g7sicjjmwvfcahs8qxn3m5vfa"; depends=[doParallel foreach iterators MASS mclust]; }; - KSgeneral = derive2 { name="KSgeneral"; version="1.1.3"; sha256="1q17ccs35yznli9zkqp5x7sx0i0ckryzcpwjyliwsqjx3bia9p32"; depends=[dgof MASS Rcpp]; }; + KSgeneral = derive2 { name="KSgeneral"; version="2.0.0"; sha256="0m3qr65366vqb8pbjidmvlcz5prwmrzcrcs0scsnqcyvwrlwyf0l"; depends=[dgof MASS Rcpp]; }; KTensorGraphs = derive2 { name="KTensorGraphs"; version="1.1"; sha256="1szl66ix6c6vb0zzyp404psglx3lk125903zc4za0qfzcic7a9p6"; depends=[]; }; KappaGUI = derive2 { name="KappaGUI"; version="2.0.2"; sha256="0vklny804xpd9r60j4a01j2gak8jizwjw0abf7yvbcalv3zbpb3k"; depends=[irr shiny]; }; KaradaColor = derive2 { name="KaradaColor"; version="0.1.5"; sha256="0hndz1inl4s7vgkg570npk73zh9hglr7kwa1yrkgdsk5lf8l8z4m"; depends=[crayon ggplot2]; }; @@ -2634,18 +2687,18 @@ in with self; { Kcop = derive2 { name="Kcop"; version="1.0.0"; sha256="0p9ik4z2jc2ib70v8lxxa40f13jbqgq6bb9s7yx335na9l43h1j8"; depends=[copula dplyr gtools orthopolynom]; }; KenSyn = derive2 { name="KenSyn"; version="0.3"; sha256="0s8sq3caxn4swac81196dp52r9lbmxb3ni45yaxh53f5g34slsi8"; depends=[lme4 metafor nlme]; }; Kendall = derive2 { name="Kendall"; version="2.2.1"; sha256="1xmk95l4i3kj9jn0xh1chi2rj322k29jq14ra5pa7316gwf9vx2m"; depends=[boot]; }; - KernSmooth = derive2 { name="KernSmooth"; version="2.23-22"; sha256="1sblhl7b9d3m6034xd3254ddkj9ssqxawknzksfbgjh68s849q3n"; depends=[]; }; + KernSmooth = derive2 { name="KernSmooth"; version="2.23-24"; sha256="0pxc53sw9f4hhxnl3zkalkkk0fvzcfxw7c4ibrb95zbzahwyrcyh"; depends=[]; }; KernSmoothIRT = derive2 { name="KernSmoothIRT"; version="6.4"; sha256="0qqlmcd04m89pmhrbmxxx4lzzb6sksgrm0j8x7fs5r0sxdqy6rcp"; depends=[plotrix Rcpp rgl]; }; KernelKnn = derive2 { name="KernelKnn"; version="1.1.5"; sha256="1b361qqkicbdwcmh7fj8rfqqj5yaf2ygmh4hwy5qxbpw8zkagccj"; depends=[Rcpp RcppArmadillo]; }; Kernelheaping = derive2 { name="Kernelheaping"; version="2.3.0"; sha256="0nd8kbprpm2jrpnqr4xb4z8wklv5js2y3kdpjc2q0ay229hf85j8"; depends=[dplyr fastmatch fitdistrplus GB2 ks magrittr MASS mvtnorm plyr sp sparr]; }; Keyboard = derive2 { name="Keyboard"; version="0.1.3"; sha256="1yfcn1r0zngc1nlj5axqps8an66p1q1qmxwagxq2q15d9qipb5wh"; depends=[ggplot2 Iso Rcpp]; }; KinMixLite = derive2 { name="KinMixLite"; version="2.1.0"; sha256="17kjb12r35b42ghkv6mp0jk115gn2dlwc8cdf92cm9jjn4k9am9a"; depends=[DNAmixturesLite gRaven gRbase Matrix numDeriv pedtools ribd Rsolnp statnet_common]; }; KingCountyHouses = derive2 { name="KingCountyHouses"; version="0.1.0"; sha256="17l415v290lm99rsifpk6324mm1sk79ns4cvjkyh9ibj8n7l44c1"; depends=[]; }; - Kira = derive2 { name="Kira"; version="1.0.1"; sha256="1hs782is31j4d19737lwdqaxdvprws9lv0x4v3wn07pcsais5wki"; depends=[MASS]; }; + Kira = derive2 { name="Kira"; version="1.0.3"; sha256="02h80rmrkggmavbvz1d6p3q7gllf8m6g7vx2k01hxy1c8l237i2b"; depends=[MASS]; }; Kmedians = derive2 { name="Kmedians"; version="2.2.0"; sha256="0bsbwxv0a9b6g89h7v876hm5p97viwbczz851ngjv5li5qzvlpxs"; depends=[capushe doParallel foreach genieclust ggplot2 Gmedian mvtnorm reshape2]; }; KnapsackSampling = derive2 { name="KnapsackSampling"; version="0.1.1"; sha256="1yiakgzmh72lans1mwp42lch9x9gg2g6ww2hrjdma3w1bbsidlwf"; depends=[lpSolve]; }; KneeArrower = derive2 { name="KneeArrower"; version="1.0.0"; sha256="1blmim4l7375psa9c3wbpksywj5nfbawly4001n6311wcv4dybl5"; depends=[signal]; }; - KnockoffHybrid = derive2 { name="KnockoffHybrid"; version="1.0.0"; sha256="0fzymcyb40v3bgd39a6nfxf4wrs171k655rx779q3vxb75nlnlnb"; depends=[glmnet SPAtest]; }; + KnockoffHybrid = derive2 { name="KnockoffHybrid"; version="1.0.1"; sha256="0ziqnhs2ipnzrh4ndjppcf2w3s13mwsza7w2s5dgfd70i0f6nk7v"; depends=[glmnet SPAtest]; }; KnockoffScreen = derive2 { name="KnockoffScreen"; version="0.3.0"; sha256="01r04d9ha9l5pkz3lwdcb5x5qqwk8vil9avnbnfn76wg63mdfhbk"; depends=[bigmemory CompQuadForm data_table irlba Matrix seqminer SPAtest]; }; KnockoffTrio = derive2 { name="KnockoffTrio"; version="1.0.2"; sha256="198sy0ww4cc59yqgf66vg6r5g52wmgpn51v43cm51b3pi7g7klar"; depends=[]; }; KnowBR = derive2 { name="KnowBR"; version="2.2"; sha256="1w78rmrh4vgvgv3xf0s7w0zcw3y33l1h1gz6sma87xj8awpsp2l2"; depends=[fossil mgcv plotrix sp vegan]; }; @@ -2656,20 +2709,21 @@ in with self; { KrigInv = derive2 { name="KrigInv"; version="1.4.2"; sha256="01i953b0xrqrwbgzv8giz4dmcbc18jni9whhkmpg8sxvhqac59ns"; depends=[anMC DiceKriging mvtnorm pbivnorm randtoolbox rgenoud]; }; Kurt = derive2 { name="Kurt"; version="1.1"; sha256="0fmd3m6pgsyf614wf11yclxl9zsac5jrffci5c2514wvs1slqw1p"; depends=[expm labstatR matrixcalc polynom]; }; L0Learn = derive2 { name="L0Learn"; version="2.1.0"; sha256="050r2rqmqgwmal53d82vi0nhnzzrm4q8mqz0pbpj77blflbqy740"; depends=[ggplot2 MASS Matrix Rcpp RcppArmadillo reshape2]; }; - L1centrality = derive2 { name="L1centrality"; version="0.0.3"; sha256="1cg80g5s4hmjk6qrhf55mw33cr91agj5shr938jigp59nc3rcr7s"; depends=[igraph Rcpp withr]; }; - L1pack = derive2 { name="L1pack"; version="0.41-24"; sha256="1zbiiawvm1jfmsab7kxz2rr969xbz2nxxx4piadp5s5ln8v4jxil"; depends=[fastmatrix]; }; + L1centrality = derive2 { name="L1centrality"; version="0.1.1"; sha256="1qjvyplkc957mhcyd4fly6il93mm5bj2v6azmr4vqc31lpx7j295"; depends=[igraph Rcpp withr]; }; + L1pack = derive2 { name="L1pack"; version="0.41-245"; sha256="1frhma6ipycgiq23fsbcnii2rqw53xpd202d7sjpqhi8xpvkawsc"; depends=[fastmatrix]; }; L2DensityGoFtest = derive2 { name="L2DensityGoFtest"; version="0.6.0"; sha256="1fzfqfq77rf4hfrh1idb2nb67mwk9lwypxhr2qc1hiidvk060lq0"; depends=[boot fGarch mvtnorm nor1mix]; }; L2E = derive2 { name="L2E"; version="2.0"; sha256="1ar8jmi7nddp6f5rfh8zvh8w8zkigdf1zjzdr5fz8zqj2ny5hy30"; depends=[cobs isotone Matrix ncvreg osqp robustbase signal]; }; L2hdchange = derive2 { name="L2hdchange"; version="1.0"; sha256="18gh6dc05w5ac7gdy202v3drb6258k8qnk73335hpwaiswp7i328"; depends=[]; }; - LA = derive2 { name="LA"; version="2.2"; sha256="12fhkrjcj5304pdpgmf8iilxgy5vnixqj3zb87csa4m22ibpkah4"; depends=[Rcpp RcppArmadillo]; }; + LA = derive2 { name="LA"; version="2.3"; sha256="098gqnjw2zfl2s0hmbci8kahr9mjz9fh5ll3blnw2wc2ikn5n152"; depends=[Rcpp RcppArmadillo]; }; LAD = derive2 { name="LAD"; version="0.1.0"; sha256="0qms5w9fx0hqjiq2wirckay6x9v0h99h6dhahfkba4vcfa8vxnkx"; depends=[cowplot dplyr ggplot2 magrittr purrr rlang tidyr tidyselect]; }; LAGOSNE = derive2 { name="LAGOSNE"; version="2.0.3"; sha256="03x2ghcpl1ibpic4msb1n3n8fqbxjnv357phlb2a7y5lmy4fb1ny"; depends=[curl dplyr httr lazyeval magrittr memoise progress purrr qs rappdirs rlang sf stringr tibble tidyr]; }; LAIr = derive2 { name="LAIr"; version="0.3.0"; sha256="092dk6fhp0fkd2fxhwqxfhrm4im1z8dvyd9kg4m2dbyyn17h5i1c"; depends=[dplyr purrr stringr terra]; }; LAM = derive2 { name="LAM"; version="0.6-19"; sha256="1bns8m48rlkv1d87wvhlvkplr8kpm2rda5wb9xcvjqr7bf65nk8b"; depends=[CDM Rcpp RcppArmadillo sirt]; }; LARF = derive2 { name="LARF"; version="1.4"; sha256="1sqib7smgjacn07ishwls1nlbvcb6fpp1vhrjwf9g4xf9jk30i8h"; depends=[Formula]; }; LARisk = derive2 { name="LARisk"; version="1.0.0"; sha256="13d008v8aypqlx35bf16y7rcfcv5qnbsi8q0zpfcl03rzxmqpb8b"; depends=[dplyr Rcpp]; }; + LATERmodel = derive2 { name="LATERmodel"; version="0.2.0"; sha256="1dik3gzh3hm9wd32bbyj7jyks3aca32j3bbigjshlv5i3140k2nn"; depends=[dplyr ggplot2 moments rlang tibble]; }; LAWBL = derive2 { name="LAWBL"; version="1.5.0"; sha256="0vqjp00nviyl6ghbjn2ayj3k0x2a7hihff0w0x7xwqv3z8x0mh8g"; depends=[coda MASS]; }; - LBI = derive2 { name="LBI"; version="0.1.0"; sha256="03s4l90ffwfg4516m1bsyyylzwv1pbaq19xvkyprkzz1mjwmkxqj"; depends=[]; }; + LBI = derive2 { name="LBI"; version="0.1.2"; sha256="18hnvhgl2lji5jawxir1fw7qcmky48qnh8xb5gmnxff8mplwjk0c"; depends=[]; }; LBPG = derive2 { name="LBPG"; version="0.1.2"; sha256="01sky2388ylx960vd5lnj48an2n82fd909cnm11v91kklyvkxxlc"; depends=[gsl]; }; LBSPR = derive2 { name="LBSPR"; version="0.1.6"; sha256="075wcjhvp90fj37ihrplnrc0vy8wpav5qivkw1rgv00fa8xj7pw0"; depends=[dplyr ggplot2 gridExtra plotrix RColorBrewer Rcpp shiny tidyr]; }; LCA = derive2 { name="LCA"; version="0.1.1"; sha256="014kih33y8b9nls0pcigw68jbz7vgnq8w1xbwm2d37g1m5y6xlyw"; depends=[]; }; @@ -2692,10 +2746,9 @@ in with self; { LDNN = derive2 { name="LDNN"; version="1.10"; sha256="092mnjdmc0l471vd8nym09r9sfx1scp4x6nh22mj6413vaicagq0"; depends=[devtools keras reticulate tensorflow]; }; LDRTools = derive2 { name="LDRTools"; version="0.2-2"; sha256="0ll6przymxa98drwp0lq4mlar4blj6cig91mf2avifmp2aqfmk6c"; depends=[]; }; LDcorSV = derive2 { name="LDcorSV"; version="1.3.3"; sha256="0wr8i9q9p48vpcia8v3rd8bb2pfijr9r6kg9x26k4wncpg7n83cp"; depends=[]; }; - LDlinkR = derive2 { name="LDlinkR"; version="1.3.0"; sha256="0al36cdq7g14fqvxb1c26ih269704f8m0kyky526ravbgf0ydnw1"; depends=[httr]; }; - LEANR = derive2 { name="LEANR"; version="1.4.9"; sha256="053xy13ys5hibafdnbkwqdk36hw7dhanp4frfacpfpn5f9nfh95r"; depends=[foreach igraph]; }; + LDlinkR = derive2 { name="LDlinkR"; version="1.4.0"; sha256="0a9j6yyws6n3989ig53nzgadrhjbdj9y2cyr9q0f1svsi6h80lxj"; depends=[httr]; }; LEGIT = derive2 { name="LEGIT"; version="1.4.1"; sha256="0rwcbckkpmm849yl4rrk97ai31wb89sizbp7974rrfrjb707xl4i"; depends=[boot doSNOW foreach formula_tools glmnet Hmisc iterators lme4 pROC RColorBrewer snow]; }; - LFApp = derive2 { name="LFApp"; version="1.4"; sha256="1pxblh8v63n2gcsz1wbxv66aylaz2q61zw2w3l3r9z515kgmid77"; depends=[DT EBImage fs ggplot2 mgcv shiny shinyFiles shinyjs shinyMobile shinythemes]; }; + LFApp = derive2 { name="LFApp"; version="1.4.1"; sha256="1gdapv0nxwxpg1sfc759lh9x8d4whp7h3102xb95sxi3h9xjaqin"; depends=[DT EBImage fs ggplot2 mgcv shiny shinyFiles shinyjs shinyMobile shinythemes]; }; LFDR_MLE = derive2 { name="LFDR.MLE"; version="1.0.1"; sha256="0ykcd24w71zxb53nch041g7xh83gmg1ia3sysdpn0yzkhm0w7cdl"; depends=[]; }; LFDR_MME = derive2 { name="LFDR.MME"; version="1.0"; sha256="1ln0s3ki37cz1a7r96xn0zqw42im7fcanmz2vjk5zycshb423y22"; depends=[]; }; LFDREmpiricalBayes = derive2 { name="LFDREmpiricalBayes"; version="1.0"; sha256="1imw3djmbpdyplv9dmdzzirp9imk88j0kcxcyfh8yr9ywgd77x6b"; depends=[matrixStats R6]; }; @@ -2713,12 +2766,12 @@ in with self; { LMD = derive2 { name="LMD"; version="1.0.0"; sha256="0yizv25ssw9a2ydwlabgx6rfksi3bfz6ay4508fz21j18sq49dfy"; depends=[EMD ggplot2 patchwork]; }; LMERConvenienceFunctions = derive2 { name="LMERConvenienceFunctions"; version="3.0"; sha256="0jg889qh5a9wdi01yiw6z7kivs9dzh5dcq39f4zifdpqzglhshzb"; depends=[fields LCFdata lme4 Matrix mgcv]; }; LMMELSM = derive2 { name="LMMELSM"; version="0.2.0"; sha256="0m57hsfpgxch5lmpdxqp720jv18as12drpx1p5x3y4w0navslslz"; depends=[BH Formula loo MASS nlme Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; - LMMsolver = derive2 { name="LMMsolver"; version="1.0.6"; sha256="0507xrzsm2v8rakp9zwdzc250p92xkicy8anp72pryvj11lszqcw"; depends=[agridat ggplot2 maps Matrix Rcpp sf spam]; }; - LMMstar = derive2 { name="LMMstar"; version="1.0.1"; sha256="1z02lx671k94gj5dh1qbk6sx1698wb2avgiagarnkjc4r1il2al5"; depends=[copula doParallel emmeans foreach ggplot2 lava Matrix multcomp nlme numDeriv pbapply rlang sandwich scales]; }; + LMMsolver = derive2 { name="LMMsolver"; version="1.0.7"; sha256="0vzgbq2hpj65c7y1gkxz80smrl693basffkvv9gb7l29ifp10gs5"; depends=[agridat ggplot2 maps Matrix Rcpp sf spam]; }; + LMMstar = derive2 { name="LMMstar"; version="1.1.0"; sha256="1hfj69iq9ina23kyz4xvp1xfvg4klzhi6kvfqng4amazlh1vncb1"; depends=[copula doParallel foreach ggplot2 lava Matrix multcomp nlme numDeriv rlang]; }; LMN = derive2 { name="LMN"; version="1.1.3"; sha256="0qnc74m2g4fl1cb39xmanvv1hwcnk0169xn4h4phlhxgr0313m63"; depends=[Rcpp RcppEigen SuperGauss]; }; LMest = derive2 { name="LMest"; version="3.1.2"; sha256="0a9lch9bylhy5r4v865lwzzz9qqi98na8bfnr5ga8kzy7akbnza0"; depends=[diagram Formula MASS mclust mix MultiLCIRT mvtnorm scatterplot3d]; }; LMfilteR = derive2 { name="LMfilteR"; version="0.1.3.1"; sha256="1ncx8kqnh43zxffy7rba1xjb3ar3qi1rzmnwpl6vldijajmnjrv8"; depends=[MASS]; }; - LMoFit = derive2 { name="LMoFit"; version="0.1.6"; sha256="10xiaa5h8c0sq9z70yjs29z8jnjyqgybdv33d6s2100h3n46jd31"; depends=[ggplot2 lmom pracma sf]; }; + LMoFit = derive2 { name="LMoFit"; version="0.1.7"; sha256="1lpn2b4fi2vlqcghbq6fzl4cj4w837v950cxxcrafky15gwzzn8m"; depends=[ggplot2 lmom pracma sf]; }; LNIRT = derive2 { name="LNIRT"; version="0.5.1"; sha256="0w32qvz5mhzg6f8050p57v26amn6d2il2icjfiypf7yi3gsx7w09"; depends=[MASS]; }; LNPar = derive2 { name="LNPar"; version="0.1.0"; sha256="1pgal49pcv2g9jvn39am42d22cwm67pc2pql5wyca2c3i4jx0sz9"; depends=[Rdpack]; }; LOCUS = derive2 { name="LOCUS"; version="1.0"; sha256="16hfgj7ilwqlywy3xhfag4fwrbbfqvlmwi55chskc8s2km997pdb"; depends=[far ica MASS]; }; @@ -2731,7 +2784,7 @@ in with self; { LPCM = derive2 { name="LPCM"; version="0.47-4"; sha256="0vjdnrc4jcp8l12x57qdj21k325n98wrr1x7f76z3s5fwk2s1kwg"; depends=[]; }; LPGraph = derive2 { name="LPGraph"; version="2.1"; sha256="1d2kslravi3v9kf6sdabwfpa9s9xxqj3s3d7f7qfcrpfydqixq1q"; depends=[car PMA]; }; LPKsample = derive2 { name="LPKsample"; version="2.1"; sha256="0ifhx8w9f6sacmnck2g7i7r742i8bwwzf0rgajw3klw2wni9ikqx"; depends=[apcluster igraph LPGraph mclust]; }; - LPM = derive2 { name="LPM"; version="3.0"; sha256="13k0w5183jvwa3gdilrd9fgnxk9n4sf529l1ddl04ymk7f0ar7wb"; depends=[fracdiff MASS powdist]; }; + LPM = derive2 { name="LPM"; version="3.2"; sha256="0xyyfvaa65wi3vz252y59hv4018bw6xwa24rs9d6w53b3slr7pnn"; depends=[fracdiff MASS powdist]; }; LPRelevance = derive2 { name="LPRelevance"; version="3.3"; sha256="1harwhgqd9swyljijj7bfir176an92kdy8mik1q0nbc061jdgx0i"; depends=[BayesGOF Bolstad2 caret ggplot2 glmnet leaps locfdr MASS polynom reshape2]; }; LPS = derive2 { name="LPS"; version="1.0.16"; sha256="192iz2gakrddqc4h1y4swj3m3dl03x9mvj3i1dl7jnj18dxik24n"; depends=[]; }; LPWC = derive2 { name="LPWC"; version="1.0.0"; sha256="0jgz8rkhhsdiwz7jq568axcsfwlkzdpwssr76zx33r0gz6mf3lln"; depends=[nleqslv]; }; @@ -2748,6 +2801,7 @@ in with self; { LSAmitR = derive2 { name="LSAmitR"; version="1.0-3"; sha256="1c2i9wy72v9923ngkipwmc49nc6r3znibadgffzkhci583ib55ym"; depends=[Hmisc lme4]; }; LSD = derive2 { name="LSD"; version="4.1-0"; sha256="17pbdlcbhzf3v7l42mjikln1ga5xjp5r78gjg6a88iahk0lwwlvm"; depends=[]; }; LSDinterface = derive2 { name="LSDinterface"; version="1.2.1"; sha256="0zp7bgdbcah6hsfqbz7lq6f7g8xcqhjsr7pjpwjf9brnmy0l7xki"; depends=[abind boot TSdist]; }; + LSDirf = derive2 { name="LSDirf"; version="0.1.3"; sha256="0malgsq6gdc53iylkbbndn11b9pf5l7wdaj406ips2k42idfzk91"; depends=[abind boot digest gplots partykit randomForest]; }; LSDsensitivity = derive2 { name="LSDsensitivity"; version="1.2.3"; sha256="1qq19f7k6klq7xpa1iq6spm8kbiy229r2wbwkng6rkn7jj2kcd70"; depends=[abind car DiceKriging diptest kSamples lawstat LSDinterface randtoolbox rgenoud sensitivity tseries]; }; LSE = derive2 { name="LSE"; version="1.0.0"; sha256="01qj0zasv7dbwg0qxryz1d5jp4rapvnm9i6a4jd7c4pxqdm11j7y"; depends=[MASS pracma]; }; LSMRealOptions = derive2 { name="LSMRealOptions"; version="0.2.1"; sha256="0paa5yahpyr8jpgy8aqk2fcixdny6ip09vqm8varvpiqfxrjd6ww"; depends=[]; }; @@ -2761,7 +2815,8 @@ in with self; { LSWPlib = derive2 { name="LSWPlib"; version="0.1.0"; sha256="1z4lcpmbm3wdzbi04flvspkimk4jfhjqi5pd0ab4pbb0ii1z26hs"; depends=[waveslim wavethresh]; }; LSX = derive2 { name="LSX"; version="1.4.0"; sha256="1qch23k8qs9v19npsh90nxv8wznp1lqga8k995117vsjj8h7i7s3"; depends=[digest ggplot2 ggrepel irlba locfit Matrix proxyC quanteda quanteda_textstats reshape2 rsparse RSpectra rsvd stringi]; }; LTAR = derive2 { name="LTAR"; version="0.1.0"; sha256="0jn0fym0v6j9c7pam1samafph9fiqrdr141n3mqj9xks0vaqrqqh"; depends=[gsignal rTensor rTensor2 vars]; }; - LTASR = derive2 { name="LTASR"; version="0.1.2"; sha256="1cq00w9pg4mmgsg7ydm9azr0f9hgxa7vskpfrmh90j6xixqmpn4c"; depends=[dplyr knitr lubridate magrittr purrr readr rlang stringr tidyr XML zoo]; }; + LTASR = derive2 { name="LTASR"; version="0.1.3"; sha256="1dab18np0jkb9s8lkrmsk52h0f714ry851kvbnqs2kdl3zrsrl2f"; depends=[dplyr knitr lubridate magrittr purrr readr rlang stringr tidyr XML zoo]; }; + LTCDM = derive2 { name="LTCDM"; version="1.0.0"; sha256="0q9lj69vpkyc6a40m9xj46qi5h8h2r6rl4k49bs3z19661gcxydd"; depends=[GDINA ggplot2 ggpubr ggsignif]; }; LTFHPlus = derive2 { name="LTFHPlus"; version="2.1.1"; sha256="0f8xww6n2r54c26idi6ixfk89dff7c14dljvpaa71yxm0rb0isff"; depends=[batchmeans dplyr future future_apply igraph purrr Rcpp rlang stringr tibble tidyr tidyselect tmvtnorm xgboost]; }; LTPDvar = derive2 { name="LTPDvar"; version="1.2.1"; sha256="0sdsdx71mpian7gfw7brkzyjjr7bai7dsdifwnib3jpq9p7w7n84"; depends=[]; }; LTRCforests = derive2 { name="LTRCforests"; version="0.7.0"; sha256="13ypp0fyca536bs8mlg1a3f4zp03788vg7g3yyh1xy2r0q66xb4g"; depends=[ipred partykit prodlim survival]; }; @@ -2772,6 +2827,7 @@ in with self; { LWFBrook90R = derive2 { name="LWFBrook90R"; version="0.5.3"; sha256="10fr3p6lgym5dlz92867yq1drv2ygx4nq8zkap5756khv0drf8za"; depends=[data_table doFuture foreach future iterators parallelly progressr vegperiod]; }; LZeroSpikeInference = derive2 { name="LZeroSpikeInference"; version="1.0.3"; sha256="15x29afaq13iwlj66h97k3kczg9rfgp6i9d76rji58hfgh8i8by6"; depends=[]; }; LaF = derive2 { name="LaF"; version="0.8.4"; sha256="1mj010bl4ql0hm33vl0dd08s9dab11y9fa32nsqs6kbb22gjzk6p"; depends=[Rcpp]; }; + LaMa = derive2 { name="LaMa"; version="1.0.0"; sha256="02s13hpkw9h123wmcgawypqrskd0ivciwabv9djw9l66yk79rjix"; depends=[mgcv Rcpp RcppArmadillo]; }; LabApplStat = derive2 { name="LabApplStat"; version="1.4.4"; sha256="0wiyfrk5dfd2djgg461qxhk7zrpwhiagkjcr36w7fbrgibbnmm54"; depends=[emmeans ggplot2 ggraph vctrs]; }; LabRS = derive2 { name="LabRS"; version="0.1.0"; sha256="1a9qafimia83qldsif5wfqx273mvqbx22p5i0hg8n4jvj4vzpy2w"; depends=[knitr]; }; LabourMarketAreas = derive2 { name="LabourMarketAreas"; version="3.4"; sha256="0cifbfijrb80q8xsj7jc6klv78k7sf820d2g5ag2i1lk1vxahwc4"; depends=[data_table sf sp spdep tmap]; }; @@ -2799,12 +2855,12 @@ in with self; { LearnBayes = derive2 { name="LearnBayes"; version="2.15.1"; sha256="0ch54v2zz2yyyk0lvn5rfikdmyz1qh9j1wk3585wl8v58mc0h4cv"; depends=[]; }; LearnClust = derive2 { name="LearnClust"; version="1.1"; sha256="0r2ns1bnsygc6jhr83v1ylfp8fkn3j76233zk5cwsxrq0grx5iqs"; depends=[magick]; }; LearnGeom = derive2 { name="LearnGeom"; version="1.5"; sha256="1pnxiwjkdj78p4hkl1lqagmd937q63yncb45fcra28sa9v9psrcs"; depends=[]; }; - LearnPCA = derive2 { name="LearnPCA"; version="0.2.0"; sha256="0b7g12mcmbxrh2zywgk5n4w7ix0pwf074r3ch5ak0h8cwd26zmqz"; depends=[markdown shiny]; }; + LearnPCA = derive2 { name="LearnPCA"; version="0.3.4"; sha256="0ka46pfsr0971d6n1vpx4mmclp00f643cnz6yvssy3ywm1mbx8hm"; depends=[class markdown nnet rpart shiny]; }; LearnSL = derive2 { name="LearnSL"; version="1.0.0"; sha256="0iqw9hj5066yj4ij7v1dfdvn0q3y4wjwwznhilgsyvlbr0lj642b"; depends=[cli]; }; LearningRlab = derive2 { name="LearningRlab"; version="2.4"; sha256="0wjmdmj9c96fz83nnh9np3xlpbgdq7z0bjp020gidyw0cmfjqddf"; depends=[crayon magick]; }; LearningStats = derive2 { name="LearningStats"; version="0.1.0"; sha256="0xrrb6jws4zj2nwnn30g338bib49b7j26v52ym7p2variwllz068"; depends=[data_table haven readODS readxl]; }; - LexFindR = derive2 { name="LexFindR"; version="1.0.2"; sha256="16ikw3s034zqgfcp2hiyhv1nq5kp65wpq1d8fclrlqiabilyk7x4"; depends=[]; }; - LexisNexisTools = derive2 { name="LexisNexisTools"; version="0.3.7"; sha256="1cap4q1afv8mbbjn1n5n6np7s9rjmw1647n8v5k0knwn4a4hchi1"; depends=[data_table pbapply quanteda quanteda_textstats stringdist stringi tibble]; }; + LexFindR = derive2 { name="LexFindR"; version="1.1.0"; sha256="15pvlvgzx05sj69f3g485cabb476a24iaqv4wcwkai95ln5wk2i5"; depends=[]; }; + LexisNexisTools = derive2 { name="LexisNexisTools"; version="1.0.0"; sha256="070swhryb37g73s2gawi6i60zdifkkwrz1zss2irp6cvawip7kxj"; depends=[data_table pbapply quanteda quanteda_textstats stringdist stringi tibble]; }; LexisPlotR = derive2 { name="LexisPlotR"; version="0.4.0"; sha256="0vlm8wcaj3755cbxrfb7ybla9znd2cbklw2xwyyn6r9i4c9xsfih"; depends=[dplyr ggplot2 tidyr]; }; LibOPF = derive2 { name="LibOPF"; version="2.6.2"; sha256="0hkgx2al685353slv5yaqkls56bwci8zc1w6xdfzalfdwna2a7hm"; depends=[]; }; LiblineaR = derive2 { name="LiblineaR"; version="2.10-23"; sha256="0c8sj8gyrfycqi75xxf7fpy5kbffbw3aw3xj34x90sj47vg0sr09"; depends=[]; }; @@ -2817,7 +2873,7 @@ in with self; { Lifertable = derive2 { name="Lifertable"; version="0.0.1"; sha256="0k7mgzhz92mrkhw8p87c4qy84vm3rjj8asm753xxw0h6z7fgvy3c"; depends=[ggplot2 tidyr]; }; LiftTest = derive2 { name="LiftTest"; version="0.2.0"; sha256="097aj0b8gxly3gqvckcl9xcvv60yd06ydagdqzy80zhv4aqgxm5p"; depends=[]; }; LightningR = derive2 { name="LightningR"; version="1.0.2"; sha256="1va673aw2hgir8ybbjad6dhbs8izs1z4jcikwa7qp3mkv0zqd0vq"; depends=[httr R6 RCurl RJSONIO]; }; - LikertMakeR = derive2 { name="LikertMakeR"; version="0.2.0"; sha256="04fzjwlwnqkn2p0jq0jhsjxwcaacq2v1pjllyrhkr1zgfr2qyibf"; depends=[Rcpp RcppArmadillo]; }; + LikertMakeR = derive2 { name="LikertMakeR"; version="0.3.0"; sha256="0hxyrgm88wvaa6b1cggm45f851sg7rzsbcz7745lcl9zmmkw5w1d"; depends=[dplyr gtools Rcpp RcppArmadillo]; }; LilRhino = derive2 { name="LilRhino"; version="1.2.2"; sha256="1b3wbnzqakjxh3c3s4cxf14nnb1vrbvslqcyn9bh0zbw1arf5ixl"; depends=[beepr data_table dplyr e1071 fastmatch FNN ggplot2 keras neuralnet readr SnowballC stringi tm]; }; LimnoPalettes = derive2 { name="LimnoPalettes"; version="0.1.0"; sha256="0qzcx182nn5ygqlsqmxl1r4r0gg89q0qqgk6hk5lvgb5ghf91z3y"; depends=[]; }; LinCal = derive2 { name="LinCal"; version="1.0.1"; sha256="1zxl0p2lj0nnzsxv6lzncswj0czvzxy2islbjvdinjzkkfjm7izb"; depends=[]; }; @@ -2829,8 +2885,8 @@ in with self; { LinkageMapView = derive2 { name="LinkageMapView"; version="2.1.2"; sha256="101g4djzkxgxbn87an2vz4s9nwn8gwz7a3p3wg0y4zpdd1pdp716"; depends=[plotrix qtl RColorBrewer]; }; LinkedGASP = derive2 { name="LinkedGASP"; version="1.0"; sha256="1win1yd8y677rmic531dyd29f49p7pr1r3kbjysvv9syi5nkydyj"; depends=[nloptr spBayes]; }; LinkedMatrix = derive2 { name="LinkedMatrix"; version="1.4.0"; sha256="0p6qjnrljxnj3c5nynmx563vcqhxj4jf7czqdg750h38gjy8qzxi"; depends=[crochet]; }; - LipidMS = derive2 { name="LipidMS"; version="3.0.4"; sha256="0z0zyv1br938nnng0w2k79ymlb9rsz7ayv68a8ll1512in3w04fn"; depends=[CHNOSZ doParallel foreach iterators readMzXmlData scales shiny shinythemes]; }; - LipidomicsR = derive2 { name="LipidomicsR"; version="0.1.6"; sha256="0ipywvqy0983v4cqpp4n8y04g1w8izcx6v960kwh3rklnn1p19ym"; depends=[broom car cowplot dplyr fmsb ggiraph ggplot2 ggplotify ggrepel pheatmap RColorBrewer rcompanion reshape2 scales stringr tidyr tidyselect tidyverse]; }; + LipidMS = derive2 { name="LipidMS"; version="3.0.5"; sha256="1c0dq1b5ns4kmvdf3viam7g7p5bgviqw1z967nkjslxiyxsjrvki"; depends=[CHNOSZ doParallel foreach iterators readMzXmlData scales shiny shinythemes]; }; + LipidomicsR = derive2 { name="LipidomicsR"; version="0.3.6"; sha256="1mg0lwmhb4rak6gzyypn6nbd8fdgkpxpksgf0vcagh3zlrynshp7"; depends=[broom car cowplot dplyr fmsb ggforce ggiraph ggplot2 ggplotify ggrepel ggsci pheatmap RColorBrewer rcompanion reshape2 scales stringr tidyr tidyselect tidyverse]; }; LipinskiFilters = derive2 { name="LipinskiFilters"; version="1.0.1"; sha256="0dfl3rww7x3n6a6d4qb3cyq4qwnx7bhvgw2r5w5hzc7ydl62mbwj"; depends=[cowplot ggplot2 itertools knitr rcdk]; }; Lmoments = derive2 { name="Lmoments"; version="1.3-1"; sha256="0pc63bj9a8hzr5m3yssrc4kin39fffwkl8rggs3sagzr12d4i7bw"; depends=[Rcpp RcppArmadillo]; }; LncFinder = derive2 { name="LncFinder"; version="1.1.5"; sha256="0mb41fjph4svn2amdx6fb2j8pzgll17c0xxwnsan9vjipnmj59hi"; depends=[caret e1071 seqinr]; }; @@ -2842,7 +2898,6 @@ in with self; { LocalControl = derive2 { name="LocalControl"; version="1.1.3"; sha256="0pi5z3i5hmb8nrqg6nyqrd4hx80xjgc5m3ra1z5r8rvjhw4mz0ik"; depends=[cluster gss lattice Rcpp]; }; LocalCop = derive2 { name="LocalCop"; version="0.0.1"; sha256="0cjp2ws87ys3hf18i9hha5rs2c1k8jfya7vqkp1lygmzccvan1j4"; depends=[RcppEigen TMB VineCopula]; }; Lock5Data = derive2 { name="Lock5Data"; version="3.0.0"; sha256="1407vkcdphy5pb4sgy2ms36vjffiwg2l2753gbszm9wv2m0wrnv4"; depends=[]; }; - Lock5withR = derive2 { name="Lock5withR"; version="1.2.2"; sha256="10x3i11pb4cig4pgfmw9984na5zjbg7d41y6crakiimf53ihx0c2"; depends=[]; }; LogConcDEAD = derive2 { name="LogConcDEAD"; version="1.6-9"; sha256="0m744byjlf5wrpg5pzi4229h3gdzv88bxfr60mgpg9qy4l6r1p2p"; depends=[MASS mclust mvtnorm]; }; LogRegEquiv = derive2 { name="LogRegEquiv"; version="0.1.5"; sha256="1j23w3fmd2swk2mzbmsq7hy878cm7cs1li65srjc9m79az9vgr3h"; depends=[]; }; LogicForest = derive2 { name="LogicForest"; version="2.1.1"; sha256="11f64w80a14yqbngajahw397zfa9yx86asylnmszzx8l2qvw307c"; depends=[LogicReg]; }; @@ -2853,25 +2908,24 @@ in with self; { LongDat = derive2 { name="LongDat"; version="1.1.2"; sha256="1rzkb7byd32jqvhf75zyvy0dlkq79aicz8j0x7lk821qiq4dfv6l"; depends=[bestNormalize car dplyr effsize emmeans ggplot2 glmmTMB lme4 magrittr MASS patchwork reshape2 rlang rstatix stringr tibble tidyr]; }; LongMemoryTS = derive2 { name="LongMemoryTS"; version="0.1.0"; sha256="0n378sad8i283vs7q63spdhwpwjly2d5zj15d4v2085j7sc7z8vi"; depends=[fracdiff longmemo mvtnorm partitions Rcpp RcppArmadillo]; }; LongituRF = derive2 { name="LongituRF"; version="0.9"; sha256="0h70g0qhv0rgz40i58ykrcak1wibbvya7fql0v79xkd21217y1av"; depends=[latex2exp mvtnorm randomForest rpart]; }; - LoopAnalyst = derive2 { name="LoopAnalyst"; version="1.2-6"; sha256="1gy9v6qiwkwbwp4snif2imf6zn50ffjrig54ln57c5v5pk3phnvv"; depends=[nlme]; }; + LoopAnalyst = derive2 { name="LoopAnalyst"; version="1.2-7"; sha256="1fp7j1q20xpgysdpyy2z3p1fzrr4bv6mjyb7hn3nh820z0bl554y"; depends=[nlme]; }; LoopDetectR = derive2 { name="LoopDetectR"; version="0.1.2"; sha256="0c65svz9v8z9886awdf9jm3ysk7nc7gk7q2ihpy20fcciiv05b30"; depends=[igraph numDeriv]; }; LoopRig = derive2 { name="LoopRig"; version="0.1.1"; sha256="11rarb9fg8abc4dpd8sd8safqw3v6g8k6rcrg2nw97xppwcz8c6b"; depends=[GenomicRanges IRanges S4Vectors]; }; LorenzRegression = derive2 { name="LorenzRegression"; version="1.0.0"; sha256="1jxz753bcq8b16ncjk6v8c8ylv8brlqd90fdzn9lappm1k4y0r46"; depends=[doParallel foreach GA ggplot2 knitr locpol MASS Rcpp RcppArmadillo Rearrangement]; }; - LotkasLaw = derive2 { name="LotkasLaw"; version="0.0.1.0"; sha256="11kq52yavicimp7ll7ljrs69a5fxf68ydb9md7v6b02iw5mwbmz7"; depends=[]; }; LowRankQP = derive2 { name="LowRankQP"; version="1.0.6"; sha256="0ki7b2y4vcm0cqflf76nqfnfyvljgawnng4ffxqavfj21l8p62kg"; depends=[]; }; LowWAFOMNX = derive2 { name="LowWAFOMNX"; version="1.1.1"; sha256="0f75qsv6pisgvk39yagzfxscnyfsgh63rmhp4gpybpl0pqmjp48x"; depends=[Rcpp RSQLite]; }; LowWAFOMSobol = derive2 { name="LowWAFOMSobol"; version="1.1.1"; sha256="1ym3i2m1am356di9lcp5nfmxq0np3c4bwsv6bbmf7hg02j7dhwi4"; depends=[Rcpp RSQLite]; }; LqG = derive2 { name="LqG"; version="0.1.0"; sha256="08v6qyvg96jn096xvayivywllcja782mg4zi4gcaaq12hhwdhl1m"; depends=[]; }; - Luminescence = derive2 { name="Luminescence"; version="0.9.23"; sha256="1qjmsi2y2wa0yj0zh36hbfa2939q2865s670vnn9p2nd8iz8wyl5"; depends=[bbmle data_table DEoptim httr interp lamW matrixStats mclust minpack_lm Rcpp RcppArmadillo readxl shape XML zoo]; }; + Luminescence = derive2 { name="Luminescence"; version="0.9.24"; sha256="0i4z0pyykvp0kxv5xg2id9p3829wxivvn5lgqickb2xql4rrggp6"; depends=[bbmle data_table DEoptim httr interp lamW matrixStats mclust minpack_lm Rcpp RcppArmadillo readxl shape XML zoo]; }; M2SMF = derive2 { name="M2SMF"; version="2.0"; sha256="160qjrb3mxybvr4z6zra6rzf6scyrb9mplw36gqlfxj418ndnmm1"; depends=[dplyr MASS]; }; M2SMJF = derive2 { name="M2SMJF"; version="1.0"; sha256="0v4sg5h3h2pjp996jspv206c8cymjpn1fg38ivaw12s7bmx8j409"; depends=[dplyr MASS]; }; + M3 = derive2 { name="M3"; version="0.4"; sha256="18473ifcwvavic29nh9vnbrxfxfckydik3yl3hmv2djwkclx976q"; depends=[mapdata maps ncdf4 sf]; }; M3JF = derive2 { name="M3JF"; version="0.1.0"; sha256="0sz02cis8xh11fyng44j6al2fkz6ybcabdgg25bbwb3vidf1y197"; depends=[dplyr InterSIM MASS SNFtool]; }; MAAPER = derive2 { name="MAAPER"; version="1.1.1"; sha256="05jjfnp1hwg8pk06np6fbdfxi6zn60wzhrkzlh8jkqgwxjhgnvai"; depends=[GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges MASS Rsamtools]; }; MABOUST = derive2 { name="MABOUST"; version="1.0.1"; sha256="044k29nibl5zc32zz2696kbhrz5dafgaikgmjqznsq25p48si453"; depends=[Rcpp RcppArmadillo]; }; MACER = derive2 { name="MACER"; version="0.2.1"; sha256="02qqcaccw671773lp1zva340fd6wqbsx9v0yxy62cbjnyh3k260r"; depends=[ape ggplot2 httr pbapply png rentrez]; }; - MACP = derive2 { name="MACP"; version="0.1.0"; sha256="097qqqv0xmkm8cc5a2zr96lnnrkw92nzr3cj4sfnfa6whlpi72fn"; depends=[caret dplyr fmsb ggplot2 Hmisc igraph lsa pROC PRROC stringr tibble tidyr WGCNA zoo]; }; MADPop = derive2 { name="MADPop"; version="1.1.7"; sha256="0qmn6spp6vfn60h32s58yxngv8gmp1hpl8xni55v6ari0kczw90x"; depends=[BH Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; - MAGEE = derive2 { name="MAGEE"; version="1.3.2"; sha256="0k4dgbs686rchk26d1cvprf46axc1a6klxx1cajwrdcm1l9j7van"; depends=[CompQuadForm data_table foreach GMMAT MASS Matrix Rcpp RcppArmadillo]; }; + MAGEE = derive2 { name="MAGEE"; version="1.4.1"; sha256="0xkabvj222xrm62fvaaj0fhdybankz2a01rlxn84n0xvv4hlap7s"; depends=[CompQuadForm data_table foreach GMMAT MASS Matrix Rcpp RcppArmadillo]; }; MAGMA_R = derive2 { name="MAGMA.R"; version="1.0.1"; sha256="0i474az77w9nfmxhz2z76v483vsny1gkpzv3mb1zaqdcv26yqpzq"; depends=[doParallel dplyr flextable foreach ggplot2 janitor metafor overlapping psych purrr rlang robumeta tibble tidyselect tidyverse]; }; MAGNAMWAR = derive2 { name="MAGNAMWAR"; version="2.0.4"; sha256="1asr18byrgy6bkpxpmnkczgr3dam6ymf30lw6izq112krc891bg4"; depends=[ape coxme doParallel dplyr foreach iterators lme4 multcomp plyr qqman seqinr survival]; }; MAINT_Data = derive2 { name="MAINT.Data"; version="2.7.1"; sha256="0hjrz25jg4a6kcap01rjjgfvvmg1padd57wgjxihaxpsm7pb0fq9"; depends=[GGally ggplot2 MASS mclust miscTools pcaPP Rcpp RcppArmadillo robustbase rrcov sn withr]; }; @@ -2879,7 +2933,7 @@ in with self; { MALDIquant = derive2 { name="MALDIquant"; version="1.22.2"; sha256="1zygmn8cny5r4s0ni2kgqbg2xzjvjh9rzmqnw256jg0035qb0lb0"; depends=[]; }; MALDIquantForeign = derive2 { name="MALDIquantForeign"; version="0.14.1"; sha256="0504a755mccz174g5zcldblwbyg3y11hpxxwpj9bhw937h55zxng"; depends=[base64enc digest MALDIquant readBrukerFlexData readMzXmlData XML]; }; MALDIrppa = derive2 { name="MALDIrppa"; version="1.1.0-2"; sha256="1afwkc8dyq51z610z7wnhm95f5j04yj90pxxa33mhdnm2dwsc963"; depends=[lattice MALDIquant robustbase signal waveslim]; }; - MAMS = derive2 { name="MAMS"; version="2.0.1"; sha256="1mrdn9klqjpf74wvb5brm79jy260qb1n12rpqmqd38i5hrkpcqsx"; depends=[future future_apply mvtnorm]; }; + MAMS = derive2 { name="MAMS"; version="2.0.2"; sha256="16j24z18z7dc25sk4jfnqgglw8gvv6ddhvl6v8lswm3ib4l6chvb"; depends=[future future_apply knitr mvtnorm]; }; MANCIE = derive2 { name="MANCIE"; version="1.4"; sha256="0940xl3z5bca6hcnj2bj341l79wajilxlxzmyz3dlgrz0b3bbdmm"; depends=[]; }; MANOVA_RM = derive2 { name="MANOVA.RM"; version="0.5.4"; sha256="03y6qzbh696h282pq8as2zy16y7j95d04qvn3labivd5qygfwfhp"; depends=[data_table ellipse magic MASS Matrix multcomp plotrix plyr]; }; MAP = derive2 { name="MAP"; version="0.1.3"; sha256="19d0m30jh50ibbdgvcvq1vsz5i1vf8qvl0d0nbqklvnndch61jhk"; depends=[flexmix Matrix]; }; @@ -2891,10 +2945,10 @@ in with self; { MARSS = derive2 { name="MARSS"; version="3.11.9"; sha256="0iipvlf6franhvbpg5c7wdnyzl9wl27xhnl1k66mi9m8ihjcczrm"; depends=[generics KFAS mvtnorm nlme]; }; MARSSVRhybrid = derive2 { name="MARSSVRhybrid"; version="0.1.0"; sha256="10b8d75q5hiqf8id1qsvjx379xyx4vphq5r1iwvykjaw4zxbyx65"; depends=[e1071 earth]; }; MARVEL = derive2 { name="MARVEL"; version="1.4.0"; sha256="1zsgj3dbqpfjv2x6xpp75n9jxf04svqffiy9gxlbxkns3clwqz5i"; depends=[ggplot2 Matrix plyr scales]; }; - MASS = derive2 { name="MASS"; version="7.3-60.0.1"; sha256="1gdd2gyqngvgnm0bxc3a33nykrx2rbfmxj82i7bh7f1961cr7pvl"; depends=[]; }; + MASS = derive2 { name="MASS"; version="7.3-61"; sha256="140ah1719zad8gd0glvy9qlkxxakgz12i5r5gk2bgmwxayzwhi1i"; depends=[]; }; MASSExtra = derive2 { name="MASSExtra"; version="1.2.2"; sha256="0agr8kf7hh7mjpa98y486bql9wxjwif9f03wz468srzz8jjin39h"; depends=[demoKde MASS]; }; MASSTIMATE = derive2 { name="MASSTIMATE"; version="2.0-1"; sha256="1dvidwjw4zgflms5njbd9n85g1gbgfg6hk0fb63q5n65iyxxfmyh"; depends=[]; }; - MAT = derive2 { name="MAT"; version="2.3.1"; sha256="0jr08j96agqw4hzdbk9ixdpngh60bd7w47192d0zm3byymcxpb0y"; depends=[Rcpp RcppArmadillo]; }; + MAT = derive2 { name="MAT"; version="2.3.2"; sha256="0zihjan1kg3h4fkg51m9pfnl9763024q0r83r1yk83ckb78v2s88"; depends=[Rcpp RcppArmadillo]; }; MATA = derive2 { name="MATA"; version="0.7.1"; sha256="0qydfp856qlmiwf3a2vs2dfk203sx8vvzrqn4hga9wi7bxdylk9f"; depends=[]; }; MAVE = derive2 { name="MAVE"; version="1.3.11"; sha256="01n204bxabbm8pcpayy2s0jvhg73r5cv0026lb3vbk0m40z02kcz"; depends=[mda Rcpp RcppArmadillo]; }; MAZE = derive2 { name="MAZE"; version="0.0.2"; sha256="01vxglgfn82m8avsq6s144gmwclw08arzfrb8lwlcynr62ifzaim"; depends=[doParallel flexmix foreach MASS numDeriv pracma Rcpp]; }; @@ -2903,11 +2957,13 @@ in with self; { MB = derive2 { name="MB"; version="0.1.1"; sha256="15ynrx2w5h5m18ws63syp29n8qc9dfk8q0riidskynijz3p7wz7w"; depends=[tibble]; }; MBA = derive2 { name="MBA"; version="0.1-0"; sha256="1bw3a8xcbjmhb3mfzblx8kpj3jiag8c95wm5g6xy52xrql2rj0vq"; depends=[BH]; }; MBAnalysis = derive2 { name="MBAnalysis"; version="2.0.2"; sha256="1b1s7s1qa82y8054f3mdpq7s13lk7dks900li5k0gr7sqfqdg1fz"; depends=[ggplot2 ggrepel]; }; + MBBEFDLite = derive2 { name="MBBEFDLite"; version="0.0.2"; sha256="0bq7h2jfnqiylmy9ji5k4r3v76qbxpd5wdjck18fs4vjfxapwplp"; depends=[]; }; MBC = derive2 { name="MBC"; version="0.10-6"; sha256="1680lnzga21qk5yddrciiaifxkkb9kk744m9fbj0hg5xw6v9dxic"; depends=[energy FNN Matrix]; }; + MBCbook = derive2 { name="MBCbook"; version="0.1.2"; sha256="0av7mswr1l02jkjpmh780phjgwjazqzyl07hkb282ba2h95dwlwx"; depends=[MASS mclust mvtnorm Rmixmod]; }; MBESS = derive2 { name="MBESS"; version="4.9.3"; sha256="05ph8dwigwn0c4qg8smqhsjijvsvfawbzvm74mqpasi8qifz8nd3"; depends=[boot lavaan MASS mnormt nlme OpenMx sem semTools]; }; MBHdesign = derive2 { name="MBHdesign"; version="2.3.15"; sha256="03v6809drwjwr9xk19pr4n5wnqy5kh3vizfk0mlml3sn40fg3kxj"; depends=[class geometry mgcv mvtnorm randtoolbox terra]; }; MBMethPred = derive2 { name="MBMethPred"; version="0.1.4.2"; sha256="0qpflcydkf2k8a7kqklvp7mskppviqkffkr98rfsklk8iqf8x9c9"; depends=[caret caTools class dplyr e1071 ggplot2 keras MASS pROC randomForest readr reshape2 reticulate rgl Rtsne SNFtool stringr tensorflow xgboost]; }; - MBNMAdose = derive2 { name="MBNMAdose"; version="0.4.2"; sha256="1iar3xqj8458nh0lb2nc566zsdglvrvbxb6xz7yd1nny5aqdxdm3"; depends=[checkmate dplyr igraph magrittr R2jags Rdpack reshape2 rjags scales]; }; + MBNMAdose = derive2 { name="MBNMAdose"; version="0.4.3"; sha256="1dqh7z6wpnryl9djfsacbdm4b4my08kh4l63vd31xs742sywv6i0"; depends=[checkmate dplyr igraph magrittr R2jags Rdpack reshape2 rjags scales]; }; MBNMAtime = derive2 { name="MBNMAtime"; version="0.2.4"; sha256="1ny438dy62zrafyf7nng2hq5v311l1zc5xd39452fgq6ij0rnrni"; depends=[checkmate dplyr gridExtra knitr magrittr R2jags Rdpack reshape2 rjags]; }; MBSGS = derive2 { name="MBSGS"; version="1.1.0"; sha256="1h5vhmpgrqza12j7ivhwgd5wyb7kkb8mjbxl5w756vyid8g03flz"; depends=[MASS MCMCpack mgcv mnormt truncnorm]; }; MBSP = derive2 { name="MBSP"; version="4.0"; sha256="1rfjykm2363m67ycm9vsxnddcsmlqxg5gx8sfg9ma8alwnh0s3fb"; depends=[GIGrvg MCMCpack mvtnorm]; }; @@ -2915,6 +2971,7 @@ in with self; { MCARtest = derive2 { name="MCARtest"; version="1.2.1"; sha256="0vcw8ysxkv2ajiv44cf6pf8dgn6bmjzs01fsdijs29ky9467alw5"; depends=[copula Epi gtools highs lpSolve MASS Matrix missMethods misty norm pracma rcdd Rcpp Rcsdp Rdpack]; }; MCAvariants = derive2 { name="MCAvariants"; version="2.6.1"; sha256="0hsm60z1xkjda74f1ab3m5d2l9rv5r88ms7fi0bndrys6dd9fzgl"; depends=[ggplot2 ggrepel gridExtra plotly]; }; MCBackscattering = derive2 { name="MCBackscattering"; version="0.1.1"; sha256="0vvcqjrh8psl480s4q2830rzm2bwy9mmvk9kipp72lzln51qnha6"; depends=[]; }; + MCCM = derive2 { name="MCCM"; version="0.1.0"; sha256="1iyd81smamxxy97gzb7jzxkys94ql9nchik3aszkd91zicixd12k"; depends=[lavaan MASS mvtnorm polycor]; }; MCDA = derive2 { name="MCDA"; version="0.1.0"; sha256="060mqk1cyxh2v68dr8533zr4k3wkz2f4k22400xgj40rwgj9a355"; depends=[combinat ggplot2 glpkAPI plyr RColorBrewer Rglpk triangle]; }; MCI = derive2 { name="MCI"; version="1.3.3"; sha256="1wn8lcr5sq3697nsmly6syb9jv7p99ks0fy933ff5rx54x3rf9hz"; depends=[]; }; MCID = derive2 { name="MCID"; version="0.1.0"; sha256="034r4qxbqnl9hhkpv9r79p26lzj5qh0379ya43ynyvbbi8b8z3rl"; depends=[]; }; @@ -2923,7 +2980,7 @@ in with self; { MCMC_OTU = derive2 { name="MCMC.OTU"; version="1.0.10"; sha256="1h1b0lw7d96q47sgq3px8j6rbkyhxhykm1c891px89khgg6hnszc"; depends=[coda ggplot2 MCMCglmm]; }; MCMC_qpcr = derive2 { name="MCMC.qpcr"; version="1.2.4"; sha256="0v0d43wnq3swbrcsbg9qmwkmk4s50grd6cik4ng5baj2i6i4hd2n"; depends=[coda ggplot2 MCMCglmm]; }; MCMC4Extremes = derive2 { name="MCMC4Extremes"; version="1.1"; sha256="06p6xdbja7vrdq4vnhybpkmyf4rkaihcmy9sc81sb0h2wa21vcq0"; depends=[evir]; }; - MCMCglmm = derive2 { name="MCMCglmm"; version="2.35"; sha256="19krh6b817psz2fgaxny7acm5ka7yzpka8ildvjby0l7lxsg046c"; depends=[ape coda corpcor cubature Matrix tensorA]; }; + MCMCglmm = derive2 { name="MCMCglmm"; version="2.36"; sha256="1wca9x5c9x88cryj1pkhl73chmnbc1653j08faz7lp03z2mdkzv6"; depends=[ape coda corpcor cubature Matrix tensorA]; }; MCMCpack = derive2 { name="MCMCpack"; version="1.7-0"; sha256="1vsx0hs8v0928lhkf2jhwc2cwq7bdb5iciibkbfc2zh123bp6q44"; depends=[coda lattice MASS mcmc quantreg]; }; MCMCprecision = derive2 { name="MCMCprecision"; version="0.4.0"; sha256="0r0qchiv61sk3drrb0rhwsk55gci4w343hd2gsvclrlyb8r9qhaf"; depends=[combinat Matrix Rcpp RcppArmadillo RcppEigen RcppProgress]; }; MCMCtreeR = derive2 { name="MCMCtreeR"; version="1.1"; sha256="00r6f62h7ryil7qxd25icvkqypjjssjsrz4i5sbqsnw5cdy5al8z"; depends=[ape coda sn]; }; @@ -2942,6 +2999,7 @@ in with self; { MDBED = derive2 { name="MDBED"; version="1.0.0"; sha256="1r3sizb2mqd4pqjy25krwmsjfkr6cl7lkd8db5jn3hgxx3qh6sgc"; depends=[doParallel foreach ggplot2 lattice orthopolynom psych Rdpack]; }; MDEI = derive2 { name="MDEI"; version="1.0"; sha256="1bj9cp73lyj2dzcycf5a196a3d8swblhxs4qwsyc7vmy4pwpxq43"; depends=[MASS ranger Rcpp RcppArmadillo splines2]; }; MDFS = derive2 { name="MDFS"; version="1.5.3"; sha256="0gazmcgkgz915s3ljjdksm0bw4z6f4fz9qfzibdq6wscwcg9kfjn"; depends=[]; }; + MDMA = derive2 { name="MDMA"; version="1.1.0"; sha256="0lfn44p18jm6q1ci7m9r79jhfdd3x07489b7nadksn59xsianvaw"; depends=[car MASS]; }; MDMAPR = derive2 { name="MDMAPR"; version="0.2.3"; sha256="0w2n6qrjvyzf2wc1yw8a8k027g3y3w2k0z6wkwnj1p8q5zg24c66"; depends=[berryFunctions bslib DBI dplyr DT ggplot2 htmltools htmlwidgets leaflet leaflet_extras plotly reactable readxl RMySQL shiny shinydashboard shinyjs shinyWidgets writexl xfun]; }; MDMR = derive2 { name="MDMR"; version="0.5.1"; sha256="1pv57xl7pjsqxz1j8mnfmjaa36mlr749yb4c44ppdrx6khvw662x"; depends=[car CompQuadForm lme4]; }; MDOLS = derive2 { name="MDOLS"; version="1.0"; sha256="02fkrv6yn2r0ryphvxhlnv05xxq3j824ijnj75dag3v9kinx1ar2"; depends=[]; }; @@ -2953,18 +3011,19 @@ in with self; { MDplot = derive2 { name="MDplot"; version="1.0.1"; sha256="1xijh18hrkb807nfkdr7g642aspn5psc8nw29q387jl5hly2w8s9"; depends=[gplots gtools MASS RColorBrewer]; }; MED = derive2 { name="MED"; version="0.1.0"; sha256="0fy0qmxirkdz5kigy2r7l5czjzws0fhjxy13kv1kqh628ldrp109"; depends=[]; }; MEDseq = derive2 { name="MEDseq"; version="1.4.1"; sha256="1w4jgy3fxwmk87r8kc4a6rx20salsk06qxxgx2jd3d22rvrj8crd"; depends=[cluster matrixStats nnet seriation stringdist TraMineR WeightedCluster]; }; + MEFM = derive2 { name="MEFM"; version="0.1.1"; sha256="0gp2z9wwvpwm44lan13fr7j73zkn31clphkizwj8r40yynnavygy"; depends=[tensorMiss]; }; MEGENA = derive2 { name="MEGENA"; version="1.3.7"; sha256="0cr10pmj1n831scz5kgaq3nkglr3imwgc62cxng2dvdxr9991g21"; depends=[BH cluster doParallel foreach fpc ggplot2 ggraph ggrepel igraph Matrix Rcpp reshape]; }; MEMSS = derive2 { name="MEMSS"; version="0.9-3"; sha256="0fq85jrajfwavq2fvsw2x9hknc57wc253zw2vw970f04khfbragd"; depends=[lme4]; }; MEPDF = derive2 { name="MEPDF"; version="3.0"; sha256="15hbp7g5dsdpvi239jm6jn11fn371ir6la31g0flqkilq6sr1sqd"; depends=[gtools mvtnorm plyr pracma]; }; MERO = derive2 { name="MERO"; version="0.1.2"; sha256="10wz6qrmi612y6whrn3dka606llijp5d1fffh00b1pprx2rcfl8w"; depends=[doParallel foreach ggpubr missForest progress]; }; MESS = derive2 { name="MESS"; version="0.5.12"; sha256="1xyw04glhpgdcc3p96yvm346l62lsq37ml6lv59ap2ksws9pkq21"; depends=[clipr geeM geepack ggformula ggplot2 glmnet kinship2 MASS Matrix mvtnorm Rcpp RcppArmadillo]; }; MEclustnet = derive2 { name="MEclustnet"; version="1.2.2"; sha256="0rs58dafxngk2lkq14cy14ayjwgnz1gmi12jmi4z74sdj0b3h0gw"; depends=[e1071 ellipse latentnet MASS mvtnorm nnet vegan]; }; - MF_beta4 = derive2 { name="MF.beta4"; version="1.0.1"; sha256="0l3qafpavjshfayvz603141ch9s9a4pl3ly1llfkrmm3rmspb261"; depends=[broom devtools dplyr ggplot2 ggpubr lme4 lmerTest patchwork purrr tidyr tidyverse]; }; + MF_beta4 = derive2 { name="MF.beta4"; version="1.0.3"; sha256="13k9jqspg42hgis0svad76yvzb8bh5cm4qynkpn0ga0an2lww6gs"; depends=[broom devtools dplyr ggplot2 ggpubr lme4 lmerTest patchwork purrr tidyr tidyverse]; }; MFAg = derive2 { name="MFAg"; version="1.9"; sha256="008krza4lhbv641sn0wlf9gl66n8x6c9d8404m76dsgdsr118c1a"; depends=[]; }; MFDFA = derive2 { name="MFDFA"; version="1.1"; sha256="0nr78p6y4jpg1hrl0h7b7hyvwbr61paf85y3f2dx815x5hscmdhy"; depends=[numbers]; }; MFO = derive2 { name="MFO"; version="0.1.0"; sha256="0i8zkdwmngdq21f1rmn1fmgsr525xfzyjd7nxwy8p7fns6hsq31r"; depends=[dplyr ggplot2 magrittr minpack_lm openxlsx readxl stringr tibble tidyr]; }; MFPCA = derive2 { name="MFPCA"; version="1.3-10"; sha256="0qpmy9cxskz4ii3qa5kvrdka4gbvlnch2blis6jjr4vic86a5mgi"; depends=[abind foreach funData irlba Matrix mgcv plyr]; }; - MFSIS = derive2 { name="MFSIS"; version="0.2.0"; sha256="0cr7ygnx2jqk0zvpfmqww38qkkrlrzkp5gkqmg4s1k6j0vjkm3lf"; depends=[Ball cli crayon doParallel dr foreach fs MASS reticulate survival]; }; + MFSIS = derive2 { name="MFSIS"; version="0.2.1"; sha256="02bwnsyy5jrjmh50rd2cql8k9djkw6r0vi9rakfp86n853ir73fj"; depends=[Ball cli crayon doParallel dr foreach MASS reticulate survival]; }; MFT = derive2 { name="MFT"; version="2.0"; sha256="0n1xws3dw0650037qyqgp600p8cf098qa5hkbncdfdbl0w34qamy"; depends=[]; }; MG1StationaryProbability = derive2 { name="MG1StationaryProbability"; version="0.1.2"; sha256="151ygjpykc9jccfh6jhgywg82j006a8yqba6nvzhd1v9qb60yd4a"; depends=[doParallel foreach memoise]; }; MGBT = derive2 { name="MGBT"; version="1.0.7"; sha256="0wrw5yjaw3sgsw0l8q5gq95i5q1wxwgcffkxkxaa1cygblrrz12y"; depends=[]; }; @@ -2984,11 +3043,11 @@ in with self; { MHTrajectoryR = derive2 { name="MHTrajectoryR"; version="1.0.1"; sha256="13idcjx7pjpwvr4c52938yqhhaj1gprb8hjhaim3jx4062wf9pla"; depends=[mgcv]; }; MIAmaxent = derive2 { name="MIAmaxent"; version="1.2.0"; sha256="0r4q1735f7apfj0jz4f52ra7sisbkkkk2n6i0kii3q64sx2h3xbj"; depends=[dplyr e1071 raster rlang]; }; MICsplines = derive2 { name="MICsplines"; version="1.0"; sha256="1ig3329akcaq6lk17nnid64qgz1i8spy11f1gawnbmp2x6z6y8wc"; depends=[]; }; - MIDASwrappeR = derive2 { name="MIDASwrappeR"; version="0.5.1"; sha256="07108dg16i20fg6cvsnbflfz65smwk08vjmf1b193zyvhdikwhfm"; depends=[Rcpp]; }; MIDN = derive2 { name="MIDN"; version="1.0"; sha256="08i9zfmaywi5imp36ahjpirlkl55k01x543nz95i089w3sfrsz0g"; depends=[BiasedUrn]; }; MIIPW = derive2 { name="MIIPW"; version="0.1.1"; sha256="043zdadny5rb1vlg1lnjaxjdjqmb755lgxha4zcdzyv9sl83ca8y"; depends=[MASS Matrix mice]; }; MIIVefa = derive2 { name="MIIVefa"; version="0.1.2"; sha256="1727xhnc1hxphid54nzzd2iaz1x3ivphidxkb47r3ck0njd43rwk"; depends=[MIIVsem]; }; MIIVsem = derive2 { name="MIIVsem"; version="0.5.8"; sha256="1qb1xrxhgj6b0l24spbp80f0rm8v41bqsdachqjhsacq2lgga259"; depends=[boot car lavaan Matrix numDeriv]; }; + MIMER = derive2 { name="MIMER"; version="1.0.3"; sha256="1nqdjgm95dnaxnzy5j28agl7b95hj6hqjyipk5mz44yc2y2chg3z"; depends=[AMR data_table dplyr fuzzyjoin reshape2 rlang stringr testthat tidyr]; }; MIMSunit = derive2 { name="MIMSunit"; version="0.11.2"; sha256="1i0sadm4gh8yynnihhyp0lm37dq7qm7dmkl28jzdb5knls8nhcpz"; depends=[caTools dplyr dygraphs ggplot2 lubridate magrittr plyr R_utils RColorBrewer readr shiny signal stringr tibble xts]; }; MINTplates = derive2 { name="MINTplates"; version="1.0.1"; sha256="1jj51314p2ni3f3ncpd8gp7pgshhsp97ic123d732sc9xr0h5rnr"; depends=[]; }; MIRES = derive2 { name="MIRES"; version="0.1.0"; sha256="17k6f73qx85klhhn247nr6h7sinpabq9crlc5ag7qm6z7k6mr370"; depends=[BH cubature dirichletprocess Formula HDInterval logspline mvtnorm nlme pracma Rcpp RcppEigen rstan rstantools StanHeaders truncnorm]; }; @@ -2999,14 +3058,15 @@ in with self; { MKclass = derive2 { name="MKclass"; version="0.5"; sha256="1f6k00552vs3fql35mxrpqq52a8jw5g253k5a81shc11j9qapg9x"; depends=[]; }; MKdescr = derive2 { name="MKdescr"; version="0.8"; sha256="0y4mg3lg94nvyvj8rns5lffd6qjw1yn6yw8kn03n94rig857amwp"; depends=[ggplot2 scales]; }; MKendall = derive2 { name="MKendall"; version="1.5-4"; sha256="15ldzsz99i30x05bi73j3wny1xl0gzdxz3jqjq7dfygdb2gyz1jy"; depends=[]; }; - MKinfer = derive2 { name="MKinfer"; version="1.1"; sha256="0wlvlh31qwxsk00zszbzrdhk7gx226i7cyhv35h9wnawmyrxkb5g"; depends=[arrangements boot exactRankTests ggplot2 miceadds MKdescr nlme]; }; + MKinfer = derive2 { name="MKinfer"; version="1.2"; sha256="10fy49b5bprbc30zrgz1y74pp480x3avrk9pig6mj9gg6fci207p"; depends=[arrangements boot exactRankTests ggplot2 miceadds MKdescr nlme]; }; MKmisc = derive2 { name="MKmisc"; version="1.9"; sha256="09kdwsfx5w3q88jbnxbaxzbzyx9fhhphqqaxn5qghhh1z2vpmy93"; depends=[ggplot2 limma RColorBrewer robustbase scales]; }; MKomics = derive2 { name="MKomics"; version="0.7"; sha256="0ck8i7ip12bb6wilmwhdrbdmf56ymm3rp6973lr1p4bc2m2kvhif"; depends=[circlize ComplexHeatmap limma RColorBrewer robustbase]; }; - MKpower = derive2 { name="MKpower"; version="0.8"; sha256="0mw2z2jglq64bbwkjbwyxxdljr2n2drrrjjxp2jydvl3zqzaq553"; depends=[coin ggplot2 matrixTests MKdescr MKinfer qqplotr]; }; + MKpower = derive2 { name="MKpower"; version="0.9"; sha256="1q04cs2qrjivyiig8nz3s8fl9b4g0smj390vb8jy67p9rq4nhjjz"; depends=[coin ggplot2 matrixTests MKdescr MKinfer mvtnorm qqplotr]; }; ML_MSBD = derive2 { name="ML.MSBD"; version="1.2.1"; sha256="1cpwq0vilbyz837d8k8pjipw3cwdsggbs88nwp827s4w2f1m7pap"; depends=[ape foreach]; }; ML2Pvae = derive2 { name="ML2Pvae"; version="1.0.0.1"; sha256="089cl5mcf06zxs26grk0aqmd0xy9x6svfkfa7dw0m8zqc0s0mkix"; depends=[keras reticulate tensorflow tfprobability]; }; MLCIRTwithin = derive2 { name="MLCIRTwithin"; version="2.1.1"; sha256="1x0xmka7kkbjnh3yv4zxxyl17cpmf0rb9hxmdl1srb6ijld4np1b"; depends=[limSolve MASS MultiLCIRT]; }; MLCM = derive2 { name="MLCM"; version="0.4.3"; sha256="1sz5c3wxvnyxd3bf53i8x2jw591phx2np6c6bj4cqppb98ab83f3"; depends=[]; }; + MLCOPULA = derive2 { name="MLCOPULA"; version="1.0.0"; sha256="1addgypksr3hrhzrj9ypaa2w7vgscrqlrfkgx7n0rc7drm827wix"; depends=[copula GRIDCOPULA igraph kde1d pracma TSP]; }; MLDS = derive2 { name="MLDS"; version="0.5.1"; sha256="0c8bmdjn6980lqihzc0rgg864hs1a51n2lrwi1vrxdp4xylvnqdd"; depends=[MASS]; }; MLDataR = derive2 { name="MLDataR"; version="1.0.1"; sha256="0sbm79hpgxiqnqjyr5n88rhs29lkp17czz9jmhd2d5x97ncpqw9f"; depends=[caret ConfusionTableR dplyr ggplot2 OddsPlotty parsnip ranger recipes rsample varhandle workflows]; }; MLEce = derive2 { name="MLEce"; version="2.1.0"; sha256="190i2if8hgwqlznhls780vpkwprfmnsr9jm6zdsa8av0gh6kldzh"; depends=[ggplot2 LaplacesDemon mvtnorm nleqslv reshape sirt]; }; @@ -3023,9 +3083,9 @@ in with self; { MLVSBM = derive2 { name="MLVSBM"; version="0.2.4"; sha256="1jsaas7crdc3df790c279a5qr8iw63whmkijs86s1y6gyz4qk9vf"; depends=[ape blockmodels cluster magrittr R6]; }; MLZ = derive2 { name="MLZ"; version="0.1.4"; sha256="0kvwv13gklilpmqrc939lm1npyvmg8hrxy8m8vfpvrc5jgli49mx"; depends=[dplyr ggplot2 gplots RcppEigen reshape2 TMB]; }; MLeval = derive2 { name="MLeval"; version="0.3"; sha256="1g2w5lrr7199n4zyaalbp9xdgl858hdg1pqr3rpd7v5fmamawc69"; depends=[ggplot2]; }; - MLmetrics = derive2 { name="MLmetrics"; version="1.1.1"; sha256="061129b36h7xqw4zsznik694n8yy9qq6aaqfhdxkhdv8n5v1nzvp"; depends=[ROCR]; }; + MLmetrics = derive2 { name="MLmetrics"; version="1.1.3"; sha256="11dgpw6lzs3vrfa3v9kf8x2rph3vpicxbw5af89afa175by3amrc"; depends=[ROCR]; }; MLpreemption = derive2 { name="MLpreemption"; version="1.0.1"; sha256="0fvrl7ahaiv93sq637yhf18j8bf3w28f0l4b8sjs2ssc5pbg1448"; depends=[]; }; - MM = derive2 { name="MM"; version="1.6-7"; sha256="137v9728h5kxhvyrpvfawv25l9jzy7qi74pr4k91v286l0x7ksi6"; depends=[abind emulator magic mathjaxr Oarray partitions]; }; + MM = derive2 { name="MM"; version="1.6-8"; sha256="04fr8vxjc7kgpxrlk7q5ibad00ff8fafl14l36snhbszv0zv4n8k"; depends=[abind magic mathjaxr Oarray partitions quadform]; }; MM2Sdata = derive2 { name="MM2Sdata"; version="1.0.3"; sha256="0hlm6jp8jq38vkszwdgpf30w11l1fhpblg26zv05j50a6whpmhqd"; depends=[Biobase]; }; MM4LMM = derive2 { name="MM4LMM"; version="3.0.2"; sha256="02a553pncv7q0zczy6rvj4avjpryv01n2mhr9cr0ir7607k1jllx"; depends=[corpcor dplyr MASS Matrix purrr Rcpp RcppEigen]; }; MMAC = derive2 { name="MMAC"; version="0.1.2"; sha256="1xwz48iizf0lvmhc7krsraabc49ky85qvgr23w4ip6jzfv4sn1jr"; depends=[]; }; @@ -3041,6 +3101,7 @@ in with self; { MMVBVS = derive2 { name="MMVBVS"; version="0.8.0"; sha256="08nkhrf62yywpm0nw22pqzlcm72sf4zq44640a7pf57bbzm38ccy"; depends=[ggplot2 Rcpp RcppArmadillo reshape reshape2 rlang]; }; MMWRweek = derive2 { name="MMWRweek"; version="0.1.3"; sha256="1l1ks44v52iggw9nhs56lfj6804yab5b17k8fzrc6h1kvj3vda0s"; depends=[]; }; MMeM = derive2 { name="MMeM"; version="0.1.1"; sha256="1cig085h2jvrpb904wglwvhvds3sn58wpbl081wcwvzipfa8y37s"; depends=[jointDiag lme4 MASS Matrix matrixcalc psych stringr]; }; + MN = derive2 { name="MN"; version="1.0"; sha256="1cq1yi5y014hfiz9k1l0pif4n1bs0zf8nzynichv6l9r8mr63j2b"; depends=[Rfast]; }; MNARclust = derive2 { name="MNARclust"; version="1.1.0"; sha256="0r4d066nd5xzry3zn463zqzy3x45pqhix7jlg9ib3sjdfrqqimnn"; depends=[Rcpp RcppArmadillo rmutil sn]; }; MNB = derive2 { name="MNB"; version="1.1.0"; sha256="01rq6bczqdbqj7w7aacvwb4zvfzy53pkxfawx5faxk60iwba8bj1"; depends=[flexsurv numDeriv]; }; MNLR = derive2 { name="MNLR"; version="0.1.0"; sha256="0q80232ndp7pkklzqdbga1vf51dmsxaivm4ia4wah32rc2c87fqp"; depends=[caret e1071 nnet rmarkdown shiny]; }; @@ -3060,11 +3121,10 @@ in with self; { MOTE = derive2 { name="MOTE"; version="1.0.2"; sha256="17y2l2rmw7fhvknyh5z09i7hd8nhamx12g00rcymp75gqkz9lzc7"; depends=[ez MBESS reshape]; }; MPBoost = derive2 { name="MPBoost"; version="0.1-6"; sha256="0fi8hx271893dak7whlcxyafqslnqj9kih3jk801s8lwg8g5zvp1"; depends=[BH Rcpp]; }; MPCI = derive2 { name="MPCI"; version="1.0.7"; sha256="1l55q09lliv0y4q1hc0jgzls47wkmsfag6b4iq5y6wrllr5wq7sa"; depends=[]; }; - MPCR = derive2 { name="MPCR"; version="1.1"; sha256="0a4iha2xl6iywf8ad1kiy1xwg6fkd62yjqvdkzf0nkklql2g5fvg"; depends=[Rcpp]; }; + MPCR = derive2 { name="MPCR"; version="1.1.2"; sha256="0hq6df8rz7hi1s4kpcxlx21kppn70fjki8wfy6gi8kna8bmayyf7"; depends=[Rcpp]; }; MPDiR = derive2 { name="MPDiR"; version="0.2"; sha256="0n7zrcxqfvd0y4qiqsx0qf5rgqdrci5026wkdpffngamxlm80f86"; depends=[]; }; MPGE = derive2 { name="MPGE"; version="1.0.0"; sha256="10lzkk8fhpxd1z4yp051q3k36fsvddrwssv7nn03r2bkp6q8rpzb"; depends=[car purrr]; }; MPI = derive2 { name="MPI"; version="0.1.0"; sha256="081yhbk3qz5935yz5n1391x3hpj8m0cbj1p81snhb9n8h0agwgv0"; depends=[doParallel dplyr foreach purrr tidyr]; }; - MPLikelihoodWB = derive2 { name="MPLikelihoodWB"; version="1.1"; sha256="0xgj349jkv29ldia4lmsiwnkhrk99aqcrvyiy3si5knmi1jvx9q0"; depends=[MASS survival]; }; MPN = derive2 { name="MPN"; version="0.3.0"; sha256="0rrigkq5bkarncswv8kgvvwd1vrq5cqnb5vypa9d39q2ksqf8j3d"; depends=[]; }; MPS = derive2 { name="MPS"; version="2.3.1"; sha256="08yzynznf33y7y3pf7fayks5hi3cdvzwzn8axg7aky5kvi2bfv22"; depends=[]; }; MPSEM = derive2 { name="MPSEM"; version="0.4-1"; sha256="0cq7vyyif7gxywrj420msscjf1aq427g88x8yvxf3a5a6mqapkr8"; depends=[ape MASS]; }; @@ -3087,7 +3147,7 @@ in with self; { MRTAnalysis = derive2 { name="MRTAnalysis"; version="0.1.2"; sha256="19s30k2crlnracwld0c1dhkvnwfyb32bhr06w7mbxm748lwhkwdh"; depends=[geepack rootSolve sandwich]; }; MRTSampleSize = derive2 { name="MRTSampleSize"; version="0.3.0"; sha256="03c6jkanff241rcv1yixvmlnya3sd8hqpawf9dx9mpsri4pp6mdk"; depends=[]; }; MRTSampleSizeBinary = derive2 { name="MRTSampleSizeBinary"; version="0.1.2"; sha256="1kb88sdhb8pp4mmvz8fy08drslzxj58fh1ycqaa3da6j7s9x65bn"; depends=[ggplot2 Matrix]; }; - MRZero = derive2 { name="MRZero"; version="0.1.0"; sha256="1ksmhpycslkilm1ixhdi0asa5la5mrql48ycbf1camk556mcl3wa"; depends=[ggplot2 glmnet knitr plotly quantreg rmarkdown robustbase]; }; + MRZero = derive2 { name="MRZero"; version="0.2.0"; sha256="0bjxy7rcgcsy2d0kg5v230l5z0hd72jq3z7692km9sbhh3bq51bf"; depends=[ggplot2 glmnet knitr plotly quantreg rmarkdown robustbase]; }; MRmediation = derive2 { name="MRmediation"; version="1.0.1"; sha256="0v0kn6x4fwj35imj1fb2f2024ifb7081z4cwlhjmdxhabcy6xbx7"; depends=[fda MASS]; }; MSBStatsData = derive2 { name="MSBStatsData"; version="0.0.2"; sha256="06k7fy327d0jrzjcc35lwzl0iax40wm2sfrqwpgw0rh88yaxjzvv"; depends=[tibble]; }; MSCMT = derive2 { name="MSCMT"; version="1.4.0"; sha256="1mjm85pxxww6m7mfk8xfwhx65c64k4v6pjpvbasv5jhy49kfjgw4"; depends=[ggplot2 lpSolve lpSolveAPI Rdpack Rglpk]; }; @@ -3100,17 +3160,17 @@ in with self; { MSML = derive2 { name="MSML"; version="1.0.0.1"; sha256="0nzn3zys6cbqvzjncdgvlxw00zvg7c2wcnf59yky66chz42c31wd"; depends=[r2redux R2ROC]; }; MSMwRA = derive2 { name="MSMwRA"; version="1.5"; sha256="062d37h47p3sx65k5jh8n900dfzm1mvi18ikral3ajdhy7x2cif9"; depends=[]; }; MSPRT = derive2 { name="MSPRT"; version="3.0"; sha256="0fvikvnf3fa4ski9idg8llxx33bgkrfj5sgkjn0d1dz30kgcx2w2"; depends=[doParallel foreach ggplot2 ggpubr iterators nleqslv]; }; - MSQC = derive2 { name="MSQC"; version="1.1.0"; sha256="1irs750n38513si9gw2fs9xibmlw0g3yd9w3rfcj7gbbgp2l6p4f"; depends=[rgl]; }; MSRDT = derive2 { name="MSRDT"; version="0.1.0"; sha256="1i35zsip6p177k9pnbmvkjdc1hpr6nclhbx2sfah95ls5v6xnzz8"; depends=[dplyr gtools reshape2]; }; MSSQL = derive2 { name="MSSQL"; version="1.0.0"; sha256="15glgn2dr1yygxps0mx68435zqc2hi4hvgr4rvgrwyxdnlm5g35y"; depends=[RODBC]; }; MST = derive2 { name="MST"; version="2.2"; sha256="0p833nyq9p0r0hy02f4sy6gv1wm9flj3dxkv73ihy8503r89bbzz"; depends=[Formula MASS partykit survival]; }; + MSTest = derive2 { name="MSTest"; version="0.1.2"; sha256="0ad28aj9pmy9vn6z9fhzvap4cbxafbk09amhgp178hvw9rdp48zf"; depends=[foreach GA GenSA nloptr numDeriv pracma pso Rcpp RcppArmadillo rlang]; }; MSbox = derive2 { name="MSbox"; version="1.4.8"; sha256="1cppzy3kri2zmhyk34scffix28v1bjb0fhk51kb33amg6vz5mnj3"; depends=[crayon stringr xml2]; }; MSclassifR = derive2 { name="MSclassifR"; version="0.3.3"; sha256="1qn79awr6yiywiz9k1wx6bqml1ssjijg1k2rm4blvlbd26yk5lbr"; depends=[car caret cp4p dplyr e1071 fuzzyjoin ggplot2 glmnet limma MALDIquant MALDIquantForeign MALDIrppa mclust metap mixOmics mltools nnet performanceEstimation randomForest reshape2 statmod UBL vita VSURF xgboost]; }; - MSclust = derive2 { name="MSclust"; version="1.0.3"; sha256="0kb649sg0q7j4my7xx860pxmh6hd1f8h6sxyh49bwv9glvzq4p75"; depends=[cluster GGally ggplot2 gtools Matrix mclust mnormt mvtnorm psych]; }; + MSclust = derive2 { name="MSclust"; version="1.0.4"; sha256="1ra9y9njcz21s2p63gisi3vgjjqzdnn9vvp0qfszkvpm0kkl0487"; depends=[cluster GGally ggplot2 gtools Matrix mclust mnormt mvtnorm psych]; }; MScombine = derive2 { name="MScombine"; version="1.4"; sha256="0s3gbf3s5mf00d5mkbqhd9wwnyps7qb4r3zbal8j8nsaspql9nd3"; depends=[plyr]; }; MSiP = derive2 { name="MSiP"; version="1.3.7"; sha256="1n8yl5icd3qkpmx2knxsp4g6jvkbg6hl82jxg9apxkx4nmsvkawz"; depends=[caret dplyr e1071 magrittr mice plyr pROC PRROC ranger tibble tidyr]; }; MSigSeg = derive2 { name="MSigSeg"; version="0.2.0"; sha256="0675nkv5lqw3y19i6bcqhc1jc9qjmyf0x01224d098kfwl74lxiw"; depends=[ggplot2 ggpubr MASS]; }; - MSmix = derive2 { name="MSmix"; version="1.0.0"; sha256="0zwrd6gj2rsijqdclq07dqg3a40sq80jkrx71ndfnjwp97sgqg60"; depends=[BayesMallows bmixture data_table dplyr factoextra fields foreach ggbump ggplot2 gridExtra Rankcluster RColorBrewer Rcpp reshape rlang spsUtil stringr]; }; + MSmix = derive2 { name="MSmix"; version="1.0.2"; sha256="10bdzgx21y8xqggj98lv17mb2dv39ay6k0l5mz3dsn44967mv7rm"; depends=[BayesMallows bmixture data_table dplyr factoextra fields foreach ggbump ggplot2 gmp gridExtra magrittr Rankcluster RColorBrewer Rcpp reshape rlang scales spsUtil]; }; MSoutcomes = derive2 { name="MSoutcomes"; version="0.2.0"; sha256="037kpsi24anid9brf9s4yrknyxi5c9xyxnckvh2f5m1wxbl7bmlj"; depends=[dplyr]; }; MSwM = derive2 { name="MSwM"; version="1.5"; sha256="0ny5apvww1537qhiwb3f8x173rh7mypvgpw0i46dkvn897i0dq36"; depends=[nlme]; }; MTA = derive2 { name="MTA"; version="0.6.0"; sha256="0fsn3plw2hh4hbdrzgpjbb7hnfxfxcjz9wgzpn9jy3w910cxv5jj"; depends=[igraph sf]; }; @@ -3126,6 +3186,7 @@ in with self; { MUACz = derive2 { name="MUACz"; version="2.1.0"; sha256="1d771vb2aimr87kyqj7zkmwarmxcxzbh7mvr396pf2zr3h8wi30c"; depends=[dplyr epiDisplay ggplot2]; }; MUS = derive2 { name="MUS"; version="0.1.6"; sha256="0xid624rz0mvd03iy7ydvmx7gkscvsg4kdbaf2nji54ahai3pmn3"; depends=[]; }; MVA = derive2 { name="MVA"; version="1.0-8"; sha256="1xd75qah05jrljl72gr8xzhfj43mnf821jnjv38gflavkvyn89mv"; depends=[HSAUR2]; }; + MVET = derive2 { name="MVET"; version="0.1.0"; sha256="0gmawz2vhyvbj5jg8s26cmf02dxyn6gqhvzik5g4kcwpfwkdfwfy"; depends=[ggplot2 gridExtra]; }; MVLM = derive2 { name="MVLM"; version="0.1.4"; sha256="1zcj405dc4jbiqw6p0fcbam8yc9d6yjpmrx5wjw5zjvig3iqb91k"; depends=[CompQuadForm]; }; MVN = derive2 { name="MVN"; version="5.9"; sha256="014s07nxq014j5hkbd6iwwqykcw8si5sah57gi3n0wb51sv8ip1k"; depends=[boot car energy MASS moments nortest plyr psych]; }; MVNBayesian = derive2 { name="MVNBayesian"; version="0.0.8-11"; sha256="1iaxyp480v91887cn4w3l74907wvbzs3ay4cjgzd8xk2dp47w8bg"; depends=[mvtnorm plyr]; }; @@ -3141,7 +3202,7 @@ in with self; { MWright = derive2 { name="MWright"; version="0.3.2"; sha256="1c57f0wnlhl4gqy17vi93r4fknycvv67b9bifgcvabws390jpx7q"; depends=[cubature]; }; MXM = derive2 { name="MXM"; version="1.5.5"; sha256="15r4jnf1l2nrf67xkpvzg2h7yxxhjlkr454n691ssss9z0zpsgcl"; depends=[bigmemory coxme doParallel dplyr energy foreach geepack Hmisc knitr lme4 MASS nnet ordinal quantreg relations Rfast Rfast2 survival visNetwork]; }; MaOEA = derive2 { name="MaOEA"; version="0.6.2"; sha256="0s8jvp7821mb6xff8xwnh78mhz4qfrbk4g7sp4dfnm2ii7ah9c6b"; depends=[e1071 gtools lhs MASS nnet nsga2R pracma randtoolbox reticulate stringr]; }; - MacBehaviour = derive2 { name="MacBehaviour"; version="1.1.3"; sha256="03psrcb5lss1d441bzyk6jis63qj4b4xm1kif3k94a8jkk2i5gjh"; depends=[dplyr httr openxlsx rjson]; }; + MacBehaviour = derive2 { name="MacBehaviour"; version="1.2.2"; sha256="0z4d1g4b3fv63r1c4b64aj0lg0dyzyhvjgmj59gpcizl65jg6dw6"; depends=[httr openxlsx rjson]; }; MachineShop = derive2 { name="MachineShop"; version="3.7.0"; sha256="073v778c7zkpxhhdvqc4hiqlgj5ws9490cqpz22bk659f8f63bav"; depends=[abind cli dials foreach ggplot2 kernlab magrittr Matrix nnet party polspline progress recipes rlang rsample Rsolnp survival tibble]; }; MacroZooBenthosWaterA = derive2 { name="MacroZooBenthosWaterA"; version="0.1.0"; sha256="15b90g7nw82dmpfarx5qm159jmrpp915qz26vv3ya6ky4g2kl6ic"; depends=[]; }; MadanText = derive2 { name="MadanText"; version="0.1.0"; sha256="1sz3mwb74yvj5ijmpm7zdwsgyvhs6rs8fpy1mpw538r5jx4xbzg8"; depends=[dplyr hwordcloud lattice PersianStemmer shiny shinythemes stopwords stringi stringr textmineR tidyr tidytext tm topicmodels udpipe xlsx]; }; @@ -3150,6 +3211,7 @@ in with self; { MagmaClustR = derive2 { name="MagmaClustR"; version="1.2.0"; sha256="1hbdppqymi4qsacp0f1lpq3042zs5gbpdshmmg3mb2v26badss4h"; depends=[broom dplyr ggplot2 magrittr mvtnorm plyr purrr Rcpp rlang tibble tidyr tidyselect]; }; MainExistingDatasets = derive2 { name="MainExistingDatasets"; version="1.0.2"; sha256="16g741hzckla6amhwa54bhg3l3700sp43p6mijbb5065qnviw5y9"; depends=[config dplyr DT glue golem htmltools htmlwidgets magrittr openxlsx pkgload processx rlang sf shiny spData tidyr tmap tmaptools]; }; MajKMeans = derive2 { name="MajKMeans"; version="0.1.0"; sha256="1zphrxyx3jd6rnh1y1qnc6bip34kfqk1a5ms4ps39gfngznh482m"; depends=[MASS]; }; + MajMinKmeans = derive2 { name="MajMinKmeans"; version="0.1.0"; sha256="0lq2qjlha1bd76wlgxbwr9j55yjhwpj380nfi7kx91j50qhdsr9x"; depends=[MASS]; }; MakefileR = derive2 { name="MakefileR"; version="1.0"; sha256="1pfjic2lsar8ghbb6byr4rqrs30qrgfih092z4rxdpsiwkk3y7l1"; depends=[magrittr]; }; ManagedCloudProvider = derive2 { name="ManagedCloudProvider"; version="1.0.0"; sha256="0glhx9ylpx2s8mi711gblapw6qnv80nd4wahph65g6ddngvmgv73"; depends=[adagio DockerParallel jsonlite]; }; MandalaR = derive2 { name="MandalaR"; version="0.1.0"; sha256="13shj6r416cz11qlwrha468gx1y76vx28xyhap3k0c0b2jxn699b"; depends=[ggplot2]; }; @@ -3171,11 +3233,12 @@ in with self; { MassWateR = derive2 { name="MassWateR"; version="2.1.4"; sha256="0hfjddm19r53hig48sfxkkjqib4ip651q2asfgp3639w4akn8pzx"; depends=[curl dplyr flextable ggplot2 ggrepel ggspatial httr lubridate prettymapr raster RColorBrewer readxl rmarkdown sf tibble tidyr units writexl]; }; Massign = derive2 { name="Massign"; version="1.1.0"; sha256="09i32lsrx40rxrnb9alfipfrkipy4mza5nr4gcpn2a5h86ak9290"; depends=[]; }; MatSkew = derive2 { name="MatSkew"; version="0.1.5"; sha256="019v2b1r0bvw84xs50smjb3jdz7gd2adz5d84xd8zq43lnml96d1"; depends=[]; }; + MatchGATE = derive2 { name="MatchGATE"; version="0.0.10"; sha256="1kj60sjpmmab8zjcncp7q6nb0j84kzznz3cspp3j0a5w8fjfn9gp"; depends=[locpol]; }; MatchIt = derive2 { name="MatchIt"; version="4.5.5"; sha256="17l5b6i4bmg3gjjhzagy451zcv2i5xj4j6zzxgiqf955sgywlfdf"; depends=[backports chk Rcpp RcppProgress rlang]; }; MatchLinReg = derive2 { name="MatchLinReg"; version="0.8.1"; sha256="1spkjpm4pviqv52nknhww1vcjc61sgsfsvp0ilpp4srh0ykc8ihh"; depends=[Hmisc Matching]; }; - MatchThem = derive2 { name="MatchThem"; version="1.1.0"; sha256="0qbizfvwx5kagkmgj337lrf9s0nz2rdyb5dwag7yqdfza06mnlvi"; depends=[MatchIt mice rlang survey WeightIt]; }; + MatchThem = derive2 { name="MatchThem"; version="1.2.1"; sha256="12kaaji3nhqggdfhb3hkydsg66p9qpxh95g5z5sf4wym9ks0qhi3"; depends=[MatchIt mice rlang survey WeightIt]; }; Matching = derive2 { name="Matching"; version="4.10-14"; sha256="1c56yqr6zlbgjjw61c10fwbxxh4i5ng2krny9p6cz7d2bmm2id5z"; depends=[MASS]; }; - Matrix = derive2 { name="Matrix"; version="1.6-5"; sha256="0zdrrss4q0g7jify9bp1vvzrdpy62fc6fx3awzbd2wvfc938sv3j"; depends=[lattice]; }; + Matrix = derive2 { name="Matrix"; version="1.7-0"; sha256="0dxd13y6x6pz54ccbcalw2sm646h9pls4bby9zmj40ipvyhbp5zv"; depends=[lattice]; }; MatrixCorrelation = derive2 { name="MatrixCorrelation"; version="0.10.0"; sha256="1na3y1crlj57c1xq9ja3v94cx2dr0myrlx9bxvhhwss3q3r1lgby"; depends=[plotrix pracma progress Rcpp RcppArmadillo RSpectra]; }; MatrixEQTL = derive2 { name="MatrixEQTL"; version="2.3"; sha256="10r6h5bidj44kfbwiml9pkysbikqphfb21ig61qnx0qa12xcl6l8"; depends=[]; }; MatrixExtra = derive2 { name="MatrixExtra"; version="0.1.15"; sha256="0mp0si5923kfakwxcc08288zyx1nrrrpn9srcwax28vrz46l33z9"; depends=[float Matrix Rcpp RhpcBLASctl]; }; @@ -3200,8 +3263,8 @@ in with self; { Mediana = derive2 { name="Mediana"; version="1.0.8"; sha256="0j1ikc2iaxl70134v0gijj2i2g0xgjafvn8rc108r9fhm8rpw564"; depends=[doParallel doRNG foreach MASS mvtnorm survival]; }; MedianaDesigner = derive2 { name="MedianaDesigner"; version="0.13"; sha256="07vzfm583gqk0ars4gamyn21lpcsdxx86nkp227i9yk7lyj0r6kp"; depends=[devEMF doParallel flextable foreach lme4 lmerTest MASS mvtnorm officer pbkrtest Rcpp RcppEigen RcppNumerical rootSolve shiny shinydashboard shinyMatrix]; }; Mega2R = derive2 { name="Mega2R"; version="1.1.0"; sha256="05g0r7z6kiy0pgl7cbcc3c0wbf4wbc7fxdbha8sc77m3hqya882l"; depends=[AnnotationDbi DBI famSKATRC gdsfmt GenomeInfoDb kinship2 pedgene Rcpp RSQLite SKAT]; }; - MendelianRandomization = derive2 { name="MendelianRandomization"; version="0.9.0"; sha256="103pmql4klhvqm7sydbqwqzx2ngbr8dxky8cg495ggpzbpjj131n"; depends=[ggplot2 glmnet iterpc knitr Matrix numDeriv plotly quantreg Rcpp RcppArmadillo rjson rmarkdown robustbase]; }; - Mercator = derive2 { name="Mercator"; version="1.1.2"; sha256="1iixn75vp66gbhllppm8xaxxqg8qbp4m5db8qznnysm8gn5wcl7f"; depends=[ClassDiscovery cluster dendextend flexmix igraph KernSmooth kohonen Polychrome Rtsne Thresher umap]; }; + MendelianRandomization = derive2 { name="MendelianRandomization"; version="0.10.0"; sha256="0g71h1hwvm0ldrklvlliq2ylglb1w7zli0x5sh7z4934h8gyjl88"; depends=[ggplot2 glmnet iterpc knitr Matrix numDeriv plotly quantreg Rcpp RcppArmadillo rjson rmarkdown robustbase]; }; + Mercator = derive2 { name="Mercator"; version="1.1.4"; sha256="0wj8bsrj2v4icj0byllaxyqnph3zpx98gvbxhdzy0zamyrfk57ss"; depends=[ClassDiscovery cluster dendextend flexmix igraph KernSmooth kohonen Polychrome Rtsne Thresher umap]; }; Mestim = derive2 { name="Mestim"; version="0.2.1"; sha256="1dl1fx6aqdz584d79nbm4ykgn915d6mr0m48m83pbr3k6q18varg"; depends=[]; }; MetAlyzer = derive2 { name="MetAlyzer"; version="1.0.0"; sha256="0b5kznmqq7kda5qan5jyxy5s41y367dmq2fxk7mihjnmn9fp282n"; depends=[agricolae data_table dplyr ggplot2 ggrepel openxlsx qvalue rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; MetBrewer = derive2 { name="MetBrewer"; version="0.2.0"; sha256="0x51g5z9cdl043rna9qh4cj16qxahb6ccj9d8rr9d43d860jigp7"; depends=[ggplot2]; }; @@ -3212,10 +3275,13 @@ in with self; { MetaAnalyser = derive2 { name="MetaAnalyser"; version="0.2.1"; sha256="0k58325nb7svihhpga7kdbryr9bi5470qsb8aa5llpiggs8j7sfz"; depends=[DT ggvis rstudioapi shiny]; }; MetaComp = derive2 { name="MetaComp"; version="1.1.2"; sha256="1yb115qdmf5rxmjl4y7qr0i6668n46scs4yjpfq9bmy3w9i4ji1x"; depends=[Cairo data_table dplyr ggplot2 plyr reshape2]; }; MetaCycle = derive2 { name="MetaCycle"; version="1.2.0"; sha256="1lh1msrcz70p5jixz5j83pqa3cid21y7m1zvlk872k16awmif00k"; depends=[gnm]; }; + MetaHD = derive2 { name="MetaHD"; version="0.1.0"; sha256="0qgzipw3gfhm22x70z83zinp7zr5xbyyw502j6p3r31r4k2glkp9"; depends=[corpcor Matrix matrixcalc Rcpp RcppArmadillo]; }; MetaIntegration = derive2 { name="MetaIntegration"; version="0.1.2"; sha256="0dbmpls6gipd81c79lvxqgyhzl3nmi0ma4szv8fcrh50jbwfvsql"; depends=[corpcor knitr MASS Rsolnp]; }; MetaIntegrator = derive2 { name="MetaIntegrator"; version="2.1.3"; sha256="1763in7zcfr4abhwc0sy27c1qbzbhkyjsasrhwdjjmsc645sqxlx"; depends=[AnnotationDbi Biobase BiocManager boot COCONUT data_table DBI dplyr DT GEOmetadb GEOquery ggplot2 ggpubr gplots HGNChelper httpuv magrittr manhattanly Metrics multtest pheatmap plotly plyr pracma preprocessCore readr reshape2 rmarkdown rmeta Rmisc RMySQL ROCR RSQLite stringr zoo]; }; MetaLandSim = derive2 { name="MetaLandSim"; version="2.0.0"; sha256="0dx8vya0w8n9f53g7ppjmz3a9vhs3h6fb7z4fb2c1bhp4yjkbl23"; depends=[coda e1071 googleVis igraph knitr minpack_lm sp spatstat_geom spatstat_random terra zipfR]; }; MetaLonDA = derive2 { name="MetaLonDA"; version="1.1.8"; sha256="0nalkmsii2anw07r16zcpgafb01l87hgpfr1mwc7nggvhdfp3w2g"; depends=[DESeq2 doParallel edgeR ggplot2 gss metagenomeSeq plyr pracma zoo]; }; + MetaNLP = derive2 { name="MetaNLP"; version="0.1.2"; sha256="0ya8hi7bpxnz1a8vjni5sg68yf86bn72wh8676x6xqf6z1qvha18"; depends=[glmnet lexicon textstem tm]; }; + MetaNet = derive2 { name="MetaNet"; version="0.1.2"; sha256="0r3id0ap91g948a10yka1lz82jib3ww91n24vlk4pbik7flxbqpk"; depends=[dplyr ggnewscale ggplot2 ggrepel igraph magrittr pcutils RColorBrewer reshape2 rlang tibble]; }; MetaSKAT = derive2 { name="MetaSKAT"; version="0.82"; sha256="0cbj3xfsnwn4ibqqs12sqyhhaj24ydjpyl1p1gy1dl5405j58ncl"; depends=[SKAT]; }; MetaStan = derive2 { name="MetaStan"; version="1.0.0"; sha256="00rj11q20apw7f5s6vw8fh7qxgfksndyiks1w907zzjlxhy9b4pj"; depends=[BH coda forestplot HDInterval loo metafor Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; MetaSubtract = derive2 { name="MetaSubtract"; version="1.60"; sha256="19xg95g2qgyi90pz3733l596gzdj6dmb0k9i4qmhaq4yck69rrhj"; depends=[]; }; @@ -3227,6 +3293,7 @@ in with self; { MetabolomicsBasics = derive2 { name="MetabolomicsBasics"; version="1.4.5"; sha256="09yfakahah88sqranw56mr56jkqx6bgq52rcaj2bablr7bxswwvh"; depends=[C50 caret e1071 InterpretMSSpectrum pcaMethods plyr rlang rpart webchem]; }; MetaculR = derive2 { name="MetaculR"; version="0.4.1"; sha256="130ic9q221lmnr5wzmw7bbskqzi5gmw8ark5zpw3y8wy9zbv2m98"; depends=[assertthat clipr cowplot dplyr ggplot2 ggrepel httr jsonlite magrittr progress spatstat_geom tidyr verification]; }; MethComp = derive2 { name="MethComp"; version="1.30.0"; sha256="1vmwb4zw4gm2x0j2nzm2vjfj7x19ws8njr6dcglzjpbbha7nxjp6"; depends=[coda nlme rjags]; }; + MethEvolSIM = derive2 { name="MethEvolSIM"; version="0.1.2"; sha256="03ncpy01dvmxrr43jyl8am9hkzp872rdph5padiy9ih4nzxdncmq"; depends=[R6]; }; MethodCompare = derive2 { name="MethodCompare"; version="0.1.2"; sha256="1nxr2fgmfixjkdparavi156qqqchjwaxpjk9i2xgc1yhp1p01pll"; depends=[nlme]; }; MetricGraph = derive2 { name="MetricGraph"; version="1.3.0"; sha256="1pd10pxqvdvqh1jml6rpn2j5w6j0hw87wd9f272yfwd4q9d2c29r"; depends=[broom dplyr ggnewscale ggplot2 igraph lifecycle magrittr Matrix R6 Rcpp RcppEigen rSPDE sf sp tidyr zoo]; }; Metrics = derive2 { name="Metrics"; version="0.1.4"; sha256="0fh8qbjlwzagh272lgwr4bxcqcjb1qpz53mgs8rzlvncax6nk5bk"; depends=[]; }; @@ -3245,16 +3312,16 @@ in with self; { MicroMacroMultilevel = derive2 { name="MicroMacroMultilevel"; version="0.4.0"; sha256="1q5cyqr4hdl1wp2isk6p4p084i83kg6hd406wdp1nj9lv5i0xvgw"; depends=[]; }; MicroMoB = derive2 { name="MicroMoB"; version="0.1.2"; sha256="0ghab143lr333v7qih30jc9n78pwcgam4nzaz7j1g4cnis5wfkbx"; depends=[abind jsonlite]; }; MicroNiche = derive2 { name="MicroNiche"; version="1.0.0"; sha256="166ci4crkwnnh05rhs5hyrljgm4cdf7gp0ff8kjxjmd60byw80mz"; depends=[ggplot2 reshape2]; }; - MicrobiomeStat = derive2 { name="MicrobiomeStat"; version="1.1"; sha256="1j5sar85a1gksc83pc4ypxwb0c7whxglx069zarphrgqfazcr1m4"; depends=[foreach ggplot2 ggrepel lmerTest MASS Matrix matrixStats modeest phyloseq statmod]; }; + MicrobiomeStat = derive2 { name="MicrobiomeStat"; version="1.2"; sha256="1kpc68sl63k104xy7r6f3gxan0yx0rs7ksn8ldbq8xla00ddflgq"; depends=[foreach ggplot2 ggrepel lmerTest MASS Matrix matrixStats modeest statmod]; }; MicrobiomeSurv = derive2 { name="MicrobiomeSurv"; version="0.1.0"; sha256="00wx8vdbkxcn6cp243vbxyzx52hpcxpvxx8hq44gykc7238qcvhv"; depends=[dplyr ggplot2 glmnet gplots lmtest microbiome pls superpc survival survminer tidyr]; }; Microsoft365R = derive2 { name="Microsoft365R"; version="2.4.0"; sha256="0vcp8nhphl9yp4rp53nvkm82zqmn1jsc9m6agxmmsqby8795p7h1"; depends=[AzureAuth AzureGraph curl httr jsonlite mime R6 vctrs]; }; - MigConnectivity = derive2 { name="MigConnectivity"; version="0.4.6"; sha256="0lyqjhhnba83niv1rmgxz3f9kq022fnck3l2m27zc1lw92l6lhfv"; depends=[coda geodist gplots MASS ncf R2jags RMark sf shape terra VGAM]; }; + MigConnectivity = derive2 { name="MigConnectivity"; version="0.4.7"; sha256="08bzis7rkczymvr2bqiih59yn94l0fjhkn0p9lpv875pwbvhmw1j"; depends=[coda geodist gplots MASS ncf R2jags RMark sf shape terra VGAM]; }; MigrationDetectR = derive2 { name="MigrationDetectR"; version="0.1.1"; sha256="0qq5xac4j8bm1705rmjvbcxhdhrq0pfqzrlb9vgbnsfm4l0iy84w"; depends=[assertthat dplyr lifecycle lubridate tibble tidyr]; }; MinEDfind = derive2 { name="MinEDfind"; version="0.1.3"; sha256="1y0iv92mp7hf14vrj54qd0yvmjrv52jv3vg25kc5q7pml63njkqa"; depends=[ggplot2 gridExtra Iso]; }; MindOnStats = derive2 { name="MindOnStats"; version="0.11"; sha256="13995v4n0hfb53w02jk81pl7nazkvqwwv87y1sr99jr9ppzc08mz"; depends=[]; }; Minirand = derive2 { name="Minirand"; version="0.1.3"; sha256="19lib0qh3xfzvpgsskl3yypmjygss0w7pimz0136av0px5b4jran"; depends=[]; }; MisRepARMA = derive2 { name="MisRepARMA"; version="0.0.2"; sha256="0bay8grq49yin9yy9h9ynb8flsbrb10h4lp7sdzp9ih5b9w21y7z"; depends=[boot mixtools tseries]; }; - MiscMetabar = derive2 { name="MiscMetabar"; version="0.7.10"; sha256="1n0hzjprrkj22kvz4vai3x07jzn22ajjf3ynbs1y15v29spra0f2"; depends=[ape dada2 dplyr ggplot2 lifecycle phyloseq rlang]; }; + MiscMetabar = derive2 { name="MiscMetabar"; version="0.9.1"; sha256="002vnd2hbd5r5zjm461w7wsfngpc9zpwidnyiimmhazdm3jbrrbi"; depends=[ape dada2 dplyr ggplot2 lifecycle phyloseq purrr rlang]; }; MissCP = derive2 { name="MissCP"; version="0.1.0"; sha256="0xmfkxwlkci11wwxdazs25k6z8apcl2vffkbpv8zic5lx1r9g2k4"; depends=[factoextra ggplot2 glmnet mvtnorm Rcpp RcppArmadillo sparsevar]; }; MissMech = derive2 { name="MissMech"; version="1.0.4"; sha256="0r4jdy2wr4rqpyshlgfvfhvq78v0w6g7v7iixljgh4kv9ryl476d"; depends=[]; }; MissingHandle = derive2 { name="MissingHandle"; version="0.1.1"; sha256="09mfjyygxmcpd50148a5pcda0c7gvfrxgxbw1v6i01ymwpfb4b2p"; depends=[dplyr imputeTS zoo]; }; @@ -3263,6 +3330,7 @@ in with self; { Missplot = derive2 { name="Missplot"; version="0.1.0"; sha256="00qpmkmfv3k13faxb2wqcdcmd5q5abdhjwr8rrf9b0bv6qqnlm84"; depends=[]; }; MitoHEAR = derive2 { name="MitoHEAR"; version="0.1.0"; sha256="1lb36w374wjp6f9ydkas21rwc2shlav1xq2rfzig1k034fkva8bj"; depends=[Biostrings circlize ComplexHeatmap dynamicTreeCut GenomicRanges ggplot2 gridExtra IRanges magrittr mcclust rdist reshape2 rlist Rsamtools]; }; MittagLeffleR = derive2 { name="MittagLeffleR"; version="0.4.1"; sha256="1qlz418im27v7q3xk09a2w3zdx7ky5imcyi3kpg1s3bz5zx57p2f"; depends=[stabledist]; }; + MixAll = derive2 { name="MixAll"; version="1.5.16"; sha256="134nf62cc2l998dl6vhp4nlyjfbybw9l9rycnxys4i0wzcsl8lz5"; depends=[Rcpp rtkore]; }; MixGHD = derive2 { name="MixGHD"; version="2.3.7"; sha256="0l1qivl9a5b8rayg9srxlgkk4wilv2m9yw4lsca29s5wd3wpyksv"; depends=[Bessel cluster e1071 ghyp MASS mixture mvtnorm numDeriv]; }; MixMatrix = derive2 { name="MixMatrix"; version="0.2.6"; sha256="007vx59v5h3pfawg6slqgbs3b8dvbhcfh4cvasfydidiiyaggjdc"; depends=[CholWishart Rcpp RcppArmadillo]; }; MixOptim = derive2 { name="MixOptim"; version="0.1.2"; sha256="14blyb1dqbdb14rby4nrggpqdx6b43lbb2xwi3059biq9mrj3a2x"; depends=[desirability ggplot2 patchwork rlang]; }; @@ -3284,7 +3352,7 @@ in with self; { MoBPS = derive2 { name="MoBPS"; version="1.6.64"; sha256="12czwx362pn0crj047rqb9ambl1fw73k474i7vcxhz53kbw21wj0"; depends=[]; }; MoEClust = derive2 { name="MoEClust"; version="1.5.2"; sha256="0wixcga2f06kpp7mq1nb32ya2v2wlx5r9h74danjfbhi3nvky903"; depends=[lattice matrixStats mclust mvnfast nnet vcd]; }; MoLE = derive2 { name="MoLE"; version="1.0.1"; sha256="0bq19vwqjn5hl4mw5imkydbp39gal992vnh2dwrq8bb8cmj3qh91"; depends=[]; }; - MoNAn = derive2 { name="MoNAn"; version="0.1.3"; sha256="1n9vxmh1vx6p5cw91960cgvg7h9ga79lpdcz22cds74zxrnprpi9"; depends=[snowfall]; }; + MoNAn = derive2 { name="MoNAn"; version="1.0.0"; sha256="1w33dsvwl359n9a97cvcp8c6j3js0d8q4j0w2daqllk9swnbw8i8"; depends=[snowfall]; }; MoTBFs = derive2 { name="MoTBFs"; version="1.4.1"; sha256="03c1k5vvswlhbsivw6yznw1v0cdl8avs514iaa2v2994j2yk40j6"; depends=[bnlearn ggm lpSolve Matrix quadprog]; }; MobileTrigger = derive2 { name="MobileTrigger"; version="0.0.31"; sha256="1zbnxdxh6gr4sgpi10i0pnd85f7i842105jgjswacziqamby6mcy"; depends=[caret ggplot2 kableExtra knitr mailR plyr XML yaml]; }; ModEstM = derive2 { name="ModEstM"; version="0.0.1"; sha256="136g7rdphprx5b2xmb4jnixaam23g78m3fyfwz3mfx1w23ajf4r1"; depends=[dplyr rlang]; }; @@ -3296,18 +3364,18 @@ in with self; { ModelMetrics = derive2 { name="ModelMetrics"; version="1.2.2.2"; sha256="0mrlsw4c5y1vdsqynxr2dcvmhh5h37pnd71jw5a5djpbda9g21jy"; depends=[data_table Rcpp]; }; Modelcharts = derive2 { name="Modelcharts"; version="0.1.0"; sha256="1jy78kyyh4r13px2d5bm7fra5bkcpimzfji0hmydspkfi3qla37x"; depends=[dplyr plotly]; }; Modeler = derive2 { name="Modeler"; version="3.4.5"; sha256="15gbg5568qj81wp6yy31amb2b7wl1wvlmgpmdp29lvz1p33jx2y1"; depends=[class ClassComparison ClassDiscovery e1071 neuralnet nnet oompaBase randomForest rpart TailRank]; }; - MolgenisArmadillo = derive2 { name="MolgenisArmadillo"; version="2.3.0"; sha256="16b1mplxhy492i1j581lrd0crk1rzcyxcxda9b5dzvzhcjg81376"; depends=[arrow base64enc dplyr httr MolgenisAuth purrr rlist stringr tibble tidyr urltools]; }; + MolgenisArmadillo = derive2 { name="MolgenisArmadillo"; version="2.6.3"; sha256="11xy9cwnhacrxnyxhr8zs25yr20f27vqnh9nfm7x1180g1b2b4fr"; depends=[arrow base64enc cli dplyr httr httr2 MolgenisAuth purrr readr rlist stringr tibble tidyr urltools]; }; MolgenisAuth = derive2 { name="MolgenisAuth"; version="0.0.25"; sha256="1ggij166zy0z05hmpwzdx2s1j38s9zr2ldayxljmcl348ds7rk7n"; depends=[httr urltools]; }; MomTrunc = derive2 { name="MomTrunc"; version="6.0"; sha256="0nfvq6ry1c5g1xjvf2qyr5pzpnsy420m6xgj0n3aj00wi0ifdyiz"; depends=[hypergeo mvtnorm Rcpp RcppArmadillo tlrmvnmvt]; }; Momocs = derive2 { name="Momocs"; version="1.4.1"; sha256="0g8mxk62pdif47p96pzqzfjdjarqwyk71zw9avsgy160mz8mpd81"; depends=[cluster dendextend dplyr geometry geomorph ggplot2 jpeg magrittr MASS progress RColorBrewer sf sp tibble vegan]; }; Mondrian = derive2 { name="Mondrian"; version="1.1-1"; sha256="0di35qc1hgx3l8gnr2l6gv87yhqsw9b7wi2wc497ydby6c9m3307"; depends=[RColorBrewer]; }; MonetDB_R = derive2 { name="MonetDB.R"; version="2.0.0"; sha256="0b5flc9l4nshy2fmwxbzcsn7pdivwy3x6kic94ppyyiqzz41h0b1"; depends=[codetools DBI digest testthat]; }; MonoInc = derive2 { name="MonoInc"; version="1.1"; sha256="14rykw3bfj0vznz0rw4vsg1k4vanfv9cy867vspw966ncl4bw70h"; depends=[compare doParallel foreach iterators sitar]; }; - MonoPhy = derive2 { name="MonoPhy"; version="1.3"; sha256="184nvwmxi28awq8fj1q0mliilbd4kaag673jydr47q1acql0dnmb"; depends=[ape phangorn phytools RColorBrewer taxize]; }; + MonoPhy = derive2 { name="MonoPhy"; version="1.3.1"; sha256="120vpz40iil4j6rdhnnhss4rmpfcyh3h0dpw3qkmzadb7mywr7dr"; depends=[ape phangorn phytools RColorBrewer taxize]; }; MonoPoly = derive2 { name="MonoPoly"; version="0.3-10"; sha256="0ls3sjfkinp9c5002ww0xm4l2galf20w2f45nm5irkk9sbqas0jq"; depends=[quadprog]; }; Monte_Carlo_se = derive2 { name="Monte.Carlo.se"; version="0.1.1"; sha256="1bkmah8s8hm3yxs8gz1ssr15s4l9s37675g7agx3g7f9a72v9zbs"; depends=[]; }; MonteCarlo = derive2 { name="MonteCarlo"; version="1.0.6"; sha256="1jwq3by8zfy6sbzahcj5l0vicqn7yyqpb7xhfsaymfspm7xyq6pj"; depends=[abind codetools reshape rlecuyer snow snowfall]; }; - MonteCarloSEM = derive2 { name="MonteCarloSEM"; version="0.0.6"; sha256="0mnva4hd02a6f4fpll6ra4nn0chlx8wjixp1jx40krg3xnikqkj1"; depends=[lavaan Matrix]; }; + MonteCarloSEM = derive2 { name="MonteCarloSEM"; version="0.0.8"; sha256="0l9c6a8yxjd2n1fvsswx3csgz18g7d33ybbmpxlx6csl5f299ljd"; depends=[lavaan Matrix]; }; Morpho = derive2 { name="Morpho"; version="2.12"; sha256="1hg1jr0y11v93mqg2kn8n841nbsiffhyyr2kswj7kk664vlpril0"; depends=[bezier colorRamps doParallel foreach jsonlite MASS Matrix Rcpp RcppArmadillo rgl Rvcg sf]; }; MorphoTools2 = derive2 { name="MorphoTools2"; version="1.0.1.1"; sha256="08n9l905pfls50p278sypf8xxq6bs56f5a5b5wlxwy11flccpyia"; depends=[ade4 candisc car class ellipse heplots MASS plot3D StatMatch vegan]; }; Morphoscape = derive2 { name="Morphoscape"; version="1.0.2"; sha256="1f4cj5086r1849dwmha8drf7jq56p7bp0fj2liqksppy7gxmdrs4"; depends=[alphahull automap concaveman ggplot2 scales sp spatial viridisLite]; }; @@ -3330,13 +3398,13 @@ in with self; { MultNonParam = derive2 { name="MultNonParam"; version="1.3.9"; sha256="0p66pqairn0k3ciz31ykb2kk0mr4jyzvarkf1knlh3dkvagh7pvj"; depends=[ICSNP]; }; MultOrdRS = derive2 { name="MultOrdRS"; version="0.1-3"; sha256="1f23im0m77y8aqdnmkcgdgfx77z84wlwih1wv74by15m4ysj4l2h"; depends=[Rcpp RcppArmadillo statmod]; }; MultSurvTests = derive2 { name="MultSurvTests"; version="0.2"; sha256="04crh4hbfhl8cr0faawv71lyabyilhxpg6i8sr9ki80982mbzcnd"; depends=[Rcpp RcppArmadillo Rdpack]; }; - MultiATSM = derive2 { name="MultiATSM"; version="0.3.5"; sha256="0hcmf5hy4rab0kzwzxs15bs5n0czsc68m4f8j3ib4hjf33rd4i1a"; depends=[ggplot2 hablar pracma wrapr zoo]; }; + MultiATSM = derive2 { name="MultiATSM"; version="0.3.6"; sha256="01q1r593v111wqaa2bqlrmsqgjpk39kfdxx6vj7ni9prbypxnbxm"; depends=[ggplot2 hablar pracma wrapr zoo]; }; MultiBD = derive2 { name="MultiBD"; version="0.2.0"; sha256="1qjfr8hx8sr5m8370yzi09r8jnh3i6907wzj3v4h83vmjh81db71"; depends=[BH Rcpp RcppParallel]; }; MultiCOAP = derive2 { name="MultiCOAP"; version="1.1"; sha256="1209pv52lgshfk67nfkp4fq4fm7k9g5ly2yilrzwihywsym8yxmp"; depends=[irlba MASS Rcpp RcppArmadillo]; }; MultiClassROC = derive2 { name="MultiClassROC"; version="0.1.0"; sha256="06ns1yl16yxaksiv1mjwzkixc03mzz4rlidkzan0nxi9fqfp7nvc"; depends=[ggplot2 pROC]; }; MultiFit = derive2 { name="MultiFit"; version="1.1.1"; sha256="086bnqp61mfanrhi7dqaq5j2ddg3rfiyms0f5wj34svcjal9wjvc"; depends=[data_table Rcpp RcppArmadillo]; }; MultiGlarmaVarSel = derive2 { name="MultiGlarmaVarSel"; version="1.0"; sha256="1cpxy716ca7xa6y7sjrrssx6r4wc1fr2p0i5im5s745xlc66qi06"; depends=[ggplot2 glmnet Matrix]; }; - MultiGroupO = derive2 { name="MultiGroupO"; version="0.1.0"; sha256="18d7wfsfyqzrjicp2grfgh582pr6a1fqx7xbnqaj93x3w30pxscg"; depends=[cowplot expm ggplot2 ggrepel gplots gridExtra mgm mvtnorm plsgenomics qgraph rlist]; }; + MultiGroupO = derive2 { name="MultiGroupO"; version="0.3.0"; sha256="0vyq1xzxh6zjzdsvp0gib32xxz1c3672kj3ifn5fv0bf8yjjc2gk"; depends=[cowplot expm ggplot2 ggrepel gplots gridExtra lemon mgm mvtnorm plsgenomics qgraph rlist]; }; MultiGroupSequential = derive2 { name="MultiGroupSequential"; version="1.1.0"; sha256="0mx0a10260ks77njxf7yhxwhw66b7rjlqkjxmidvxbl6r0jfgr5b"; depends=[hommel OpenMx]; }; MultiJoin = derive2 { name="MultiJoin"; version="0.1.1"; sha256="0cfk6yc5jagj9y8xybw6yg0yph4zah2vzaxv0384ad6r0r3x3nm8"; depends=[]; }; MultiKink = derive2 { name="MultiKink"; version="0.2.0"; sha256="14npzvidqiy25ldg2g4vyj6bbrmi9vbpswbm9ah9hc4sdjdq344h"; depends=[gam Matrix pracma quantreg]; }; @@ -3359,7 +3427,7 @@ in with self; { MultiplierDEA = derive2 { name="MultiplierDEA"; version="0.1.19"; sha256="0ns74496grklacpij2cvbv116kc77wa8kv3jdy9fjzxk8yd6kv4d"; depends=[dplyr lpSolveAPI ompr ompr_roi ROI ROI_plugin_glpk]; }; MultiscaleDTM = derive2 { name="MultiscaleDTM"; version="0.8.3"; sha256="13kslxxbyil5y4ci5s9r0n0ymsrh8c65wvsdzhcgafh9ldr6l1ww"; depends=[dplyr raster Rcpp RcppArmadillo rgl shiny terra]; }; MultisiteMediation = derive2 { name="MultisiteMediation"; version="0.0.4"; sha256="0kkw6zxw29qmgd9nlgqjlyh99icxzkkqnpzzanxx8pn7m2ww0wkf"; depends=[ggplot2 lme4 MASS psych statmod]; }; - MultivariateAnalysis = derive2 { name="MultivariateAnalysis"; version="0.4.4"; sha256="0vpk7iplmb0cyrqal90m1y4ym8wng2b8k9ydh26xaga4r974qd2p"; depends=[ape biotools candisc corrplot crayon PCAmixdata]; }; + MultivariateAnalysis = derive2 { name="MultivariateAnalysis"; version="0.5.0"; sha256="1hphl6swqkfjqbybkcpvf0bda6jf434v7l6pqzlviqzlnww94riv"; depends=[biotools candisc corrplot crayon ecodist factoextra ggdendro ggplot2 gridExtra magrittr NbClust PCAmixdata plotly rstudioapi]; }; MultivariateRandomForest = derive2 { name="MultivariateRandomForest"; version="1.1.5"; sha256="0mww4x1hqraiyvmw2f9s6h180kplmj36hb7zfg7xlkmgdf4apk8d"; depends=[bootstrap Rcpp]; }; MultiwayRegression = derive2 { name="MultiwayRegression"; version="1.2"; sha256="1w0yd3nwrqpk5nhnrcrd06fbdhg4kizx2p8mpspqnw8qcn970pfl"; depends=[MASS]; }; MulvariateRandomForestVarImp = derive2 { name="MulvariateRandomForestVarImp"; version="0.0.2"; sha256="0gbr44rwwb4nq2s4ix1ckfdjahsfx9sjfbww5wjcm1v68w6bk5ca"; depends=[MASS MultivariateRandomForest]; }; @@ -3381,7 +3449,6 @@ in with self; { NB_MClust = derive2 { name="NB.MClust"; version="1.1.1"; sha256="0hzmrszxgx3pylf9pjjwk2ryjhwz7naxxkhcqpnfjv337vv5dg0i"; depends=[MASS]; }; NBAloveR = derive2 { name="NBAloveR"; version="0.1.3.3"; sha256="0k1f14srzks26x5wnhj8mrfwcq7wgbywcklr804lxsh04h4d6pwp"; depends=[dplyr magrittr tidyr]; }; NBBDesigns = derive2 { name="NBBDesigns"; version="1.1.0"; sha256="0vb7iglzbkk3dvh4z7ia7zjds4i2anw5y50vjg2k0sb9q0zi5hvp"; depends=[]; }; - NBBttest = derive2 { name="NBBttest"; version="1.0.1"; sha256="13p6kkakg2hd27xmh6vjnn8w161qaw23xzsx99pjgvz7w0n9idv3"; depends=[gplots gtools]; }; NBDdirichlet = derive2 { name="NBDdirichlet"; version="1.4"; sha256="11iqn74k7q6g7if35237jzabknjcdaanbq83hjicb2m0l5h31vvn"; depends=[]; }; NBDesign = derive2 { name="NBDesign"; version="2.0.0"; sha256="0593rh2lf8wlxzjmwh2xx3jsb6miqx0wipqw9di10cbxbf6binb1"; depends=[MASS PWEALL]; }; NBLDA = derive2 { name="NBLDA"; version="1.0.1"; sha256="0h71c3kgqaijpnrz2cx2k4311j61paxnj96kwpv2dcdy9rhkbwar"; depends=[ggplot2]; }; @@ -3398,17 +3465,16 @@ in with self; { NCmisc = derive2 { name="NCmisc"; version="1.2.0"; sha256="10wzznqa26fxyj6bl979qmq29p3dkr8yap4s70l3mwhhk33zpz16"; depends=[]; }; NCutYX = derive2 { name="NCutYX"; version="0.1.0"; sha256="0r2ghnvrbya3p1d8rb5bsnz5v852vvc6rq65yafn2xzr7886wrg2"; depends=[fields glmnet MASS mvtnorm Rcpp RcppEigen]; }; NDP = derive2 { name="NDP"; version="0.1.0"; sha256="0wmld7g4w3d7d8lyj4132h3jpr8ng8kpy4ssqjp8r0lqwif2i86b"; depends=[rmarkdown shiny]; }; - NEONiso = derive2 { name="NEONiso"; version="0.6.4"; sha256="0fwz6clfl9l38pmks1qq3sys8jnb7mib81nfq1k1hdwhjknr76hz"; depends=[caret data_table dplyr ggplot2 gridExtra httr lifecycle lubridate magrittr neonUtilities R_utils rhdf5 rlang tidyselect zoo]; }; + NEONiso = derive2 { name="NEONiso"; version="0.7.0"; sha256="1nkwymy6zyyk8g6lxk45srqf285329x60plhkbkm0wif6kx777s0"; depends=[caret data_table dplyr ggplot2 gridExtra httr lubridate magrittr neonUtilities R_utils rhdf5 rlang tidyselect zoo]; }; NEpiC = derive2 { name="NEpiC"; version="1.0.1"; sha256="11zf112xcsg3k93vks2fnsflw2v2d56a0bsjpd460d21k3gipfz8"; depends=[igraph PairedData]; }; NFCP = derive2 { name="NFCP"; version="1.2.1"; sha256="16dvk8jiyzd94lfif0nkwc0ix05is8bhyykaaa6p1irwgzk8cia4"; depends=[curl FKF_SP LSMRealOptions MASS mathjaxr numDeriv Rdpack rgenoud]; }; NFLSimulatoR = derive2 { name="NFLSimulatoR"; version="0.4.0"; sha256="1s11jr684dvc25rapdi1mslk4z8ajrcf20ibnz6rr22ga3pylxyn"; depends=[data_table nflfastR progress]; }; NFWdist = derive2 { name="NFWdist"; version="0.1.0"; sha256="0833lg0pd763awrc6ibidwf2ldl79w9lmm5acq4bnpd2hzsx60l8"; depends=[]; }; NGBVS = derive2 { name="NGBVS"; version="0.3.0"; sha256="09pmqbmmn2ym2r61xqd86dv831x94gv8z7cga5863lcjy93mpy2a"; depends=[Rfast]; }; - NGCHM = derive2 { name="NGCHM"; version="1.0.1"; sha256="12n15ja1r1vj9znf8rlp1xmknh3ma36557vvp6mxcv5vf4fwpzd3"; depends=[digest htmltools httr jsonlite logger tsvio]; }; + NGCHM = derive2 { name="NGCHM"; version="1.0.3"; sha256="1gclzn4ps2jx452w3rvp38mc4sj8920w2dmhvafxnfk0dj25pada"; depends=[digest htmltools httr jsonlite logger tsvio]; }; NGLVieweR = derive2 { name="NGLVieweR"; version="1.3.1"; sha256="15azdlr3a6gaacjcjpi61rwmx7c3idfn3w1zpgbaqmhxd9a4m6f0"; depends=[htmlwidgets magrittr shiny]; }; NHANES = derive2 { name="NHANES"; version="2.1.0"; sha256="0aphv3rakfcfrv2km1xyxpj1bxiazy6gwrvs7lyhxmq468fk4c9a"; depends=[]; }; NHLData = derive2 { name="NHLData"; version="1.0.0"; sha256="0dfqalccbkmqrn3h1z6s78l818c8sqn7d6yc8mg872ygmszryci7"; depends=[]; }; - NHMSAR = derive2 { name="NHMSAR"; version="1.19"; sha256="0xbnzq3zlpda1xcfiz1lsa5q5frvrsf87z3xc41fvk1n5viak5fk"; depends=[glasso lars ncvreg ucminf]; }; NHPoisson = derive2 { name="NHPoisson"; version="3.3"; sha256="1i6n59ckcxk1hwyz97jmnv4yb96ianjma6ka8lpz79ivs41jniad"; depends=[car]; }; NHSDataDictionaRy = derive2 { name="NHSDataDictionaRy"; version="1.2.5"; sha256="17jvyjxc28bmxadvcjhal4shklh24636zw6hrc7p7m71lbcw86aw"; depends=[dplyr httr magrittr purrr rvest stringr tibble xml2]; }; NHSRdatasets = derive2 { name="NHSRdatasets"; version="0.3.0"; sha256="1l4zrprnb3fsb2mibq8749a15xbvhn1g5yajbjf7gls81c8f2r7p"; depends=[tibble]; }; @@ -3422,7 +3488,7 @@ in with self; { NLPclient = derive2 { name="NLPclient"; version="1.0"; sha256="0jhlz9mqziyk5574vl8qjjs4g75x27rlk90wvzm3q9kjrjyvad35"; depends=[curl NLP xml2]; }; NLPutils = derive2 { name="NLPutils"; version="0.0-5.1"; sha256="1ca7cqfjzrhn0idgw8viqlr2w4lkzng64bqk8hvd08qm7bgg5vjl"; depends=[NLP qdap SnowballC]; }; NLRoot = derive2 { name="NLRoot"; version="1.0"; sha256="1x8mcdgqqrhyykr12bv4hl4wbh1zw2qgpnd2yrm68kb92iy95rh4"; depends=[]; }; - NMA = derive2 { name="NMA"; version="1.4-2"; sha256="0lwsys3imcr7n2bnyg9isp8jj00mz0ng8zzp79d1ann791dvsb3z"; depends=[forestplot ggplot2 MASS metafor stringr]; }; + NMA = derive2 { name="NMA"; version="1.4-3"; sha256="09y3arzw08054xb1y3nmnnzxybgjm2yyvkc530avpqkl1yrb1ap2"; depends=[forestplot ggplot2 MASS metafor stringr]; }; NMADiagT = derive2 { name="NMADiagT"; version="0.1.2"; sha256="0fskc3ldfdl17gazpfr2hixy79n7db4c1f5yl1jalhwxiabnxjwp"; depends=[coda ggplot2 imguR ks MASS MCMCpack plotrix Rdpack reshape2 rjags]; }; NMAoutlier = derive2 { name="NMAoutlier"; version="0.1.18"; sha256="0h0pxjg6ppz9zv7wcv1dka5g0f9wxk3bnwicfpsv1advcam4vmmn"; depends=[ggplot2 gridExtra MASS meta netmeta reshape2]; }; NMF = derive2 { name="NMF"; version="0.27"; sha256="1y9y7xpfd9y8j5b8s2x5g61455ilpgqpdhrirpz58xjarbph4hxg"; depends=[Biobase BiocManager cluster codetools colorspace digest doParallel foreach ggplot2 gridBase RColorBrewer registry reshape2 rngtools stringr]; }; @@ -3434,13 +3500,13 @@ in with self; { NMTox = derive2 { name="NMTox"; version="0.1.0"; sha256="1slz6bq57l3f2wqd2nhm3b7dag6vg7wy9zi5rpl7ld1yyqfb0wfp"; depends=[dplyr forcats ggplot2 gridExtra Iso tidyr]; }; NMVANOVA = derive2 { name="NMVANOVA"; version="1.1.0"; sha256="1jlqyg5vn7j8srvifjghd5a7820kadl8kbwib4qxalrfprq81h8p"; depends=[]; }; NMcalc = derive2 { name="NMcalc"; version="0.0.3"; sha256="199pd9wmakrk96vqb1gwwq6pwsk00r4vn6r3ff9awylwl6vbs7bq"; depends=[data_table]; }; - NMdata = derive2 { name="NMdata"; version="0.1.5"; sha256="0lmnfwrdngqkam1kw8kcb9wk4gk7dxrnfwdjwgfh0dnvr0lnp863"; depends=[data_table fst]; }; + NMdata = derive2 { name="NMdata"; version="0.1.6"; sha256="0jyfms68p18503460phhc9cw3vrv2lp7mcg9d2x498vqn0kbs5xb"; depends=[data_table fst]; }; NMsim = derive2 { name="NMsim"; version="0.1.0"; sha256="1lmfb6h78vj6r6n6br9awkxrq445f9cgzhsz06rzkydnb10xldrk"; depends=[data_table fst MASS NMdata R_utils xfun]; }; NNMIS = derive2 { name="NNMIS"; version="1.0.1"; sha256="1w2i4xlx249p589yqdgbx1ra406ycxw729vbk1lqadbn71m6blaz"; depends=[survival]; }; - NNS = derive2 { name="NNS"; version="10.7"; sha256="0ffia8svi1gvsjr2a0y5mgqgvpjdw3y1c2mjxpi8dr3hamwqx4g1"; depends=[caret data_table doParallel foreach meboot quantmod Rcpp RcppParallel Rfast rgl stringr xts zoo]; }; + NNS = derive2 { name="NNS"; version="10.8.2"; sha256="11jacanqf7c7kaarwc6micmhzg47sna1lfj5fkpvpa9396xpbrjd"; depends=[data_table doParallel foreach plyr quantmod Rcpp RcppParallel Rfast rgl xts zoo]; }; NNTbiomarker = derive2 { name="NNTbiomarker"; version="0.29.11"; sha256="0sqlf7vzhpmq2g98c2qlrcqn3ba4ycfxbczgcjiqqhqsvgkpacc1"; depends=[magrittr mvbutils shiny stringr xtable]; }; NNbenchmark = derive2 { name="NNbenchmark"; version="3.2.0"; sha256="086smk3xy6p6ianw41h3gx806q7h28v1dg9d3khsrwyyf9gn8xyp"; depends=[pkgload R6]; }; - NO_PING_PONG = derive2 { name="NO.PING.PONG"; version="0.1.6"; sha256="1i8pwk4p43yqmk8irkmvza080sngmng0wv1yr847253a0frjg9mr"; depends=[MASS MCMCglmm metafor]; }; + NO_PING_PONG = derive2 { name="NO.PING.PONG"; version="0.1.8.7"; sha256="0fszx8a99znc067lpj4h3n5991lvm7iwq8yici8hhizr11f0dc70"; depends=[MASS MCMCglmm metafor]; }; NORMA = derive2 { name="NORMA"; version="0.1"; sha256="193q6dwn8v7k8xq0amjpvb3v6mn7c6agqa487gvjj78dy1qz720a"; depends=[rootSolve]; }; NPBayesImputeCat = derive2 { name="NPBayesImputeCat"; version="0.5"; sha256="05zwa7hhf8p1icgdvvla0r70fgvjm7s38gp69h7wgsq8yl6vd876"; depends=[bayesplot dplyr ggplot2 Rcpp reshape2 rlang]; }; NPCD = derive2 { name="NPCD"; version="1.0-11"; sha256="107i33z4q5w2828sm0pm8234kmp1v3a2w72lmhvi0rpnjhg0x120"; depends=[BB R_methodsS3]; }; @@ -3451,7 +3517,6 @@ in with self; { NPIstats = derive2 { name="NPIstats"; version="0.1.0"; sha256="0hbx2mzz1z2158c943dqfn0pq1aybj1xxy55mmvld4djr5zrlz9w"; depends=[dplyr]; }; NPMLEcmprsk = derive2 { name="NPMLEcmprsk"; version="3.0"; sha256="0nm88fsxgrfk0j0lmir57bhxy4p8ah503gpj6jdlvjqw862jigiq"; depends=[]; }; NPP = derive2 { name="NPP"; version="0.6.0"; sha256="1jyxnblr8ibzlwb78k98idf856m5gnaba3b53qz0pfgxf2k8wdhv"; depends=[]; }; - NPRED = derive2 { name="NPRED"; version="1.0.7"; sha256="0nkfgc9zy3gszmnay77yj7i0p8w1q8j1m9wb05hkrmhiacp4mbn4"; depends=[]; }; NPflow = derive2 { name="NPflow"; version="0.13.5"; sha256="14i5pfvpjj25frvxrfvch5a8ja8y4mnsk9h2ikcwh949br6mjq52"; depends=[ellipse fastcluster GGally ggplot2 pheatmap Rcpp RcppArmadillo reshape2 truncnorm]; }; NRejections = derive2 { name="NRejections"; version="1.2.0"; sha256="0lzj7kyn4s8l306a6xwkgkv1z4dlfsr61i902lvdxv4ln4m6a5kq"; depends=[doParallel foreach matrixcalc mvtnorm StepwiseTest]; }; NSAE = derive2 { name="NSAE"; version="0.4.0"; sha256="1pig0b2g6z1pc6is3nw7m88zwvwpg3pwvifvyc6p38kbin57m1pb"; depends=[cluster lattice MASS Matrix nlme numDeriv rlist SemiPar spgwr]; }; @@ -3461,7 +3526,7 @@ in with self; { NScluster = derive2 { name="NScluster"; version="1.3.6-1"; sha256="0qaf36pf5gd91ivy4ns5gppmrzxcha7ghyih4hcbnxs2291jck0x"; depends=[]; }; NTLKwIEx = derive2 { name="NTLKwIEx"; version="0.1.0"; sha256="1pdqcbiznil97s8m3yc3f251mii0w9qpa1ayw6bnx6bm9brgd4my"; depends=[dplyr ggplot2]; }; NTS = derive2 { name="NTS"; version="1.1.3"; sha256="0scj05h2r3sg34n0lmarbrgavz6q2n23gvs2v4w5q249q2cx6iis"; depends=[dlm MASS MSwM Rdpack tensor]; }; - NTSS = derive2 { name="NTSS"; version="0.1.2"; sha256="1i3y3psr17p8p7s799sdki3pndb82pydl2g3dcz18snynjpmd31j"; depends=[geoR GET ks spatstat spatstat_explore spatstat_geom spatstat_model spatstat_random]; }; + NTSS = derive2 { name="NTSS"; version="0.1.3"; sha256="18j7q5976ij0sn05j7s1k6rz7m8vi5lq7qx72cz9m8lj2f5l8apc"; depends=[geoR GET ks spatstat spatstat_explore spatstat_geom spatstat_model spatstat_random spatstat_univar]; }; NU_Learning = derive2 { name="NU.Learning"; version="1.5"; sha256="03g6hy9x9r9ydld14qpglxh09amm65hinq8i4wbnqhvg4b3wqbjx"; depends=[cluster lattice]; }; NUCOMBog = derive2 { name="NUCOMBog"; version="1.0.4.2"; sha256="0s6gm3adc9qdh94pxzgccbxx1f1lbgqyvd4xk37xp6f3b5hwljdz"; depends=[snowfall]; }; NUETON = derive2 { name="NUETON"; version="0.1.0"; sha256="0sqd2pcsy2c2s77aivi5s4mnb7xkzja9hnc4cgdgx4hdisdwvgdj"; depends=[]; }; @@ -3491,7 +3556,6 @@ in with self; { NetOrigin = derive2 { name="NetOrigin"; version="1.1-6"; sha256="0brjg6w79r6bkga9dpqph9l7k6wq5hvsjfhrwx7dnyr437f7z4hk"; depends=[colorspace corpcor dplyr Hmisc igraph mvtnorm plyr tibble]; }; NetPreProc = derive2 { name="NetPreProc"; version="1.2"; sha256="07drrgvgl3msbcxi113hinqss30lkzrv9hqkzwa41bpssfq8x68c"; depends=[graph]; }; NetRep = derive2 { name="NetRep"; version="1.2.7"; sha256="02ss45giv30pi31b5rysa36bn5c4fs5x58g4vb0arz9cnicznv97"; depends=[abind BH foreach RColorBrewer Rcpp RcppArmadillo RhpcBLASctl statmod]; }; - NetSci = derive2 { name="NetSci"; version="1.0.0"; sha256="1fliilk5z7lldkry5kijwab0k6ysqy87fcfrnwyywxkpxxrv1578"; depends=[binr cubature dplyr igraph magrittr Rfast wTO]; }; NetSimR = derive2 { name="NetSimR"; version="0.1.5"; sha256="1ipxr7wqlxa6qk5hhhbkr274v7f0hb1zjndcjgsk4gmv7cl7w21j"; depends=[DBI fitdistrplus future future_apply MASS Pareto plotly rmarkdown RMySQL RODBC RPostgreSQL RSQLite scales shiny shinybusy shinyjs shinyWidgets]; }; NetSwan = derive2 { name="NetSwan"; version="0.1"; sha256="1mwdy3ahagiifj2bd1ajrafvnxzi74a1x1d3i2laf1hqpz3fbgld"; depends=[igraph]; }; NetWeaver = derive2 { name="NetWeaver"; version="0.0.6"; sha256="058fi3vbp11mbg69n4yp1zf48akfdl6s2p0qpa0v6ngmk2zjk0bq"; depends=[]; }; @@ -3505,10 +3569,10 @@ in with self; { NetworkRiskMeasures = derive2 { name="NetworkRiskMeasures"; version="0.1.4"; sha256="1121ma43jxc4p9rw0sc8w32shf9xrmn5qd1xsqgzr8diymc49zhg"; depends=[dplyr expm ggplot2 Matrix]; }; NetworkToolbox = derive2 { name="NetworkToolbox"; version="1.4.2"; sha256="026gizms1xsmlpzgssgqi2y5lfhvvbqkwy5q3a0d4xvzbmyan3y7"; depends=[corrplot doParallel fdrtool foreach igraph IsingFit MASS pbapply ppcor psych pwr qgraph R_matlab]; }; NeuralNetTools = derive2 { name="NeuralNetTools"; version="1.5.3"; sha256="1q3q3vc1f0lglyx5ydv5nx6ywpvz50a9w7cql2j7cjvh4pd3pibs"; depends=[ggplot2 nnet reshape2 scales tidyr]; }; - NeuralSens = derive2 { name="NeuralSens"; version="1.1.2"; sha256="0inp0r22x4l2r2d69swm8631f07knfkf0xw5m191y4biy23jd1dv"; depends=[caret dplyr fastDummies ggbreak ggforce ggnewscale ggplot2 ggrepel gridExtra Hmisc magrittr NeuralNetTools reshape2 scales stringr]; }; + NeuralSens = derive2 { name="NeuralSens"; version="1.1.3"; sha256="0wd70qykzgsfz5pr05hjq5kcixz94787wm5qmh4nj7l8a5r01m76"; depends=[caret dplyr fastDummies ggbreak ggforce ggnewscale ggplot2 ggrepel gridExtra Hmisc magrittr NeuralNetTools reshape2 scales stringr]; }; NeuroDecodeR = derive2 { name="NeuroDecodeR"; version="0.2.0"; sha256="1jylaw35q8c72j7r9mk2a03r0k46csm9qav00dd1axxifc9y7wyf"; depends=[doSNOW dplyr e1071 forcats foreach ggplot2 gridExtra magrittr purrr R_matlab scales stringr tibble tictoc tidyr]; }; Newdistns = derive2 { name="Newdistns"; version="2.1"; sha256="1b5njkzj8b0wrvvfv904di0933k9d320gadmfm5zl6pzdp34bh1i"; depends=[AdequacyModel]; }; - NewmanOmics = derive2 { name="NewmanOmics"; version="1.0.10"; sha256="16lhs1wq4593yj5q1kw0rq085i4dja6x3pw5crnj4l4zib8gpdb1"; depends=[oompaBase]; }; + NewmanOmics = derive2 { name="NewmanOmics"; version="1.0.11"; sha256="0r9hyidg3xlnz8vgr2k3kazvh3pxpcay8iixp5bz1r6hzi8q1cc2"; depends=[oompaBase]; }; NiLeDAM = derive2 { name="NiLeDAM"; version="0.3"; sha256="1xqj33182fz6x633vs9iy3rxr7m13bqn1773fphs1sb8mvxwdvzq"; depends=[dplyr ggplot2 magrittr nleqslv rlang scales shiny shinyjs shinythemes thematic tidyr]; }; NicheBarcoding = derive2 { name="NicheBarcoding"; version="1.0"; sha256="16jkznc4624ww7vwid6f3m90wm2ds2c7zf1j1sw16dyrqmlyk9w3"; depends=[ape dismo e1071 maps pROC randomForest raster rJava spider vegan]; }; NightDay = derive2 { name="NightDay"; version="1.0.1.1"; sha256="1gwwxk428gkvci4dhfb3zikvidalpqkl0q2r6qpm58c12j14jk1h"; depends=[maps]; }; @@ -3524,20 +3588,19 @@ in with self; { NonNorMvtDist = derive2 { name="NonNorMvtDist"; version="1.0.2"; sha256="11xqdrx03q3anavyxpzb0hz6mcbdy252rzzjlpa2byfdlrfvn178"; depends=[cubature]; }; NonParRolCor = derive2 { name="NonParRolCor"; version="0.8.0"; sha256="1rh345vydbg31pbkagyb2xmsy8riam9zj7sc86m6dqvl19lglvg5"; depends=[colorspace doParallel foreach gtools pracma scales]; }; NonProbEst = derive2 { name="NonProbEst"; version="0.2.4"; sha256="1w2ihnwwdnxlnphyd26261lsxaknpi51c15rmn9m183djz9gsvdv"; depends=[caret e1071 glmnet Matrix sampling]; }; - NonlinearRDD = derive2 { name="NonlinearRDD"; version="0.0.4"; sha256="0jj8s8nvv5jcp74zlid0y5j4b1vl6cg4mxaw6m45wnaxansqfcq3"; depends=[copula lpcde lpdensity quantreg rddensity rdrobust Rfast]; }; NonlinearTSA = derive2 { name="NonlinearTSA"; version="0.5.0"; sha256="1z3fqw19kksadc31f1idrj37gzajrx91pprd07xdar7j6hddf4sn"; depends=[car minpack_lm tsDyn]; }; Nonpareil = derive2 { name="Nonpareil"; version="3.4.0"; sha256="130aags0pgry0d34mj1n4lavc8q43hls7c3jhmkr8k6vyg3ij372"; depends=[]; }; - NormData = derive2 { name="NormData"; version="1.0"; sha256="0is0i7fj1n1ibsxrl468znysnzn8k3ab6rlfq4bryqj0chgqk89k"; depends=[car doBy dplyr lmtest MASS openxlsx sandwich]; }; + NormData = derive2 { name="NormData"; version="1.1"; sha256="0v502sv5jpk644czq1d96qc4dw40j5hlvxy52ikjzhm89ri5gq9r"; depends=[car doBy dplyr lmtest MASS openxlsx sandwich]; }; NormExpression = derive2 { name="NormExpression"; version="0.1.1"; sha256="119bim7k33wng823rpsn4l2cgr9xns001gwjjg8pwf65yxdwwb37"; depends=[]; }; NormPsy = derive2 { name="NormPsy"; version="1.0.8"; sha256="13w4xjdjjg9mzmfaflc0gp306kazyvxshpj4vnl6gym3vpi9qax8"; depends=[lcmm]; }; NormalLaplace = derive2 { name="NormalLaplace"; version="0.3-1"; sha256="1j113pfi4fynn9jwma6j6habi1xj76sydjbymr3shsagv7jz6pfg"; depends=[DistributionUtils GeneralizedHyperbolic]; }; NormalityAssessment = derive2 { name="NormalityAssessment"; version="0.1.0"; sha256="0r9a51z614si3b45g01lfgapmgc4smjf2hylgy5kvq8w0yh0w5y6"; depends=[dplyr DT ggplot2 rio rmatio shiny shinyalert shinyBS stringi stringr]; }; NostalgiR = derive2 { name="NostalgiR"; version="1.0.2"; sha256="0rpvwi815sdhaxqpji1y6g0vy8mkn5k6wci0a4jf54pkywwkwrwp"; depends=[txtplot]; }; NovelDistns = derive2 { name="NovelDistns"; version="0.1.0"; sha256="073969vk2vg58fx5h0v92m3zb1rdzlvv809vyahy3gxrj9n13lmh"; depends=[AdequacyModel gsl rootSolve]; }; - NoviceDeveloperResources = derive2 { name="NoviceDeveloperResources"; version="1.1.0"; sha256="0m77n3xqwfy00mcl490cih4rp00wa7c8wyc6qanp0r11smzrahgf"; depends=[devtools]; }; - NoviceDeveloperResources2 = derive2 { name="NoviceDeveloperResources2"; version="1.0"; sha256="0k6x65mgbglbnjj99rimvv19jzfk1h5n3j7ignh3hnqlhi769qa1"; depends=[NoviceDeveloperResources packrat]; }; + NoviceDeveloperResources = derive2 { name="NoviceDeveloperResources"; version="1.2.0"; sha256="0im4ip5l2wfd4ypjrdm695368li9jh63l0d3vx83mnky59cnv815"; depends=[devtools]; }; + NoviceDeveloperResources2 = derive2 { name="NoviceDeveloperResources2"; version="1.1.0"; sha256="1a1vki21hc4xym9b5szahadzmidkkhzdz5iiafminniglpk90xhw"; depends=[NoviceDeveloperResources]; }; Nozzle_R1 = derive2 { name="Nozzle.R1"; version="1.1-1.1"; sha256="0fanf7cl8dlb8iqw8ww03dd5s6mrpr97m2c511clqkaavbd0yzkp"; depends=[]; }; - Numero = derive2 { name="Numero"; version="1.9.6"; sha256="1g66cdg6y07f2n02ngx54yj42ss4nashhd7avcfxl4ajjfh6wavc"; depends=[Rcpp]; }; + Numero = derive2 { name="Numero"; version="1.9.7"; sha256="04pf6x7qmgkfyj98c23maxcvlwwwfw6jas7l72xp0713lyndjl15"; depends=[Rcpp]; }; NutrienTrackeR = derive2 { name="NutrienTrackeR"; version="1.3.0"; sha256="0s7ax1aqvlph92y0pfs5ji2b4fjig2ig2zcl5vlffcilwm4ccrpp"; depends=[ggplot2 shiny]; }; OAIHarvester = derive2 { name="OAIHarvester"; version="0.3-4"; sha256="0b5v275w0c7y073fgwiy966djrw6p1zggzqlywa2fsdn2p0aq56w"; depends=[curl xml2]; }; OBASpatial = derive2 { name="OBASpatial"; version="1.9"; sha256="13jx5f5piii9cys7xyhfwilyg87zsi632fscy8902mlhbgg7abkp"; depends=[cubature HDInterval invgamma LaplacesDemon modeest mvtnorm truncdist]; }; @@ -3545,9 +3608,8 @@ in with self; { OBL = derive2 { name="OBL"; version="0.2.1"; sha256="06icw1dnmavgaf51fs2nfi6582cpjrnlii1j9s62nwnwfnqw00v3"; depends=[dplyr forcats foreach forecast ggplot2 tibble]; }; OBMbpkg = derive2 { name="OBMbpkg"; version="1.0.0"; sha256="01wch8wwij3fd0jambk0hpkhlnp4ryrq8qnnr2w1iad9zssjyii5"; depends=[]; }; OBRE = derive2 { name="OBRE"; version="0.2-0"; sha256="1x1s46yffjr140mwx8amnh02k6g8x2gz5hz7lypiwxh0v7a8bm8w"; depends=[pracma]; }; - OBsMD = derive2 { name="OBsMD"; version="11.1"; sha256="0gxx3ja4ii5ql1ss43g23jrbwzg3193wchqmrdm0iq7g33mmd16y"; depends=[]; }; OCA = derive2 { name="OCA"; version="0.5"; sha256="19bayggqkzzpvn7ax8m8xgvz27a03iyybsxjz2vphf03dwsr8c5h"; depends=[mathjaxr]; }; - OCNet = derive2 { name="OCNet"; version="1.2.1"; sha256="1jd6389g0md8rch21j5sn183mbvwmqyak8pw5p8jxxyp1x4vj87s"; depends=[adespatial fields igraph Rcpp rgl spam spdep terra]; }; + OCNet = derive2 { name="OCNet"; version="1.2.2"; sha256="1ryb5jbz1dd4b9v45za6li1szdz8n9mmf3n3wx4ivqmcrnp2zqdh"; depends=[adespatial fields igraph Rcpp rgl spam spdep terra]; }; OCSdata = derive2 { name="OCSdata"; version="1.0.2"; sha256="0119c2i9k63mbz40lbbf7x59nf4yyhrmaynn0m0sh1h3jjbsiazc"; depends=[httr purrr usethis]; }; ODB = derive2 { name="ODB"; version="1.2.1"; sha256="0frkbl99ilpmppm4fm97lbkqhmjgcwlz9j5vh5nzzcsxrh8qwicn"; depends=[DBI RJDBC]; }; ODEnetwork = derive2 { name="ODEnetwork"; version="1.3.2"; sha256="0wicp0xxqq3jl0kjhc26iqpk8rwa9nv2aiwf18pkgnqxbyw6lgnp"; depends=[checkmate deSolve]; }; @@ -3561,7 +3623,7 @@ in with self; { OGI = derive2 { name="OGI"; version="1.0.0"; sha256="0qw55jamkvdf3vfa5c0ygbymbs4d9q15dihiqz691hdfnyjvc2mk"; depends=[lpSolve]; }; OHCSpackage = derive2 { name="OHCSpackage"; version="0.1.5"; sha256="0dr2yxz9amqq9mpl8skhdvs7w01zc4y3sw4wqs0iwj1pj9jb96fz"; depends=[dplyr openxlsx readr tibble]; }; OHPL = derive2 { name="OHPL"; version="1.4"; sha256="0svim112khdymdj1bsj8vri6r0zph5312y148mlh5h98rah40i08"; depends=[glmnet mvtnorm pls]; }; - OLCPM = derive2 { name="OLCPM"; version="0.1.1"; sha256="1iq0avlrxpj9qfi90im1k845grqrr512ysdi5fpfy0s8zjalsxnh"; depends=[LaplacesDemon RSpectra]; }; + OLCPM = derive2 { name="OLCPM"; version="0.1.2"; sha256="0w60w1qhq8sbcaqk56kf4cgn51fm8zjmxdm42imn5c05m06pc8k0"; depends=[LaplacesDemon RSpectra]; }; OLStrajr = derive2 { name="OLStrajr"; version="0.1.0"; sha256="1ln2as15aay4hzdm82yc024dlv7wdip9l5dryrdhkmmhjy026gia"; depends=[boot broom ggplot2 purrr tidyr tidyselect]; }; ONEST = derive2 { name="ONEST"; version="0.1.0"; sha256="07mfykpkcgcqafw1w3qr9x83zpy2p0q7v1zkgwpd69g79j0r3yap"; depends=[]; }; OOBCurve = derive2 { name="OOBCurve"; version="0.3"; sha256="1i7prybs3b60ipl34zrq6mcr6w9kc1d44b14mxcd752k42k6xs2r"; depends=[mlr randomForest ranger]; }; @@ -3576,7 +3638,7 @@ in with self; { ORFID = derive2 { name="ORFID"; version="1.0.2"; sha256="11g4l45x3jwyffamr2qd0h7y15kyynqqwxh1mp1mnv0lchmdyr89"; depends=[dplyr ggplot2 magrittr openxlsx readr rlang stringr tidyr]; }; ORIClust = derive2 { name="ORIClust"; version="1.0-2"; sha256="036jbfq4klzlppybvcj8wjchcyqmmxwvvr3rn9436cz4zm2yjy4a"; depends=[]; }; ORION = derive2 { name="ORION"; version="1.0.3"; sha256="0zzlvx1yd3hy8dy7nbmkj7d2k6609ys91s894qcgx5n7jirqviy3"; depends=[doParallel e1071 foreach igraph knitr randomForest rmarkdown TunePareto]; }; - ORKM = derive2 { name="ORKM"; version="0.7.0.0"; sha256="1sgxbydxl3gv34fnzc8615hziv6a3qmq8vnmys0lwxahxvix11j9"; depends=[MASS Matrix]; }; + ORKM = derive2 { name="ORKM"; version="0.8.0.0"; sha256="132459zd83c3www2gijcb97f5c765p66y459irlv63ny21hwpnsp"; depends=[MASS Matrix]; }; ORTSC = derive2 { name="ORTSC"; version="1.0.0"; sha256="0byja1gi44ymn68cfai8apcimlxmnflqr1pj8k4y7l8lqd3fyz60"; depends=[googleAuthR googleCloudVisionR]; }; OSCV = derive2 { name="OSCV"; version="1.0"; sha256="17wrfak6b6m2l3iqbhdwcfh0rlqb14rkvrbari7v46gya9v7hq20"; depends=[mc2d]; }; OSDR = derive2 { name="OSDR"; version="1.1.4"; sha256="0yf9l0fkqf9adanl8182nyislj2s2xvsnf2xp5y7pdj3af2k4m7w"; depends=[]; }; @@ -3599,7 +3661,7 @@ in with self; { Observation = derive2 { name="Observation"; version="0.3.0"; sha256="1z9ldp050f7jy76s8yk509nwjx1ymvk5k9d19i67brd7xcawxnr3"; depends=[svDialogs]; }; OceanView = derive2 { name="OceanView"; version="1.0.7"; sha256="0s615mrbwamd85h1q8rg5mciwq0hcjzl5rqjaq578nz5ikr3px9a"; depends=[plot3D plot3Drgl rgl shape]; }; OddsPlotty = derive2 { name="OddsPlotty"; version="1.0.2"; sha256="0adgbrni7yrarybh0djmq68hifwqzn2rn9mfqgwqma1d7mg3ai93"; depends=[caret e1071 ggplot2 ggthemes magrittr mlbench rmarkdown tibble tidymodels]; }; - OenoKPM = derive2 { name="OenoKPM"; version="2.2.1"; sha256="0ppp8ijzgv6qvgjl7cnnp1zkcqnyx4h6gyk1f1qskr9izbz84sv6"; depends=[ggplot2 minpack_lm openxlsx]; }; + OenoKPM = derive2 { name="OenoKPM"; version="2.4.1"; sha256="1qqfnq0zzmnjjb9rr6qd2l08rn5plkg4xsbrdk7jv1alfnq1b938"; depends=[ggplot2 ggpubr gridExtra minpack_lm openxlsx]; }; Ohit = derive2 { name="Ohit"; version="1.0.0"; sha256="132d4drc2phw9ppxnczb1ycdg3dv085k8p6bcaj3v866j0hfxjgb"; depends=[]; }; OkNNE = derive2 { name="OkNNE"; version="1.0.1"; sha256="10kkg6n6fsqm1kir1ay96br1m8adykarmp57bnw900fiblqqa2i0"; depends=[FNN]; }; OlinkAnalyze = derive2 { name="OlinkAnalyze"; version="3.7.0"; sha256="0rj57ipm2lk11ysscgqaa38hgysyxr9nb5zvp17kxf5cla17dskc"; depends=[broom car dplyr emmeans forcats generics ggplot2 ggpubr ggrepel lme4 lmerTest magrittr readxl rlang rstatix stringr tibble tidyr tidyselect zip]; }; @@ -3616,25 +3678,27 @@ in with self; { OnboardClient = derive2 { name="OnboardClient"; version="1.0.0"; sha256="15ymf163a80s4yvi5z884irvkb1ivnxpr505z96s23hs8ibhk2bh"; depends=[data_table dplyr httr jsonlite lubridate plyr rrapply rstudioapi stringr tibble tidyr tidyselect]; }; OncoBayes2 = derive2 { name="OncoBayes2"; version="0.8-9"; sha256="06k0lbriyx6b1nlvpyjhf5g8dp8wa37wi1pmlpfqq7ryivp39v38"; depends=[abind assertthat bayesplot BH checkmate dplyr Formula ggplot2 matrixStats posterior Rcpp RcppEigen RcppParallel rlang rstan rstantools scales StanHeaders tibble tidyr tidyselect]; }; OncoSubtype = derive2 { name="OncoSubtype"; version="1.0.0"; sha256="12d32i8q4j0hlkxlk6s8r5ycib6lx5jdsp8g404zmjrsd96aadr2"; depends=[caret dplyr e1071 limma pheatmap randomForest Rdpack rlang SummarizedExperiment tibble]; }; + Oncofilterfast = derive2 { name="Oncofilterfast"; version="1.0.0"; sha256="1ns39r8ljzykpxy5cy4wvgsgiwqpdrida26641av7z3arr1f4kd1"; depends=[survival survminer]; }; Oncotree = derive2 { name="Oncotree"; version="0.3.5"; sha256="1c40xggz3ldgma73ik0m10asamd9kns4i30w3zgw4hvpyzalbvm4"; depends=[boot]; }; One4All = derive2 { name="One4All"; version="0.4"; sha256="1f0gymlpdyz9dm71mj99cyp58c1nwxr8d4g9c976mf5mimz2rhyn"; depends=[aws_s3 ckanr data_table digest dplyr httr jsonlite lexicon mongolite openxlsx readr readxl rlang shiny tibble validate]; }; OneArm2stage = derive2 { name="OneArm2stage"; version="1.2.1"; sha256="040yv2bl6s7b1bgma7z1hgrsj8iynzayjc77ncp401nd1ng5wmw5"; depends=[flexsurv IPDfromKM survival]; }; OneArmTTE = derive2 { name="OneArmTTE"; version="1.0"; sha256="186386pjjvlfq38950n1sdx0wq31q8ggjlqlrn07v68bcqjl70y6"; depends=[dplyr survival tibble tidyr]; }; OneR = derive2 { name="OneR"; version="2.2"; sha256="1k7rzhcwq5b2yi4zfsc1r0yb6w65gxj9835d2a1dclallja3zav2"; depends=[]; }; OneSampleLogRankTest = derive2 { name="OneSampleLogRankTest"; version="0.9.2"; sha256="1z09nmwp4v4rhr5aqx7k4dg9xvp9nm4djr2kbkivd7hph4fks0qs"; depends=[dplyr ggplot2 magrittr rlang survival survminer]; }; - OneSampleMR = derive2 { name="OneSampleMR"; version="0.1.3"; sha256="18d467bhym9mp41n65rp0wg75f40szc7w5804p3hh9xqw7c3q2qq"; depends=[Formula gmm ivreg lmtest msm]; }; + OneSampleMR = derive2 { name="OneSampleMR"; version="0.1.4"; sha256="11wcrmhibr02wbkdw77imcjancfdfzcqkz6wfjiiydx3hsksymck"; depends=[ellipsis Formula gmm ivreg lmtest msm]; }; OneStep = derive2 { name="OneStep"; version="0.9.3"; sha256="1mnmji4pb2qbg0amgy5kkgyn8xg8ny0n7fi8xqr9pgi5zx5c63r4"; depends=[extraDistr fitdistrplus numDeriv]; }; OneTwoSamples = derive2 { name="OneTwoSamples"; version="1.1-0"; sha256="0qa5v3c1f5mckvgmw8zbxqkk1q8k8dig1xg9k8pfyvfxqjard1ny"; depends=[]; }; OnomasticDiversity = derive2 { name="OnomasticDiversity"; version="0.1"; sha256="11v8zk4xvy7a3mfglj7d96d03nsnc2i23ms73v9dci8wdnwnskp1"; depends=[sqldf]; }; + OpEnHiMR = derive2 { name="OpEnHiMR"; version="0.1.1"; sha256="0wgjihdfjvsf3p97ll496ixwv2xzlgsr138pzgalw5hq0p1kmld6"; depends=[Biostrings caret devtools dplyr e1071 entropy ftrCOOL gbm party randomForest RCurl seqinr splitstackshape stringr tidyverse]; }; OpenCL = derive2 { name="OpenCL"; version="0.2-10"; sha256="0nkf1rfplzpwf722xiswvvjqla0aysaga5g6r1whx6ksy21xbhpi"; depends=[]; }; OpenImageR = derive2 { name="OpenImageR"; version="1.3.0"; sha256="0j15kwhjazr35yqs9lhw0pfqmrd9rm75gs160dn3xcyc3nw2is56"; depends=[jpeg lifecycle png R6 Rcpp RcppArmadillo shiny tiff]; }; - OpenLand = derive2 { name="OpenLand"; version="1.0.2"; sha256="02d1dflcbjvm9hgvsm5gpc3s0n0njf4w3224yqk9nc0i49nw01fi"; depends=[circlize dplyr ggplot2 gridExtra networkD3 raster tidyr]; }; + OpenLand = derive2 { name="OpenLand"; version="1.0.3"; sha256="0qm08j12yrh3kyz3azpgp3w9pwvf4i8ymwisks8iqz05k2kw1r36"; depends=[circlize dplyr ggplot2 gridExtra networkD3 raster tidyr]; }; OpenML = derive2 { name="OpenML"; version="1.12"; sha256="0ij4mnbfkckidv9f414fclyhrbbkgmpz5zsjiqa3zlckr3pfaxg7"; depends=[backports BBmisc checkmate curl data_table digest httr jsonlite memoise stringi XML]; }; OpenMindat = derive2 { name="OpenMindat"; version="1.0.0"; sha256="1y9f358yn1d2xfqcgmmhcnyxr29fd2frh6ka70pzk63szswszs50"; depends=[httr jsonlite readxl stringi stringr usethis]; }; OpenMx = derive2 { name="OpenMx"; version="2.21.11"; sha256="1k3i82higil43w4pryg1ghpswa8vxmc28dcv60gvkmmjrnwp098m"; depends=[BH digest lifecycle MASS Matrix Rcpp RcppEigen RcppParallel rpf StanHeaders]; }; OpenRepGrid = derive2 { name="OpenRepGrid"; version="0.1.14"; sha256="1gy06cyjb50673jb9548c9v37im4hsm245r7rwhx280q9fsn17ws"; depends=[abind colorspace crayon dplyr igraph openxlsx plyr psych pvclust rgl scales stringr tidyr XML]; }; OpenRepGrid_ic = derive2 { name="OpenRepGrid.ic"; version="0.6.2"; sha256="1v8sqlid97xnp0nddn4yr6im8zah1pclirvmz1n7qmc91656plx6"; depends=[dplyr DT formattable igraph magrittr openxlsx RColorBrewer reshape2 rintrojs scales shiny shinyBS shinycssloaders shinydashboard shinydashboardPlus shinyFeedback shinyjs shinythemes shinyWidgets stringr tidyr tidyverse withr]; }; - OpenSpecy = derive2 { name="OpenSpecy"; version="1.0.8"; sha256="0dz7hfp4447xgxsi92han8jwiy373vr5nyv3hlda26j9ydyf2jqf"; depends=[caTools data_table digest glmnet hyperSpec jsonlite mmand osfr plotly shiny signal yaml]; }; + OpenSpecy = derive2 { name="OpenSpecy"; version="1.1.0"; sha256="05vzc4vswdd1k4b0gs01rhf8lp7lspygw1m6rw9d49l5ag7hq9if"; depends=[caTools data_table digest glmnet hyperSpec jpeg jsonlite mmand osfr plotly shiny signal yaml]; }; OpenStreetMap = derive2 { name="OpenStreetMap"; version="0.4.0"; sha256="0iq3y3331rjppc8nfx9krrrfybyn1spwfp15hf3vz8mnmcg86dkf"; depends=[ggplot2 raster rJava sp]; }; OpenTreeChronograms = derive2 { name="OpenTreeChronograms"; version="2022.1.28"; sha256="0si5aaami2x705fmzp9357h1nwhdm3sb829cbvf7zfyicqyaihkg"; depends=[ape geiger knitcitations paleotree plyr rotl stringr taxize treebase usethis]; }; Opportunistic = derive2 { name="Opportunistic"; version="1.2"; sha256="0kaj11ziij1v65l972x4kbr7vzkx4dwa27ymabiip4dg57a976wr"; depends=[]; }; @@ -3643,7 +3707,7 @@ in with self; { OptGS = derive2 { name="OptGS"; version="1.2"; sha256="0rpnn38w3a15agv0hkr77w6jpdb75ahnxq487vy35yxv9mvh75nn"; depends=[]; }; OptHedging = derive2 { name="OptHedging"; version="1.0"; sha256="0g7qaf5abvbcqv2h1dciwn3gwpz084ryqjjk0yabdm4ym0y38ddm"; depends=[]; }; OptHoldoutSize = derive2 { name="OptHoldoutSize"; version="0.1.0.0"; sha256="0ab0vvbg1nmpbbhq5a5nkwv7ap0fq4542l5da7g8qlwc23h6sfs5"; depends=[matrixStats mle_tools mnormt mvtnorm ranger]; }; - OptM = derive2 { name="OptM"; version="0.1.6"; sha256="1x3df5qmbs920rgxpc32grwran49nxpnw9swrba9877c0ixg2dww"; depends=[boot SiZer]; }; + OptM = derive2 { name="OptM"; version="0.1.8"; sha256="00xjzpfnri2k0p04cv98vwwymv16pbw79znklg1k3xc4rxg8wd25"; depends=[SiZer]; }; OptSig = derive2 { name="OptSig"; version="2.2"; sha256="0fdszrblayi2hlmkgvwqxw1fh5nh2jad6sxlc788jrzjrd8nkldj"; depends=[pwr]; }; OptiSembleForecasting = derive2 { name="OptiSembleForecasting"; version="0.1.0"; sha256="0j1xjh59iyb99p73wjvqr8yrsj6yplsl2rrx50bds9ksjbq1qmym"; depends=[caretForecast dplyr factoextra FactoMineR forecast keras kknn MCS metaheuristicOpt Metrics neuralnet readxl tensorflow tibble tsutils]; }; OptimModel = derive2 { name="OptimModel"; version="2.0-1"; sha256="1c53jryrvzjhkgjppvf8kx7fvfss2x52v6wx90sfw57710dl9wvx"; depends=[Matrix]; }; @@ -3667,19 +3731,21 @@ in with self; { OscillatorGenerator = derive2 { name="OscillatorGenerator"; version="0.1.0"; sha256="0zqw8l955msxkdviw5vd493749zwc22qby9mfmyqnqqmq0pyjw4w"; depends=[]; }; OssaNMA = derive2 { name="OssaNMA"; version="0.1.2"; sha256="04y36yi1qvxazf0s563d41g91x2190r1c5phkgkfqdcml94dmnln"; depends=[DEoptimR NlcOptim]; }; Ostats = derive2 { name="Ostats"; version="0.2.0"; sha256="0d2qk76issb2k5f2ghfvpq0k8ra7d7nj9hp4ja1s0817zwr0g3zz"; depends=[circular ggplot2 gridExtra hypervolume MASS matrixStats sfsmisc viridis]; }; + OutliersLearn = derive2 { name="OutliersLearn"; version="1.0.0"; sha256="1qjgi3m8727x40dfx9r36m9mg0jwa99qfwxv5xz29k2mwqknhl47"; depends=[]; }; OutliersO3 = derive2 { name="OutliersO3"; version="0.6.3"; sha256="165v572w9bnvay9f0xyxzbhgj1i86ndia4rzqy98i48dfdbdb990"; depends=[cellWise dplyr FastPCS forcats GGally ggplot2 HDoutliers memisc rlist robustbase robustX tidyr]; }; OwenQ = derive2 { name="OwenQ"; version="1.0.7"; sha256="0az36s6vrnfa93w12549v9zf6q9xg0a4kvrq5hnkaqxl314zaz1y"; depends=[BH Rcpp RcppEigen RcppNumerical]; }; OxyBS = derive2 { name="OxyBS"; version="1.5"; sha256="11l3gm0jvw993jb13f6kpv77m6z0d1jswscma2v28qzkw053r3dc"; depends=[]; }; PAC = derive2 { name="PAC"; version="1.1.4"; sha256="0h7381mr3jgzl7fi6v7amgmkf5agpkgy068c6ysgh3adlwsh6gs6"; depends=[dplyr ggplot2 ggrepel igraph infotheo parmigene Rcpp Rtsne]; }; PACLasso = derive2 { name="PACLasso"; version="1.0.0"; sha256="1qzzymhfsjy8mk0r0xpd5h4wrx4wk8gq3vi6fnawkq5xkrg26rld"; depends=[lars limSolve MASS penalized quadprog]; }; - PACVr = derive2 { name="PACVr"; version="1.0.8"; sha256="11izhw8j9axjfa7g3kgmm9gxkmh6nsv5asph3lmwffnfrqmc5m1y"; depends=[Biostrings dplyr GenomicAlignments GenomicRanges IRanges logger RCircos read_gb tidyr]; }; - PAGFL = derive2 { name="PAGFL"; version="1.0.1"; sha256="0qkpkls49ssrr6yib9j1az5yi8amd6hg99bap6pcv99l088078l6"; depends=[pbapply Rcpp RcppArmadillo]; }; + PACVr = derive2 { name="PACVr"; version="1.0.11"; sha256="0wj32rghf040539z6lld4zspyalz3c4ag1syr940arvilvyv5wav"; depends=[Biostrings dplyr GenomicAlignments GenomicRanges IRanges logger R6 RCircos read_gb tidyr]; }; + PAFit = derive2 { name="PAFit"; version="1.2.10"; sha256="10p2q90jbjyzbvn8kgx1i8if144gq2zylqh8h3x4sg2ajqbcv8kg"; depends=[ggplot2 igraph knitr magicaxis mapproj MASS network networkDynamic plyr RColorBrewer Rcpp VGAM]; }; + PAGFL = derive2 { name="PAGFL"; version="1.1.0"; sha256="1dh3hdrr5dhs7azvcn1r6lgyy2sqkr0nfzkcf2sh0vm6zxz85ssy"; depends=[ggplot2 lifecycle Rcpp RcppArmadillo RcppParallel]; }; PAGWAS = derive2 { name="PAGWAS"; version="2.0"; sha256="0bz47ivd32kx1amgqllqbxyyvj773q7wasgk924hmibabiixa8nx"; depends=[foreach lars mnormt]; }; PAICE = derive2 { name="PAICE"; version="1.0.1"; sha256="1qnyg5p62xryifjnbc2z5yxy4s5fszxf713cgaisds96wjqvzx8a"; depends=[]; }; PAMhm = derive2 { name="PAMhm"; version="0.1.2"; sha256="0k0n3ni0ypcizri39v76x1vv7hlxlmbpfi7w81yxy9inz7zz4zfw"; depends=[cluster heatmapFlex plyr R_utils RColorBrewer readmoRe readxl robustHD]; }; - PAMmisc = derive2 { name="PAMmisc"; version="1.11.6"; sha256="0x0pirzcxjkx5p3mqf3xn3a7ng5dah3z9pcrlkaj7d44y08kygj3"; depends=[dplyr geosphere ggplot2 hoardr httr lubridate magrittr ncdf4 PamBinaries purrr RcppRoll rerddap rjson RSQLite scales seewave suncalc tuneR xml2]; }; + PAMmisc = derive2 { name="PAMmisc"; version="1.12.1"; sha256="0xv4bm1gzvhybgaww24nikwcbn8wq8299gbr1n831gscnzablzp3"; depends=[dplyr fftw geosphere ggplot2 httr lubridate magrittr ncdf4 PamBinaries purrr RcppRoll rerddap rjson RSQLite scales seewave signal suncalc tuneR xml2]; }; PAMpal = derive2 { name="PAMpal"; version="1.0.0"; sha256="0mr4c7ckw05mh5lmr0qhpas98122yn257gip6w2hwrcyziy5sc4v"; depends=[data_table dplyr gam geosphere ggplot2 knitr lubridate manipulate PamBinaries PAMmisc purrr reticulate rlang RSQLite seewave signal stringr tidyr tuneR xml2]; }; - PAMscapes = derive2 { name="PAMscapes"; version="0.5.3"; sha256="1r3p352mb0zqgqs6xp717j7in8s883l6rq82cyc8mi63a6cp99dp"; depends=[data_table dplyr geosphere ggplot2 hoardr httr lubridate magrittr ncdf4 PAMmisc purrr readr rlang scales sf tdigest tidyr]; }; + PAMscapes = derive2 { name="PAMscapes"; version="0.5.8"; sha256="094084w6zamchzh6fwcgy839brq28vqkji2p335bpni9dfkz3cd5"; depends=[data_table dplyr geosphere ggplot2 httr lubridate magrittr ncdf4 PAMmisc purrr readr rlang scales sf tdigest tidyr]; }; PANACEA = derive2 { name="PANACEA"; version="1.0.1"; sha256="0pq5kq0i87yrdfs6id2lc6gg4dqsa07fsas13yc8jw6bd9lcf6rh"; depends=[DBI igraph org_Hs_eg_db reshape2]; }; PANPRSnext = derive2 { name="PANPRSnext"; version="1.2.0"; sha256="1s9kv58af7hj65qxcnrsfjrh8xfqhm5m4kpg279li5b4g4cpnqx9"; depends=[gtools Rcpp RcppArmadillo]; }; PAS = derive2 { name="PAS"; version="1.2.5"; sha256="175p3bnpnhknfsc29hri0l2ipz1x6qcxs2bq7awns8lccam466r2"; depends=[glmnet]; }; @@ -3702,6 +3768,7 @@ in with self; { PCADSC = derive2 { name="PCADSC"; version="0.8.0"; sha256="0pwkmmnsw3c6ch2k5wdc8ig71994pdp79v3a5aa9n9aq55a8c2ir"; depends=[ggplot2 Matrix pander reshape2]; }; PCAmatchR = derive2 { name="PCAmatchR"; version="0.3.3"; sha256="0ycplivjiz2w3wiqnqga0ywwdbd9mxqzm92k3bjva8009jxxijax"; depends=[]; }; PCAmixdata = derive2 { name="PCAmixdata"; version="3.1"; sha256="0flrsnbchwk06dmkg3vqykp9n4pqs265szn1r10navp8ki3rrmvh"; depends=[]; }; + PCBS = derive2 { name="PCBS"; version="0.1.0"; sha256="1sy2r55dard7hlha4k2b2i41y21a3nk786nzrbzicyvv6v093cd2"; depends=[data_table dplyr ggplot2 ggrepel tibble]; }; PCDimension = derive2 { name="PCDimension"; version="1.1.13"; sha256="0mpf7m4daqaip18yfsyanrmbjq4ib9fw1b65ajdazicm400bw6gb"; depends=[changepoint ClassDiscovery cpm kernlab oompaBase]; }; PCFAM = derive2 { name="PCFAM"; version="1.0"; sha256="196jzv0f6j60zkyagm9n98339ipn8mrhmhl3q4g053z8f6mm9zmv"; depends=[]; }; PCGII = derive2 { name="PCGII"; version="1.1.2"; sha256="0bh37354qk2hj90f9l2908466bvwzjmxr70nyivhqkx2ffp5j42n"; depends=[corpcor dplyr glmnet igraph Matrix]; }; @@ -3718,7 +3785,7 @@ in with self; { PCS = derive2 { name="PCS"; version="1.3"; sha256="0v9vczc9hml6mzxglh106a9f5gy3x5m471lkzaw3ps8z76sgrpyr"; depends=[multtest statmod]; }; PCSinR = derive2 { name="PCSinR"; version="0.1.0"; sha256="1z8yjryw3c43vc6fxcwiindmyq6r63pc1zr3aybwmys6mv697bb4"; depends=[]; }; PCovR = derive2 { name="PCovR"; version="2.7.2"; sha256="0fzs071wnrf84fah0nzzavjiqvch031xjsmlj6nj7cjrmy7p7mv1"; depends=[GPArotation MASS Matrix ThreeWay]; }; - PDE = derive2 { name="PDE"; version="1.4.8"; sha256="0ryhy3nayy8zagqjnr8hng7k7q2z74x6n1mqavgdm6d5nx0l7k3c"; depends=[tcltk2]; }; + PDE = derive2 { name="PDE"; version="1.4.10"; sha256="0qzy70m8i64616lakhjil0jid3lfliqsyfg6w3hsg9662pl0wbf3"; depends=[tcltk2]; }; PDFEstimator = derive2 { name="PDFEstimator"; version="4.5"; sha256="1h64scfy7db8p8gyczrzhscfssk1cbzhr41z8jvs0n1d1xa2f982"; depends=[MultiRNG plot3D]; }; PDM = derive2 { name="PDM"; version="0.1"; sha256="1pbdy13ji9c6krgh2r1qgrzmf4hdmrdzylsr71n3hh5jq4n9xg8x"; depends=[jpeg]; }; PDMIF = derive2 { name="PDMIF"; version="0.1.0"; sha256="0mlc31f4z0k5xk1fil0hx5dcbm7afia74kxb7xmnx4jcblidxnd2"; depends=[diagonals ncvreg quantreg]; }; @@ -3726,7 +3793,6 @@ in with self; { PDQutils = derive2 { name="PDQutils"; version="0.1.6"; sha256="0mmfi0ifwbkjm0274sddpwkj27cvdkwngnka8vdmfm4b2nn7vgsp"; depends=[moments orthopolynom]; }; PDSCE = derive2 { name="PDSCE"; version="1.2.1"; sha256="1amy4rnvlcfvpma8pqd6wli1j0pjjk49i1qywa43lzgdwgd5dl9v"; depends=[]; }; PDShiny = derive2 { name="PDShiny"; version="0.1.0"; sha256="0s09sywvy83dj06rkxzyi06wfymwnfpgf3lpgjbb8ps8q3byd4vs"; depends=[shiny]; }; - PDXpower = derive2 { name="PDXpower"; version="1.0.0"; sha256="144phmshjmm891f8sd8aagm7ql6hwb1i24mbpcfgak61q7anw2xy"; depends=[frailtypack ggplot2 ggpubr nlme survival]; }; PDtoolkit = derive2 { name="PDtoolkit"; version="1.2.0"; sha256="0g4s5fw0m128kq9dhaa4j76b2islhbbj9a6dqbmcmvlqla0bqm3k"; depends=[dplyr monobin rpart]; }; PEACH = derive2 { name="PEACH"; version="0.1.1"; sha256="0ciq2cci35rv39pgpp7i30jxlmr85726kh07ww22ryq3bm04ylg8"; depends=[MASS metap mnormt]; }; PEGroupTesting = derive2 { name="PEGroupTesting"; version="1.0"; sha256="1z863ard0cc2g8ibxnmxhiqhvs53r6b8gpnavnfchm9432ifcbwi"; depends=[]; }; @@ -3742,9 +3808,9 @@ in with self; { PGEE = derive2 { name="PGEE"; version="1.5"; sha256="1qcxbqnbpplnfjy83nm9fj9y4abzgbxnsggzx7ix3vb9qs18cdwh"; depends=[MASS mvtnorm]; }; PGM2 = derive2 { name="PGM2"; version="1.0-1"; sha256="03282pcq7gw47awc2mxjsbz6w3zpqjhqd7fzg8la4p00cd0vvmr4"; depends=[]; }; PGRdup = derive2 { name="PGRdup"; version="0.2.3.9"; sha256="0z2nnjlaazrmfnjmwhsmhp8h3ifgykmsy6znqvcl77v9565libz9"; depends=[data_table ggplot2 gridExtra igraph stringdist stringi]; }; - PH1XBAR = derive2 { name="PH1XBAR"; version="0.11.1"; sha256="08dvcbzvb80zcfxlp6xdps2wg5wmjq9p14ybi1wy9fk82b6gqp0d"; depends=[forecast mvtnorm pracma]; }; + PH1XBAR = derive2 { name="PH1XBAR"; version="0.11.2"; sha256="0ikh8jrf2yq9f444wa5fkiwri5xfc9r19f7862p3s11xmax8dycn"; depends=[forecast mvtnorm pracma]; }; PHENIX = derive2 { name="PHENIX"; version="1.3.1"; sha256="1gd9ycrwawi81al4f5v559km1112giwqnwvvk8ynj4kdb5bqpyq4"; depends=[ppcor SuppDists]; }; - PHENTHAUproc = derive2 { name="PHENTHAUproc"; version="1.0.1"; sha256="1kwaz54y1k8paca91pipg9vjy6yyqddz3h7ym99dfggq14di3q6b"; depends=[lubridate rlang terra]; }; + PHENTHAUproc = derive2 { name="PHENTHAUproc"; version="1.1"; sha256="1bhd147mhv1xj4q6yqz92n8vi6nji093y78pi1jkav1plwx2qf3c"; depends=[lubridate rlang terra]; }; PHEindicatormethods = derive2 { name="PHEindicatormethods"; version="2.0.2"; sha256="0gjlq8vnfgc5hlscy64ypx08vafwvc2xbk971nznby4v2fkkm1h3"; depends=[broom dplyr purrr rlang tibble tidyr tidyselect]; }; PHInfiniteEstimates = derive2 { name="PHInfiniteEstimates"; version="2.9.5"; sha256="1j00bb0jk912bkv6yhwnx1f2nr2bw72z9c5y4xby1mphljz059b7"; depends=[coxphf lpSolve nph Rdpack survival]; }; PHSMM = derive2 { name="PHSMM"; version="1.0"; sha256="1phfdzhfdhyry11plfd8a2lcn3rg02m84brw7fp2lg3hsxjg5ch7"; depends=[Rcpp RcppArmadillo]; }; @@ -3753,10 +3819,10 @@ in with self; { PHeval = derive2 { name="PHeval"; version="0.5.4"; sha256="06fy5dm4mnp29f01163rw1d1hyl7rlcp4pfw18s87ckpr931qyma"; depends=[survival]; }; PICBayes = derive2 { name="PICBayes"; version="1.0"; sha256="1js6zrnyc8v345cds3pypb2g9dd3vvj3bjq159qc113m9ll2xk0b"; depends=[coda MCMCpack survival]; }; PINMA = derive2 { name="PINMA"; version="1.1-2"; sha256="18sm4j2srwkf1yp487d0hbmmy8max5h9966mq43pf9f2fwa0j4mc"; depends=[MASS metafor]; }; - PINSPlus = derive2 { name="PINSPlus"; version="2.0.6"; sha256="0mws1064kwfm3csdzpfn4g2pwjasdmx9nz5x28znxv8hwrlgm2zw"; depends=[cluster doParallel entropy FNN foreach impute irlba matrixStats mclust Rcpp RcppArmadillo RcppParallel]; }; + PINSPlus = derive2 { name="PINSPlus"; version="2.0.7"; sha256="1r4fw3hm0bp3spxkcrwwcmirkp4a8myqwpw8d6cxmz7ns6202860"; depends=[cluster doParallel entropy FNN foreach impute irlba matrixStats mclust Rcpp RcppArmadillo RcppParallel]; }; PINstimation = derive2 { name="PINstimation"; version="0.1.2"; sha256="0vys27ws0nk0bqf6pxgr689q3rnyx14ar560004g6pi0ii59mbyk"; depends=[coda dplyr furrr future knitr nloptr Rdpack rmarkdown skellam]; }; PK = derive2 { name="PK"; version="1.3-6"; sha256="0mynn21bmqn2jnaprlfvz0bf3mfjirdrc88n8d28hv74bk1a59vp"; depends=[]; }; - PKI = derive2 { name="PKI"; version="0.1-12"; sha256="0nidg6l9nrmpyimi502fydy22r247w9i4ngb2xdbxjvfhr17m0xd"; depends=[base64enc]; }; + PKI = derive2 { name="PKI"; version="0.1-14"; sha256="0rkr3gf5aqkrxi134kwggsyj151nwcwndy8d8q2vfy5rfwcyh960"; depends=[base64enc]; }; PKLMtest = derive2 { name="PKLMtest"; version="1.0.1"; sha256="0i1kxczlhn95jw1w7vw87svqhpq9j6xi4fhy974yjx9xhax171hq"; depends=[ranger]; }; PKNCA = derive2 { name="PKNCA"; version="0.10.2"; sha256="1imaj6a8y53hllhfxvmci4qh04pviw0zpwmxm12sqi1nl2kdb5y4"; depends=[checkmate digest dplyr nlme purrr rlang tibble tidyr]; }; PKPDsim = derive2 { name="PKPDsim"; version="1.3.0"; sha256="1n86zl8gka78anny7fj7l95bamckwkv5ijjiihpcfyj7fmac3y72"; depends=[BH data_table jsonlite magrittr MASS randtoolbox Rcpp stringr]; }; @@ -3794,12 +3860,13 @@ in with self; { POMaSPU = derive2 { name="POMaSPU"; version="1.0.0"; sha256="0jz3jgzdykv0xvfw3ix0hbs32as6dp7p5v8bj5nddknx10d0siya"; depends=[MASS matrixStats Rcpp RcppArmadillo]; }; POPInf = derive2 { name="POPInf"; version="1.0.0"; sha256="1h8fjl87srg2vs4p3pk0az4nr7zzcw08mvw99c6j9j344kzp2p49"; depends=[MASS randomForest]; }; POSSA = derive2 { name="POSSA"; version="0.6.4"; sha256="02lla3q3wkiw78b5v7pf7ali7s2l6aqc1bbaqf35zyihgiz3598g"; depends=[data_table]; }; - POSTm = derive2 { name="POSTm"; version="1.3"; sha256="0hnphl0lrblhj83z1ivcn7dnx2igvvbwzfkljbjdag59yqyjx7x0"; depends=[ape CompQuadForm]; }; + POSTm = derive2 { name="POSTm"; version="1.4"; sha256="0gd6nqm66lms7yscf53qn6ny6rqhqa6c5l256867q52xlgcnjx35"; depends=[ape CompQuadForm]; }; POSetR = derive2 { name="POSetR"; version="1.1.4"; sha256="00qz9z9mwbgvxh7775il2avrxdn116l8v31z3bksifvy81krw95a"; depends=[igraph Rcpp Rdpack]; }; POT = derive2 { name="POT"; version="1.1-10"; sha256="1gd76xc4gs7v3gcqaidnchm60gd2w7x0p6sqrvy38sfr4wbazz1s"; depends=[]; }; POUMM = derive2 { name="POUMM"; version="2.1.7"; sha256="0pwa97sffb571nfqnbc35dj9lr8z07wjsjnwibj9dhj2dr5b2cfp"; depends=[adaptMCMC ape coda data_table foreach ggplot2 lamW Rcpp]; }; POV = derive2 { name="POV"; version="0.1.4"; sha256="0mqhi410rwpgr6x5h57wqg0f5k01vva0c280zlfpmf8php121x7j"; depends=[broom formula_tools]; }; PP = derive2 { name="PP"; version="0.6.3-11"; sha256="1z7v5jiljm534lhr92vz9z3cafwcp6hdxyrr1nhli2arxc1nin76"; depends=[Rcpp]; }; + PPCDT = derive2 { name="PPCDT"; version="0.1.0"; sha256="0i3j959i7rd5k1qkj1lknvsbksl15ir06avcffai4pbnpx7bl8dm"; depends=[MASS]; }; PPCI = derive2 { name="PPCI"; version="0.1.5"; sha256="141811iq0g2rq7lxpz9a44kyjfylj85yqgcjq7b23xfg2wbcp8dd"; depends=[rARPACK]; }; PPLasso = derive2 { name="PPLasso"; version="2.0"; sha256="11xqpq7s8j1vrsf0x31pvk861wz4d3yg7a4gcwv43s3w5dxbljls"; depends=[cvCovEst genlasso ggplot2 glmnet MASS]; }; PPMR = derive2 { name="PPMR"; version="1.0"; sha256="07fky5xc1dmmn23wwdjm46c86i7q20dv5f2147828v52hhky873g"; depends=[Rcpp RcppArmadillo]; }; @@ -3808,11 +3875,11 @@ in with self; { PPRL = derive2 { name="PPRL"; version="0.3.8"; sha256="1m49n7kl9675hrlh6vqq69sp7bdiv4fwlncqpp58kz67jk1ypnf0"; depends=[Rcpp settings]; }; PPSFS = derive2 { name="PPSFS"; version="0.1.0"; sha256="180brwqcs2qjh01a1qwdy2a8g19scn4mxzc3s6pw8gyl2r3fzxi7"; depends=[brglm2 Rcpp RcppArmadillo]; }; PPTcirc = derive2 { name="PPTcirc"; version="0.2.3"; sha256="07py7zdl7nhc1a425mz7cmgl25k0k9fdid754pnkffn5n5xkbca1"; depends=[circular progress]; }; + PPbigdata = derive2 { name="PPbigdata"; version="1.0.0"; sha256="0v9p3mrxivq4ragi6039zgyxp9ksx3g3f6bksy9z08f8vyp1m1a8"; depends=[datanugget dplyr gtools magrittr MASS mclust rstiefel tourr weights]; }; PPforest = derive2 { name="PPforest"; version="0.1.3"; sha256="1byn2l91nws91xgjjal610vv4yns12z861rq3iks4kv4giwgdfq1"; depends=[doParallel dplyr magrittr plyr Rcpp RcppArmadillo tibble tidyr]; }; PPtreeViz = derive2 { name="PPtreeViz"; version="2.0.4"; sha256="008hlgi56p9wydpsb2f1dxi4slml7p417c34lw00hivbl53d6x97"; depends=[ggplot2 gridExtra partykit Rcpp RcppArmadillo]; }; PPtreeregViz = derive2 { name="PPtreeregViz"; version="2.0.5"; sha256="0yg67fg4rjvpwp1xvznsbv635wmf6jvhp38irffccx915qvj7r51"; depends=[DALEX data_table dplyr ggplot2 magrittr PPtreeViz Rcpp RcppArmadillo reshape2 shapr tibble tidyr]; }; PQLseq = derive2 { name="PQLseq"; version="1.2.1"; sha256="0lyynzvv7n1igzfrw52021bnxprqcm2hjxmlrsxkx4898ca46g60"; depends=[doParallel foreach Matrix Rcpp RcppArmadillo]; }; - PRANA = derive2 { name="PRANA"; version="1.0.4"; sha256="1i9gwz4dlsz9w0z3d995w6s6f10gwvwhyb77agbmmwym1fd2k2wh"; depends=[dnapath dplyr minet robustbase]; }; PRDA = derive2 { name="PRDA"; version="1.0.0"; sha256="1lklwfakd54ylm5gizq36ng6498c2izapsz9yz2a95cjf860rr23"; depends=[MASS pbapply Rcpp RcppArmadillo]; }; PRECAST = derive2 { name="PRECAST"; version="1.6.5"; sha256="17qk40j2by7bjc0r2wnyfca4drpzbrxp0m5r10a7494avqknjjk0"; depends=[colorspace cowplot dplyr DR_SC ggplot2 ggpubr ggthemes GiRaF gtools MASS Matrix mclust patchwork pbapply purrr Rcpp RcppArmadillo scales scater Seurat]; }; PREPShiny = derive2 { name="PREPShiny"; version="0.1.0"; sha256="0zsg07y6nhp2lma3pdz8xd981y3mh8k21il5jv0inma1d1xr4g3f"; depends=[dplyr psycho rmarkdown shiny]; }; @@ -3823,8 +3890,9 @@ in with self; { PRISMA = derive2 { name="PRISMA"; version="0.2-7"; sha256="0sk2d07m8rhipa0kdbaf8ngryda6f1ihp5akpnyw2llajf0x8as5"; depends=[ggplot2 gplots Matrix]; }; PRISMA2020 = derive2 { name="PRISMA2020"; version="1.1.1"; sha256="0jhf1kgcc29b8gsb42b3d5hyfzsa13lz9qgs104ynrzld94kqqwf"; depends=[DiagrammeR DiagrammeRsvg DT htmltools htmlwidgets rio rsvg scales shiny shinyjs stringr webp xml2 zip]; }; PRISMAstatement = derive2 { name="PRISMAstatement"; version="1.1.1"; sha256="1vvab8h71g8c910s2h4d12qafqdncfzmsh5f1b4m79plpqi3s49z"; depends=[DiagrammeR]; }; + PRNG = derive2 { name="PRNG"; version="0.0.2"; sha256="1x1nv5pfz521jkwsnafc55d4mlkp5yfy3ywya7y8p1qjsj0bisfx"; depends=[]; }; PROBShiny = derive2 { name="PROBShiny"; version="0.1.0"; sha256="17p6pb8nwq36ha697f2lf8nwzj5cylmh8rdzyag49ks5hi9painb"; depends=[epitools LaplacesDemon rmarkdown rpivotTable shiny shinyMatrix]; }; - PROJ = derive2 { name="PROJ"; version="0.4.5"; sha256="0iq33v6z0plz1q9vgsaa3lryfdc7xawny34r8bk65kx35a32zvxb"; depends=[]; }; + PROJ = derive2 { name="PROJ"; version="0.5.0"; sha256="16wcr1p2rp9d5y14n9km0d24zhvja3qj5d34lx9mv9l969licqzs"; depends=[lifecycle wk]; }; PROMETHEE = derive2 { name="PROMETHEE"; version="1.1"; sha256="0r53mb9ndwm4yli3h50cfamsjzpq6b67g72mszm7lpbqpj58wqw6"; depends=[lpSolve]; }; PROSPER = derive2 { name="PROSPER"; version="0.3.3"; sha256="1wdrdqii7d4yfky6706n9xjmabnz99jjja1c80nbj3fp8idsbli5"; depends=[data_table]; }; PROreg = derive2 { name="PROreg"; version="1.3"; sha256="0x3gaadd9nd5mcs6l2jv0874afps13qgq81bqwcg1hhgjzy2k4mm"; depends=[car fmsb Matrix matrixcalc numDeriv RColorBrewer rootSolve]; }; @@ -3834,7 +3902,7 @@ in with self; { PRP = derive2 { name="PRP"; version="0.1.1"; sha256="1q4idlk2crxsd841b203hkcyp9glqhsg83liddqlxixxih7rkzp1"; depends=[mvtnorm]; }; PRROC = derive2 { name="PRROC"; version="1.3.1"; sha256="1m28h8pcd78049lz2qixhkcr9h5b3jik3maqzfbvq9y58z71i4a7"; depends=[]; }; PRSPGx = derive2 { name="PRSPGx"; version="0.3.0"; sha256="1vvclrp6h63l471qvgwkdhs52lrkapz0v90gwld89zwim6pnh7av"; depends=[bdsmatrix bigparallelr bigsnpr bigsparser bigstatsr gglasso GIGrvg glmnet lmtest Matrix matrixcalc MCMCpack mvtnorm propagate Rfast SGL]; }; - PRSim = derive2 { name="PRSim"; version="1.4-4"; sha256="17aqydzv220q15mhn1sir5ly5wzmv7sx1ckmk9fwr97lnf0pdh09"; depends=[goftest lmomco mev splus2R wavScalogram]; }; + PRSim = derive2 { name="PRSim"; version="1.5"; sha256="1imy9blzdk2y4xzmsb86g49zzm59cpi2xrh3bgpw20611a03505d"; depends=[goftest lmomco mev splus2R wavScalogram]; }; PRTree = derive2 { name="PRTree"; version="0.1.0"; sha256="04200m3bcqlb9q5rpgnd1h6nwbaxhb09ciwrpfss1airzhip5505"; depends=[]; }; PReMiuM = derive2 { name="PReMiuM"; version="3.2.13"; sha256="1qamq7glc0dag1ps0dr4f931ij9jk91lj5h1k2g0yd0h3kqamawn"; depends=[BH cluster data_table gamlss_dist ggplot2 plotrix Rcpp RcppEigen sf spdep]; }; PResiduals = derive2 { name="PResiduals"; version="1.0-1"; sha256="0mq16cs07hw5c9jj08vpgbb15xvjvz9h0npsbqphiibsb6ca5fwb"; depends=[Formula MASS rms SparseM]; }; @@ -3857,13 +3925,14 @@ in with self; { PScr = derive2 { name="PScr"; version="1.1"; sha256="0cbmb1z4iwxw82m3f3y5iyr2hd1mgqsrvn7ip4rmsqy3zakyh06s"; depends=[pracma survival VGAM]; }; PSinference = derive2 { name="PSinference"; version="0.1.0"; sha256="19y3pbb75rkgx9dlykrq6aa0pbn968d83bsl1d3qlnb06b6gncx6"; depends=[MASS]; }; PStrata = derive2 { name="PStrata"; version="0.0.5"; sha256="1nzvspzihxwra0hzyc8cfnml19xz26dam23y2q09794dpg5a7pcf"; depends=[abind dplyr ggplot2 lme4 purrr rstan stringr]; }; - PSweight = derive2 { name="PSweight"; version="1.1.8"; sha256="0vawkkgm72s17cjfww9175dyr100lxdv4gf35p2lz8wcnbsklnv5"; depends=[gbm ggplot2 lme4 MASS nnet numDeriv SuperLearner]; }; + PSweight = derive2 { name="PSweight"; version="1.2.0"; sha256="1p0iq95jwhh6j3gw3zd8m58rryy8j33k2lrzypb5qzhwrgx2i41v"; depends=[gbm ggplot2 lme4 MASS nnet numDeriv SuperLearner]; }; PTAk = derive2 { name="PTAk"; version="2.0.0"; sha256="1xnjils6i36mpzzg7lpi1bpq90mm4gwp4szk6fcg9i4dvkrznfki"; depends=[tensor]; }; PTE = derive2 { name="PTE"; version="1.7"; sha256="1azkrij4kfmvp03lnzm88gwgvz8g54jq94j0qg8ynxvyjzrppc98"; depends=[doParallel foreach survival]; }; PTERP = derive2 { name="PTERP"; version="1.0"; sha256="1mzb3lm1wrbya5lmgndrkz5arwpz5zr4gfl5bnvcbs0g74xlsa44"; depends=[MASS mvtnorm survival]; }; PTSR = derive2 { name="PTSR"; version="0.1.2"; sha256="0zwqw8zdp0p05nm64yg658iqfbj26n3v2py8r5m6g1sjispm5whf"; depends=[actuar extraDistr numDeriv SuppDists]; }; PTXQC = derive2 { name="PTXQC"; version="1.1.1"; sha256="0855xir9b604lhhymxf3rhin2sikxvg25zbgd5gvwgc5n3114d3m"; depends=[data_table ggdendro ggplot2 gridExtra gtable htmlTable knitr magrittr plyr R6 R6P RColorBrewer reshape2 rmarkdown rmzqc seqinr UpSetR xml2 yaml]; }; PTwins = derive2 { name="PTwins"; version="0.1.1"; sha256="166mc7w52n9d3n72h5jvvhbki87prkils3yigdf57dn9pyixrd66"; depends=[]; }; + PUGMM = derive2 { name="PUGMM"; version="0.1.0"; sha256="03bwg4mb0kc708plqzym0xw5giai45nk601fs53gfnad57y70wdp"; depends=[ClusterR doParallel foreach igraph MASS Matrix mclust mcompanion ppclust]; }; PUMP = derive2 { name="PUMP"; version="1.0.3"; sha256="1s1aqma0p32y9db3xf9yrfgg12i3skdgzcvw3kg9s5z1msx4gax7"; depends=[dplyr future ggplot2 ggpubr glue lme4 magrittr mvtnorm purrr randomizr readr rlang stringr tibble tidyr tidyselect]; }; PUPAIM = derive2 { name="PUPAIM"; version="0.3.1"; sha256="1sypmlpjsdn2rm6pci64xv6ibixz43zhjaw0k8q9jp3cajbb11qh"; depends=[ggplot2 Metrics nls2]; }; PUPAK = derive2 { name="PUPAK"; version="0.1.1"; sha256="1274z53qclddww90qgnl9vwdnxv2p66lclmq9fixchnpgm9xc6qw"; depends=[ggplot2 Metrics nls2 segmented]; }; @@ -3874,10 +3943,11 @@ in with self; { PVR = derive2 { name="PVR"; version="0.3"; sha256="0pcnazkiwmicr3k6k70r8skqk0pd46fcqhhxghawxjs4slgnygkj"; depends=[ape MASS splancs]; }; PVplr = derive2 { name="PVplr"; version="0.1.2"; sha256="1hrd2r3m2qy8r4wjacbhpqsmlchdjqk6iyydiy5k1ccrmv8da74a"; depends=[broom cluster dplyr forecast ggplot2 magrittr minpack_lm purrr rlang scales segmented stlplus tidyr zoo]; }; PWEALL = derive2 { name="PWEALL"; version="1.3.0.1"; sha256="1p6wq7khpzs6cw2chswp17bq383ppm6q2ia9p6y1gggrazsymdvg"; depends=[survival]; }; + PWEV = derive2 { name="PWEV"; version="0.1.0"; sha256="1jl63wp6nl2zyznc63zcb97yi1fvzj4mic4ri0ni515s0nb5jd5b"; depends=[Metrics rugarch rumidas WeightedEnsemble xts zoo]; }; PWEXP = derive2 { name="PWEXP"; version="0.5.0"; sha256="1xvpabfi04alhmm640bdlgx1al19nrs43qmichpcv3sllw9bc74x"; depends=[doSNOW fastmatch foreach segmented survival]; }; PWIR = derive2 { name="PWIR"; version="0.0.3"; sha256="05f4mj8id8ikfz63c8c1lkbxl7s1b2q5xri8iicn1xv2m3w89p2v"; depends=[bibliometrix igraph progressr]; }; PaLMr = derive2 { name="PaLMr"; version="0.2.0"; sha256="1i1kzd41payn0vpplnj5wdf83y00ga5r4y86vc38xkpxymaa7i4r"; depends=[httr jsonlite]; }; - PaRe = derive2 { name="PaRe"; version="0.1.12"; sha256="1axxmqnhw0aw1g3985ld5ahf6qk954g7xv1ddrdavvyh8601l7lv"; depends=[checkmate cli cyclocomp desc DiagrammeR DiagrammeRsvg dplyr git2r glue igraph lintr magrittr pak R6 rmarkdown rsvg stringr]; }; + PaRe = derive2 { name="PaRe"; version="0.1.13"; sha256="1p65p3anwyk1zg82lir7wqvl9zxi7p4hjb70kvfhj06p1n8f653c"; depends=[checkmate cli cyclocomp desc DiagrammeR DiagrammeRsvg dplyr git2r glue igraph lintr magrittr pak R6 rmarkdown rsvg stringr]; }; Pade = derive2 { name="Pade"; version="1.0.6"; sha256="0bjkr3yh1kxymyrfzi9amjznxgqc2xx69zhs2immn4sk1w3xzvzp"; depends=[]; }; PairViz = derive2 { name="PairViz"; version="1.3.6"; sha256="12rg1ml401c9zz1q6qy2ghs18x9vdb8smrkb2bcp34afbg5dvdd3"; depends=[graph gtools TSP]; }; PairedData = derive2 { name="PairedData"; version="1.1.1"; sha256="07y5fd4fkwfp0lbacf41ya8cn7x4n1haxl0cln9iibjffc1mbr5q"; depends=[ggplot2 gld lattice MASS mvtnorm]; }; @@ -3893,12 +3963,13 @@ in with self; { PakPMICS2018hh = derive2 { name="PakPMICS2018hh"; version="0.1.0"; sha256="0wkjxy8qkndhnyf1w03cr3g7s03cm60yn0lxn5j6hvh019b28nmz"; depends=[tibble]; }; PakPMICS2018mm = derive2 { name="PakPMICS2018mm"; version="0.1.0"; sha256="08f2n134q545kwysy705mgsy6319ns4l9pwxldlxvbzq0lha4hf9"; depends=[tibble]; }; PakPMICS2018mn = derive2 { name="PakPMICS2018mn"; version="0.1.0"; sha256="1r5cn1mx7i7hif64lhfcdz4xqqfj3j45i092370xhhi19pqq217n"; depends=[tibble]; }; - PamBinaries = derive2 { name="PamBinaries"; version="1.8.0"; sha256="1l89vk9jhlfghk89945815ygwwdjmv5mkibb2cz7307vy6jl60ka"; depends=[dplyr ggplot2]; }; + PamBinaries = derive2 { name="PamBinaries"; version="1.9.0"; sha256="1anxn06l714ila4kjdbvrmfnmg7k7rwbscvzdd0z768h84s34v19"; depends=[dplyr ggplot2]; }; PanCanVarSel = derive2 { name="PanCanVarSel"; version="0.0.3"; sha256="06xkzg2kvyr6ivm1z71x2pk20j37h36sx6kf4kmc8q50cq73k9jl"; depends=[Matrix msm mvtnorm smoothmest]; }; PanJen = derive2 { name="PanJen"; version="1.6"; sha256="18cl9rls98v286kk6lyxxws3w59zpzgmqi5250gdgcf71xy2lhvm"; depends=[mgcv]; }; Pandora = derive2 { name="Pandora"; version="24.2.0"; sha256="0zqsqc1wqmps3dd79w4qwxyl4idmrl1zn24s5nmsazk5l1i984p1"; depends=[curl dplyr jsonlite magrittr openxlsx readODS readr readxl rlang yaml]; }; PanelCount = derive2 { name="PanelCount"; version="2.0.1"; sha256="07dn8a86q51gvy4xkqz2mfmqkc59cf4zcwcqrw366b791y5g182y"; depends=[MASS Rcpp RcppArmadillo statmod]; }; - PanelMatch = derive2 { name="PanelMatch"; version="2.0.1"; sha256="07c2zghrb1ykq08qjkpc86j64b4w04kk0hxfdxr60bzsvgnb0kg3"; depends=[CBPS data_table ggplot2 igraph MASS Matrix Rcpp RcppArmadillo RcppEigen]; }; + PanelMatch = derive2 { name="PanelMatch"; version="2.2.0"; sha256="14y6msvs4h3xdpi83yi6q4a58xqbf1nxs5m0wbbzszzj7jdjiq79"; depends=[CBPS data_table doParallel foreach ggplot2 MASS Matrix Rcpp RcppArmadillo RcppEigen]; }; + PanelTM = derive2 { name="PanelTM"; version="1.0"; sha256="1x9zzs88cprwjlwwgnfvv7fmx12p57s5wwxsgjch8i11fzyjkw48"; depends=[pracma]; }; PantaRhei = derive2 { name="PantaRhei"; version="0.1.2"; sha256="0lv04aa70yd5gr0zfh2gmah4d4h3kw0lym6284akcvll8mhdi8dd"; depends=[]; }; ParBayesianOptimization = derive2 { name="ParBayesianOptimization"; version="1.2.6"; sha256="0g5i4908fl2j1a4jfsg1xs4q92mc29zp8dyf52a370ki2512w6h1"; depends=[crayon data_table dbscan DiceKriging foreach ggplot2 ggpubr lhs]; }; ParDNAcopy = derive2 { name="ParDNAcopy"; version="2.0"; sha256="017xwznhfibi8kp0ifww02c0qcq0vxs06rjww4kcp2bvdmld8kc4"; depends=[DNAcopy]; }; @@ -3907,11 +3978,12 @@ in with self; { ParamHelpers = derive2 { name="ParamHelpers"; version="1.14.1"; sha256="088sl3az4ysq8cyw82brdn9xm5yy7rqskxih462d1m5hi62gyl04"; depends=[backports BBmisc checkmate fastmatch]; }; Pareto = derive2 { name="Pareto"; version="2.4.5"; sha256="19mawxs743i7lb9inh51xdfpx0s72cvcw4iylr250r17r6qp4y8g"; depends=[]; }; ParetoPosStable = derive2 { name="ParetoPosStable"; version="1.1"; sha256="1fwji5wrhbxr089dll812csamvb5q2pxn1607rpirarifgfbj28m"; depends=[ADGofTest doParallel foreach lmom]; }; + Paris2024Colours = derive2 { name="Paris2024Colours"; version="0.1.2"; sha256="12xycmqc9hr12db7w9499l89gmww5j0vs6nhyzsirkbg8vvq8qql"; depends=[]; }; PartCensReg = derive2 { name="PartCensReg"; version="1.39"; sha256="0blzv57cbxqghkz4fc3plvrcw80g0kx17dzmajkfv598m1wm6hc8"; depends=[Matrix optimx ssym]; }; - PartialNetwork = derive2 { name="PartialNetwork"; version="1.0.3"; sha256="0s551krji472qrwaq2a7s06l42kzrbhx7w9g5ijfn5q69i8ns9x3"; depends=[abind doParallel doRNG foreach Formula formula_tools Matrix Rcpp RcppArmadillo RcppEigen RcppNumerical RcppProgress]; }; + PartialNetwork = derive2 { name="PartialNetwork"; version="1.0.4"; sha256="010q3d0r40kszdsyc6bish7vrzl98zxi47ppbnv5n86p0n3dckjn"; depends=[abind doParallel doRNG foreach Formula formula_tools Matrix Rcpp RcppArmadillo RcppEigen RcppNumerical RcppProgress]; }; Partiallyoverlapping = derive2 { name="Partiallyoverlapping"; version="2.0"; sha256="0pb0digyigqyzb0zqikgz002kqf1xprcjhxr62a7iqbzy1yycayf"; depends=[]; }; - PatientProfiles = derive2 { name="PatientProfiles"; version="0.6.2"; sha256="1dmvfrdxgfbwdkb940igskf72wdsl66px4hqbdg5d0j73dxclgcn"; depends=[CDMConnector checkmate cli dplyr gt lifecycle lubridate magrittr omopgenerics rlang stringr tidyr visOmopResults]; }; - Patterns = derive2 { name="Patterns"; version="1.4"; sha256="12ci26i0ks23ff11g3pmsns5f3crnrac2hnlqc2pglhrv180m37r"; depends=[abind gplots igraph jetset lars lattice limma Mfuzz movMF nnls plotrix repmis SelectBoost tnet VGAM WGCNA]; }; + PatientProfiles = derive2 { name="PatientProfiles"; version="1.1.0"; sha256="0f2qnf150h47ld5n2718r6iyxkb5hi2r6z3m7krdbr1i4fd2h5w2"; depends=[CDMConnector checkmate cli dplyr lifecycle magrittr omopgenerics purrr rlang stringr tidyr visOmopResults]; }; + Patterns = derive2 { name="Patterns"; version="1.5"; sha256="1b4krl9gcwrxrslqyc0hhc6kqc7q34i70pyx9yb7xkdixs6dkr95"; depends=[abind cluster e1071 gplots igraph jetset lars lattice limma Mfuzz movMF nnls plotrix repmis SelectBoost tnet VGAM WGCNA]; }; PdPDB = derive2 { name="PdPDB"; version="2.0.1"; sha256="05aqg0rqrnlmvjxa32ms1vywgwhw5zlfkyf2ij0fn06rp8l2z3lv"; depends=[dendextend plyr tseries]; }; Peacock_test = derive2 { name="Peacock.test"; version="1.0"; sha256="0ypvwywipyh8lm8xkazsfjgjpvvyi2g8kid63qff11372p33m6xs"; depends=[]; }; PeakError = derive2 { name="PeakError"; version="2023.9.4"; sha256="07hidwjf0pgahdw12jlvv2cygfvizv1zjir49nmra01zm1yr5k62"; depends=[]; }; @@ -3927,6 +3999,7 @@ in with self; { PepSAVIms = derive2 { name="PepSAVIms"; version="0.9.1"; sha256="0m4jrq6wcjy0k80gvrnm9f7kvi1ifx9182xfq0psyaxpj0ggvzij"; depends=[elasticnet]; }; Peptides = derive2 { name="Peptides"; version="2.4.6"; sha256="199bbfcdmy8mipjchsyxwxa3jssy60n9n9j7hcsab30kwjyq22zm"; depends=[Rcpp]; }; PerFit = derive2 { name="PerFit"; version="1.4.6"; sha256="13917nvxii8pg69h1wcpmlv45sdrdldd3zxdrypr4mn456ff74k4"; depends=[fda Hmisc irtoys ltm MASS Matrix mirt]; }; + PerMat = derive2 { name="PerMat"; version="0.1.0"; sha256="0ad9xdi1w7zis2ks1jvl4l54rfcdgayipydjcqz5hfq6qkz5k31y"; depends=[]; }; Perc = derive2 { name="Perc"; version="0.1.6"; sha256="1nwbj56m7pxrg8dyv36501b0lvpq8gbhcr07vs4nps8n3rqwwg81"; depends=[]; }; PerfMeas = derive2 { name="PerfMeas"; version="1.2.5"; sha256="13yjk0kwpbsqwl056hzf0zj2br1mk4faqcn1whdfxmq348c14hjb"; depends=[graph limma RBGL]; }; PerformanceAnalytics = derive2 { name="PerformanceAnalytics"; version="2.0.4"; sha256="0ci26hsj4wnw9g0mh4vrn0cg986cpcpx169rvw6v6rbnjxq718bq"; depends=[quadprog xts zoo]; }; @@ -3937,9 +4010,8 @@ in with self; { PersianStemmer = derive2 { name="PersianStemmer"; version="1.0"; sha256="1dpfkafijg7g7hzka93l1ymq5rcnjsfgvkvbpdx3vjnid05kh4v1"; depends=[]; }; PersomicsArray = derive2 { name="PersomicsArray"; version="1.0"; sha256="1d5gxd65b01m13rgbdhk6w3l43vqcbdk0s1pbgc8h6cnipj55z0i"; depends=[jpeg raster stringr tiff]; }; PesticideLoadIndicator = derive2 { name="PesticideLoadIndicator"; version="1.3.1"; sha256="109pasc3q0zwwp2pamx1pqz1rvhw269bnbqdh79xy77w82jpma15"; depends=[dplyr magrittr readxl rlang stringr]; }; - Petersen = derive2 { name="Petersen"; version="2023.12.1"; sha256="0wn3m34qr9nr0v3pp0yqi2z2hpnivgfn2dw5ajd4l32n136psv1h"; depends=[AICcmodavg bbmle BTSPAS formula_tools ggplot2 MASS Matrix msm numDeriv plyr reshape2 rlang SPAS stringr tidyr]; }; + Petersen = derive2 { name="Petersen"; version="2024.6.1"; sha256="03xhsmlgqgp037ccy2q2a65cspcy1qxm1vzb6yljhv61r60zfqjz"; depends=[AICcmodavg bbmle BTSPAS formula_tools ggplot2 MASS Matrix msm numDeriv plyr reshape2 rlang SPAS stringr tidyr]; }; PetfindeR = derive2 { name="PetfindeR"; version="2.1.0"; sha256="1pb3mqv4pxl971j210m7vwhz9qqbhb7l5fpmb1vjwkc5hx11zh9l"; depends=[R6]; }; - PhViD = derive2 { name="PhViD"; version="1.0.8"; sha256="038pw24sb8ja8pbbmj05rww6413i2ljybb2dxwgrpffv22aqawmc"; depends=[LBE MCMCpack]; }; PhageCocktail = derive2 { name="PhageCocktail"; version="1.0.3"; sha256="0lr1gnwpaqrf8ny5ssx2cjv8hi6q2ilmr7qif3jl9agh4w0nkp89"; depends=[bipartite factoextra readxl RJSONIO smerc stringr]; }; Phase123 = derive2 { name="Phase123"; version="2.1"; sha256="0bz867wsnrflzlzrql1vgacymx70rb9wik9jw3g34i2vigpl8x8i"; depends=[Rcpp RcppArmadillo survival]; }; Phase12Compare = derive2 { name="Phase12Compare"; version="1.5"; sha256="0n9rjgdllpnj451a8d4p8x3mjf23czcmk7cn1c9v3l7mg4jn18h2"; depends=[mvtnorm Rcpp RcppArmadillo]; }; @@ -3954,11 +4026,11 @@ in with self; { PhilipsHue = derive2 { name="PhilipsHue"; version="1.0.0"; sha256="03ghwi14jsz1ff70dl30p6w0d9v29kc70kip2bcinxm6v4l2q383"; depends=[httr pkgload purrr yaml]; }; PhitestR = derive2 { name="PhitestR"; version="0.2.0"; sha256="113f176q9kaghmqivqcg9l6zczx7dmawhybb8hwb2xpb0mhcgh4l"; depends=[fitdistrplus]; }; PhotosynQ = derive2 { name="PhotosynQ"; version="0.2.3"; sha256="10n06sfbwv5w96m3yv5ws7yddfv2n8pp1rc730870wiavl6cbn63"; depends=[getPass httr]; }; - PhyInsight = derive2 { name="PhyInsight"; version="0.1.0"; sha256="1r7y10g2vriy360f7j8agmjw5sgzm2vr2dypj8v78ssklb6apd08"; depends=[ape Biostrings bold DECIPHER]; }; PhySortR = derive2 { name="PhySortR"; version="1.0.8"; sha256="19426xjdii74qds0wmq5sa88zys81nyqb9lvf9pfihbjgrjr770a"; depends=[ape phytools]; }; PhylogeneticEM = derive2 { name="PhylogeneticEM"; version="1.7.0"; sha256="1yxg13jm6jhciip76wh9936d10hxhjqdvlj15f249jzn7vfs6pyx"; depends=[ape capushe foreach gglasso glmnet LINselect MASS Matrix plyr Rcpp RcppArmadillo robustbase]; }; PhysActBedRest = derive2 { name="PhysActBedRest"; version="1.1"; sha256="0ww9gcni9f0mwya1d3v45wazrss7lq8b75xcp4fb4kxwbh9s35kw"; depends=[chron lubridate stringr]; }; PhysicalActivity = derive2 { name="PhysicalActivity"; version="0.2-4"; sha256="0b27prkv3x6v2afz0y53ccs9scibpc7nj54n0hpd9fgn1wyg4c40"; depends=[]; }; + PhytosanitaryCalculator = derive2 { name="PhytosanitaryCalculator"; version="1.1.1"; sha256="1545xy338wanrkpy55ji4ap9wf7pldrb07pmhxcmhp73w3l82r2c"; depends=[AcceptanceSampling shiny]; }; PieGlyph = derive2 { name="PieGlyph"; version="0.1.0"; sha256="1wg8b0zsgcsgrmx5yz0sj6bifk76zr085lac3xlkrxqnxwxvlk0n"; depends=[cli dplyr forcats ggforce ggplot2 plyr rlang scales tidyr]; }; PieceExpIntensity = derive2 { name="PieceExpIntensity"; version="1.0.4"; sha256="023hq0gg1vi0j3yf8p5lisgs8wfp5qwyd4akxxzx7wad2985gxb3"; depends=[Rcpp RcppArmadillo]; }; Pijavski = derive2 { name="Pijavski"; version="1.0.3"; sha256="0jspc19fn1mqv3zjr89sy7rqbbyjk3ij3rhrg2dsw167w63lpykx"; depends=[Rcpp]; }; @@ -3970,7 +4042,7 @@ in with self; { PlasmaMutationDetector2 = derive2 { name="PlasmaMutationDetector2"; version="1.1.11"; sha256="1dcmw6i488gxqqn52r0n9aclnz41ba2gc99vf6ac1wx5flcfm3l9"; depends=[GenomicRanges ggplot2 robustbase Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; Plasmidprofiler = derive2 { name="Plasmidprofiler"; version="0.1.6"; sha256="10m3knmz0596rm30ncyfprar6l42bjm7r34n4pjz1biqmiz6yz6k"; depends=[ape dplyr gdata ggdendro ggplot2 gridExtra gtable htmlwidgets magrittr plotly plyr RColorBrewer reshape2 stringr]; }; PlatformDesign = derive2 { name="PlatformDesign"; version="2.1.4"; sha256="0nnvi40lq6rxjxvf3p5mdn9gp4kp8nr73yzxgrpbg125cqf23vhm"; depends=[mvtnorm]; }; - Platypus = derive2 { name="Platypus"; version="3.5.0"; sha256="03ymh011wyhlc4pisnrac1nijfw08gc793dj2pzwxzkcwk7g3q99"; depends=[Biostrings cowplot dplyr ggplot2 ggtree jsonlite knitr magrittr Matrix plyr reshape2 seqinr Seurat SeuratObject stringr tibble tidyr useful]; }; + PlayerChart = derive2 { name="PlayerChart"; version="1.0.0"; sha256="1rvy8jq422c6yrx0wyvsrqkdvcffwn7lpca2k17yzwiidd5w8l1a"; depends=[dplyr ggplot2 ggtext magrittr tidyr]; }; PlayerRatings = derive2 { name="PlayerRatings"; version="1.1-0"; sha256="04hdjv1gb5b3zym2ryjpqrqhs823nlkmbimfnxw1cfn921ljjgpj"; depends=[]; }; PlotBivInvGaus = derive2 { name="PlotBivInvGaus"; version="0.1.0"; sha256="1qgrg43ry9carhn49zbm24gy77k1z7xnvgmr78xwg6b6j1v6xd8d"; depends=[plotly]; }; PlotContour = derive2 { name="PlotContour"; version="0.1.0"; sha256="0jjzrxmx1k1s8fyfs9m5a864pmvjh2bdklbhrc3nbhb0c7wd3h9z"; depends=[KernSmooth MASS]; }; @@ -3997,6 +4069,7 @@ in with self; { PolicyPortfolios = derive2 { name="PolicyPortfolios"; version="0.3"; sha256="1syycldfzwymymhai0ifli93iv3p8p6xbyk25mvln6zgb43iind1"; depends=[dplyr ggplot2 ineq mgcv reshape2 vegan]; }; PolyHaplotyper = derive2 { name="PolyHaplotyper"; version="1.0.1"; sha256="1sc1n42h78nyv004ddykvh1ljjczyiv5rl9sgxhi207lql1zd3wa"; depends=[XML]; }; PolyPatEx = derive2 { name="PolyPatEx"; version="0.9.2"; sha256="1z1hwvsw7b6cz5xfy35a5ldrzb3fhp3swiyz56v1zqblpsaz8n9g"; depends=[gtools]; }; + PolyTree = derive2 { name="PolyTree"; version="0.0.1"; sha256="0np5v1255crfp1x7613rdzgkzkm64ikkjm67xrsncijr202yh1gq"; depends=[FOCI igraph]; }; PolyTrend = derive2 { name="PolyTrend"; version="1.2"; sha256="17n6phkzgaqrlzs8x1l5smnij1gxfklr0zj9pqfy5n8xqnpwssm5"; depends=[]; }; Polychrome = derive2 { name="Polychrome"; version="1.5.1"; sha256="0hyi02m2jpdhk1ky6ihz6dv5pwqwjwk4csjim2qr8ywx8midmrvg"; depends=[colorspace scatterplot3d]; }; PolycrossDesigns = derive2 { name="PolycrossDesigns"; version="1.1.0"; sha256="0qhjy4pkksg45c6i3axwcnqa5miz4ky52w9qngf1d1x62lckb29i"; depends=[]; }; @@ -4008,7 +4081,7 @@ in with self; { PooledCohort = derive2 { name="PooledCohort"; version="0.0.2"; sha256="16n65jm1w2hxd1lrn3mj1z31ydgjc5jjhc4ffjscajhc140vf7yb"; depends=[glue]; }; PooledMeanGroup = derive2 { name="PooledMeanGroup"; version="1.0"; sha256="0i9s7qskjnji3mf6clsi69rnni57v8cysgr9gh3hvxjzlf1sq8y7"; depends=[]; }; PopED = derive2 { name="PopED"; version="0.6.0"; sha256="0s8lr17s6w8isjig4z8jzgpnpsb1kg98d32y7kslbwzl08cbnza0"; depends=[boot codetools dplyr ggplot2 gtools magrittr MASS mvtnorm purrr stringr tibble]; }; - PopGenHelpR = derive2 { name="PopGenHelpR"; version="1.2.1"; sha256="09j5ih4ggxzpfhr7ch2d2rpfkpwrgppqrm164yj68daa94cq8ga9"; depends=[adegenet dartR dplyr ggplot2 gstat hierfstat magrittr poppr raster reshape2 rlang scatterpie sp spData spdep StAMPP vcfR]; }; + PopGenHelpR = derive2 { name="PopGenHelpR"; version="1.3.0"; sha256="0s7grqzh3dy6rn7ricq79sr936q3prnj9zq2c5474pyl0pypv85p"; depends=[adegenet dartR dplyr ggplot2 gstat hierfstat magrittr poppr raster reshape2 rlang scatterpie sp spData spdep StAMPP vcfR]; }; PopGenReport = derive2 { name="PopGenReport"; version="3.1"; sha256="19df1178kznrrzfkhaaf0lkmfk6kasl0x39k3zv3b5w6k7697igs"; depends=[ade4 adegenet calibrate dismo gap gdistance genetics GGally ggplot2 knitr lattice mmod pegas plyr R_utils raster reshape2 RgoogleMaps sp vegan xtable]; }; PopVar = derive2 { name="PopVar"; version="1.3.1"; sha256="165c6gfj8qgpvv7ybl571abzf011c738l7xk5lkq9fbvbdqgdc5d"; depends=[BGLR qtl rrBLUP]; }; PopulationGrowthR = derive2 { name="PopulationGrowthR"; version="0.1.1"; sha256="0cq7vnmslb4y9d9a4jk7z5xajw4vr2q1qqhkak9m9gidyr4dp5zl"; depends=[dplyr]; }; @@ -4037,6 +4110,7 @@ in with self; { PredPsych = derive2 { name="PredPsych"; version="0.4"; sha256="00h4p1szqzh4a2kjvlriyinh330cfwxsrvs6fi089mr207q890vj"; depends=[caret e1071 ggplot2 MASS mclust party plyr randomForest rpart statmod]; }; PredictABEL = derive2 { name="PredictABEL"; version="1.2-4"; sha256="144xmfsp62ssmg501f4y173jrqyv8vps36j4yrwg6ghcmyc01wf8"; depends=[Hmisc lazyeval PBSmodelling ROCR]; }; PredictionR = derive2 { name="PredictionR"; version="1.0-12"; sha256="0kgc8rjdqskasdaxsbir9gwvm55rw5cpdg3y9nsj7ccg9fc1ji19"; depends=[fitdistrplus Renext]; }; + PredictorSelect = derive2 { name="PredictorSelect"; version="0.1.0"; sha256="1iibvh9fifjg962hirwnnmksc81yjpv5jb13yjhb4sjpi7fd6482"; depends=[]; }; PresenceAbsence = derive2 { name="PresenceAbsence"; version="1.1.11"; sha256="1dz4psinvj5zizj663rfigfr14z9d6khj2jqkk3bfr9qg19n8fn6"; depends=[]; }; PressPurt = derive2 { name="PressPurt"; version="1.0.2"; sha256="05kca0rlhlvhgnw3r3p4sh42zwvhrhcjdwz65ykp14jxybfhc8in"; depends=[data_table ggplot2 gridExtra reticulate]; }; PrettyCols = derive2 { name="PrettyCols"; version="1.0.1"; sha256="1q4l9138kdbk8m35k3am4qksi14rcfd793lplm3s1d17dh7zqb5f"; depends=[ggplot2 purrr]; }; @@ -4051,7 +4125,7 @@ in with self; { ProSGPV = derive2 { name="ProSGPV"; version="1.0.0"; sha256="1837p4vg1g4225rv55gaphma429j6pnfh078cxpv5ha2n0h1sfz3"; depends=[brglm2 glmnet MASS survival]; }; ProTrackR = derive2 { name="ProTrackR"; version="0.4.3"; sha256="08c53ndrfgaw8hxvrw13ypcbm62nlxgfnip7p9pivvlrjpiiryvj"; depends=[audio lattice signal tuneR XML]; }; ProbBayes = derive2 { name="ProbBayes"; version="1.1"; sha256="0bkbqyrmpy9swaxsl91w6iiw81znjf1lk4b0vqgn6wdnrir6gkmn"; depends=[ggplot2 gridExtra LearnBayes shiny]; }; - ProbBreed = derive2 { name="ProbBreed"; version="1.0.3.1"; sha256="04i46n23srds38fz3fxvdpbmf2639902a2p19ixkyk2yab82afdb"; depends=[ggplot2 lifecycle rlang rstan]; }; + ProbBreed = derive2 { name="ProbBreed"; version="1.0.3.2"; sha256="150kbj6mkabgswxjg9adihz7i4paaknni49j2x9i7jyaw79iym78"; depends=[ggplot2 lifecycle rlang rstan]; }; ProbMarg = derive2 { name="ProbMarg"; version="1.0.1"; sha256="02qc6c08vfg3inh14d3dzq28zgsgk9p7kb2ni9d14pcx5w9q6sji"; depends=[]; }; ProbSamplingI = derive2 { name="ProbSamplingI"; version="2.0"; sha256="0hmrl7p89rrzjhxrv088yhs8yqw32iwjnfplpcrm67gmmsj87cj3"; depends=[]; }; ProbYX = derive2 { name="ProbYX"; version="1.1-0.1"; sha256="1arxk01c3aff7hfqjy1a398548jmz15hs70shh4a40qw2f9f995m"; depends=[rootSolve]; }; @@ -4062,14 +4136,15 @@ in with self; { ProfessR = derive2 { name="ProfessR"; version="2.4-3"; sha256="0df7ll7zv3kh5ygdcq9klzjy4g1knd9z0zv3whw5x3a19kkaaili"; depends=[RPMG]; }; ProfileLikelihood = derive2 { name="ProfileLikelihood"; version="1.3"; sha256="0yxcrxw3jb8bnwqh5f5d8bmm5jlkyxfld12zfyw3b1031zj1vh6i"; depends=[MASS nlme]; }; ProfoundData = derive2 { name="ProfoundData"; version="0.2.1"; sha256="1zqg821pv3i5nf76s7yppnmy13y14pj0l7rjhk50wlxrxdb53ibz"; depends=[DBI RNetCDF RSQLite settings sqldf zoo]; }; + ProgModule = derive2 { name="ProgModule"; version="0.1.0"; sha256="16im1ymprfak06vv0m8z0wccvszknzgg5br14q1048g8975rdj1h"; depends=[igraph infotheo maftools patchwork pathwayTMB survival survminer]; }; ProjectManagement = derive2 { name="ProjectManagement"; version="1.5.2"; sha256="04i1rz5dwgkgy6da12v3vhq3skqmnqlb3dry99hycjrfql0v4wsr"; depends=[igraph kappalab lpSolveAPI plotly triangle]; }; ProjectTemplate = derive2 { name="ProjectTemplate"; version="0.10.4"; sha256="08idly6fdxhv2rx5s4309snvzpd9rhd5bq9vq4rw13hnvnbdzyya"; depends=[digest tibble]; }; - ProjectionBasedClustering = derive2 { name="ProjectionBasedClustering"; version="1.2.1"; sha256="1l8j3n7d9vc7d5lb2fizq0aw8xh3ikh4ka4r3wwswk9a0mspjily"; depends=[deldir GeneralizedUmatrix geometry ggplot2 plotly Rcpp shiny shinyjs shinythemes vegan]; }; + ProjectionBasedClustering = derive2 { name="ProjectionBasedClustering"; version="1.2.2"; sha256="0v3w5bfmvc36bf19p1lp13p574xlbjq0gg43mwm598cnyqsw12xq"; depends=[deldir GeneralizedUmatrix geometry ggplot2 plotly Rcpp shiny shinyjs shinythemes vegan]; }; ProliferativeIndex = derive2 { name="ProliferativeIndex"; version="1.0.1"; sha256="03ipsbs8pfwr8wsx7j2y9c67ic4qcady7xpa47l8dr14ff63cfk7"; depends=[]; }; PrometheeTools = derive2 { name="PrometheeTools"; version="0.1.0"; sha256="09hrpybagl58vm22bhvpwb07s542hi4j15mqwwwyhi3dw0sn9xfy"; depends=[ggplot2]; }; PropCIs = derive2 { name="PropCIs"; version="0.3-0"; sha256="1ywzi88igzaj2wnbrqa08cy7pw886z2m0x3j7rk45rin9mgpfdfd"; depends=[]; }; PropClust = derive2 { name="PropClust"; version="1.4-7"; sha256="1xwm8a6m5j5rdry4gqjl2c6dx2kkzjz29nzmg4bjnk3y9xpcn8xn"; depends=[dynamicTreeCut fastcluster]; }; - PropScrRand = derive2 { name="PropScrRand"; version="1.1.1"; sha256="0p83pw1msngaiglwyv385s91r66whx6al9gkxs5bnmsn2a7bkrbl"; depends=[]; }; + PropScrRand = derive2 { name="PropScrRand"; version="1.1.2"; sha256="1710mw0nrr9x8r39i400l74inz0g8pcqdavqzlagvj27p8b1akzq"; depends=[]; }; ProteoBayes = derive2 { name="ProteoBayes"; version="1.0.0"; sha256="0cxfzr1wrz0n3v2avwq285kp39jgznmylfdinmx5rj69454r630h"; depends=[dplyr extraDistr ggplot2 magrittr mvtnorm rlang tibble tidyr]; }; Przewodnik = derive2 { name="Przewodnik"; version="0.16.12"; sha256="1aq80aqflfm1ypqa51h10mc3g0qdr651j6g1b7008k7h0ryq42gv"; depends=[PBImisc PogromcyDanych]; }; Pstat = derive2 { name="Pstat"; version="1.2"; sha256="17bqkaf9590jhiaamaafmvkqmy2aqkcfqhk8m4w35g58j48yk4yx"; depends=[]; }; @@ -4104,6 +4179,7 @@ in with self; { QF = derive2 { name="QF"; version="0.0.6"; sha256="0kvhvpj28293i65wh00jyz7fsbqk5q8x5i05bsk29n2rfrf627bl"; depends=[Rcpp RcppGSL]; }; QFASA = derive2 { name="QFASA"; version="1.2.0"; sha256="1dhnfr4f5ij3irkragyllfjqisgm27phk40c9i539vm6046sc2w2"; depends=[boot bootstrap Compositional compositions dplyr futile_logger gamlss gamlss_dist MASS mvtnorm Rcpp RcppEigen Rsolnp TMB vegan]; }; QFRM = derive2 { name="QFRM"; version="1.0.1"; sha256="02fixwxc97lgdp1ajhk9z12qj1cdl79vyl6q3jy37i6k7xh9mdfl"; depends=[]; }; + QGA = derive2 { name="QGA"; version="1.0"; sha256="1qwcm1x4qcfyrkwx16s1dgxnix2axh9w0qxwrv1j0iwdc8mp32g9"; depends=[]; }; QGameTheory = derive2 { name="QGameTheory"; version="0.1.2"; sha256="0h3qkb0zg6km3s89bjnv9503hgcng4wfywfy1x5dsbj5azs9hs5w"; depends=[dplyr R_utils RColorBrewer]; }; QGglmm = derive2 { name="QGglmm"; version="0.7.4"; sha256="0ghvicz4ia1180byj28lmg49889hqhb94g1jrkhm6hnzgqbjnfmd"; depends=[cubature]; }; QHOT = derive2 { name="QHOT"; version="0.1.0"; sha256="02z0n2jawd6m7bvyvpcy0j13p1c0zm036g62n56xva18qnq5c9lb"; depends=[]; }; @@ -4121,36 +4197,36 @@ in with self; { QTE_RD = derive2 { name="QTE.RD"; version="1.0.0"; sha256="0svm97qm08ma201layin6lmym737d1gykcvlbq9n8nycria4sdfh"; depends=[plotrix quantreg]; }; QTL_gCIMapping = derive2 { name="QTL.gCIMapping"; version="3.4"; sha256="17f2xmgklbi8kicv7v951zm3bf1q4bdx9lcfbxpac3i7xm985fgr"; depends=[data_table doParallel foreach glmnet lars MASS openxlsx qtl Rcpp readxl stringr]; }; QTL_gCIMapping_GUI = derive2 { name="QTL.gCIMapping.GUI"; version="2.1.1"; sha256="0a155vl869i3li2i67b89p056x50ycqp9yk0ll5g3fp3xcdl80zs"; depends=[data_table doParallel foreach glmnet MASS openxlsx qtl QTL_gCIMapping Rcpp shiny stringr]; }; - QTLEMM = derive2 { name="QTLEMM"; version="1.5.2"; sha256="18cj4xalgs8pjf3y6glaj66pgspv2vkcfc52r1rrc4qxirk1q49k"; depends=[gtools mvtnorm]; }; + QTLEMM = derive2 { name="QTLEMM"; version="1.5.4"; sha256="0ha8ivwpjvymg143fdmg0w5kp2yf18alk00iq7y5i4qxdyyhyjpw"; depends=[gtools mvtnorm]; }; QTLRel = derive2 { name="QTLRel"; version="1.14"; sha256="1brxlvqlcax0f5l0bnc9cirn2v6xwhb851cvzkwrgsxi4m7xn839"; depends=[gdata lattice]; }; QTOCen = derive2 { name="QTOCen"; version="0.1.1"; sha256="0wlbxk1rd56k02jf3pfzbx6xx5mmf6sb7gvds0067cvb7m42ghcr"; depends=[MatrixModels quantreg Rdpack rgenoud survival]; }; QUALYPSO = derive2 { name="QUALYPSO"; version="2.3"; sha256="1nbkbc5lcglrpp4k3jphdzqr9xl5kgdv6sg05ibdcwidn6bk3y5l"; depends=[expm MASS Rfast]; }; - QWDAP = derive2 { name="QWDAP"; version="1.1.17"; sha256="1yq2xm5a1im8g65j89d6xqfbknlrpfh9lpm1ggmn5fw8wq4519ni"; depends=[CORElearn pls Rcpp RcppEigen]; }; + QWDAP = derive2 { name="QWDAP"; version="1.1.18"; sha256="1i1g83k2fr0c7kchwpsyxxfhi6kvbdqg8caff9ly0crdzar5xrc4"; depends=[CORElearn pls Rcpp RcppEigen]; }; QZ = derive2 { name="QZ"; version="0.2-3"; sha256="14szpp8yv315wjn4d35l858bzkv2pd4s720ib921wsvpgn3xfx5d"; depends=[Matrix]; }; Qapprox = derive2 { name="Qapprox"; version="0.2.0"; sha256="0mv3xfy847lqh95mpccjiw5jjbml7dwrna7i16532sdqcxaq4m02"; depends=[]; }; - Qardl = derive2 { name="Qardl"; version="0.1.1"; sha256="1sb6xp8hm4rh30dfnw9n5x10hr3sd9p0cv98fr31kdaiqji0vglw"; depends=[dplyr MASS Matrix pbapply quantreg]; }; Qest = derive2 { name="Qest"; version="1.0.1"; sha256="0vl5nhnjijzqvk2s8l9rr6f7hqjh867w7b3w3j1b4kwzfpzsfcqc"; depends=[matrixStats pch survival]; }; Qindex = derive2 { name="Qindex"; version="0.1.5"; sha256="1186k9yapq6ax2y6pyk3pjhsdsnzifwv94mawgzw8fcsz7wq83q7"; depends=[matrixStats mgcv pracma rpart survival]; }; + Qindex_data = derive2 { name="Qindex.data"; version="0.1.1"; sha256="1h10qcp0yiga5yw5mvw2snp2y02bmi6z5q2s6i144w362vn5hxn8"; depends=[]; }; QoLMiss = derive2 { name="QoLMiss"; version="0.1.0"; sha256="00g1ykwlmc4w0bmzj0jg9ckr2bvkl8qcxd67wdc12alccqqd584v"; depends=[dplyr missMethods survival]; }; QregBB = derive2 { name="QregBB"; version="1.0.0"; sha256="0rihfd2542wpfv43115pkxh233ma1qwkwxivawqs9f4faypyi5mh"; depends=[quantreg]; }; Qtools = derive2 { name="Qtools"; version="1.5.9"; sha256="167c8mfj0if4j9m3rjbi1gnhwypq5ky297zyb437p42b3856qagi"; depends=[boot conquer glmx gtools MASS Matrix np numDeriv quantdr quantreg Rcpp RcppArmadillo]; }; QuClu = derive2 { name="QuClu"; version="1.0.1"; sha256="09fakiyj9kz9ac05jmis0zp9jmizvdyc8cid0js5xzm308dxnlsd"; depends=[]; }; QuESTr = derive2 { name="QuESTr"; version="0.1.1"; sha256="1vvvraqgy570dj86km4qpiax4a0zhfym94am0fn6ld43p3iixg02"; depends=[ggplot2 kernlab]; }; QuadRoot = derive2 { name="QuadRoot"; version="0.2.1"; sha256="1ixh4ikp8pqa7py4di9fgmi5rhjgsvh57j2f59g6xdcyl068c3g6"; depends=[]; }; - QuadratiK = derive2 { name="QuadratiK"; version="1.0.0"; sha256="1yn8hs2cpf6dsaqnva2k0l9i4g3ccmzg0vrn4xrynqz3ncrzikwy"; depends=[cluster clusterRepro doParallel foreach ggplot2 ggpp ggpubr MASS mclust moments movMF mvtnorm Rcpp RcppEigen rgl rlecuyer rrcov sn Tinflex]; }; + QuadratiK = derive2 { name="QuadratiK"; version="1.1.1"; sha256="0pjg0j0hb5v6gxlg4lv1ddrwbrvp91ah3rxm6y7mjclg3ff47g16"; depends=[cluster clusterRepro doParallel foreach ggplot2 ggpp ggpubr mclust moments movMF mvtnorm Rcpp RcppEigen rgl rlecuyer rrcov sn Tinflex]; }; Quandl = derive2 { name="Quandl"; version="2.11.0"; sha256="1bsba6blbcq0my8wm0qcy0qabbgx344gjljnjwaqfrqkjcphf5xs"; depends=[httr jsonlite xts zoo]; }; - QuantBondCurves = derive2 { name="QuantBondCurves"; version="0.2.0"; sha256="07rq5nhwn286aqk54pz3x2dq9d2kgszm0biyshjz8hvps9yismj2"; depends=[lubridate quantdates Rsolnp]; }; + QuantBondCurves = derive2 { name="QuantBondCurves"; version="0.3.0"; sha256="1w6zlf8wvfh4568aa0l9l3p502hjmj8lhnkagv6dqg332jz0ikhr"; depends=[lubridate quantdates Rsolnp]; }; QuantNorm = derive2 { name="QuantNorm"; version="1.0.5"; sha256="1hds9ybwsgnmcpa22vlmgdq02ilhn0c6a7z1qjiq4i5iqjd4gwf6"; depends=[]; }; QuantPsyc = derive2 { name="QuantPsyc"; version="1.6"; sha256="1dbj830p5837fiwa800nzsaf19lf95vc3n7jmds2q9v06mrz6syq"; depends=[boot dplyr MASS purrr]; }; QuantRegGLasso = derive2 { name="QuantRegGLasso"; version="1.0.0"; sha256="0jjjrkj45148s2rymvgzkqpbg2bw7nvf3851153qpl8kp13mxgr1"; depends=[ggplot2 Rcpp RcppArmadillo]; }; - QuantileGH = derive2 { name="QuantileGH"; version="0.1.5"; sha256="18qdrrlqhjlqnxvinf9kwizbpd06pvgniy5wjq74x1l63d7n2k6z"; depends=[ggplot2 goftest latex2exp mixtools rstpm2 scales sn tclust VGAM]; }; + QuantileGH = derive2 { name="QuantileGH"; version="0.1.7"; sha256="0zsdvvx567dq17b5n9rdx2qmnm0ph9qnvffmgh7n4csz0c1ca4xg"; depends=[fmx mixtools tclust TukeyGH77]; }; QuantileGradeR = derive2 { name="QuantileGradeR"; version="0.1.1"; sha256="1zwc6bg636gk8zll7wpznd3pzl611hcj2fmzp8b9505rra13p0g2"; depends=[]; }; QuantileNPCI = derive2 { name="QuantileNPCI"; version="0.9.0"; sha256="043lkg1pyaja7a4f9lmcwrvdjpfly2z378s15snwnxj8vb5pgr38"; depends=[]; }; QuantumOps = derive2 { name="QuantumOps"; version="3.0.1"; sha256="0gl1myf7q444imyvsjvxiaxaahf0n0bsggwbd0z3az73l6yf1gjh"; depends=[]; }; Quartet = derive2 { name="Quartet"; version="1.2.6"; sha256="1qrhjxqg3899kw58irnqs7sj6n9ixyx71gaf1whld8xpj89dsz7f"; depends=[ape Rcpp Rdpack Ternary TreeTools viridisLite]; }; - QuickJSR = derive2 { name="QuickJSR"; version="1.1.3"; sha256="0ccp7dx2jhlarfn48jc0mhci5kkj0r3ibh6rjnxswvp3yg2x2bgd"; depends=[jsonlite R6 Rcpp]; }; + QuickJSR = derive2 { name="QuickJSR"; version="1.2.2"; sha256="1vb8b591imq737zin77sh3icld87pqk5mssmn7ddzj45cn22z12i"; depends=[]; }; QurvE = derive2 { name="QurvE"; version="1.1.1"; sha256="0md97jgyl7lkq46zsl6svgdhyg95is92f8yn5szkaylfdb2cglg3"; depends=[doParallel dplyr drc DT foreach ggh4x ggnewscale ggplot2 ggpubr kableExtra knitr labeling magrittr minpack_lm plyr purrr RColorBrewer readxl rmarkdown scales shiny stringr tidyr]; }; - Qval = derive2 { name="Qval"; version="0.1.5"; sha256="1dkiz3ra3yf02i31xg0hpd2n90cl0484q1n0vav7vfc539jpx67v"; depends=[GDINA glmnet Matrix nloptr plyr]; }; + Qval = derive2 { name="Qval"; version="0.1.6"; sha256="134cahaarly5qbdycm0s52fkxfk0pylg5g3k9sq5y6law8yb5q7v"; depends=[GDINA glmnet Matrix nloptr plyr]; }; R_cache = derive2 { name="R.cache"; version="0.16.0"; sha256="14cja0d78mzipb94cwgdl00k5r7awjclzxl30c77j6jpc68l0lvq"; depends=[digest R_methodsS3 R_oo R_utils]; }; R_devices = derive2 { name="R.devices"; version="2.17.2"; sha256="15gcvhmqwqyl3n299l9znwcjri8d8vixwwv915162sfxabsylgj0"; depends=[base64enc R_methodsS3 R_oo R_utils]; }; R_filesets = derive2 { name="R.filesets"; version="2.15.1"; sha256="1qwxk3p56yq06nsdl0jwbw6j8r6qjakznsd3z63gnpsgkckfkx88"; depends=[digest R_cache R_methodsS3 R_oo R_utils]; }; @@ -4167,14 +4243,14 @@ in with self; { R2BEAT = derive2 { name="R2BEAT"; version="1.0.5"; sha256="02vxch3pszh3lv4z01da5g6d9zjnjv5cyxciiw4ina767lsk0rgk"; depends=[doParallel foreach glue sampling]; }; R2BayesX = derive2 { name="R2BayesX"; version="1.1-5"; sha256="1x3hv0dfkh4ywi47qkmk6wvfz07rp5riwnxcnn32jflwcdzscqva"; depends=[BayesXsrc colorspace mgcv]; }; R2DT = derive2 { name="R2DT"; version="0.2"; sha256="0hyisq6mij80v14sjspn9idd1h38sd1knbpd0dn2wy9k2w1fl0pk"; depends=[data_table devFunc plyr]; }; - R2HTML = derive2 { name="R2HTML"; version="2.3.3"; sha256="12qg9rp1j26h2f48dfg5k9jds26ycacv3f3ymk686ks43hd1hzja"; depends=[]; }; + R2HTML = derive2 { name="R2HTML"; version="2.3.4"; sha256="1a8yy9xf5gdh3s2rzmv5b28hhdqc5g34hygcrxn8drs0i2j97vdr"; depends=[]; }; R2MLwiN = derive2 { name="R2MLwiN"; version="0.8-9"; sha256="0zzvpsmcfvnr6v0dg5dbfz8sx2h2m6krkb0q8bxxlj552nn2qvgr"; depends=[broom coda digest doParallel foreach foreign lattice Matrix memisc R2WinBUGS texreg tibble]; }; R2OpenBUGS = derive2 { name="R2OpenBUGS"; version="3.2-3.2.1"; sha256="0689aqa034xkbyy46m3sjanjkxrii4ma1crm5qw5kaqbx7dg153c"; depends=[boot coda]; }; R2ROC = derive2 { name="R2ROC"; version="1.0.1"; sha256="0xmzsd5rbfidypkxcp8jf9afa7l4r70h627gcz4y4j688n110piw"; depends=[]; }; R2SWF = derive2 { name="R2SWF"; version="0.9-9"; sha256="0bd1lh8f16mvgvrzk080jpqajzl0fzmiq5d2f2k3lgf0hda0x4gl"; depends=[sysfonts]; }; R2WinBUGS = derive2 { name="R2WinBUGS"; version="2.1-22.1"; sha256="199qkp4ar0kkdf7a2fn9aq17253ss97mddaivydcywvbp50n53j3"; depends=[boot coda]; }; R2admb = derive2 { name="R2admb"; version="0.7.16.3"; sha256="1sv20hkgz3vvqkwzj7i2xn7sb8skzhdl7jnrk85m6zza65917f32"; depends=[coda lattice]; }; - R2jags = derive2 { name="R2jags"; version="0.7-1.1"; sha256="05qdhgf8cpkw51zw3krk6xvyb27h8wza1js371f6qig5gjl0xhfl"; depends=[abind coda R2WinBUGS rjags]; }; + R2jags = derive2 { name="R2jags"; version="0.8-5"; sha256="1k895xmlrq8k34s0yc06mjkay8gj2r80sfn4rpqql09j6vr1za3i"; depends=[abind coda R2WinBUGS rjags stringr]; }; R2sample = derive2 { name="R2sample"; version="1.1.0"; sha256="18v7i0h4jbnyd08c24sr8fydk209fp76hc2k7yivva616m5c4s2d"; depends=[ggplot2 microbenchmark Rcpp shiny]; }; R2ucare = derive2 { name="R2ucare"; version="1.0.2"; sha256="0940c9zw3fifs7m4hrx9aqv4d56q3263bl12lzk2mx2sfjp9rzlw"; depends=[RMark stringr]; }; R3port = derive2 { name="R3port"; version="0.2.5"; sha256="0vcn0qay1fxwvaa81jin0s5ly22sjriqavgy8x981xjzdxl5s5ww"; depends=[plyr reshape2 tinytex whisker]; }; @@ -4187,22 +4263,23 @@ in with self; { RABR = derive2 { name="RABR"; version="0.1.1"; sha256="1ckh0cw5xaqbzx8f7i6lsbspblfm0mmmadaifmln2rz3vr0hf1f4"; depends=[asd cubature data_table doParallel foreach ggplot2 multcomp multxpert survival]; }; RAC = derive2 { name="RAC"; version="1.5.5"; sha256="0ar2vbckfr26slbibbbcx409c8mw338x4apmxs7by6prnlwr6fpx"; depends=[matrixStats plotrix raster rstudioapi sp]; }; RADstackshelpR = derive2 { name="RADstackshelpR"; version="0.1.0"; sha256="0j2vazbji8xqb8xkd9jrpi10iqj30rvkdjfs4snavl9nsbra99yf"; depends=[ggplot2 ggridges gridExtra vcfR]; }; - RAFS = derive2 { name="RAFS"; version="0.2.3"; sha256="00s7k5liqklri0di2yawzilxcp047x0mq9l7grqr1dshhzyv2rms"; depends=[fastcluster MDFS splitTools]; }; + RAFS = derive2 { name="RAFS"; version="0.2.4"; sha256="02s4p7hsjm2znj5rcfrd2cqwynd03p8zbby8qxnfxr3hp5ggq7hr"; depends=[fastcluster MDFS splitTools]; }; RAINBOWR = derive2 { name="RAINBOWR"; version="0.1.35"; sha256="0cpjjnjfv53q0cwgia5fbay4n02z0q26jjr2p7c7rpykd382lr7c"; depends=[ape cluster expm gaston here htmlwidgets MASS Matrix MM4LMM optimx pbmcapply pegas R_utils Rcpp RcppEigen Rfast rrBLUP stringr]; }; - RALSA = derive2 { name="RALSA"; version="1.4.0"; sha256="0wj5qz8ar4z05vh7ldxdxzcnbpdn9sm41fz0fmfrrygcrvzmrqaa"; depends=[data_table DT foreign ggplot2 haven Hmisc openxlsx r_import rclipboard readr rstudioapi shiny shinydashboard shinyFiles shinyjs shinyWidgets stringi stringr]; }; + RALSA = derive2 { name="RALSA"; version="1.4.5"; sha256="1bg2s12803q2rayjmwbksm7ncpb6lbhhx9b6zj8gd12n8dxn0syy"; depends=[data_table DT foreign ggplot2 haven Hmisc openxlsx r_import rclipboard readr rstudioapi shiny shinydashboard shinyFiles shinyjs shinyWidgets stringi stringr]; }; RAMClustR = derive2 { name="RAMClustR"; version="1.3.1"; sha256="0mlizk0rga6mprp4n2ff12yamvfsfk9v46d94ra6ld0i2jxm84fd"; depends=[dynamicTreeCut e1071 fastcluster ggplot2 gplots httr jsonlite pcaMethods stringr webchem]; }; RAMP = derive2 { name="RAMP"; version="2.0.2"; sha256="0836fiycrsxiwdw7srz1rvsf639iqh2rk89gavx4kvn0i0sc8d2x"; depends=[]; }; RAMpath = derive2 { name="RAMpath"; version="0.5.1"; sha256="0dp5illypz3qdj2qmn47wy208mcjhkkwvw8yq2spzcsn55l8f0nx"; depends=[ellipse lavaan MASS]; }; RANKS = derive2 { name="RANKS"; version="1.1"; sha256="1c7khw2rxf88cycy81kqxyg7rzb9f8ns8n5x24zzjdvsws77fshq"; depends=[graph limma NetPreProc PerfMeas RBGL]; }; RANN = derive2 { name="RANN"; version="2.6.1"; sha256="10kid40w9w7vkz2hpcfkdpxr4afxzms5dzvfwr0sl5xynzgw76dj"; depends=[]; }; RAPTOR = derive2 { name="RAPTOR"; version="1.0.1"; sha256="1bj3xsl83mb8zwap8icywrfdld382fram79b0n14jbk1l87rj9r4"; depends=[mgcv]; }; - RAQSAPI = derive2 { name="RAQSAPI"; version="2.0.3"; sha256="0y9x5s1r5qfxx93wvcpa62s486d6yrrn56ks5wfgpx18jlm39q8d"; depends=[dplyr glue httr jsonlite lifecycle lubridate magrittr purrr rlang stringr tibble]; }; - RARfreq = derive2 { name="RARfreq"; version="0.1.4"; sha256="13cczkjjmmwn7mpbryldbhwa1jifmbwmd7czviq6qkqm8zl5ggr7"; depends=[data_table dplyr ggplot2 latex2exp magrittr patchwork Rdpack reshape2 tidyr]; }; + RAQSAPI = derive2 { name="RAQSAPI"; version="2.0.5"; sha256="0v3qahq1pcd8a12w9m65i6p6yna2azqjkirlkfqdazscl2n8g2vp"; depends=[dplyr glue httr2 lifecycle lubridate magrittr purrr rlang stringr tibble]; }; + RARfreq = derive2 { name="RARfreq"; version="0.1.5"; sha256="05yb1hkhqq5x4q34z6kvdd6s8iy90528zypbc2pjhhb264v5k8qd"; depends=[data_table dplyr ggplot2 latex2exp magrittr patchwork Rdpack reshape2 tidyr]; }; + RARtrials = derive2 { name="RARtrials"; version="0.0.1"; sha256="03hfbr08f4wbb8apfdqg32118615zzyaihvriqsfr7q2qxy4byla"; depends=[pins Rdpack]; }; RAT = derive2 { name="RAT"; version="0.3.1"; sha256="0234z9a1aqhdfwm6k3g8vw88dwx9n1d1mnnxl1y5qslv429kf23v"; depends=[ggplot2 mapproj stringr]; }; RATest = derive2 { name="RATest"; version="0.1.10"; sha256="019jcwb62w7da2hfys7xhfdxcywj6qn9pd2x6l61704n7bjj0s20"; depends=[ggplot2 gridExtra quantreg]; }; RAdwords = derive2 { name="RAdwords"; version="0.1.18"; sha256="1c3m2j2cf1s51p783rdng5ns913bv7rbjc1vpmrmsxg2kf5f6qyq"; depends=[RCurl rjson]; }; RApiDatetime = derive2 { name="RApiDatetime"; version="0.0.9"; sha256="1s8dmv8phzr635z7l1af39jn5i3zs3hbnfij4m0rjs3mrq4fckpy"; depends=[]; }; - RApiSerialize = derive2 { name="RApiSerialize"; version="0.1.2"; sha256="02k0l8bi849b2102ysb102xky4p84i9v2r4w6fab7bgf32wvph4w"; depends=[]; }; + RApiSerialize = derive2 { name="RApiSerialize"; version="0.1.3"; sha256="0azl8qykls635qxd4lcqmznvpqb5ldy6hqx3p7icqamvx9ckfhcz"; depends=[]; }; RAppArmor = derive2 { name="RAppArmor"; version="3.2.4"; sha256="1dg9ykmgb2bzqyh08jhfm1wv6zniqg6p49k8mfgxb534sqv5wdn4"; depends=[unix]; }; RAthena = derive2 { name="RAthena"; version="2.6.1"; sha256="1zncmkx93c28z0xf4n5rdc7fzlrdqw3x9ab2ci07f00gjf9gwkf1"; depends=[data_table DBI reticulate uuid]; }; RBE3 = derive2 { name="RBE3"; version="1.1"; sha256="1spk6nxr9r5mim3lhps55zwdj22yqxmm01h19p87yravbnjq99wc"; depends=[gtools pracma]; }; @@ -4222,7 +4299,7 @@ in with self; { RCGLS = derive2 { name="RCGLS"; version="1.0.3"; sha256="12mmfs91fmhdxdxr7q16hnjlg7bz2bbkf8chld4cyf8clnflzvsj"; depends=[ncdf4 raster RCurl sp]; }; RCLabels = derive2 { name="RCLabels"; version="0.1.10"; sha256="0nb1032mlqbs9aslq4hsmahfn3bp1qvg26pfbgk784rj64ibd6gz"; depends=[assertthat Hmisc magrittr purrr]; }; RCMinification = derive2 { name="RCMinification"; version="1.2"; sha256="1bdgc7rwkdkimp4k1p5ah26nbp1ic09kyyx6xily260xq7m31g1w"; depends=[KernSmooth locpol]; }; - RCPA = derive2 { name="RCPA"; version="0.2.1"; sha256="0lb0c4zdksyhx71xs9kzcsi9l69a4g1ig4cd8wyhln86pw0qpdxz"; depends=[AnnotationDbi Biobase BiocManager DESeq2 dplyr edgeR GEOquery ggnewscale ggpattern ggplot2 ggrepel graph httr IRdisplay jsonlite limma rlang RobustRankAggreg scales stringr SummarizedExperiment tidyr]; }; + RCPA = derive2 { name="RCPA"; version="0.2.2"; sha256="116qb2zqlw6jsxz5mn7s35nv3d27kzpfjmnqk3whh9r91dkdhfyk"; depends=[AnnotationDbi Biobase BiocManager DESeq2 dplyr edgeR GEOquery ggnewscale ggpattern ggplot2 ggrepel graph httr IRdisplay jsonlite limma rlang RobustRankAggreg scales stringr SummarizedExperiment tidyr]; }; RCPA3 = derive2 { name="RCPA3"; version="1.2.1"; sha256="1xcrlnd41r9f7p4ql258hjh81alzah1p19pk9kady0ardp0xq1zz"; depends=[beepr car descr haven Hmisc knitr lmtest survey weights]; }; RCRnorm = derive2 { name="RCRnorm"; version="0.0.2"; sha256="1mz1jb7mc9c47hbk9flnddny4zir6r2k5qis30iynwqny521l6ln"; depends=[truncnorm]; }; RCSF = derive2 { name="RCSF"; version="1.0.2"; sha256="1hjl7qsdgcddn3nh2likndhfhnw9gj3453xqq96gddgb1y0m3bh1"; depends=[Rcpp]; }; @@ -4254,20 +4331,20 @@ in with self; { RDStreeboot = derive2 { name="RDStreeboot"; version="1.0"; sha256="10ry8rna450j389cplvyvgwljxa8lli7licwdin64b1kyzy2cdn7"; depends=[]; }; RDieHarder = derive2 { name="RDieHarder"; version="0.2.6"; sha256="1q0b98h1ksvk3v1m3kp1x7jnvhpzxrsiyriq2nfkybh72x1p23gl"; depends=[]; }; RDnp = derive2 { name="RDnp"; version="1.3"; sha256="1a10afwn41c0sd35i2hywg79gyf55nd212rfq5pv5inqdrr7kxym"; depends=[cellWise MASS]; }; - RDocumentation = derive2 { name="RDocumentation"; version="0.8.2"; sha256="0qdn3c5xbjyrhk56wfch50xpyyfd4f79hs0v00cqk9iwsnjlwmb5"; depends=[httr proto rjson]; }; RDota2 = derive2 { name="RDota2"; version="0.1.6"; sha256="0fjsgg4dmzw2xwrf8jxq0f2d7f78bf67bl3ms5qcjk9kskfnymag"; depends=[httr jsonlite]; }; REAT = derive2 { name="REAT"; version="3.0.3"; sha256="1bnmk74xdxckni6alp5kslsb3w7jlnfwc27mi5y3lry7zrvxi6lk"; depends=[]; }; REBayes = derive2 { name="REBayes"; version="2.54"; sha256="1kg105jnc7hjxihvrjcfklz6i29kznz9aqh6303v9v6hfmy6a094"; depends=[lattice Matrix]; }; RECA = derive2 { name="RECA"; version="1.7"; sha256="1xikj20flqajpkw4wyynmqd1pafbylzwfrmc8bz9pqgggjjhrqql"; depends=[]; }; - REDCapCAST = derive2 { name="REDCapCAST"; version="24.2.1"; sha256="0zd2lnr6gzjf1zmrzb0l0ynmvpa842lf3kaz7rscmjkdr8p6sjg1"; depends=[dplyr haven keyring openxlsx2 purrr readr REDCapR rsconnect shiny tidyr tidyselect]; }; - REDCapDM = derive2 { name="REDCapDM"; version="0.9.8"; sha256="1xj0arzy3d01wlyyyl7ycbrp5drd06la76frd4r25aa2rj41vn2d"; depends=[cli dplyr forcats janitor labelled magrittr openxlsx purrr REDCapR rlang stringi stringr tibble tidyr tidyselect]; }; + REDCapCAST = derive2 { name="REDCapCAST"; version="24.6.1"; sha256="18s85ryg5mr7cv1j4938ax7v3b8fsrbaaa5lv191h0ixwkyz5cp9"; depends=[assertthat dplyr haven keyring openxlsx2 purrr readODS readr REDCapR shiny tidyr tidyselect zip]; }; + REDCapDM = derive2 { name="REDCapDM"; version="0.9.9"; sha256="1xpl5n046cj7r8rlkffmsfdffs0q0av2c13zw5v6agr265y3d33j"; depends=[cli dplyr forcats janitor labelled magrittr openxlsx purrr REDCapR rlang stringi stringr tibble tidyr tidyselect]; }; REDCapExporter = derive2 { name="REDCapExporter"; version="0.2.2"; sha256="0w7c1y58vnkbd11ndkcn5s5c54pmvyqhflwgg2q6dc3n671yp9wx"; depends=[curl data_table keyring lubridate]; }; REDCapR = derive2 { name="REDCapR"; version="1.1.0"; sha256="02d41mbplc7fb0yf6sf62fzfzai95vjqxhz2hkz7135w17s31j8r"; depends=[checkmate dplyr httr jsonlite magrittr readr rlang tibble tidyr]; }; - REDCapTidieR = derive2 { name="REDCapTidieR"; version="1.0.0"; sha256="0mv9llh0xgyzh1iqa57i83vq1ijglcmnymk0m4zy34b01q4yjkha"; depends=[checkmate cli dplyr formattable lobstr lubridate purrr REDCapR rlang stringi stringr tibble tidyr tidyselect]; }; + REDCapTidieR = derive2 { name="REDCapTidieR"; version="1.1.1"; sha256="0a7q2mfnjfyfkdafvvl7y69c52qh8wsqrygv77wnrjl4kjf80gwv"; depends=[checkmate cli dplyr formattable lobstr lubridate pillar purrr readr REDCapR rlang stringi stringr tibble tidyr tidyselect vctrs]; }; REDI = derive2 { name="REDI"; version="1.0.0"; sha256="0i7gfsqyjhkwh6wxzzznai2qyfk3njim992njp0djd6lpbj96mdw"; depends=[dplyr ggplot2 lubridate magrittr rlang tibble tidyr]; }; REEMtree = derive2 { name="REEMtree"; version="0.90.5"; sha256="1iapqwhis2vz19c3mivmwpj0nlgzb8fm3j2w060ypydwzmar0qmj"; depends=[nlme rpart]; }; REFA = derive2 { name="REFA"; version="0.1.0"; sha256="1h6p8m1nyk6a1j6ffgjrx5sn39r1jaavx1ya367k6lkxjp3skf8w"; depends=[mvtnorm]; }; REGENT = derive2 { name="REGENT"; version="1.0.6"; sha256="1f2sjqkhw3rbmwbcmx7l7imj696kblisi8y3fz77xygbcbxa6rmq"; depends=[]; }; + REMLA = derive2 { name="REMLA"; version="1.1"; sha256="1j094h38047vlbql8vvlbbdnwxqpw7vnvc08qa2c95jqw8kvhwa6"; depends=[geex GPArotation]; }; REPLesentR = derive2 { name="REPLesentR"; version="0.4.1"; sha256="0rwd7hxk12f4f1kpj6sl424yhbxi3h9dz6km5awijazmgv95carz"; depends=[dat knitr modules]; }; REPPlab = derive2 { name="REPPlab"; version="0.9.6"; sha256="1hiv6fz2s7dwjixnlqckvpa4dns8wannpinjjpxs3fcskgxmkgrz"; depends=[lattice LDRTools rJava]; }; REPPlabShiny = derive2 { name="REPPlabShiny"; version="0.4.2"; sha256="0mm815pf90xqp1fgz955cdgc9k72kpq8zlpfa18pb478c02kvwg3"; depends=[DT REPPlab shiny]; }; @@ -4335,10 +4412,10 @@ in with self; { RImpact = derive2 { name="RImpact"; version="1.0"; sha256="010bdq6r2fv4rs78kl1ixnw1di39v90ckh8bblzi0wv4adlbaza4"; depends=[]; }; RInSp = derive2 { name="RInSp"; version="1.2.5"; sha256="06kpr2iq1xcsfajv9xph4mqazvdp5r5d2zs1lzp0bmsyi3xsd3rb"; depends=[]; }; RInside = derive2 { name="RInside"; version="0.2.18"; sha256="0dmpdi39dv5a0i7v507cbm2vr2d0cl310n9w1qz66r53y3q18l40"; depends=[Rcpp]; }; - RItools = derive2 { name="RItools"; version="0.3-3"; sha256="1m9isda5alzycill707r2ayz9mcdsyhxnpy6i6nmzgrsxb9f421a"; depends=[abind dplyr ggplot2 SparseM survival svd tibble tidyr xtable]; }; + RItools = derive2 { name="RItools"; version="0.3-4"; sha256="1msjxrlil82sa8xm705zi5kqy74nq8jndgm7aq0skn9ms6w88xh4"; depends=[abind dplyr ggplot2 SparseM survival svd tibble tidyr xtable]; }; RJDBC = derive2 { name="RJDBC"; version="0.2-10"; sha256="06b2gw76jwmm3lw3knmn6slc6824d4gzry94n96d97ii4fm4gwrp"; depends=[DBI rJava]; }; RJDemetra = derive2 { name="RJDemetra"; version="0.2.6"; sha256="17wfzv3gknx2x90bhlq09yk6wggrq67ylbxn6biiy1qrpipyw4jj"; depends=[rJava]; }; - RJSDMX = derive2 { name="RJSDMX"; version="3.1-0"; sha256="0rbvm8g5az45rh371vg6ammyl3m960hiziajixy52avgw8zbashr"; depends=[rJava zoo]; }; + RJSDMX = derive2 { name="RJSDMX"; version="3.3-0"; sha256="08llfpyj85nnqn07vw3i7hjs3hn84s8grg6cjjqynn38kw1849ry"; depends=[rJava zoo]; }; RJSONIO = derive2 { name="RJSONIO"; version="1.3-1.9"; sha256="1kiy36hjzh5if5npqv5mdvkr5pdfg3ibj178gr0kz1r81i5h6wzi"; depends=[]; }; RJSplot = derive2 { name="RJSplot"; version="2.7"; sha256="02q5isc137nx7qil2p3903xfsjwk54507rs72dfaiy6a8scys5j9"; depends=[]; }; RJafroc = derive2 { name="RJafroc"; version="2.1.2"; sha256="1immjb2313ss7pc61m3y59h6m3i0257lhvrkkvhrprl9jsyanfca"; depends=[bbmle binom dplyr ggplot2 mvtnorm numDeriv openxlsx Rcpp readxl stringr]; }; @@ -4350,7 +4427,7 @@ in with self; { RKHSMetaMod = derive2 { name="RKHSMetaMod"; version="1.1"; sha256="1h8gqqfmlrzyj4n997yn13vqpaw2kwzl45gscy3fdhskzmyg0ss3"; depends=[Rcpp RcppEigen RcppGSL]; }; RKUM = derive2 { name="RKUM"; version="0.1.1.1"; sha256="0w26ybl8jp5b90lfxj4710bkhb6qchnsg6smvwrry2225x3kfk7v"; depends=[]; }; RKelly = derive2 { name="RKelly"; version="1.0"; sha256="0mkpc95j67rg2gcj2fc4w8kv4v31cpiyvh660y8kc2fjr5q4aj3l"; depends=[]; }; - RKorAPClient = derive2 { name="RKorAPClient"; version="0.8.0"; sha256="13231pc2irg2jzpna6zklj1pj5jfzvrp5dp3anl8iskcl81p78mg"; depends=[broom curl dplyr ggplot2 highcharter httr jsonlite keyring lubridate magrittr PTXQC purrr R_cache stringr tibble tidyr urltools]; }; + RKorAPClient = derive2 { name="RKorAPClient"; version="0.8.1"; sha256="1p3i2h5lw288vgqj6z5xiv0y0f73pwzvi7wlmbvf6i7adr3qcdg6"; depends=[broom curl dplyr ggplot2 highcharter httr jsonlite keyring lubridate magrittr PTXQC purrr R_cache stringr tibble tidyr urltools]; }; RLRsim = derive2 { name="RLRsim"; version="3.1-8"; sha256="06i4slc7fj8xifq20i1vqfadfw2p81b0kfzga60139hnryz1zpva"; depends=[lme4 mgcv nlme Rcpp]; }; RLT = derive2 { name="RLT"; version="3.2.6"; sha256="0s2bb8cdvc5ab2n5xxi76c5szgizwbcy21z6762hpqms4g2yhvc6"; depends=[]; }; RLeafAngle = derive2 { name="RLeafAngle"; version="1.0"; sha256="1anks22hn6qpac556p99kilkhc80h572dvcyz3wj1nqffdrhgrh3"; depends=[]; }; @@ -4372,17 +4449,17 @@ in with self; { RMOPI = derive2 { name="RMOPI"; version="1.1"; sha256="0jjli73b1xinrkq0fndfaan1mgf6yb29skqvva4lib0zgd8p1v21"; depends=[fPortfolio ggplot2 lubridate MASS PerformanceAnalytics rugarch tibble timeDate timeSeries TTR xts]; }; RMPSH = derive2 { name="RMPSH"; version="1.1.1"; sha256="0jffp8942ydwain23kvy7q6avpxxsb77jj1mg4bq43fwgfc9nqjy"; depends=[Rcpp]; }; RMSD = derive2 { name="RMSD"; version="0.1.0"; sha256="0n6qcy8biswjsqhhcmahbn09xmnlgaa4hjlngh3kqran91p7c3i0"; depends=[]; }; - RMSDp = derive2 { name="RMSDp"; version="0.1.0"; sha256="12yfjs66w9d1i9yir731nk7038rg7b77m05fjs9x7a5cs9001azg"; depends=[doParallel foreach]; }; + RMSDp = derive2 { name="RMSDp"; version="0.1.1"; sha256="1s52hj8b12r2p6a6b069i7accnf8gvxr3nzb5dps1kpsncvhlpk3"; depends=[doParallel foreach]; }; RMSNumpress = derive2 { name="RMSNumpress"; version="1.0.1"; sha256="1y86dpa8kpq2bkvl90qwghxrnll5h3y9ycyvmamm4kd7ivy59sxi"; depends=[Rcpp]; }; RMSS = derive2 { name="RMSS"; version="1.1.1"; sha256="18hm626yr3xrsi9spzr42y9pf547xdx7byqq15bvh9f04qaalck3"; depends=[cellWise Rcpp RcppArmadillo robStepSplitReg robustbase srlars]; }; RMT4DS = derive2 { name="RMT4DS"; version="0.0.1"; sha256="05fwhd36lvi21gr5nz8mgxk5qzw4vxkrgw499p11aa9qhcn8xq4g"; depends=[lpSolve MASS mpoly nleqslv pracma quadprog rARPACK RMTstat rootSolve]; }; RMTL = derive2 { name="RMTL"; version="0.9.9"; sha256="1wyv9l1xgdm4s8ibjw3kwfsr77hxkxj80cgvkfv4mdir0bxm84b4"; depends=[corpcor doParallel foreach MASS psych]; }; RMThreshold = derive2 { name="RMThreshold"; version="1.1"; sha256="0wkc42vcggib002ad6ch43h6avpdgl12szrrrfd2p0wl72cwn5n1"; depends=[Matrix png]; }; RMTstat = derive2 { name="RMTstat"; version="0.3.1"; sha256="1r1a2sdqv64m9cpm2pz6r8abf7l810126ayd8iq3gx86c7bjfj5v"; depends=[]; }; - RMVL = derive2 { name="RMVL"; version="1.0.0.1"; sha256="199jsf82sbbzh6nn6ykmvqc1ad8wcm36qhfav2ggp1zrdy5vwhmq"; depends=[]; }; + RMVL = derive2 { name="RMVL"; version="1.1.0.0"; sha256="1fypvlg8qi4kn3awii244vqcn9zzsci5bqv8ywpnfigph26din6f"; depends=[]; }; RMaCzek = derive2 { name="RMaCzek"; version="1.5.1"; sha256="1zbpwhfa9mb55yglf4kgvch3hg7pvsfga4kpq45lz1cbs9454mzw"; depends=[e1071 ecp GA RColorBrewer seriation]; }; RMallow = derive2 { name="RMallow"; version="1.1"; sha256="1s6a3347739rfc8rrh2773b278gcbp8hf5j5psm61fz7bavy9gcj"; depends=[combinat]; }; - RMariaDB = derive2 { name="RMariaDB"; version="1.3.1"; sha256="0a39n1pgpxhq095bz689fxar68vvy5hypxym1d1ric0s8vs2l6vd"; depends=[bit64 blob cpp11 DBI hms lubridate plogr rlang]; }; + RMariaDB = derive2 { name="RMariaDB"; version="1.3.2"; sha256="0a38hbc9nc25x9a8z91wc24h4llmyhjim6vavmwrx2r14c3fz1vw"; depends=[bit64 blob cpp11 DBI hms lubridate plogr rlang]; }; RMark = derive2 { name="RMark"; version="3.0.0"; sha256="0nrh55rmfkrncpc58hranjww37dp8qrngkcazs5nmznw8r10z8h8"; depends=[coda matrixcalc msm]; }; RMediation = derive2 { name="RMediation"; version="1.2.2"; sha256="16zw8ic8h2q1qg627ddaxmr9dvj7ckdljbzfgwq557nxc2fgk1v2"; depends=[doParallel e1071 foreach iterators lavaan MASS modelr OpenMx stringr]; }; RMixpanel = derive2 { name="RMixpanel"; version="0.7-1"; sha256="1xwmmfvky49n1l0w3kwcyaf2h4rhzz4k5icjwvpc90fqk8sxib6a"; depends=[base64enc jsonlite RCurl uuid]; }; @@ -4393,7 +4470,6 @@ in with self; { RNAmf = derive2 { name="RNAmf"; version="0.1.2"; sha256="0hshkb5dhfpvgwpcp7a1rlp27a78lp48v7zsciw1lmga2igq5x42"; depends=[doParallel foreach lhs plgp]; }; RNAseqNet = derive2 { name="RNAseqNet"; version="0.1.5"; sha256="09jqgj1wwwxhk6xkfhkwzkbj0byk3441wa4kj4nzgwzv0qw6inds"; depends=[ggplot2 glmnet hot_deck igraph PoiClaClu]; }; RNAseqQC = derive2 { name="RNAseqQC"; version="0.1.4"; sha256="0f9k3ba2w75sjywngmvp7g10837wx65v112inpag3rplk9ljahvp"; depends=[AnnotationFilter AnnotationHub circlize ComplexHeatmap cowplot DESeq2 dplyr ensembldb gghighlight ggplot2 ggpointdensity ggrepel ggsci magrittr matrixStats patchwork purrr RColorBrewer stringr SummarizedExperiment tibble tidyr tidyselect vsn]; }; - RNAsmc = derive2 { name="RNAsmc"; version="0.8.0"; sha256="0lssw4qwcsdwcd3chkb1kslqh7yn25prl1npp1464nvmvz9yqdwm"; depends=[circlize RRNA]; }; RNCBIEUtilsLibs = derive2 { name="RNCBIEUtilsLibs"; version="0.9"; sha256="1h1ywx8wxy6n2rbpmjbqw4c0djz29pbncisd0mlbshj1fw226jba"; depends=[rJava]; }; RNCEP = derive2 { name="RNCEP"; version="1.0.10"; sha256="19ja7pcp7ajwhqhqw92pdmvxzyjc4kw3943pllpx47s1zvi6dmci"; depends=[abind fields maps RColorBrewer sp tgp]; }; RND = derive2 { name="RND"; version="1.2"; sha256="1rl5apgw43c841z0lapi9z2jn979dvqh4x1qkqx1ad77zcq87c85"; depends=[]; }; @@ -4404,17 +4480,17 @@ in with self; { RNentropy = derive2 { name="RNentropy"; version="1.2.3"; sha256="1kflx1i01ddq803i0vj79zfjs9y0sl8dzra9j5x84m6wcjbn71kl"; depends=[]; }; RNetCDF = derive2 { name="RNetCDF"; version="2.9-2"; sha256="0cdksiaai9wc4dyk3k01f9q9ki19r94p77rwpy4kr55hvwnrqx8m"; depends=[]; }; RNetLogo = derive2 { name="RNetLogo"; version="1.0-4"; sha256="1z7jp454k197c0zbkn64zmf25wadkiznv3w2csgiz917cbx6xcn1"; depends=[igraph rJava]; }; - RNewsflow = derive2 { name="RNewsflow"; version="1.2.7"; sha256="08jyj57y20a156dhpwn83v27lgc57yv189qrlsy5qn48jzfdb77h"; depends=[data_table igraph Matrix quanteda Rcpp RcppEigen RcppProgress scales stringi wordcloud]; }; + RNewsflow = derive2 { name="RNewsflow"; version="1.2.8"; sha256="08qb0vh2j1v13wqsrmklh6d4ln7ipsy962cwnlr86j0r2bscrqgy"; depends=[data_table igraph Matrix quanteda Rcpp RcppEigen RcppProgress scales stringi wordcloud]; }; RNifti = derive2 { name="RNifti"; version="1.6.1"; sha256="0wn06fnq5c7f0vwakryb75vzkjh03dqz2z57lgmn68hwgssnpalc"; depends=[Rcpp]; }; - RNiftyReg = derive2 { name="RNiftyReg"; version="2.8.1"; sha256="0k5qqkn2jnsrlb2j99lsy1v4dymrs2xjxyrhvpnxhdx7fyghhj64"; depends=[ore Rcpp RcppEigen RNifti]; }; + RNiftyReg = derive2 { name="RNiftyReg"; version="2.8.2"; sha256="0jrb1j8hl25lby2ikpvmmrxq39plx3r6qmrn0bnzbmyvbb5x1vfq"; depends=[ore Rcpp RcppEigen RNifti]; }; ROAuth = derive2 { name="ROAuth"; version="0.9.6"; sha256="0vhsp8qybrl94898m2znqs7hmlnlbsh8sm0q093dwdb2lzrqww4m"; depends=[digest RCurl]; }; ROCFTP_MMS = derive2 { name="ROCFTP.MMS"; version="1.0.0"; sha256="022cz5vh79c50r31rxn5fjghl65wn1ns8xdgq3b05hjf9psjvg4x"; depends=[vctrs]; }; ROCR = derive2 { name="ROCR"; version="1.0-11"; sha256="0amvvrkiflmr3qygrsgrsja4gaf2v6r6h6i2bgpsm8r069vmlf2p"; depends=[gplots]; }; ROCSI = derive2 { name="ROCSI"; version="0.1.0"; sha256="0bj1f62j2b39whm0grl1xvzkwi3jlrzpgzm77vskgyhaqrk17j9z"; depends=[glmnet MASS]; }; ROCaggregator = derive2 { name="ROCaggregator"; version="1.0.1"; sha256="1l53z1xz5ww0bdd3pcmscmm4ypg0fdl4a03vv8ya2jk0zzlndlnq"; depends=[magrittr]; }; - ROCit = derive2 { name="ROCit"; version="2.1.1"; sha256="0sd6ckh7k8aqwhzzp3qff6g7d03klbr0mbp403pib3823c8pqa55"; depends=[]; }; + ROCit = derive2 { name="ROCit"; version="2.1.2"; sha256="17s7wi248vj6wbcxb6z0fdsw8bijjxva4sldlqcz4m73ccnrdikf"; depends=[]; }; ROCket = derive2 { name="ROCket"; version="1.0.1"; sha256="1p5b1408fdq8z64b7ihwcdxprg5rfiq4z5annxzvmizzr6qwn8qa"; depends=[data_table]; }; - ROCnReg = derive2 { name="ROCnReg"; version="1.0-8"; sha256="08dklrd4ym60h3s5s88g9bv1adi8d6fxnnw2ap9870a1h0a7dk7g"; depends=[lattice MASS Matrix moments nor1mix np pbivnorm spatstat spatstat_geom]; }; + ROCnReg = derive2 { name="ROCnReg"; version="1.0-9"; sha256="149iq8i67qmdy6a65b4zw03f1sha8dbnirqw24in1kar3m5zg9hn"; depends=[lattice MASS Matrix moments nor1mix np pbivnorm spatstat_univar]; }; ROCpsych = derive2 { name="ROCpsych"; version="1.3"; sha256="0fcrhhxmvrrchbswb94liahbgz5pfhs86fbj0vby7vnakrhngh7v"; depends=[pROC reportROC]; }; RODBC = derive2 { name="RODBC"; version="1.3-23"; sha256="0fqgbs2zanq7xjl252s1fpqivqz4ll23nnf74122kcxgq1dd3k8m"; depends=[]; }; RODBCDBI = derive2 { name="RODBCDBI"; version="0.1.1"; sha256="0jkcc1lm8drsx1pkfj5h6rlbr98cgpvbf9ndzdwr048f3s8gd26i"; depends=[DBI RODBC]; }; @@ -4453,7 +4529,7 @@ in with self; { ROptimus = derive2 { name="ROptimus"; version="3.0.0"; sha256="1sc65dzpgd12wjqbbhzkhj9p09ynd4gj9icminz0yrr9igzw2z2j"; depends=[doParallel foreach iterators]; }; ROracle = derive2 { name="ROracle"; version="1.3-1.1"; sha256="1k5w6fi1f83mhlc8hx6y305llcwxl22h6lpkib1yvm4557k1c7zz"; depends=[DBI]; }; RPANDA = derive2 { name="RPANDA"; version="2.3"; sha256="12cah5vw9jcpnprnfhqwdh11fkn68djzgvdv2hr23yppa8nfn9zc"; depends=[ape BB bipartite cluster coda deSolve fields fpc geiger glassoFast GUniFrac igraph Matrix mvMORPH mvtnorm ParallelLogger phangorn phytools picante pracma pspline pvclust R_utils raster RColorBrewer Rmpfr TESS vegan]; }; - RPDTest = derive2 { name="RPDTest"; version="0.0.1"; sha256="1irj2ldd4if4l2wkz5slwl7441mav3igy1pmg62cxkpxk1sggbfs"; depends=[doParallel foreach]; }; + RPDTest = derive2 { name="RPDTest"; version="0.0.2"; sha256="0xdb68nxn25did26a39x6s7sch7g2qdl7f15qli2h9l9irlh8zqd"; depends=[doParallel foreach]; }; RPEGLMEN = derive2 { name="RPEGLMEN"; version="1.1.2"; sha256="0rbwxdh252vfx6qnplqqgmawpfk3naksi4wx11g1h7aj68cv8xjw"; depends=[Rcpp RcppEigen RPEIF]; }; RPEIF = derive2 { name="RPEIF"; version="1.2.4"; sha256="002f8753gfqx1ddcb60hz7xy6l19zvp3d3arackkqjh26zcw1paj"; depends=[RobStatTM xts zoo]; }; RPESE = derive2 { name="RPESE"; version="1.2.5"; sha256="157xvfa6m4vii92fac8xbhnah7np3jvd1y1y7ryw5c80yfbdhf0y"; depends=[boot RobStatTM RPEGLMEN RPEIF xts zoo]; }; @@ -4466,7 +4542,8 @@ in with self; { RPPanalyzer = derive2 { name="RPPanalyzer"; version="1.4.9"; sha256="1lw28cfi397klxxhs97dwzsfk7ykggbh4p82yg73sq6yq3liha1a"; depends=[Biobase gam ggplot2 gplots Hmisc lattice limma quantreg]; }; RPhosFate = derive2 { name="RPhosFate"; version="1.0.4"; sha256="1gmnnvihxg6j83w4qgrrx61fz4p9r145qxs2qcscrs1q8bzlvw9k"; depends=[checkmate raster Rcpp RcppArmadillo spatstat_geom yaml]; }; RPostgreSQL = derive2 { name="RPostgreSQL"; version="0.7-6"; sha256="0b1dmx5pcd4v1xg25ihxilkga3zdblb1xy896ik5fdkaidq3jn9q"; depends=[DBI]; }; - RPostgres = derive2 { name="RPostgres"; version="1.4.6"; sha256="1ld03r9rzfxx6gzy3yn8jhzp9sp2qd9wydpxz955ggjxwdklpvnr"; depends=[bit64 blob cpp11 DBI hms lubridate plogr withr]; }; + RPostgres = derive2 { name="RPostgres"; version="1.4.7"; sha256="0939ysl9m35aknnh3xk92xxymk1g0xqnjb2khq55m8nq7gcg3l9x"; depends=[bit64 blob cpp11 DBI hms lubridate plogr withr]; }; + RPregression = derive2 { name="RPregression"; version="0.1.0"; sha256="098c798jiafbx12jas98r9118fnq0n963ivvphiif58yv2hf0iqz"; depends=[ggplot2 stargazer]; }; RPresto = derive2 { name="RPresto"; version="1.4.6"; sha256="1q8c3h328iwscnayxj8qc71s2hkqdqwnpf38kn3zz3ks66qzjf8c"; depends=[bit64 DBI dbplyr dplyr httr jsonlite lifecycle lubridate openssl progress purrr rlang stringi tibble vctrs]; }; RProbSup = derive2 { name="RProbSup"; version="3.0"; sha256="1z53zgx26fwfhb1vxad0l51v34y2lsplhwbjaf4r44rngdaw9h5n"; depends=[]; }; RProtoBuf = derive2 { name="RProtoBuf"; version="0.4.22"; sha256="0zldxpc1nmwpv3ngrqgjp1pyhki0z7gnmcy6y8g2s192cwbh5f3m"; depends=[Rcpp]; }; @@ -4476,13 +4553,14 @@ in with self; { RPushbullet = derive2 { name="RPushbullet"; version="0.3.4"; sha256="1mx433hvx660a63s5dzn655zmqv1c1qij0hzddl9z38032brc4ii"; depends=[curl jsonlite]; }; RPyGeo = derive2 { name="RPyGeo"; version="1.0.0"; sha256="1alqgx6blqqwxm76w05g82kc2icx8nvjw7qkdz73gf9ckgza5bb3"; depends=[magrittr purrr raster reticulate rmarkdown sf stringr]; }; RQEntangle = derive2 { name="RQEntangle"; version="0.1.3"; sha256="178haddk8nnscy2vym3k2a3ca9lf6nl7rpjja8lxqdjninvhvwb2"; depends=[iterators itertools]; }; - RQuantLib = derive2 { name="RQuantLib"; version="0.4.21"; sha256="06xj6cl17j821jbs8dk1hadzn18k10lqq6550dj65d837dx63hnj"; depends=[Rcpp zoo]; }; + RQdeltaCT = derive2 { name="RQdeltaCT"; version="1.3.0"; sha256="1zwajwyiwhl12v1119w9xlyw07a9iigj3yy27nm65ninqjbfrn8j"; depends=[coin corrplot ctrlGene dplyr GGally ggplot2 ggpmisc ggsignif Hmisc magrittr oddsratio pheatmap pROC tidyr tidyselect tidyverse]; }; + RQuantLib = derive2 { name="RQuantLib"; version="0.4.22"; sha256="0zs8ldaf1h8hr6czlvj457rr0w4z0rjgj290r3krg4a9ilb1iink"; depends=[Rcpp zoo]; }; RRBoost = derive2 { name="RRBoost"; version="0.1"; sha256="0zp3csrpi0awk88m6sq5sf5v7j32q5sd4mwv61x6bblg991k404k"; depends=[RobStatTM rpart]; }; RRF = derive2 { name="RRF"; version="1.9.4"; sha256="1kdyw0v1m3ajf88gzs70p6l6pic4g46ccwqxi9iznimayby6ygjb"; depends=[]; }; RRI = derive2 { name="RRI"; version="1.1"; sha256="0msdc5j5vx4snl8r3q5nn0mw2i80jds5pjykhmigcrx6jzg6h6i7"; depends=[Rcpp RcppArmadillo]; }; RRMLRfMC = derive2 { name="RRMLRfMC"; version="0.4.0"; sha256="0y8gs9rirrcjb89jqxr7rrp89pjal7lzcscnh4kmabhih3f2d729"; depends=[nnet]; }; - RRNA = derive2 { name="RRNA"; version="1.0"; sha256="14rcqh95ygybci8hb8ays8ikb22g3850s9f3sgx3r4f0ky52dcba"; depends=[]; }; - RRPP = derive2 { name="RRPP"; version="2.0.0"; sha256="02gd17x1504q87xzw384fd5249xd6kpfqib257fqbdhcrd64bw0r"; depends=[ape ggplot2 Matrix]; }; + RRNA = derive2 { name="RRNA"; version="1.1"; sha256="0bgsakpz1wr3wr6c5xa7wx2xmzs3xzkscrgwn6dc7f93kpq1j17p"; depends=[]; }; + RRPP = derive2 { name="RRPP"; version="2.0.2"; sha256="10hd5mp4a39gh6d13lw8xnn4qvziacywls33dngvjxaq9ccxc05p"; depends=[ape ggplot2 Matrix]; }; RRRR = derive2 { name="RRRR"; version="1.1.1"; sha256="14xj0x68nisnxwg27srga8va7dpm1k1mh8xd4bljdb7jykczpn0h"; depends=[expm ggplot2 magrittr matrixcalc mvtnorm]; }; RRTCS = derive2 { name="RRTCS"; version="0.0.4"; sha256="16v6f5yvfq9l1b4h5mr4y0i2k404vdv354yz4k780w79qib7g39p"; depends=[sampling samplingVarEst]; }; RRate = derive2 { name="RRate"; version="1.0"; sha256="1q3f2gphdf50aijnk5xqfpxcqfd4jq7byb1gpb0vcnaxgi3a9lwm"; depends=[]; }; @@ -4504,7 +4582,7 @@ in with self; { RSNNS = derive2 { name="RSNNS"; version="0.4-17"; sha256="1z2slc2gxr3w7m1ybyd69axx1gi4fadjlkg066gf12b86bbmfia2"; depends=[Rcpp]; }; RSP = derive2 { name="RSP"; version="0.4"; sha256="126lag0i2k4fwlr7gnc9jfn63pyi6d6gzzmypyr6jk666pwsk5f6"; depends=[catR DT foreign ggplot2 GPArotation gt hornpa igraph lavaan ltm Metrics mirt MVN plyr polycor psych rJava rstudioapi scales semPlot shiny shinyBS shinycustomloader ShinyItemAnalysis shinyjs shinythemes shinyWidgets xlsx]; }; RSQL = derive2 { name="RSQL"; version="0.2.2"; sha256="1k0s32lcfr2ari7jrkspmzf9ygpz4h737yigz3lkwj5k2r9ls2ax"; depends=[DBI lgr R6]; }; - RSQLite = derive2 { name="RSQLite"; version="2.3.5"; sha256="1wvfadwcr8iv0z6pddfpvl60dq4p8l68v16p9daa002srgzpwlw1"; depends=[bit64 blob cpp11 DBI memoise pkgconfig plogr rlang]; }; + RSQLite = derive2 { name="RSQLite"; version="2.3.7"; sha256="1kllna6hfnyy3rizr8wkpfn7p5sxv3sra12x9vz68hp6i4jmgq15"; depends=[bit64 blob cpp11 DBI memoise pkgconfig plogr rlang]; }; RSSL = derive2 { name="RSSL"; version="0.9.7"; sha256="1am8xv0v5b2z87y8i7m1s41aq55fx30pdnhna5dj87fql5faydqx"; depends=[cluster dplyr ggplot2 kernlab MASS Matrix quadprog Rcpp RcppArmadillo reshape2 scales tidyr]; }; RSSOP = derive2 { name="RSSOP"; version="1.1"; sha256="119xrxpaf68qdb2kj2pbaja6im2nbxsgibb1bnlpnc3fcxkmqcsf"; depends=[]; }; RSSampling = derive2 { name="RSSampling"; version="1.0"; sha256="0p10l7qmksx4ysz1jb84f9nbqzig8wxhwy33yk8hq29nb5i4c9ik"; depends=[LearnBayes]; }; @@ -4524,8 +4602,7 @@ in with self; { RSpincalc = derive2 { name="RSpincalc"; version="1.0.2"; sha256="09fjwfz1bzpbca1bpzxj18ki8wh9mrr5h6k75sc97cyhlixqd37s"; depends=[]; }; RSqlParser = derive2 { name="RSqlParser"; version="1.5"; sha256="0q5wa7bq7m94xx8hcf9p29v5vvkrqzygs3v6yy5xl6jgvshvscvi"; depends=[stringi stringr]; }; RStata = derive2 { name="RStata"; version="1.1.1"; sha256="1wx6cz4567xkfplybmbwmw25snhlaxn48yi620cv6p5xqv458yp7"; depends=[foreign]; }; - RStoolbox = derive2 { name="RStoolbox"; version="0.4.0"; sha256="1b1h2nkm3dbhym8bf7sa3gcbgflfx4mw5ramhrxczlzqsc9g37zi"; depends=[caret dplyr exactextractr ggplot2 lifecycle magrittr Rcpp RcppArmadillo reshape2 sf terra tidyr XML]; }; - RStorm = derive2 { name="RStorm"; version="1.0"; sha256="1n2kiy9b8w6rnv2zmzbl22grwibf619hadf2cjq1ch7rmbr7qb65"; depends=[plyr]; }; + RStoolbox = derive2 { name="RStoolbox"; version="1.0.0"; sha256="1haf2pi1jzlzh077gfanby5g4lp1djz01qcdinxiq0dgs98anrl8"; depends=[caret dplyr exactextractr ggplot2 lifecycle magrittr Rcpp RcppArmadillo reshape2 sf terra tidyr XML]; }; RSurveillance = derive2 { name="RSurveillance"; version="0.2.1"; sha256="02jbm9xl2jg9cgq53i1cvj1rivhprgd07k1rxsayzrskvbmvyjpd"; depends=[epiR epitools mc2d]; }; RTCC = derive2 { name="RTCC"; version="0.1.1"; sha256="0bnm0qwikbbpq3i5q5fwmsgi8fn7w0xk993ngpiqbrf5my3h93kc"; depends=[matrixStats Rcpp testthat vegan]; }; RTD = derive2 { name="RTD"; version="0.4.1"; sha256="0zsv62hx1y9q5a6rd8ri91ff64671b84jr3f88h0q4yni2mribhr"; depends=[dplyr httr jsonlite purrr RcppMsgPack readr urltools uuid]; }; @@ -4534,7 +4611,7 @@ in with self; { RTIGER = derive2 { name="RTIGER"; version="2.1.0"; sha256="08gs26wv6jnd4rzdhb87as26aslgqs128x1ip8h9nmr3l9mwg5fq"; depends=[e1071 extraDistr GenomeInfoDb GenomicRanges ggplot2 IRanges JuliaCall qpdf reshape2 TailRank]; }; RTL = derive2 { name="RTL"; version="1.3.5"; sha256="0ajdrwg8g68imwj21l9mh8q9n1xc00d8lxw60p6vnb39m730d8vg"; depends=[dplyr ggplot2 glue httr jsonlite lifecycle lubridate magrittr PerformanceAnalytics plotly purrr Rcpp readr rlang stringr tibble tidyr tidyselect timetk tsibble TTR xts zoo]; }; RTLknitr = derive2 { name="RTLknitr"; version="1.0.0"; sha256="125sx7gy8gnyhz15cjrmqwrh32w3nd49d8qwg0grj3q12v03i8ca"; depends=[bookdown gt knitr magrittr]; }; - RTMB = derive2 { name="RTMB"; version="1.4"; sha256="0lbnwjh1bd9ryadsmax2gjbzh4fjjr4mm76g1xydq27b0y0411iz"; depends=[MASS Matrix Rcpp RcppEigen TMB]; }; + RTMB = derive2 { name="RTMB"; version="1.5"; sha256="1sgkvr0kyr46lvmp1vyv5fcqaf1qsnm24zbwlh42qrhgh8hxa871"; depends=[MASS Matrix Rcpp RcppEigen TMB]; }; RTSA = derive2 { name="RTSA"; version="0.2.2"; sha256="1fkr374y7pjv99g2b0cdcr5qhfjnjwl52p39w4fvw7iv4ahvvxs1"; depends=[ggplot2 metafor Rcpp scales]; }; RTTWebClient = derive2 { name="RTTWebClient"; version="0.1.3"; sha256="1d4dmw7z90nih9bzajlyqgqvpfmpkxwyhw0w56q396kvw8k644cp"; depends=[base64enc data_table digest httr jsonlite withr]; }; RTaxometrics = derive2 { name="RTaxometrics"; version="3.2.1"; sha256="0f87r45lnygxxlwjq04q08ams7llnjlrfyavx81fbl2g26yp988l"; depends=[]; }; @@ -4566,31 +4643,33 @@ in with self; { RaJIVE = derive2 { name="RaJIVE"; version="1.0"; sha256="1r3csf3xpk6rx494bqamb9b8dhj1169cng6gdi52h62m8vchnak5"; depends=[doParallel foreach ggplot2]; }; RaMS = derive2 { name="RaMS"; version="1.4.0"; sha256="0bhp4sibym8gbzcqzhplfkln31z7b06v4ycd46rg4167yivm2xxc"; depends=[base64enc data_table xml2]; }; RaSEn = derive2 { name="RaSEn"; version="3.0.0"; sha256="1a7jvyvvhzn4aifnhjldn5jr6sxh16b67x335p8wh8g24yvvglvw"; depends=[caret class doParallel e1071 FNN foreach formatR ggplot2 glmnet gridExtra KernelKnn MASS ModelMetrics nnet randomForest ranger rpart]; }; - RaceID = derive2 { name="RaceID"; version="0.3.4"; sha256="10hbgnd7kvs6a3w6jxs78w7b6si3nghbrzfyv3ipflpv37zs8fay"; depends=[cluster coop FateID FNN fpc ggplot2 harmony ica igraph irlba leiden locfit MASS Matrix matrixStats pheatmap princurve quadprog randomForest RColorBrewer Rcpp Rtsne runner umap vegan]; }; + RaceID = derive2 { name="RaceID"; version="0.3.5"; sha256="0jmgc2nf65ymhk88mzlmh96wwygr0gs3ca1mc0all0a5c6vxyj8b"; depends=[cluster coop FateID FNN fpc ggplot2 harmony ica igraph irlba leiden locfit MASS Matrix matrixStats pheatmap princurve quadprog randomForest RColorBrewer Rcpp Rtsne runner umap vegan]; }; Racmacs = derive2 { name="Racmacs"; version="1.2.9"; sha256="0csrbmri44ykrrx25a21hnqca74w6hvsiza43k7jix26bchysynl"; depends=[brotli dplyr ellipsis ggplot2 htmltools htmlwidgets igraph jsonlite ks magrittr MASS rapidjsonr Rcpp RcppArmadillo RcppEnsmallen RcppProgress rlang rmarchingcubes shape shiny shinyFiles shinyjs vctrs]; }; - RadData = derive2 { name="RadData"; version="1.0.1"; sha256="053i6r0j58dws1qisl2701n0fwzrfn5brdx3dcab8xmpzg6s0036"; depends=[]; }; + RadData = derive2 { name="RadData"; version="1.0.2"; sha256="0kpmxii2080iid99y1rh0bdrvw2wf6gqwbafa4p28hvbw9lk6zw3"; depends=[]; }; RadOnc = derive2 { name="RadOnc"; version="1.1.8"; sha256="0nc8f2f2yvfvx81xm87zr08asisyar9zdx3fwqz0lvz5xgrwkp3x"; depends=[oro_dicom ptinpoly]; }; RadialVisGadgets = derive2 { name="RadialVisGadgets"; version="0.2.0"; sha256="18a2c89jpdaln9cl5y4w161121fld08wm57m40qacsj1vlnkh6j9"; depends=[caret dplyr ggplot2 miniUI r_import rlang shiny shinyjs shinyscreenshot tidyr]; }; RadioSonde = derive2 { name="RadioSonde"; version="4.2"; sha256="02ncpyvjxvk192bdaqqmqpr9bfwwli0qp58fxghaf3x0qimd3d1c"; depends=[fields]; }; Radviz = derive2 { name="Radviz"; version="0.9.3"; sha256="0ayrkax1g7x9jvkl8lni08ydm1lhcwpcbvy1xj9zk3bpd5zpll86"; depends=[dplyr ggplot2 hexbin igraph pracma Rcpp RcppArmadillo rlang]; }; RagGrid = derive2 { name="RagGrid"; version="0.2.0"; sha256="0crnpd75lyhd0awzqzqy7bzw4ydgxpyhy1ybb1ff4qsnisbjdbba"; depends=[crosstalk htmltools htmlwidgets knitr]; }; Rage = derive2 { name="Rage"; version="1.6.0"; sha256="0scpig0glh1ajc5fp7xrdb0b5f11x1f5ls43wb6b9kjif4fi25cl"; depends=[DiagrammeR expm MASS popdemo]; }; - RainfallErosivityFactor = derive2 { name="RainfallErosivityFactor"; version="0.1.0"; sha256="16yrr2bl62m1nr81nzvmdq7s78f7fg50dah5dg5q4j4j7z8qfsqz"; depends=[]; }; + RainfallErosivityFactor = derive2 { name="RainfallErosivityFactor"; version="1.0.0"; sha256="0yw6a2x7yp49wwx2r38fwbcv74xsb9j7k64q68v2qdk45khmixd9"; depends=[]; }; RamanMP = derive2 { name="RamanMP"; version="1.0"; sha256="0rdj8vvs9l86yscx2mvy6nazzws8gd1x5bxvszlssinb20pns69z"; depends=[dplyr ggplot2 ggrepel imputeTS]; }; Ramble = derive2 { name="Ramble"; version="0.1.1"; sha256="0225za85i5nvf8l89i5bz7nxsxykd3v9fp1wgihmncca6n8vhgpl"; depends=[]; }; RandMeta = derive2 { name="RandMeta"; version="0.1.0"; sha256="0bh3rkdfmwqym47q8f90pw3mmx7q8jyp4rz16ggqrmk1b5bdyqjb"; depends=[]; }; RandPro = derive2 { name="RandPro"; version="0.2.2"; sha256="092mm9gybvcby2n161nldlq8s2ja2bc43jnkln6ss3lr29rmi9b3"; depends=[caret e1071]; }; RandVar = derive2 { name="RandVar"; version="1.2.3"; sha256="00zpbbf7b3g38lh1krvwhfyxlz3f9cklfg9z2adi65lwqc27w54b"; depends=[distr distrEx startupmsg]; }; RandomForestsGLS = derive2 { name="RandomForestsGLS"; version="0.1.4"; sha256="1viq8vv4f0l0ywcr9s1n1vk23a917yj35lgvrpac9rf0vvk70an7"; depends=[BRISC matrixStats pbapply randomForest]; }; + RandomProjectionTest = derive2 { name="RandomProjectionTest"; version="0.1.4"; sha256="1pg88q7k89s33yfnqkn5d03mc3ix8ihh4q3l6064p44d98wdsw4f"; depends=[glue MASS]; }; Randomuseragent = derive2 { name="Randomuseragent"; version="0.0.1"; sha256="1ym272z5a2wnprz59db8knszzqglmrdmk77r7cfyzy5jwcqzy4jn"; depends=[]; }; RanglaPunjab = derive2 { name="RanglaPunjab"; version="2.3.4"; sha256="01j3gww9kil02d44jwlkz6j7lwn2him830bnshkly0s7mgh22pgr"; depends=[jpeg shiny tidyverse]; }; RankAggSIgFUR = derive2 { name="RankAggSIgFUR"; version="1.0.0"; sha256="0wsmd9p3dfjs650q3b81k91fbl3bpjc8grm4233m8f941cabap8p"; depends=[combinat data_table plyr Rfast]; }; RankAggreg = derive2 { name="RankAggreg"; version="0.6.6"; sha256="1g70njfv776qgp3i52kr6yxg7x9qliqaj33jm5vkgbajw1ampsdx"; depends=[gtools]; }; RankAggregator = derive2 { name="RankAggregator"; version="0.0.1"; sha256="0j4s4fv28fbc6ij6fzpmza9n5lfrql8ll33fi65vhczz9pjhpjii"; depends=[]; }; + RankPCA = derive2 { name="RankPCA"; version="0.1.0"; sha256="1gp1j9lbjvlgf9n2ccb77604l88r0jdp33ryjc7djpy3i3ccr16s"; depends=[caret]; }; RankResponse = derive2 { name="RankResponse"; version="4.0.0"; sha256="1i686wgqz8pxdjsgyqr9i8fq1779h3jpzzrmh407pknawyii1vmy"; depends=[]; }; Rankcluster = derive2 { name="Rankcluster"; version="0.98.0"; sha256="0lipl57xx6ik66579vmhammy86iwjlnc7qmkjn9xcj3prkqy5p2i"; depends=[Rcpp RcppEigen]; }; RankingProject = derive2 { name="RankingProject"; version="0.4.0"; sha256="11i47arl3r32iky29wjawb26g0hiji0ddl70gcrcy8v9j0h01vap"; depends=[]; }; - Rapi = derive2 { name="Rapi"; version="1.0.4"; sha256="04hfp2v43dh6lix9kaczl02204qigv4xkkxfldz02c5k33r120ac"; depends=[crayon digest dplyr glue httr httr2 jsonlite lubridate magrittr purrr Rcpp rlang rlist stringr tibble]; }; + Rapi = derive2 { name="Rapi"; version="1.0.5"; sha256="044c3qs6vyijl8j21rs351jvmz2f6i864bzzy8vrh4p58j7zhq0d"; depends=[crayon digest dplyr glue httr httr2 jsonlite lubridate magrittr purrr Rcpp rlang rlist stringr tibble]; }; RapidPolygonLookup = derive2 { name="RapidPolygonLookup"; version="0.1.1"; sha256="0h4snn3haa4a5rkafg98419by4nnz219wsm3y0dqgm4hw4bvha0g"; depends=[PBSmapping RANN RgoogleMaps sp]; }; RapidoPGS = derive2 { name="RapidoPGS"; version="2.3.0"; sha256="0jks5v9822gk4gip7027m2l26gccrm81iazn1006n1a0871caf98"; depends=[bigreadr bigsnpr coloc curl data_table dplyr GenomicRanges IRanges magrittr RCurl]; }; Rapp = derive2 { name="Rapp"; version="0.1.0"; sha256="06rixyz2r4w82dbpr0d3z74hv0kxgd677d9c690jjnm9hrskwfbn"; depends=[yaml]; }; @@ -4603,13 +4682,14 @@ in with self; { RationalExp = derive2 { name="RationalExp"; version="0.2.2"; sha256="0a51sfps3sfb71m93jdsmbvj6kafbyfrq790ix238j570f5xafpg"; depends=[snowfall]; }; RationalMatrix = derive2 { name="RationalMatrix"; version="1.0.0"; sha256="1nzhfmvckb9hp53lyw6gyv5r492n4xii8l1xkr38p5i07r52zq2c"; depends=[BH gmp Rcpp RcppEigen]; }; Ravages = derive2 { name="Ravages"; version="1.1.3"; sha256="0scfxzfisqcj9zn50pvhy9xrl3k5bgglp11gqxf885yskdiwrkik"; depends=[bedr BH curl data_table dfidx Formula gaston mlogit Rcpp RcppEigen RcppParallel]; }; - RavenR = derive2 { name="RavenR"; version="2.2.0"; sha256="17m6q6v3s3maj3wlic9id4bll4n3waa34sj8580l1kd5knhybmil"; depends=[colorspace cowplot crayon DiagrammeR dplyr dygraphs gdata ggplot2 igraph lubridate magrittr purrr Rcpp RCurl scales stringr tidyr visNetwork xts zoo]; }; + RavenR = derive2 { name="RavenR"; version="2.2.2"; sha256="0z1gp1jvh0b80f5bkfg1gg7x116axfgix13hpviyh0c3mfi5yw37"; depends=[colorspace cowplot crayon DiagrammeR dplyr dygraphs gdata ggplot2 igraph lubridate magrittr purrr Rcpp RCurl scales stringr tidyr visNetwork xts zoo]; }; RawHummus = derive2 { name="RawHummus"; version="0.3.3"; sha256="0m88cywxwwiyvr2i7ipi9yf5znzdjfsmgz2x0ry4d6mm5469rws4"; depends=[config data_table dplyr ggplot2 golem kableExtra markdown plotly purrr RaMS RColorBrewer rmarkdown shiny shinycustomloader shinydashboard shinydashboardPlus shinyMatrix]; }; Rbeast = derive2 { name="Rbeast"; version="1.0.0"; sha256="1k36rinhm8r6czk60f51p2d895g280k6qrr6qkcqc33l60jl6khi"; depends=[]; }; Rbent = derive2 { name="Rbent"; version="0.1.0"; sha256="0xkb57dhhfd3342rv0xwbhbhn4zp5fbfch84fbh0sickm09l9vrj"; depends=[Rfit]; }; RblDataLicense = derive2 { name="RblDataLicense"; version="0.2.5"; sha256="05xwk8j8qgy89vg1dkjwslbbbb3nrqagbiwag8giyzifx7w0gfsp"; depends=[RCurl xts]; }; Rblpapi = derive2 { name="Rblpapi"; version="0.3.14"; sha256="1xrfz5f7vibsfdn0v3mg7rvbn31j9znqk902cb1fwbqfqnkxw9yx"; depends=[BH Rcpp]; }; Rborist = derive2 { name="Rborist"; version="0.3-7"; sha256="15i5aj7p3lwp7r84kv7i9jfhwbs8r1yn44shpm9gf17kwvwzw7h1"; depends=[data_table digest Rcpp]; }; + RbyExample = derive2 { name="RbyExample"; version="0.0.100"; sha256="1fawkazrwsl4wl3lz8izbykz2qqh753s2zx6n22nchhsg5v3ndqs"; depends=[]; }; Rcan = derive2 { name="Rcan"; version="1.3.82"; sha256="0asmlhh786c9gfgxkqybv8xzz8bqzirxvq8nr4gglx1pc812idkb"; depends=[data_table ggplot2 scales]; }; Rcapture = derive2 { name="Rcapture"; version="1.4-4"; sha256="0yihjgpmq9agws1b0s3n9s1pdvw1wjfpcyvr8536v4ypfgkmjbcr"; depends=[]; }; Rcatch22 = derive2 { name="Rcatch22"; version="0.2.1"; sha256="1ggraxn88fl8m63d7aaffifgj34g6nrzjjd696lkj8ysi6x77qdl"; depends=[Rcpp rlang]; }; @@ -4621,16 +4701,16 @@ in with self; { RclusTool = derive2 { name="RclusTool"; version="0.91.6"; sha256="03qz4k6h0z1sj2gyyq5sk7hilmynvqvvj35mrml629rxhgjyyhgs"; depends=[class cluster conclust corrplot e1071 factoextra FactoMineR ggplot2 jpeg knitr MASS mclust mda mmand nnet png randomForest reshape rlang SearchTrees sp stringi stringr tcltk2 tkrplot]; }; Rcmdr = derive2 { name="Rcmdr"; version="2.9-2"; sha256="175c5iqgp2j7x5vjijnklc35nbnyz0s83rzmf7qq8kxv8fv2jmw8"; depends=[abind car effects lme4 RcmdrMisc relimp tcltk2]; }; RcmdrMisc = derive2 { name="RcmdrMisc"; version="2.9-1"; sha256="0khp8dw1b3v5jqbhnqxjcyyjz9hj9pb98niacn17cf9iln9rr7mc"; depends=[abind car colorspace e1071 foreign haven Hmisc lattice MASS nortest readstata13 readxl sandwich]; }; - RcmdrPlugin_BWS1 = derive2 { name="RcmdrPlugin.BWS1"; version="0.2-1"; sha256="09g82sg4a6xq9bs486rp1krmdidfn7iq1zf0j5z4sy2zxbmncn6f"; depends=[crossdes Rcmdr support_BWS support_CEs survival]; }; - RcmdrPlugin_BWS2 = derive2 { name="RcmdrPlugin.BWS2"; version="0.2-1"; sha256="1z9iigy9z65azv163rdps0sk20v964rlgxw294r85v3x0yhgqkjr"; depends=[DoE_base Rcmdr support_BWS2 support_CEs survival]; }; - RcmdrPlugin_BWS3 = derive2 { name="RcmdrPlugin.BWS3"; version="0.2-2"; sha256="1bwxy858wlwbsx7pdss7kcm7jjaxp95gzbz83h5lhyykv170p5a2"; depends=[Rcmdr support_BWS3 support_CEs survival]; }; + RcmdrPlugin_BWS1 = derive2 { name="RcmdrPlugin.BWS1"; version="0.2-2"; sha256="0as8nnyfk2fjsc92rxywi36bp41zppwcx9207zywqxb0b3awdn08"; depends=[crossdes Rcmdr support_BWS support_CEs survival]; }; + RcmdrPlugin_BWS2 = derive2 { name="RcmdrPlugin.BWS2"; version="0.2-2"; sha256="1xsacwicglpcqd6kipqgg68vbhh81d6hi1n6wgliw49iic2jnshg"; depends=[DoE_base Rcmdr support_BWS2 support_CEs survival]; }; + RcmdrPlugin_BWS3 = derive2 { name="RcmdrPlugin.BWS3"; version="0.2-3"; sha256="09vmq77lk0j9qg4jb05rdys7frf8zpy063k1gq1ja2dw1789rld3"; depends=[Rcmdr support_BWS3 support_CEs survival]; }; RcmdrPlugin_BiclustGUI = derive2 { name="RcmdrPlugin.BiclustGUI"; version="1.1.3.1"; sha256="1wb1pbwghq1xxpwlihfixx42yf1f1py3hdwh8sfpqklh63ymwifk"; depends=[BcDiag BiBitR BicARE biclust fabia gplots iBBiG Rcmdr s4vd superbiclust viridis]; }; - RcmdrPlugin_DCCV = derive2 { name="RcmdrPlugin.DCCV"; version="0.1-4"; sha256="1xlzl5qs266h4qhazib0hh1qdi5i31q9bxph8sajjvv4na4py1pv"; depends=[DCchoice Rcmdr]; }; - RcmdrPlugin_DCE = derive2 { name="RcmdrPlugin.DCE"; version="0.2-2"; sha256="0jy6aiz524g08nr6kyw53xi1j816b22vycq9fhk93181w2gmfm98"; depends=[Rcmdr support_CEs survival]; }; + RcmdrPlugin_DCCV = derive2 { name="RcmdrPlugin.DCCV"; version="0.1-5"; sha256="12qdjjad7l0rdl2rh7jir5ygw9rz008wpbr0shkarc84sz1aipxr"; depends=[DCchoice Rcmdr]; }; + RcmdrPlugin_DCE = derive2 { name="RcmdrPlugin.DCE"; version="0.2-3"; sha256="181iww86gvbr6n5wnjqyfqzzpxiv9wyvwx560bw4g55rfnzck67w"; depends=[Rcmdr support_CEs survival]; }; RcmdrPlugin_DoE = derive2 { name="RcmdrPlugin.DoE"; version="0.12-5"; sha256="0nsaj3wis8fn73spyv90j0magcl3lq4pznfxzdr62rg8w7likqx7"; depends=[DoE_base DoE_wrapper FrF2 Rcmdr RcmdrMisc]; }; RcmdrPlugin_EACSPIR = derive2 { name="RcmdrPlugin.EACSPIR"; version="0.2-3"; sha256="0v7pw0m8cxpnkdm47b8jb3z94p1igi98s4r8i0gm7x7ad4fzccww"; depends=[abind ez nortest R2HTML Rcmdr RcmdrMisc reshape]; }; RcmdrPlugin_EBM = derive2 { name="RcmdrPlugin.EBM"; version="1.0-10"; sha256="02zips1jbfn7cshjlrm1gr632px2zxlys8i0f1nrf1gifl44v1qw"; depends=[abind epiR Rcmdr]; }; - RcmdrPlugin_EZR = derive2 { name="RcmdrPlugin.EZR"; version="1.64"; sha256="0h0pz5y79q3inq45shd785v6cz2i46x0c88v65szrqrv9rnrm1d2"; depends=[Rcmdr readstata13]; }; + RcmdrPlugin_EZR = derive2 { name="RcmdrPlugin.EZR"; version="1.67"; sha256="035a1ch36ygwknk2hwjxs6ir1izwbqn0iq3y0qxv8iw4qa668ar8"; depends=[Rcmdr readstata13]; }; RcmdrPlugin_EcoVirtual = derive2 { name="RcmdrPlugin.EcoVirtual"; version="1.0"; sha256="0q879wnrmgbaddv883q9zdnp0i7kjcgn8cffv7lp8nrsqil6l7mc"; depends=[EcoVirtual Rcmdr]; }; RcmdrPlugin_Export = derive2 { name="RcmdrPlugin.Export"; version="0.3-1"; sha256="17fn3si6b6h20c52k1k6fv9mslw3f9v0x1kxixzcvq54scdx0sk0"; depends=[Hmisc Rcmdr xtable]; }; RcmdrPlugin_FactoMineR = derive2 { name="RcmdrPlugin.FactoMineR"; version="1.8"; sha256="1fr50yfjh1iy65lkvkw992l02q0vgrw2advj707z02806p69bkn1"; depends=[FactoMineR Rcmdr]; }; @@ -4644,13 +4724,11 @@ in with self; { RcmdrPlugin_RMTCJags = derive2 { name="RcmdrPlugin.RMTCJags"; version="1.0-2"; sha256="04g5a1dpch54k5ckfkrg4vsap1nc3af1i0i559qigv3hy8n7pm80"; depends=[coda igraph Rcmdr rjags rmeta runjags]; }; RcmdrPlugin_ROC = derive2 { name="RcmdrPlugin.ROC"; version="1.0-19"; sha256="1m5k8y2xy78bpyvi2cdnvmicr5dkjxb8v65blcmgrhf7i0zhhj5p"; depends=[pROC Rcmdr ResourceSelection]; }; RcmdrPlugin_RiskDemo = derive2 { name="RcmdrPlugin.RiskDemo"; version="3.2"; sha256="07v15wnmqqa69gy2kl2jkdgn9nzjj2fz5yy56gkhxczw7j6516ij"; depends=[data_table demography dplyr forecast ftsa ggplot2 Rcmdr scales zoo]; }; - RcmdrPlugin_SCDA = derive2 { name="RcmdrPlugin.SCDA"; version="1.2.0"; sha256="1yg2b5vcnf956w04phxg15a4my9hvkbc27nzyn30b2wn47ysxghj"; depends=[Rcmdr SCMA SCRT SCVA]; }; RcmdrPlugin_TeachStat = derive2 { name="RcmdrPlugin.TeachStat"; version="1.1.3"; sha256="1l73zpy94av30x31rskzggaf6bmj7wfx1k6mksmpjmy47hk07qlg"; depends=[distr distrEx Hmisc IndexNumR lme4 Rcmdr tcltk2 tseries]; }; RcmdrPlugin_TeachingDemos = derive2 { name="RcmdrPlugin.TeachingDemos"; version="1.2-0"; sha256="14zsqjni2w2smq99cv1pjdw90zw83g4nn7h7cn07fms9j0g12yd6"; depends=[Rcmdr TeachingDemos]; }; RcmdrPlugin_UCA = derive2 { name="RcmdrPlugin.UCA"; version="5.1-1"; sha256="15z2pyi92vznkbfqycc33b39dl2wx0kf2l5w1wv8pr85i5449dzq"; depends=[IQCC qcc qicharts2 randtests Rcmdr rmarkdown TeachingDemos tseries]; }; RcmdrPlugin_WorldFlora = derive2 { name="RcmdrPlugin.WorldFlora"; version="1.3"; sha256="1rcmn5drv3q09v9hz383010g8377lfiazhjq1vd0f90gf0nl5jfy"; depends=[Rcmdr WorldFlora]; }; RcmdrPlugin_aRnova = derive2 { name="RcmdrPlugin.aRnova"; version="0.0.5"; sha256="0ys3565pcbr554yb1gi2h149vhvwc0gdfmh7mz8zzd4367hqn553"; depends=[Rcmdr]; }; - RcmdrPlugin_coin = derive2 { name="RcmdrPlugin.coin"; version="1.0-23"; sha256="1xl077cvabsbzhq3hn4yyc500645lbmyvdnvx2m9rcpwvyghlzvf"; depends=[coin multcomp Rcmdr survival]; }; RcmdrPlugin_cpd = derive2 { name="RcmdrPlugin.cpd"; version="0.2.0"; sha256="1s0y40nh91fi6i91zvn7q106d4nnshflfnzs8m63skklsdxk3by0"; depends=[cpd Rcmdr RcmdrMisc]; }; RcmdrPlugin_depthTools = derive2 { name="RcmdrPlugin.depthTools"; version="1.4"; sha256="16y60yymx97nh587939lahsh0mk53yy25zy6i90l9vad0r7ih23v"; depends=[depthTools Rcmdr]; }; RcmdrPlugin_orloca = derive2 { name="RcmdrPlugin.orloca"; version="4.8.2"; sha256="0nkszrbcprd08p0i9r6k2syg44kyqpdakmwmjf480pwydq3sz69n"; depends=[orloca orloca_es Rcmdr]; }; @@ -4664,12 +4742,13 @@ in with self; { RcppAPT = derive2 { name="RcppAPT"; version="0.0.9"; sha256="03q2i1b9lrb0sn0vq4jyqjiy2zwi2ydhzlnw1b8nj9xdfxx804mx"; depends=[Rcpp]; }; RcppAlgos = derive2 { name="RcppAlgos"; version="2.8.3"; sha256="0ppix426yg8rnh07z2clv634ynvvwmjlsjnsxh3srss6xa8yfrb0"; depends=[cpp11 gmp]; }; RcppAnnoy = derive2 { name="RcppAnnoy"; version="0.0.22"; sha256="0rcgvmlp3by57k562pbxsncirww1vv8zarfxrjzfgly4hzbj28cz"; depends=[Rcpp]; }; - RcppArmadillo = derive2 { name="RcppArmadillo"; version="0.12.8.1.0"; sha256="0ax4812dm33c67ckd902qabis3dgqmpkchk4s30bshnfv4fxx1z2"; depends=[Rcpp]; }; + RcppArmadillo = derive2 { name="RcppArmadillo"; version="0.12.8.4.0"; sha256="0iihy2pbmc56s5s6x7ac1c1biqda60gyqkddvn2c211j0xjnigya"; depends=[Rcpp]; }; RcppArray = derive2 { name="RcppArray"; version="0.3.0"; sha256="0n32nqqa2cdx0lams95yhdij837asbs6kmaahnf2hm6q0pnwbj43"; depends=[Rcpp]; }; RcppBDT = derive2 { name="RcppBDT"; version="0.2.6"; sha256="11l70rlayg2xzmg34sg3896adzpfpvplciyicjpk963bddjb2ys8"; depends=[BH Rcpp]; }; RcppBigIntAlgos = derive2 { name="RcppBigIntAlgos"; version="1.1.0"; sha256="0b83c5s6zpvf545yvpa3fa0nhgvrryg7n11l9200azi897zmlwv3"; depends=[cpp11 gmp]; }; + RcppBlaze = derive2 { name="RcppBlaze"; version="1.0.1"; sha256="09v2j44dwxrwi4x5d0hcjw4bdfzjlvnxsxx3jyq4l7i3vja2459d"; depends=[Matrix Rcpp]; }; RcppCCTZ = derive2 { name="RcppCCTZ"; version="0.2.12"; sha256="1jr4hi3zbm935q6ykkvnywlma36d3jl7fxmqhxs62jxbnyyqf81a"; depends=[Rcpp]; }; - RcppCGAL = derive2 { name="RcppCGAL"; version="5.6.2"; sha256="0mqwlalgddgybf2j1f54lj1d1lxgjcsh6275512cg0xjvss8mkln"; depends=[Rcpp]; }; + RcppCGAL = derive2 { name="RcppCGAL"; version="5.6.3"; sha256="0jb410wcf9djlii2ry27xbykkanld6vngl141b6i68v40y1c2n73"; depends=[Rcpp]; }; RcppCNPy = derive2 { name="RcppCNPy"; version="0.2.12"; sha256="16n3c2pfz9i95ngalxc5wvigwd1jfi2qwqm1v605qhidgf2vqvc5"; depends=[Rcpp]; }; RcppCWB = derive2 { name="RcppCWB"; version="0.6.4"; sha256="17w4jz6rngwm3kqwz0v547s43xvjlxc86y9yy4hnc7blkqcp4w2g"; depends=[fs Rcpp]; }; RcppCensSpatial = derive2 { name="RcppCensSpatial"; version="0.3.0"; sha256="0ghywbg2zrhd72y3hf99niqlw04gvfzfa02pa581lvvd67z19gjp"; depends=[ggplot2 gridExtra MomTrunc mvtnorm Rcpp RcppArmadillo RcppProgress Rdpack relliptical roptim StempCens]; }; @@ -4693,8 +4772,9 @@ in with self; { RcppHMM = derive2 { name="RcppHMM"; version="1.2.2"; sha256="0scdzmns1yw2gbarblzd6cbvndlysz54ff17qijiz17ql5cyzly6"; depends=[Rcpp RcppArmadillo]; }; RcppHNSW = derive2 { name="RcppHNSW"; version="0.6.0"; sha256="03sqzz1993jsjm5vpyd1n1fpsrdfrky6dpv7m9ialhs1m00fv9m5"; depends=[Rcpp]; }; RcppHungarian = derive2 { name="RcppHungarian"; version="0.3"; sha256="00wxi77ajnhwds1pnmhbxaykdaiyh6ayblif58sx9r5rvv055c1a"; depends=[Rcpp]; }; - RcppInt64 = derive2 { name="RcppInt64"; version="0.0.4"; sha256="1gfd4jsg5dvl2pzyqwi2vk16i06hgcskz2a9v7fw79ch80mcnf1c"; depends=[Rcpp]; }; + RcppInt64 = derive2 { name="RcppInt64"; version="0.0.5"; sha256="1h4lshkn3p3c7swygbpmkg0pa80xcp3f9alck5q4bmml61hicwjk"; depends=[Rcpp]; }; RcppJagger = derive2 { name="RcppJagger"; version="0.0.2"; sha256="1zzc7vkwylwwgrbak2z32629gbl5jq2gdfc9qq0a8fk7c7rvk988"; depends=[cli purrr Rcpp rlang]; }; + RcppLbfgsBlaze = derive2 { name="RcppLbfgsBlaze"; version="0.1.0"; sha256="1c3cdnhabxns804baa416fjd62ayy4mn5wcyfay1q2w3cijryjq1"; depends=[Rcpp RcppBlaze]; }; RcppML = derive2 { name="RcppML"; version="0.3.7"; sha256="1ih8i7i6m221iw227mnl3rvnaw2l53h8fpnc4f8yn9sm10anap1j"; depends=[Matrix Rcpp RcppEigen]; }; RcppMeCab = derive2 { name="RcppMeCab"; version="0.0.1.2"; sha256="0varavfbrqzma176rw0dr9v5chh7pxh5y9g0rs3v7hqnlghp22y2"; depends=[BH Rcpp RcppParallel]; }; RcppMsgPack = derive2 { name="RcppMsgPack"; version="0.2.3"; sha256="0ffdw5ckkax8j87q0ykjhyp45l7gvxjppdi73kc4r5qxvijll2g3"; depends=[BH Rcpp]; }; @@ -4707,7 +4787,7 @@ in with self; { RcppRoll = derive2 { name="RcppRoll"; version="0.3.0"; sha256="0srzfhzkk42kzrdjnhbb37946jp1p688rgysy6k3i2is8jb21zyb"; depends=[Rcpp]; }; RcppSMC = derive2 { name="RcppSMC"; version="0.2.7"; sha256="0rp5s8j72al39rihn0q0j0ws6l1bxl1hlbx31mjllzhiq03pn2mq"; depends=[FKF Rcpp RcppArmadillo]; }; RcppSimdJson = derive2 { name="RcppSimdJson"; version="0.1.11"; sha256="1q5gqa1pp71f952wvl1fpw9r2qm92112x5irw1splf3y6k6m4r6h"; depends=[Rcpp]; }; - RcppSpdlog = derive2 { name="RcppSpdlog"; version="0.0.16"; sha256="12xryg2mp00nxmpchf0lki43c13c1vsda14pcc4dcfplamwkhlza"; depends=[Rcpp]; }; + RcppSpdlog = derive2 { name="RcppSpdlog"; version="0.0.17"; sha256="0f1s0c32kid910p2q08d77rwprlxx3cq3ngy0kfgfpy13cvm34aa"; depends=[Rcpp]; }; RcppStreams = derive2 { name="RcppStreams"; version="0.1.3"; sha256="06il7q3afaws57m0fxf04f2p5dvs23l1f7gl78pxwzclacdy3839"; depends=[BH Rcpp]; }; RcppTN = derive2 { name="RcppTN"; version="0.2-2"; sha256="0m2wc5n1fzxv56s4gqqnygb24dbadgrpgjm4bs4hr6qazgjapymf"; depends=[Rcpp]; }; RcppTOML = derive2 { name="RcppTOML"; version="0.2.2"; sha256="1ak3dwzdrmq9kd30i12fy582rsn5xfljw214liv1w8l2rbwr24rp"; depends=[Rcpp]; }; @@ -4723,7 +4803,7 @@ in with self; { Rcssplot = derive2 { name="Rcssplot"; version="1.0.0"; sha256="0hnzwjwk9zh4zbzy8sa0z6amikvpd9k1p1abd38khr8q8k1k8jiv"; depends=[]; }; Rcurvep = derive2 { name="Rcurvep"; version="1.3.1"; sha256="1l29z50ka9n2qma1pk8gw00xhxvzxkrd07dwrd8k5b36kiql2q3y"; depends=[boot dplyr furrr ggplot2 magrittr purrr Rdpack rJava rlang stringr tibble tidyr tidyselect]; }; Rd2md = derive2 { name="Rd2md"; version="1.0.0"; sha256="130y2s16404jrl6xprra9wnscbpk3adhd29br6w9y0m8ngw2wxj0"; depends=[]; }; - Rd2roxygen = derive2 { name="Rd2roxygen"; version="1.15"; sha256="08hkwcjzn4kv47cgq2rckrb1fs4y5mic0kb87sk8mc4qbl1353vb"; depends=[formatR roxygen2 xfun]; }; + Rd2roxygen = derive2 { name="Rd2roxygen"; version="1.16"; sha256="1p8xzgzl1h1ykj1j9c3gyr7a9m89sd9kwr5yqbdy9jkiwmmbb919"; depends=[formatR roxygen2 xfun]; }; Rdiagnosislist = derive2 { name="Rdiagnosislist"; version="1.2"; sha256="0jnjqwqvaj6brgpmd9xj04ax5dbwqpbb89hhn1m2bd3v9673k1v3"; depends=[bit64 data_table]; }; Rdice = derive2 { name="Rdice"; version="1.0.0"; sha256="1xibvm690808p2g3jch7rh1825yrpgln2hjfclgxjwn822qvs4xr"; depends=[data_table]; }; Rdimtools = derive2 { name="Rdimtools"; version="1.1.2"; sha256="0bl8ffyy9jb6xp1jb350fj5pw3zvc1dnrdhl4vi25kl84pp30xl6"; depends=[ADMM CVXR maotai MASS mclustcomp RANN Rcpp RcppArmadillo RcppDE RcppDist Rdpack RSpectra]; }; @@ -4741,7 +4821,7 @@ in with self; { ReMFPCA = derive2 { name="ReMFPCA"; version="1.0.0"; sha256="0q7jzya5is4ik8cjirnhixcpgda5s9a450pyksyzc05fmn7rw3rc"; depends=[expm fda Matrix R6]; }; ReacTran = derive2 { name="ReacTran"; version="1.4.3.1"; sha256="05c9jfvj134gy3by7m3r1fbar0m39vaydr7d2py9cakzs44fqfpj"; depends=[deSolve rootSolve shape]; }; ReadDIM = derive2 { name="ReadDIM"; version="0.2.11"; sha256="1dyf1hrqcjqramb957kj7ngd65439p7ywa0r2rdlyn4bg89myi7c"; depends=[raster stringr]; }; - RealVAMS = derive2 { name="RealVAMS"; version="0.4-5"; sha256="17sr3g89p645cn6zb887xvrp9f8rrm7zm9mhgf9ky14fmz644d9r"; depends=[Matrix numDeriv Rcpp RcppArmadillo]; }; + RealVAMS = derive2 { name="RealVAMS"; version="0.4-6"; sha256="1945vxqj4y6fci3pwrq5jr91ikx2yn91jm33fm0x1x1bzv7krcgh"; depends=[Matrix numDeriv Rcpp RcppArmadillo]; }; Rearrangement = derive2 { name="Rearrangement"; version="2.1"; sha256="0q253nj62rl65vjsq6503r80qa2j35wac8lv7ydp9w260p28z923"; depends=[quantreg]; }; RecAssoRules = derive2 { name="RecAssoRules"; version="1.0"; sha256="0jvl9yl1rg69bqb1cimi8r0bry73jhsq73fxfyy33ljwym2cdgv6"; depends=[Rcpp]; }; Recocrop = derive2 { name="Recocrop"; version="0.4-1"; sha256="1drh1qssnb42p1zl45phpggxhx6is435k9f1vzga0q0dddr5q770"; depends=[meteor Rcpp terra]; }; @@ -4769,12 +4849,13 @@ in with self; { RenvModule = derive2 { name="RenvModule"; version="1.1"; sha256="1wmz6k0f9lpa8d7qxqm308l7h11k0cj07q3qisfjic5sp308c3d2"; depends=[]; }; Renvlp = derive2 { name="Renvlp"; version="3.4.5"; sha256="1af1hjv66kxjljrx1ryr4c8w969jjvdd284nxsh1b7rms80iw16r"; depends=[Matrix matrixcalc orthogonalsplinebasis pls Rsolnp]; }; RepaymentPlan = derive2 { name="RepaymentPlan"; version="0.1.0"; sha256="1fd4n24bd5s2kqmls7mmsidblaf8nzm97kz52mfsb6i6fci0pgah"; depends=[]; }; - RepeatedHighDim = derive2 { name="RepeatedHighDim"; version="2.2.0"; sha256="1lx4y2f4qc1vg4iydr1ydv986fi2k4vnd8y3fr54kgkhvy0ni645"; depends=[ddalpha geometry MASS mvtnorm nlme rgl]; }; + RepeatedHighDim = derive2 { name="RepeatedHighDim"; version="2.3.0"; sha256="17zgmw78lz6ymz8371g03kasfnrj5z9dhhfpgjpfq4ba3g0mvxlx"; depends=[ddalpha geometry MASS mvtnorm netmeta nlme progress rgl]; }; RepertoiR = derive2 { name="RepertoiR"; version="0.0.1"; sha256="1m7n7p40n3djy91z8z3gqqwscqgij63rjrj2bqbl3baqz16nf4hc"; depends=[circlize igraph reshape2 stringdist stringi stringr]; }; Replicate = derive2 { name="Replicate"; version="1.2.0"; sha256="0kqy248c8n7qr5hwzvqm7flnjlwd60c577r1d4vzgfxn7azd5v3v"; depends=[ggplot2 metafor]; }; ReplicationSuccess = derive2 { name="ReplicationSuccess"; version="1.3.2"; sha256="0li1sza6afxizfgcczdi8916mb5z63agpx828a48f50ldc25rlvd"; depends=[]; }; Repliscope = derive2 { name="Repliscope"; version="1.1.1"; sha256="04sxcnsd8vz5kbzqz52iqzwayrmkzc51bcwnfkp53wymiw4vppiz"; depends=[colourpicker ggplot2 shiny]; }; RepoGenerator = derive2 { name="RepoGenerator"; version="0.0.1"; sha256="0d6s2sqyycaqrg32xdkp3pr5i7qmvwrfrjcd7f94a9y3lz4bz5b5"; depends=[git2r httr rmarkdown rstudioapi]; }; + ReporterScore = derive2 { name="ReporterScore"; version="0.1.5"; sha256="0dcxaf8yvcvzxwfk3y8knkk03qr9wa5g382k0cllxjwq8ly0nxcw"; depends=[dplyr foreach ggnewscale ggplot2 ggrepel magrittr pcutils reshape2 scales stringr]; }; Require = derive2 { name="Require"; version="0.3.1"; sha256="1d87vzxix2lwqjkl5h5kcpvjyd794li5z8vxf1r5dyd7nzmkm1qq"; depends=[data_table]; }; ResIN = derive2 { name="ResIN"; version="1.1.0"; sha256="0m40s7qsxpphja4cw8d6f7aq5vphqzkqzy61jpa17bnyfq0v9v2d"; depends=[DirectedClustering dplyr fastDummies ggplot2 igraph Matrix qgraph wCorr]; }; ResPBIBD = derive2 { name="ResPBIBD"; version="0.1.0"; sha256="00a3qbam4dc9lwfyqq63j8q9yppd4nr7pk0wbikjfw6rnbjsl1sh"; depends=[]; }; @@ -4783,10 +4864,11 @@ in with self; { ResistorArray = derive2 { name="ResistorArray"; version="1.0-32"; sha256="0zqnl0bbqrj5hn5ywhlqyrlz5ryql88qahlgs9989v4rljcxxlam"; depends=[]; }; ResourceSelection = derive2 { name="ResourceSelection"; version="0.3-6"; sha256="03vilnchjnl34k07cr7qkc993qh6wdgmrgswrnclnc2pm95fm0qf"; depends=[MASS Matrix pbapply]; }; RespirAnalyzer = derive2 { name="RespirAnalyzer"; version="1.0.2"; sha256="00qyylmnjlw7hd56bgf48p2za4dqmm7nk7j17g9n219hz11yx0pi"; depends=[pracma Rcpp signal]; }; - RestRserve = derive2 { name="RestRserve"; version="1.2.1"; sha256="1xfcp0y9l31815g1jk33mnkb6z68qpjl0gb4fj7f4578kx3v1c8p"; depends=[checkmate digest jsonlite mime R6 Rcpp Rserve uuid]; }; + RestRserve = derive2 { name="RestRserve"; version="1.2.3"; sha256="0d5ppgasaqpgvdi1spxlhp4ywpafbphlhkqfcfvgxrdm6y9igl2c"; depends=[checkmate digest jsonlite mime R6 Rcpp Rserve uuid]; }; RestoreNet = derive2 { name="RestoreNet"; version="1.0.1"; sha256="1lgdx6kqd5hqrj36p3vhgy42haj74dwb75gdjka61ms4j7l514hf"; depends=[ggplot2 Matrix RColorBrewer scales scatterpie stringr xtable]; }; RevEcoR = derive2 { name="RevEcoR"; version="0.99.3"; sha256="1nym263ynjdir5kxv35jnmki9mshlplq0sk3xnjd4ac6f1cfbfqj"; depends=[gtools igraph magrittr Matrix plyr purrr stringr XML]; }; RevGadgets = derive2 { name="RevGadgets"; version="1.2.1"; sha256="02f4wrm6b99s7dwqn5xlsynlfh5clpcgv6dh4d35xj7x71l2h7cv"; depends=[ape deeptime dplyr ggimage gginnards ggplot2 ggplotify ggpp ggtree phytools png reshape scales tibble tidyr tidytree treeio]; }; + RevSD = derive2 { name="RevSD"; version="0.1.1"; sha256="1wqcfpqd0rm6cbr7nfx85890rhl25aixyvf8kg205z5931c3z710"; depends=[]; }; ReviewR = derive2 { name="ReviewR"; version="2.3.10"; sha256="1h5vgqxvx5cjcwgrj7ayc7b1xzkgyndif46pjfmaz4pw1sz8990h"; depends=[bigrquery config DBI dbplyr dplyr DT gargle glue golem httr jsonlite magrittr purrr redcapAPI REDCapR rlang RPostgres RSQLite shiny shinycssloaders shinydashboard shinydashboardPlus shinyjs shinyWidgets snakecase stringr tibble tidyr]; }; Revticulate = derive2 { name="Revticulate"; version="1.0.0"; sha256="00pz8nnbl7dcbbqw8kdbdai1i3jc941l42nppaa1kxk6i3dci7gs"; depends=[ape comprehenr jsonlite knitr rstudioapi stringr usethis]; }; Rexperigen = derive2 { name="Rexperigen"; version="0.2.1"; sha256="158ksnd1gvzq7ii0ys2v0wrfnr001hni0i8m77p1fn1arixgmqdw"; depends=[digest jsonlite RCurl]; }; @@ -4794,7 +4876,8 @@ in with self; { Rfacebook = derive2 { name="Rfacebook"; version="0.6.15"; sha256="0hp2mbm0hnyasizszvh5x9hv7z2q633zck1a1gvk36nbxb1shx7c"; depends=[httpuv httr rjson]; }; Rfast = derive2 { name="Rfast"; version="2.1.0"; sha256="1zqq4k85i0nbzndkh0iiq3k83ly0mpl3pn4wkka6qxfvk6n6rr7r"; depends=[Rcpp RcppArmadillo RcppParallel RcppZiggurat]; }; Rfast2 = derive2 { name="Rfast2"; version="0.1.5.2"; sha256="125j6qk405i2wjpcyq0x6dmabns8iybqk9g3f43mk6j08n7fgfp1"; depends=[Rcpp RcppArmadillo RcppParallel Rfast Rnanoflann]; }; - Rfit = derive2 { name="Rfit"; version="0.24.6"; sha256="0b4gdy54zbbc8zr0krv34ggxnqncgj2hxzqjfg6j21apn7qsv8r2"; depends=[]; }; + Rfit = derive2 { name="Rfit"; version="0.27.0"; sha256="1wmp2xx8lcap7aags8zv9p7h2d051wfq9dbsb4n34j0ngc4hyg0s"; depends=[]; }; + Rfmtool = derive2 { name="Rfmtool"; version="5.0.4"; sha256="17rblvpybnsphvv7gph9pplf6d0wp9d99ni3ird1wyjm4nvvi1zv"; depends=[Rcpp]; }; Rfolding = derive2 { name="Rfolding"; version="1.0"; sha256="15lf73zxr1slin9faj9k0z8qkb1g9nb7h080nfv99gsi2ks68ssg"; depends=[]; }; Rforestry = derive2 { name="Rforestry"; version="0.10.0"; sha256="1h5bnaakpig7b2041s43kfljywdbdq6kkvv3agld2953nn8kcbw3"; depends=[glmnet onehot pROC Rcpp RcppArmadillo RcppThread visNetwork]; }; Rfractran = derive2 { name="Rfractran"; version="1.0.1"; sha256="1z1wba2xyas2sa9ny0ii8yd5v5ip8ajxf5szgf3r92cfv3r1s0nj"; depends=[gmp]; }; @@ -4811,19 +4894,19 @@ in with self; { Riemann = derive2 { name="Riemann"; version="0.1.4"; sha256="1a3mlfgnzdvl5x1nqnmm4v3xb2nkdq87c21m6xyxbm7zh5vx5b6m"; depends=[CVXR DEoptim lpSolve maotai Matrix Rcpp RcppArmadillo Rdimtools Rdpack RiemBase T4cluster]; }; Riex = derive2 { name="Riex"; version="1.0.2"; sha256="03627dik6dd9d2kwv757zanh0i4invmcwg162m9ayhv41ygj5z1l"; depends=[dplyr ggplot2 httr purrr quantmod rjson stringr tibble tidyr TTR urltools xts zoo]; }; Rigma = derive2 { name="Rigma"; version="0.2.1"; sha256="0h0fblnsbrkkvd0cimywa3gq4q7ay9p39f7x2rpis58kj28ra6fn"; depends=[bslib checkmate dplyr fs glue httr2 lubridate magrittr png purrr rlang tibble tidyr withr xml2]; }; - Rilostat = derive2 { name="Rilostat"; version="2.0.0"; sha256="058nz42ky5xj5lwxmr2gikpyfjmyzwlszvbamqdmz03pf479zgps"; depends=[data_table dplyr haven plyr readr stringr tibble xml2]; }; + Rilostat = derive2 { name="Rilostat"; version="2.1.0"; sha256="1h4vp6gim5swiy07fhf6l4agh6pi0vlz2f778s2rzsgqc4jdnawj"; depends=[data_table dplyr haven plyr readr stringr tibble]; }; Rirt = derive2 { name="Rirt"; version="0.0.2"; sha256="0npd2g3a4dh5hlj6l06k1pf0j4731ybqqd4mpi4id16nf81cg104"; depends=[ggplot2 Rcpp reshape2]; }; Risk = derive2 { name="Risk"; version="1.0"; sha256="1i42xcc699syj108mvgklwb30wkf9c9jrg5rmd2ypnqk9mnyg2fg"; depends=[]; }; RiskPortfolios = derive2 { name="RiskPortfolios"; version="2.1.7"; sha256="07mhn8imn4y8kf50x2g7i55dyksh0sryjkzb09rkf64x49vq7ban"; depends=[MASS nloptr quadprog]; }; RiskScorescvd = derive2 { name="RiskScorescvd"; version="0.1.0"; sha256="1lh0ag5k72msvj2pg3v2ajvwysjd638hxbifqklvsv5qjv7hzwfy"; depends=[dplyr PooledCohort]; }; Rita = derive2 { name="Rita"; version="1.2.0"; sha256="0qc969pjs7bn8c7alisqb2pvba22kkvd3lsfqz5wnrpy311s4jxr"; depends=[lattice]; }; Ritc = derive2 { name="Ritc"; version="1.0.2"; sha256="03smhxjhjfkc9pxhlgg54b6v2jznpmnws8373qpvn9a9ky5bcq2l"; depends=[minpack_lm]; }; - RivRetrieve = derive2 { name="RivRetrieve"; version="0.1.4"; sha256="0ghg329qszrcr5s36243l0h8qbkh3sd5jpgnm059dd81sgcsa0qc"; depends=[BBmisc dataRetrieval devtools dplyr httr jsonlite lubridate readr rlang rlist RSelenium rvest stringr tibble tidyhydat tidyr]; }; + RivRetrieve = derive2 { name="RivRetrieve"; version="0.1.5"; sha256="1lrm5rmnn9wk5r1xfmlnhgfwjz1s0kyck9iy71fc01d2b37lh6wz"; depends=[BBmisc dataRetrieval devtools dplyr httr jsonlite lubridate readr rlang rlist RSelenium rvest stringr tibble tidyhydat tidyr]; }; RiverBuilder = derive2 { name="RiverBuilder"; version="0.1.1"; sha256="06cd1m4liv2bsh2sxplq2zl45g9zq8gsgvh14d0zr0pqm8z4dsyw"; depends=[]; }; Rivivc = derive2 { name="Rivivc"; version="0.9.1"; sha256="0vbnkid5cp9af0m2kk3cblb3fr69llzmk6ckjy1brgyvrrmw5hz3"; depends=[signal]; }; RkMetrics = derive2 { name="RkMetrics"; version="1.3"; sha256="1k6vnr1r4h69iznib638z45gd0f8wc4g4h0ji9f0017883g77li1"; depends=[]; }; Rlab = derive2 { name="Rlab"; version="4.0"; sha256="019rmciqza5rd5z9hvh8xk20c2rjhzyzp1k5731qm1d3jz5lwx5k"; depends=[]; }; - Rlabkey = derive2 { name="Rlabkey"; version="3.2.0"; sha256="0knnfz9pp4licn0j771f9fyh1y689qw0yvjdfdnr6fii71x0in6l"; depends=[httr jsonlite Rcpp]; }; + Rlabkey = derive2 { name="Rlabkey"; version="3.2.2"; sha256="1s7j9vcy0mb358wk0rdc73g94i1xpi3cwxw33gsw0cvga4pmhk6s"; depends=[httr jsonlite Rcpp]; }; Rlgt = derive2 { name="Rlgt"; version="0.2-1"; sha256="0hrqishf056d8nivm2rya2xxpdzmn69ajnxdp9w39fhdfjhzv90p"; depends=[BH forecast Rcpp RcppEigen RcppParallel rstan rstantools sn StanHeaders truncnorm]; }; Rlibeemd = derive2 { name="Rlibeemd"; version="1.4.3"; sha256="1r3yqs9pc1mllwvw8asppr59kxvmw8dd15wbvn57ngij7kq6aj1l"; depends=[Rcpp]; }; Rlibkdv = derive2 { name="Rlibkdv"; version="1.1"; sha256="1lcmnc50bfnrnw03bs3lsxdsj2n3qylfw51w6kvnz9x1qmr9p54p"; depends=[leaflet magrittr raster Rcpp sf]; }; @@ -4838,20 +4921,21 @@ in with self; { Rmixmod = derive2 { name="Rmixmod"; version="2.1.10"; sha256="12gi18zkbzi4qb4qk12dbwm1skcyjaydp1g8nm2bfsj5db1r5mcn"; depends=[Rcpp RcppEigen]; }; Rmodule = derive2 { name="Rmodule"; version="1.0"; sha256="0vbxazms3qmkhc40fb3hbyk84vrv31pmxl756wnm40z3p7l43kzk"; depends=[Matrix Rcpp RcppArmadillo]; }; Rmolt = derive2 { name="Rmolt"; version="1.0.0"; sha256="0fmis81h4c16wpwx6g60szf9d1gyvi60md2gn2mqln9gcf7w0icy"; depends=[]; }; - Rmonize = derive2 { name="Rmonize"; version="1.0.1"; sha256="1xyk56lh6w1yiy33sga1shnf3q8zfl3qz4zycf13sddjgzkwmzby"; depends=[crayon dplyr fabR fs haven madshapR rlang stringr tidyr]; }; + Rmonize = derive2 { name="Rmonize"; version="1.1.0"; sha256="0k9v0larxg35vnq65ybzp9nf5w860vqp7m0jf4q4ax58vj6f17yw"; depends=[crayon dplyr fabR fs haven lifecycle madshapR rlang stringr tidyr]; }; Rmosek = derive2 { name="Rmosek"; version="1.3.5"; sha256="18q39n2p3gms9zqrl8g15rjjk4v64365v0rm8r7zvvivh1hy5xa0"; depends=[]; }; Rmpfr = derive2 { name="Rmpfr"; version="0.9-5"; sha256="06zkllbdaddq3jq03k926gfjcijvcysfrqhh76hjklzwkrra5sdw"; depends=[gmp]; }; Rmpi = derive2 { name="Rmpi"; version="0.7-2"; sha256="1vrf6bakx9i73sdgggpxzl1lxjn68b8pwvmk69d56lnya2gzm4c5"; depends=[]; }; Rmst = derive2 { name="Rmst"; version="0.0.3"; sha256="1fykpii17k460qlsjhhh5vag02lhkyk5l3zjmg8hifqp0cjhz2fl"; depends=[ggplot2 Rata reshape2 Rirt]; }; - Rnanoflann = derive2 { name="Rnanoflann"; version="0.0.2"; sha256="1h978qaag2ylcdaxm70lzqcix3wlba64vfccws9nvm3d0ymdj7jl"; depends=[Rcpp RcppArmadillo]; }; + Rnanoflann = derive2 { name="Rnanoflann"; version="0.0.3"; sha256="04bjyn74n1qlqb58w5nwvahbd5dg872bd5x3iwfvg3qgci6giz26"; depends=[Rcpp RcppArmadillo]; }; RnavGraphImageData = derive2 { name="RnavGraphImageData"; version="0.0.4"; sha256="1k1gnkghap878fck0bbz9mm0fr4cli6lh1d11r0cf47fvl6cc4gr"; depends=[]; }; + Rnest = derive2 { name="Rnest"; version="0.0.0.1"; sha256="0fj1a1qsc8v238nv1dsrdw1398ah3qpf5dgimdgipkznb5dnjjc7"; depends=[crayon EFA_MRFA fungible ggplot2 MASS scales]; }; Rnightly = derive2 { name="Rnightly"; version="0.1.0"; sha256="08sb4ic7my8b6xcjn9vim8wp4z3kvk0gyp604dg1az7czc7ics5r"; depends=[glue htmltools]; }; Rnmr1D = derive2 { name="Rnmr1D"; version="1.3.2"; sha256="0apkwrsxcp2frq9lmfn70dn2ajaiswnbvfjmqc7lbrimya3pwznb"; depends=[base64enc doParallel foreach ggplot2 igraph impute MASS MassSpecWavelet Matrix minqa plotly plyr ptw Rcpp scales signal XML]; }; Rnumerai = derive2 { name="Rnumerai"; version="3.0.1"; sha256="0pwb7yk79zbmcrpa9fw1i7yjvr5md2nn67rsl1i1sbjkd1rgg0vd"; depends=[ghql httr jsonlite lubridate]; }; Rnvd3 = derive2 { name="Rnvd3"; version="1.0.0"; sha256="13l5vcbcm88jfsc11ijkvr1s8qk8fflclazs4kl1k2wzpnlr6z6a"; depends=[data_table htmltools htmlwidgets jsonlite lazyeval lubridate viridisLite]; }; RoBMA = derive2 { name="RoBMA"; version="3.1.0"; sha256="0cq1hjm49sj4lnzvninf6wlpm0p0rbw3mk6sa36167b6snr6rra2"; depends=[BayesTools ggplot2 mvtnorm Rdpack rjags rlang runjags scales]; }; RoBSA = derive2 { name="RoBSA"; version="1.0.2"; sha256="1hk4pdkgqjqhn7wxzzgw1f1rz4kk3gri7wispzz0m3nxk7bksw6b"; depends=[BayesTools coda Rdpack rjags rlang runjags scales survival]; }; - RoBTT = derive2 { name="RoBTT"; version="1.2.1"; sha256="1c97cvbqrf5q5axycxsywqg7x198nxrs4xrqy9lh2isips3das6g"; depends=[BayesTools BH bridgesampling ggplot2 Rcpp RcppEigen RcppParallel Rdpack rstan rstantools StanHeaders]; }; + RoBTT = derive2 { name="RoBTT"; version="1.3.0"; sha256="00yrl6l6pz1y8j5qwhvwg84lcxvisp578i9fsd3iv9f3hfhsw9nh"; depends=[BayesTools BH bridgesampling ggplot2 Rcpp RcppEigen RcppParallel Rdpack rstan rstantools StanHeaders]; }; RobAStBase = derive2 { name="RobAStBase"; version="1.2.5"; sha256="16sl3nlb1cl3xyski05l0qhrl23w615sbdmvnnzxnkva6sppxqcx"; depends=[distr distrEx distrMod RandVar rrcov startupmsg]; }; RobAStRDA = derive2 { name="RobAStRDA"; version="1.2.1"; sha256="156cdx2l3q5ccaan3knfb4khsmr0n2vf7j7yiq5z24z493l2g65w"; depends=[]; }; RobExtremes = derive2 { name="RobExtremes"; version="1.3.0"; sha256="0dziaykrnhy8ijbq0pxwl5p9xjlbz3kxkmwl3s21kmjnv7nm8sx4"; depends=[actuar distr distrEx distrMod evd RandVar RobAStBase RobAStRDA robustbase ROptEst startupmsg]; }; @@ -4861,13 +4945,15 @@ in with self; { RobLoxBioC = derive2 { name="RobLoxBioC"; version="1.2.2"; sha256="1fhf5svfb1sf792aj9xydaj8r9d99ia68b9n5g4nha1ia8jcixwl"; depends=[affy AnnotationDbi beadarray Biobase BiocGenerics distr distrMod lattice RColorBrewer RobLox]; }; RobMixReg = derive2 { name="RobMixReg"; version="1.1.0"; sha256="13w6zvncwh561wzzqy548x0w25rnzf0pfvi5cc6mzn71x5l7cmh2"; depends=[dplyr flexmix glmnet gplots gtools lars MASS RColorBrewer rlang robust robustbase scales]; }; RobPer = derive2 { name="RobPer"; version="1.2.3"; sha256="0zhn7lwh3lb9na9h59air2idc3nibjdw2mfgg9qa5h27p9amm1l7"; depends=[BB quantreg rgenoud robustbase]; }; + RobRegression = derive2 { name="RobRegression"; version="0.1.0"; sha256="11mlxqvrlf8wlmwa44jcp3rxac7yykwa1n0fsmn861zl9b4969y8"; depends=[capushe DescTools doParallel fastmatrix foreach KneeArrower mvtnorm Rcpp RcppArmadillo RSpectra]; }; RobStatTM = derive2 { name="RobStatTM"; version="1.0.8"; sha256="1qbbh3ykba50ivka1h7b2cyw2km0dk3gl1rgjwaq5rqlmfdwl0nn"; depends=[pyinit robustbase rrcov]; }; + RobinCar = derive2 { name="RobinCar"; version="0.3.0"; sha256="0pyp73fk871ka85ci2il7cmb2g7cqrj7c53k73x5yr1kp51srxb0"; depends=[AIPW broom data_table dplyr emulator fastDummies magrittr MASS numDeriv rlang SuperLearner survival tidyr tidyverse]; }; RobinHood = derive2 { name="RobinHood"; version="1.7.0"; sha256="0h8mws0wpyxvnjffrili53daz9bvvgm6lbgwqyzc0kd12radj2d0"; depends=[dplyr httr jsonlite lubridate magrittr profvis uuid]; }; RobustAFT = derive2 { name="RobustAFT"; version="1.4-7"; sha256="1i000j6d4s0yb99dxyq610a1znkiai9xc9l16wdb7lmnrhixz5qp"; depends=[DEoptimR robustbase survival]; }; RobustANOVA = derive2 { name="RobustANOVA"; version="0.3.0"; sha256="1kpvahxipcmsqk6mv2zagcvw0glmsj0xkpf6f3gjnckin6mxnjyv"; depends=[optimbase PEIP]; }; RobustBF = derive2 { name="RobustBF"; version="0.2.0"; sha256="137lsk72sx29lhkc1s698k015vvbmdzb23i8pnlk5204bjfqzch8"; depends=[]; }; RobustBayesianCopas = derive2 { name="RobustBayesianCopas"; version="2.0"; sha256="0cbibfp4y45cc1disp2r37v0jln0cd9gy3d77z3k9ybj1gg8wa88"; depends=[rjags statip]; }; - RobustCalibration = derive2 { name="RobustCalibration"; version="0.5.4"; sha256="0qa2krbi1av4dxfw9sb2gl9sif3smllk1yvsrh58ncag729vnv5y"; depends=[nloptr Rcpp RcppEigen RobustGaSP]; }; + RobustCalibration = derive2 { name="RobustCalibration"; version="0.5.5"; sha256="0ilbj88bgjymyyn7jh7dnxhhba7xrmpsnhkwr1cr53zd9rpywfdf"; depends=[nloptr Rcpp RcppEigen RobustGaSP]; }; RobustGaSP = derive2 { name="RobustGaSP"; version="0.6.6"; sha256="1pcy0n4krshjw9c4g41m7487qydrjbh45yqg77i74s5bvwd47fnp"; depends=[nloptr Rcpp RcppEigen]; }; RobustIV = derive2 { name="RobustIV"; version="0.2.5"; sha256="1iz5g0ynkx38vdsf7rm8haai7a8igw3rdqrgxllahnbykwhm4d51"; depends=[CVXR glmnet igraph intervals MASS Matrix]; }; RobustLinearReg = derive2 { name="RobustLinearReg"; version="1.2.0"; sha256="06137f516gyj64qdmwby7m1xnvj4hxzpqj454jn0xcinvl89380w"; depends=[]; }; @@ -4900,7 +4986,7 @@ in with self; { Rraven = derive2 { name="Rraven"; version="1.0.13"; sha256="0nlqr1hzbzbz4rb3hjy01iw8czhaqvwmy9hh728fgl5vajwqwn8g"; depends=[NatureSounds pbapply seewave tuneR warbleR]; }; Rrdap = derive2 { name="Rrdap"; version="1.0.7"; sha256="0rq62hqdxdp8sn6s5xk651ibhf0854hvm22c3iad3zw63f5v23f2"; depends=[curl rjson stringr]; }; Rrepest = derive2 { name="Rrepest"; version="1.3.0"; sha256="0j2siwnpp8isgb82qq9s1khjgnhgfygm8487grflw8qniz22cq5f"; depends=[data_table doParallel dplyr flextable foreach labelled magrittr officer purrr stringr tibble tidyr]; }; - RsSimulx = derive2 { name="RsSimulx"; version="2023.1"; sha256="0j48d94r68lzjpkak67q455q09ivp9fnkcsbqh8qziikzglf2ac5"; depends=[ggplot2 gridExtra]; }; + RsSimulx = derive2 { name="RsSimulx"; version="2024.1"; sha256="1y0vzzn6a5z8379q807lpv4dsmnrqng5llk7zkwy5n7p06xvly7i"; depends=[ggplot2 gridExtra]; }; Rsagacmd = derive2 { name="Rsagacmd"; version="0.4.2"; sha256="08xj6dinqnr9ir0ljz0ybyh3wqsbw5hdp27xfvcmc8vi48gf4rlj"; depends=[foreign generics processx rlang rvest sf stars stringr terra tibble]; }; Rsampling = derive2 { name="Rsampling"; version="0.1.1"; sha256="14rp3j7iaii4rc3jkbijmbgvlagxxqjkz3vvfwwpxix43rsi8zsk"; depends=[]; }; Rsconctdply = derive2 { name="Rsconctdply"; version="0.1.3"; sha256="12xc1laxgivv4szp8341pvhmxnzzzzc2s4jhnqsqrbx71lbd9szg"; depends=[dplyr rjson rsconnect]; }; @@ -4908,7 +4994,7 @@ in with self; { Rsfar = derive2 { name="Rsfar"; version="0.0.1"; sha256="1xskvvvavkdyjhb99qlii9qc0q1m36mxx6g0ybgwbq26lq4ypq7l"; depends=[fda]; }; Rsgf = derive2 { name="Rsgf"; version="1.0.0"; sha256="1d2bk20ixnfkzbimvsj56arf7brgkwlyrs80snfn5cnvmwic0h8i"; depends=[ggplot2 png stringi stringr]; }; RsimMosaic = derive2 { name="RsimMosaic"; version="1.0.3"; sha256="0jlzrs9xxlpazvq3iw8znk0bd00bzlry7bgxsxq7xl23akizj0ji"; depends=[fields jpeg RANN]; }; - Rsmlx = derive2 { name="Rsmlx"; version="2023.1.5"; sha256="1fb4dqnrbdvqbsfk2hnkfwdaiprpyj39kwxz49ywj7h9k4g9lgcw"; depends=[dplyr ggplot2 gridExtra MASS tidyr]; }; + Rsmlx = derive2 { name="Rsmlx"; version="2024.1.0"; sha256="1y4pgyk0njvlgbxm0hncxjjkrfb1b10c5k7hdy4zmryz3421677j"; depends=[dplyr ggplot2 gridExtra MASS tidyr]; }; Rsolnp = derive2 { name="Rsolnp"; version="1.16"; sha256="0w7nkj6igr0gi7r7jg950lsx7dj6aipgxi6vbjsf5f5yc9h7fhii"; depends=[truncnorm]; }; Rsomoclu = derive2 { name="Rsomoclu"; version="1.7.6"; sha256="1jbi4nib0a749k7vkqzhdb5l2jipxq9k8vi5x7i06qns8sb3ajil"; depends=[kohonen Rcpp]; }; Rspc = derive2 { name="Rspc"; version="1.2.2"; sha256="1cnzqpnh009wfs51dc4id9q3giaa8b6dc75b1lhzpwcvw0cxcy4y"; depends=[]; }; @@ -4918,6 +5004,7 @@ in with self; { Rstg = derive2 { name="Rstg"; version="0.0.1"; sha256="1rghac9sjld03rw1sbq2r7rs2fzf3a2xikjb47cfdnk1r73ziysf"; depends=[reticulate]; }; Rsurrogate = derive2 { name="Rsurrogate"; version="3.2"; sha256="0xl3hgl09zcign5q6424wlmg93r0s73gvj0ak5q75dajyv0knz3y"; depends=[Matrix survival]; }; Rsymphony = derive2 { name="Rsymphony"; version="0.1-33"; sha256="1y2jcpzi8zn6rxwmp3gxyyk8nq204ri8vv6p4552hb55nnvqvc8s"; depends=[]; }; + Rtapas = derive2 { name="Rtapas"; version="1.2"; sha256="0vcd3zbrckmszj1w8jrjybym0y4dfaljajdr48fbx0x52cqly865"; depends=[ape distory paco parallelly phytools stringr vegan]; }; Rtauchen = derive2 { name="Rtauchen"; version="1.0"; sha256="09282k6qsjxgm26682npfjymmbx5g8flcc44awmkjl2k4fa1q9ha"; depends=[]; }; Rthingsboard = derive2 { name="Rthingsboard"; version="0.2.7"; sha256="165yx215vmsx3r5zqzh0awf5jzznxsapq49c3q5qrhcircbnjfcg"; depends=[dplyr httr logger]; }; Rtnmin = derive2 { name="Rtnmin"; version="2016-7.7"; sha256="0f8ii87v29v61b93hx2yxdppp3nvgnl5imp80sbb4bjsdg0mf989"; depends=[]; }; @@ -4927,9 +5014,10 @@ in with self; { Rttf2pt1 = derive2 { name="Rttf2pt1"; version="1.3.12"; sha256="10x580dnzddm9z045gya5ya01d10s9mpp0fy8ilrldlh74q7ljqb"; depends=[]; }; Rtumblr = derive2 { name="Rtumblr"; version="0.1.0"; sha256="19vl079icyh615ac8wxw810dfqlj3c1lpr0gjkkc030jpl2g0yzr"; depends=[dplyr httr tibble]; }; Rtwalk = derive2 { name="Rtwalk"; version="1.8.0"; sha256="0zxf66lsfq8by40flv34xzd5yy0wa1ah9li1d0h7f0yh9nbwhxl5"; depends=[]; }; + Rtwobitlib = derive2 { name="Rtwobitlib"; version="0.3.6"; sha256="0mww366wpa7r4wfm6i03nh5y9z2vdsdl36ry2h8njj8w8h2wd80c"; depends=[]; }; Runuran = derive2 { name="Runuran"; version="0.38"; sha256="1fjr9pbjih6ahbsd557p3d5j8klj11wnnn7jkhjcry1spwlzdkhr"; depends=[]; }; Rvcg = derive2 { name="Rvcg"; version="0.22.2"; sha256="077p4c16nqi6ayxv1i31cr6sw9fwnxpmfkmrrhzh02khpi2c2jg5"; depends=[Rcpp RcppArmadillo RcppEigen]; }; - Rveg = derive2 { name="Rveg"; version="0.1.3"; sha256="0r4q5iyfi9f95kzmhjgy1jdiv85wr16m5yhgq9zz36sjs4miif2m"; depends=[dplyr]; }; + Rveg = derive2 { name="Rveg"; version="0.1.4"; sha256="1a4cb19gvq1lm2v918pskpfpxl4xqb06hm08wacv7gj4wyvj7adi"; depends=[dplyr]; }; Rwave = derive2 { name="Rwave"; version="2.6-5"; sha256="1r72kcc5f9k38ks39nh9x1y7k1kxrbyv7lywqpsy7wknnddzg7kc"; depends=[]; }; Rwclust = derive2 { name="Rwclust"; version="0.1.0"; sha256="0c7q2i9n22sqj3wq9m0j49y5h14848myjbixrdkic8lvv91dm438"; depends=[checkmate Matrix]; }; RweaveExtra = derive2 { name="RweaveExtra"; version="1.1-0"; sha256="0w2ih5v1xa8v3z2xqy8mvl1f36jdrb56mpnvijgk3cbwk317dg9i"; depends=[]; }; @@ -4954,13 +5042,12 @@ in with self; { SAMBA = derive2 { name="SAMBA"; version="0.9.0"; sha256="0gxc1s82bfhqj1rpmp0fm87frv77rgr8qjqai7zdgfz3jm474any"; depends=[optimx survey]; }; SAME = derive2 { name="SAME"; version="0.1.0"; sha256="0v7x1zl8y81affdp0cs9xxzm03xy9pg8wh9kljwmdq3anmaqhqfg"; depends=[boot coda expint extraDistr ggplot2 rjags survival]; }; SAMGEP = derive2 { name="SAMGEP"; version="0.1.0-1"; sha256="01f460vk60sl3f9cg2pqcpi5r2rayjhgsp73w1ik1g4rhrs4bl9s"; depends=[abind doParallel foreach mvtnorm nlme nloptr pROC Rcpp RcppArmadillo]; }; - SAMM = derive2 { name="SAMM"; version="1.1.1"; sha256="175jk3s9w68ccw1h019380lp9cajfsy3zigcnplp87pcn3qg7x2i"; depends=[Rcpp RcppArmadillo]; }; SAMTx = derive2 { name="SAMTx"; version="0.3.0"; sha256="18r03w74fcra3c0xa76jnkkms9pjirdmgb2k1dnz7symqf9cvc5l"; depends=[BART]; }; SAMUR = derive2 { name="SAMUR"; version="1.1"; sha256="1ihxr455hxpk3mz113j7ai36lw9i4v60yd4x50j7npzcpq5r0mwk"; depends=[Matching]; }; SAMprior = derive2 { name="SAMprior"; version="1.1.1"; sha256="1xp3wvgjp9252l8w42fsr61bh6ggs3b21df182rw3irh2ijn1mc0"; depends=[assertthat checkmate ggplot2 Metrics RBesT]; }; SAMtool = derive2 { name="SAMtool"; version="1.6.4"; sha256="187j6i0giq45mgg1bb33ssiryipdk7ahc8jpimij3icxy9v73d4b"; depends=[abind dplyr gplots MSEtool pbapply RcppEigen rmarkdown snowfall TMB vars]; }; - SANple = derive2 { name="SANple"; version="0.1.0"; sha256="1ss9p8pw5k1rp8xap98bd587xfhr006xwbf85c1az3rc1p4rji77"; depends=[RColorBrewer Rcpp RcppArmadillo RcppProgress salso scales]; }; - SANvi = derive2 { name="SANvi"; version="0.1.0"; sha256="1rcg5j8gvcz1wi2qzhsblb7ml8l6hiimyzpk2bkl6hicrgjrzi66"; depends=[matrixStats RColorBrewer Rcpp RcppArmadillo scales]; }; + SANple = derive2 { name="SANple"; version="0.1.1"; sha256="1v3yhhfj93zwvngplpfxrrysrfjkyv5hfz02fgjl8fvxsif1dq0g"; depends=[RColorBrewer Rcpp RcppArmadillo RcppProgress salso scales]; }; + SANvi = derive2 { name="SANvi"; version="0.1.1"; sha256="17sb8gq4nnjn0zqgdi7xs749i8f46gswkmj0skh89hlq5m3kvrv4"; depends=[matrixStats RColorBrewer Rcpp RcppArmadillo scales]; }; SAP = derive2 { name="SAP"; version="1.0"; sha256="129szqkh4snlqn5q09yaqf6sd04nvai3a0ifk0b36yrqj92v6fd1"; depends=[BSDA]; }; SAPP = derive2 { name="SAPP"; version="1.0.9-1"; sha256="1ngyxgmb13rcgzblpa7v6v390pyymglvvb4j8x7z4038v24s7qj6"; depends=[]; }; SAR = derive2 { name="SAR"; version="1.0.3"; sha256="1cnf0hsq82lzssvz5xs2abvnrjxda0g6mjx70a1j223zdwjqmw64"; depends=[AzureRMR AzureStor dplyr httr jsonlite Matrix R6 Rcpp RcppArmadillo RcppParallel]; }; @@ -4971,10 +5058,11 @@ in with self; { SASmarkdown = derive2 { name="SASmarkdown"; version="0.8.2"; sha256="0xrrmb2zmm0mdg4akm5rnzbxxx690w9mv90mp830kbs42i0haqqg"; depends=[knitr xfun]; }; SASmixed = derive2 { name="SASmixed"; version="1.0-4"; sha256="0491x4a3fwiy26whclrc19alcdxccn40ghpsgwjkn9sxi8vj5wvm"; depends=[]; }; SAVER = derive2 { name="SAVER"; version="1.1.2"; sha256="1s1kw8idkaj7j90fw4qn9k0wd4vz0sblsk06ry6lm4afcar0p158"; depends=[doParallel foreach glmnet iterators Matrix]; }; - SAiVE = derive2 { name="SAiVE"; version="1.0.4"; sha256="1k77671ycw9152lnj25mx634cmgqhnpppfyvdxsvmwgjshhp57fb"; depends=[caret crayon doParallel proxy rlang terra VSURF]; }; + SAiVE = derive2 { name="SAiVE"; version="1.0.6"; sha256="08f6icmr4x6kn0d7r98v9cmjqbfqgp1hzya68bl8p9fzfkjnmg4k"; depends=[caret crayon doParallel proxy rlang terra VSURF]; }; SAutomata = derive2 { name="SAutomata"; version="0.1.0"; sha256="0d9q7bm2f7s4aslml40n43vwcdkc8rnn9ygydccwi4b9a7y23k58"; depends=[]; }; SBAGM = derive2 { name="SBAGM"; version="0.1.0"; sha256="0vb1679016b0bhz2xlka9wgr2fxwa0447ymfncm1n5fks60rrnnf"; depends=[forecast MSGARCH rugarch]; }; SBCK = derive2 { name="SBCK"; version="1.0.0"; sha256="1z5svxa639245jmv3bsikmbch8j4j51d7rjwhj62zcaxhb3ykhcs"; depends=[R6 Rcpp RcppEigen ROOPSD transport]; }; + SBI = derive2 { name="SBI"; version="0.1.0"; sha256="1m4s0qmk1z3npxk952w57dxrp4asb9ixx0clxh7xjl24kvymrnrs"; depends=[]; }; SBICgraph = derive2 { name="SBICgraph"; version="1.0.0"; sha256="04c9xb9fdxz62qdsfkdkckvfpccrc7n5j3j5v1lgjywxq6l78wsm"; depends=[glmnet MASS network]; }; SBMSplitMerge = derive2 { name="SBMSplitMerge"; version="1.1.1"; sha256="1h44qwz9gkwwgkac25h4vn0kq3mjvjsyq99yfd8v8g6g8fkkclaq"; depends=[ggplot2 reshape2 scales]; }; SBN = derive2 { name="SBN"; version="1.0.0"; sha256="1k4x8hzjrzvaxnq9z9rykc65lfp4x75nhjrfpk6llq9hqjms2n06"; depends=[igraph]; }; @@ -4986,6 +5074,7 @@ in with self; { SCBiclust = derive2 { name="SCBiclust"; version="1.0.1"; sha256="1vmymdrci4kynjb074c10sg27labx7axnlbb9dqhwby7s55a6c78"; depends=[sigclust sparcl]; }; SCBmeanfd = derive2 { name="SCBmeanfd"; version="1.2.2"; sha256="045498q71zqgcg8p3665vwd99a8ybf21y0sa7y8316zw66wb1caz"; depends=[boot KernSmooth]; }; SCCI = derive2 { name="SCCI"; version="1.2"; sha256="08ibazxiqmkm3n9g8bfp0cfq26zmg6x2fxb064g3z05nczsf72db"; depends=[Rcpp]; }; + SCCS = derive2 { name="SCCS"; version="1.7"; sha256="0cx7xw15pwkk2nza8ng4ic6mq07vgf5idcclkwdyp3ry5j3rqnvl"; depends=[corpcor fda gnm R_methodsS3 survival]; }; SCDB = derive2 { name="SCDB"; version="0.4.0"; sha256="0n6vmn7jjl8lp5yf53kxh2d3660sbwjnl7chiv4x7dkidi81lfnr"; depends=[checkmate DBI dbplyr dplyr glue lifecycle openssl parallelly purrr R6 rlang stringr tidyr tidyselect]; }; SCEM = derive2 { name="SCEM"; version="1.1.0"; sha256="1fxxkv965gb0wq06rclv05xxlzk8p9l8hzbnqcf0nbbymyn73fqr"; depends=[devtools mathjaxr]; }; SCEPtER = derive2 { name="SCEPtER"; version="0.2-4"; sha256="1098pvq3a7k9czxapszkakc8lr9sfvj7a643iivil5fcqfk0j50r"; depends=[MASS]; }; @@ -4999,7 +5088,7 @@ in with self; { SCOPRO = derive2 { name="SCOPRO"; version="0.1.0"; sha256="08pxr7kn2d77g614s6rb2qbd8g5vf6b2w1pwcp9i191b524n844p"; depends=[ggplot2]; }; SCOR = derive2 { name="SCOR"; version="1.1.2"; sha256="0isws2ajla2nhdg5hhfab0s5ihihm4w8h6zyvncapchfaj2c8vmf"; depends=[doParallel foreach iterators]; }; SCORNET = derive2 { name="SCORNET"; version="0.1.1"; sha256="13aibikvrc3ril4gqki4fk4y7ha85bniqabmaifzbr1dw5xy2wxm"; depends=[doParallel foreach Matrix pracma Rcpp RcppArmadillo survival]; }; - SCORPION = derive2 { name="SCORPION"; version="1.0.1"; sha256="1wixh89b591kwkncm2kbl1piai64wgnbfr106ylwlqwhj4a5xhjg"; depends=[cli igraph irlba Matrix pbapply RANN RhpcBLASctl]; }; + SCORPION = derive2 { name="SCORPION"; version="1.0.2"; sha256="0bkhg3y7irbigy14l9a747032ljhssvgcj1gdqs07p76k0x6fv5y"; depends=[cli igraph irlba Matrix pbapply RANN RhpcBLASctl]; }; SCORPIUS = derive2 { name="SCORPIUS"; version="1.0.9"; sha256="0i464i6fbxxcrvc48ajmz7i75sqfwizjypbbmc0mmj0dgmnxgby9"; depends=[dplyr dynutils dynwrap ggplot2 lmds MASS Matrix mclust pbapply pheatmap princurve purrr ranger RANN RColorBrewer reshape2 tidyr TSP]; }; SCOUTer = derive2 { name="SCOUTer"; version="1.0.0"; sha256="1s0mmzfz0zhr5v4wagcjwdba8a5f57xr26vwml92dnw6lai37pj4"; depends=[ggplot2 ggpubr]; }; SCRIP = derive2 { name="SCRIP"; version="1.0.0"; sha256="1cv8443y2s67q3krsyj7r2d1vqv01w8xr0iz8dz4kijmhksyg7ng"; depends=[BiocGenerics BiocManager checkmate crayon edgeR fitdistrplus knitr mgcv S4Vectors Seurat SingleCellExperiment splatter SummarizedExperiment]; }; @@ -5008,6 +5097,7 @@ in with self; { SCdeconR = derive2 { name="SCdeconR"; version="1.0.0"; sha256="0wp7l226hw75jgi9j7n4c2f0nxlrmi3z3iv5wi5vhflvndgr95ym"; depends=[Biobase data_table dplyr edgeR foreach ggplot2 glmGamPoi gtools harmony MASS Matrix mgcv NMF reshape2 Seurat]; }; SCperf = derive2 { name="SCperf"; version="1.1.1"; sha256="1kqi3sv9ds58l20pdcnjrrbf7fin82j73yqj5rbx4kjdw560ylb2"; depends=[]; }; SCpubr = derive2 { name="SCpubr"; version="2.0.2"; sha256="121q8f823rcmn56sz17d2khismvf9hnr3d7dwmjavxwy25bhb76b"; depends=[]; }; + SCtools = derive2 { name="SCtools"; version="0.3.3"; sha256="0mwpia145swzqgxfh0h6fzmd1v5jxwigbw2rqm4rmla60yapn5hz"; depends=[cvTools dplyr furrr future ggplot2 magrittr purrr stringr Synth tidyr]; }; SDAR = derive2 { name="SDAR"; version="0.9-55"; sha256="1a1dy4wpzhfaqxv4x8knazh4kjx042rnkmvxf62r6wkgbfvq4r6b"; depends=[grImport2 linbin readxl]; }; SDAResources = derive2 { name="SDAResources"; version="0.1.1"; sha256="13zb8sx7913wpj1jhi5sb0ps8fgzxfvjx75p218n166w54rxjqjs"; depends=[]; }; SDCNway = derive2 { name="SDCNway"; version="1.0.1"; sha256="0zmjc3xh4qvwyrq4ma2k6q08f4ny4iqnl5a640pj17jk8awzwbg0"; depends=[dplyr ggplot2 MASS plyr Rdpack]; }; @@ -5015,7 +5105,7 @@ in with self; { SDGdetector = derive2 { name="SDGdetector"; version="2.7.3"; sha256="0gm23f0xqw2cgig44d17qw2mfp685bz0dr8wrly4r90w44l121z9"; depends=[dplyr ggplot2 magick magrittr rnaturalearth scales stringr tidyr]; }; SDLfilter = derive2 { name="SDLfilter"; version="2.3.3"; sha256="0f565626kbi5rigsla5843rczmfi0hwmrwn2410smfhjvhywmlqy"; depends=[data_table dplyr emmeans geosphere ggmap ggplot2 ggspatial gridExtra lubridate maps pracma sf stars]; }; SDMtune = derive2 { name="SDMtune"; version="1.3.1"; sha256="0zzra0vig3gyz3b0h66fdlkpl2ii939d7k6p7ym5mzhz1vqdaljz"; depends=[cli dismo gbm ggplot2 jsonlite maxnet nnet randomForest Rcpp rlang rstudioapi stringr terra whisker]; }; - SDPDmod = derive2 { name="SDPDmod"; version="0.0.4"; sha256="03nwahpf3vd29jrr55ml3wxb8kcm9wf9mlzlbgv4yzadxmx6ybab"; depends=[Matrix plm RSpectra sf sp spdep]; }; + SDPDmod = derive2 { name="SDPDmod"; version="0.0.5"; sha256="1f136nb32y3lnnhyri03y8p5akc2c06g9rynx53w702fyi72bgy6"; depends=[Matrix plm RSpectra sf sp spdep]; }; SDPrism2D = derive2 { name="SDPrism2D"; version="0.1.1"; sha256="1f1k6lk0fh9dz11703fpbmvjl2gyq4y7l4khigl1h69j9xv97yf3"; depends=[]; }; SDT = derive2 { name="SDT"; version="1.0.0"; sha256="1jwpfd1pnzy9wcl90qv5bgwi19shsw9064dvml9zwbif8yw8dzjj"; depends=[quadprog]; }; SDaA = derive2 { name="SDaA"; version="0.1-5"; sha256="1gs29jaj46i2bhbnpa0s6bhdrylz1s6wnif5cyc5m7xl19s413gb"; depends=[]; }; @@ -5044,18 +5134,20 @@ in with self; { SGDinference = derive2 { name="SGDinference"; version="0.1.0"; sha256="13sqchniiq5d8k0rkilmn33lhl5lrqkswwny3zzk6d6alh6x7jh8"; depends=[Rcpp RcppArmadillo]; }; SGL = derive2 { name="SGL"; version="1.3"; sha256="055mx876ydg4kzvcm6rxfkxqz849zgzkzsskvrfgwj9fs1k6ja2v"; depends=[]; }; SGP = derive2 { name="SGP"; version="2.1-0.0"; sha256="1msz3ccgmmwwla70gwwichgzjhzym942wa6hw0imr5cgkm4hk0kq"; depends=[Cairo callr colorspace crayon data_table digest doParallel equate foreach gridBase gtools iterators jsonlite matrixStats plotly quantreg randomNames rngtools RSQLite sn svglite toOrdinal]; }; + SGPR = derive2 { name="SGPR"; version="0.1.2"; sha256="1bywllnf7gsk3gi3y77qshjd20735vf54g164qsxm3x1n7zjr0p3"; depends=[Rcpp]; }; SGPdata = derive2 { name="SGPdata"; version="27.0-0.0"; sha256="0d6lwxqp9ajzinfg258gaqr2k537v32f1gfn7565vsdrlp9miki3"; depends=[crayon data_table]; }; SHAPforxgboost = derive2 { name="SHAPforxgboost"; version="0.1.3"; sha256="0b3h6py80a0dmb8f8j4h7a7d0k6ld8l0qr24r8pxxy7dbqbyxh5x"; depends=[BBmisc data_table ggExtra ggforce ggplot2 ggpubr RColorBrewer xgboost]; }; - SHELF = derive2 { name="SHELF"; version="1.9.0"; sha256="1hqrkikvhsbzfbsy7ng4mal76fv4sr2xjzxf3gf2l7a4cwrf7nj1"; depends=[ggExtra ggplot2 ggridges gridExtra Hmisc rmarkdown scales shiny shinyMatrix tidyr]; }; + SHELF = derive2 { name="SHELF"; version="1.10.0"; sha256="0867d66iak8kb4mkbj16k5b5dm58xsk5djm7r1xha3m2f73yalvd"; depends=[ggExtra ggplot2 ggridges Hmisc rmarkdown scales shiny shinyMatrix sn tidyr]; }; SHT = derive2 { name="SHT"; version="0.1.8"; sha256="03mzjm0hx1i8jz7gam19zyr5w6whwk7a3gfid68h5hj8x60p04wx"; depends=[flare pracma Rcpp RcppArmadillo Rdpack]; }; SI = derive2 { name="SI"; version="0.2.0"; sha256="0i6kpaw5yk39skm77nf56ai25clkparz3l8qx0223jrmdqbf97b7"; depends=[]; }; - SIAmodules = derive2 { name="SIAmodules"; version="0.1.0"; sha256="1jd72pvkqsciql76crikn3r6nrxgwz8yxlsnla51i1hx5qb8ix73"; depends=[cli difNLR dplyr DT forcats ggplot2 glue lme4 magrittr mirt mirtCAT plotly purrr rlang scales shiny ShinyItemAnalysis shinyjs stringr tibble tidyr yaml]; }; + SIAmodules = derive2 { name="SIAmodules"; version="0.1.1"; sha256="1x6a1apscxdrqlh0dnz9slrfiz4vhxx32rp32lfg27sc1awlx6xy"; depends=[cli difNLR dplyr DT forcats ggplot2 glue lme4 magrittr mirt mirtCAT plotly purrr rlang scales shiny ShinyItemAnalysis shinyjs stringr tibble tidyr yaml]; }; + SIAtools = derive2 { name="SIAtools"; version="0.1.0"; sha256="07vl7c0fkpxyk970h35prxks1prd6827bvglq2iqy0micmr6g7qr"; depends=[cli desc fs magrittr purrr rlang shiny usethis yaml]; }; SIBER = derive2 { name="SIBER"; version="2.1.9"; sha256="00sr2h0fry102z2jdzsf20jav04gfskdcznzfpkjr4y5h4vv62cb"; depends=[dplyr ggplot2 hdrcde magrittr mnormt purrr rjags spatstat_geom spatstat_utils tidyr]; }; SIBERG = derive2 { name="SIBERG"; version="2.0.3"; sha256="1d8kx5m86qil50d8fhwn7lwaigdnppzk0cwyh4hv54lwffpclnki"; depends=[mclust]; }; SID = derive2 { name="SID"; version="1.1"; sha256="0wqbv9mlrcf0kjdd8n43vf7fjlhp2nialaaid5dfjsxnlzbf1sl6"; depends=[igraph Matrix pcalg RBGL]; }; SIDES = derive2 { name="SIDES"; version="1.18"; sha256="12a87kdbdhqqjjs0k99c1fv0mxi0gjhvq71rm9wvx3wkf0s5p5sv"; depends=[doParallel foreach MASS memoise multicool nnet survival]; }; SIGN = derive2 { name="SIGN"; version="0.1.0"; sha256="1ak4zv5a50iknrxpfw1iffn8gv8mc0rz2gk96nzky9zx6li5drhk"; depends=[GSVA survcomp survival]; }; - SIHR = derive2 { name="SIHR"; version="2.0.1"; sha256="1pn59ydm4rr8jkqkrfrrip92pic8710qaazc3ccw6pvhvw20n46a"; depends=[CVXR glmnet]; }; + SIHR = derive2 { name="SIHR"; version="2.1.0"; sha256="03i78kpp5gnq9v4b8rq6v0ndlsjfj2rr1m9gnl10v7z8j021qw1q"; depends=[CVXR glmnet]; }; SILGGM = derive2 { name="SILGGM"; version="1.0.0"; sha256="1lhmisgg2zbfksl7czz0fqag3732gkjc44n615ipxbdi2pvnc7m0"; depends=[glasso MASS Rcpp reshape]; }; SILM = derive2 { name="SILM"; version="1.0.0"; sha256="1iaivpdx18djfm5dqak0q9kfl1xfrnx3gk5x9a4y53h1d7jhl9p6"; depends=[glmnet hdi scalreg SIS]; }; SIMEXBoost = derive2 { name="SIMEXBoost"; version="0.2.0"; sha256="1w7r4rw4zbfk3ks3iinsvv0fcmc15xlq8ybb6bhfafki298kingi"; depends=[MASS]; }; @@ -5064,7 +5156,7 @@ in with self; { SIMPLE_REGRESSION = derive2 { name="SIMPLE.REGRESSION"; version="0.1.6"; sha256="06kqmvj8pbfgnlib0d6dzg1bh41l6jgwx6b02lgvc6z3nqnpm08w"; depends=[nlme]; }; SIMle = derive2 { name="SIMle"; version="0.1.0"; sha256="1lwi9dxv93f6fnc3j0lkl7kvf806z5f5s8flxzm2km3j5fl0bp2j"; depends=[ggplot2 Matrix plotly RCurl Sie2nts stringr]; }; SIMplyBee = derive2 { name="SIMplyBee"; version="0.3.0"; sha256="0013sdgyq29w9yah1yafkd0vj9sgw5lkhi5g5fcb59w386nlfhm5"; depends=[AlphaSimR extraDistr R6]; }; - SINRELEF_LD = derive2 { name="SINRELEF.LD"; version="1.0.3"; sha256="11pjn5b4s4sv18313zvlpszlr6503p0aysrl6lv28s1342ymgz4l"; depends=[]; }; + SINRELEF_LD = derive2 { name="SINRELEF.LD"; version="1.1.0"; sha256="15y8a56y3kjjxri1jjzb7wxpbs25bcxjnrzpabgj8rbrp3a4ghsq"; depends=[shiny shinycssloaders shinyjs]; }; SIPDIBGE = derive2 { name="SIPDIBGE"; version="0.2.1"; sha256="1scrr08fpyv2qk8yqccwbvzslxp0cjv3939kkcs3v577l6ywb414"; depends=[cli COVIDIBGE PNADcIBGE PNDSIBGE png PNSIBGE purrr rstudioapi tibble]; }; SIPETool = derive2 { name="SIPETool"; version="0.1.0"; sha256="1w5sidiajrckps358xr526jfb4d0845p595qhr5i9b9q506n0klk"; depends=[Convolutioner]; }; SIPmg = derive2 { name="SIPmg"; version="1.4.1"; sha256="1f3jirfnxxbrkala5kk0hkkm8gn2zciva6xy459vc80y058hr7z1"; depends=[data_table DESeq2 dplyr ggplot2 ggpubr HTSSIP lazyeval magrittr MASS phyloseq plyr purrr rlang stringr tibble tidyr]; }; @@ -5089,6 +5181,7 @@ in with self; { SLModels = derive2 { name="SLModels"; version="0.1.2"; sha256="1c9r4kd2kfh2cn82kngzcqhdmxc4i7djp436s116gy9xs2gd2042"; depends=[ROCR]; }; SLOPE = derive2 { name="SLOPE"; version="0.5.0"; sha256="0v176w2zj32j8988xf0d7myfcr0ahh49gckfav4v73z6ilfmbchy"; depends=[checkmate foreach ggplot2 glmnet Matrix mice Rcpp RcppArmadillo]; }; SLPresElection = derive2 { name="SLPresElection"; version="1.0.0"; sha256="1i813q0m9h964nd61kwnvakci3n1bn06pvq9zvxb2clcch05qyfj"; depends=[]; }; + SLSEdesign = derive2 { name="SLSEdesign"; version="0.0.3"; sha256="09ng145z98xh92fddi76g7grwg77y08zyqa8z1hy4lx1z0x5i5g7"; depends=[CVXR]; }; SLTCA = derive2 { name="SLTCA"; version="0.1.0"; sha256="0pq87fbi79srgjblv40yyj3w1dzf115kfidp8gi564l8xf0qilqg"; depends=[geepack Matrix mvtnorm VGAM]; }; SMARTbayesR = derive2 { name="SMARTbayesR"; version="2.0.0"; sha256="15s6vzxgbskjvgd91q0vb9qxmmsj391bjbw7s51j879cfqd16xg2"; depends=[LaplacesDemon]; }; SMARTp = derive2 { name="SMARTp"; version="0.1.1"; sha256="0gkhl9j4l67brfmln28m4q4hfi271jlg5aijnjwahlj8nsi6384y"; depends=[covr mvtnorm sn]; }; @@ -5102,9 +5195,9 @@ in with self; { SMM = derive2 { name="SMM"; version="1.0.2"; sha256="1g1c7ssdcnzgv6b221ya1xrypg2ksahc7qj1042j8nlx5wg29cld"; depends=[DiscreteWeibull seqinr]; }; SMMA = derive2 { name="SMMA"; version="1.0.3"; sha256="1nwxp447m1igm7dlxw5kqw472f8470svwx9awjp2d84m66wplinr"; depends=[Rcpp RcppArmadillo]; }; SMME = derive2 { name="SMME"; version="1.1.1"; sha256="12z02njv81d86275dv1l2f93y1i4cnq9lxk0yyaacgj3bnpdcm7h"; depends=[Rcpp RcppArmadillo]; }; - SMMT = derive2 { name="SMMT"; version="1.1.0"; sha256="1zjvdjz75qhfdm4maiq2rw9bzqa2xls15vpr3556iba5aq4hysv7"; depends=[curl dplyr rvest tibble XML xml2]; }; + SMMT = derive2 { name="SMMT"; version="1.2.0"; sha256="02mm2f4cg8dbzdmpmdv8pf2jskk5kv0w99qzdjri00zwrcd6ckm9"; depends=[curl dplyr rvest tibble XML xml2]; }; SMNCensReg = derive2 { name="SMNCensReg"; version="3.1"; sha256="10nik348b6vcmwhj5scjvkjwi86fih3bqkgpv7qxxa8jx45ds52n"; depends=[Matrix PerformanceAnalytics]; }; - SMOTEWB = derive2 { name="SMOTEWB"; version="1.1.3"; sha256="196arp5gfz066qw5n7q2w6hgx3p9q52hs7a9qva69yrm5qlrmr66"; depends=[FNN RANN Rfast rpart]; }; + SMOTEWB = derive2 { name="SMOTEWB"; version="1.2.0"; sha256="1vkkzp8vcr1pf010871wl5c6d9knryx2lvqcxn6nfy42ffbr5yx9"; depends=[FNN RANN Rfast rpart]; }; SMPracticals = derive2 { name="SMPracticals"; version="1.4-3.1"; sha256="1xplp7ihy9ish7fqhc27bhvij9lk9w9mrs7lpdca38ppi4iiafi2"; depends=[ellipse MASS nlme survival]; }; SMR = derive2 { name="SMR"; version="2.1.0"; sha256="0gg3al3qpcvw3k5zm4j36kbd2ar7pqgxxx0jngcg76j1sjhz9g9m"; depends=[Rcpp]; }; SMUT = derive2 { name="SMUT"; version="1.1"; sha256="029ishj3jfq957bbkb2xw4jj0qpm4dasb8vpdik43pvd670mgq5s"; depends=[MASS Rcpp RcppEigen SKAT]; }; @@ -5117,8 +5210,8 @@ in with self; { SNPknock = derive2 { name="SNPknock"; version="0.8.2"; sha256="121pdgvdffj61hw8x8m76na0cg5iw5gb586q05ikw5d959mmbzrs"; depends=[Rcpp RcppArmadillo RcppProgress Rdpack]; }; SNSFdatasets = derive2 { name="SNSFdatasets"; version="0.1.1"; sha256="1jam5j2s9imfrfdc3w80v4j0gnb09jkpq41lhrz636xw1wm2cids"; depends=[]; }; SNSchart = derive2 { name="SNSchart"; version="1.4.0"; sha256="18rpg2zkqa6bxnbq3s0hlsg4wizz6iw3vckf5z66q3awxqycabg9"; depends=[MASS]; }; - SNSeg = derive2 { name="SNSeg"; version="1.0.2"; sha256="17fr4jl0cwbiyb1f4695c4vs0vfaslaxfpsksa24hfb5x5z0mcap"; depends=[evd mvtnorm Rcpp truncnorm]; }; - SNSequate = derive2 { name="SNSequate"; version="1.3-4"; sha256="122x0l6lkih99n9ay3mj76ssk5h2cqh477xpizqvp3b6nkj8wkf3"; depends=[emdbook knitr magic plyr progress statmod]; }; + SNSeg = derive2 { name="SNSeg"; version="1.0.3"; sha256="0p2a8ilxg17a2idnbiaqlmlpbafadl8w1np4bxzbgkkjs0s0qijc"; depends=[mvtnorm Rcpp]; }; + SNSequate = derive2 { name="SNSequate"; version="1.3-5"; sha256="0k0g55jvm0ig6sgwkvsc63idf3vnbcw49a00l2f9rp8bqhglr0ip"; depends=[Ake emdbook equate knitr magic moments plyr progress statmod]; }; SNVLFDR = derive2 { name="SNVLFDR"; version="1.0.1"; sha256="1nl414b1x5inp3bld5aipygz3d36x4z0jg3jirwyq9mdl9w3qbvw"; depends=[]; }; SOAR = derive2 { name="SOAR"; version="0.99-11"; sha256="1n38gx5sxpkqfkk4y6vpp6g19b8bs5bisni9wn6311s0csizp86m"; depends=[]; }; SOAs = derive2 { name="SOAs"; version="1.4"; sha256="1a3gwqyhw9fzb06xmyapxw0xyff1arb4sfsg3id7blkgxsmahd75"; depends=[combinat conf_design DoE_base FrF2 igraph lhs partitions sfsmisc]; }; @@ -5152,13 +5245,12 @@ in with self; { SPINA = derive2 { name="SPINA"; version="4.1.0"; sha256="0x7y150iq072qqci2niqk7j8pvhcylb7kdvwambg1r1gi3ffycm9"; depends=[]; }; SPLICE = derive2 { name="SPLICE"; version="1.1.2"; sha256="1vzacbgb2z6b7cbcn6l5zjminl8gr5irzva0l8shq7g8cqggrvwm"; depends=[lifecycle SynthETIC zoo]; }; SPORTSCausal = derive2 { name="SPORTSCausal"; version="1.0"; sha256="1ww1wi3kflwj1f5slfv0mfi7gbaj7y8rk1m3n15szpxb9zm8grks"; depends=[CausalImpact keras]; }; - SPOT = derive2 { name="SPOT"; version="2.11.14"; sha256="15hgf0mx48z7yxb1zrhilc0lradcxak7wrbibq1r8yhxdf736zlr"; depends=[DEoptim ggplot2 glmnet laGP MASS nloptr plgp plotly randomForest ranger rgenoud rpart rsm]; }; - SPOTMisc = derive2 { name="SPOTMisc"; version="1.19.52"; sha256="0l3css9hw75r76g2iykf2iih8lqnpzqqv2l734zix3agjr5cmmlh"; depends=[callr dplyr GGally ggplot2 keras magrittr Metrics mlr plotly RColorBrewer reticulate rlang rpart_plot rsample sensitivity smoof SPOT tensorflow tfdatasets]; }; SPOUSE = derive2 { name="SPOUSE"; version="0.1.0"; sha256="10p3x3862dss779jfxw1kxhs3g94zpjpvnlww1gsw1c5hxzvmqb5"; depends=[]; }; SPPcomb = derive2 { name="SPPcomb"; version="0.1"; sha256="1kn3pi3c7g7waill1grm382ixbvnc7z8pbgzqd94hxqzgkivhid7"; depends=[nleqslv]; }; SPREDA = derive2 { name="SPREDA"; version="1.1"; sha256="0fn4p5apjq8zgd3zms2b88ga5wbsv86y59ac5x06w75rf071xglv"; depends=[nlme survival]; }; SPSL = derive2 { name="SPSL"; version="0.1-9"; sha256="0kf6mmbvavid3dw2l4fkclk669wi13wkyykhwn5272d6qnhlhhca"; depends=[]; }; SPSP = derive2 { name="SPSP"; version="0.2.0"; sha256="0gf5cw2fnssl198ccpvnma4bcqi33whl6ihc1s9i2lw6xg4qvb33"; depends=[glmnet lars Matrix ncvreg Rcpp]; }; + SPUTNIK = derive2 { name="SPUTNIK"; version="1.4.2"; sha256="1jp1gprib1ppwnsgr7457b48ljlb70s2rzccq660d5lrngs8afca"; depends=[doSNOW e1071 edgeR foreach ggplot2 imager infotheo irlba reshape spatstat_explore spatstat_geom viridis]; }; SPYvsSPY = derive2 { name="SPYvsSPY"; version="0.1.1"; sha256="1hxc73wwrzqh1r1xr9yd4hy4ma24virg4iv978lfyc9f9n56znp5"; depends=[]; }; SPlit = derive2 { name="SPlit"; version="1.2"; sha256="0n9458sj5sw4k9qd11gvmqmjf9hy1hh0bwx1jzm6r901l1wbp7xi"; depends=[Rcpp RcppArmadillo]; }; SPmlficmcm = derive2 { name="SPmlficmcm"; version="1.4"; sha256="1acs3560a7h6xx286m40abr9b7i5qihn6wni8flj0biahmsszzx6"; depends=[nleqslv]; }; @@ -5174,7 +5266,7 @@ in with self; { SRS = derive2 { name="SRS"; version="0.2.3"; sha256="0nx1sj91xkwplcmflq9c21zndaa4m21m9iqax86v947k070q48ql"; depends=[DT shiny shinybusy shinycssloaders vegan]; }; SRTsim = derive2 { name="SRTsim"; version="0.99.6"; sha256="1436lhpjbciln8xmr9sd7d0akh5kap8a9f0az7209c1zqc46i576"; depends=[concaveman dashboardthemes dplyr FNN ggplot2 ggpubr magrittr MASS Matrix matrixStats Morpho pdist plotly S4Vectors sf shiny shinyBS shinydashboard sp spatstat_geom spatstat_random viridis]; }; SRTtools = derive2 { name="SRTtools"; version="1.2.0"; sha256="1203i6nqclx0faxyvhdaapmfxy8h95jj83svxriqh1hpava5s1dy"; depends=[magrittr]; }; - SSBtools = derive2 { name="SSBtools"; version="1.5.0"; sha256="1lsba4xilk9jdhbqp386kyg0y7p7vn97zb1v077aikkzs94qbyph"; depends=[MASS Matrix stringr]; }; + SSBtools = derive2 { name="SSBtools"; version="1.5.2"; sha256="1rkmnlgs3car1allc7cr8sq2skgq3bpa274a797rmq8zjkqky16q"; depends=[MASS Matrix stringr]; }; SSDM = derive2 { name="SSDM"; version="0.2.9"; sha256="03w1rkzpkhhz251pcy57fmyq0jdf4cplv3ns0h7j76fs2v9pfn3x"; depends=[dismo doParallel e1071 earth foreach gbm ggplot2 iterators itertools leaflet magrittr mgcv nnet poibin randomForest raster reshape2 rpart scales sdm sf shiny shinydashboard spThin]; }; SSDforR = derive2 { name="SSDforR"; version="1.5.34"; sha256="12lrvh9231cix5lkc53cf4fk11sfa89011kj2qddk3lkmcyvcwfz"; depends=[Kendall MAd MASS metafor modifiedmk psych SingleCaseES TTR]; }; SSEparser = derive2 { name="SSEparser"; version="0.1.0"; sha256="1qjvrs8cv2m4g2rjcdylwss641z4cchzsdymn0lmmdpfcnfys1vy"; depends=[magrittr purrr R6 rlang stringr]; }; @@ -5214,14 +5306,14 @@ in with self; { STV = derive2 { name="STV"; version="1.0.2"; sha256="02cd78z2k08gg5kskw1m53dc2xyl9f8qhcnhvy9n90ckakw6h19h"; depends=[]; }; STraTUS = derive2 { name="STraTUS"; version="1.1.2"; sha256="0n3i7gbycp1f10058h9xlh3yk21w2izdb3xgs793mmh1i1sjy394"; depends=[ape ggplot2 ggtree gmp igraph phangorn RcppAlgos]; }; SUMMER = derive2 { name="SUMMER"; version="1.4.0"; sha256="0x93mppdaah7sznzk1rrw76ia07fnjmb676q1rrya6bzkv5fbf5z"; depends=[data_table fields ggplot2 ggridges haven Matrix RColorBrewer reshape2 scales sf shadowtext sp spdep survey survival terra viridis]; }; - SUNGEO = derive2 { name="SUNGEO"; version="1.2.1"; sha256="19r6xw1mxyx8n0sv6kxwvr7rp7ahyzziwizgm2la9h0j5dyk58jw"; depends=[automap cartogram data_table dplyr httr jsonlite measurements packcircles purrr RANN raster Rcpp RCurl rlang rmapshaper sf spdep stringr terra]; }; + SUNGEO = derive2 { name="SUNGEO"; version="1.3.0"; sha256="0ydwsrgqknngx7567xwfhwj1jdmi4ip1jxkb5jdy41f7ysy1myd0"; depends=[automap cartogram data_table dplyr httr jsonlite measurements packcircles purrr RANN raster Rcpp RCurl rlang rmapshaper sf spdep stringr terra]; }; SUSY = derive2 { name="SUSY"; version="0.1.0"; sha256="0l0mxvas80d9n3vv9bqxw2dk8q1ikwg616hraprcs70aabh7717w"; depends=[]; }; SVDNF = derive2 { name="SVDNF"; version="0.1.8"; sha256="1dps1qjr3a9wwzmi6vdr515lhvqligjhm7qdh7frii1y9lc4hzc2"; depends=[Rcpp]; }; SVN = derive2 { name="SVN"; version="1.0.1"; sha256="0n93lqb1f2s2qvzc8lrcqmr0fhd57xqbi0ymrqqmll31ns679m92"; depends=[data_table igraph memoise]; }; SWIM = derive2 { name="SWIM"; version="1.0.0"; sha256="1pfrwxn4rha7a68b82lq18x6acyhjy9d8nn2hdwd9hhf576vkvhg"; depends=[ggplot2 Hmisc nleqslv plyr Rdpack reshape2]; }; SWMPr = derive2 { name="SWMPr"; version="2.5.0"; sha256="1p7gzyzdm3fiam76dwl2sb3drphifakx2mj5jz1v3gp57xyhihiz"; depends=[data_table dplyr ggplot2 gridExtra httr lattice oce openair RColorBrewer reshape2 suncalc tictoc tidyr XML zoo]; }; SWMPrExtension = derive2 { name="SWMPrExtension"; version="2.2.5.1"; sha256="107v5fh3h03dk9ma67hj8988hfmswrl9lfijhjv5b4ww73n2v6x7"; depends=[broom curl dplyr EnvStats flextable ggimage ggplot2 ggthemes lubridate magrittr officer purrr RColorBrewer rlang scales sf SWMPr tidyr tidyselect]; }; - SWTools = derive2 { name="SWTools"; version="1.0.1"; sha256="10hj8y19s7bi4grchn574z26f42pi7mdls75bzmy8n81phk6482d"; depends=[dplyr forcats ggmap ggplot2 httr hydroTSM jsonlite lubridate magrittr readr reshape2 rlang rmarkdown segmented sf sp stringr tibble tidyr zoo]; }; + SWTools = derive2 { name="SWTools"; version="1.0.3"; sha256="134kmw30xxw90wnzb3z6s6j21vjrxfp2q0alvy2abpmgl6wmhlvp"; depends=[dplyr forcats ggplot2 ggspatial httr hydroTSM jsonlite lubridate magrittr prettymapr readr reshape2 rlang rmarkdown segmented sf stringr tibble tidyr zoo]; }; SYNCSA = derive2 { name="SYNCSA"; version="1.3.4"; sha256="0n9za302x638s666xs86zy94qch9wn0rln8xy6x9jymhhq9zn0kj"; depends=[FD permute RcppArmadillo vegan]; }; SafeVote = derive2 { name="SafeVote"; version="1.0.0"; sha256="1shv5l0grx3bsb0md5ann5dyh18w9i4q2nsar0qmd6cgl87ml4qn"; depends=[data_table dplyr fields forcats formattable ggplot2 knitr stringr]; }; SailoR = derive2 { name="SailoR"; version="1.2"; sha256="04qrnps40845ypapf37jg1c1g05nii6iwk4fv1x5xyca963hl5ii"; depends=[]; }; @@ -5236,7 +5328,7 @@ in with self; { ScaleSpikeSlab = derive2 { name="ScaleSpikeSlab"; version="1.0"; sha256="11n3pi15x77by0ikiawhnvlky6hp6qzwmsmp4l2hjng1469y7gg6"; depends=[Rcpp RcppEigen TruncatedNormal]; }; Scalelink = derive2 { name="Scalelink"; version="1.0"; sha256="0likfjw5999zd0kv1ykby78bl0x3xgh0v1yjssk7fnw1ghkxgdib"; depends=[Rcpp RcppParallel]; }; ScatterDensity = derive2 { name="ScatterDensity"; version="0.0.4"; sha256="126jvjgfja6vyjadl3a7ahpb8z99hazijai4ymvnr1g1wcnx1z19"; depends=[pracma Rcpp RcppArmadillo]; }; - SchoolDataIT = derive2 { name="SchoolDataIT"; version="0.1.0"; sha256="1zizhpy74dyka8fzvwdi9iqbkwrpjmqad5jwszhgp0lpywpcyn9k"; depends=[curl dplyr ggplot2 httr leafpop magrittr mapview readr readxl rlang rvest sf stringr tidyr xml2]; }; + SchoolDataIT = derive2 { name="SchoolDataIT"; version="0.1.2"; sha256="1mhjlll6vplg7alnrl359bb5gvf5b54f2pf4lpazsv29hqiavhqg"; depends=[curl dplyr ggplot2 httr leafpop magrittr mapview readr readxl rlang rvest sf stringr tidyr xml2]; }; SciViews = derive2 { name="SciViews"; version="0.9-13.1"; sha256="0wm4vnjh65jxyg82m8l08kanl414qiaz0cc6srshb8sdx2sixkfi"; depends=[ellipse]; }; ScoreEB = derive2 { name="ScoreEB"; version="0.1.1"; sha256="0lvdywkw2g0xdgf7zj39h1903rd0jg2lzgqq7cfni11pniv6265n"; depends=[data_table]; }; ScorePlus = derive2 { name="ScorePlus"; version="0.1"; sha256="07hmrx1k256i4cs605j5bpg6brzypryxlcnjkzqak8cw4f26k24q"; depends=[combinat igraph igraphdata limSolve RSpectra]; }; @@ -5246,17 +5338,19 @@ in with self; { ScreenClean = derive2 { name="ScreenClean"; version="1.0.1"; sha256="0haanr05g4vwp5apncyzv8i3r61g4xf9ihm8ilcabcgpri56gpjk"; depends=[MASS Matrix quadprog]; }; ScriptMapR = derive2 { name="ScriptMapR"; version="0.0.3"; sha256="18pd23yqn3ai1yfl149081n42hbh0d57hm71s2lhm1z7a5ccjkmf"; depends=[dplyr formatR RCy3 stringr]; }; SeBR = derive2 { name="SeBR"; version="1.0.0"; sha256="0xk002y4nim5f3mcfbl3zk484cf2s5mvg1paj2jg4f5v60vr4pwp"; depends=[fields GpGp MASS quantreg spikeSlabGAM statmod]; }; - SeaVal = derive2 { name="SeaVal"; version="1.1.1"; sha256="1ghkq6vqnzzw711s309s5802hrc6q5vxa8ijlp46s579r61ifa3v"; depends=[data_table ggplot2 ggplotify lifecycle maps ncdf4 patchwork RColorBrewer scales]; }; + SeaVal = derive2 { name="SeaVal"; version="1.2.0"; sha256="1j4y96pqh6h791hiz07f6c4bhacm8n5v720bkwpkmbkky39yi2bf"; depends=[data_table ggnewscale ggplot2 ggplotify lifecycle maps ncdf4 patchwork RColorBrewer scales stringr]; }; SearchTrees = derive2 { name="SearchTrees"; version="0.5.5"; sha256="1n0y91y1l657g61klbcjz82ddj2csdpnralc3rbk1hbwr4nxk069"; depends=[]; }; SecDim = derive2 { name="SecDim"; version="3.2"; sha256="04l4qpw409dj5i494vmf7vmksis6910599gh259nbyv0pdfw5svr"; depends=[geosphere RcppArmadillo]; }; SeedCalc = derive2 { name="SeedCalc"; version="1.0.0"; sha256="1p8ncf3l2zhpbbblpjagg8cg9gf7f2izdcgc48n1aq4f7bmjbqgk"; depends=[]; }; + SeedImbibition = derive2 { name="SeedImbibition"; version="0.1.0"; sha256="05gxixj69nqvb9d4v81d7359nl3dihglxqysr1ys6qz3vzjr8zq4"; depends=[]; }; SeedMatchR = derive2 { name="SeedMatchR"; version="1.1.1"; sha256="138chb0z1gyhvl56g3a7zf4nash1v3v5l3qfxiqai2kxvladmz9y"; depends=[AnnotationHub Biostrings cowplot dplyr GenomeInfoDb GenomicFeatures ggmsa ggplot2 lifecycle msa stringr testit]; }; + SeedVigorIndex = derive2 { name="SeedVigorIndex"; version="0.1.0"; sha256="00r7n7h3b81pnq0bbgm6pgbz7w3algk1apawmc15apg9zi85x8dp"; depends=[]; }; SegCorr = derive2 { name="SegCorr"; version="1.2"; sha256="1g4bwfs539jf7ckzjyindi3v1av7vd38yz16m7cb20qqa0a33kbj"; depends=[jointseg]; }; Sejong = derive2 { name="Sejong"; version="0.01"; sha256="0j10szvdn32b7xnvhcbj89xma64bq62936b3r18n1limjpismfws"; depends=[]; }; SeleMix = derive2 { name="SeleMix"; version="1.0.2"; sha256="03q5pdgxdfx944zwpl2w7gzf23va4flbd8in3g03980smq0ai2c1"; depends=[mvtnorm]; }; Select = derive2 { name="Select"; version="1.4"; sha256="1qx4wwxxwjq31vf645xvwb0y2z5h4v6ca8fcrfpaj5kc33f333v2"; depends=[ade4 FD lattice latticeExtra Rsolnp]; }; SelectBoost = derive2 { name="SelectBoost"; version="2.2.2"; sha256="189hdr50sikg6pr9x9amjmgg9z0c95j65bddmifsy7zvjhllzjiy"; depends=[abind Cascade glmnet igraph lars msgps Rfast spls varbvs]; }; - SelectionBias = derive2 { name="SelectionBias"; version="1.0.0"; sha256="1lqpa5yyxipnx31r0gmja59dk85gmpg9j1rzpc9vh0lq3l87878b"; depends=[arm]; }; + SelectionBias = derive2 { name="SelectionBias"; version="2.0.0"; sha256="00fk3ljm3x1slffni6g4j61s2766znlmamg16vmbkfjmrbb80nfy"; depends=[arm lifecycle]; }; SemNeT = derive2 { name="SemNeT"; version="1.4.4"; sha256="0240r7vsr39s53756gmg3s70cv0qaipxaw6b2bgr8fipf11dw15m"; depends=[broom car dplyr effects ggplot2 igraph magrittr pbapply philentropy plyr qgraph scales]; }; SemNetCleaner = derive2 { name="SemNetCleaner"; version="1.3.4"; sha256="1fll6i4bz2z07h23z5m3x8hqw5rkianh0w6v8gnnkjqlrnacpfp9"; depends=[easycsv editData foreign miniUI R_matlab readxl rstudioapi searcher SemNetDictionaries shiny stringdist stringi]; }; SemNetDictionaries = derive2 { name="SemNetDictionaries"; version="0.2.0"; sha256="1yhhva79hhj1imzw0n8wkyrb6pmxcqs7kq9czs392xzc6lqk9xr2"; depends=[easycsv knitr]; }; @@ -5265,7 +5359,7 @@ in with self; { SemiEstimate = derive2 { name="SemiEstimate"; version="1.1.3"; sha256="0zqxy50glx3xkzz6z41nifqxjgva5fk2x6fbbhdm39fham2yb34f"; depends=[]; }; SemiMarkov = derive2 { name="SemiMarkov"; version="1.4.6"; sha256="0nga790kcrvmbrx5asp4062711x0kjsccc246l4syiiw30b769ig"; depends=[MASS numDeriv Rsolnp]; }; SemiPar = derive2 { name="SemiPar"; version="1.0-4.2"; sha256="0pa3drpvclkw81ji5m1h5arj5c2rh03dnlff97cnnr1v5kvg1i4w"; depends=[cluster MASS nlme]; }; - SemiPar_depCens = derive2 { name="SemiPar.depCens"; version="0.1.1"; sha256="08z73bw7qjns16zci0m0wq2i4f60v7xmcrsa9iy692xpijqp30lh"; depends=[copula doParallel foreach pbivnorm survival]; }; + SemiPar_depCens = derive2 { name="SemiPar.depCens"; version="0.1.2"; sha256="1dkyq8gilcxy4rml917851f7yn252g8xf6rr0glvai1jz5iyi8js"; depends=[copula doParallel foreach pbivnorm survival]; }; SenSpe = derive2 { name="SenSpe"; version="1.3"; sha256="0mmf2pyh0nbf7jpb49bplh9gh3ijx0dybzsjdrprqz3gicm6qlly"; depends=[]; }; SenSrivastava = derive2 { name="SenSrivastava"; version="2015.6.25.1"; sha256="101qq84pii8m9naw0nnaqnbqbzjpfvvc2dql4a8hbihjhvyxbjxa"; depends=[]; }; SenTinMixt = derive2 { name="SenTinMixt"; version="1.0.0"; sha256="1yja63087nhb5c0wlql7yynjkhkrjw69amvz4w55xqvp605rh46f"; depends=[data_table doSNOW expint foreach mclust rlist snow tidyr TSdist withr zipfR]; }; @@ -5287,8 +5381,9 @@ in with self; { SequentialDesign = derive2 { name="SequentialDesign"; version="1.0"; sha256="1gi37pixwbpy7358id1c75rckr352hs8vjs8sk8qgsr97pkm5xdq"; depends=[Sequential]; }; SetMethods = derive2 { name="SetMethods"; version="4.0"; sha256="0pzxcqbc7jnsxhv902qw2q9rcqskib11z36d5nav9wny6bj2z658"; depends=[admisc betareg fmsb ggplot2 ggrepel QCA scatterplot3d stargazer]; }; SetTest = derive2 { name="SetTest"; version="0.2.0"; sha256="08wc6cbnannmwkncqhpcw6l0y7c1v7z3awk5j7fd853nszfmpbk0"; depends=[]; }; - Seurat = derive2 { name="Seurat"; version="5.0.3"; sha256="08r5l6sk8i134izd29ydfm7hva7a9b3lfglmgngc9w73qs9dzwz4"; depends=[cluster cowplot fastDummies fitdistrplus future future_apply generics ggplot2 ggrepel ggridges httr ica igraph irlba jsonlite KernSmooth leiden lifecycle lmtest MASS Matrix matrixStats miniUI patchwork pbapply plotly png progressr purrr RANN RColorBrewer Rcpp RcppAnnoy RcppEigen RcppHNSW RcppProgress reticulate rlang ROCR RSpectra Rtsne scales scattermore sctransform SeuratObject shiny spatstat_explore spatstat_geom tibble uwot]; }; - SeuratObject = derive2 { name="SeuratObject"; version="5.0.1"; sha256="0hgrymldcqja40prr23gwx1c7lvwjjwcla3dld6x8wzkzqh1gkjs"; depends=[future future_apply generics lifecycle Matrix progressr Rcpp RcppEigen rlang sp spam]; }; + Seurat = derive2 { name="Seurat"; version="5.1.0"; sha256="0nad49g13v5zg4rr2099m1cl1qcmmj1a0m09gam5xiccg8yv9kxd"; depends=[cluster cowplot fastDummies fitdistrplus future future_apply generics ggplot2 ggrepel ggridges httr ica igraph irlba jsonlite KernSmooth leiden lifecycle lmtest MASS Matrix matrixStats miniUI patchwork pbapply plotly png progressr purrr RANN RColorBrewer Rcpp RcppAnnoy RcppEigen RcppHNSW RcppProgress reticulate rlang ROCR RSpectra Rtsne scales scattermore sctransform SeuratObject shiny spatstat_explore spatstat_geom tibble uwot]; }; + SeuratObject = derive2 { name="SeuratObject"; version="5.0.2"; sha256="1kx0icqzjck7vynxj5962sz9zlassia4j32azr9y7ds5yhhhvlyy"; depends=[future future_apply generics lifecycle Matrix progressr Rcpp RcppEigen rlang sp spam]; }; + ShapDoE = derive2 { name="ShapDoE"; version="1.0.0"; sha256="1lv0kci2yxlyswfmc0wm3iqzw1mgsjhmwilm5mbf7d2l643rhwf1"; depends=[gtools]; }; ShapeChange = derive2 { name="ShapeChange"; version="1.5"; sha256="0m9v5ykw8gfvyr9v149bs8sqjf9712yhvlg2rin6b5f1ww3mzl37"; depends=[coneproj quadprog]; }; ShapePattern = derive2 { name="ShapePattern"; version="3.0.1"; sha256="1vlzvfns6grxc2g0d4slsckg6lzzr0k38brncf2akb41jkczbyak"; depends=[igraph landscapemetrics raster sp terra]; }; ShapeRotator = derive2 { name="ShapeRotator"; version="0.1.0"; sha256="1pg2m1wh7fbchm8gp3mngfnf5g2rbhvzim1bpzqyvxqpx6ynicsa"; depends=[plot3D]; }; @@ -5297,16 +5392,16 @@ in with self; { ShapleyValue = derive2 { name="ShapleyValue"; version="0.2.0"; sha256="05ziyvvd81l0lx572in9snndnjdq8y4wkd8bxqs0y979l49yr6fd"; depends=[kableExtra MASS tidyverse]; }; SharkDemography = derive2 { name="SharkDemography"; version="1.1.0"; sha256="188qzbixz44qvi1jqr76hmmamkxn43lc9sayrpsvwi3bhkj9ablw"; depends=[doFuture doParallel dplyr foreach interp iterators magrittr MASS popbio readr tidyr]; }; SharpeR = derive2 { name="SharpeR"; version="1.3.0"; sha256="1xq2m53n2gc706lyd16gccllx2wgwdrqkfpf79jwwdmipqfqnxjx"; depends=[matrixcalc]; }; - SheetReader = derive2 { name="SheetReader"; version="1.2.0"; sha256="1da9p1y7vxkmkflighjgxd1f7sjcbq24m68igr77vqga4wd0v72d"; depends=[Rcpp]; }; + SheetReader = derive2 { name="SheetReader"; version="1.2.1"; sha256="0b9cgyh4lls8m6xq5hl2pmhlk72yl7bhbc3ssm81d84rsshhyxvl"; depends=[Rcpp]; }; ShellChron = derive2 { name="ShellChron"; version="0.4.0"; sha256="1xb06zszwirn5l63qa9g99q9by58sdqpg8s6kiq70z5qqnlgiq5c"; depends=[dplyr ggplot2 ggpubr magrittr rtop scales tidyr zoo]; }; SherlockHolmes = derive2 { name="SherlockHolmes"; version="1.0.1"; sha256="162iw7qzi5cb73lawfvsnbq3cxgx0si9bz0avv60rrkzdb0xlr05"; depends=[devtools dpseg plot_matrix plotrix qpdf stargazer stringr tableHTML textBoxPlacement zoo]; }; ShiftConvolvePoibin = derive2 { name="ShiftConvolvePoibin"; version="1.0.0"; sha256="0pj3vynm8afns2kcwvmramxgbd0s2ksyyc5iha6p4dw2nz4hahc7"; depends=[]; }; ShiftShareSE = derive2 { name="ShiftShareSE"; version="1.1.0"; sha256="1zjqr0a6gs6k6mh8a5bzq48fz143g79p2k1ngcbrd9py8pdj0ss1"; depends=[Formula]; }; - ShinyItemAnalysis = derive2 { name="ShinyItemAnalysis"; version="1.5.0"; sha256="0n1fz79gb0s5pjl3rb2cd3nbvl4nf3xbk6cjhgrdifkzh705n5yg"; depends=[difR dplyr ggplot2 lme4 magrittr mirt nnet psych purrr rlang rstudioapi tibble tidyr]; }; + ShinyItemAnalysis = derive2 { name="ShinyItemAnalysis"; version="1.5.1"; sha256="12knai3ar8c091pwba34dz74yhnx7kd0f6si0hcwamdcnvb6i324"; depends=[difR dplyr ggplot2 lme4 magrittr mirt nnet psych purrr rlang rstudioapi tibble tidyr]; }; ShinyLink = derive2 { name="ShinyLink"; version="0.2.2"; sha256="1idb95hdjllrhzm4fx1lrx3d2palbwjshm6ppjw916p7wg7y7wqn"; depends=[config DT fastLink gender ggplot2 ggvenn golem haven htmlwidgets jsonlite lubridate magrittr readxl shiny shinydashboard shinydashboardPlus shinyWidgets tidyr tidyselect vroom]; }; ShinyQuickStarter = derive2 { name="ShinyQuickStarter"; version="2.0.1"; sha256="19k46hwcab33l6dc43dp4hvvr366qh3z2jjw3b79x7f824wampnn"; depends=[colourpicker data_table dplyr fs ggplot2 miniUI plotly reshape2 shiny shinyalert shinydashboard shinyFiles shinyjs shinyWidgets stringi stringr styler]; }; ShinyTester = derive2 { name="ShinyTester"; version="0.1.0"; sha256="0wm4rl2p8ggw6v2chk9b6ygh5y8p8cwzbyra0nr0qr2ka97didp8"; depends=[dplyr purrr readr stringr tidyr visNetwork]; }; - ShortForm = derive2 { name="ShortForm"; version="0.5.3"; sha256="1nlpn7rhk94jsdbhqa58rz07pl2gcf9rfc39h3bp4gh674wczn9g"; depends=[doSNOW foreach ggplot2 ggrepel lavaan stringr tidyr]; }; + ShortForm = derive2 { name="ShortForm"; version="0.5.5"; sha256="14qypmb51w5k6xndjdgrwawyr3ccnp9llsh93sah7xkwl1hkkbdl"; depends=[doSNOW foreach ggplot2 ggrepel lavaan stringr tidyr]; }; ShrinkCovMat = derive2 { name="ShrinkCovMat"; version="1.4.0"; sha256="0iyri3syjk9xv49d87fdyhnxg5c5x827vnak8vgckkkp62sdln2q"; depends=[Rcpp RcppArmadillo]; }; SiER = derive2 { name="SiER"; version="0.1.0"; sha256="1ng6vnh30z6z1nvclsdzc9gdbrsrb2kqdqvs6fwm0j1zqlk12x0y"; depends=[]; }; SiMRiv = derive2 { name="SiMRiv"; version="1.0.6"; sha256="1xwbfwhmlmgsbrg0cfgn1yp8f29vzsga8sw7fyclsf76dx9sbmc6"; depends=[mco raster]; }; @@ -5317,7 +5412,7 @@ in with self; { SigOptR = derive2 { name="SigOptR"; version="0.0.1"; sha256="1sylchhhz6kx4r8jx95cvsmjsacjh8pin7acf2fyw2a4nlx9r1a6"; depends=[httr jsonlite]; }; SigTree = derive2 { name="SigTree"; version="1.10.6"; sha256="18gh7azjr979ijc2y4yyskj24ay697rw3j7znc5p4a63s4vpxr9w"; depends=[ape MASS phyext2 phylobase phyloseq RColorBrewer vegan]; }; SightabilityModel = derive2 { name="SightabilityModel"; version="1.5.5"; sha256="1fj871q0mav3dffm3sjg4zsci0lm8z74nfgbbrv6jzab155vfrmc"; depends=[formula_tools Matrix msm mvtnorm plyr survey]; }; - Signac = derive2 { name="Signac"; version="1.12.0"; sha256="0dy9fhila2bi7dj7l57i1xb86ng6qkb0024f78gbmhxnpi9iwkqa"; depends=[BiocGenerics data_table dplyr fastmatch future future_apply GenomeInfoDb GenomicRanges ggplot2 IRanges irlba lifecycle Matrix patchwork pbapply Rcpp RcppRoll rlang Rsamtools S4Vectors scales SeuratObject stringi tidyr tidyselect vctrs]; }; + Signac = derive2 { name="Signac"; version="1.13.0"; sha256="0ahv4j1jbhbclvidyw6h15p6n64zhawamqnrn8s1hf9pchy11d6r"; depends=[BiocGenerics data_table dplyr fastmatch future future_apply GenomeInfoDb GenomicRanges ggplot2 IRanges irlba lifecycle Matrix patchwork pbapply Rcpp RcppRoll rlang Rsamtools S4Vectors scales SeuratObject stringi tidyr tidyselect vctrs]; }; SignacX = derive2 { name="SignacX"; version="2.2.5"; sha256="0b38k3lxca985mqwvbbdczkjnn2x79kga05yw995gb6d20cjh96v"; depends=[igraph jsonlite lme4 Matrix neuralnet pbmcapply RColorBrewer RJSONIO Seurat]; }; SignifReg = derive2 { name="SignifReg"; version="4.3"; sha256="1f57zbc7746jr2hfgri29whw5nb7w8h9nwk2p2n851b1rf7q0mgp"; depends=[car]; }; SillyPutty = derive2 { name="SillyPutty"; version="0.4.1"; sha256="18qc7dwd29zghx9klsslvr2pianbf3av0pvc0wc09781hiv3xksg"; depends=[cluster oompaBase Polychrome Thresher]; }; @@ -5328,12 +5423,12 @@ in with self; { SimCop = derive2 { name="SimCop"; version="0.7.0"; sha256="1yrdy77a9h14v92c63ng8phi2ig73wy4xjjdb75322grc0bd3jq6"; depends=[quadprog]; }; SimCorMultRes = derive2 { name="SimCorMultRes"; version="1.9.0"; sha256="061gnxvhii0hhnxd00hx9cpjmamcdvh10mcwjp43s09f5j4d564y"; depends=[evd]; }; SimCorrMix = derive2 { name="SimCorrMix"; version="0.1.1"; sha256="1mx8xkg1nbh4x4xr6m672zyg00s3lky2sy5mz7dfkw40vz2bwi53"; depends=[BB ggplot2 MASS Matrix mvtnorm nleqslv SimMultiCorrData triangle VGAM]; }; - SimDesign = derive2 { name="SimDesign"; version="2.14"; sha256="0jf1a5lfm0jd6k76jxq3pp8ngx10z44h6cgv4dhi59n4f95z7a82"; depends=[beepr dplyr foreach future future_apply pbapply progressr RPushbullet sessioninfo]; }; + SimDesign = derive2 { name="SimDesign"; version="2.15.1"; sha256="045bw9zjwhpfgvcl7vfgszxlb6h6wxp83fjh79rm2spnq96vzwk2"; depends=[beepr dplyr foreach future future_apply pbapply progressr R_utils RPushbullet sessioninfo]; }; SimDissolution = derive2 { name="SimDissolution"; version="0.1.0"; sha256="1rdsxykh740h22ln635m0ysm00pdw94vp7qhgify4mcvc46c3632"; depends=[alabama dplyr mvtnorm]; }; SimEUCartelLaw = derive2 { name="SimEUCartelLaw"; version="1.0.3"; sha256="1n0dvhwqyirb6myc30ydvskb1k7hlx4nkqy15gpx87zl01vpn8fz"; depends=[plot3D]; }; - SimEngine = derive2 { name="SimEngine"; version="1.3.0"; sha256="0vijcdgm7lmwx4gq170965q4mrshpdwqffv1afmjrn1zrkxifnpi"; depends=[data_table dplyr magrittr pbapply rlang]; }; + SimEngine = derive2 { name="SimEngine"; version="1.4.0"; sha256="0rcggzaz6vjf4vrnl9ashyl2lyn0zydypaj9bjhar5bq652xrwz5"; depends=[data_table dplyr magrittr MASS pbapply rlang]; }; SimHaz = derive2 { name="SimHaz"; version="0.1"; sha256="04q4xyc1ki1zr3grm3khfg0kbykjy3j9qpg332l7pxp4j3wa3aw3"; depends=[survival]; }; - SimInf = derive2 { name="SimInf"; version="9.6.0"; sha256="1k89yml8z8ckk62lgpvb9r227vn39l9jkzzbxw34fm0ws09n77b2"; depends=[digest MASS Matrix]; }; + SimInf = derive2 { name="SimInf"; version="9.7.0"; sha256="1pkr4x3qmv1b75b2s38nck08lsj8k81rp3md4biachvw56ym74s9"; depends=[digest MASS Matrix]; }; SimJoint = derive2 { name="SimJoint"; version="0.3.12"; sha256="1vh0yj9d73mi2isw8wn2hgr7ycxadcifwzl57jgkqgnwc2vzlmsg"; depends=[Rcpp RcppArmadillo]; }; SimMultiCorrData = derive2 { name="SimMultiCorrData"; version="0.2.2"; sha256="0brszbqxf40y65xp96c5hp7hhvz3gv0xlg93r5ik8qdh0bn0y1sw"; depends=[BB GenOrd ggplot2 Matrix nleqslv psych triangle VGAM]; }; SimNPH = derive2 { name="SimNPH"; version="0.5.5"; sha256="05qp6cnih319p88vrppwvxh595a7vawkc7508xzmzhvrjbn3p7jn"; depends=[car dplyr miniPCH nph nphRCT purrr rlang SimDesign stringr survival tibble tidyr]; }; @@ -5344,11 +5439,9 @@ in with self; { SimSurvey = derive2 { name="SimSurvey"; version="0.1.6"; sha256="0as8cifaymnd9rccynyhs4pfs27z0rhz18pbl0am0xvp3y7avbs0"; depends=[data_table doParallel foreach lifecycle magrittr plotly progress rlang sf stars]; }; SimTimeVar = derive2 { name="SimTimeVar"; version="1.0.0"; sha256="1x0lkgqwx1vz1gbyvy0hx20n638n30j0dny1iz5vs0cvviq3cdv8"; depends=[car corpcor ICC metafor miscTools mvtnorm plyr psych]; }; SimVitD = derive2 { name="SimVitD"; version="1.0.3"; sha256="1wz3b73pnccqsbg8wssah4gmwv7ajmhhca313r07sppgqskmm68r"; depends=[simpleboot]; }; - SimilaR = derive2 { name="SimilaR"; version="1.0.8"; sha256="1wlxscl94r3gxwsc9yw0y4z5nj28nxilijp0pbzv4z2n4aqc7vy6"; depends=[BH Rcpp stringi]; }; SimilarityMeasures = derive2 { name="SimilarityMeasures"; version="1.4"; sha256="1w4klcln4hy9vcik9csg7b3b8kk4raxgckwfrhqg089d80xbqsxj"; depends=[]; }; Simile = derive2 { name="Simile"; version="1.3.3"; sha256="1izyjp18m1inac3svkf59z3lddrv44m7pdkhisgkr987xs8gdch4"; depends=[]; }; SimplicialCubature = derive2 { name="SimplicialCubature"; version="1.3"; sha256="06dpbawn650lzybd5j4xkygbg5s2nqfz6b4g0skm4z7lsb2d9dhb"; depends=[]; }; - SimplifyStats = derive2 { name="SimplifyStats"; version="2.0.4"; sha256="08775g6fdx09y8pkfq4k8zxbxpwah7yqq5cg30lmxl7zrpmza5hv"; depends=[assertthat broom dplyr moments tibble]; }; SimplyAgree = derive2 { name="SimplyAgree"; version="0.2.0"; sha256="10n63rn7kl4k1q7k3jz4f3macmn8y662jy41vdspgdwf0iqvf5in"; depends=[boot dplyr emmeans ggplot2 insight jmvcore lifecycle lme4 magrittr MASS Matrix nlme patchwork purrr quantreg stringr tidyr tidyselect]; }; SingleCaseES = derive2 { name="SingleCaseES"; version="0.7.2"; sha256="0yp7h13g9lq9ym8jzxlzc0m2vmp63kvnmf7ysyxinjardigng6k7"; depends=[dplyr magrittr purrr rlang tidyr tidyselect]; }; SixSigma = derive2 { name="SixSigma"; version="0.11.1"; sha256="1gb6giq9rsgsrwrk0m8r2ay4hi1kqb009rsak33wvmvqsavka8lf"; depends=[e1071 ggplot2 lattice nortest reshape2 scales testthat xtable]; }; @@ -5361,12 +5454,13 @@ in with self; { Sleuth3 = derive2 { name="Sleuth3"; version="1.0-6"; sha256="1llhf4hgyichzllzh74v63xw9zba25r0p87vfnhbhlf9q456mr6y"; depends=[]; }; SlicedLHD = derive2 { name="SlicedLHD"; version="1.0"; sha256="17jv8ky2qn15l2ppx5xfnwzf15bhwd31s4ci8r05wlyvnmqqgbfh"; depends=[]; }; SlidingWindows = derive2 { name="SlidingWindows"; version="0.2.0"; sha256="0hvxg4hrk3rb1wxhi71rgamxd8wcwys569137znfs0y8j6yvf0jj"; depends=[DCCA nonlinearTseries PerformanceAnalytics TSEntropies]; }; - SmCCNet = derive2 { name="SmCCNet"; version="2.0.2"; sha256="0kkwvvl8rqpdfn5avl5ash3svyfff1rrkmkafjslvqwpym69gsb0"; depends=[EnvStats furrr future igraph magrittr Matrix pbapply pracma pROC purrr rlist spls]; }; + SmCCNet = derive2 { name="SmCCNet"; version="2.0.3"; sha256="16kw1nk0y8v2dg4akv5biwznx6a0pv754453r3ymfxw7qjrknyqc"; depends=[EnvStats furrr future igraph magrittr Matrix pbapply pracma pROC purrr rlist spls]; }; SmallCountRounding = derive2 { name="SmallCountRounding"; version="1.0.3"; sha256="1jnhfzjd2x54h35si1wrr91dkzdzc502m07mvvb894y5pq5q823a"; depends=[Matrix SSBtools]; }; SmartEDA = derive2 { name="SmartEDA"; version="0.3.10"; sha256="05m96kp1ylbxslf9y9n063r807wz3wxf6whqmysb7bgyjpsnbzlb"; depends=[data_table GGally ggplot2 gridExtra ISLR qpdf rmarkdown sampling scales]; }; SmartMeterAnalytics = derive2 { name="SmartMeterAnalytics"; version="1.0.3"; sha256="0i8my7ngzdbay3cld8axhvbri0nh0dd1dmv2lbsgyx4adr5hb30f"; depends=[FNN futile_logger plyr stinepack zoo]; }; SmartSVA = derive2 { name="SmartSVA"; version="0.1.3"; sha256="10a8s2znsg8ywqkq9fsxiyqfsprrx33pqissazp2vmabs11mg4np"; depends=[isva Rcpp RcppEigen RSpectra sva]; }; SmarterPoland = derive2 { name="SmarterPoland"; version="1.8.1"; sha256="07nag50mzj7a4f5lprvvs6k7mppyzcwvkc3dj8b1il2k06q5ffh5"; depends=[ggplot2 htmltools httr jsonlite rjson]; }; + SmoothHazard = derive2 { name="SmoothHazard"; version="2024.04.10"; sha256="18nn6c94lr1l49z9wj5grxck72dk9rkppg0qh5qbgcdkfxww4096"; depends=[lava mvtnorm prodlim]; }; SmoothTensor = derive2 { name="SmoothTensor"; version="0.1.1"; sha256="19mbxsbp656i4qdkr2wplil542pxxb3xfznh3vv2nxi23phr01gy"; depends=[Matrix rTensor]; }; SmoothWin = derive2 { name="SmoothWin"; version="3.0.0"; sha256="0zq2sq0w4rs3hrra24wgbbzv88d1hx6m8q8gmc5h6nbs1172hs66"; depends=[nlme Rfast]; }; Snake = derive2 { name="Snake"; version="1.0"; sha256="10i1bqsva70lzavfqvc56ga70ddjfwf0hqpspj8fqwa0jw86jmbh"; depends=[]; }; @@ -5376,13 +5470,17 @@ in with self; { Sofi = derive2 { name="Sofi"; version="0.16.4.8"; sha256="0h9ir0xrwmsabfhwsr9hbpwabh1fsb3p51y8qcgm92iyvc6dl3mf"; depends=[foreign sampling shiny]; }; SoftBart = derive2 { name="SoftBart"; version="1.0.1"; sha256="0s7d2gxh6qnpwzagfrwhacgd7w3hxx3xkxrhk6kqjykpckdwy091"; depends=[caret glmnet MASS progress Rcpp RcppArmadillo scales truncnorm]; }; SoftClustering = derive2 { name="SoftClustering"; version="2.1.3"; sha256="0wnl3a0jnrhafkjj3yk0rij1ya0y4nxzix29mr5wpwgkhfyky8zy"; depends=[]; }; + SoilConservation = derive2 { name="SoilConservation"; version="1.0.0"; sha256="17jwz338h2km43fddnp21hf4ri0gb0y2jiggm1236m5wl87livxx"; depends=[]; }; + SoilFDA = derive2 { name="SoilFDA"; version="0.1.0"; sha256="1zar9affa9cndr4m97fs7zhs9gz3y95k1xi0ci4m5hjqg00aiz7z"; depends=[]; }; + SoilFunctionality = derive2 { name="SoilFunctionality"; version="0.1.0"; sha256="1r9ifr6ckbqlccrsxl5sph4s7hgkzfzyk3chiw421vvckpbdsl4s"; depends=[]; }; SoilHyP = derive2 { name="SoilHyP"; version="0.1.7"; sha256="0f4djzmbyz6x5av0d4ii972dw6295c4l3c7gbwp0yinpy3rgvh0q"; depends=[data_table lubridate]; }; SoilR = derive2 { name="SoilR"; version="1.2.107"; sha256="1j2p5rr8a62fsf77akksk8533ilcx8a7319wq4gjz680va8glp5h"; depends=[assertthat deSolve expm igraph purrr sets]; }; + SoilSaltIndex = derive2 { name="SoilSaltIndex"; version="0.1.0"; sha256="1hkdhpk257rzk74x9iwmnnj2m1yahlgidslkvwip86qh9rdjdaf9"; depends=[raster sp]; }; SoilTaxonomy = derive2 { name="SoilTaxonomy"; version="0.2.4"; sha256="19rm7gmp6ya1fq1plmajjp8w8hf5q0j0va5flvpj39i2by3w3xrc"; depends=[data_table stringr]; }; SoilTesting = derive2 { name="SoilTesting"; version="0.1.0"; sha256="0l808ic9irz7m8i3rcr65mqq5x4a3mk481c7f1ihca2rca43pm2j"; depends=[]; }; Sojourn_Data = derive2 { name="Sojourn.Data"; version="0.3.0"; sha256="1flxiga9szhifndrhmf4blgms477gnnf4gd6wkxqgv3vgisc4q4i"; depends=[]; }; SolveSAPHE = derive2 { name="SolveSAPHE"; version="2.1.0"; sha256="1r42h19l186jry2wxmrp9y1jdcwr7wx4an3nmryc4l33f48idbfr"; depends=[]; }; - SomaDataIO = derive2 { name="SomaDataIO"; version="6.0.0"; sha256="1ld0icylfj9nsdacm3dc7p4q6ysah393njcjxzj0zyp077k014nz"; depends=[cli crayon dplyr lifecycle magrittr readxl tibble tidyr usethis]; }; + SomaDataIO = derive2 { name="SomaDataIO"; version="6.1.0"; sha256="1r9hb804gjzqn0y91kyc4ays7x3pqxknsbz0b3gy2kkldkhb60c1"; depends=[cli crayon dplyr lifecycle magrittr readxl tibble tidyr usethis]; }; SongEvo = derive2 { name="SongEvo"; version="1.0.0"; sha256="0mc5wlf5axbflys6g8b7xg0di3wwkli7q0a9fby6598fq9hbaqpd"; depends=[boot geosphere lattice sp]; }; SorptionAnalysis = derive2 { name="SorptionAnalysis"; version="0.1.0"; sha256="0drns1ajcga5z56hcgjxld1riwjn7vli8k1ma1xqifpy1qwy7ci6"; depends=[]; }; SortedEffects = derive2 { name="SortedEffects"; version="1.7.0"; sha256="188qlgg3m8f07hbjim65yw3qy6200y0b54imkdqm8mq0f14nmi0f"; depends=[boot Hmisc pbapply quantreg SparseM]; }; @@ -5396,10 +5494,12 @@ in with self; { SpNMF = derive2 { name="SpNMF"; version="0.1.1"; sha256="1xybxx47i3ww5d7chwl38xc48fbsclgyxcki8h85c6dkm49dxy8i"; depends=[NMF]; }; SpPOP = derive2 { name="SpPOP"; version="0.1.0"; sha256="10s11sd8afridrkdg6q6wxqin0c214dl692sjz5f4ypv3irmwy04"; depends=[numbers qpdf]; }; SpTe2M = derive2 { name="SpTe2M"; version="1.0.3"; sha256="1xykmbgwwnvl7c9mf0aam3s55xmq2pxdy5wkkz9nzj1c74m0bxqf"; depends=[ggplot2 glmnet knitr mapproj maps MASS rmarkdown]; }; - SpaDES_core = derive2 { name="SpaDES.core"; version="2.0.3"; sha256="0lvs0jqlca4hcvn5d9f7ay4prqnk2lzddkq9gw295jm2plzk6a4l"; depends=[crayon data_table fs igraph lobstr qs quickPlot reproducible Require terra whisker]; }; - SpaDES_tools = derive2 { name="SpaDES.tools"; version="2.0.5"; sha256="0b598s3rblc3x97f7ikaf10xdy0v34h4dzv12l576ldmzpc9hjzq"; depends=[backports checkmate data_table fpCompare Rcpp reproducible terra]; }; - SpaTopic = derive2 { name="SpaTopic"; version="1.0.1"; sha256="0q4sgxbkc8i4mmlkm03khcsip6kd9gf28xm7qq900r5ahz44zkm9"; depends=[foreach iterators RANN Rcpp RcppArmadillo RcppProgress sf]; }; - SpaceTimeBSS = derive2 { name="SpaceTimeBSS"; version="0.3-0"; sha256="1mxaf1w4476j14dh9rd8z83y0vfysrzhvscmg93311dqv8iw22qw"; depends=[JADE Matrix Rcpp RcppArmadillo]; }; + SpaCOAP = derive2 { name="SpaCOAP"; version="1.2"; sha256="1cj5avfsfzlb9jbyckpb2zjqkx9ny1msxcdcrcz7kr5njswyw55a"; depends=[irlba LaplacesDemon MASS Matrix Rcpp RcppArmadillo]; }; + SpaDES = derive2 { name="SpaDES"; version="2.0.11"; sha256="0clanr9cwyjhpjv5wsfhm34rmpf5gjh1hq0pzh6p1yp63wnj13m8"; depends=[quickPlot reproducible SpaDES_core SpaDES_tools]; }; + SpaDES_core = derive2 { name="SpaDES.core"; version="2.1.0"; sha256="0avn2fvabwq8hfvpwkvrpmdq9692a8nx3km7343j217y7l4s7qdf"; depends=[cli data_table fs igraph lobstr qs quickPlot reproducible Require terra whisker]; }; + SpaDES_tools = derive2 { name="SpaDES.tools"; version="2.0.7"; sha256="1kxjwxjr8ncjygj94wpp8z2q58hrb0fyhnz3ajp1jlgpdz3jripi"; depends=[backports checkmate data_table fpCompare Rcpp reproducible terra]; }; + SpaTopic = derive2 { name="SpaTopic"; version="1.1.0"; sha256="19jyxav7mbhpfi85b99wk6lah81ra81r5vbj4l6xm75fli4g3qzm"; depends=[foreach iterators RANN Rcpp RcppArmadillo RcppProgress sf]; }; + SpaceTimeBSS = derive2 { name="SpaceTimeBSS"; version="0.4-0"; sha256="04gh8qcv949s9h94dydmj2bnipih8wnv6ml7iczqmjqich1i272m"; depends=[JADE Matrix Rcpp RcppArmadillo]; }; SpadeR = derive2 { name="SpadeR"; version="0.1.1"; sha256="0iy2rkq4vvps1a73kqq37zpsyl4pvl3vh07dwvpfhvp7f8nxbx99"; depends=[]; }; SparseBiplots = derive2 { name="SparseBiplots"; version="4.0.1"; sha256="0jiyafhsddqa3llrp62lf8bgcvs3wp2pxc8ppaxx4zphkifw2yhr"; depends=[ggplot2 ggrepel gtable rlang sparsepca testthat]; }; SparseChol = derive2 { name="SparseChol"; version="0.3.1"; sha256="1gva9665mlr8g14l7g6z591yhz2j6xpf56bhqhm6is3dbhl2ga24"; depends=[Matrix Rcpp RcppEigen]; }; @@ -5407,25 +5507,26 @@ in with self; { SparseFunClust = derive2 { name="SparseFunClust"; version="1.0.0"; sha256="1p3spmgg7plkh7ppc80gqpnl8c29wfnaa89d5z71qij02lwrcxyg"; depends=[cluster]; }; SparseGrid = derive2 { name="SparseGrid"; version="0.8.2"; sha256="057xbj2bhjm9i32kn39iscnqqdsvsmq0b8c92l8hnf9avf1sx10x"; depends=[]; }; SparseLPM = derive2 { name="SparseLPM"; version="1.0"; sha256="1mpjf7yk2haa8hch315davb6nrhxhy0w2vgw2x4111rn4bskhd8m"; depends=[gtools Rcpp RcppArmadillo vegan]; }; - SparseM = derive2 { name="SparseM"; version="1.81"; sha256="0csbqd9wm6r4162mday1iaigzf9wv2rp1zq8hnihys6f38w8z0xx"; depends=[]; }; + SparseM = derive2 { name="SparseM"; version="1.83"; sha256="0nh9nwp4k0mvvp8rawsxvbl4bk5pgzbpnx2xia3mrzw1y5f5szph"; depends=[]; }; SparseMDC = derive2 { name="SparseMDC"; version="0.99.5"; sha256="0d3ashk3l9fjdbiyjhaxc05ayyscissrg7lwhnh46hv3fydbixlj"; depends=[doParallel doRNG foreach]; }; SparseMSE = derive2 { name="SparseMSE"; version="2.0.1"; sha256="1alpvj0ya3r64wwfdzz2aaxgaf6512glzl65p97606c2fwrm6db7"; depends=[lpSolve Rcapture]; }; SparseTSCGM = derive2 { name="SparseTSCGM"; version="4.0"; sha256="01lfb3j907244hgapb85kba7zdmgzhw452gri208qgrjzfv2x9yh"; depends=[abind glasso huge longitudinal MASS mvtnorm network]; }; SparseVFC = derive2 { name="SparseVFC"; version="0.1.2"; sha256="0d4394jg5fk4cgpds014xl3dhf7wlx5i99bnxpj5xcbvfdqzvwvl"; depends=[pdist purrr]; }; SpatEntropy = derive2 { name="SpatEntropy"; version="2.2-4"; sha256="0krcyymvwdcckiji1dlm9pyc2x82k5dfkvglfchv8w5kf6y2qmbh"; depends=[spatstat spatstat_geom spatstat_random]; }; + SpatGC = derive2 { name="SpatGC"; version="0.1.0"; sha256="1y7lxxg39rd3y0ba5rsg4majbgjj5ld22kkx1w3fg1qhj9xacmnc"; depends=[mvtnorm sf spdep]; }; SpatGRID = derive2 { name="SpatGRID"; version="0.1.0"; sha256="10388v6fzykgxd35mvknrz92mvgby2vnsyw6jb2xi94fj21ybkp9"; depends=[qpdf raster sf sp]; }; SpatMCA = derive2 { name="SpatMCA"; version="1.0.4"; sha256="051c6mdij04n7xc256qx0119gsg337w2xly3ykiy47nrd3svdvc3"; depends=[ggplot2 MASS Rcpp RcppArmadillo RcppParallel scales]; }; SpatPCA = derive2 { name="SpatPCA"; version="1.3.5"; sha256="1lx429glr6273ssy1in192jx4iynqidkfmj9iibwiij3fk9y0sa5"; depends=[ggplot2 Rcpp RcppArmadillo RcppParallel]; }; - SpatialAcc = derive2 { name="SpatialAcc"; version="0.1-4"; sha256="09rkzfzg6nh4n7dizkqrz651kp617l2557c9qpxacspl3ngbm82i"; depends=[sp]; }; + SpatialAcc = derive2 { name="SpatialAcc"; version="0.1-5"; sha256="1livfnkqm9d0aw1q1m944clyj850n5m1n32k99vwf4byl5d5vhnn"; depends=[sp]; }; SpatialBSS = derive2 { name="SpatialBSS"; version="0.14-0"; sha256="0z8k4wd5rlx3bmp4zmfvblkf4nrkkqqfcpv5wzncyhi2ffgnybvm"; depends=[distances JADE Rcpp RcppArmadillo robustbase sp SpatialNP]; }; - SpatialDDLS = derive2 { name="SpatialDDLS"; version="1.0.1"; sha256="1k40bjdxb0yic6h9rvad8l37v2pq2nb7khgl1hfml5xjznjp5k57"; depends=[dplyr FNN ggplot2 ggpubr grr gtools keras Matrix pbapply reshape2 reticulate rlang S4Vectors scran scuttle SingleCellExperiment SpatialExperiment SummarizedExperiment tensorflow zinbwave]; }; + SpatialDDLS = derive2 { name="SpatialDDLS"; version="1.0.2"; sha256="1wnyy7wi7bqlm2wjmjw18b7fxyi0ngfry4rzdb4q0fl6x0lkl0hj"; depends=[dplyr FNN ggplot2 ggpubr grr gtools keras Matrix pbapply reshape2 reticulate rlang S4Vectors scran scuttle SingleCellExperiment SpatialExperiment SummarizedExperiment tensorflow zinbwave]; }; SpatialEpi = derive2 { name="SpatialEpi"; version="1.2.8"; sha256="0q14scafm31xansk5zkhk6hb5jqcmi519jsd4drwkfvvdk8hf93d"; depends=[MASS Rcpp RcppArmadillo sp spdep]; }; SpatialExtremes = derive2 { name="SpatialExtremes"; version="2.1-0"; sha256="0z1swxp1syz8hdskarjxx4sdd7wx835kcnb783bwqm235yh991j3"; depends=[fields maps]; }; - SpatialGEV = derive2 { name="SpatialGEV"; version="1.0.0"; sha256="0g4v84a4c14a2vf7y055j9jgcki7q4182lmmmphrahiqwnjxhm1b"; depends=[evd mvtnorm TMB]; }; + SpatialGEV = derive2 { name="SpatialGEV"; version="1.0.1"; sha256="1wk55vllcsqclzb9cb81pf28gkwxpql8kycyxry6b2ic6c32xgp4"; depends=[evd Matrix mvtnorm RcppEigen TMB]; }; SpatialGraph = derive2 { name="SpatialGraph"; version="1.0-4"; sha256="1875vi3dm6jm7bfmc9ydn4aaygls0c0k5pk540qq2f3ywbfq10zd"; depends=[igraph pracma sf shape sp splancs]; }; SpatialKDE = derive2 { name="SpatialKDE"; version="0.8.2"; sha256="15s72mjz3pqny5i2c6xg5k4dzwb6d00zg8gihik91f8j06fy9w6r"; depends=[cpp11 dplyr glue magrittr progress raster rlang sf vctrs]; }; SpatialKWD = derive2 { name="SpatialKWD"; version="0.4.1"; sha256="0b5vfsmpl3zxcwsg7bj85kfbyv8a2bgfq72b3rk4r6ms7ngc5i16"; depends=[Rcpp]; }; - SpatialML = derive2 { name="SpatialML"; version="0.1.6"; sha256="133iwzbxy8ix2kfa1w6ic6sfip2jkrkw22h3acvh55fcwia7pk08"; depends=[caret randomForest ranger]; }; + SpatialML = derive2 { name="SpatialML"; version="0.1.7"; sha256="05jjv441knmqci66vgy0lsp17hv3fmkfn1ijci5phn39cx797zf5"; depends=[caret randomForest ranger]; }; SpatialNP = derive2 { name="SpatialNP"; version="1.1-5"; sha256="0cxh1f4182mfihq6m82zh2lgafrsiqvgrfxbk66zkjrrbfn8gkcl"; depends=[]; }; SpatialPOP = derive2 { name="SpatialPOP"; version="0.1.0"; sha256="0pgd4injkimjp6pid42arhfbavx2i8crkdvqr35bjvf26p7hbvv3"; depends=[MASS numbers qpdf]; }; SpatialPack = derive2 { name="SpatialPack"; version="0.4"; sha256="138q209gyggpfa1ha1yc6czpv0lxp6acggvp4yc4nbcnkxnvqzwb"; depends=[fastmatrix]; }; @@ -5455,9 +5556,9 @@ in with self; { SplitKnockoff = derive2 { name="SplitKnockoff"; version="1.2"; sha256="1ywh86gkkcc2dddqfgs5w8w9wyjfqmvcr31jga41ddvj5rb8zkhx"; depends=[ggplot2 glmnet latex2exp MASS Matrix mvtnorm RSpectra]; }; SplitReg = derive2 { name="SplitReg"; version="1.0.2"; sha256="1s012qldrsq8rpfpzf7kyd7631b65zai269x53xcaqn75r5ssh3f"; depends=[Rcpp RcppArmadillo]; }; SplitSoftening = derive2 { name="SplitSoftening"; version="2.1-0"; sha256="1fgcqax81zpknw642fm9dx1f6dpdgbcf3va0m1bhj6kl98yq7dqd"; depends=[]; }; + SplitSplitPlot = derive2 { name="SplitSplitPlot"; version="0.0.1"; sha256="0k10is14z27gndqmg0sr9mgvpymayi9z2vv5fwqmvfvxg8y7j4hl"; depends=[]; }; SportsTour = derive2 { name="SportsTour"; version="0.1.0"; sha256="06d66yv0b7c3mg1bcnrlg576njxgri107ni0vnl27hzf46fyidwa"; depends=[]; }; - SpotSampling = derive2 { name="SpotSampling"; version="0.1.0"; sha256="0s47dvigzkcl9ynrdiwrjzwap18dpkb29jngi8ddvf9m4xywj4al"; depends=[BalancedSampling MASS pracma sampling WaveSampling]; }; - SqlRender = derive2 { name="SqlRender"; version="1.17.0"; sha256="0z5q8jizh0r4zngngq30ii787yppg06phcd9hszfs7qlwq3xsw7x"; depends=[checkmate rJava rlang]; }; + SqlRender = derive2 { name="SqlRender"; version="1.18.0"; sha256="0vkxz5gl0df4yw81a698jclsph4z65v74qglfhagp1p3xknkjwy9"; depends=[checkmate rJava rlang]; }; SqueakR = derive2 { name="SqueakR"; version="1.3.0"; sha256="09l6dj1xq2zxxy6jnh1dl4rlcbx06fvf0jp2nypv3497dn97jsrh"; depends=[dplyr ggcorrplot ggeasy gghighlight ggplot2 ggpubr googlesheets4 MASS plotly RColorBrewer readxl report rlist rstatix shiny shinydashboard]; }; Sshaped = derive2 { name="Sshaped"; version="1.1"; sha256="0jy926ykyw7a2q0wabbvm2sm2g4d5y8wl6na4xjmf0ybr6rma458"; depends=[Rcpp RcppArmadillo]; }; Sstack = derive2 { name="Sstack"; version="1.0.1"; sha256="137vsas2kw3l37c141g51sgx0j6z8ys6hbxjmsdymz1fxsjr4adg"; depends=[doParallel dplyr foreach randomForest]; }; @@ -5469,12 +5570,12 @@ in with self; { StableEstim = derive2 { name="StableEstim"; version="2.2"; sha256="0z8ia3zqkidnpg2zl055msc0dmhbsq73h8c43y0vfmhdzqszcx9d"; depends=[fBasics MASS Matrix numDeriv Rdpack stabledist testthat xtable]; }; StackImpute = derive2 { name="StackImpute"; version="0.1.0"; sha256="07b83bql9ch3arxzv94mllb61d4sv20lvpixlpzi7k8cjdddqizd"; depends=[boot dplyr magrittr MASS mice sandwich zoo]; }; StakeholderAnalysis = derive2 { name="StakeholderAnalysis"; version="1.2"; sha256="164mah8h8izxaqp8hc43l6mlnf95pydkcx2laqrlqr9b0bybadxb"; depends=[]; }; - StanHeaders = derive2 { name="StanHeaders"; version="2.32.6"; sha256="18p1rch5ipj0f4jdvr8mnlk8pg1l4njjj4cgbp7ni7kcngsn3049"; depends=[RcppEigen RcppParallel]; }; + StanHeaders = derive2 { name="StanHeaders"; version="2.32.9"; sha256="0cqb5q9pi02vahr4fif07p4r3p2sik953a9i78z1j00j9srzxc17"; depends=[RcppEigen RcppParallel]; }; StanMoMo = derive2 { name="StanMoMo"; version="1.2.0"; sha256="0hdh5c5zigmqs3v3ryk1h91w1a2mlqqjwbq51528w159frnd9mrl"; depends=[BH bridgesampling dplyr ggplot2 httr latex2exp loo Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tibble tidyr tidyselect tidyverse]; }; Stat2Data = derive2 { name="Stat2Data"; version="2.0.0"; sha256="1fpp3b4k7x915a9wkpyj4dvvqp0wz7c3lpbh154vrxrdsr712z0k"; depends=[]; }; StatDA = derive2 { name="StatDA"; version="1.7.11"; sha256="0jp0qd96z2z2w7lqkyy0csz45fk0774wjf57idqbla3n21jbn4q9"; depends=[cluster e1071 geoR MASS MBA mgcv rgl robustbase sgeostat sp xtable]; }; StatDataML = derive2 { name="StatDataML"; version="1.0-27"; sha256="168bydradzprvvyfchzq4g3nc6f8kpgd5165i02nhj1irwxa6jh8"; depends=[XML]; }; - StatMatch = derive2 { name="StatMatch"; version="1.4.1"; sha256="1iavyaj6q8rbvhki98q8zwikfrgjrp6w8prhnqhiv0yb8k27jm0c"; depends=[ggplot2 lpSolve proxy survey]; }; + StatMatch = derive2 { name="StatMatch"; version="1.4.2"; sha256="0kwmxrhmcd74gm6nnqqnqa3jy60050a113l5hspjix8q7s99ybw5"; depends=[dplyr ggplot2 lpSolve proxy survey]; }; StatPerMeCo = derive2 { name="StatPerMeCo"; version="0.1.0"; sha256="1nm6brlj6h7jx8nqagrfk294ay3pfmkiizabwlb87qfnsfwchpk3"; depends=[]; }; StatRank = derive2 { name="StatRank"; version="0.0.6"; sha256="14d8v3bp8vgksi6q0mxajwd9s8zi6lns3qwi1vcr5xp9rjp4n6iy"; depends=[ggplot2 plyr truncdist]; }; Statamarkdown = derive2 { name="Statamarkdown"; version="0.9.2"; sha256="1ir2qh492q0rn6rwnmvj2cxqsssmsd5hm9vlyg0r7dk22grh19z0"; depends=[knitr xfun]; }; @@ -5485,12 +5586,12 @@ in with self; { StempCens = derive2 { name="StempCens"; version="1.1.0"; sha256="0jphyikfggx0yj5f5k3fykf3fdv9msppymzpyin1m7xfmfi5cwia"; depends=[distances ggplot2 MCMCglmm mvtnorm Rcpp RcppArmadillo Rdpack tmvtnorm]; }; StepBeta = derive2 { name="StepBeta"; version="2.1.0"; sha256="1wr0f4c64hkhq8kjv6vf8laz5pmlyc0ajgd8007q8jris4jydzs6"; depends=[aod betareg combinat glue MASS]; }; StepGWR = derive2 { name="StepGWR"; version="0.1.0"; sha256="0sqgixmxla1sv3jkjhby0gggzs3iyg1cwq267y9hymzx2gsafry5"; depends=[MASS numbers qpdf]; }; - StepReg = derive2 { name="StepReg"; version="1.5.0"; sha256="0p0lc00afabvpxr8wslipx0n6kkngg9ljcc8yi659aybjyszjhx3"; depends=[cowplot dplyr DT flextable GGally ggcorrplot ggplot2 ggrepel purrr rlang rmarkdown shiny shinycssloaders shinyjs shinythemes stringr summarytools survival tidyr xlsx]; }; + StepReg = derive2 { name="StepReg"; version="1.5.1"; sha256="0a7ywq6sfvny4mnknr15vqi2466vmv00qh6hwzdbr0lk873gq000"; depends=[cowplot dplyr DT flextable ggcorrplot ggplot2 ggrepel MASS purrr rmarkdown shiny shinycssloaders shinyjs shinythemes stringr summarytools survival tidyr]; }; StepSignalMargiLike = derive2 { name="StepSignalMargiLike"; version="2.6.0"; sha256="0j85lvs2bljfhf482r31sq3xgk8l73hcw22wgxxp8z8nla38cwf9"; depends=[Rcpp]; }; - SteppedPower = derive2 { name="SteppedPower"; version="0.3.4"; sha256="0y31685vs3h5irz5f3gmqayz9bwkra2w2vgj8774q93jicza1vmf"; depends=[Matrix plotly Rfast]; }; + SteppedPower = derive2 { name="SteppedPower"; version="0.3.5"; sha256="0dxl88gfwi6wb9k4qmqhb9hqgvjpzbvwfpiqadzjwg1h6yg487y5"; depends=[Matrix plotly Rfast]; }; StepwiseTest = derive2 { name="StepwiseTest"; version="1.0"; sha256="1fdm4s9l6grgd45r98ybbsh40rnmnn16c0id6lv28cpmssi0iphi"; depends=[Rcpp RcppArmadillo]; }; StereoMorph = derive2 { name="StereoMorph"; version="1.6.7"; sha256="0qrbl86ba83j4r6j2phap5n6ryi729gbypn95h0vbgrv752nayqp"; depends=[bezier jpeg MASS png Rcpp rjson shiny svgViewR tiff]; }; - SticsRFiles = derive2 { name="SticsRFiles"; version="1.2.0"; sha256="1nybxf5c76498s20yb69v9dgvcvbpr10sk6qy14iimpxqy6n382j"; depends=[cli crayon curl data_table dplyr lifecycle lubridate rlang rstudioapi stringr tibble tidyr XML xml2 xslt]; }; + SticsRFiles = derive2 { name="SticsRFiles"; version="1.3.0"; sha256="0ldc0rl5www8bz9qc80198h0yiz10kqr9zmlhd7b510bhms0i1wp"; depends=[cli crayon curl data_table dplyr lifecycle lubridate rlang rstudioapi stringr tibble tidyr tidyselect XML xml2 xslt]; }; StochBlock = derive2 { name="StochBlock"; version="0.1.2"; sha256="0g0l36imgw3bvqj5g45abwicswcyqprzbkas9pzgha8dsc5s12w3"; depends=[blockmodeling doParallel doRNG foreach Rcpp RcppArmadillo]; }; StockDistFit = derive2 { name="StockDistFit"; version="1.0.0"; sha256="02af493w8mhkqpwa1h2wvga19rz22b09z2j69yn8r74jfdfj08wz"; depends=[dplyr fBasics fGarch fitdistrplus ghyp magrittr quantmod xts zoo]; }; Storm = derive2 { name="Storm"; version="1.2"; sha256="1fg8y9my9yp6px1gh43mr3m2s2z262mzq03pj52mqg3n186vk8z3"; depends=[permute rjson]; }; @@ -5508,7 +5609,6 @@ in with self; { String2AdjMatrix = derive2 { name="String2AdjMatrix"; version="0.1.0"; sha256="058r30kjjna02nmd6ngqfcnn1yk5390i20xvl6qb5qk3bcp2wmxn"; depends=[stringr]; }; StroupGLMM = derive2 { name="StroupGLMM"; version="0.1.0"; sha256="1w0xizdmwqflfhqwygyq7fw5ci7pdzmr8dfv3j0g3ljbj84kndzd"; depends=[aod broom car ggplot2 lme4 lmerTest lsmeans MASS mutoss nlme pbkrtest phia survey]; }; StrucDiv = derive2 { name="StrucDiv"; version="0.2.1"; sha256="1mzkcij7mrmjj5ccmy0l3xbb75w0bi7vc2cxap3qkycqm1ajk1dr"; depends=[doParallel foreach glue raster Rcpp RcppProgress]; }; - StructFDR = derive2 { name="StructFDR"; version="1.4"; sha256="1gxv2pgypbxgwii5d71zrhasfdj33wjw4jfa3frc4q28nbh8a2l8"; depends=[ape cluster dirmult matrixStats nlme]; }; StructuralDecompose = derive2 { name="StructuralDecompose"; version="0.1.1"; sha256="1iw4knii94wajignrq0c91d66b6bc2qm019ny86jyyj5nd9nxkwz"; depends=[changepoint segmented strucchange]; }; StructureMC = derive2 { name="StructureMC"; version="1.0"; sha256="1pj3inznw6flvmk22dzjcfjnwjhx7r98ngckz0axf6ipp3hb85jn"; depends=[MASS matrixcalc]; }; SuRF_vs = derive2 { name="SuRF.vs"; version="1.1.0.1"; sha256="0yhd6wsifmlr39fxs46b93y0bpqrv5c0zc4sjs2jpdrzivwfq1j5"; depends=[dplyr glmnet survival]; }; @@ -5517,7 +5617,7 @@ in with self; { SubVis = derive2 { name="SubVis"; version="2.0.2"; sha256="1nb3zgm6i5lwfwdrn8mk3wkg8a4ldfvs27ai8v46l4316qc1fa9p"; depends=[Biostrings shiny]; }; SubgrpID = derive2 { name="SubgrpID"; version="0.12"; sha256="0x25n5gm1fl5s157g5a7jszy1rj16151r0jpf61vvsw0c9c58707"; depends=[ggplot2 glmnet MASS Matrix rpart survival]; }; SubpathwayLNCE = derive2 { name="SubpathwayLNCE"; version="1.0"; sha256="051csjavr9549y54yirfdn266i7swsvpbcakhziyz4sl4afwx5kl"; depends=[BiasedUrn graph igraph RBGL]; }; - SubtypeDrug = derive2 { name="SubtypeDrug"; version="0.1.8"; sha256="0710hfq5gd0nw7vp6xxsy3yzxdmgb88k05a0h44w8q0x9dbjcmab"; depends=[BiocGenerics ChemmineR GSVA igraph pheatmap rvest xml2]; }; + SubtypeDrug = derive2 { name="SubtypeDrug"; version="0.1.9"; sha256="1r0sjzjmllicqmqv5phxpqcndh84kjqc779js32rlwbw0x279xhw"; depends=[BiocGenerics ChemmineR GSVA igraph pheatmap rvest xml2]; }; SuessR = derive2 { name="SuessR"; version="0.1.5"; sha256="1rh792x7dyfnhnw6g0f6hb5wqw58j6j11k9xib11ba256qrnvwgc"; depends=[]; }; SummaryLasso = derive2 { name="SummaryLasso"; version="1.2.1"; sha256="1gb1g1xgda5psq93vy50yfr0cbhvymliblpkxz7ck1nwpp65n9py"; depends=[gtools]; }; Sunclarco = derive2 { name="Sunclarco"; version="1.0.0"; sha256="0jv92a4ciwkm0wa4irgb6ql3vf6v6p24fmbnk24pqp5p8drp8g5v"; depends=[survival]; }; @@ -5531,14 +5631,16 @@ in with self; { Superpower = derive2 { name="Superpower"; version="0.2.0"; sha256="0bv2jx3hadp5d9c3q790in3m728c8jc1nkp9wqvzcdip1d29hyin"; depends=[afex dplyr emmeans ggplot2 gridExtra magrittr MASS mvtnorm reshape2 tidyr tidyselect]; }; SuppDists = derive2 { name="SuppDists"; version="1.1-9.7"; sha256="025b9nlxz62wk84295csyzbncpn80i3iby3sxdigf3swcgi2fmbb"; depends=[]; }; SurfaceTortoise = derive2 { name="SurfaceTortoise"; version="2.0.1"; sha256="0l1r495qnqfr3izngv7dmnb13dcp5736khgwmkm7hkxw8fjpzc6j"; depends=[gstat sf terra]; }; - Surrogate = derive2 { name="Surrogate"; version="3.2.5"; sha256="1yb8nfy83zpvaq03gnfhx36jn04lva7y4y16dcl65djrgrs17cqj"; depends=[dplyr extraDistr flexsurv ks lattice latticeExtra lme4 logistf MASS maxLik MBESS msm nlme numDeriv optimx pbapply purrr rms rvinecopulib survival tibble tidyr]; }; + Surrogate = derive2 { name="Surrogate"; version="3.3.0"; sha256="1r4i12f6kmbszrm8v17gp2396ybwv913ngr3mnhqmvsl91fnpwi6"; depends=[dplyr extraDistr flexsurv ks lattice latticeExtra lme4 logistf MASS maxLik MBESS msm nlme numDeriv optimx pbapply purrr rms rvinecopulib survival tibble tidyr]; }; SurrogateBMA = derive2 { name="SurrogateBMA"; version="1.0"; sha256="19q63rdrm4y03xmjmjqvsq8s1fx48jalxshzrdyzms9dacbshr0z"; depends=[MCMCpack mvtnorm Rcpp RcppEigen RcppNumerical Rsurrogate]; }; SurrogateOutcome = derive2 { name="SurrogateOutcome"; version="1.1"; sha256="1wiqn9gfvj225dvmp49fyybp77np507s04f28a9wa9jiyvqf7m97"; depends=[survival]; }; + SurrogateRank = derive2 { name="SurrogateRank"; version="1.0"; sha256="0q90qq3apn8qs6rlmw0vj3iv89mpm85wah2xqjdwvbf8k7hwkgrm"; depends=[]; }; SurrogateRegression = derive2 { name="SurrogateRegression"; version="0.6.0.1"; sha256="0cjw780wzvxp6q4q8m57d3qzv7ivk884h6s6n9walnd8rvrfj414"; depends=[Rcpp RcppArmadillo]; }; SurrogateRsq = derive2 { name="SurrogateRsq"; version="0.2.1"; sha256="1g77cwp5cdldhqlp3k7f7pzxjww2pxgr842qd3fr2k0gzg2s246a"; depends=[MASS PAsso progress scales]; }; SurrogateTest = derive2 { name="SurrogateTest"; version="1.3"; sha256="0vs1ii3l6i6cmswyv6xjbya5filfixppyzmnw099g9s4x8kn0kq7"; depends=[survival]; }; SurvCorr = derive2 { name="SurvCorr"; version="1.1"; sha256="0pccjc9zdvbb869wfywm23l63h1bpi5px4q5x7fq54pm0iyi1k73"; depends=[fields survival]; }; SurvDisc = derive2 { name="SurvDisc"; version="0.1.1"; sha256="0ajvnm0a4krbm0m584bg58hd7dzl0f2rz5as1zsajx8agywb5qmv"; depends=[cubature MASS mvtnorm nlme simex survival]; }; + SurvEval = derive2 { name="SurvEval"; version="1.1"; sha256="0xhlfzcyniwy1wb68cdq3in9kq5w5m4439jgjmbrcrhplxab1cm0"; depends=[Rcpp survival]; }; SurvHiDim = derive2 { name="SurvHiDim"; version="0.1.1"; sha256="1kix00zfrbx11pwx2dfag8vz5nvf8siw2kbxi8g4fb7xib9wh2na"; depends=[factoextra glmnet igraph Rdpack readr survival tidyverse useful]; }; SurvLong = derive2 { name="SurvLong"; version="1.4"; sha256="004s62c5w4lrp55g883iz8plviaij86m5wiaxcmqxaf5709sbk9g"; depends=[]; }; SurvMI = derive2 { name="SurvMI"; version="0.1.0"; sha256="0qgsgz11vz73v83bkxrrjwk7i26rllkxk97if3nw2rgl9jnmiih0"; depends=[survival zoo]; }; @@ -5547,7 +5649,9 @@ in with self; { SurvSparse = derive2 { name="SurvSparse"; version="0.1"; sha256="14v0319w2k6b5cmpfrcxc2h3558lrpf101mhbpkqy0k4ahsb0sax"; depends=[dplyr foreach gaussquad MASS nleqslv nloptr purrr tibble tidyr]; }; SurvTrunc = derive2 { name="SurvTrunc"; version="0.2.0"; sha256="0zkjlndmg0rc7ycqy2v42nyzs4sd9z1y9y9kwfdci9qrc88nnfmn"; depends=[survival]; }; SurveyCC = derive2 { name="SurveyCC"; version="0.1.1"; sha256="1jhgc6alrpib0qhnh2l9zp9nvy8vfgi2y4dy26vh92rqhdym19ss"; depends=[candisc survey]; }; - SurvivalClusteringTree = derive2 { name="SurvivalClusteringTree"; version="1.0"; sha256="1h5iwwlw1gh82laargp7pwpspc7jljzizpyv251gsgdjrms72p79"; depends=[dplyr formula_tools gridtext Rcpp RcppArmadillo survival]; }; + SurveyDefense = derive2 { name="SurveyDefense"; version="0.1.0"; sha256="1n0a1h4bzmxidzf5rszrpsmxj7kd7dw0flrpc8mps6glf8ikw7pq"; depends=[flextable]; }; + SurviMChd = derive2 { name="SurviMChd"; version="0.1.2"; sha256="1lwbs9b8kc6lhlfjziphmdhm7h8p6d4fbhihsmjdi8lwngvpgxx8"; depends=[dplyr R2jags rjags]; }; + SurvivalClusteringTree = derive2 { name="SurvivalClusteringTree"; version="1.1.1"; sha256="1wxyk0b22igv319dpidm0b1wjp675k9z1araqzdd140lxan8nndf"; depends=[dplyr formula_tools gridtext Rcpp RcppArmadillo survival]; }; SurvivalTests = derive2 { name="SurvivalTests"; version="1.0"; sha256="1yhl9pg5dbfkqrkl5i1da7c8zhianj2qgbs5arfk6lj6w3vqmnb9"; depends=[ggplot2 weibullness]; }; SvyNom = derive2 { name="SvyNom"; version="1.2"; sha256="0s9gn10v6a8n6898g0gmdrw51z7y98klji59sn06dfbsxlswlv11"; depends=[Hmisc rms survey survival]; }; SweepDiscovery = derive2 { name="SweepDiscovery"; version="0.1.1"; sha256="1302bhkbgb898jjjpmn4gvfj3qid54bbk24d41ssz55cbyaqsimm"; depends=[randomForest]; }; @@ -5565,7 +5669,7 @@ in with self; { SynthTools = derive2 { name="SynthTools"; version="1.0.1"; sha256="19vasz3nnm5vgwqs6g2a5bibmk44br1bxga5zavsx938x3jw9gnd"; depends=[dplyr magrittr Rdpack]; }; Sysrecon = derive2 { name="Sysrecon"; version="0.1.3"; sha256="01vbkv707m31bf69j3vxfiwgvaz56v2yr6da0j0796rcmca1d4b8"; depends=[ape dplyr ggplot2 ggtree magrittr patchwork plyr RColorBrewer rlang SnowballC stringr tm]; }; SystemicR = derive2 { name="SystemicR"; version="0.1.0"; sha256="1vk08w734zxvrwzd81iy0azwcj53k6wvgc1qlaxw96hirdwdg6zr"; depends=[igraph Matrix quantreg xts]; }; - T2DFitTailor = derive2 { name="T2DFitTailor"; version="1.0.0"; sha256="1cyml3dfblsv8mc61j8kzvj8h9gbcj4qph124028492a2cxvgjj4"; depends=[dplyr fmsb httr jsonlite]; }; + T2DFitTailor = derive2 { name="T2DFitTailor"; version="3.0.0"; sha256="1491cn8gx1ijkdg33p0fiyiam80aiisd489hqn76ijsbhkagm51c"; depends=[dplyr fmsb httr jsonlite]; }; T2EQ = derive2 { name="T2EQ"; version="1.1"; sha256="1skkkryw63pfx1xslia1lczb2psja6v6hcbph4isdcksb4l4pcig"; depends=[]; }; T2Qv = derive2 { name="T2Qv"; version="0.2.0"; sha256="1dvr8k2wifl2jl4rpc1gbi5d5shmrhnhfmj9kfqlwsbsrrnh493p"; depends=[ca dplyr highcharter htmltools purrr shiny shinycssloaders shinydashboard shinydashboardPlus stringr tables tidyr]; }; T4cluster = derive2 { name="T4cluster"; version="0.1.2"; sha256="0wai4qgpkwc1p5wwpvi0z6zrcj9ha1wiy27qjpcfvfa2bhaid2w5"; depends=[ADMM fda ggplot2 lpSolve maotai MASS mclustcomp Rcpp RcppArmadillo Rdimtools Rdpack rstiefel scatterplot3d]; }; @@ -5580,11 +5684,13 @@ in with self; { TBEST = derive2 { name="TBEST"; version="5.2"; sha256="19dfsvr693w93j6shzk09v1457ayixsxkdbndgv3kawqp1lzhvjx"; depends=[fdrtool signal]; }; TBFmultinomial = derive2 { name="TBFmultinomial"; version="0.1.3"; sha256="0cd0dr8vkf0sfriaafp2x63dilxmirm0fljxm82zw77c9j5ly3kv"; depends=[nnet plotrix stringr VGAM]; }; TBRDist = derive2 { name="TBRDist"; version="1.0.2"; sha256="0xwr91fyx3x27szkafmcs5sffgs64svky7mddrrgcfnbdl5c4iia"; depends=[ape BH Rcpp Rdpack TreeDist TreeTools]; }; + TBox = derive2 { name="TBox"; version="0.1.2"; sha256="19s51kwid7fnshlsp8wisp221kk7nv2ii5dyhnxrc6krisb45746"; depends=[checkmate clipr knitr rmarkdown]; }; TCA = derive2 { name="TCA"; version="1.2.1"; sha256="1gyps0m7r44vcbzpbrs3xy2kyb2xsvmfzk1c0aq04s4ndcksplwb"; depends=[config data_table futile_logger gmodels Matrix matrixcalc matrixStats nloptr pbapply pracma quadprog rsvd]; }; TCGAretriever = derive2 { name="TCGAretriever"; version="1.9.1"; sha256="1x97yr6z1krykvwis90z7vyk9rhz96lkvgbmb32l4h1h5lqdwxny"; depends=[httr jsonlite reshape2]; }; TCHazaRds = derive2 { name="TCHazaRds"; version="1.0"; sha256="00x6iyf61igagcjyrl5623yymcrplm35k8j7326vx13g4lzsmnln"; depends=[geosphere latticeExtra ncdf4 raster rasterVis Rcpp sp terra]; }; TCIApathfinder = derive2 { name="TCIApathfinder"; version="1.0.6"; sha256="15f3w6vhbqy4xzidxasjnqigxchd3jbr2kpm3gggjnkp7rzsfgaf"; depends=[httr jsonlite]; }; - TCIU = derive2 { name="TCIU"; version="1.2.5"; sha256="19xsp3ii8abifg5cqr3jgsh2jw5mmgiqqh8g0pxk9zmjqwm0javp"; depends=[cubature doParallel dplyr DT extraDistr fancycut fmri foreach forecast geometry ggplot2 ggpubr gridExtra ICSNP MultiwayRegression plotly pracma RColorBrewer reshape2 rrcov scales spatstat_explore spatstat_geom tidyr zoo]; }; + TCIU = derive2 { name="TCIU"; version="1.2.6"; sha256="0gbzpd0yadxrlsmnwk4kzf6bvm504k18i0sf2bq6zjaczdhc0vkp"; depends=[cubature doParallel dplyr DT extraDistr fancycut fmri foreach forecast geometry ggplot2 ggpubr gridExtra ICSNP interp MultiwayRegression plotly pracma RColorBrewer reshape2 rrcov scales spatstat_explore spatstat_geom tidyr zoo]; }; + TCPMOR = derive2 { name="TCPMOR"; version="1.0"; sha256="10zbslpkc9kd7piakrkch71y20pgzmfw6vfmi6slsicqq50grca6"; depends=[SemiPar]; }; TDA = derive2 { name="TDA"; version="1.9.1"; sha256="1zf01dlc95mi59yrwz98w6qridmixgm399r0dq4g02xinz7dnar3"; depends=[BH FNN igraph Rcpp RcppEigen scales]; }; TDAkit = derive2 { name="TDAkit"; version="0.1.2"; sha256="1gvcv3016kjk98qm07i972fi66bcljj1avmagyc8qxs29cq3ngg3"; depends=[energy ggplot2 maotai Rcpp RcppArmadillo Rdpack T4cluster TDAstats]; }; TDApplied = derive2 { name="TDApplied"; version="3.0.3"; sha256="112zkkmi2677kyxkrk2669xdcr7g3f7saqa4iy2qi8k36all87l7"; depends=[clue doParallel foreach iterators kernlab parallelly Rcpp rdist]; }; @@ -5594,6 +5700,7 @@ in with self; { TDCor = derive2 { name="TDCor"; version="0.1-2"; sha256="18085prcwhl5w717f1f7jcqskw2jvigvjjs2l5y6106ibiam6hxx"; depends=[deSolve]; }; TDLM = derive2 { name="TDLM"; version="1.0.0"; sha256="05gjbmhnamm94facg590sd1m7l3x51crd7x21ly6gmwyq5rjlffm"; depends=[Ecume mathjaxr Rdpack readr rmarkdown sf]; }; TDPanalysis = derive2 { name="TDPanalysis"; version="1.0"; sha256="0kvbsgwl7b9a3hn4d3snajqmynbajd2d8lc1na0hri2cv8qm8x9h"; depends=[plyr]; }; + TDSTNN = derive2 { name="TDSTNN"; version="0.1.0"; sha256="0ql4z0r04bcj6m6m7kshg3kqnlmx1cy62kfmm98x23ggfxi67a4i"; depends=[nnet]; }; TDbook = derive2 { name="TDbook"; version="0.0.6"; sha256="127bvwy65fr0nm7gw4mqcjm6dfrvlnl77z4ig2bpfxy7a0xq67gp"; depends=[]; }; TDboost = derive2 { name="TDboost"; version="1.5"; sha256="1lx5g6yrp43m0dhhs0iig9chlvqbbim5xq5i2bxy4frs2afka22g"; depends=[lattice]; }; TE = derive2 { name="TE"; version="0.3-0"; sha256="15530a5qjlh74c1qji76j25mm4c59gifp34y066f8j21f70rahfs"; depends=[MASS rainbow]; }; @@ -5615,20 +5722,19 @@ in with self; { TIMP = derive2 { name="TIMP"; version="1.13.6"; sha256="1if2qm40nlz54pylqvdp4pk2jmicn8wkdlywrkr5hn80c0yyy879"; depends=[colorspace deSolve fields gclus gplots minpack_lm nnls]; }; TITAN2 = derive2 { name="TITAN2"; version="2.4.3"; sha256="0lnkgfa3dq38ad0rpyzwq12kv4vb19wzx17sw8f1vfzpkgf5v4qa"; depends=[cli cowplot dplyr ggplot2 ggridges glue purrr tibble]; }; TITEgBOIN = derive2 { name="TITEgBOIN"; version="0.3.0"; sha256="088gc9i5zv6bysbrsmw7y6if6kgj0gz70dmsn2zj1053mq14pnkj"; depends=[]; }; - TKCat = derive2 { name="TKCat"; version="1.0.7"; sha256="0j3m10adfc3k7znaissl1w6pqg5mf2qhl4r2i89qjdmw0i1h27pa"; depends=[base64enc ClickHouseHTTP DBI dplyr DT future getPass htmltools jsonlite jsonvalidate magrittr markdown Matrix promises readr ReDaMoR rlang shiny shinydashboard tidyselect uuid visNetwork xml2]; }; + TKCat = derive2 { name="TKCat"; version="1.1.8"; sha256="0a2jfgg8rcgx4nckzmxk9a9jm4250a78pzcfaxj08d2gbkxairwz"; depends=[base64enc ClickHouseHTTP crayon DBI dplyr DT future getPass htmltools jsonlite jsonvalidate magrittr markdown Matrix promises readr ReDaMoR rlang roxygen2 shiny shinydashboard tidyselect uuid visNetwork xml2]; }; TLCAR = derive2 { name="TLCAR"; version="0.1.0"; sha256="18wzr7lgzffalvacbr1617d4v50mhd13wqbyr9iyhgc07z2pfncn"; depends=[dplyr ggplot2]; }; TLMoments = derive2 { name="TLMoments"; version="0.7.5.3"; sha256="096sr0j4vhlfsaxc565zgw0mjk4sxkl03i7ip3hzcfph1c05yj6h"; depends=[ggplot2 hypergeo lmomco Rcpp]; }; - TMB = derive2 { name="TMB"; version="1.9.10"; sha256="1cc34zxn2x88fbh4clgbzia36800i30pdlywbkwc26zm50nsxpwi"; depends=[Matrix RcppEigen]; }; + TMB = derive2 { name="TMB"; version="1.9.11"; sha256="07z9565rn64k3ysvcgq6s792qg1v102gd9in5ifigm140zc4l45j"; depends=[Matrix RcppEigen]; }; TMDb = derive2 { name="TMDb"; version="1.1"; sha256="062n9mi2f9g2xxpnymja57xnpl855d8mwyfwci7a8cq4c7w7avj7"; depends=[httr jsonlite stringi]; }; TML = derive2 { name="TML"; version="1.2.0"; sha256="0krnh14mi3vi4msiz84f56kmzq12b1qc246jny37isl1b2wz2zrp"; depends=[ape cluster combinat gtools lpSolve lpSolveAPI magick maps MASS Matrix miscTools phangorn phytools rcdd RcppAlgos Rfast rgl ROCR stringr]; }; - TMTI = derive2 { name="TMTI"; version="1.0.1"; sha256="080k4lmwspxi6salv4zq9lipwcah3zr6vfc0lrll1z8gynk8arq9"; depends=[Rcpp]; }; TNC = derive2 { name="TNC"; version="0.1.0"; sha256="0639wvylmk9mapvmz79ij65g1phv3ylc683awi4pgaf9yfwlmjkn"; depends=[]; }; - TNRS = derive2 { name="TNRS"; version="0.3.5"; sha256="116gmvaccjk7kcrvgzknil2icsvhp53lmg4cn1676801saz25wyz"; depends=[httr jsonlite]; }; + TNRS = derive2 { name="TNRS"; version="0.3.6"; sha256="1qv9fnqpjx988dxwc8smgqqz4p9knbpl7d8i0d84aq6i392fvx0a"; depends=[httr jsonlite]; }; TOC = derive2 { name="TOC"; version="0.0-6"; sha256="04ampqa2nv77h6is3ch8ril5b3m33hkd3s5gzzq4jrm1mx529dr8"; depends=[bit terra]; }; TOHM = derive2 { name="TOHM"; version="1.4"; sha256="15i9hrvxlnwbs9vrsyrfhnm4xwmi97hss2da0xqs1xj5nmzwymqh"; depends=[EQL igraph Matrix nloptr Rmpfr]; }; TORDs = derive2 { name="TORDs"; version="1.0.0"; sha256="0135xy5gfjnnnchr59i3k0hlxybh5dg3fwqg2z6jv9a3hmkbx21g"; depends=[]; }; TOSI = derive2 { name="TOSI"; version="0.3.0"; sha256="00v0cjyz22akar7jrpg5alnnbh2nhxjh5cmq053i65xl0wlbzdpg"; depends=[glmnet hdi MASS scalreg]; }; - TOSTER = derive2 { name="TOSTER"; version="0.8.1"; sha256="04rwsaa52bmhhlcr0afqrmgl0wk7hw9xq23ylmb4afvp3if0qm3d"; depends=[cowplot distributional ggdist ggplot2 jmvcore lifecycle R6 tidyr]; }; + TOSTER = derive2 { name="TOSTER"; version="0.8.3"; sha256="1xp3hcx4nhxqw9mdqhk9h11wy3zpwci0z0hc38pryq7y6rx8908f"; depends=[cowplot distributional ggdist ggplot2 jmvcore lifecycle R6 tidyr]; }; TOU = derive2 { name="TOU"; version="0.1.0"; sha256="0wia39yj7abnicx4xhaq1g69qx5fmzh6gywyl5yqfmw03azmyl55"; depends=[DEoptim ggplot2 Rdpack]; }; TOmicsVis = derive2 { name="TOmicsVis"; version="2.0.0"; sha256="0s46i8wnvvs15xwb0g62rpn864b27hbx0lrjpcv2wb1s27iz1wv3"; depends=[Biobase circlize clusterProfiler ComplexHeatmap cowplot dplyr e1071 EnhancedVolcano enrichplot factoextra GGally ggcorrplot ggforce ggnewscale ggplot2 ggplotify ggpolypath ggpubr ggrepel ggsci igraph Mfuzz pheatmap plotrix randomcoloR RColorBrewer reshape2 Rtsne shiny stringr survival survminer tidyr umap UpSetR vegan venn WGCNA]; }; TP_idm = derive2 { name="TP.idm"; version="1.5.1"; sha256="0w8sgzm5bmv9m16dryxpw51q000mfmbipxqnhb26bkzr6y46bd79"; depends=[]; }; @@ -5646,7 +5752,7 @@ in with self; { TRAMPR = derive2 { name="TRAMPR"; version="1.0-10"; sha256="0nndacpj1bnj6klvf8z4hl05krlnmyc9h9f813kmypk5fqjnhh38"; depends=[]; }; TRD = derive2 { name="TRD"; version="1.1"; sha256="0bhn4bcrq39f5dgqc74jqsfhs1iqfxhawacqqyncbk2372013nqp"; depends=[Rlab]; }; TRES = derive2 { name="TRES"; version="1.1.5"; sha256="0hrlqr6va7f17i4zizc2val2jxl151h8dbp4f97g0ixlqnv39qjl"; depends=[ManifoldOptim MASS pracma rTensor]; }; - TRMF = derive2 { name="TRMF"; version="0.1.5"; sha256="0zi9v7jgvpcdfjs7pbcfb8ggf89w71zvxmlsr319r1d4spkrskfx"; depends=[generics limSolve Matrix]; }; + TRMF = derive2 { name="TRMF"; version="0.2.1"; sha256="1ar4shr2r58ksk7lzi3dwinp06d7inffrfmnvyb1s289swxg9a1w"; depends=[generics limSolve Matrix]; }; TRexSelector = derive2 { name="TRexSelector"; version="1.0.0"; sha256="1jxf4zxlhyinfa7w5h5zby7wy3bxbpcran5jy9byysgq5k8bqb5w"; depends=[boot doParallel doRNG foreach glmnet MASS tlars]; }; TSA = derive2 { name="TSA"; version="1.3.1"; sha256="14g58s2w7wma1fgcg3b51267b3676zrv0w8v4hpypxygz023d9bx"; depends=[leaps locfit mgcv tseries]; }; TSANN = derive2 { name="TSANN"; version="0.1.0"; sha256="1sk9jq6k5qf8k03yhrb2jmazdh8gi2a17pc5m0agcvxiv4lmp5sp"; depends=[forecast gtools]; }; @@ -5655,6 +5761,7 @@ in with self; { TSDFGS = derive2 { name="TSDFGS"; version="2.0"; sha256="02p4caby7w1hgvizhm4cy0jr9mwwnh7gcq1snvz0cbd4mzpjcqgc"; depends=[dplyr ggplot2 latex2exp lifecycle Rcpp RcppEigen]; }; TSDT = derive2 { name="TSDT"; version="1.0.7"; sha256="0h2nwlzq6p11735nhkkqz6r7lpmw98bwy9dpdmvj4wqb7c64p90p"; depends=[hash mlbench modeltools party rpart survival survRM2]; }; TSE = derive2 { name="TSE"; version="0.1.0"; sha256="0fzdlryb8m9h6q8w0q42wpphmvm439zxk1imqzmskm48r7w6nm7w"; depends=[]; }; + TSEAL = derive2 { name="TSEAL"; version="0.1.2"; sha256="1z1912mmmzyn4nh6cnkpddm5v25n87q1pqhd2q8k136xzncf9h57"; depends=[bigmemory caret checkmate magrittr MASS parallelly pryr statcomp synchronicity waveslim wdm]; }; TSEind = derive2 { name="TSEind"; version="0.1.0"; sha256="0xv968a12p9riq5nk82gq1ixglb2077c99i2a5ws6s23xzs1s29h"; depends=[]; }; TSEntropies = derive2 { name="TSEntropies"; version="0.9"; sha256="1bwb3kyhzc6sxhvpagf4vjmh8ghx44lpc9ms4jwrsrzdhcvnfc7l"; depends=[]; }; TSEtools = derive2 { name="TSEtools"; version="0.2.2"; sha256="09pyq0bqs14qah71j6v8cky6vzgj1pi90q60b0zydj7bcrm4lx9w"; depends=[quadprog quantmod xts]; }; @@ -5725,14 +5832,15 @@ in with self; { TensorTest2D = derive2 { name="TensorTest2D"; version="1.1.1"; sha256="1yx1ggsbximbsrwimyg7jblbqr0f75z278f38hg61qjxzf9m4ndk"; depends=[]; }; Ternary = derive2 { name="Ternary"; version="2.3.1"; sha256="0amdyg41mhny74zdl8xm9f4ljii4w6lncq57xgw7qlq946dfp8zg"; depends=[PlotTools RcppHungarian shiny sp viridisLite]; }; TesiproV = derive2 { name="TesiproV"; version="0.9.2"; sha256="00igkm0y9v363djhig4ydn3bfadqf6rrrdhkai2pl1w876xk2ydw"; depends=[edfun ggplot2 gridExtra nloptr pracma]; }; - TestAnaAPP = derive2 { name="TestAnaAPP"; version="0.1.8"; sha256="0h37jvvw3k291kwkq77b15ypvzh80wmh6jpgjhdcs9lid2k3iq2b"; depends=[bruceR cowplot dplyr DT EstCRM flextable ggplot2 golem mirt officedown officer openxlsx plotrix rmarkdown shiny shinycssloaders shinydashboard stringr tidyr tidySEM]; }; + TestAnaAPP = derive2 { name="TestAnaAPP"; version="1.0.1"; sha256="0550i7d4bpbd9bvs7sbjd5aaqpqjpd2fzfbplxfcvz2q9dwbcp49"; depends=[bruceR cowplot difR dplyr DT EstCRM flextable ggplot2 golem latticeExtra mirt officedown officer openxlsx plotrix rmarkdown shiny shinycssloaders shinydashboard stringr tidyr tidySEM]; }; TestCor = derive2 { name="TestCor"; version="0.0.2.2"; sha256="01ndiqi0z672ymm2bid0r0cqz8fqd9268xgmmq74z3agj81l5c5j"; depends=[MASS Rcpp RcppArmadillo]; }; TestDataImputation = derive2 { name="TestDataImputation"; version="2.3"; sha256="11acpw9vjar6g8n9cifpfs4208j1hqqp15j59mr9pnfwq747hw2z"; depends=[Amelia mice]; }; - TestDesign = derive2 { name="TestDesign"; version="1.5.1"; sha256="1r59zx97g1z49x6lkiqw2kclb88jksgwj589jymwcng3h5ja68ah"; depends=[crayon foreach logitnorm lpSolve Rcpp RcppArmadillo]; }; + TestDesign = derive2 { name="TestDesign"; version="1.6.1"; sha256="0f13d6j9x9knsd7ynz025x4pv61n49jk5m9ih09cm8xz9g1ypb4n"; depends=[crayon foreach logitnorm lpSolve Rcpp RcppArmadillo]; }; TestDimorph = derive2 { name="TestDimorph"; version="0.5.8"; sha256="1gnjgglb2mnaidlhjhqyg4jk6cvw0n0rzzpxamq55n8yyqd2kkh3"; depends=[corrplot dplyr ggplot2 Morpho multcompView tidyr tmvtnorm truncnorm]; }; TestFunctions = derive2 { name="TestFunctions"; version="0.2.1"; sha256="0119ajbmgcfwd7axvx47x3aw3j1hnc2i3fvgrixfd1rgj99hz2vj"; depends=[]; }; TestGardener = derive2 { name="TestGardener"; version="3.3.3"; sha256="1iybx4h46shyki0ihnaxn968lkplnp88l0ld09cx632vhlpis0iv"; depends=[dplyr fda ggplot2 ggpubr knitr plotly pracma rgl rmarkdown stringr tidyr utf8]; }; - TestGenerator = derive2 { name="TestGenerator"; version="0.2.5"; sha256="0gx6s8s9dqjpinkifmgwiqry15pl8kr56yjakaisa1fwdsqj2jzp"; depends=[CDMConnector checkmate DBI dplyr duckdb fs glue jsonlite readxl usethis]; }; + TestGenerator = derive2 { name="TestGenerator"; version="0.3.1"; sha256="15jgcknxdc1nh3325rzlax3q69dgfxb2a3xm2bzpi7fb7ryv5grz"; depends=[CDMConnector checkmate cli DBI dplyr duckdb ggplot2 glue jsonlite readr readxl rlang testthat tibble withr]; }; + TestIndVars = derive2 { name="TestIndVars"; version="0.1.0"; sha256="04imj35ks5dzwizia8r25ahgdxclbskv3s3r8c9k5cqrv4gqppga"; depends=[MASS matrixcalc]; }; TestScorer = derive2 { name="TestScorer"; version="1.7.2"; sha256="006c3g3gx55mfr93srldwvgz5vm6nkr3f57yi4qg6krn0d32865f"; depends=[]; }; TestingSimilarity = derive2 { name="TestingSimilarity"; version="1.1"; sha256="1iq0wh13rl6rby44ql4d286r1akzwmbpsvnq9p8lkl8709z0d34w"; depends=[alabama DoseFinding lattice]; }; TestsSymmetry = derive2 { name="TestsSymmetry"; version="1.0.0"; sha256="0dbgw14m4nk1x9y186v3ynqrv14z8irr7yyq4087sqmpj6y79sb5"; depends=[e1071 MASS Rcpp rpart]; }; @@ -5746,13 +5854,13 @@ in with self; { ThermIndex = derive2 { name="ThermIndex"; version="0.2.0"; sha256="0s9d55577dq61qixwwfwmqc2k2c8my00j2ng97ng42cw0jc7aylm"; depends=[]; }; ThermalSampleR = derive2 { name="ThermalSampleR"; version="0.1.2"; sha256="1s1hxfssh7d0c4v4phvqpkr4asfrflg84hznz2qgjrn9k0dbkljj"; depends=[cowplot dplyr EnvStats ggplot2 janitor magrittr MASS purrr rlang sn testthat tidyr]; }; Thermimage = derive2 { name="Thermimage"; version="4.1.3"; sha256="1623r64v97ii8qq6cfrg0jrdl7nwxswjgif5l85vak8xjkfwsq7q"; depends=[png tiff]; }; - ThomasJeffersonUniv = derive2 { name="ThomasJeffersonUniv"; version="0.1.0"; sha256="0w2n7jwns82zljkfz509hkkplda5mpbcqk5gzi2y75vlika0rg18"; depends=[lubridate timeDate zoo]; }; - ThreeArmedTrials = derive2 { name="ThreeArmedTrials"; version="1.0-4"; sha256="1czlr94mgs99pzd1a80wqfjhrwrfsk8fvbbr37nwcixs0fw431yw"; depends=[MASS numDeriv]; }; + Thermistor = derive2 { name="Thermistor"; version="1.1.0"; sha256="0jdc5x3pylqbfxyhxhfsfd5lqiqd9qpn08w6svm0w7clbsp54bph"; depends=[ggplot2]; }; + ThomasJeffersonUniv = derive2 { name="ThomasJeffersonUniv"; version="0.1.2"; sha256="1flj8jrkaj7l3a6lq2ir365rfnyd883kbd90lbfal44nsb7y3j43"; depends=[lubridate stringdist survival timeDate writexl zoo]; }; ThreeGroups = derive2 { name="ThreeGroups"; version="0.21"; sha256="0hipxa45v9ysb2qbk33kjycnvqar7bff1ajxd6fzhpc3jc9hflw4"; depends=[]; }; ThreeWay = derive2 { name="ThreeWay"; version="1.1.3"; sha256="17yl8zq029wiy3c0f4ssljx85dnm9n862wj2d24w7p0lxlvarmz6"; depends=[]; }; ThreeWiseMonkeys = derive2 { name="ThreeWiseMonkeys"; version="0.1.0"; sha256="1qdb3m15q0gg8dk2znc2syy2jdqsp2893a7ilfa8rg3r2vps86yg"; depends=[stringr tuneR]; }; - Thresher = derive2 { name="Thresher"; version="1.1.3"; sha256="16zf5cwc2c5j61xcrqsycwrsc162spyqgk9mac7n37mymn5agbwp"; depends=[ade4 ClassDiscovery colorspace MASS movMF oompaBase PCDimension]; }; - ThresholdROC = derive2 { name="ThresholdROC"; version="2.9.3"; sha256="08wz44snvn3q243nzg4hw5casi1x297gc7nzxqyxwk641pa4cy95"; depends=[ks MASS numDeriv pROC]; }; + Thresher = derive2 { name="Thresher"; version="1.1.4"; sha256="01rjm3j1zxx7gc0m8cr5jgcbr6pz11mqxr5sw0bgh6kdc5n0by0n"; depends=[ade4 ClassDiscovery colorspace MASS movMF oompaBase PCDimension]; }; + ThresholdROC = derive2 { name="ThresholdROC"; version="2.9.4"; sha256="1vh4fx8vbk5w6nrgkldnhxbhcdcrdc7sxhvm0gsn1gh7w5cgndq7"; depends=[ks MASS numDeriv pROC]; }; ThresholdROCsurvival = derive2 { name="ThresholdROCsurvival"; version="1.2.1"; sha256="13njr43fb8jnjcy1n32q8rbrgqag9cdcwx4rpx16rx7kvjr23gcw"; depends=[boot InformativeCensoring pROC psych survival ThresholdROC]; }; ThurMod = derive2 { name="ThurMod"; version="1.1.11"; sha256="01ay1w3h300day5aljha93xyk0n8a98c7g5binvchgsa019mg9dd"; depends=[lavaan MASS matrixStats mvtnorm]; }; TiPS = derive2 { name="TiPS"; version="1.2.3"; sha256="061lyai1kjm5glm69wxpnqvgp1xzj8j893pa73x5fl228dqm526f"; depends=[gtools inline Rcpp stringr]; }; @@ -5760,10 +5868,12 @@ in with self; { TideHarmonics = derive2 { name="TideHarmonics"; version="0.1-1"; sha256="1g1v99gh6mns4l8ipmw7kpalbk07m92ybcqjq7b0wsjmdvs1y67s"; depends=[]; }; TideTables = derive2 { name="TideTables"; version="0.0.3"; sha256="0xfwikz9f58pw1j5vp45wp44lbr8b8ijlac474nzahq46d411afp"; depends=[chron data_table]; }; Tides = derive2 { name="Tides"; version="2.1"; sha256="0da3z010ali83qf8mf1znicqv8vvsa5r93mc40ax60ln2w33nlrm"; depends=[]; }; - TidyDensity = derive2 { name="TidyDensity"; version="1.3.0"; sha256="1pxl4x5d4vg0y7dq0b39f4kng0x3yqdh9la7cav7ic1hijyrv6w3"; depends=[actuar broom data_table dplyr ggplot2 magrittr nloptr patchwork plotly purrr rlang survival tidyr tidyselect]; }; + TidyConsultant = derive2 { name="TidyConsultant"; version="0.1.1"; sha256="00gw5h3n04nnrkrqx981rksi4liydmljj4nnnjnnh2a7ra98pcln"; depends=[autostats badger Ckmeans_1d_dp framecleaner pacman presenter tidybins validata]; }; + TidyDensity = derive2 { name="TidyDensity"; version="1.5.0"; sha256="1ncs8c0gwb54snn9xbndgjc9cgqf8hgqmr5ki2bsxad0vqgjl9vq"; depends=[actuar broom data_table dplyr ggplot2 magrittr nloptr patchwork plotly purrr rlang stringr survival tidyr tidyselect]; }; TidyMultiqc = derive2 { name="TidyMultiqc"; version="1.0.3"; sha256="1gnkq2ssc9lvkz1j52c2l4v1frxfcnw3j186kf3xbx8qx1aikyqr"; depends=[assertthat dplyr jsonlite magrittr purrr rlang stringr tibble]; }; TimeVTree = derive2 { name="TimeVTree"; version="0.3.1"; sha256="124kg9zcq4b2j4qvg9f6gykbmzf69qjnnw54nv213ip2h4rdkv32"; depends=[survival]; }; TimeVarConcurrentModel = derive2 { name="TimeVarConcurrentModel"; version="1.0"; sha256="0fq05yni8hasivwmv5dk5ivwkprh4fkaa7h1bv8b60savvh0zs23"; depends=[Bolstad2 fda]; }; + TimeVizPro = derive2 { name="TimeVizPro"; version="1.0.1"; sha256="1yknbwbqmqvafrgsagmqnmfms1xdsl3r73d71d301nnadfs0p6qc"; depends=[countrycode dplyr ggiraph ggplot2 shiny sparkline]; }; Tinflex = derive2 { name="Tinflex"; version="2.4"; sha256="1rrxlbv6xsnqr2zcadcr9g2p64zgkih89997inx0azl7v788sm9i"; depends=[]; }; TipDatingBeast = derive2 { name="TipDatingBeast"; version="1.1-0"; sha256="07lw6jnr76qrxwrwv90hi5ih2xf6g4sz4hfapk5vf1y3ayfskkl0"; depends=[DescTools mclust TeachingDemos]; }; Tlasso = derive2 { name="Tlasso"; version="1.0.2"; sha256="1svjl2va3vpa1m13wmyy3bpx76xxivalwprzbaavwxf8lgk34wgr"; depends=[expm huge igraph rTensor]; }; @@ -5771,6 +5881,7 @@ in with self; { Tmisc = derive2 { name="Tmisc"; version="1.0.1"; sha256="0j2cr51mrbxpmk70dz99d7h2y2y649zaql6262v7nzvqyc6m1h47"; depends=[dplyr magrittr rstudioapi tibble]; }; TooManyCellsR = derive2 { name="TooManyCellsR"; version="0.1.1.0"; sha256="0cypjf4a9q2kw4gwxlr59nbwn25wrrhrcmpksxi2yhd3qhk71q8n"; depends=[cowplot ggplot2 imager jsonlite Matrix]; }; ToolsForCoDa = derive2 { name="ToolsForCoDa"; version="1.0.6"; sha256="1c37xv8h4jycnn9cnxlvby3p8hl3gfp4bdsbxm06bb323qj774pd"; depends=[calibrate HardyWeinberg MASS]; }; + Toothnroll = derive2 { name="Toothnroll"; version="1.11"; sha256="1xd6p1yxfp6x48cg81r8bgd8v19rpymbsnlzczylkzh6w7khaafl"; depends=[alphashape3d Arothron colorRamps compositions DescTools geometry lattice mgcv Morpho morphomap oce rgl Rvcg stringr vegan]; }; TopDom = derive2 { name="TopDom"; version="0.10.1"; sha256="1rryfnwvdlpdrjgs6sciy91cxfp4jykll0swclasydjvj4n642i6"; depends=[ggplot2 matrixStats reshape2 tibble]; }; TopKLists = derive2 { name="TopKLists"; version="1.0.8"; sha256="1l2fshf4w2ykhxb1bhrblcknxppy4l4w5w0pm16zcvkhrsas06cs"; depends=[gplots Hmisc]; }; TopKSignal = derive2 { name="TopKSignal"; version="1.0"; sha256="1767v8njdi736im8fhf9yihrbxjrnyhs7xpmdzphsm55qm8rda1x"; depends=[doParallel foreach ggplot2 Matrix nloptr reshape2]; }; @@ -5779,7 +5890,7 @@ in with self; { TotalCopheneticIndex = derive2 { name="TotalCopheneticIndex"; version="2.0.1"; sha256="0i21g7zzad973802kfp8s638d3g70c4vkrm59i9frb71apvkljk2"; depends=[TreeTools]; }; ToxCrit = derive2 { name="ToxCrit"; version="1.0"; sha256="1jxi10b733k3djfykyqnpcp2fapsmaszsd7lkwcwmwq62v73rhax"; depends=[]; }; Tplyr = derive2 { name="Tplyr"; version="1.2.1"; sha256="092lazly5l2891x7yriii19ifck0rhlwk0ic8n6yjpp2ibwg6dbz"; depends=[assertthat dplyr forcats lifecycle magrittr purrr rlang stringr tibble tidyr tidyselect]; }; - TraMineR = derive2 { name="TraMineR"; version="2.2-9"; sha256="1gn4mpd3hkxxhdlqvpvxj2q4p03g4v1cib8048h8ar27rl5mqpvh"; depends=[boot cluster colorspace RColorBrewer vegan]; }; + TraMineR = derive2 { name="TraMineR"; version="2.2-10"; sha256="19l51vjn4ljyfghsl93amh94zqsvf290ahvb7r4z6kqgdbz8j5lb"; depends=[boot cluster colorspace RColorBrewer vegan]; }; TraMineRextras = derive2 { name="TraMineRextras"; version="0.6.7"; sha256="06kl8xxszwdra3dyapnk76frnz416lbkqfvxc115pnwxlf8ad8v5"; depends=[cluster colorspace doParallel foreach RColorBrewer survival TraMineR]; }; TraceAssist = derive2 { name="TraceAssist"; version="0.1.0"; sha256="03x071nsfgz1z2qp1zn1y3hfx8ydpj0z4rcfk2i588ad53z86w4c"; depends=[glmnet keras Matrix quadprog]; }; TrackReconstruction = derive2 { name="TrackReconstruction"; version="1.3"; sha256="0x2wydp9qj2r2rsv0kmwlq4y7mr391ya13rpnj3mdgl0pjdp445s"; depends=[fields RColorBrewer]; }; @@ -5792,20 +5903,22 @@ in with self; { TransTGGM = derive2 { name="TransTGGM"; version="1.0.0"; sha256="0c815qp0nb4c8ymq9gm9yr37vkzlb6fja9j0czl6ww7rvr8fplrn"; depends=[doParallel expm glasso MASS Matrix rTensor Tlasso]; }; Transform = derive2 { name="Transform"; version="1.0"; sha256="0dynxrmpyji2dn42l4s87waz7m77ci0h7rnsc3zm6a3ya9gxgdfv"; depends=[]; }; Tratamentos_ad = derive2 { name="Tratamentos.ad"; version="0.2.4"; sha256="15xba5g5b9rxpndgmhlnnq35xjic9v7ymgpyaaj6fn0kziphip84"; depends=[crayon]; }; - TreatmentPatterns = derive2 { name="TreatmentPatterns"; version="2.6.5"; sha256="0prsf1qhdvh524sdw396d2dflg8nm9kf6g0i8nczd0kjzd5jf95m"; depends=[Andromeda checkmate dplyr htmlwidgets networkD3 R6 shiny shinydashboard stringr sunburstR tidyr]; }; + TreatmentPatterns = derive2 { name="TreatmentPatterns"; version="2.6.7"; sha256="1s6rvsqa4q6nr9vlfmcysn58qw88df05fp638y8yxc791bw120gm"; depends=[Andromeda checkmate dplyr htmlwidgets networkD3 R6 shiny shinydashboard stringr sunburstR tidyr]; }; TreatmentSelection = derive2 { name="TreatmentSelection"; version="2.1.1"; sha256="1pw64hx697jg2f1r2zd8y98g3ivj2gm8fnixcjfn4drsd0xixb4p"; depends=[binom ggplot2 survival]; }; TreeBUGS = derive2 { name="TreeBUGS"; version="1.5.0"; sha256="0nxv2hh7flmyfm2pap97hwjyz29hfzybfv3b1v0ygqffgmh1j7mb"; depends=[coda hypergeo logspline MASS Rcpp RcppArmadillo rjags runjags]; }; TreeDep = derive2 { name="TreeDep"; version="0.1.3"; sha256="0ja2hp9sxzybac6dqdsns5q1rj12swl240znsnsffg9mkvzhq6rl"; depends=[ggplot2 lubridate]; }; TreeDiagram = derive2 { name="TreeDiagram"; version="0.1.1"; sha256="03kn9h37wgx300szzxmg21zc5iz3a9v8f2ydzv6dv6rhpa7yn0v5"; depends=[ape cowplot ggplot2 stringr tree]; }; TreeDimensionTest = derive2 { name="TreeDimensionTest"; version="0.0.2"; sha256="1bwvspjvc1cragbsrc05vhwk0zmfj36r9piqbj0vgahpjb4cswn9"; depends=[fitdistrplus igraph mlpack nFactors RColorBrewer Rcpp Rdpack]; }; TreeDist = derive2 { name="TreeDist"; version="2.7.0"; sha256="1x92z0ipk3rk94hxc3al76y51pzha2csry3vrflll7sgshkbr5rj"; depends=[ape cli colorspace memoise phangorn Rcpp Rdpack shiny shinyjs TreeTools]; }; - TreeMineR = derive2 { name="TreeMineR"; version="1.0.0"; sha256="1ngadly2535n8h02lv8zkmhy3adfs7bklxd2b0d24cl9c5c5gh3v"; depends=[cli data_table future future_apply]; }; - TreeSearch = derive2 { name="TreeSearch"; version="1.4.0"; sha256="1nhy1bq4pkbj0c09750hzjnzgqv5k1042fjra9dw4yk24rk1dyi7"; depends=[ape cli cluster fastmatch fs future PlotTools promises protoclust Rcpp Rdpack Rogue shiny shinyjs TreeDist TreeTools]; }; + TreeMineR = derive2 { name="TreeMineR"; version="1.0.1"; sha256="04rd7yrp69lz2qavfhdvbcwd0jy2qpng2xcgmbn69wp6yrm79r6y"; depends=[cli data_table future future_apply]; }; + TreeRingShape = derive2 { name="TreeRingShape"; version="3.0.3"; sha256="0vk58ngvx362070nzg06g2130xlz4crcpmfxgxvjvr4w3pc7iqxi"; depends=[sf]; }; + TreeSearch = derive2 { name="TreeSearch"; version="1.5.1"; sha256="0nxzjv4q052nsfrib3i95b92alxipds5bll1aldh88dabhn3c0v5"; depends=[ape cli cluster fastmatch fs future PlotTools promises protoclust Rcpp Rdpack Rogue shiny shinyjs TreeDist TreeTools]; }; TreeSim = derive2 { name="TreeSim"; version="2.4"; sha256="0nmzx2723n1f5lr951zz2ih2gnpfim5qzihlayhpf181z1qijv93"; depends=[ape geiger]; }; TreeSimGM = derive2 { name="TreeSimGM"; version="2.5"; sha256="125c9rim272h0dfyygmmijz8dcnch3g9wy1ngki77dyrmdl77yfx"; depends=[ape TreeSim]; }; - TreeTools = derive2 { name="TreeTools"; version="1.10.0"; sha256="1ghp8dsr3y1xsbg53fw94xmwyxylcqd5jxijfi5hxis9mskc985j"; depends=[ape bit64 colorspace fastmatch lifecycle PlotTools R_cache Rcpp RCurl Rdpack]; }; + TreeTools = derive2 { name="TreeTools"; version="1.11.1"; sha256="067cxg655bkbcp5ngj3r1i6hs49j8ql1dh1dafzv3gjalx735iav"; depends=[ape bit64 colorspace fastmatch lifecycle PlotTools R_cache Rcpp RCurl Rdpack]; }; TrenchR = derive2 { name="TrenchR"; version="1.1.1"; sha256="0724dgm9yl906lk2vxffd465gy9kv7fdb0yymbnbq9flwxr4nfig"; depends=[deSolve msm Rdpack zoo]; }; TrendInTrend = derive2 { name="TrendInTrend"; version="1.1.3"; sha256="0ijkijyhxhjc7202qssa9wnrmwgv4miv5n8jbml4qqj80kcsbdwp"; depends=[nleqslv pracma pROC rms]; }; + TrendLSW = derive2 { name="TrendLSW"; version="1.0.2"; sha256="0zsl42j0yyc5llk8f0saxnpfxnm8y5n0rwhvmh3xzw21z5rln704"; depends=[locits wavethresh]; }; TrendSLR = derive2 { name="TrendSLR"; version="1.0"; sha256="1x8j2dg3m7b22gva33y4s318a41wl60sz93y868z4j65hp13jb5k"; depends=[changepoint forecast imputeTS plyr Rssa tseries zoo]; }; TrendTM = derive2 { name="TrendTM"; version="2.0.19"; sha256="00m8ahzfldvncn9p35f7qya890chqwizal02748nlfk4wfxjbgw7"; depends=[capushe fda softImpute]; }; Trendtwosub = derive2 { name="Trendtwosub"; version="0.0.2"; sha256="12ibxxq58h9w7hlrsxwdirh02casj495rxbfknaggwfx3w30nm56"; depends=[magrittr usethis]; }; @@ -5825,7 +5938,7 @@ in with self; { TruncExpFam = derive2 { name="TruncExpFam"; version="1.1.1"; sha256="0y5vlfv5q1fphamwr3as14hc1rvz3f15x7vl0kimmmkk0pvpdxya"; depends=[invgamma rmutil]; }; TruncatedNormal = derive2 { name="TruncatedNormal"; version="2.2.2"; sha256="05cfn7mdq0hgw97bbb227in9ccjz727sp67xpnpx2r1ajvl6gxdf"; depends=[alabama nleqslv randtoolbox Rcpp RcppArmadillo]; }; TukeyC = derive2 { name="TukeyC"; version="1.3-42"; sha256="1mzygb3yna1qnk0n8rvwnm32kfrjd2fqwpc4kdwadw1sl6xvp44b"; depends=[doBy xtable]; }; - TukeyGH77 = derive2 { name="TukeyGH77"; version="0.1.1"; sha256="08d2i3wx7xyc1a6wszilicdzjyr9h912544b994famv9m8s1w808"; depends=[rstpm2]; }; + TukeyGH77 = derive2 { name="TukeyGH77"; version="0.1.2"; sha256="0mlq79km9m1ssa876fh93n2462i8bpwgcdxhx7j3rqhnx4q3y32q"; depends=[rstpm2]; }; TukeyRegion = derive2 { name="TukeyRegion"; version="0.1.6.3"; sha256="02w84bha6niyval71a06ibk42crvv2259302ckdzmb61ik9sg44d"; depends=[bfp BH ddalpha MASS Rcpp rgl Rglpk]; }; TunePareto = derive2 { name="TunePareto"; version="2.5.3"; sha256="097rawf1mjam6gbh7ng0x8hcjv18zp9h0hvm62r6nfzyfzlakf7g"; depends=[]; }; TurtleGraphics = derive2 { name="TurtleGraphics"; version="1.0-8"; sha256="0h77pj7rs3lrqi1y2dm1cbrmj13mjpq6y5nw8bcq0s2kbnkfw67l"; depends=[]; }; @@ -5836,24 +5949,22 @@ in with self; { TwoPhaseInd = derive2 { name="TwoPhaseInd"; version="1.1.2"; sha256="1ifdj17rlr8nd0pqpcqi6835ymdhngif279i27s6lvwha924l81c"; depends=[survival]; }; TwoSampleTest_HD = derive2 { name="TwoSampleTest.HD"; version="1.2"; sha256="1mvrlvcdllk7mxfsmahgb3iq7ndlnc4xg1536c1mxphxlh5qxwp0"; depends=[]; }; TwoStepCLogit = derive2 { name="TwoStepCLogit"; version="1.2.5"; sha256="050y7na91izg36gkwd8yn8rx3r39dk6qlvhd3137f3jnk4v00bck"; depends=[survival]; }; - TwoWayFEWeights = derive2 { name="TwoWayFEWeights"; version="2.0.0"; sha256="1k674q11wvmqa1rpnxzrqhjq73pjl2fbi858ifwvd90dlvp530vp"; depends=[cli dplyr fixest haven magrittr rlang]; }; - UBCRM = derive2 { name="UBCRM"; version="1.0.2"; sha256="0cfdgarlks0hkx4fnlm0i2fwpl057vxq58n3xfv718w3cs2nx9wc"; depends=[]; }; + TwoWayFEWeights = derive2 { name="TwoWayFEWeights"; version="2.0.3"; sha256="0glwykcbnp65nc345b6k8dc74dvn7bghr045mvqk3jqmmrha0pd8"; depends=[cli dplyr fixest haven magrittr rlang]; }; + UBCRM = derive2 { name="UBCRM"; version="1.0.3"; sha256="0sbw0kvviczpccv3nq2n1nkj61hng178px4381zkaf1yrv44x9l6"; depends=[]; }; UBL = derive2 { name="UBL"; version="0.0.9"; sha256="1jpm41la5210a9shak01fsgq2yw8l1cz5zbb5zlas2nc2jg7hslh"; depends=[automap gstat MBA randomForest sp]; }; UBayFS = derive2 { name="UBayFS"; version="1.0"; sha256="1aj627f8w30wfnf313adza85jffnp1yq34ri8cfaz5v0jzs1bfib"; depends=[DirichletReg GA ggplot2 gridExtra hyper2 matrixStats mRMRe Rdimtools shiny]; }; UCR_ColumnNames = derive2 { name="UCR.ColumnNames"; version="0.1.0"; sha256="1nwwq93f60r9aik51l7mzckg81f81nz5kgzynyzp5sm4y2wmpzwn"; depends=[]; }; - UCSCXenaShiny = derive2 { name="UCSCXenaShiny"; version="2.0.0"; sha256="121nkc9lxaf3hb15wb3aafwh4m3h4iynv68jqgdfi41mayb7k6dy"; depends=[digest dplyr ezcox forcats ggplot2 ggpubr httr magrittr ppcor psych purrr shiny stringr tibble tidyr UCSCXenaTools]; }; + UCSCXenaShiny = derive2 { name="UCSCXenaShiny"; version="2.1.0"; sha256="080a3p3cb818hns7f72c411bh13clfn3b6xl7wlx41z69swphb5m"; depends=[digest dplyr ezcox forcats ggplot2 ggpubr httr magrittr ppcor psych purrr rlang shiny stringr tibble tidyr UCSCXenaTools]; }; UCSCXenaTools = derive2 { name="UCSCXenaTools"; version="1.4.8"; sha256="0w0rps6jsiw67k6h8j1g0nqzwwhl1kb2by90xd4w61i71vk0fda7"; depends=[digest dplyr httr jsonlite magrittr readr rlang]; }; UComp = derive2 { name="UComp"; version="4.0.2"; sha256="0k89palrdifgrz45ar3dcnrwpxwb01nqsg9k1qkwrilhyj9c254k"; depends=[ggforce ggplot2 gridExtra Rcpp RcppArmadillo tsibble tsoutliers]; }; UHM = derive2 { name="UHM"; version="0.3.0"; sha256="0gl98v7cya740vldimx3ygjqqi3ld1wlpm48hcbylgmvb97745k1"; depends=[jagsUI numbers]; }; UKB_COVID19 = derive2 { name="UKB.COVID19"; version="0.1.4"; sha256="0f684nkyrk9dl7hz9mzbb3x8gza5prd8zrg8ajfyjiqif7c6hkbg"; depends=[data_table dplyr here magrittr questionr tidyverse]; }; - UKFE = derive2 { name="UKFE"; version="0.3.4"; sha256="0na87vw94br6pkh9cj75m71hc6qa26k19flcbq2cd3g8ll9bpx6x"; depends=[xml2]; }; + UKFE = derive2 { name="UKFE"; version="0.3.5"; sha256="0z7jqxp34005m3331crhkqgwgh9fg2p57jnj7kxp0r5bda5vdvzd"; depends=[xml2]; }; UKgrid = derive2 { name="UKgrid"; version="0.1.3"; sha256="1x44iry2j5qbvd8ac9rv9dmg60hbhry2v4jj9hmm49bx10iwl9h2"; depends=[data_table dplyr lubridate magrittr tsibble xts zoo]; }; - UNCLES = derive2 { name="UNCLES"; version="2.0"; sha256="0c61sm09dh0yfrjrjjnizg7qrf8xgc1zdldwhjh64kq8k8g5wa69"; depends=[class kohonen pdist]; }; UNCOVER = derive2 { name="UNCOVER"; version="1.1.0"; sha256="0x5ggwnzca6wz3ikpsa3aq8b715w8drkpchqp3jsg0g9imiw5y3m"; depends=[cachem crayon GGally ggnewscale ggplot2 ggpubr igraph memoise mvnfast scales]; }; UNPaC = derive2 { name="UNPaC"; version="1.1.1"; sha256="1dqli7fanh0gk2bfbcykrrswyjrl9g4rbplxjxgjri7kkmf03cd0"; depends=[huge PDSCE]; }; UPCM = derive2 { name="UPCM"; version="0.0-3"; sha256="1apah04qdgvxxf6q6xr53716pcrmds86sn8f7ykxj93ggg8k0bvl"; depends=[cubature ltm mvtnorm numDeriv Rcpp RcppArmadillo statmod]; }; UPG = derive2 { name="UPG"; version="0.3.4"; sha256="0yyyyjxrw9833w0iwnp2c3y853h8c5kj8rbkalg5rsmxk5m0fjgn"; depends=[coda ggplot2 knitr matrixStats mnormt pgdraw reshape2 truncnorm]; }; - UPMASK = derive2 { name="UPMASK"; version="1.2"; sha256="160rsb0nbndf61khcs3s8xv9nj7ln8zl6l11157ywdcjqd2q5qnq"; depends=[DBI dimRed loe MASS RSQLite]; }; UPSvarApprox = derive2 { name="UPSvarApprox"; version="0.1.4"; sha256="14hj8yv366qix30x7hq1sfzrcrsx4ckfa010azi1ihzp307hfkbz"; depends=[]; }; URooTab = derive2 { name="URooTab"; version="0.1.0"; sha256="0455ssqi0byi6absaxh5xvvyw9isn2fw3rjvyhmd7h9r5w3a1yd6"; depends=[EviewsR knitr magrittr xts zoo]; }; USA_state_boundaries = derive2 { name="USA.state.boundaries"; version="1.0.1"; sha256="0pdqnfpijs9n1vxkngs3mm5q9dwqfmlkm60jq8isxcd9fiadsig6"; depends=[]; }; @@ -5865,9 +5976,10 @@ in with self; { UWHAM = derive2 { name="UWHAM"; version="1.1"; sha256="162manvbmlvf8pqhcda9wx17nrdcwscb88ny2r7cvag3j04yxl54"; depends=[trust]; }; UdderQuarterInfectionData = derive2 { name="UdderQuarterInfectionData"; version="1.0.0"; sha256="084bq5ai1ccp4www64z0ipic74zkd8j1ygv0py900164a25wdr9b"; depends=[]; }; Ultimixt = derive2 { name="Ultimixt"; version="2.1"; sha256="0fh2qpm7qpv1170jzbmzqhvwsn69lblizzisgasswy2nix2jjz4y"; depends=[coda gtools]; }; - Umatrix = derive2 { name="Umatrix"; version="3.4.1"; sha256="1nvc7zg28rwhwminn6hygvdmy0ghaivmqgn53mfdgq39mbf3xi2w"; depends=[abind AdaptGauss DataVisualizations deldir fields geometry ggplot2 pdist plyr png Rcpp reshape2 shiny shinyjs]; }; + Umatrix = derive2 { name="Umatrix"; version="4.0"; sha256="0mpn61hiqx5ql23qwi299ifmpgcyx2px1hj70kq1ybqwxi9kyc1w"; depends=[abind AdaptGauss DataVisualizations deldir fields geometry ggplot2 pdist plyr png Rcpp reshape2 shiny shinyjs]; }; Umoments = derive2 { name="Umoments"; version="0.1.1"; sha256="089d0xmsp0419mxjp6fs0s1palvdkr0i5dzqckcn6r2kjqj7izjg"; depends=[]; }; Umpire = derive2 { name="Umpire"; version="2.0.10"; sha256="1bhz1yfvpszqz4nal2wwjgllbq0hj6y0jf2bja3nfb7amj2m10gg"; depends=[BimodalIndex mc2d]; }; + UnalR = derive2 { name="UnalR"; version="1.0.0"; sha256="1zw68ss0jlyg9mm5qy0k7dqbag8qz08yc96kfmib028d72jsh41d"; depends=[cli d3r data_tree dplyr DT dygraphs echarts4r fmsb forcats ggplot2 ggrepel ggspatial gridSVG gt gtExtras highcharter htmltools htmlwidgets jsonlite leaflet leaflet_extras lifecycle magrittr maps plotly png rlang scales sf sp stringr sunburstR tidyr treemap webshot XML xts zoo]; }; UncDecomp = derive2 { name="UncDecomp"; version="1.0.1"; sha256="1m44pgk7nffay09m4gkwb0khq0qjd7bq1p72blsmib46wmnwqfsa"; depends=[dplyr ggplot2]; }; UniExactFunTest = derive2 { name="UniExactFunTest"; version="1.0.0"; sha256="03gnn36m735kycac526qrz5rkjhqcw9dp77x71z6qryy7i718qwv"; depends=[Rcpp]; }; UniIsoRegression = derive2 { name="UniIsoRegression"; version="0.0-0"; sha256="0lmrmb9sbk41ak7sbcrzhfnijb1skgb4lqg9m9imc98lcp69h7z0"; depends=[Rcpp]; }; @@ -5878,7 +5990,8 @@ in with self; { UnitCircle = derive2 { name="UnitCircle"; version="0.1.3"; sha256="0z5ssps8l5ka4aw4984qml15scw4pfssara5dls82afhfhpkszsr"; depends=[]; }; UnitStat = derive2 { name="UnitStat"; version="1.1.0"; sha256="185ivm4kg6hzqx3srk1shvpd5vlc0akn1sbg3wqcdsk2i2x6vhhm"; depends=[lmtest]; }; UnivRNG = derive2 { name="UnivRNG"; version="1.2.3"; sha256="14z2yqv14sv16ycf7jf2kkp8pqn12d9lq4l568vmdm10qrl5x39d"; depends=[]; }; - UniversalCVI = derive2 { name="UniversalCVI"; version="1.1.1"; sha256="1z800hpbbbkrbsxrbimkj4aaff5lfvxc8fp8ds17r3g7hi9z565g"; depends=[e1071 mclust]; }; + UniversalCVI = derive2 { name="UniversalCVI"; version="1.1.2"; sha256="0q8sgphhv07cv6ljgvkr41a8p12gksxs1klcly3sd3g906b8rbcv"; depends=[e1071 mclust]; }; + UpAndDownPlots = derive2 { name="UpAndDownPlots"; version="0.5.0"; sha256="0q19a64dy0g89yyxgs88vpcisc9apji3cl7b7gdm778y6j59jnjq"; depends=[dplyr forcats ggplot2 ggthemes gridExtra tidyr tidyverse]; }; UpDown = derive2 { name="UpDown"; version="1.2.1"; sha256="0c1mi43mkadhpalrd3wlp94ri1sp9ii5wcn44pgz35ki7nngrnaj"; depends=[dplyr ggplot2 mclust mixtools reshape2 shiny]; }; UpSetR = derive2 { name="UpSetR"; version="1.4.0"; sha256="007i0njnjjy7vbrxabwav7a1kk2n0hn2mkvqsdzzfk10ckp5y7im"; depends=[ggplot2 gridExtra plyr scales]; }; UpSetVP = derive2 { name="UpSetVP"; version="1.0.0"; sha256="1v6djfwaix978vzfjnj0vd3r0m3svfqkn9aqnf9qz2xsjk43m9zr"; depends=[ggplot2 patchwork rdacca_hp]; }; @@ -5890,13 +6003,15 @@ in with self; { VALIDICLUST = derive2 { name="VALIDICLUST"; version="0.1.0"; sha256="1glcvzrbc7glxmbmas3zzb114a5cfl7gsf7xlxaifrrgvcahrvnx"; depends=[diptest dplyr]; }; VAM = derive2 { name="VAM"; version="1.1.0"; sha256="1nl4kzp3j424cy6m5p8n9lf742vls2aw60ywy6dig4963nl4jdkh"; depends=[MASS Matrix]; }; VAR_etp = derive2 { name="VAR.etp"; version="1.1"; sha256="03zybsn28r6jz8rshmifgqavx4kmfvj92wbqjf5fvfj4fypis8kx"; depends=[]; }; - VARDetect = derive2 { name="VARDetect"; version="0.1.6"; sha256="1yrlyg4b53bdmfjcqi07l0gr3f01h8jwj6g6av3plyk96cvl4svb"; depends=[igraph lattice MTS mvtnorm pracma Rcpp RcppArmadillo sparsevar]; }; + VAR_spec = derive2 { name="VAR.spec"; version="1.0"; sha256="0sz4r4c9zzz1p77v7vcsl8w5gldy9mlipf64fjiwdrddgwrv4rwd"; depends=[]; }; + VARDetect = derive2 { name="VARDetect"; version="0.1.8"; sha256="1g28rcmlm16yiz156rmdslvhy173pazij0lw7b5gxqv3dgl4mcd0"; depends=[igraph lattice MTS mvtnorm pracma Rcpp RcppArmadillo sparsevar]; }; VARSELECTEXPOSURE = derive2 { name="VARSELECTEXPOSURE"; version="1.0.3"; sha256="0hfcy00zynrg2vfqym17zfs3ggm4wvsvjf2qib4pbd53qfhzabwa"; depends=[Rcpp RcppArmadillo]; }; VARshrink = derive2 { name="VARshrink"; version="0.3.1"; sha256="09hysmxxawcbyfx6bia546aqydryl2r5p3ai7bvl6ghdckw5mnpl"; depends=[ars corpcor MASS mvtnorm strucchange vars]; }; VBJM = derive2 { name="VBJM"; version="0.1.0"; sha256="0g7mmjba8pyfz92p7fgp9shpm9pclymacm45y3h6hlmsbpc7sh3p"; depends=[Matrix pracma Rcpp RcppArmadillo RcppEnsmallen statmod survival]; }; VBLPCM = derive2 { name="VBLPCM"; version="2.4.9"; sha256="13qwqpnhdxd5lriz5p4w1dcng7msxbm4z2lfj93w7wcwidl93jw9"; depends=[ergm mclust network sna]; }; VBTree = derive2 { name="VBTree"; version="0.1.1"; sha256="052d4vykm87z3d9rmh8bfx7qkcyx6gkrnsyb79ag1z9lb0gpky17"; depends=[tensorA]; }; VBV = derive2 { name="VBV"; version="0.6.2"; sha256="1nrdcvkdv38xl67qi9igcp3l5j4hckiyg3klg7z0rfj6zzpszm71"; depends=[]; }; + VBel = derive2 { name="VBel"; version="1.0.1"; sha256="02371k5mvzqkj0x9sbbg3ah6kzrcr16bwm1qrci7nh06qy1hq3hg"; depends=[Rcpp RcppEigen]; }; VBsparsePCA = derive2 { name="VBsparsePCA"; version="0.1.0"; sha256="0h1kzz7rjh4wn4nbq1v3r4f6nrmlh0lscww2vwfz886x1w2c9sys"; depends=[MASS pracma]; }; VC2copula = derive2 { name="VC2copula"; version="0.1.5"; sha256="1kadz36cw12qipf25dqykm58hh775wk3aq793ckphl7y9vqpvl36"; depends=[copula VineCopula]; }; VCA = derive2 { name="VCA"; version="1.5.1"; sha256="0bw951rkbxg6ccy1iqmaamx5fwa41c3pp8zyzk2njkcgi4w5b90m"; depends=[lme4 Matrix numDeriv]; }; @@ -5908,12 +6023,11 @@ in with self; { VEwaningVariant = derive2 { name="VEwaningVariant"; version="1.4"; sha256="1fg44cy2i138b21y610bj64xjwwp96wilngy3rq89vsvkj40rird"; depends=[ggplot2 Rcpp RcppArmadillo survival]; }; VFP = derive2 { name="VFP"; version="1.4.1"; sha256="14idww1vy695mp9v2h0nxqi6flmm41cr30i0yd2nwjsnriwqgzak"; depends=[gnm MASS VCA]; }; VFS = derive2 { name="VFS"; version="1.0.2"; sha256="1b8sl8id2gj4iqkpjzd3giybbix2jvskwsbw1kqj3zqr77hygxwg"; depends=[e1071 nleqslv]; }; - VGAM = derive2 { name="VGAM"; version="1.1-10"; sha256="04yy5rxid3fwn42sak9rjbxd1h4d7iigiznpbrvwxl06b1xficyb"; depends=[]; }; + VGAM = derive2 { name="VGAM"; version="1.1-11"; sha256="199kicvlxciff9x243h357n4bjl00yg9k5jgs9awzz5wsadr17fy"; depends=[]; }; VGAMdata = derive2 { name="VGAMdata"; version="1.1-9"; sha256="1bk4c22rwpcm5aa1kdg0dh8c87pb54639xhlh4dkxwx2idn6s9b5"; depends=[VGAM]; }; VGAMextra = derive2 { name="VGAMextra"; version="0.0-6"; sha256="061mlhiqdncgjzyflpjjhmssjp7z33k9xrz7dmcgsrw37fb97jrs"; depends=[VGAM]; }; - VHDClassification = derive2 { name="VHDClassification"; version="0.3"; sha256="1ij4h3gzxb9mm9q743kc3sg2q609mnqz6mhlrbim1wcjji2b7bv4"; depends=[e1071 lattice]; }; VIC5 = derive2 { name="VIC5"; version="0.2.6"; sha256="1zkvzkras94gyc43b9j4bq4mpyg9l1idx2pdd8a728gmq1daky0k"; depends=[foreach lubridate Rcpp RcppArmadillo]; }; - VIGoR = derive2 { name="VIGoR"; version="1.1.2"; sha256="0ikyfla1c4x6plm05pihaas6qz43dip20i75c4cwk1lq7fqayq92"; depends=[]; }; + VIGoR = derive2 { name="VIGoR"; version="1.1.4"; sha256="02s2xpx37aszny89pp22p5rkdf35xsbzn67rgsdxp531rswhzvcw"; depends=[]; }; VIM = derive2 { name="VIM"; version="6.2.2"; sha256="1r0myxcx8y1a3fkf9ssk882f09snn2j6zilsygpld32hahn4k9xg"; depends=[car colorspace data_table e1071 laeken magrittr MASS nnet ranger Rcpp robustbase sp vcd]; }; VIMPS = derive2 { name="VIMPS"; version="1.0"; sha256="13r8g9k216fjsnw4ymqdsrx08z6rr2i3cwafrv1j93lgl0d3lnj4"; depends=[caret ggplot2 knockoff ranger ROCR]; }; VIMean = derive2 { name="VIMean"; version="0.1.0"; sha256="0kxrcigp94h2j1vx5pj24sp73iqxldc1ygm5bak4jrld66r0nb5b"; depends=[]; }; @@ -5921,7 +6035,7 @@ in with self; { VLF = derive2 { name="VLF"; version="1.1"; sha256="096a7nx60qm4b7fil4s3r4mlp8fq60v0lq893jh3ij6gm63mfcim"; depends=[]; }; VLMC = derive2 { name="VLMC"; version="1.4-3-1"; sha256="0cwfpxcj8g68j9z9fl66i0amj8ypf199iv3yyxzsmniqv4w5x4ar"; depends=[MASS]; }; VLMCX = derive2 { name="VLMCX"; version="1.0"; sha256="1kwwg158556v4685j2dji4xjf1v9v5d9qdp4xhki022f5dv8h61h"; depends=[berryFunctions nnet]; }; - VLTimeCausality = derive2 { name="VLTimeCausality"; version="0.1.4"; sha256="09fpjskdc3bz1qjqvcivk873jyl0mcjm4zds2xa6bd82ka8rb4b8"; depends=[dtw ggplot2 RTransferEntropy tseries]; }; + VLTimeCausality = derive2 { name="VLTimeCausality"; version="0.1.5"; sha256="0pfgpl9xkwi0v0z1l58gb8s4gzz7r4k38270x8ifyk41l5vq8iwd"; depends=[dtw ggplot2 RTransferEntropy tseries]; }; VMDML = derive2 { name="VMDML"; version="0.1.1"; sha256="12n32wx3hcvw55rrcwkv501cjl4zrpgh4d7y4m1irgrpjfqk77x2"; depends=[e1071 forecast nnfor randomForest VMDecomp]; }; VMDecomp = derive2 { name="VMDecomp"; version="1.0.1"; sha256="0iq2lj7n77qmryf95cjl2y869bhy6i0mx44qls7xc07g0qplwqx3"; depends=[data_table glue Rcpp RcppArmadillo]; }; VOSONDash = derive2 { name="VOSONDash"; version="0.5.7"; sha256="1qivx5ddl9jsn6q6ic2w8jrczxlx23z087k5arfz2rixgj7rndyg"; depends=[data_table httpuv httr igraph lattice magrittr RColorBrewer shiny SnowballC systemfonts syuzhet textutils tm vosonSML wordcloud]; }; @@ -5932,7 +6046,7 @@ in with self; { VUROCS = derive2 { name="VUROCS"; version="1.0"; sha256="1r4hq7az50v7lbyx5w6b4zs2kwi5cypqn9k6ac4kr8jr3jlyanr3"; depends=[doParallel foreach Rcpp RcppArmadillo]; }; VWPre = derive2 { name="VWPre"; version="1.2.4"; sha256="1hhpqxzh9h5dy45r04l1fa1k4a14s0m6z6fhfg22kpwpryszbc44"; depends=[dplyr ggplot2 mgcv rlang shiny tidyr]; }; VaRES = derive2 { name="VaRES"; version="1.0.2"; sha256="0k65ip5q4zgyklvn8mbc1ykz7kpfr5xvz041g1pq88f43g2sgv4b"; depends=[]; }; - VancouvR = derive2 { name="VancouvR"; version="0.1.7"; sha256="12njm15ah307rsncnmckpx05d4cncqj0paa40xdgp7mfz821s36c"; depends=[digest dplyr httr purrr readr rlang sf tibble urltools]; }; + VancouvR = derive2 { name="VancouvR"; version="0.1.8"; sha256="1dc6vcszck1kk4kc910kvvcgzva5f35hcqs69mllws8bs899la58"; depends=[digest dplyr geojsonsf httr purrr readr rlang sf tibble urltools]; }; VarED = derive2 { name="VarED"; version="1.0.0"; sha256="16j9p2a143y4hqclsv1mig0fccrzjx2r0lll0wz8isjp9x1wzjv8"; depends=[]; }; VarRedOpt = derive2 { name="VarRedOpt"; version="0.1.0"; sha256="0h44m8850q4aksrqj11yr2a2qj37w8fhv0plpvdzcl087ifyj0g9"; depends=[]; }; VarReg = derive2 { name="VarReg"; version="2.0"; sha256="06n8bb4h722k1d83hbzgjasl9jrcj7pwj895zdkkdalw7crim88m"; depends=[sn survival]; }; @@ -5945,8 +6059,10 @@ in with self; { VedicDateTime = derive2 { name="VedicDateTime"; version="0.1.9"; sha256="08kkwb5k0n4hjy9rw7bdgpls14a8xdnw3v0g56hhhxnwxf6whmly"; depends=[swephR]; }; VennDiagram = derive2 { name="VennDiagram"; version="1.7.3"; sha256="0ilcxcp8qskmb5cp7fyb7i0qizg42lrx0ny8ws3if90kfrglghp7"; depends=[futile_logger]; }; VertexSimilarity = derive2 { name="VertexSimilarity"; version="0.1"; sha256="0f638y272dbmz5747wxqy9pxasxk3a9f9wf31gf297qx7268ab1m"; depends=[igraph]; }; + VertexWiseR = derive2 { name="VertexWiseR"; version="1.0.0"; sha256="14ria7wf080zszjqml96dm2jb4ppjlcrhckk82x3mpyw7xsmpclh"; depends=[doParallel doSNOW foreach freesurferformats fs gifti igraph reticulate]; }; VeryLargeIntegers = derive2 { name="VeryLargeIntegers"; version="0.2.1"; sha256="1a6hyipn9522zj69amlxmqip45gflml5kcyjlxi4vf4y1givb7qs"; depends=[Rcpp]; }; VetResearchLMM = derive2 { name="VetResearchLMM"; version="1.0.0"; sha256="1a7wm04bsr5shak7l8ypxlhlnx3qkq1jdpjnji1n05p6b00ih9h1"; depends=[ggplot2 lme4 lmerTest multcomp nlme]; }; + ViSe = derive2 { name="ViSe"; version="0.1.2"; sha256="0ki23qgb3xisfiq8fz0xgj6azqmjn1xcm3j87v7qfshs1yq2rk47"; depends=[cowplot dplyr ggplot2 scales shiny tidyr]; }; ViSiElse = derive2 { name="ViSiElse"; version="1.2.2"; sha256="1ay09dahlqnfrgf4gl4s45a4ahrk2xliagxqz5h826w2vzsawqcc"; depends=[chron colorspace ggplot2 Matrix reshape2 stringr]; }; VicmapR = derive2 { name="VicmapR"; version="0.2.3"; sha256="0djv95l32nz6wwslwgn0v037fjbl3fz15vybn39c6g1iw9a2a46s"; depends=[cli curl DBI dbplyr dplyr glue httr kableExtra knitr leaflet lubridate magrittr mapview purrr rlang rvest sf stringr xml2]; }; Vicus = derive2 { name="Vicus"; version="0.99.0"; sha256="1f4vmz34gms0vbvpn94rgdhbbvxbqmjxzhd9n4fxfm0dizmba004"; depends=[Matrix RANN RSpectra]; }; @@ -5954,10 +6070,10 @@ in with self; { VineCopula = derive2 { name="VineCopula"; version="2.5.0"; sha256="0s2v27i5cljvxzh3awpf3bcfbbghch0lphhghqnc7x51w1prxfai"; depends=[ADGofTest lattice MASS mvtnorm]; }; VirtualPop = derive2 { name="VirtualPop"; version="2.0.2"; sha256="1miwljsr6r6i94q9pdpqzhapnfgg3vjv2ikwvc56cpw6k1iw9h39"; depends=[HMDHFDplus msm]; }; VisCollin = derive2 { name="VisCollin"; version="0.1.2"; sha256="1pcd7b14a2qnq1jlk63fascdb8hkys8cg4jw4rx6xk9xmvpvyhlb"; depends=[]; }; - VisitorCounts = derive2 { name="VisitorCounts"; version="1.0.2"; sha256="0qm5qccikwdkdc9pm0gck5id3rjicb07jbds4fbvn3db071bzrdy"; depends=[Rssa]; }; + VisitorCounts = derive2 { name="VisitorCounts"; version="2.0.0"; sha256="1i43g2k3n3c1baxj8q86v33mvvmcg16vv2a46y4ji5nqnqay7183"; depends=[ggplot2 Rssa]; }; VisualDom = derive2 { name="VisualDom"; version="0.8.0"; sha256="14qg44sivfhnvjac5yq4n5llhwq669m3j7a2z84rlz0737x7x5xd"; depends=[plot3D wavemulcor waveslim]; }; Visualize_CRAN_Downloads = derive2 { name="Visualize.CRAN.Downloads"; version="1.0.3"; sha256="1jfj0qp4a6jxw423d6ik18r7gy6zzcxlp71mfhpam256xay0sq8f"; depends=[cranlogs htmlwidgets plotly]; }; - VisualizeSimon2Stage = derive2 { name="VisualizeSimon2Stage"; version="0.1.3"; sha256="19jnh6i0p3irqzj3als5q8basizwmq4viwb5i9iabbhznpi505m5"; depends=[ggplot2]; }; + VisualizeSimon2Stage = derive2 { name="VisualizeSimon2Stage"; version="0.1.5"; sha256="1sjnmxbd3k139rcnwnnjz0js929smdlrrrffn8mhcgrw77zl3ljy"; depends=[ggplot2]; }; VorteksExport = derive2 { name="VorteksExport"; version="0.1.8"; sha256="0r9wmd9bdarjkqmpwp85xz27nbyhjkcpxm8qb8bqjmxq4nds6nxx"; depends=[]; }; Voss = derive2 { name="Voss"; version="0.1.5"; sha256="00f3ljm85z8gr1qyc6nj9g35ywzm78khy8r82wb5ys8fx68n0vwl"; depends=[fields]; }; VoxR = derive2 { name="VoxR"; version="1.0.0"; sha256="16r9ggc5x889g8rjqvp1q2kgf5asjzhykd1ldjy3ny9m48p501ad"; depends=[circular data_table dplyr fastcluster FNN geometry raster Rfast rgl]; }; @@ -5977,8 +6093,8 @@ in with self; { WEGE = derive2 { name="WEGE"; version="0.1.0"; sha256="17g4cgx0ajgj7lgxzi467cjbmbc47skyarcm88vqjc3i1j55dw12"; depends=[raster sf sp]; }; WGCNA = derive2 { name="WGCNA"; version="1.72-5"; sha256="17g7lan1rpy6y4nmqksrf9ddp3gs58vdczfavgq1fp13zx1r2hq3"; depends=[AnnotationDbi doParallel dynamicTreeCut fastcluster foreach GO_db Hmisc impute matrixStats preprocessCore Rcpp survival]; }; WGScan = derive2 { name="WGScan"; version="0.1"; sha256="0jma6di9hbdimswdfm58568vahcjy46hbhb78idjsdz4bl9apvq3"; depends=[data_table MASS Matrix seqminer SKAT]; }; - WH = derive2 { name="WH"; version="1.1.0"; sha256="0zz7936s6yd30q1yxxwbkaczin3r2l189b27nqsfyazbav27hfsb"; depends=[]; }; - WINS = derive2 { name="WINS"; version="1.3.3"; sha256="0chw2v3ba766p8bjh1vzgrx6s7gm586ylvdsal1kmfxv4lkjc8rh"; depends=[copula ggplot2 ggpubr reshape2 stringr survival viridis]; }; + WH = derive2 { name="WH"; version="1.1.1"; sha256="1df2m8m17pv9wn555i7h7nrxmk7cj1znwmgfd78ybjrckijzb61m"; depends=[]; }; + WINS = derive2 { name="WINS"; version="1.4.2"; sha256="02b6y08qhs3w4l58yra6f7yw9pqmlbrmac7qinwwm63s7jl95z9q"; depends=[copula ggplot2 ggpubr reshape2 stringr survival viridis]; }; WLogit = derive2 { name="WLogit"; version="2.1"; sha256="06mhc6n9mszqrj9hi61z5yfyny5aqsvv11a5n7l0wwhpirgi3i8m"; depends=[corpcor cvCovEst genlasso ggplot2 glmnet MASS Matrix tibble]; }; WLreg = derive2 { name="WLreg"; version="1.0.0.1"; sha256="1j9ffilg61a4pxk26rwmpwrigm63lnnd4h0k8ivqk6flxal41jqb"; depends=[inline survival]; }; WMWssp = derive2 { name="WMWssp"; version="0.4.0"; sha256="16m4hvjqdcpkvswvqwgm0pq9nm7vjrlqldzi4i69izlwccp37v47"; depends=[]; }; @@ -5990,8 +6106,7 @@ in with self; { WRSS = derive2 { name="WRSS"; version="3.1"; sha256="0fhmdnkk94m1bqm1i69szv3ycbkzr08xy30mwpqvbij9nh2sqj0w"; depends=[GGally ggplot2 Hmisc network nloptr]; }; WRTDStidal = derive2 { name="WRTDStidal"; version="1.1.4"; sha256="1clv6gd0qlkykllki5jkmhd1znrccyg1mv6w69wz8fj65b2466zd"; depends=[caret dplyr fields foreach forecast ggplot2 gridExtra lubridate purrr quantreg RColorBrewer survival tidyr]; }; WRestimates = derive2 { name="WRestimates"; version="0.1.0"; sha256="03anhcwq9xlzj3zh7kpqm5n6znqiwvkwnd0w1b82my9rk3gp63gw"; depends=[]; }; - WSGeometry = derive2 { name="WSGeometry"; version="1.2.1"; sha256="073cvvbhzx5nllrwfyz6bxvskmkm88i7wq93m2d0q60pzwzsxwzl"; depends=[expm imager lpSolve Matrix plot3D Rcpp RcppArmadillo RSpectra transport]; }; - WVPlots = derive2 { name="WVPlots"; version="1.3.7"; sha256="0zaqy1gii5ry2djqlyjqhiy4pqwng7r7lrpf1bw8g47v9vjjlq33"; depends=[cdata ggplot2 gridExtra mgcv rlang rqdatatable rquery sigr wrapr]; }; + WVPlots = derive2 { name="WVPlots"; version="1.3.8"; sha256="1zvw8mbgxnsj0r67v96fxnpcqbr2m52ffhhvzab0wlryxf7igs84"; depends=[cdata ggplot2 gridExtra mgcv rlang rqdatatable rquery sigr wrapr]; }; WWGbook = derive2 { name="WWGbook"; version="1.0.2"; sha256="05dzgb2b1md981882sp85dvmrsak5v7gwkww1shqfm34zmk9dbkn"; depends=[]; }; WaMaSim = derive2 { name="WaMaSim"; version="1.0.0"; sha256="0sa7qd2bpn3sp06mlpissxxkfhg7j1d07nnwlnz7nyg7pivwnpan"; depends=[magrittr]; }; WallomicsData = derive2 { name="WallomicsData"; version="1.0"; sha256="1bv2v0gjb6v5p7rmm8nc00xnkdw60552siyfhz4y60wm1cygclbq"; depends=[]; }; @@ -6011,6 +6126,7 @@ in with self; { WaveletSVR = derive2 { name="WaveletSVR"; version="0.1.0"; sha256="05sqvqklbz7barf1jfrhd7n4mj60z57sqpikl3lykigl3m9ravhm"; depends=[e1071 forecast fracdiff tsutils wavelets]; }; WaverR = derive2 { name="WaverR"; version="1.0"; sha256="084fhzggzm075w6wp2lqd3j0an21idhw8z5l8ynz4y96mpmn204a"; depends=[kimisc MASS]; }; WaverideR = derive2 { name="WaverideR"; version="0.3.2"; sha256="1lm7xq443vninrph21xq6dikpd42xl9ilwfb22lfba2b7j7j5z6g"; depends=[astrochron biwavelet colorednoise colorRamps DecomposeR DescTools doSNOW fANCOVA foreach Hmisc magick Matrix matrixStats RColorBrewer reshape2 rlist truncnorm viridis WaveletComp]; }; + WayFindR = derive2 { name="WayFindR"; version="0.1.2"; sha256="1j54374vk8y2f28lka03qwz5hyvpb0fyrbfn20pj1hbbnvymsxrm"; depends=[igraph XML]; }; Wcompo = derive2 { name="Wcompo"; version="1.0"; sha256="1rd7y86q8qi7w9878ng0zdk3zpxnjyzpmrm2mj5lm60hkd72xyrw"; depends=[survival]; }; WeMix = derive2 { name="WeMix"; version="4.0.3"; sha256="1ykg7sphnm15a3dlkkhv18ycsclaw363yldfsyc83hf01vlghf77"; depends=[lme4 Matrix matrixStats minqa numDeriv]; }; WebAnalytics = derive2 { name="WebAnalytics"; version="0.9.12"; sha256="031gyndk605841ns33pifhfwlasa39jhrmvigw84iqc2dgxqqpgl"; depends=[brew data_table digest fs ggplot2 reshape2 scales tinytex uaparserjs xtable]; }; @@ -6022,7 +6138,7 @@ in with self; { WeibullR_learnr = derive2 { name="WeibullR.learnr"; version="0.1.1"; sha256="0m3dajyxr6m2w8s1qlwfr1iq2x2s5khs9x1qj4r4fr6zqhp53pbx"; depends=[learnr WeibullR]; }; WeibullR_plotly = derive2 { name="WeibullR.plotly"; version="0.2.0"; sha256="1ymggxqhn2bc6r25vzp4vlr18pcw9vnn24ylwspk8vq8j00pn197"; depends=[plotly WeibullR]; }; WeibullR_shiny = derive2 { name="WeibullR.shiny"; version="0.2.0"; sha256="0qzwn967p54j03h9nmzljx547iqgnyq3xzfri5k0i5lpvxsdp7hs"; depends=[shiny shinydashboard WeibullR WeibullR_plotly]; }; - WeightIt = derive2 { name="WeightIt"; version="1.0.0"; sha256="03rmbvlxgbzraswx3q4saqqknd98chhl0rsc6b3m4k616l84z3ad"; depends=[backports chk cobalt crayon ggplot2 rlang]; }; + WeightIt = derive2 { name="WeightIt"; version="1.1.0"; sha256="00p5ylc0jahb8dqc2z7x5kvx40rlbvrrpfpfhg0dxyrd6qas71w5"; depends=[chk cobalt crayon ggplot2 rlang]; }; WeightSVM = derive2 { name="WeightSVM"; version="1.7-13"; sha256="19dai6v14h644dwa1054kmkhp4p24qvvkpzf45zz942ki24n2day"; depends=[]; }; Weighted_Desc_Stat = derive2 { name="Weighted.Desc.Stat"; version="1.0"; sha256="030i12mnwlj976avvk3grrccgprsckmc35dm2ajwdfc9dijhypnj"; depends=[]; }; WeightedCluster = derive2 { name="WeightedCluster"; version="1.6-4"; sha256="1ayi50wjy7grzapfnyvmbi6rz7amfhdd1nxh56h1s4anv7rf20c4"; depends=[cluster doFuture foreach future nnet progressr RColorBrewer TraMineR]; }; @@ -6033,36 +6149,38 @@ in with self; { WgtEff = derive2 { name="WgtEff"; version="0.1.2"; sha256="1z8pndv43ssgmzldwaq0088lmf1g2mkmrbmzyaismcpngn9fqxsk"; depends=[]; }; WhatIf = derive2 { name="WhatIf"; version="1.5-10"; sha256="19w5qw123iahrx96379lrx8i7v3x2ck5dhklf58iw0dmj4pfy2kg"; depends=[lpSolve pbmcapply]; }; WhatsR = derive2 { name="WhatsR"; version="1.0.4"; sha256="0i6mhc3cm7m885v5sznci7bqr6h2bfgnv466v5jwdwidisnzrhgx"; depends=[anytime checkmate data_table dplyr ggmap ggplot2 ggwordcloud lubridate mgsub qdap qdapRegex ragg readr stringi tokenizers visNetwork]; }; - WhiteStripe = derive2 { name="WhiteStripe"; version="2.4.2"; sha256="1w9shk9qx365pxi2nglvjd26xggylswd83aclg7l45q0dlli3x31"; depends=[mgcv neurobase oro_nifti]; }; + WhiteStripe = derive2 { name="WhiteStripe"; version="2.4.3"; sha256="0r9gjmdilyfj317gr2z00xgz1bjx4802nb522341fw1gklgf7y5i"; depends=[mgcv neurobase oro_nifti]; }; WienR = derive2 { name="WienR"; version="0.3-15"; sha256="00a5d287h78j7ccfarzc2l6i76shw5akzh4ggn6mb183b67nf9k8"; depends=[]; }; WikidataQueryServiceR = derive2 { name="WikidataQueryServiceR"; version="1.0.0"; sha256="1bl1nbhbmss8cj9ni7plsjs996n4rwqv6h8bh1zj4whs8z4fw50f"; depends=[dplyr httr jsonlite purrr ratelimitr readr rex WikipediR]; }; WikidataR = derive2 { name="WikidataR"; version="2.3.3"; sha256="120833b7zyq1rhmn9c8iv0j6br60af7gbn5lc4dil55qhh2lp9rx"; depends=[crayon dplyr Hmisc httr jsonlite pbapply progress readr stringr tibble WikidataQueryServiceR WikipediR]; }; - WikipediR = derive2 { name="WikipediR"; version="1.5.0"; sha256="1w4ggq42vlq7zbrz3v9ripz9yscbd8m8as60q7cplpxn9zqfdl7q"; depends=[httr jsonlite]; }; + WikipediR = derive2 { name="WikipediR"; version="1.7.1"; sha256="08mj3flildcvqdbj5y5c225ipbwfd2ivrjmlcwyg3v84ydhrbrkf"; depends=[httr jsonlite magrittr]; }; WinRatio = derive2 { name="WinRatio"; version="1.0"; sha256="0d064qq9zad9bdacldhicj3xhyrvp0fcqrxfj594yzra2qwgkx90"; depends=[dplyr magrittr Rcpp tidyselect tidyverse]; }; WindCurves = derive2 { name="WindCurves"; version="0.2"; sha256="1vvcp1g5a677g9zqssdkh3zdy646zdkzy75nqhy497bpcgw43q1b"; depends=[readbitmap]; }; WoodSimulatR = derive2 { name="WoodSimulatR"; version="0.6.1"; sha256="170bakkny7k6j22qwal9z2sycils1a7imajzvlzjbrasjy81m2l7"; depends=[dplyr purrr rlang tibble tidyr tidyselect]; }; WoodburyMatrix = derive2 { name="WoodburyMatrix"; version="0.0.3"; sha256="0pmm032lyk31bv30dwz7ajz2ihppp13i1ibpnnc9x9ga3axxhpj7"; depends=[Matrix]; }; + WordListsAnalytics = derive2 { name="WordListsAnalytics"; version="0.2.2"; sha256="1q4plzw4akm7dw59qbwwnd0dxzjiqfbpiqa9h967kvdqdalwkjzz"; depends=[dplyr ggplot2 readr reshape2 shiny]; }; WordOfMouth = derive2 { name="WordOfMouth"; version="1.1.0"; sha256="199hnirbmwarn04ky1147x5c048j087rdml86qcp92kzp20679v3"; depends=[LambertW]; }; WordPools = derive2 { name="WordPools"; version="1.2.0"; sha256="0g3ws2ndl34f8z4nxqij8ifwqs5n3nwn9fjgjqgg1sn5apkc2zcf"; depends=[]; }; WordR = derive2 { name="WordR"; version="0.3.6"; sha256="096b6msnl1rmikx40j7abb9rhw1vayvf9fjq6i8hrjvv38dbaa1d"; depends=[dplyr flextable officer xml2]; }; - WorldFlora = derive2 { name="WorldFlora"; version="1.14-2"; sha256="1ilfc3mr2nl646rlbxn9qzg18kmr083whwrxjvfblxrfjh928r6q"; depends=[]; }; - WorldMapR = derive2 { name="WorldMapR"; version="0.1.0"; sha256="0wanh3i5wk5by55kzs7n3vkk64x1pgvwj70fgbsrxm565711b6vk"; depends=[countrycode dplyr ggplot2 rnaturalearth sf]; }; + WorldFlora = derive2 { name="WorldFlora"; version="1.14-3"; sha256="0vibkgp83ligznkamqzs01j7hq6cqd42x1avcn0bp0zpdf38abcz"; depends=[]; }; + WorldMapR = derive2 { name="WorldMapR"; version="0.1.1"; sha256="01mfwmd99pfbxii3nbzi83jfr7141f5i7mn52jngh3m8i2zksvdr"; depends=[countrycode dplyr ggfx ggplot2 rnaturalearth sf]; }; WormTensor = derive2 { name="WormTensor"; version="0.1.0"; sha256="0l55dbcf65cpw03b26va4ssvk3wc0i6hnchb9jyw44369y5xfniy"; depends=[aricode cluster clusterSim clValid cowplot dtwclust factoextra ggplot2 ggrepel rTensor Rtsne usedist uwot]; }; WpProj = derive2 { name="WpProj"; version="0.2.1"; sha256="17vczldqgqc8wl6yyz06zc3jdkgcxdf2s28bh83vzj98i1521ls2"; depends=[BH doParallel doRNG dplyr foreach ggplot2 ggridges ggsci glmnet lifecycle magrittr Matrix oem quantreg Rcpp RcppCGAL RcppEigen RcppProgress rlang ROI ROI_plugin_ecos ROI_plugin_lpsolve rqPen RSpectra slam]; }; WrensBookshelf = derive2 { name="WrensBookshelf"; version="0.1.0"; sha256="1g83i9qmlidxy55cmvx0sqqrkps9fmvj0sh7jc92v89qwx73pfr0"; depends=[ggplot2]; }; WrightMap = derive2 { name="WrightMap"; version="1.3"; sha256="0c1v8wjqbr9y447h9iz9h2izrm1msdaz3mx1ry47qlcrq6ddlj9v"; depends=[RColorBrewer]; }; - WriteXLS = derive2 { name="WriteXLS"; version="6.5.0"; sha256="1rkc0r6l7cfz7h83i7gw6g0nlyy347mdh6bj73j0f8mdv3nmwwn4"; depends=[]; }; + WriteXLS = derive2 { name="WriteXLS"; version="6.6.0"; sha256="0adpwd80hhw6i965wp1w74s85vzq2gv5pf98zcvjwaqvpkrs25xw"; depends=[]; }; WtTopsis = derive2 { name="WtTopsis"; version="1.0"; sha256="0zwx75rgdyh7pjxjvd5xvxqkfryvhq2csn4sd0py0dgmjxb5p3ja"; depends=[]; }; WufooR = derive2 { name="WufooR"; version="1.0.1"; sha256="0iq1lc1b22zdvclkr4yivxxf8z5mdxik7lx9r3b38h2qy2rckqb2"; depends=[dplyr httr jsonlite]; }; XBRL = derive2 { name="XBRL"; version="0.99.19.1"; sha256="0mwpk84kp6r7f6fmlby0ka58fj50y592afxzp0wcrzmx65abp7md"; depends=[Rcpp]; }; XICOR = derive2 { name="XICOR"; version="0.4.1"; sha256="0c9s0sriiasbdanmijgy41gvpwf8hlqy34avalvimyll7y206v1r"; depends=[psychTools]; }; XKCDdata = derive2 { name="XKCDdata"; version="0.1.0"; sha256="1lx9frlbc549qrh4d3m79r3l9icfzqkgfgp8raa8x46a2havi0a5"; depends=[assertthat dplyr glue htmltools httr jsonlite magrittr tibble]; }; - XLConnect = derive2 { name="XLConnect"; version="1.0.8"; sha256="1lc6lfvvai92n7pi4m0xqy0wf78qijpzs6mcksrc45wx9474w9ap"; depends=[rJava]; }; + XLConnect = derive2 { name="XLConnect"; version="1.0.10"; sha256="1d72ssm47f3gg1r8q679whl7mvl2j5j60bhkzflv6vva3v5nghp3"; depends=[rJava]; }; XLS = derive2 { name="XLS"; version="0.1.0"; sha256="0a4jbfz9x9rn4k5v7qh3r9p7pal4piqg01469237lkq00m3lijy5"; depends=[mpoly]; }; XML = derive2 { name="XML"; version="3.99-0.16.1"; sha256="1i7fs9i2f6bdkxb45w2bck7sshlwxy2s32hi9fwa4nfmw2iy62m3"; depends=[]; }; + XML2R = derive2 { name="XML2R"; version="0.0.8"; sha256="1vssxy5bn46likkba8ycajkni14s7js31255swflr8007mc3pwmz"; depends=[httr plyr XML]; }; XNomial = derive2 { name="XNomial"; version="1.0.4"; sha256="1mwx302576rmsjllbq2clfxilm3hkyp5bw0wmwqbn0kgv5wpy8z6"; depends=[]; }; XR = derive2 { name="XR"; version="0.7.2"; sha256="0j8rkjw9y7mb0yj24nlisfd84148pnnakz8i2y35y2b8gmh5zhvz"; depends=[jsonlite]; }; - XRJulia = derive2 { name="XRJulia"; version="0.9.0"; sha256="0s3g6fkam6hj03mxvw75nzsq3zvz84b71jhrw3v64mdngazdv7zm"; depends=[XR]; }; + XRJulia = derive2 { name="XRJulia"; version="0.9.0.1"; sha256="0mm9cv2nsgkrpjv0kb5vzfy1aszdyawk7mdinv4gby78bdvvl0k5"; depends=[XR]; }; XRPython = derive2 { name="XRPython"; version="0.8"; sha256="0alg33spiaqf3jwg1qn543nxvbfaqv8gvf5px3grhbgrcmi5mcmj"; depends=[reticulate XR]; }; XRSCC = derive2 { name="XRSCC"; version="0.1"; sha256="0hs2whjsd02avaz79zkrd8gjw9qd7l6ysxmhx4w1r7gb1cj9rr7c"; depends=[]; }; XiMpLe = derive2 { name="XiMpLe"; version="0.11-2"; sha256="0pa06jm9g308pbh8bal7mjaiwbsjbdsxiyvm0f01405j3wkf64m3"; depends=[]; }; @@ -6075,12 +6193,12 @@ in with self; { YRmisc = derive2 { name="YRmisc"; version="0.1.6"; sha256="1crms7dqmhj7br1a5p5j0j7p6sdfimnip31207i6g24f9jkkysv1"; depends=[ggplot2 gridExtra]; }; YTAnalytics = derive2 { name="YTAnalytics"; version="0.1.0"; sha256="1kvw5p0fy3vqvlqwg2dnvpkq21rmf3c3xl46b2a9lifnr9fpncgk"; depends=[dplyr httr jsonlite]; }; YaleToolkit = derive2 { name="YaleToolkit"; version="4.2.3"; sha256="07rqi8j9gzrr4jj9h8mdnh5i251q8rwfdj4lbcmszp64pi09rkck"; depends=[foreach iterators]; }; + YatchewTest = derive2 { name="YatchewTest"; version="1.1.0"; sha256="13ni502538l76cxyjh3q35id117i64m8bg9zp7g1199ln2csms7h"; depends=[ggplot2 Rcpp]; }; YatesAlgo_FactorialExp_SR = derive2 { name="YatesAlgo.FactorialExp.SR"; version="4.0.4"; sha256="0jr2q2dla7dpf0ail0l8ar44cnaxrkvqc7cvsrsdgj97hr970lp9"; depends=[lubridate]; }; YieldCurve = derive2 { name="YieldCurve"; version="5.1"; sha256="0dckpls1g8787ysb3q11i531223d48zdimnmhvbyynmm2a8gi0xv"; depends=[xts]; }; Ymisc = derive2 { name="Ymisc"; version="0.1.0"; sha256="0mw430a0qdi9lddxlzc8vdk2yhm57c2mblj0yyy3g6icf5m7pppn"; depends=[]; }; Z10 = derive2 { name="Z10"; version="0.1.0"; sha256="02kxlzplmss68zj1z97fvpcjyhhpic9hlx8f5j3gqn3m1mqm1dja"; depends=[dplyr lubridate magrittr rjson stringr]; }; ZIBR = derive2 { name="ZIBR"; version="1.0.2"; sha256="0c24g3s946nmm8m22wvmhdgh2ph9f9hmslfyx1s3cq139793grrz"; depends=[statmod]; }; - ZIBseq = derive2 { name="ZIBseq"; version="1.2"; sha256="13rjy4jl9wil6hhpra4qmdis0iyqxchzsf9l7q6r0dz1f7dpd2nq"; depends=[gamlss gamlss_dist nlme]; }; ZIM = derive2 { name="ZIM"; version="1.1.0"; sha256="0scyfjn4ilsvha3x41c3b8bcfi31hlhwm77wn2a8hj5dsvnnmzig"; depends=[MASS]; }; ZINAR1 = derive2 { name="ZINAR1"; version="0.1.0"; sha256="1didfjb4215k9q82n1vaqln6f7fszsycsflydak2zl7xwficwhy6"; depends=[gamlss_dist gtools MASS scales statmod VGAM]; }; ZINARp = derive2 { name="ZINARp"; version="0.1.0"; sha256="1s5nvxcc7nw2kz90i7fqw5fi2qzzbsm5ppn92695v44q38h8jw9s"; depends=[progress]; }; @@ -6088,7 +6206,7 @@ in with self; { ZIPFA = derive2 { name="ZIPFA"; version="0.8.1"; sha256="134pkdn4slhiv27rdkkmh2z7xch30ns0jhzxgd7r05bky0z1iri1"; depends=[doParallel foreach Matrix optimx trustOptim]; }; ZIPG = derive2 { name="ZIPG"; version="1.1"; sha256="1g5viqqyl36xl43z7sbr9q4qgkwvv0pq308qw1rzdig4n1yxlwpj"; depends=[MASS pscl]; }; ZIprop = derive2 { name="ZIprop"; version="0.1.1"; sha256="1gvf6z7mx543a0hiqcknwhkplqa3mfmw3swi8n9vma10bqmgysx7"; depends=[data_table purrr rgenoud]; }; - ZLAvian = derive2 { name="ZLAvian"; version="0.1.0"; sha256="0ay54al5gr2jxb2v2zj23d0ypnkp8k37vxvg0c0mirb0qd23gqrp"; depends=[doParallel lme4 performance]; }; + ZLAvian = derive2 { name="ZLAvian"; version="0.2.0"; sha256="1bi3f8v0vlc5si9iz7iapw8h37i2084j576pm879lw16j18ka3v7"; depends=[doParallel lme4 performance]; }; ZRA = derive2 { name="ZRA"; version="0.2"; sha256="1sx1q5yf68hhlb5j1hicpj594rmgajqr25llg7ax416j0m2rnagi"; depends=[dygraphs forecast]; }; ZVCV = derive2 { name="ZVCV"; version="2.1.2"; sha256="0ws0v7i6r7skb8lv6j718k29v5qsy1b007jxidv81iv0jcz9zfpy"; depends=[abind BH dplyr glmnet magrittr mvtnorm Rcpp RcppArmadillo Rlinsolve]; }; ZeBook = derive2 { name="ZeBook"; version="1.1"; sha256="0v98kbz9njjdx60x9dn8hl8mc6x19i5knjyg2gkwfd667yy1rkl6"; depends=[deSolve triangle]; }; @@ -6124,8 +6242,9 @@ in with self; { abind = derive2 { name="abind"; version="1.4-5"; sha256="0b1zd8jbnl6l292cr9rb50m09fy3ylxvzkpgi5lfb1nbzddcwfis"; depends=[]; }; abjData = derive2 { name="abjData"; version="1.1.2"; sha256="0q7l9lxm41pjkdv98axx87wcxjxfyccfwi2k1b29g07pfjszs0hv"; depends=[]; }; abjutils = derive2 { name="abjutils"; version="0.3.2"; sha256="0lmf4va8qnzwg698i2h4fcwvd6dhsgdkqsfh41aa3wg1flimhsr7"; depends=[dplyr magrittr purrr rlang rstudioapi stringi stringr tidyr]; }; + ablasso = derive2 { name="ablasso"; version="1.0"; sha256="0xgj3bfjahvnq34r0312d00l3wpdwfnqv7a3j2lklazc69cg7wra"; depends=[hdm matrixStats mvtnorm]; }; abmR = derive2 { name="abmR"; version="1.0.10"; sha256="0klfrclmwxsqm3aazs9jlw8mh5rzcsvm2wjk2r1ycx76kvkx8wii"; depends=[geosphere ggplot2 googledrive gstat gtsummary kableExtra maps purrr raster rnaturalearth sf sp swfscMisc table1 tmap]; }; - abn = derive2 { name="abn"; version="3.0.6"; sha256="0833070j4q553kc4g5wydln3q63g0igaam9h3rbylxcs0p1v2psj"; depends=[doParallel foreach graph lme4 mclogit nnet Rcpp RcppArmadillo Rgraphviz rjags stringi]; }; + abn = derive2 { name="abn"; version="3.1.1"; sha256="1sixgahjcy82yiiixgxiqbm8jcajqz0m3h0hwwm202iwzi3vyhiv"; depends=[doParallel foreach graph lme4 mclogit nnet Rcpp RcppArmadillo Rgraphviz rjags stringi]; }; abnormality = derive2 { name="abnormality"; version="0.1.0"; sha256="1fzfskl9akl06nliy8hkv2a0pznpj8pwcypg3gj5r2nzvr3kan9v"; depends=[MASS Matrix]; }; abodOutlier = derive2 { name="abodOutlier"; version="0.1"; sha256="1pvhgxmh23br84r0fbmv7g53z2427birdja96a67vqgz18r3fdvj"; depends=[cluster]; }; abseil = derive2 { name="abseil"; version="2023.8.2.1"; sha256="1a65zwkrxqidbcfpin9k119zip8vb0vnl87akimjn3xnynb3i5br"; depends=[]; }; @@ -6142,6 +6261,7 @@ in with self; { accelmissing = derive2 { name="accelmissing"; version="1.4"; sha256="1nql9inx6azdzi3z4sfm2vdml2mms6krl8wzlf1dn1c97ahn57fy"; depends=[mice pscl]; }; accept = derive2 { name="accept"; version="1.0.0"; sha256="0yjihmgi94yfwhnvgw4v235yyr8n6w1ass2qbmvk0ia1hmjis8zq"; depends=[dplyr reldist]; }; accessibility = derive2 { name="accessibility"; version="1.4.0"; sha256="0c130kbh3h42pj0iw4zb9kv1i8zmy12znyhxbb5cvr8lwgkzdc4n"; depends=[checkmate data_table Hmisc Rdpack]; }; + accessr = derive2 { name="accessr"; version="1.0.1"; sha256="0hlf1kdxmw1rqscqazan8d3dqr5kfsxngrmkdb41pi5k5qsvbcx4"; depends=[rmarkdown]; }; accessrmd = derive2 { name="accessrmd"; version="1.0.0"; sha256="1jdbbsi8nzvr8hnrpw5sr8zf55irnwwrnkwx4vd0zx84bxvw3bqy"; depends=[ggplot2 htmltools knitr RCurl rlist stringr]; }; accrual = derive2 { name="accrual"; version="1.4"; sha256="0dygp8xar6dqx822ghjqvi8c597xjb7bqn57475fs4nw5zz709lk"; depends=[fgui SMPracticals tcltk2]; }; accrualPlot = derive2 { name="accrualPlot"; version="1.0.7"; sha256="1xd855yzr405kl6qqm68zgcj3j112xmpkx0f1z8gd9z7s3sr74h0"; depends=[dplyr ggplot2 lubridate magrittr purrr rlang]; }; @@ -6155,7 +6275,7 @@ in with self; { acepack = derive2 { name="acepack"; version="1.4.2"; sha256="14dccqpww3bv59236r0vr6bibhsafhbm7qshdjxp5ww3nw9cvzsv"; depends=[]; }; acfMPeriod = derive2 { name="acfMPeriod"; version="1.0.0"; sha256="1yww8isfrbs2v9s94hx7p2imyszcgadwafdgpj438n2ik0q6p9d5"; depends=[MASS]; }; acid = derive2 { name="acid"; version="1.1"; sha256="030i0y8s283ivbsmjccpbv9v7mgbcg2jk9df7vgcbbns74swf9hd"; depends=[gamlss gamlss_dist Hmisc]; }; - acled_api = derive2 { name="acled.api"; version="1.1.7"; sha256="1ysgrndcb4hdlhfr34dvhlnqark0k2pf42sq0wbj28p2031wjbms"; depends=[httr jsonlite]; }; + acled_api = derive2 { name="acled.api"; version="1.1.8"; sha256="02xc32yqg0vdv8anbfqydnrkc79yj51xyy63skinm5dzxpswbq8k"; depends=[httr jsonlite]; }; acnr = derive2 { name="acnr"; version="1.0.0"; sha256="087hq4i7jp67ba2finzsqjfnqbiprl33na6ryjv9zqzsdawj9cym"; depends=[]; }; acopula = derive2 { name="acopula"; version="0.9.4"; sha256="0asxfcjrsr9d7ab59pdajs0zvdjgwfswk9rdlpfdr51535wpjrfy"; depends=[]; }; acp = derive2 { name="acp"; version="2.1"; sha256="0lcwbjcyyr32m6qjmjqh25qjwrbyqj1n092xhgbhxzd8fslppnmn"; depends=[quantmod tseries]; }; @@ -6168,10 +6288,10 @@ in with self; { actLifer = derive2 { name="actLifer"; version="1.0.0"; sha256="1nqlsdywrfvq94zi2xk90m9m768x18fk6p6jrds8mpv63w2y3frc"; depends=[dplyr]; }; actel = derive2 { name="actel"; version="1.3.0"; sha256="0hd1mkshywszswnllcx1lvlghnfk92438r57v6r7w8p5i9m04z9x"; depends=[circular data_table DiagrammeR DiagrammeRsvg fasttime ggplot2 knitr readr reshape2 rmarkdown rsvg scales stringi stringr svglite]; }; actilifecounts = derive2 { name="actilifecounts"; version="1.1.1"; sha256="0p65j7l8d8503nil34faz7jashv5rw327xlpphwhwa4x5wga5z01"; depends=[GGIRread gsignal pracma]; }; - activAnalyzer = derive2 { name="activAnalyzer"; version="2.0.2"; sha256="1kvpdhv8rcbxqrdh58ffh0bwwwi5w62r75chm5s7j6358lymiajh"; depends=[dbplyr dplyr flextable forcats ggplot2 golem hms lubridate magrittr modelr patchwork PhysicalActivity plyr reactable rmarkdown RSQLite shiny shinycssloaders shinydashboard shinydashboardPlus shinyFeedback shinyjs stringr tidyr zoo]; }; + activAnalyzer = derive2 { name="activAnalyzer"; version="2.1.1"; sha256="0jbzbn9y9lwhy4003ym4w680glj9mdq3gwkk64hfsh94c52xihk3"; depends=[assertthat dbplyr dplyr flextable forcats ggplot2 golem hms lubridate magrittr modelr patchwork PhysicalActivity plyr reactable rmarkdown RSQLite shiny shinycssloaders shinydashboard shinydashboardPlus shinyFeedback shinyjs stringr tidyr zoo]; }; activPAL = derive2 { name="activPAL"; version="0.1.3"; sha256="1h6hp5z89ji73gdzxy1dgbfwjysiy5lvcqh90xagpb7sa7ahs3na"; depends=[devtools dplyr ggplot2 lubridate magrittr tidyr]; }; activatr = derive2 { name="activatr"; version="0.2.0"; sha256="0d3r9xp7nrva84az3p211f3g995g8p0lz49f6fjlmzd9pc3jzxg9"; depends=[dplyr geosphere ggmap glue httr lubridate rlang slider tibble xml2]; }; - activegp = derive2 { name="activegp"; version="1.1.0"; sha256="1yfib5q649kag45ryyqsbq9lq9yd74rrjjk65a6c9rkfa4f6w8xv"; depends=[hetGP lhs MASS numDeriv Rcpp RcppArmadillo RcppProgress]; }; + activegp = derive2 { name="activegp"; version="1.1.1"; sha256="1b64k0k6l9dgvyqhd6j9plabaibjayfm5maa4bpwxxgwkp122r3c"; depends=[hetGP lhs MASS numDeriv Rcpp RcppArmadillo RcppProgress]; }; activity = derive2 { name="activity"; version="1.3.4"; sha256="10gp2yvqxz5ysmh5z8qvrpli8kc2kn2z3nd2llfabpyh21476in2"; depends=[pbapply]; }; actogrammr = derive2 { name="actogrammr"; version="0.2.3"; sha256="1jzvarmd41yqlrkagzlc8m19n5mn0w0b36fy50lyvgrfsafjfbqa"; depends=[dplyr ggplot2 lubridate readr tidyr]; }; actuaRE = derive2 { name="actuaRE"; version="0.1.5"; sha256="02f90vdbfz6shsw4ndhqbqjsrwiwmi1jp66bsl897cb8fnywnzs4"; depends=[cplm data_table ggplot2 knitr lme4 magrittr nlme statmod]; }; @@ -6195,12 +6315,12 @@ in with self; { adaptTest = derive2 { name="adaptTest"; version="1.2"; sha256="0wb21mac5h683qgjdic29kpncr22ri93iwq8w4b7hywaxkv0zj2p"; depends=[lattice]; }; adaptalint = derive2 { name="adaptalint"; version="0.2.4"; sha256="15qdcvnnbgcps8j5k79354wsc9alswijv8lcafg2i3lghaw536yf"; depends=[dplyr lintr purrr]; }; adaptiveGPCA = derive2 { name="adaptiveGPCA"; version="0.1.3"; sha256="1766b3d9ysa9axfxqwy6gzj0z8hsl34pic6l63nbidqas55vnjqa"; depends=[ape ggplot2 phyloseq shiny]; }; - adaptivetau = derive2 { name="adaptivetau"; version="2.3"; sha256="1m82nibsrkwqvc0aq9yrzakpa7k663i1gbis6ikvs7dfxf9mpijx"; depends=[]; }; - adaptr = derive2 { name="adaptr"; version="1.3.2"; sha256="1kqxlqxbcvx8fy0cdihcl9sxj5y52dkjpymjbdzbrzx3dyq6kmlw"; depends=[]; }; + adaptivetau = derive2 { name="adaptivetau"; version="2.3-1"; sha256="0krv2pw7gg0nch96h0ffy6wli1cjscfl424jy04q0zvvqfghkvqd"; depends=[]; }; + adaptr = derive2 { name="adaptr"; version="1.4.0"; sha256="0a0rrqhb1nyx5m0647ljnmy8ffc78swsx8jh8p8hzh0s45kxrg5y"; depends=[]; }; adaptsmoFMRI = derive2 { name="adaptsmoFMRI"; version="1.2"; sha256="00npcl2js9vj5r3l66cp5d2l807klia581pig1gsyjjq4rvmfa7v"; depends=[coda Matrix MCMCpack mvtnorm spatstat spatstat_geom]; }; - adbcdrivermanager = derive2 { name="adbcdrivermanager"; version="0.10.0"; sha256="1mg2m14jc8wd3w9pb0ayqqm28dgdmwqhgs811m1hc1jywr0hlmbv"; depends=[nanoarrow]; }; - adbcpostgresql = derive2 { name="adbcpostgresql"; version="0.10.0"; sha256="1xz4hxv0vn6vi6k07qwvbiws9ywj4cxnf2spnlcp0ajjxy4p6xlv"; depends=[adbcdrivermanager]; }; - adbcsqlite = derive2 { name="adbcsqlite"; version="0.10.0"; sha256="1jgydhi1fnb0dlqksw58lvacakqjsksl32358dvzlkgihvjqzfds"; depends=[adbcdrivermanager]; }; + adbcdrivermanager = derive2 { name="adbcdrivermanager"; version="0.12.0"; sha256="0kvn6agx5vscdl77zzkz8lhlr2i7p9qda6q52ligwvjyrh5zyi48"; depends=[nanoarrow]; }; + adbcpostgresql = derive2 { name="adbcpostgresql"; version="0.12.0"; sha256="031qv19rx389br9dv3nxpghy580g1aywv265la03s9g6d5jw9j4r"; depends=[adbcdrivermanager]; }; + adbcsqlite = derive2 { name="adbcsqlite"; version="0.12.0"; sha256="085djnpafh4gdklai3x54bjbkqkiyjlz9nygddmid3x3x4xg01vj"; depends=[adbcdrivermanager]; }; adbi = derive2 { name="adbi"; version="0.1.1"; sha256="17w74ggng77yvpqn0vw1s1gylmchrv2dq6s19fl56dl6nqp6bfpa"; depends=[adbcdrivermanager DBI nanoarrow]; }; adc = derive2 { name="adc"; version="1.0.0"; sha256="152j863rfrmjpaambxy6hc57zcpp0wlyd6kl7miryk3z0yvngcw9"; depends=[runner]; }; add2ggplot = derive2 { name="add2ggplot"; version="0.3.0"; sha256="0c94i1cfp2pvplvxmfvvz2fyj026r1jnax05mrzrc7ppnqzy25y0"; depends=[ggplot2 magick magrittr RColorBrewer zeallot]; }; @@ -6210,9 +6330,9 @@ in with self; { addinsJoaoMelo = derive2 { name="addinsJoaoMelo"; version="0.1.0"; sha256="1slx9vfcpb468asvgcj0vh7djc5rndzdpcp96qmnis77fx67xj5s"; depends=[dplyr purrr rstudioapi stringr]; }; addinsOutline = derive2 { name="addinsOutline"; version="0.1.6"; sha256="125qfqbpv5xflw8qlyh8m3iyd6biyp3arls3z7y8bqkbghifl730"; depends=[dplyr DT fs miniUI rmarkdown rstudioapi shiny shinyFiles stringr tibble yaml]; }; addinslist = derive2 { name="addinslist"; version="0.5.0"; sha256="0gis7485m7gz3xz5wfxxm3136cg2j9i6f6zq8gbv206w261y1nfb"; depends=[curl DT miniUI rappdirs remotes rmarkdown rvest shiny shinyjs xml2]; }; - additive = derive2 { name="additive"; version="0.0.5"; sha256="1i9837wlz89bl4890735xrb2qi1yaijx8iybr20ky4q9swq3zg7d"; depends=[dplyr mgcv parsnip purrr rlang tibble]; }; + additive = derive2 { name="additive"; version="1.0.1"; sha256="1w81vapv5xpxl8nl2gjr01z0jkanapn5152b1xxvil1n8byls5vq"; depends=[dplyr mgcv parsnip purrr rlang tibble]; }; additiveDEA = derive2 { name="additiveDEA"; version="1.1"; sha256="15nxpdybsda6yhjk23bpafr8v1zdx8332pcxf26k795q3ypjpiy2"; depends=[Benchmarking lpSolveAPI]; }; - additivityTests = derive2 { name="additivityTests"; version="1.1-4.1"; sha256="00kzfv86z6kk0gvbz9mg3p6xi5fb8cn74rhslr17rdpd02md0884"; depends=[]; }; + additivityTests = derive2 { name="additivityTests"; version="1.1-4.2"; sha256="07fms1mf71ycq6w2k3hmgl6q3sc5x4qkm7d0diymbbgpbpxggwh8"; depends=[]; }; addreg = derive2 { name="addreg"; version="3.0"; sha256="13bwmgxylwi02g60j1rr51cr5jvvkl2nvf2lnnhnq46fhvs2ma7s"; depends=[combinat glm2 turboEM]; }; ade4 = derive2 { name="ade4"; version="1.7-22"; sha256="1d4knc1c1hha4gwcakbllzmff4g0mh56y058dn6wp9m2hd7gaz80"; depends=[MASS pixmap Rcpp RcppArmadillo sp]; }; ade4TkGUI = derive2 { name="ade4TkGUI"; version="0.3-1"; sha256="1y0f62n8iv002ayd1nyl3bmszw558niwnfzjpvk0a7cbvfdyvwcg"; depends=[ade4 adegraphics lattice]; }; @@ -6224,7 +6344,7 @@ in with self; { adehabitatLT = derive2 { name="adehabitatLT"; version="0.3.27"; sha256="0siaj9h9gyar6pmnv9bp4k7lcpfcvhykl3jj80pzdb6yyybgj2zx"; depends=[ade4 adehabitatMA CircStats sp]; }; adehabitatMA = derive2 { name="adehabitatMA"; version="0.3.16"; sha256="1jmmi6rh3rnv5b3qy1xhy0rs4dnkysf4rxjfs0im1i5n4rd437h8"; depends=[sp]; }; adephylo = derive2 { name="adephylo"; version="1.1-16"; sha256="0n6f2v287gkbdrfxq50b1lbya4znqg50lrah0v540vmydgi5vkmm"; depends=[ade4 adegenet ape phylobase]; }; - adepro = derive2 { name="adepro"; version="3.2.0"; sha256="0sw42yld4bjgfiqm957ply605zsj66mmwvkzi73hsbkk31w1k5fb"; depends=[audio Cairo dplyr gclus haven jsonlite MASS readr rlang seriation shape shiny shinyBS shinyjs shinyWidgets TeachingDemos tidyr V8]; }; + adepro = derive2 { name="adepro"; version="4.1.0"; sha256="06zj8vq7py41g0bjpnd4fczwxcr4k1lb1cxjxfc92fhj0wk51k36"; depends=[audio Cairo dplyr forcats haven here MASS readr rlang seriation shape shiny shinyBS shinyjs shinyWidgets tidyr V8]; }; adept = derive2 { name="adept"; version="1.2"; sha256="1dpfmfnqzci6p7wqwpp8y0cisx11r8kdsqjm85skb512n35m0i3a"; depends=[dplyr dvmisc magrittr pracma]; }; adeptdata = derive2 { name="adeptdata"; version="1.1"; sha256="0wzavbwc1slyr3wh5jkapghpa748rc86pbw5b4gcxki73r08r7j2"; depends=[]; }; adespatial = derive2 { name="adespatial"; version="0.3-23"; sha256="0cszq382vpd8alc98hnrzqj1wyp8bcfbvqpi1d2rqbr12f5qgq3h"; depends=[ade4 adegraphics adephylo lattice MASS shiny sp spdep vegan]; }; @@ -6237,29 +6357,30 @@ in with self; { adjROC = derive2 { name="adjROC"; version="0.3"; sha256="0bf7vvhllpl8irqw1ahfhbhqq67v6jxblapv91ddkgpk2dl0sp03"; depends=[boot ggplot2 ROCit yardstick]; }; adjSURVCI = derive2 { name="adjSURVCI"; version="1.0"; sha256="0nv6m7ds57d0h44d745s0424ssrgn39ihd294dgrzrpmh8gxhq95"; depends=[Rcpp RcppArmadillo survival]; }; adjclust = derive2 { name="adjclust"; version="0.6.9"; sha256="1iq0pfw0kdi792iigpj4vq8phbcs9bid09bdvpxwwxcq65djni41"; depends=[capushe dendextend ggplot2 Matrix Rcpp RcppArmadillo rlang sparseMatrixStats]; }; - adjustedCurves = derive2 { name="adjustedCurves"; version="0.11.0"; sha256="1fw76s86zs9fxaifiy647wvj8y5bxlfcn9g7a6am2qcifrwq0yb6"; depends=[doParallel doRNG dplyr foreach R_utils rlang]; }; + adjustedCurves = derive2 { name="adjustedCurves"; version="0.11.1"; sha256="047r9fi9ilcfnb6shkqsnrz4c4gs6x1nbff00wfamncjv19s74yh"; depends=[doParallel doRNG dplyr foreach R_utils rlang survival]; }; adjustedcranlogs = derive2 { name="adjustedcranlogs"; version="0.1.0"; sha256="08apfvpqvnnalx230p4qf5ckrwm1sgzras4zfrysgym5d4map9ci"; depends=[cranlogs dplyr lubridate rvest xml2]; }; adklakedata = derive2 { name="adklakedata"; version="0.6.1"; sha256="1lzj3ib4bgfkq5lq12n47pwc52h7k35xbbwj6brwsgx1gd4fx3x6"; depends=[httr rappdirs]; }; adlift = derive2 { name="adlift"; version="1.4-5"; sha256="0kf1akx5c4c7mdy9ysfdik2xi810jcysw9ynmvxlgw2zykqxvqdk"; depends=[EbayesThresh]; }; - admiral = derive2 { name="admiral"; version="1.0.2"; sha256="18q60qk2wr2jp8zxd9xz66glpr00qvlq88yqd2ybv76zlapcq6gg"; depends=[admiraldev dplyr hms lifecycle lubridate magrittr purrr rlang stringr tidyr tidyselect]; }; + admiral = derive2 { name="admiral"; version="1.1.0"; sha256="1ynqmpswhcy4qlaf8yvhhlax6j9xii5m7bwvrxrjzqnpdcif4hrb"; depends=[admiraldev cli dplyr hms lifecycle lubridate magrittr purrr rlang stringr tidyr tidyselect]; }; admiral_test = derive2 { name="admiral.test"; version="0.7.0"; sha256="1bmzj9r6nbyk4wd63ps6qwrj35lpj4s4jj4dvlg0p7yyssig68pb"; depends=[]; }; - admiraldev = derive2 { name="admiraldev"; version="1.0.0"; sha256="0n944il50mlqwclb6251zck89l9fyki7j711h4pp4fba3hs96s7r"; depends=[dplyr hms lifecycle lubridate magrittr purrr rlang stringr tidyr tidyselect]; }; + admiraldev = derive2 { name="admiraldev"; version="1.1.0"; sha256="0cpdhyiis0mwd219h3y4l1scy49bl3qjd9sy2kln4ymy0xsbasyg"; depends=[cli dplyr glue lifecycle lubridate purrr rlang stringr tidyr tidyselect]; }; admiralonco = derive2 { name="admiralonco"; version="1.0.0"; sha256="03q02l4abrcgpg17cyfq2vhzinlywm0ir6wqx2ch43d3agzyypzy"; depends=[admiral admiraldev dplyr lifecycle lubridate magrittr rlang tidyselect]; }; admiralophtha = derive2 { name="admiralophtha"; version="1.0.0"; sha256="0ip69mishnx8yllfp2vm2qsa5917hwi974lr8qwil9xx6d2hgbkz"; depends=[admiral admiraldev dplyr hms lifecycle lubridate magrittr purrr rlang stringr tidyr tidyselect]; }; admiralvaccine = derive2 { name="admiralvaccine"; version="0.2.0"; sha256="0asi4939k50y05f1klga4i8wyw4hxlczsz3sg3as39pdsp6zzn48"; depends=[admiral admiraldev assertthat dplyr hms lifecycle lubridate magrittr metatools purrr rlang stringr tidyr tidyselect]; }; admisc = derive2 { name="admisc"; version="0.35"; sha256="0gzdb9dm34qfkjqgfrd3wm96dzhcps4xayyrhp80mzgh14zmnjyg"; depends=[]; }; - admix = derive2 { name="admix"; version="2.1-2"; sha256="1g6s2ll31g8klxmg6zg7scy5l84bqzc3ncjsbw8zxrbrjzyd2yzx"; depends=[cubature fdrtool Iso MASS orthopolynom pracma Rcpp]; }; + admix = derive2 { name="admix"; version="2.1-3"; sha256="0h6saazz2p8pliznn2ggbi6zj5ib00ylghfxj5i9nk21p4y0s59s"; depends=[cubature fdrtool Iso MASS orthopolynom pracma Rcpp]; }; admixr = derive2 { name="admixr"; version="0.9.1"; sha256="0wszpzs53cbnha13g2ldpq6z5ndw2v2xgrzadqkjm3hsp6akv4bl"; depends=[dplyr magrittr readr rlang stringr tibble]; }; admmDensestSubmatrix = derive2 { name="admmDensestSubmatrix"; version="0.1.0"; sha256="1a5lfm10aj6wdjibdnmffn75zvy6x69w8nqcx2i23gxg6v0xlqcl"; depends=[Rdpack]; }; admtools = derive2 { name="admtools"; version="0.2.0"; sha256="11xp0zcv0qj0l4nq1c5wc4w6zc569qfhd4ir6knwynq68n89p8c2"; depends=[ape]; }; adnuts = derive2 { name="adnuts"; version="1.1.2"; sha256="0nkciv5sfj3bws6kpgrnaq4ziasibaz44w64mb86zmr8420nyc1q"; depends=[ellipse ggplot2 R2admb rlang rstan snowfall]; }; adobeanalyticsr = derive2 { name="adobeanalyticsr"; version="0.4.0"; sha256="1cbr86ssnd0bl6pvqziz16nvh3gzmd170pkk8wr2rkhm0rryh2l4"; depends=[assertthat dplyr ggplot2 glue httr jose jsonlite lifecycle lubridate memoise openssl progress purrr R6 rlang scales stringr tidyr vctrs]; }; + adoptr = derive2 { name="adoptr"; version="1.0.1"; sha256="0crlwk6nk88lxz76klss7igmdx8sw99yj52kkmsa6l49s29wwqv2"; depends=[glue nloptr]; }; adproclus = derive2 { name="adproclus"; version="1.0.2"; sha256="1aj9bb86fmgq6ln39pmkws0bp07wf02k3fahgsv3hq86yflgac8q"; depends=[checkmate corrplot gtools igraph NMFN qgraph withr]; }; adpss = derive2 { name="adpss"; version="0.1.2"; sha256="1nk12yn1n483scnphf8pab8w633dk64c8n17zlq851zywbncs0gk"; depends=[Rcpp]; }; ads = derive2 { name="ads"; version="1.5-10"; sha256="0arxwjy13fijf5w5491hyr7l4cbmp83aa4hckjxx43zbrdyvvrpz"; depends=[ade4 spatstat_geom]; }; adsDataHubR = derive2 { name="adsDataHubR"; version="0.1.1"; sha256="19csivbg3f0g2r11l7jrciqq2lhg50km7qv29xfs6ba5cf678hb9"; depends=[httr jsonlite lubridate]; }; adventr = derive2 { name="adventr"; version="0.1.8"; sha256="0nja1a2xhaimz1fg2bb838x9a37sswjqjc68mp59gbdwkfpdii37"; depends=[BayesFactor boot car dplyr effects effsize forcats GGally ggplot2 Hmisc learnr lm_beta nlme readr robust sandwich sjstats tidyr WRS2]; }; - adw = derive2 { name="adw"; version="0.3.1"; sha256="00f4z7h4y1gmy9smxy8jwnr4alw641i1lmx4dyjk39jzzrx9fz1d"; depends=[sf terra]; }; + adw = derive2 { name="adw"; version="0.4.0"; sha256="0ng9iabxh15xaj10mi6xdggmx6fcvdmmx1c9nlyfkbnb4f1qzlxp"; depends=[cnmap sf terra]; }; adwave = derive2 { name="adwave"; version="1.3"; sha256="11iy50ng0zxvwsvdsvx262j8zgqaai308lp5is47az7xzvk57mx7"; depends=[waveslim]; }; adwordsR = derive2 { name="adwordsR"; version="0.3.1"; sha256="1w5qg4psm8pj89f09pz7in8zkafaimik1n6hx29y55jpmbxbk2gn"; depends=[RCurl rjson]; }; aeddo = derive2 { name="aeddo"; version="0.1.1"; sha256="005l1cxpk30m1krdkrr62i7d1gp8j1v5f9r8j81v6r3w3iwzr449"; depends=[checkmate dplyr ggplot2 lifecycle magrittr purrr rlang tibble tidyr]; }; @@ -6283,7 +6404,7 @@ in with self; { agcounts = derive2 { name="agcounts"; version="0.6.6"; sha256="1q993a7m639zn5cl8lv300qbqgh8wycqckaynvv9lc6a6j60ygjv"; depends=[bslib data_table DBI dplyr GGIR ggplot2 gsignal lubridate magrittr Rcpp RcppArmadillo reactable read_gt3x reticulate RSQLite shiny stringr zoo]; }; ageg = derive2 { name="ageg"; version="1.0.0"; sha256="0dcmwgznxf1jjsifpm3nn3jk25mm27l6f6f6jfi2n3crxgqfizyv"; depends=[]; }; agena_ai = derive2 { name="agena.ai"; version="1.1.1"; sha256="1nn2634r93gg3nwqnlg8c44zajl5jadx0cszah8nq502qby5y36j"; depends=[httr openxlsx Rgraphviz rjson]; }; - ageutils = derive2 { name="ageutils"; version="0.0.2"; sha256="13hrcrhlbnd9828hls1dl8wczd5gd16jjqwbnsa1043wnm7sfg1z"; depends=[]; }; + ageutils = derive2 { name="ageutils"; version="0.0.3"; sha256="1rrn0ag70bix45kkzpvkyz5hqnh86p0pw902is19gxf3qb8nj2bd"; depends=[]; }; agfh = derive2 { name="agfh"; version="0.2.1"; sha256="0wkagdhbf4hgl1vrb6bxyan5ryp42xd8w7kbyspahqx8agzbn8zg"; depends=[ggplot2 goftest ks mvtnorm]; }; aggTrees = derive2 { name="aggTrees"; version="2.0.2"; sha256="15dz96g8vyyijbv7nm9wwzwwsm0kzv8mwhrirnm14219cx4z2r76"; depends=[boot broom car caret estimatr grf rpart rpart_plot stringr]; }; agghoo = derive2 { name="agghoo"; version="0.1-0"; sha256="0vaqmydww494ql6xbhhjkpap3lqkhf8hkbcrr1pk81qpszs0pndm"; depends=[class FNN R6 rpart]; }; @@ -6303,7 +6424,7 @@ in with self; { agrostab = derive2 { name="agrostab"; version="0.1.0"; sha256="0mcskv3144j594wqljzn5pwbhkxh6sb76b1c2wabzjvi61zrapiv"; depends=[dplyr ggplot2 rlang]; }; ags = derive2 { name="ags"; version="1.0.1"; sha256="1g2q5cbpa0iwkwhcng15vqn8jgx5lingjfwakj320jr76x9bx6my"; depends=[dplyr rlang stringr]; }; agtboost = derive2 { name="agtboost"; version="0.9.3"; sha256="1z2ys4cn859vas3q1if50k46cryn7wwy1pjqbc8n9dhdn5zxn3sk"; depends=[Rcpp RcppEigen]; }; - agua = derive2 { name="agua"; version="0.1.3"; sha256="1mqx9a4cqplbq4llfyjh6mbyxr6in1a5f65hjnyhm7my6vhz4zr1"; depends=[cli dials dplyr generics ggplot2 glue h2o hardhat parsnip pkgconfig purrr rlang rsample tibble tidyr tune vctrs workflows]; }; + agua = derive2 { name="agua"; version="0.1.4"; sha256="1mq7h2ff3ggqy6xsng1cz0mjdfbdnsp9yl2d2c20ma14k3rdf0q5"; depends=[cli dials dplyr generics ggplot2 glue h2o hardhat parsnip pkgconfig purrr rlang rsample tibble tidyr tune vctrs workflows]; }; agvgd = derive2 { name="agvgd"; version="0.1.2"; sha256="0b3wvxrp77b180pm8asih88cyh4vf2yjj7rvl0f02x28a0ia0xki"; depends=[crayon dplyr glue grantham magrittr purrr rlang seqinr stringr tibble tidyr vctrs]; }; ahMLE = derive2 { name="ahMLE"; version="1.20.1"; sha256="1phfzl0kynrq1if12h736jdxrfqc3i4kd32hp7sy2k2z7hkj1dkm"; depends=[invGauss Matrix Rcpp RcppArmadillo survival]; }; ahaz = derive2 { name="ahaz"; version="1.15"; sha256="0k6i8s2miic2y1dgwjlpkhmaw6k3phn772p0600gcnjqxbqajznh"; depends=[Matrix survival]; }; @@ -6314,8 +6435,8 @@ in with self; { aiRly = derive2 { name="aiRly"; version="0.1.0"; sha256="0d3w5dwk0b3pd49zw2005rili4p3l1i3x4hzp8cf6rljr86x01cy"; depends=[httr jsonlite reshape2 tibble]; }; aiRthermo = derive2 { name="aiRthermo"; version="1.2.1"; sha256="058082qdfi1pbdgf26vbfahri1kbc8b2l816q4dq89j5aj5is0a2"; depends=[]; }; aidar = derive2 { name="aidar"; version="1.0.5"; sha256="1q2iz2qzh2yl0v0sc537xq4vbx2nblym3kv419vr7jvrghdpx3vj"; depends=[XML]; }; - aides = derive2 { name="aides"; version="1.3.2"; sha256="1ya3baz7azxafl2r79z9lij62b5hpcs8bh428s2f7246sdawpsvb"; depends=[boot meta]; }; - aifeducation = derive2 { name="aifeducation"; version="0.3.2"; sha256="1s32n3w1igxa5cx5srv3val489an8l9gw3s7v9123s0hp1l5raki"; depends=[abind doParallel foreach iotarelr irr irrCAC Rcpp RcppArmadillo reshape2 reticulate rlang smotefamily stringr]; }; + aides = derive2 { name="aides"; version="1.3.3"; sha256="0cfi9h2bmjpxrvhbamm808s1pzgw9p9xxj70ickqc7ki8rzzk6cw"; depends=[boot meta]; }; + aifeducation = derive2 { name="aifeducation"; version="0.3.3"; sha256="0lnxbvmsalis942nxgf0c3j602wcdzpvdm9r194c2ci0xpybc6ls"; depends=[abind doParallel foreach iotarelr irr irrCAC Rcpp RcppArmadillo reshape2 reticulate rlang smotefamily stringr]; }; aihuman = derive2 { name="aihuman"; version="0.1.0"; sha256="0isd6j3qfhl9dfcknzsfyipvvni7bw6cpdkk4v5azpi3mcixbq4n"; depends=[abind coda doParallel dplyr foreach ggplot2 lme4 magrittr MASS metR purrr Rcpp RcppArmadillo RcppEigen tidyr]; }; aimPlot = derive2 { name="aimPlot"; version="1.0.0"; sha256="1d52b7kccxba6j7n0gbd7pzs0p87zn32vv8gdf2f7lyr75qzgz7x"; depends=[ggplot2]; }; aimsir17 = derive2 { name="aimsir17"; version="0.0.2"; sha256="0v804maqaygqhw3y9wqap3h9vvjniqnnbsv1psjj500r2yscicxs"; depends=[tibble]; }; @@ -6342,7 +6463,7 @@ in with self; { alabama = derive2 { name="alabama"; version="2023.1.0"; sha256="075zqyarb970d4zpxsivaxhnmdg916ypfxrp0mqngnww5p3nfpwj"; depends=[numDeriv]; }; alakazam = derive2 { name="alakazam"; version="1.3.0"; sha256="01alngdynigvycmpqa71ccndw6v91hmrs3c2ah0r148rxdgbw58v"; depends=[airr ape Biostrings dplyr GenomicAlignments ggplot2 igraph IRanges Matrix progress Rcpp readr rlang scales seqinr stringi tibble tidyr]; }; alarmdata = derive2 { name="alarmdata"; version="0.2.1"; sha256="1gx4s4dbhqvbj5y8qxgvm2x4a5n22llwiqm8a6iavg1yd3sqhzg0"; depends=[censable cli curl dataverse dplyr geomander rappdirs readr redist redistmetrics rlang sf stringr tidyselect tinytiger]; }; - albatross = derive2 { name="albatross"; version="0.3-7"; sha256="0hs5i4wzm4kf7k9x4a5l18h1gx0zdq33fi21571x48bi5ic1294w"; depends=[CMLS lattice Matrix multiway pracma]; }; + albatross = derive2 { name="albatross"; version="0.3-8"; sha256="1cayp4025h14p66alagpvnwm5f05l7gv132x3a2d40cf77nrrpky"; depends=[CMLS lattice Matrix multiway pracma]; }; albopictus = derive2 { name="albopictus"; version="0.5"; sha256="0kw1agm9jqi9wl5zbx8bryngy751g3sih36rgbrx0m2170cy42d9"; depends=[]; }; ald = derive2 { name="ald"; version="1.3.1"; sha256="12nf9vakayw24clrg56fh9x85kg277iricbs8ymahkjqjnc1p3cz"; depends=[]; }; aldvmm = derive2 { name="aldvmm"; version="0.8.8"; sha256="1qqfhfrhqlzlmfdf84sq9v17d6jrnn4w7yilskbrg74zvbcbc3k8"; depends=[checkmate Formula lmtest numDeriv optimx sandwich]; }; @@ -6353,19 +6474,19 @@ in with self; { algo = derive2 { name="algo"; version="0.1.0"; sha256="1g18p8jyj9crkqm16y2im3r9xzqwa36javv4vi1wvsqkg31d81si"; depends=[glue htmltools jsonlite]; }; algorithmia = derive2 { name="algorithmia"; version="0.3.0"; sha256="1ccmcsyxncyv8k0fjvr5y44amygqi7qx2dy6rsy3a5pw281hllr4"; depends=[base64enc httr rjson]; }; aliases2entrez = derive2 { name="aliases2entrez"; version="0.1.2"; sha256="11myzwvmagnj35qrrxr35hklzv76c0c4h2zl64y3lzzn5rfii0n6"; depends=[AnnotationDbi doParallel foreach limma org_Hs_eg_db RCurl readr]; }; + alien = derive2 { name="alien"; version="1.0.1"; sha256="0856csdvz5wz699n7g8bj1azzyw2mfznhcwmabzp740bijy6x6qi"; depends=[cli dplyr ggplot2 HelpersMG rlang tidyr]; }; align = derive2 { name="align"; version="0.1.0"; sha256="1r411yvsgzfywamsjz3j5pim0qjfa7rmhdkhd3sj8lp1xh98jhy9"; depends=[matlab]; }; alkahest = derive2 { name="alkahest"; version="1.1.1"; sha256="1wbdhvak4984rdglsx2h7wwazxkvz2wv93lnizw7b4dm8aqrnapg"; depends=[]; }; allMT = derive2 { name="allMT"; version="0.1.0"; sha256="0d34w0gl369mq512x3h2nsrvd13ahy36p5hdyvz5gnpdlaql64c6"; depends=[dplyr ggplot2 htmlTable plyr readxl reshape2 rio scales stringr survival survminer tibble]; }; - allcontributors = derive2 { name="allcontributors"; version="0.1.1"; sha256="0s8az7wz8rx74i6rlinl8l0l90hzql10hxqlxm281irsczhjm7ga"; depends=[cli clipr curl gert gh gitcreds httr2 magrittr]; }; + allcontributors = derive2 { name="allcontributors"; version="0.2.0"; sha256="043li7wdm3m66k69ijjmak53pk8f6q3a89snncv36g82zwbpfvpp"; depends=[cli clipr curl gert gh gitcreds httr2 magrittr]; }; alleHap = derive2 { name="alleHap"; version="0.9.9"; sha256="1fqrw645s3f5363p7jl3dzy8xphxdr1v6wdsjmqcqwpgvjqfr2zz"; depends=[abind]; }; - allelematch = derive2 { name="allelematch"; version="2.5.3"; sha256="1gr0s2zfc4i61bxz1prq9p2lyq17h10vzp0mkq2z6c2rfzqfhazc"; depends=[dynamicTreeCut]; }; + allelematch = derive2 { name="allelematch"; version="2.5.4"; sha256="1zzx9ilxh99grjl2dmzmby0kh9rgd1h2x1hvsaxvxxmnahdsprm2"; depends=[dynamicTreeCut]; }; allestimates = derive2 { name="allestimates"; version="0.2.3"; sha256="1gjkry5v1mrb11zd3r9z9cj6aasrhj29yihpizqphbb463qima3a"; depends=[broom dplyr ggplot2 stringr survival tidyr]; }; - allofus = derive2 { name="allofus"; version="1.0.0"; sha256="03i9naibrcwyk7735q3khabbh7rrwm7gz0ffsmd9k50hfzkbs0a0"; depends=[bigrquery cli dbplyr dplyr glue magrittr purrr rlang sessioninfo tidyr]; }; - allometric = derive2 { name="allometric"; version="2.1.0"; sha256="15g9xyyiipg602s465kc082h7mlpwjfg6p9g2ba6n9ahhvcrhma7"; depends=[curl dplyr ISOcodes jsonlite magrittr openssl progress purrr RefManageR rlang stringr tibble tidyr units vctrs]; }; + allofus = derive2 { name="allofus"; version="1.1.0"; sha256="0lxds215ar26z28jv5kxp61vhg0yy73q7xj0dbdkiqnqhq7z8dhd"; depends=[bigrquery bit64 cli DBI dbplyr dplyr glue lifecycle magrittr purrr rlang sessioninfo stringr tidyr]; }; allomr = derive2 { name="allomr"; version="0.3.0"; sha256="0bsvg4n8yql7241q6dfgki2lnd5kdivjg31lzllca8xfzrfxcvn1"; depends=[]; }; alluvial = derive2 { name="alluvial"; version="0.1-2"; sha256="039frwrsxq1lb97s7vf2vbyyadimkigs628ymym06fxka53drdkp"; depends=[]; }; almanac = derive2 { name="almanac"; version="1.0.0"; sha256="03954ylzqj34kkkz74ffa3i1kbby2vy0gxmbqd4gcw6qa646fq79"; depends=[cli glue lifecycle lubridate magrittr R6 rlang V8 vctrs]; }; - alone = derive2 { name="alone"; version="0.3"; sha256="15ivqnnpn96x2pg83mswagqb0qaymafphc7awzik14vbg7k9pk9j"; depends=[]; }; + alone = derive2 { name="alone"; version="0.4"; sha256="1smfn3b1lcbccsi41548pr6yyld9nh74apxp54yad5ga20r68462"; depends=[]; }; alookr = derive2 { name="alookr"; version="0.3.9"; sha256="13lvbfgqb6ivrik1jcbfz3zn6p41aqwq68bk9ric3xnyjnczc5wg"; depends=[caTools cli dlookr dplyr future ggmosaic ggplot2 glmnet MASS MLmetrics parallelly party purrr randomForest ranger rlang ROCR rpart tibble tidyr tidyselect xgboost]; }; aloom = derive2 { name="aloom"; version="0.1.1"; sha256="0n5vqp9hhdhy092yg93ldm2ii1l5pz30r7m2iwpjck0s92jjrhda"; depends=[glmnet randomForest]; }; alpaca = derive2 { name="alpaca"; version="0.3.4"; sha256="1fqw8fcahpgdkj25pd6pq4isd0yrdpiypl3q9ir79a56pvjcn8a4"; depends=[data_table Formula MASS Rcpp RcppArmadillo]; }; @@ -6401,27 +6522,27 @@ in with self; { amen = derive2 { name="amen"; version="1.4.5"; sha256="0nqgb25y8zmmas3i1abzv3w5m4cnxjsdqcqxxrhngj3ajz4dmyc7"; depends=[]; }; amerifluxr = derive2 { name="amerifluxr"; version="1.0.0"; sha256="099vv1axgp4jfi9ic4rqsdcv8a5dz1z0zdmdx8r8h474p3jdqm7c"; depends=[heatmaply httr jsonlite memoise RCurl readxl]; }; amerika = derive2 { name="amerika"; version="0.1.0"; sha256="1c0bi0wrc89d0zv0wzmdvka66mcikgi1w4gn1i22mvg5bivhzaqx"; depends=[]; }; - ami = derive2 { name="ami"; version="0.1.0"; sha256="0j3k4q1vm2nv108r1k0dr8ps4hxql9l9gnqmvd5gadladsy7444i"; depends=[curl glue lifecycle rlang rstudioapi]; }; + ami = derive2 { name="ami"; version="0.1.1"; sha256="0gcbwhbk3lzxcp35841pdipbifhk445x2r0ch6999n1y0h7rsca7"; depends=[curl glue lifecycle rlang rstudioapi]; }; ammiBayes = derive2 { name="ammiBayes"; version="1.0-2"; sha256="0mj14n882jcg7p7rldb0d7yndp1dv3vma9g7f7f0vabhwm6d1jkd"; depends=[bayesplot coda distfree_cr Hmisc lattice latticeExtra movMF msm spam]; }; ammistability = derive2 { name="ammistability"; version="0.1.4"; sha256="06hlbpwa0d1grs7k1vfhchrfi9zml76hkn41vnrayv35fx0sl1pz"; depends=[agricolae ggcorrplot ggplot2 mathjaxr Rdpack reshape2]; }; amp = derive2 { name="amp"; version="1.0.0"; sha256="11132s3bdjcldvpws7yc1w4nifvq0iaavdda2zj0wwmi4rw5xx5c"; depends=[dplyr ggplot2 glmnet MASS rlang SuperLearner tidyr]; }; ampd = derive2 { name="ampd"; version="0.2"; sha256="0bi8qngd37n60ym516yjcahxc536vdwm60rq5ld32170hww69j7c"; depends=[]; }; ampir = derive2 { name="ampir"; version="1.1.0"; sha256="0nnsxrnq3m1frrjp3i8bhm67x6xnl0scyb67wxgm5x7b187svhfj"; depends=[caret kernlab Peptides Rcpp]; }; - amt = derive2 { name="amt"; version="0.2.1.0"; sha256="0dw29gpgcqm5v8scwhnvdk1vkq9wqjd9klrxlgigqisnlqg0pgia"; depends=[checkmate circular ctmm data_table dplyr fitdistrplus FNN KernSmooth lubridate MASS purrr Rdpack rlang sf sfheaders survival terra tibble tidyr]; }; + amregtest = derive2 { name="amregtest"; version="1.0.3"; sha256="0c5x95iiqr0fa2ph6zily6qp542yc08vwzgrvfhclmkrn9zjcjap"; depends=[allelematch digest remotes testthat withr]; }; + amt = derive2 { name="amt"; version="0.2.2.0"; sha256="1yx5rvc18ppk37z1m72a1j80ai4b84zc8fh5py2zipvc7phwqfsw"; depends=[checkmate circular ctmm data_table dplyr fitdistrplus FNN KernSmooth lubridate MASS purrr Rdpack rlang sf sfheaders survival terra tibble tidyr]; }; anMC = derive2 { name="anMC"; version="0.2.5"; sha256="0xrby8qyfd3dgi64kllspvalz9yrxjdj5qd1fqjdl6qwb3h6rkga"; depends=[mvtnorm Rcpp RcppArmadillo]; }; anabel = derive2 { name="anabel"; version="3.0.1"; sha256="0m6jkbl3mf3kpaq9yj0qrbwcvgd1qrdakc14xcnd8awgvbqh6z01"; depends=[cli dplyr ggplot2 kableExtra minpack_lm openxlsx progress purrr qpdf reshape2 rlang tidyr]; }; anacor = derive2 { name="anacor"; version="1.1-4"; sha256="0wf9kb8389gc9jy32dr8ap78lychgjnd19jix7wzln4yx78ypqnq"; depends=[car colorspace fda]; }; analogsea = derive2 { name="analogsea"; version="1.0.7.2"; sha256="146n6z06nr3jyni8mg8gjb7r4w06mrpkfmpg8l8z6rw9aw1gh73p"; depends=[httr jsonlite magrittr yaml]; }; analogue = derive2 { name="analogue"; version="0.17-6"; sha256="0c5h8nnbflydv35ja1pfhyx7ifwlriwgcnrmxj5il5lvcr70y1vi"; depends=[brglm lattice MASS mgcv princurve vegan]; }; analyzer = derive2 { name="analyzer"; version="1.0.1"; sha256="1729dnghdca7dr4l5cxazg68ipkm63mvk2danwm3bva62sza29p6"; depends=[dplyr ggplot2 gridExtra]; }; - anapuce = derive2 { name="anapuce"; version="2.3"; sha256="05k3ypy4dc8q4jv0by37k66pdwb1wmsd24i6nciris5knfdy9csg"; depends=[]; }; and = derive2 { name="and"; version="0.1.5"; sha256="1i95ap4yba5c5ygwsvwmqb3am4r5agv7yhls7ji7pnly8nkrknyn"; depends=[glue rlang]; }; andrews = derive2 { name="andrews"; version="1.1.2"; sha256="18z8g1g5kx3cmgx4rc4rd35d557yl30xxmr2g2nkdd714w2asqra"; depends=[gmp]; }; andurinha = derive2 { name="andurinha"; version="0.0.2"; sha256="1cpz16zv3al6lmsqsb7dl5v6kml2a0hg084rbmwa4wsyk5ygl8bm"; depends=[cowplot ggplot2 plyr rlang signal tidyr]; }; anesrake = derive2 { name="anesrake"; version="0.80"; sha256="1p2g51w80jiadlf4asbnsw46asarzlzr5c1yfhdb31ymqxd7p76q"; depends=[Hmisc weights]; }; angstroms = derive2 { name="angstroms"; version="0.0.1"; sha256="1k8q4pkb5vcjfp2n2dga3q2ydmdxv020k5qzrb6w01ixrgf15d8l"; depends=[nabor ncdf4 proj4 raster sp spbabel]; }; aniDom = derive2 { name="aniDom"; version="0.1.5"; sha256="04gqq6ibmr7zq8p9cbpxj98afq7yz82gp7prwbq2ymbxnkywwpgq"; depends=[rptR]; }; - aniSNA = derive2 { name="aniSNA"; version="1.1.0"; sha256="0vmpdmqr3cwpk588y116bv2nv1xcaya0mg53zcl3yc223df134zp"; depends=[dplyr ggplot2 igraph lubridate magrittr plotrix Rcpp reshape rlang stringr]; }; + aniSNA = derive2 { name="aniSNA"; version="1.1.1"; sha256="1rvrpcw1j5xwz8ns7njvf8blal8nh6c45avy5rpzb5kifiv8yxgy"; depends=[dplyr ggplot2 igraph lubridate magrittr plotrix Rcpp reshape rlang stringr]; }; anim_plots = derive2 { name="anim.plots"; version="0.2.2"; sha256="0j786k5kkc1d33q52ki6fp3hnddjv7fv3ss6zjm9hqqgkq34vwqh"; depends=[animation]; }; animalEKF = derive2 { name="animalEKF"; version="1.2"; sha256="1qhmgwmg9nw8hcsd8gkvk0h8rmk82zkqjyd94a1d79cwmryxls9b"; depends=[bezier colorspace deldir ellipse ggplot2 HDInterval MASS Matrix MCMCpack mvtnorm plyr png rlang sf shiny sp]; }; animate = derive2 { name="animate"; version="0.3.9.4"; sha256="1pzgxz3xdp7c1swd5sxzlpyvvqv3shw8dxnbjwv1cr5g406p8970"; depends=[base64enc glue httpuv jsonlite R_utils R6]; }; @@ -6440,13 +6561,13 @@ in with self; { anomaly = derive2 { name="anomaly"; version="4.3.2"; sha256="1w0bc5147rqsakiz3cs37xcd27i2b5ni1dva2kxv8l17ma0519v3"; depends=[BH cowplot dplyr ggplot2 Rcpp Rdpack tidyr xts zoo]; }; anovir = derive2 { name="anovir"; version="0.1.0"; sha256="1x7lvj7xchbv6siyc9miivmf0rlxrjflal4icyvbxgdr285s2s9w"; depends=[bbmle]; }; anscombiser = derive2 { name="anscombiser"; version="1.1.0"; sha256="1hakvxgc50zshi5kplg90r0499mihhwvhhz7bshndjxxci1ashkl"; depends=[]; }; - antaresEditObject = derive2 { name="antaresEditObject"; version="0.6.1"; sha256="0ll4vql2lnhp3dlhq1i91yzr24cpkzbnlnarqri931h53pb3sa5d"; depends=[antaresRead assertthat cli data_table doFuture doParallel future httr jsonlite memuse pbapply plyr progressr whisker yaml]; }; + antaresEditObject = derive2 { name="antaresEditObject"; version="0.7.0"; sha256="1v9lhaw2cs4ggfpwi1zdlganks3xrnlsycziv0h3zi5zg45mar7v"; depends=[antaresRead assertthat cli data_table doFuture doParallel future httr jsonlite lifecycle memuse pbapply plyr progressr whisker yaml]; }; antaresProcessing = derive2 { name="antaresProcessing"; version="0.18.1"; sha256="1dlq850xqh9534ws88ma3vv5r79cbabn6r6a2jmicxx116s7wjrz"; depends=[antaresRead data_table]; }; - antaresRead = derive2 { name="antaresRead"; version="2.6.0"; sha256="1rlgkq8nna6zs7i5czj1wbcyzng5bj9w7mijz5yy80mf5qd6x2v3"; depends=[bit64 data_table doParallel httr jsonlite lubridate memuse pbapply plyr purrr shiny stringi stringr]; }; + antaresRead = derive2 { name="antaresRead"; version="2.7.0"; sha256="0rgb2glphf6f4vw1hrjxm1f2lhdsx1zag6r0bqgvmzkqipvp97zk"; depends=[bit64 data_table doParallel httr jsonlite lifecycle lubridate memuse pbapply plyr purrr shiny stringi stringr]; }; antaresViz = derive2 { name="antaresViz"; version="0.18.0"; sha256="1lffsxv8fy3yq6rx6520rizp9f74d8bd78by5n209yr9yhw1629r"; depends=[antaresProcessing antaresRead assertthat data_table dygraphs geojsonio htmltools htmlwidgets leaflet leaflet_minicharts lubridate manipulateWidget plotly rAmCharts sf shiny sp spMaps webshot]; }; anthro = derive2 { name="anthro"; version="1.0.1"; sha256="0vp55q0f9d4gljwzfzr07f80q5ip59imvklfw8gg1rjw83yaqpxr"; depends=[survey]; }; anthroplus = derive2 { name="anthroplus"; version="0.9.0"; sha256="1wnj2idgdnh2gdw34x40adijf2sxp3k72j45pqqxg4aqc1wrvvv1"; depends=[anthro]; }; - anticlust = derive2 { name="anticlust"; version="0.8.1"; sha256="1dsb9bvbg78gxrpxiddnm8diym8k0fsdgykk35icf6ww6krzzymx"; depends=[Matrix RANN]; }; + anticlust = derive2 { name="anticlust"; version="0.8.5"; sha256="1y3mb8l9p5dh843i2k6b5j0yvq1kvykax6fxavcacsa55lfcl3y2"; depends=[Matrix RANN]; }; antitrust = derive2 { name="antitrust"; version="0.99.26"; sha256="172y87vnifxbs4n06v3qvwlxnl3fxhfp9cp1qzm4agcvqh1j7rxz"; depends=[BB numDeriv]; }; antiword = derive2 { name="antiword"; version="1.3.3"; sha256="1cc355sldhsbpx9wl5hkx0ydkgd3racxhkrriv58yw5xbb3b18ff"; depends=[sys]; }; anyLib = derive2 { name="anyLib"; version="1.0.5"; sha256="1x9x58hhkkwdskmgdjv94ynh811n9w0752hh4214adl1qpn576vm"; depends=[BiocManager curl devtools httr withr]; }; @@ -6459,36 +6580,36 @@ in with self; { aoos = derive2 { name="aoos"; version="0.5.0"; sha256="0y92vs27i0mkpjdclqzq4j9g1axkymhi3v8xp1v6hazh35yzjkfj"; depends=[magrittr roxygen2]; }; aopdata = derive2 { name="aopdata"; version="1.0.3"; sha256="13i8fjvqx42jslgyl271cbnpmsxqxmkrs5hiaxr5i8srrq55d60m"; depends=[checkmate curl data_table httr sf]; }; aoristic = derive2 { name="aoristic"; version="1.1.1"; sha256="1zanf21qmnjmwzzccpdm1bwnyhv9zqjirrylfwmbpkzlmvp0a4pb"; depends=[dplyr ggplot2 lubridate openxlsx plyr scales tidyr]; }; - aorsf = derive2 { name="aorsf"; version="0.1.3"; sha256="1qb0yfwhmk0mhszr1xvgihgh9cp01wan4dbn4wna28xd3ffyb8fv"; depends=[collapse data_table lifecycle R6 Rcpp RcppArmadillo]; }; + aorsf = derive2 { name="aorsf"; version="0.1.5"; sha256="1a69kiji309c2anp0nqdb7n77zlbsl0aibiiazjw6zflwf8fff4l"; depends=[collapse data_table lifecycle R6 Rcpp RcppArmadillo]; }; aos = derive2 { name="aos"; version="0.1.0"; sha256="0nkl7dkqjfp4ahwmn3vs0akx6x2brf0m5gzzzx6pf54j1qwypbhf"; depends=[htmltools jsonlite]; }; apa = derive2 { name="apa"; version="0.3.4"; sha256="0w4cqb9fviz6k4b9cj31sgizqmrkxjr9hjdb8ap32ylzr9dw6gy0"; depends=[dplyr magrittr MBESS purrr rmarkdown stringr tibble]; }; apaTables = derive2 { name="apaTables"; version="2.0.8"; sha256="0jy6x0z9ivqqkjihqhyg3fxyghqa9gs6q2bpxzjdnbcb3kq151vd"; depends=[boot broom car dplyr MBESS tibble]; }; apaText = derive2 { name="apaText"; version="0.1.7"; sha256="1y3kwm6kldryqw9jb2dikvijmqxwxpkp4pw64c9pqshxjjnwfqiq"; depends=[cocor dplyr]; }; - apache_sedona = derive2 { name="apache.sedona"; version="1.5.1"; sha256="1lcbvdw27za5g44i62a5w2pa4z319nfcircz9s46cni13yzng0hq"; depends=[cli dbplyr lifecycle rlang sparklyr]; }; + apache_sedona = derive2 { name="apache.sedona"; version="1.6.0"; sha256="1n5qcjhcb801sjm6yanqvlxqicc2sxlsk4g5qyf1w3zc38cbz0kx"; depends=[cli dbplyr lifecycle rlang sparklyr]; }; apc = derive2 { name="apc"; version="2.0.0"; sha256="0vh6iyxm46k8sfa1xgz0y6m619snnm8s072kml5qgiiw5s7bqnpq"; depends=[AER car ChainLadder ggplot2 ISLR lattice lmtest plm plyr reshape survey]; }; - apcf = derive2 { name="apcf"; version="0.3.0"; sha256="194w409gz052a8gcsdn3v68sqjcwrhb1ck712nljd0iy1mgdz6cs"; depends=[Rcpp wk]; }; - apcluster = derive2 { name="apcluster"; version="1.4.11"; sha256="0crk7skivcmlvr0njsbd8dksj5wa6qlvdp99ay5b2b40cs3xm5s4"; depends=[Matrix Rcpp]; }; + apcf = derive2 { name="apcf"; version="0.3.1"; sha256="0vf41nmw4i9idygxji27ij2qrmkfw5c5pxax0wrnwqhkib9wvqrp"; depends=[Rcpp wk]; }; + apcluster = derive2 { name="apcluster"; version="1.4.13"; sha256="19x1sma5pli5jl0v92c6x7jbqkigz7waaghaxi29kvvx8am5p5sy"; depends=[Matrix Rcpp]; }; apdesign = derive2 { name="apdesign"; version="1.0.0"; sha256="041zyd7ih9nnj92jj9vb9ya1ij9lmj1dzx64q74vyiadw1ix5l66"; depends=[Matrix]; }; - ape = derive2 { name="ape"; version="5.7-1"; sha256="0yh5wl7nydhwwc82h6yr8wcacc2f791pp05w8fg65anq309cf2cb"; depends=[digest lattice nlme Rcpp]; }; - apercu = derive2 { name="apercu"; version="0.2.4"; sha256="046gf4dzypl6mmq7xqkyrdasq9rsjxzsii7w4nxkbn4c40kh7bf7"; depends=[pls]; }; + ape = derive2 { name="ape"; version="5.8"; sha256="092dx0x763r6ch6pp4c4fkmnq5alrq0527p72w1wdg71g6cp5ki4"; depends=[digest lattice nlme Rcpp]; }; + apercu = derive2 { name="apercu"; version="0.2.5"; sha256="1i6ca2dhbn9cykcvhdv5dbvg84b8dr6am7xhlihmy7dfjybbzi3b"; depends=[pls]; }; apex = derive2 { name="apex"; version="1.0.6"; sha256="1cz51g7s4xfr7fvjq0cc9iwy9sb3wwdfrblcjr9pacj09bk2myh7"; depends=[adegenet ape phangorn]; }; - apexcharter = derive2 { name="apexcharter"; version="0.4.2"; sha256="1ykppskq8dvn1jnw6mgcx5ja00gqxq6kvhnw9qdsgmv2fppwbvy6"; depends=[ggplot2 htmltools htmlwidgets jsonlite magrittr rlang shiny]; }; + apexcharter = derive2 { name="apexcharter"; version="0.4.3"; sha256="0g5bg6py5a9fwqm2qsqwn6r9xcij11s4xccf6cimrx74ly4h5lff"; depends=[ggplot2 htmltools htmlwidgets jsonlite magrittr rlang shiny]; }; aphid = derive2 { name="aphid"; version="1.3.5"; sha256="1pwr1i3wxh0l24cqp59q6n59p21v81fmgxkb4jmf50a3ggb1lcdj"; depends=[kmer openssl Rcpp]; }; aphylo = derive2 { name="aphylo"; version="0.3-3"; sha256="1blvj2mz1pdsypxak78pmck097ryzaz24y4flzs5k5djqxgpjwnm"; depends=[ape coda fmcmc MASS Matrix Rcpp xml2]; }; api2lm = derive2 { name="api2lm"; version="0.2"; sha256="05g0lc2cz596hh0876600lfj9d69jqcc3r3f163knn7gqlbbxs6h"; depends=[]; }; apisensr = derive2 { name="apisensr"; version="1.0.0"; sha256="00mfmqck521wgx26az57ynmbj8j3c1vxykpqpwg17591s1jw5796"; depends=[attempt config episensr ggplot2 ggraph glue golem htmltools igraph rhandsontable rmarkdown shiny shinyjs shinymaterial]; }; aplore3 = derive2 { name="aplore3"; version="0.9"; sha256="0af6klscsxvh4amp519b6r41bzysf61p040fj4l5706bbya1arhw"; depends=[]; }; - aplot = derive2 { name="aplot"; version="0.2.2"; sha256="094bzrcjybs2dk2plmxf80mbx9dz1hi5m7gp8bbs5qqh03xn7wf7"; depends=[ggfun ggplot2 ggplotify magrittr patchwork]; }; + aplot = derive2 { name="aplot"; version="0.2.3"; sha256="0shd66q2hagddc0nd96lljin0nyqwp1qq4b485r3z4wr042n5c0z"; depends=[ggfun ggplot2 ggplotify magrittr patchwork]; }; aplotExtra = derive2 { name="aplotExtra"; version="0.0.2"; sha256="0sh3c78p37kn00hkps5ai3aqz391wwpbck2rar4rdvwclg4818my"; depends=[aplot dplyr forcats ggfun ggplot2 ggstar maftools purrr rlang tibble tidyr yulab_utils]; }; aplpack = derive2 { name="aplpack"; version="1.3.5"; sha256="0kv6sbw8832hlfc6164bfvg1ga4hkfw4c7i11dlz7mbhrw2vqm24"; depends=[]; }; apmx = derive2 { name="apmx"; version="1.1.1"; sha256="0i9296dvlzmaxhkp3rj2irxyjmlaazl6abcbgkc2izfn29l2d8nm"; depends=[arsenal dplyr flextable officer purrr this_path tidyr tidyselect]; }; apng = derive2 { name="apng"; version="1.1"; sha256="0g1rs8wdcbqhyjis2r1a4d96jf0486ncnap97yjv08nk574d42wp"; depends=[bitops]; }; - apollo = derive2 { name="apollo"; version="0.3.1"; sha256="0in0d0af3pr61zfd9fvych4vakmsz66clw4zywvy4pqj8v8q3axa"; depends=[bgw cli coda Deriv matrixStats maxLik mnormt mvtnorm numDeriv randtoolbox Rcpp RcppArmadillo RcppEigen RSGHB Rsolnp stringr tibble]; }; + apollo = derive2 { name="apollo"; version="0.3.3"; sha256="0mlvizr7kf308y431vkdf04p64srkgd7hwbypkw68yz37r1k13za"; depends=[bgw cli coda Deriv matrixStats maxLik mnormt mvtnorm numDeriv randtoolbox Rcpp RcppArmadillo RcppEigen RSGHB Rsolnp stringr tibble]; }; appRiori = derive2 { name="appRiori"; version="0.0.5"; sha256="1phy2v2dxk4gdzx1m2a3gghcwyb7iaj0csybpvpk3vl99difkfxd"; depends=[dplyr DT hypr markdown MASS pracma rhandsontable shiny shinythemes sortable stringr]; }; appeears = derive2 { name="appeears"; version="1.1"; sha256="1igrbp6mgflgxn9f63d738zzhgsdsvlgwbgidlbqy82v4i4q326p"; depends=[geojsonio getPass httr jsonlite keyring memoise R6 rstudioapi sf]; }; appleadsR = derive2 { name="appleadsR"; version="0.1.0"; sha256="19xkzykk6zdbswdkfix9nqnfgab4r9c21rqwpma1r6fjapsp81jf"; depends=[jsonlite]; }; appler = derive2 { name="appler"; version="0.2.1"; sha256="0y0nj8ac6cm1qvbzy2w93j638s0f4mj2b1b9g2rw046rrf7maiz4"; depends=[httr jsonlite rvest]; }; - applicable = derive2 { name="applicable"; version="0.1.0"; sha256="1n81aa5by0fd47wjksdl0zpzf0w4vgrns6iqv5i9lqs7g64zggs0"; depends=[dplyr ggplot2 glue hardhat Matrix proxyC purrr rlang tibble tidyr tidyselect]; }; + applicable = derive2 { name="applicable"; version="0.1.1"; sha256="0n459qg3lv088f9yjym33nqi6ahq8whdbc2f0p5m1srvzbqka3mq"; depends=[dplyr ggplot2 glue hardhat Matrix proxyC purrr rlang tibble tidyr tidyselect]; }; appnn = derive2 { name="appnn"; version="1.0-0"; sha256="0wkpr6lcd68wlzk6n622ab7sd99l837073czn4k56hw8bw9v68j3"; depends=[]; }; apportion = derive2 { name="apportion"; version="0.0.1"; sha256="0z8b9qsxsnwy6kmkns6cgri55mvnhsfkwwmljhlp26l93m3llabc"; depends=[]; }; approxOT = derive2 { name="approxOT"; version="1.1.1"; sha256="1l0grr9158d0lscnxd191h3vbal93sl25r982c5w32iyajcjn71h"; depends=[BH Rcpp RcppCGAL RcppEigen]; }; @@ -6498,10 +6619,10 @@ in with self; { appsheet = derive2 { name="appsheet"; version="0.1.0"; sha256="1csf5p9vmm0bn2kycs6ad7jzcw6c2ck6yimr7lb9nb58820s4g2f"; depends=[cli httr2 magrittr purrr rlang tibble]; }; aprean3 = derive2 { name="aprean3"; version="1.0.1"; sha256="17rnq02sncl6rzwyln10200s43b8z1s2j0kdi9kgcb6qr51v12rv"; depends=[]; }; aprof = derive2 { name="aprof"; version="0.4.1"; sha256="14qclp88j4ygd4vrxxpgy2s9939wcajjsqycdzpvn64ws29sdpvh"; depends=[testthat]; }; - apsimx = derive2 { name="apsimx"; version="2.6.2"; sha256="0wmgyfrpyiqsqvb5avrakai244wnnq8w0w0njqv16g0wcq3kfff4"; depends=[DBI jsonlite knitr RSQLite xml2]; }; + apsimx = derive2 { name="apsimx"; version="2.7.7"; sha256="18q9lynfy0y7abp2zlclp75xcixd022m9hqqaqjh6z7wy9z3rxbs"; depends=[DBI jsonlite knitr RSQLite xml2]; }; apt = derive2 { name="apt"; version="3.0"; sha256="14njvpf6q34nffm3r9gqcszlabzbydsxqj0ln9nk4mv59izp8sqm"; depends=[car erer urca]; }; apyramid = derive2 { name="apyramid"; version="0.1.3"; sha256="0i1wkqnf1n5x7y7i116gr7y215aibklcnhb7rm76g8wm7241y3vk"; depends=[dplyr forcats ggplot2 glue rlang scales tidyselect]; }; - aqp = derive2 { name="aqp"; version="2.0.2"; sha256="103fbjb60ny5sarp9ixd2d40kp6j57hhn8f7s83jm3frl5vpb64g"; depends=[cluster data_table farver lattice sp stringr]; }; + aqp = derive2 { name="aqp"; version="2.0.3"; sha256="1rpa1zhcl5j8zl3hj8pb68vzyggdmbgnl9ss3vz3z7z57hsrngc2"; depends=[cluster data_table farver lattice sp stringr]; }; aquodom = derive2 { name="aquodom"; version="0.1.1"; sha256="11w3qf1fwa5gqbiwfq23hrw8k009xbn8rwdb5fgckykyc49lhqbk"; depends=[cachem dplyr glue httr lubridate magrittr memoise openxlsx readr rlang stringr tibble]; }; ar_matrix = derive2 { name="ar.matrix"; version="0.1.0"; sha256="1d531hkl50szfa1q0zbp8dp1a9jli63kwvxjgc9n0ar279y47qdz"; depends=[MASS Matrix sp sparseMVN]; }; arabic2kansuji = derive2 { name="arabic2kansuji"; version="0.1.3"; sha256="1f8ca7hwbn3vl44xrvpfb5n11rv4sbhv2ksg88kx7rk7hik5rbdi"; depends=[purrr stringr]; }; @@ -6510,17 +6631,19 @@ in with self; { arc = derive2 { name="arc"; version="1.4"; sha256="0wlp6c2mbsa5fygc4iy0ixgqz49zzcz2mr66sapy1nm0wri1dvdr"; depends=[arules discretization Matrix R_utils]; }; arcgeocoder = derive2 { name="arcgeocoder"; version="0.2.0"; sha256="02bzhdz8k5c65rzx9dkwxw5v69wq8nbsxk6c6lf2v9wqhq705krp"; depends=[dplyr jsonlite]; }; arcgis = derive2 { name="arcgis"; version="0.1.0"; sha256="0vgixd9pv312h9c2afrslrmzh2jcx4r17iki15x8i9zhhgq5dw7y"; depends=[arcgislayers arcgisutils cli httr2]; }; + arcgisgeocode = derive2 { name="arcgisgeocode"; version="0.1.0"; sha256="0fz4gk6yml6scycrdw1fyhvrs63hp0k8li2yjym037kb91qc8b0p"; depends=[arcgisutils cli curl httr2 jsonify RcppSimdJson rlang sf]; }; arcgislayers = derive2 { name="arcgislayers"; version="0.2.0"; sha256="0micx725r6ln7i0xnrw4543qfrynvjqhg8081vi4falj2zbniz48"; depends=[arcgisutils cli httr2 jsonify lifecycle RcppSimdJson rlang sf terra]; }; - arcgisutils = derive2 { name="arcgisutils"; version="0.2.0"; sha256="05kx133vs99vfb69vp06vhmkg6fd3lqxw1cha30sd6annaylrsyq"; depends=[cli dbplyr httr2 jsonify Rcpp RcppSimdJson rlang sf]; }; + arcgisplaces = derive2 { name="arcgisplaces"; version="0.1.0"; sha256="09xfwahdqf8v772g7gxalgzyd77diwzy6snlfjsrnli4f0svlzwi"; depends=[arcgisutils cli httr2 rlang wk]; }; + arcgisutils = derive2 { name="arcgisutils"; version="0.3.0"; sha256="0553xmamgcaswnjyq0ayyfgvwl1kijrq0jan80m23kgydgi46hkv"; depends=[cli dbplyr httr2 RcppSimdJson rlang sf]; }; archdata = derive2 { name="archdata"; version="1.2-1"; sha256="1dahfl9xdnqiwzdrff98x23k1dl19sfdqnv7jlg1xzgvhj1fhk0d"; depends=[]; }; archeoViz = derive2 { name="archeoViz"; version="1.3.4"; sha256="12hrj059gavzydzywdn6knzyh75d5q34mi16a9jmbf2i3bm4fj5s"; depends=[cxhull ggplot2 htmlwidgets knitr mgcv plotly reshape2 shiny shinythemes svglite]; }; archeofrag = derive2 { name="archeofrag"; version="0.8.2"; sha256="1xnfb4midmjlhq2x8mv6r0mrjbm529xnfm8y0q9wll73igg696yl"; depends=[igraph]; }; - archetypal = derive2 { name="archetypal"; version="1.3.0"; sha256="0xih81gwfwr1x9671gpzw49v95hmnl497hahxsyvdla87n1bfpc3"; depends=[doParallel entropy geometry inflection lpSolve Matrix plot3D]; }; + archetypal = derive2 { name="archetypal"; version="1.3.1"; sha256="1acz5fz5azhz3kq8zsxpp8k04jh2jmvlx0phcwlvvzhr0xs8lln3"; depends=[doParallel entropy geometry inflection lpSolve Matrix plot3D]; }; archetyper = derive2 { name="archetyper"; version="0.1.0"; sha256="1d4vz7kj7n5j81fwfxvr47if8c7fdycci6n33wf8paac0v2paqli"; depends=[bannerCommenter config feather here knitr log4r ps readr rmarkdown skimr snakecase stringr testthat tidyverse]; }; archetypes = derive2 { name="archetypes"; version="2.2-0.1"; sha256="0ibxsr173ib77gjhid91m85s8gjii4mi2w3d52q5301igv20p7r0"; depends=[modeltools nnls]; }; archiDART = derive2 { name="archiDART"; version="3.4"; sha256="1wvjlg2rwy39czf3qqh9igk9rmk9i7pxa9yl5x9yqmsagwd1av3n"; depends=[geometry gtools sp XML]; }; - archive = derive2 { name="archive"; version="1.1.7"; sha256="0z3xw07164knwcnhvrqs83ilihydhi11lia0nx0ckyyl0a9xdvqi"; depends=[cli cpp11 glue rlang tibble]; }; - archiveRetriever = derive2 { name="archiveRetriever"; version="0.3.1"; sha256="0y01am255i682iaj55aiza6arlb0whqhamd09nqjrnwy4hmkbidq"; depends=[anytime dplyr ggplot2 gridExtra httr jsonlite lubridate rvest stringr tibble tidyr xml2]; }; + archive = derive2 { name="archive"; version="1.1.8"; sha256="1ia4i59iadfvbndynk6pysnrs575s1b58gf1gpbxqra2sf0niskm"; depends=[cli glue rlang tibble]; }; + archiveRetriever = derive2 { name="archiveRetriever"; version="0.4.0"; sha256="0zjb4i39s3xkb05h9smk9lwkap7w8gizs5i3ii1qgz2ahi07pywy"; depends=[anytime dplyr ggplot2 gridExtra httr jsonlite lubridate rvest stringr tibble tidyr xml2]; }; archivist = derive2 { name="archivist"; version="2.3.6"; sha256="0q1qysack30xzxdbvvi56rk7r85hsj4ghls9r70ki7bl3rqwr4c9"; depends=[DBI digest flock httr lubridate magrittr RCurl RSQLite]; }; archivist_github = derive2 { name="archivist.github"; version="0.2.6"; sha256="092fzi505vx9xbk41m86d0isxna42iflp7q2kjiqa6z1ccvim2yx"; depends=[archivist digest git2r httr jsonlite]; }; arcpbf = derive2 { name="arcpbf"; version="0.1.0"; sha256="0mmr5q5j4i9qq8m7ybgjz6m40g0qq0z24cznygrsi01kas11s8qd"; depends=[rlang]; }; @@ -6543,16 +6666,15 @@ in with self; { argonDash = derive2 { name="argonDash"; version="0.2.0"; sha256="1wykr7y5375g1nb18ynybccxmd948xrr0gdwxxqsfjf782vlgd2d"; depends=[argonR htmltools shiny]; }; argonR = derive2 { name="argonR"; version="0.2.0"; sha256="15hlvansqnky9bnq4r7xza3hb1hzylmhz8117wxz9lxa1wiky2is"; depends=[htmltools rstudioapi]; }; argosfilter = derive2 { name="argosfilter"; version="0.70"; sha256="1cqhpq5z807azpc45d00031bhw5q69111jsblyqdp5bg6qinrj9c"; depends=[]; }; - argparse = derive2 { name="argparse"; version="2.2.2"; sha256="0vc59854fxnznjcrzy5kdmnbyk602ml92jk15rxgndfawvsrnb5n"; depends=[findpython jsonlite R6]; }; - argparser = derive2 { name="argparser"; version="0.7.1"; sha256="0xcl0ivsbc4iw8s7027q4cx68j6s5lihbby0xa9pmlv4wjmcvdr6"; depends=[]; }; + argparse = derive2 { name="argparse"; version="2.2.3"; sha256="0x16zp6jh9asyval1kwkxzavwjhx3a47xzlc593kw1hz4bhw8355"; depends=[findpython jsonlite R6]; }; + argparser = derive2 { name="argparser"; version="0.7.2"; sha256="0j9hnbyzbyzclgm4qwyqqkrqcrblxfm190489sgcvr5i7vg2smr8"; depends=[]; }; argus = derive2 { name="argus"; version="0.1.1"; sha256="1qg1nphy7jn92zqx1lqg68l5dhpwa4b5407mkwwrsdy5x2r0x7s2"; depends=[Runuran]; }; ari = derive2 { name="ari"; version="0.3.5"; sha256="03w99c918jp23d0kl26vx4m7xjicpgwl5rhn9d0fsm4kvv7j87li"; depends=[hms progress purrr rmarkdown rvest text2speech tuneR webshot xml2]; }; aricode = derive2 { name="aricode"; version="1.0.3"; sha256="02nrw66jfpzf6dy0zy21sbdjxjc8c11iv9fkjqj5akzb7wskk9qh"; depends=[Matrix Rcpp]; }; arima2 = derive2 { name="arima2"; version="3.1.0"; sha256="0sfg7h7rvvrsa2bjmipvm49cr26imnaf3h53czgkprw4knarx8z3"; depends=[ggplot2]; }; arkdb = derive2 { name="arkdb"; version="0.0.18"; sha256="1zq4nrxi7h265zs10ay95s95s56nkwxfzljvbglj03adsb1fxz6s"; depends=[DBI]; }; arkhe = derive2 { name="arkhe"; version="1.6.0"; sha256="0d6di3a17zjr468prj2bpi1ls0cqg46gks10irn2qdjifwiy6r4z"; depends=[]; }; - arm = derive2 { name="arm"; version="1.13-1"; sha256="0dz9dnsky77da2mc198dr3600kz9vk75z1iihjarnsdrq68a4bf0"; depends=[abind coda lme4 MASS Matrix nlme]; }; - armada = derive2 { name="armada"; version="0.1.0"; sha256="191iwf5y1za3wssawkyi9jcingfqqxcvv88hglpw6j7y3x5f47hf"; depends=[anapuce circlize ClustOfVar ComplexHeatmap doParallel FAMT glmnet impute mvtnorm qvalue VSURF]; }; + arm = derive2 { name="arm"; version="1.14-4"; sha256="1g8732naydqyv5pq1fkyb1i6qddv62jdmn2ys5lbdvx2zq5cnns2"; depends=[abind coda lme4 MASS Matrix nlme]; }; armspp = derive2 { name="armspp"; version="0.0.2"; sha256="098c59hdzr4ly8sx72xkcbjmiz5y65id1slsscwjji1yssb23lqq"; depends=[Rcpp]; }; arnie = derive2 { name="arnie"; version="0.1.2"; sha256="14xkgyfn9zvkbgram15w7qzqc5pl1a8ig66cif7a79najrgd914r"; depends=[]; }; aroma_affymetrix = derive2 { name="aroma.affymetrix"; version="3.2.2"; sha256="0h4w7i7hrkfvlkphxz9c0hbaxz455pzx0sb7y3zvsh9ykr3wkq8q"; depends=[aroma_apd aroma_core future listenv MASS matrixStats R_cache R_devices R_filesets R_methodsS3 R_oo R_utils]; }; @@ -6563,18 +6685,19 @@ in with self; { arrApply = derive2 { name="arrApply"; version="2.2"; sha256="0bp30622md9zzdgv9g1kqp5k450cd5yzpqji51wwcjp8l347fb6y"; depends=[Rcpp RcppArmadillo]; }; arrangements = derive2 { name="arrangements"; version="1.1.9"; sha256="0nrlyxgn6667l2rb1q5rvps1anld9aq88qqr3ch2i6zchnqxrdg9"; depends=[gmp R6]; }; arrayhelpers = derive2 { name="arrayhelpers"; version="1.1-0"; sha256="02rl530qxi1idiqpmzg5wr9vl5c7phizhpj64k5pn8xq9zfxbpaz"; depends=[svUnit]; }; - arrow = derive2 { name="arrow"; version="15.0.1"; sha256="070pp0p5h1ij7pg34l5grrx4vwfihagnvnk4kj7l3w0gh8y88ibz"; depends=[assertthat bit64 cpp11 glue purrr R6 rlang tidyselect vctrs]; }; - ars = derive2 { name="ars"; version="0.6"; sha256="0zs1rk3i7pc9wcvxrvjcls194mfbvmkz7cb6pwd1cm3fzjwsyxsp"; depends=[]; }; + arrow = derive2 { name="arrow"; version="16.1.0"; sha256="1vz7vjm8j1k1ng2za3y1qdsrzhbx2p6zy48vsas6bkdywxp5ihb6"; depends=[assertthat bit64 cpp11 glue purrr R6 rlang tidyselect vctrs]; }; + arrowheadr = derive2 { name="arrowheadr"; version="1.0.1"; sha256="19xya0p6nnw62s43cvv6bcjdm1nffil37192g586jxnkqwlw23bj"; depends=[bezier purrr]; }; + ars = derive2 { name="ars"; version="0.7"; sha256="03hgbyg667d0c22am5r45g6p6l5fii3x760khajjjcy8y0mqrq11"; depends=[]; }; arse = derive2 { name="arse"; version="1.0.0"; sha256="0ssaalc058m09gfcr1n0s729rx2plia3zkhlynj67drclyvhyb0i"; depends=[dplyr pracma]; }; arsenal = derive2 { name="arsenal"; version="3.6.3"; sha256="0qvs3ld28djnjnggdhqjwq8sbv8zz322qahlvf7dnx35yqf6xkms"; depends=[knitr]; }; artfima = derive2 { name="artfima"; version="1.5"; sha256="1nqsq9fsqk9kag9n7i2r9yvf578nkdfrkkv7qy8650prka0jca2p"; depends=[gsl ltsa]; }; arthistory = derive2 { name="arthistory"; version="0.1.0"; sha256="01jw0r3pmwwrs5cb31pjyf5cygnfqzyim2dw45lqd0yywkmc5y3h"; depends=[]; }; artpack = derive2 { name="artpack"; version="0.1.0"; sha256="124lybfsxy62qdwr14w8w88kn4fylfff6qd2xy07x2g3lncf6497"; depends=[cli dplyr knitr purrr rlang stringr tibble]; }; arules = derive2 { name="arules"; version="1.7-7"; sha256="183isw4sy5gv5fxajiy4pm5p3nfd1pffa4h8sisl2nrw2rig9na2"; depends=[generics Matrix]; }; - arulesCBA = derive2 { name="arulesCBA"; version="1.2.5"; sha256="13p876k3wg84khvzf6kkjpna0l9yjxyq43nh9dnpma7sidq5ldi0"; depends=[arules discretization glmnet Matrix]; }; + arulesCBA = derive2 { name="arulesCBA"; version="1.2.7"; sha256="0d8nfqbk3y4vw5n3xnns2gy9jwj07a1zbaag9n0hmxrcs8m5ml83"; depends=[arules discretization glmnet Matrix]; }; arulesNBMiner = derive2 { name="arulesNBMiner"; version="0.1-8"; sha256="0kqvi7dzq3mrn6cq22gwxh4p54mgfn9s1sd2cfnbw1f9zp078lsn"; depends=[arules rJava]; }; arulesSequences = derive2 { name="arulesSequences"; version="0.2-30"; sha256="1bnsgjjwrp1n5szhlyg3lhrhcz0sgdxsfdilbi5id9jbdkq9632a"; depends=[arules]; }; - arulesViz = derive2 { name="arulesViz"; version="1.5-2"; sha256="0nvaqqc1k1zxzdqmrln1lhiqmrm98kg9rfsga9qf80cpcvxm79x5"; depends=[arules dplyr DT ggplot2 ggraph igraph plotly scatterplot3d seriation tibble tidyr vcd visNetwork]; }; + arulesViz = derive2 { name="arulesViz"; version="1.5.3"; sha256="1alma9fk92y55zrxr1a5ri2gpkn8kp2wbc3i2vqkmwj48za1a29j"; depends=[arules dplyr DT ggplot2 ggraph igraph plotly scatterplot3d seriation tibble tidyr vcd visNetwork]; }; asaur = derive2 { name="asaur"; version="0.50"; sha256="0c1rgic76w3i2xhna7i52lyc0p01s5b1mxyn55gqw6i19v9mq0b3"; depends=[]; }; asbio = derive2 { name="asbio"; version="1.9-7"; sha256="05as9c0x20wyzzysbpr4mabyfbvhy0c0irdndv33j73psish15y2"; depends=[deSolve gWidgets2 gWidgets2tcltk lattice multcompView mvtnorm pixmap plotrix scatterplot3d]; }; ascentTraining = derive2 { name="ascentTraining"; version="1.0.0"; sha256="1dwmr33jc2fp9x51kzlqa4vib7xmzvz9a7qlfgvhxhld2bxlrrgi"; depends=[]; }; @@ -6593,27 +6716,22 @@ in with self; { askgpt = derive2 { name="askgpt"; version="0.1.3"; sha256="1mi42jvnxrm9xhnrps540hmgi3nd3g9g7pjrkcgzmyj58ip98r66"; depends=[callr cli dplyr glue httr2 jsonlite rappdirs rlang]; }; askpass = derive2 { name="askpass"; version="1.2.0"; sha256="1vrcb69gf5hc8rggc9m7wv19crz5mkl7f08cipy0ykckh6bkc8mr"; depends=[sys]; }; aslib = derive2 { name="aslib"; version="0.1.2"; sha256="1hy0ncanc3mb20yrby8s9hd8v2fg3x41vkj0jwl2b8znzl5n5b2n"; depends=[batchtools BBmisc checkmate corrplot data_table ggplot2 llama mlr parallelMap ParamHelpers plyr reshape2 RWeka stringr yaml]; }; + asm = derive2 { name="asm"; version="0.2.0"; sha256="0irxfkhd344jk31lwp6zgvwpgi6v72y6xbpp5q20zj8220ck4ms8"; depends=[fdrtool Iso MASS pracma quantreg]; }; asmbPLS = derive2 { name="asmbPLS"; version="1.0.0"; sha256="08f4128abvy9pdkbdgiqnhm2v7f79lqbzp1132h52zq2n9wzxzmy"; depends=[ggplot2 ggpubr Rcpp RcppArmadillo]; }; asnipe = derive2 { name="asnipe"; version="1.1.17"; sha256="01wv5pi44s2qzn33qcm4404ijqrwmqfrgchd88s7bwmdl47h3d77"; depends=[MASS Matrix]; }; - aspace = derive2 { name="aspace"; version="4.1.0"; sha256="1k6s7wfjxzp3chd33r4449bzpnlb1yizlqmwvmpfbydjw6zcv3lq"; depends=[Hmisc splancs]; }; + aspace = derive2 { name="aspace"; version="4.1.2"; sha256="163fglx1k7z38xqlgmdqgkzf2sp3xqi756iddw7kj06l6f389yx2"; depends=[Hmisc splancs]; }; aspect = derive2 { name="aspect"; version="1.0-6"; sha256="13pb1pslyka706v13b7hdrzzn5bxmj2l5irpd9f1pm1n8a1ivrrl"; depends=[]; }; aspi = derive2 { name="aspi"; version="0.2.0"; sha256="0rhvxw243vvdv3hxa6pi343gcjc2cbxq1jzqirl9k1l4i3897l87"; depends=[]; }; aspline = derive2 { name="aspline"; version="0.2.0"; sha256="1a68x6jvsaxviy2w361f19iqzsdsaf9kcqw5cknf4yz9fvkqhjny"; depends=[dplyr ggplot2 magrittr mgcv Rcpp rlang splines2 tidyr]; }; - asremlPlus = derive2 { name="asremlPlus"; version="4.4.27"; sha256="1xbczpqfa13jsmiavm3r75d2phjg3ziikd3i1700q6fmpbxlfysi"; depends=[dae devtools doParallel dplyr foreach ggplot2 nloptr qqplotr RColorBrewer reshape2 rlang sticky stringr]; }; + asremlPlus = derive2 { name="asremlPlus"; version="4.4.32"; sha256="0javb5hlg007jb30sdv48hqa2yfdjmjr8vpynm6x02npz8kn528d"; depends=[dae devtools doParallel dplyr foreach ggplot2 nloptr qqplotr RColorBrewer reshape2 rlang sticky stringr tryCatchLog]; }; r_assert = derive2 { name="assert"; version="1.0.1"; sha256="0n5l48yb0djl6rdj50p1dslpw3c5kbi15yz6z6rdgic575gjwzdc"; depends=[]; }; assertable = derive2 { name="assertable"; version="0.2.8"; sha256="1cciil1nzxd8gbj49w99jiv077lbpb59vx7bmb4p218aj2h5hqq4"; depends=[data_table]; }; assertions = derive2 { name="assertions"; version="0.1.0"; sha256="18926pk2g0hc4dyzm1ghp69sgj7mdx8vzi1vykyxbk0046sg53wp"; depends=[cli glue rlang]; }; - assertive_base = derive2 { name="assertive.base"; version="0.0-9"; sha256="07m0ddz092bgbl2fn1yk932h0iajdcqkri632477wl5a1q5r3w2b"; depends=[]; }; - assertive_files = derive2 { name="assertive.files"; version="0.0-2"; sha256="02pfz8j5vwcj5kl6zca46894li7lxwnlrr29j922f14ay6kdssmy"; depends=[assertive_base assertive_numbers]; }; - assertive_matrices = derive2 { name="assertive.matrices"; version="0.0-2"; sha256="16sykzcndv6y2d43x6v9n7m95kv76364h39kh10w4z0xw6ksfqil"; depends=[assertive_base]; }; - assertive_models = derive2 { name="assertive.models"; version="0.0-2"; sha256="0bn4j4v5qvb2d672cgri61p8d9v258pmz35y3lvm6b9mdxwdi9mr"; depends=[assertive_base]; }; - assertive_numbers = derive2 { name="assertive.numbers"; version="0.0-2"; sha256="0jc3ss64j4m7bjydhagwwmka5n7c72vpw4kfcch0m5jvkq5qrqds"; depends=[assertive_base]; }; - assertive_sets = derive2 { name="assertive.sets"; version="0.0-3"; sha256="1cqvh2syvh5b6d85h601zjmsdbbf3h8q98ids4dfl4frdshpasc7"; depends=[assertive_base]; }; assertr = derive2 { name="assertr"; version="3.0.1"; sha256="0g7h88kkls6v1nfzbar40y56yv3lkqb7vrcy63xqgc99zcf8k4bc"; depends=[dplyr MASS rlang]; }; assertthat = derive2 { name="assertthat"; version="0.2.1"; sha256="17wy5bdfzg73sg2clisg1k3zyn1adkj59x56m5nwia2k8z67zkw5"; depends=[]; }; - assessor = derive2 { name="assessor"; version="1.0.0"; sha256="16159dwdpbk38319143kmb78fq64zi1szspsn5ijqwvcwyzi88ca"; depends=[MASS tweedie VGAM]; }; + assessor = derive2 { name="assessor"; version="1.1.0"; sha256="1qpa2fd1ajk395x4chmarj6l50m4jaf5951qy1a79ncaa8f8g3x9"; depends=[MASS np tweedie VGAM]; }; assignPOP = derive2 { name="assignPOP"; version="1.3.0"; sha256="0p282yyszjamvzfsrjhy5c4jbfixvf4fafj6k47k2dgpx6wsdrqx"; depends=[caret doParallel e1071 foreach ggplot2 MASS randomForest reshape2 rlang stringr tree]; }; - assignR = derive2 { name="assignR"; version="2.4.0"; sha256="01lsmzqqy56i9b5yyiyd8njs8nl4qznn6h4rkyizcjalch6sy4rl"; depends=[geosphere mvnfast rlang terra]; }; + assignR = derive2 { name="assignR"; version="2.4.1"; sha256="1ml8yk9a8rm05whcygaxha8lrrp0npr50fvsb3pcdikxing1khdm"; depends=[geosphere mvnfast rlang terra]; }; assist = derive2 { name="assist"; version="3.1.9"; sha256="0n2348hld38jg1z8axaqs000qczbwbpq5yq5sshfn9k08p5b1szk"; depends=[lattice nlme]; }; assocInd = derive2 { name="assocInd"; version="1.0.1"; sha256="16yzgvlqbapjhvzm5nw8vfrhh8mp9llnhck4bpgmszyrh93z1ha5"; depends=[]; }; assortnet = derive2 { name="assortnet"; version="0.20"; sha256="15qah885jjiwxrf1bhmbjpsamgylmy8cwjbd3w0di7n8j4zv6gwr"; depends=[]; }; @@ -6622,7 +6740,7 @@ in with self; { aster = derive2 { name="aster"; version="1.1-3"; sha256="1piimmrsvhbps8ld6vjjg82kf8pm5nwl91437dglid802p51pwlm"; depends=[trust]; }; aster2 = derive2 { name="aster2"; version="0.3"; sha256="17d200sg0vn1fj6lb480dhszm70q6ipjldilb3x0jp72hiczakk9"; depends=[Matrix]; }; astroFns = derive2 { name="astroFns"; version="4.2-1"; sha256="0c81q9xddd9m2lhbv7r2aq1w262vjamcv8qg4mgrndww8n6vf8zn"; depends=[]; }; - astrochron = derive2 { name="astrochron"; version="1.2"; sha256="1wkc8314iyhkdg1y9gr1wzqj9h67n3kqq8wiiq9n2xmgly9b40sz"; depends=[doParallel fields foreach IDPmisc iterators multitaper palinsol viridisLite]; }; + astrochron = derive2 { name="astrochron"; version="1.3"; sha256="1vviz16yfqnqkvrb0sb7348a7xqvqi3cfdyxhlksm08g4rr3w8ar"; depends=[doParallel fields foreach IDPmisc iterators multitaper palinsol viridisLite]; }; astrodatR = derive2 { name="astrodatR"; version="0.1"; sha256="00689px4znwmlp6qbj6z2a51b7ylx1yrrjpv6zjkvrwpv6lyj9fw"; depends=[]; }; astsa = derive2 { name="astsa"; version="2.1"; sha256="0rnbacq5vbnlzfssj13ixgkg0d1wixh2m3dcsi66c63wx65rm3d3"; depends=[]; }; asus = derive2 { name="asus"; version="1.5.0"; sha256="05rsbakby0w3xf5zaq5flp4if31x8fnm1l0n1r51ympw4wzzqjh5"; depends=[wavethresh]; }; @@ -6637,7 +6755,7 @@ in with self; { ata = derive2 { name="ata"; version="1.1.1"; sha256="08wcnfkbcq2al5ivdjkrjr8alaz0026992ra3ihyw6sd74mcracx"; depends=[lpSolve]; }; atable = derive2 { name="atable"; version="0.1.14"; sha256="1dyg7zc19518dp3yxgyhcfklkmard9iwjkbnsl6sx5wkyk3s0vin"; depends=[DescTools doBy effsize Hmisc plyr reshape2 settings]; }; atakrig = derive2 { name="atakrig"; version="0.9.8.1"; sha256="0dzqghs2358hqyklvfblil5ww9d5nmx406invlx5fgqy4k0zcyzf"; depends=[doSNOW FNN foreach gstat MASS Rcpp sf snow terra]; }; - atime = derive2 { name="atime"; version="2024.3.5"; sha256="1p4cp24lrmpjfmvcn8a4f5b8w4ci5ibcnhfgkxg9kp373dnxcl4n"; depends=[bench data_table git2r lattice]; }; + atime = derive2 { name="atime"; version="2024.4.23"; sha256="0sh98yvzm4l2zzjsgw6g1hi0valn51lm5jm0c66swy83mgia66ny"; depends=[bench data_table git2r lattice]; }; atlas = derive2 { name="atlas"; version="1.0.0"; sha256="02wm22j40llmdi6z3rzgbc5fpkzmjfq0xar33bypvj1dx1zxygnd"; depends=[httr testthat]; }; atmopt = derive2 { name="atmopt"; version="0.1.0"; sha256="1h79ngq1236gz4w29fs3nj46a3m1x8a28z3xnhc6wn3a46cf8zzi"; depends=[DoE_base gtools hierNet]; }; atom4R = derive2 { name="atom4R"; version="0.3-3"; sha256="08n9apmliwri1vyqwfvyqi7m8b9nj7zpi1vg8gcqlg17skxndm2m"; depends=[httr jsonlite keyring R6 rdflib readr XML zip]; }; @@ -6656,7 +6774,7 @@ in with self; { audit = derive2 { name="audit"; version="0.1-2"; sha256="0c8b94a5am196sbvmjxya7cg4aq6fcxr8c958fxx3jmy9r4hn6s2"; depends=[]; }; auditor = derive2 { name="auditor"; version="1.3.5"; sha256="04fhgz04gl0hjw2vjymhi9pirc82pshlpv8nif8l3zclpgl795lq"; depends=[DALEX ggplot2 ggrepel gridExtra hnp scales]; }; audrex = derive2 { name="audrex"; version="2.0.1"; sha256="1ifijkbqvdjp1si14p80mbqhq7sby8qgzr181agm3da1nkmic3vp"; depends=[fANCOVA ggplot2 imputeTS lubridate Metrics modeest moments narray purrr rBayesianOptimization readr scales stringr tictoc xgboost]; }; - audubon = derive2 { name="audubon"; version="0.5.1"; sha256="17x4pk2anmj5gyf6wdg9n5zyqzbmp9hvj04ngv17jxv5b047pjc9"; depends=[dplyr magrittr Matrix memoise purrr readr rlang stringi V8]; }; + audubon = derive2 { name="audubon"; version="0.5.2"; sha256="1j6v05qal9f6ci1awb5c1vdl59sdp0472kdm5azvjsibic6bi2m8"; depends=[dplyr magrittr Matrix memoise purrr readr rlang stringi V8]; }; augSIMEX = derive2 { name="augSIMEX"; version="3.7.4"; sha256="0620yxqi160ar91shl5macn890zpc60c9nqy4w8i6m7sskv6gl3z"; depends=[Formula MASS nleqslv Rcpp]; }; augmentedRCBD = derive2 { name="augmentedRCBD"; version="0.1.7"; sha256="1gnl6i81m5w7hxi147ycr963sm661xscw0xb6wm9vcr043ddvx3p"; depends=[cli dplyr emmeans flextable ggplot2 mathjaxr moments multcomp multcompView numform officer openxlsx Rdpack reshape2 stringi]; }; auk = derive2 { name="auk"; version="0.7.0"; sha256="055blr0pbhjy0c20xh21pl1cndvxy742hmn4nlddzvd1phknfkzz"; depends=[assertthat countrycode dplyr httr magrittr readr rlang stringi stringr tidyr]; }; @@ -6685,10 +6803,11 @@ in with self; { automagic = derive2 { name="automagic"; version="0.5.1"; sha256="1mmm6kj6mxrn3s4v8ryszkxr9z7bh9cvhin7xjq111fkwly7wjkq"; depends=[dplyr formatR knitr magrittr purrr remotes yaml]; }; automap = derive2 { name="automap"; version="1.1-9"; sha256="0hrsdynjxv0n5n1pbdk05rgrcwfd0g5p9pgdbicx4ljk73nhl1zk"; depends=[ggplot2 gstat lattice reshape sf sp stars]; }; automl = derive2 { name="automl"; version="1.3.2"; sha256="1nrg8q3y6rv69nmnsylg8rps4b4prx46j5a8ljlr24yc34504ck3"; depends=[]; }; - autonewsmd = derive2 { name="autonewsmd"; version="0.0.6"; sha256="08y9cslk506bc2nmrzmzln7927yhdzghsfkkldgx94cm4ly6jagy"; depends=[data_table git2r magrittr R6 rmarkdown]; }; + autonewsmd = derive2 { name="autonewsmd"; version="0.0.8"; sha256="1wax4npyzkxjl1avgg6m275744nnpbv3qk8sbjg0dkqp58cb33lx"; depends=[data_table git2r magrittr quarto R6]; }; autoplotly = derive2 { name="autoplotly"; version="0.1.4"; sha256="1z577jvadgiz028z7x0786d3qhlkrvv9i34xmllizvg94kxv3bl1"; depends=[ggfortify ggplot2 plotly]; }; autoshiny = derive2 { name="autoshiny"; version="0.0.3"; sha256="0hwrsc08lq6zyx869qmiyd0fc83wqfyzx65a3s2j2xnzf4wwzgbq"; depends=[shiny]; }; - autostsm = derive2 { name="autostsm"; version="3.1.4"; sha256="1kmdhm4g981289w4kprxawlr8bx38dgfdc2lyl6ml7xvkbxwvkfd"; depends=[data_table doSNOW foreach forecast ggplot2 ggrepel gridExtra kalmanfilter lmtest lubridate maxLik progress sandwich strucchange]; }; + autostats = derive2 { name="autostats"; version="0.4.1"; sha256="1283m1b5bllzfsilsjkk0sj8l1wsjpvnq1vk7r20gnd8nf6kybmn"; depends=[broom broom_mixed Ckmeans_1d_dp data_table dials dplyr framecleaner ggeasy ggplot2 ggthemes gtools igraph janitor jtools magrittr nnet parsnip party patchwork presenter purrr recipes recosystem rlang rlist rsample stringr tibble tidyr tidyselect tune workflows xgboost yardstick]; }; + autostsm = derive2 { name="autostsm"; version="3.1.5"; sha256="0vaddh04p2sj1j0a55ny4imraplnflcv2dw365cn9r4bgcj8xhh7"; depends=[data_table doSNOW foreach forecast ggplot2 ggrepel gridExtra kalmanfilter lmtest lubridate maxLik progress sandwich strucchange]; }; autothresholdr = derive2 { name="autothresholdr"; version="1.4.2"; sha256="1fkny4i1fpy5fkya52cw4bzpdi236smq4qq23q1zdba3srmpyzsl"; depends=[checkmate ijtiff magrittr purrr Rcpp rlang strex stringr]; }; av = derive2 { name="av"; version="0.9.0"; sha256="0zyp6dh4kl717w68i417byya5j43h44rql11ihi88x47c9dxbirp"; depends=[]; }; available = derive2 { name="available"; version="1.1.0"; sha256="1j6z0zwd7xjk6j6wk74fjq3nhx9gk7ys09i543gakcskmdm59dw4"; depends=[cli clisymbols crayon desc glue jsonlite memoise SnowballC stringdist tibble tidytext yesno]; }; @@ -6697,6 +6816,7 @@ in with self; { avesperu = derive2 { name="avesperu"; version="0.0.2"; sha256="0s92sdxhgc8d5qwv3frig87j4fxnj28kaykrqiqvdgjwjd6yhgbh"; depends=[]; }; avidaR = derive2 { name="avidaR"; version="1.2.0"; sha256="12z2cs5cayj72c6nx5y086m823grcmhq5m24aaqx4qn36lb6cdbb"; depends=[base64enc circlize curl dplyr httr R6 RColorBrewer readr tibble tidyr xml2]; }; avocado = derive2 { name="avocado"; version="0.1.0"; sha256="0qy9ripwydm3f70rpxwk0asc7r25hg8jcbrr4rz8bxs93q1lsz8x"; depends=[]; }; + avotrex = derive2 { name="avotrex"; version="1.2.0"; sha256="013j4av3hwxfh68myfpvxhzs2zsr470x81j90hh8bqmjs3a1wmlf"; depends=[ape doParallel doSNOW dplyr foreach phytools snow stringr tidytree TreeTools]; }; aweSOM = derive2 { name="aweSOM"; version="1.3"; sha256="0nfbn7rgazvc5nljf8i7bwpxy5j0w404bnrvi02k97jvmrra1dyb"; depends=[bslib cluster data_table DT e1071 fields foreign ggplot2 haven htmltools htmlwidgets kernlab kohonen rclipboard RColorBrewer readODS readxl rmarkdown shiny viridis]; }; aweek = derive2 { name="aweek"; version="1.0.3"; sha256="14n1xmargr89mf4n0bdzdwn7qh314a1xg1bid5px762vk0qf4fws"; depends=[]; }; awinR = derive2 { name="awinR"; version="0.1.0"; sha256="09cp9wfb4aslfddlk72n0kawfghyn1fcjya5afjhiffwww5ps3iy"; depends=[jsonlite]; }; @@ -6719,35 +6839,36 @@ in with self; { azlogr = derive2 { name="azlogr"; version="0.0.6"; sha256="1vn1b6sz7gp6pr7m2mspppjxxb9b54rc9am99lsilkg90cv1ba8h"; depends=[caTools digest httr jsonlite logger]; }; azuremlsdk = derive2 { name="azuremlsdk"; version="1.10.0"; sha256="0s64kjrmcdnjdwh5mdm5vxgvrl9ghvfv6bair7qfzz32jlab99m0"; depends=[DT ggplot2 htmltools plyr reticulate rstudioapi servr shiny shinycssloaders]; }; b64 = derive2 { name="b64"; version="0.1.0"; sha256="1zj5zfd5dpzmzzkh2x51qpdfl1dzbimsd83fp8fsr6yh66c66xzq"; depends=[blob cli rlang]; }; + bRacatus = derive2 { name="bRacatus"; version="2.0.0"; sha256="0jz5c1sbnnl5db0iiqh1paq55rwsbpz6srshcf4yf3ki58m3a9sm"; depends=[data_table geojsonio jsonlite plotfunctions raster rgbif rnaturalearth sf sp]; }; bReeze = derive2 { name="bReeze"; version="0.4-4"; sha256="1zx933iaxqp91s41dham2chzf0f4rxs0d1ww564gg352fs3gi1vn"; depends=[lubridate]; }; bSi = derive2 { name="bSi"; version="1.0.0"; sha256="06ncvxf75khbwv5xg399717n3havj2ip0z07wzh9sjzx5irfw42v"; depends=[cowplot dplyr ggplot2 ggpubr tibble tidyr]; }; - bSims = derive2 { name="bSims"; version="0.3-0"; sha256="055hqa5w4gaqz9mms9yj85wg0pgl6xa568nbjxm4qc75rsy91qg5"; depends=[deldir intrval MASS mefa4 pbapply]; }; - bWGR = derive2 { name="bWGR"; version="2.2.6"; sha256="0ly3ll52l3202xczvw7zy5ajkqd7wg0c6g749x6gzv47bisbykmj"; depends=[Matrix Rcpp RcppEigen]; }; + bSims = derive2 { name="bSims"; version="0.3-2"; sha256="1aflarz69rk4dlrp5gmgi6hs6mx0m8xhpp7ppv6m5gsjf8g18iaf"; depends=[deldir intrval MASS mefa4 pbapply]; }; + bWGR = derive2 { name="bWGR"; version="2.2.9"; sha256="02g5dm23diihrgggk1azl8ds2hyrc950swl6rianbh52bbznr58g"; depends=[Matrix Rcpp RcppEigen]; }; baRcodeR = derive2 { name="baRcodeR"; version="0.1.7"; sha256="199cdbwphpz6ds19841s32bm2rjd7b6v484bvaskw94z0d8bcn6w"; depends=[DT miniUI qrcode rstudioapi shiny]; }; - baRulho = derive2 { name="baRulho"; version="1.0.6"; sha256="17g3xs0lxdpbbi52x27r00vfdgxdhjblyy939scm3c5z01fhxxnb"; depends=[fftw pbapply seewave tuneR warbleR]; }; babel = derive2 { name="babel"; version="0.3-0"; sha256="1iwvx69051yhlxbcl6bypvc3mcih0q8bf3i29r3i79356hp12xqa"; depends=[edgeR]; }; babelgene = derive2 { name="babelgene"; version="22.9"; sha256="1ql5r1chl5ajzy9ppcnk755ia3m2a8n08m837dnm2ll3nzf02rnf"; depends=[dplyr rlang]; }; babelmixr2 = derive2 { name="babelmixr2"; version="0.1.2"; sha256="0b6xa7hwx9h5n7z8xw4q7shwpzjf7kf9cfrsy68qvm8mhns0j9x1"; depends=[checkmate cli digest lotri nlmixr2 nlmixr2est nonmem2rx qs Rcpp RcppArmadillo RcppEigen rex rxode2 rxode2parse]; }; babelwhale = derive2 { name="babelwhale"; version="1.2.0"; sha256="0m5q83ykz5w1fsjsk2vyrnv21cg4n075kbvfvw4k22c61p78shdl"; depends=[crayon digest dplyr dynutils fs glue processx purrr]; }; - babsim_hospital = derive2 { name="babsim.hospital"; version="11.8.8"; sha256="03kd9kvqq0jy1f7qjbbmm5zn8w0nqwwdpan64ymyzmsxb59407cj"; depends=[checkmate curl data_table dplyr ggplot2 golem igraph lubridate markovchain padr plyr rvest scales simmer slider SPOT testthat xml2]; }; babynames = derive2 { name="babynames"; version="1.0.1"; sha256="1gcpd6lncqwjz05z98ra6hcc8q966l2594ylkg50avndild89n3h"; depends=[tibble]; }; babynamesIL = derive2 { name="babynamesIL"; version="0.0.2"; sha256="0g8p5afhsh0piip0i8jxd1s52bk4zb1z5bf3chdkcbxr8z0d42f6"; depends=[tibble]; }; bacistool = derive2 { name="bacistool"; version="1.0.0"; sha256="1hby2bmxbc8qgjzgkp2flv89lpzzvg3vr7s98989ayjmv4vgmqaf"; depends=[rjags]; }; backShift = derive2 { name="backShift"; version="0.1.4.3"; sha256="1dhmq51w07vcqlngsb04ip0wqbgqq2xdfdm1w82r082f07ywqb16"; depends=[clue ggplot2 igraph MASS matrixcalc reshape2]; }; - backbone = derive2 { name="backbone"; version="2.1.3"; sha256="1ap95s9156ivywbmzyz1f82qhyj5dy3kn5bg596kqj61dgi6zak0"; depends=[igraph Matrix Rcpp]; }; + backbone = derive2 { name="backbone"; version="2.1.4"; sha256="05b493cfzi85hnczl56d81sc7j5xfwybsmnc4i4q984sw0gpgvll"; depends=[igraph Matrix Rcpp]; }; backpipe = derive2 { name="backpipe"; version="0.2.3"; sha256="12k2cv9x8h0b002m9c8g4vj5a7chp4b8jqz377ia0diqw89dydpm"; depends=[]; }; - backports = derive2 { name="backports"; version="1.4.1"; sha256="0x144hij0rzhrxdq3k5ph8fk7pdgl1avjca25j4mlpmhzdckqp44"; depends=[]; }; + backports = derive2 { name="backports"; version="1.5.0"; sha256="18kwi50bvha6p5jfl833grmhqzi55adnd3glcy4yh18mizdxjghd"; depends=[]; }; backtest = derive2 { name="backtest"; version="0.3-4"; sha256="1s0mf247dz2vvyf4m3sp9xiqhv7xcs4rphyg9gdcy73060sah2ad"; depends=[lattice]; }; bacondecomp = derive2 { name="bacondecomp"; version="0.1.1"; sha256="1sd6pbhmx8vxz5c2cvvadbjy7p15y91gzs3n0ish7h5br1vq8fpm"; depends=[]; }; bacr = derive2 { name="bacr"; version="1.0.1"; sha256="14zr1v4rihx0ra3x0vsb81vsz0g8gzskkdxkg7nhiz835hp2fiy8"; depends=[MCMCpack]; }; badgen = derive2 { name="badgen"; version="1.0.0"; sha256="0gbafiah9bsxjq2av25003d752w5s9bh7syphl58rsr34l57qkja"; depends=[jsonlite V8]; }; - badger = derive2 { name="badger"; version="0.2.3"; sha256="0j7x6r5bv4ccyxwxc4zmq86q7js694smip9vslnwfkfg9mjxiiwa"; depends=[desc dlstats rvcheck usethis]; }; + badger = derive2 { name="badger"; version="0.2.4"; sha256="1d41xcynl2g63mb4qmhkj8hrs193fq7n0ymh6v2ygabn2n6029kc"; depends=[desc dlstats rvcheck usethis]; }; + baf = derive2 { name="baf"; version="0.0.1"; sha256="1zjn6iqxsa0qby285dhn86047gkzz05nknqqj3dw3bcdhsl91gim"; depends=[cli curl dplyr fs glue readr]; }; baffle = derive2 { name="baffle"; version="0.2.2"; sha256="17307jn92sr4gindd9fvaqvk990v40mr77zp2xs0079h85vh8954"; depends=[]; }; bagged_outliertrees = derive2 { name="bagged.outliertrees"; version="1.0.0"; sha256="0fcd54j6vci2yvlb609dck4pwbn54irkdk472cjc965rcw6dz9z7"; depends=[data_table doSNOW dplyr foreach outliertree rlist]; }; baggr = derive2 { name="baggr"; version="0.7.8"; sha256="18faz6b8llzxsrm60bnsanplc8d7knb8cmcz34nyai7i7022061k"; depends=[bayesplot BH crayon forestplot ggplot2 ggplotify ggrepel gridExtra Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders testthat]; }; baguette = derive2 { name="baguette"; version="1.0.2"; sha256="01pxk9angq2yrw3j5c748qhcdq92axpml5lr9cpf74a8hpg6ddjb"; depends=[butcher C50 dials dplyr furrr generics hardhat magrittr parsnip purrr rlang rpart rsample tibble tidyr withr]; }; + bagyo = derive2 { name="bagyo"; version="0.1.1"; sha256="0j3aiqqn1y9hw3ik2jlza3rwsi8rn32i218dd0fffz56k5d5hcdp"; depends=[]; }; bahc = derive2 { name="bahc"; version="0.3.0"; sha256="0yz0v33fhm38ivhr7bvajk9v7wdmhg9qg7ac8r2qr00rns82m6y3"; depends=[fastcluster matrixStats]; }; - bain = derive2 { name="bain"; version="0.2.10"; sha256="1knkz4ndgdvyn47r6r4gj0sqs9s70h4a5d3hjd4l057216drwmah"; depends=[lavaan]; }; + bain = derive2 { name="bain"; version="0.2.11"; sha256="137i13i39i87q7219bpja6a8l762is4sala55hvk2hlmph3qnylc"; depends=[lavaan]; }; baizer = derive2 { name="baizer"; version="0.8.0"; sha256="06f7g71pzc4y2vnc3fj33s1xl6plxrkd2y73xi24pk81lm5wgf9a"; depends=[curl diffobj dplyr magrittr openxlsx purrr readr readxl rematch2 rlang rmarkdown seriation stringr tibble tidyr vctrs]; }; bakR = derive2 { name="bakR"; version="1.0.1"; sha256="070gv5s78381cq8pagggicxx065hab99v2vgvii996b5svs6rjic"; depends=[BH data_table dplyr ggplot2 Hmisc magrittr purrr Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tidyr]; }; bakeoff = derive2 { name="bakeoff"; version="0.2.0"; sha256="0i40vnwgy4db8flfcx23zh5a7mmp4dhckhzayj34smqfmfm5xzkl"; depends=[]; }; @@ -6756,56 +6877,61 @@ in with self; { bama = derive2 { name="bama"; version="1.3.0"; sha256="1ydm9p6msmgi74rhrji2j14qy7cg7fqgg4ffm9rz293k27n5ghnn"; depends=[BH Rcpp RcppArmadillo RcppDist]; }; bambooHR = derive2 { name="bambooHR"; version="0.1.1"; sha256="0d4jw8ymrgi20il0ipszs18a7x7q7xb3jpqmp1zrb5gigvabb9x2"; depends=[cli curl dplyr glue httr janitor jsonlite lubridate magrittr purrr rlang stringr tibble tidyr withr]; }; bamdit = derive2 { name="bamdit"; version="3.4.0"; sha256="0x7dl2f8qg8df07g4k692501rqn3q5zf12npx9zbbbvv7zb23rlf"; depends=[ggExtra ggplot2 gridExtra MASS R2jags rjags]; }; - bamlss = derive2 { name="bamlss"; version="1.2-3"; sha256="1mf78jfzyq3j598w2l5620igzqmmm68d7wd8vvyx4vdikl7bl3zr"; depends=[coda colorspace distributions3 Formula Matrix MBA mgcv mvtnorm sp survival]; }; + bamlss = derive2 { name="bamlss"; version="1.2-4"; sha256="1prx8mw3n9a66s1fk616g12s0wwbxf3239256skys66csd9wzmh8"; depends=[coda colorspace distributions3 Formula Matrix MBA mgcv mvtnorm sp survival]; }; bamm = derive2 { name="bamm"; version="0.4.3"; sha256="1dda2inq8afcp09qwqjfkg572glkw9rpf6c477wcrslkcnlpkc9x"; depends=[animation dplyr furrr future igraph leaflet magrittr Matrix purrr raster Rcpp RcppArmadillo Rdpack RSpectra sp]; }; bamp = derive2 { name="bamp"; version="2.1.3"; sha256="0qzcndjdwbgiwyvc7ikb7jr0n7cmn78v56h5in22j24jjj740l2z"; depends=[abind coda]; }; bandicoot = derive2 { name="bandicoot"; version="1.0.0"; sha256="0vb9cdp3ci00rjqb18l1a6106fbl5w8sjlj8kfs170rccziynnf9"; depends=[cli]; }; bandit = derive2 { name="bandit"; version="0.5.1"; sha256="0zj98x4kwv8fr6j78vg0hzlsjd4w5l4nbazkpxqkn5yyd6g0v9h4"; depends=[boot gam]; }; banditpam = derive2 { name="banditpam"; version="1.0-1"; sha256="05ym5x178rgfvpvqgiv46ly6xnk44d0j74ykdxkzshil7aig1xfk"; depends=[R6 Rcpp RcppArmadillo]; }; bandsfdp = derive2 { name="bandsfdp"; version="1.1.0"; sha256="07w381i8cls1hf1mdl4qy3vxp7xx0czng3fl3bzrbk80mysjf47n"; depends=[]; }; + banffIT = derive2 { name="banffIT"; version="1.0.0"; sha256="0b37j8xg2rg7gisp2m1rqvjfffqj0yfz54bq2fl0wckmgknkz05c"; depends=[crayon dplyr fabR fs lubridate madshapR rlang stringr tidyr]; }; bang = derive2 { name="bang"; version="1.0.3"; sha256="1zgxgpiqszgnmbqb1dd1d3na11bam56fw9qlz1kfxkr0n8pxic0w"; depends=[bayesplot rust]; }; bangladesh = derive2 { name="bangladesh"; version="1.0.0"; sha256="1vjrashph4n8njm6yk8slywmfwxqrvdmb2ybgp23vdxjhk3rlrzl"; depends=[sf tmap]; }; bannerCommenter = derive2 { name="bannerCommenter"; version="1.0.0"; sha256="1i0b3v4n0xylcbrg9i3a28z037m27vjfg61xz2hl99wavn0bsl1j"; depends=[]; }; banter = derive2 { name="banter"; version="0.9.6"; sha256="07gzl06l7iw4czdx3il3p8kl83yw32fxa8cjx1j018z3468m1qyj"; depends=[dplyr ggplot2 gridExtra magrittr randomForest rfPermute rlang swfscMisc tibble tidyr]; }; banxicoR = derive2 { name="banxicoR"; version="0.9.0"; sha256="0vchm2hnqm45fhn8k38rcam4vkazmifcl40390s2r04bgvqr0pnl"; depends=[rvest stringr xml2]; }; + baorista = derive2 { name="baorista"; version="0.1.4"; sha256="1ljqkplhnfxcs0jvmg589x7j00pciqk829vg5gi4c2i69yxd7mc1"; depends=[coda nimble]; }; bapred = derive2 { name="bapred"; version="1.1"; sha256="1pnhq1li0c4pvgvwsaxxzsgbdyjnb96s1hciqanzgbd1d4577lvp"; depends=[affy affyPLM Biobase FNN fuzzyRankTests glmnet lme4 MASS mnormt sva]; }; barcode = derive2 { name="barcode"; version="1.3.0"; sha256="1kk5nwh810l5vix6qzwl28cfi8rk7vc35hv73whk1bkndv2y4qx0"; depends=[lattice]; }; bardr = derive2 { name="bardr"; version="0.0.9"; sha256="02499b3j10j7qq3whz9qijfp3amp0s1ji8qk76c53dsnkj8f9hvs"; depends=[]; }; bark = derive2 { name="bark"; version="1.0.4"; sha256="16bfws2ffcqn848vfa586z3gwjh5jfb2x887pwk05hpyd1ny9cm9"; depends=[]; }; - bartCause = derive2 { name="bartCause"; version="1.0-6"; sha256="00mxj92qpgs26dlj0cabxa6zjvwp4987nxhxgsb0npvb8zjm3sdn"; depends=[dbarts]; }; + bartCause = derive2 { name="bartCause"; version="1.0-8"; sha256="05g6xmlryksbl4812krz3h8kkkz41i58l1q25wcklw4nvafpjc0v"; depends=[dbarts]; }; bartMachine = derive2 { name="bartMachine"; version="1.3.4.1"; sha256="12abi19nd07lvclxpa73ba21sbrll67bbp0a8vz8wnj2ym8542iv"; depends=[bartMachineJARs missForest randomForest rJava]; }; bartMachineJARs = derive2 { name="bartMachineJARs"; version="1.2.1"; sha256="1h71ikmj217wjd1w52qvxf6p3alnqxg1zn43dzhlkhmfyjn20ylz"; depends=[rJava]; }; - bartcs = derive2 { name="bartcs"; version="1.2.1"; sha256="1336v6kzxca7sdb96jizp4fzspqv36y4z9zdf652a5fn0mxb4a6m"; depends=[coda ggcharts ggplot2 invgamma MCMCpack Rcpp rlang rootSolve]; }; + bartMan = derive2 { name="bartMan"; version="0.1.0"; sha256="09pmkqbvgw9l95c36izdmi3h8pjx7vmzmfak2hll4q6npl5fr27x"; depends=[BART bartMachine cli colorspace cowplot dbarts DendSer dplyr ggiraph ggnewscale ggplot2 ggraph gtable igraph patchwork purrr rJava rlang rrapply scales tibble tidybayes tidygraph tidyr tidytreatment]; }; + bartcs = derive2 { name="bartcs"; version="1.2.2"; sha256="0kajw5phkymvkilwb7bf3qdc24h369yvb1zmc49kk6k7bdpbxcrr"; depends=[coda ggcharts ggplot2 invgamma MCMCpack Rcpp rlang rootSolve]; }; basad = derive2 { name="basad"; version="0.3.0"; sha256="0g8zfphwbvxq1ydvsaj0dvidsikrriyi80cam9i3syhx0v20vnir"; depends=[Rcpp RcppEigen rmutil]; }; base_rms = derive2 { name="base.rms"; version="1.0"; sha256="0lsbbcvmq5n3dpqic9qkyr8wdbmagaw32qfdnl0ck5b6ijh2wz0a"; depends=[do rms survival]; }; base64 = derive2 { name="base64"; version="2.0.1"; sha256="1w9m4n29xmj7px8fbmha04vq146bxfqi7ipj1ag09hlm05y6h8jd"; depends=[openssl]; }; base64enc = derive2 { name="base64enc"; version="0.1-3"; sha256="13b89fhg1nx7zds82a0biz847ixphg9byf5zl2cw9kab6s56v1bd"; depends=[]; }; base64url = derive2 { name="base64url"; version="1.4"; sha256="0n1c2b68vza1dh7sk38v6biiwm72c4jpl79kpdg1bsb0hq9qy18x"; depends=[backports]; }; baseballr = derive2 { name="baseballr"; version="1.6.0"; sha256="0qsr6di5y1a3z28rxpzk6k8b5rbnh08pdcjv65qa0fci3yx1i15y"; depends=[cli data_table dplyr ggplot2 glue httr janitor jsonlite lubridate magrittr purrr Rcpp RcppParallel rlang rvest stringr tibble tidyr]; }; + basecamb = derive2 { name="basecamb"; version="1.1.5"; sha256="0jxlh04f3pqxb0ihp8241z91fka4hi3d3g41ya927japps5dpvhr"; depends=[assertthat dplyr Hmisc MASS mice purrr sae survival]; }; basedosdados = derive2 { name="basedosdados"; version="0.2.2"; sha256="18gfk7hivp68mgbgx60qbpcy28ysj4llzwdji5a57rrczwffr6p0"; depends=[bigrquery cli DBI dbplyr dotenv dplyr fs glue httr magrittr purrr readr rlang scales stringr tibble typed writexl]; }; basefun = derive2 { name="basefun"; version="1.1-4"; sha256="1m258ycxc9m2xdpvqzjk0hz3fg3bwbj3z2yx6raf315ws4s2h47f"; depends=[Matrix orthopolynom polynom variables]; }; baseline = derive2 { name="baseline"; version="1.3-5"; sha256="0l0llb3pi89ixkpvfg5vbvwwv3gzldf0g98rrd3vkm7q26rqmmd2"; depends=[limSolve SparseM]; }; - basemaps = derive2 { name="basemaps"; version="0.0.6"; sha256="0dc1pwzipp1rj3xjmgf4h4i01wrm253mrv7v4jhdk8xh9l4ipl5g"; depends=[curl httr magick pbapply sf slippymath stars terra]; }; + basemaps = derive2 { name="basemaps"; version="0.0.7"; sha256="19cw01qs0wmrxcypr71ssbsj5266zgkxsxakig014x1wr592d3v6"; depends=[curl httr magick pbapply sf slippymath stars terra]; }; basemodels = derive2 { name="basemodels"; version="1.1.0"; sha256="07r61bzrpnwwfsxg9szfw6cf5aqsqa5fxz9j448rqlkqlg84r68h"; depends=[]; }; baseq = derive2 { name="baseq"; version="0.1.4"; sha256="012p6xs9dkvpwcqkm9qgnc5v6sg6qhwpcaqxfnwx30fpim99liai"; depends=[]; }; basetheme = derive2 { name="basetheme"; version="0.1.3"; sha256="0g1dsim688zl309svbv29g5ya23x71al4kribmy279vwqiddzl8z"; depends=[]; }; basf = derive2 { name="basf"; version="0.2.0"; sha256="0l3y5p51jic3b8h1jclhhma4myll1g3vsxr8rj0dx1bvjfimkryw"; depends=[raster sf tibble]; }; basicMCMCplots = derive2 { name="basicMCMCplots"; version="0.2.7"; sha256="02lwkbpr9yj5q7l3ing1v47c4ifvwaxn8yyr3b34fral08cgpn9x"; depends=[]; }; - basicdrm = derive2 { name="basicdrm"; version="0.1.0"; sha256="14hf2hjh3nfjmq6d7c1y442fh9kzj6fjk5v5r5kyq5hsgvlhazd6"; depends=[]; }; + basicdrm = derive2 { name="basicdrm"; version="0.3.0"; sha256="130s8h54760lnjh0m2i7pjs9cx2sc6xxjkm3x93727azxzgxpk09"; depends=[]; }; basictabler = derive2 { name="basictabler"; version="1.0.2"; sha256="0d5gpvf3la0fky786z74i8q7il1mmb2prg8y9wslg2gbngnkvkvm"; depends=[dplyr htmltools htmlwidgets R6]; }; basifoR = derive2 { name="basifoR"; version="0.4"; sha256="1clnmb57g7aclgw8ibj92pfixaism0af85w4kn0208nbm75c1kvf"; depends=[curl foreign Hmisc httr measurements RODBC]; }; basket = derive2 { name="basket"; version="0.10.11"; sha256="1kmz53v8k1wyjg33dsf05p57ym2zq3d0f373wp85bnrwx00nfr10"; depends=[cli crayon dplyr foreach GenSA ggplot2 ggraph gridExtra igraph itertools RColorBrewer tibble tidygraph tidyr]; }; - baskexact = derive2 { name="baskexact"; version="1.0.0"; sha256="1mvxcrqs374zkp08kf9wap1zgi80x3ifhjrrr7w1fyhpcji3cf4x"; depends=[arrangements doFuture extraDistr foreach ggplot2 Rcpp RcppArmadillo]; }; + baskexact = derive2 { name="baskexact"; version="1.0.1"; sha256="1825avqbbf8zkk9fps0i450zwl3j0armbnblndl9q954g2wzdhs4"; depends=[arrangements doFuture extraDistr foreach ggplot2 Rcpp RcppArmadillo]; }; + basksim = derive2 { name="basksim"; version="1.0.0"; sha256="1vrav84fqkilmk0ww0gjr6hldxp7fpzgca2062jvrkzbyff05bx9"; depends=[arrangements bhmbasket bmabasket doFuture extraDistr foreach HDInterval progressr]; }; batata = derive2 { name="batata"; version="0.2.1"; sha256="0z3pj37jydidw3lq1yvp1yv1vqbm28nhj0v4kb3n30dl00kd0hmy"; depends=[fs glue jsonlite lubridate purrr remotes]; }; batch = derive2 { name="batch"; version="1.1-5"; sha256="0wdgfvk2i542cqg34ikvzwlix09f2jyjb32a0f4zh9vg9nrywswq"; depends=[]; }; batchmeans = derive2 { name="batchmeans"; version="1.0-4"; sha256="0b2npqxrv08zxj59sahj5s87inhl6dyl10bj01v0l1yr14q5g546"; depends=[]; }; - batchmix = derive2 { name="batchmix"; version="2.1.0"; sha256="0afbklw9nslxnqa1264qa4a7igzhmz2irqn4px1n98gsq97d3097"; depends=[ggplot2 Rcpp RcppArmadillo testthat tidyr]; }; + batchmix = derive2 { name="batchmix"; version="2.2.1"; sha256="1vsr4p3a03dx3kr2clzcnyvf6xfzyisfk87famfvssjb4g58bzrv"; depends=[ggplot2 Rcpp RcppArmadillo salso tidyr]; }; batchscr = derive2 { name="batchscr"; version="0.1.0"; sha256="094l2cq7lcdrlsdmsxmbal7srxdg20rxbms46h1sd414wq26d413"; depends=[]; }; batchtma = derive2 { name="batchtma"; version="0.1.6"; sha256="1ii7iiq6vhfqnhzp5xpl40g2gdmm9c7ib3kg8fbswg99f96hqhbp"; depends=[broom dplyr geepack ggplot2 limma magrittr nnet purrr quantreg rlang stringr tibble tidyr]; }; batchtools = derive2 { name="batchtools"; version="0.9.17"; sha256="1rlvfk0279saf930z48g230p9z30dd7qil9aiprjn35px1advqdn"; depends=[backports base64url brew checkmate data_table digest fs progress R6 rappdirs stringi withr]; }; bate = derive2 { name="bate"; version="0.1.0"; sha256="1jrf614g5699ygw73pda7dk79ydx57sc8wpq4vg51yy98arhidc2"; depends=[concaveman dplyr ggplot2 latex2exp magrittr purrr tidyselect vtable]; }; batman = derive2 { name="batman"; version="0.1.0"; sha256="0ccgx506p4iri23k2ikb8jmh04dp08w66785bv52iy8kd359h43f"; depends=[Rcpp]; }; - batsch = derive2 { name="batsch"; version="0.1.0"; sha256="1mjlggjwfi7wrksilkh6nchzg9d6zcnazn2y0a4w6ffl78zdaxv1"; depends=[magrittr tibble]; }; + batsch = derive2 { name="batsch"; version="0.1.1"; sha256="07axa9rrl4r8wf73023v64sc7x700gl5vmsq90gagnfgg06bfqp5"; depends=[tibble]; }; batteryreduction = derive2 { name="batteryreduction"; version="0.1.1"; sha256="0j838q7063bplkzd50kmnxji80cgysfsq7m1qifv8z7a2zsh8c8g"; depends=[pracma]; }; bayMDS = derive2 { name="bayMDS"; version="2.0"; sha256="1l5srpaichn598a3a9pj7pwp35jvbwb65d37l9ngvdq3rja8xm0s"; depends=[ggplot2 ggpubr progress Rcpp RcppArmadillo shiny shinythemes]; }; bayclumpr = derive2 { name="bayclumpr"; version="0.1.0"; sha256="17yppw6m27d1smdbwrl9mja84y3p56s4sjw4c6hklxadcf4na8im"; depends=[deming IsoplotR loo rstan]; }; @@ -6816,17 +6942,19 @@ in with self; { bayesCT = derive2 { name="bayesCT"; version="0.99.3"; sha256="0ragig1x34syhsnbnd58l2s7g23j7fb0cl9wkasvxq8cicw5hqgn"; depends=[bayesDP dplyr magrittr purrr survival]; }; bayesDP = derive2 { name="bayesDP"; version="1.3.6"; sha256="0li063187icw96shrbawfa00vkb42m5y38a4j2aahryajjlsva57"; depends=[ggplot2 MCMCpack Rcpp RcppArmadillo survival]; }; bayesDccGarch = derive2 { name="bayesDccGarch"; version="3.0.4"; sha256="1wv36yv43m8fkpk59hfrw3672p95lzhapr0d4n3jynsfhf6ivpm6"; depends=[coda numDeriv]; }; + bayesEO = derive2 { name="bayesEO"; version="0.2.1"; sha256="0zs4qqf8881x01wblzmnw7m3zmh4ifrim3a8ws454r2lxf4y7mj5"; depends=[dplyr ggplot2 purrr Rcpp RcppArmadillo stars terra tibble tidyr tmap yaml]; }; bayesGAM = derive2 { name="bayesGAM"; version="0.0.2"; sha256="13zs68d26c66hkm8mfhcygk8rw6sdg4rf4a4az254lf2xvypbh5d"; depends=[bayesplot BH boot cluster corrplot geometry ggplot2 gridExtra loo MASS mlbench Rcpp RcppEigen RcppParallel rstan rstantools SemiPar StanHeaders]; }; bayesGARCH = derive2 { name="bayesGARCH"; version="2.1.10"; sha256="1jb7jfyxp210pc8myv9lnwb55hy19d39m10kkhs5lyjwc2lv0401"; depends=[coda mvtnorm]; }; bayesImageS = derive2 { name="bayesImageS"; version="0.6-1"; sha256="0hz6ynvrhsxp097zswdlascza5n27cq4hfaqdc3r8b7crmh7lrim"; depends=[Rcpp RcppArmadillo]; }; bayesLife = derive2 { name="bayesLife"; version="5.2-0"; sha256="116wa3sqxkp8ywc0s83clg1pp81bf1rhddpvjbcw9pyim57h4kxm"; depends=[bayesTFR car coda data_table hett wpp2019]; }; bayesMRM = derive2 { name="bayesMRM"; version="2.4.0"; sha256="1qdc4y0l6v4axp47pnxcnq96hl7kbi9r4jiknd5i934smcr2bsza"; depends=[coda ggplot2 gridExtra rgl rjags shiny shinythemes]; }; + bayesMeanScale = derive2 { name="bayesMeanScale"; version="0.1.4"; sha256="0zkfv6f50z83d8iih2f9p0dkla2bffcfjhfbmpicybicfi35f480"; depends=[bayestestR data_table magrittr posterior]; }; bayesMig = derive2 { name="bayesMig"; version="0.4-6"; sha256="1b4pxg22fx898s529gigdfcdsmzlrpqhpnq96lghvsvmv5802z4n"; depends=[bayesTFR coda truncnorm wpp2019]; }; bayesPO = derive2 { name="bayesPO"; version="0.5.0"; sha256="0dav6kjasb7p0ks8fwd3r8pb7q8il39rmvpbgdb80c7k49azirhd"; depends=[coda Rcpp RcppEigen RcppProgress]; }; bayesPop = derive2 { name="bayesPop"; version="10.0-1"; sha256="0jzxsqnrzvhz85wravjxbjwf6panwmylqgz99b0zknvgbf0vx6zh"; depends=[abind bayesLife bayesTFR data_table fields googleVis MortCast plyr reshape2 rworldmap wpp2012 wpp2019]; }; bayesQR = derive2 { name="bayesQR"; version="2.4"; sha256="1ci81pishhf9iv08gsnyfmx9kq9d4bswfvnwx3whykrkrlgifzmi"; depends=[]; }; - bayesROE = derive2 { name="bayesROE"; version="0.1"; sha256="05darwx45bv6p9qscnw169jza4yd3m2d5bgpr35yil7p68dl0w2b"; depends=[colourpicker config ggplot2 golem scales shiny shinyBS]; }; - bayesRecon = derive2 { name="bayesRecon"; version="0.2.0"; sha256="0nnj97j6i2hp9rldrfz207wmyn8rsyvjc5c14507yl1paayf3l85"; depends=[lpSolve]; }; + bayesROE = derive2 { name="bayesROE"; version="0.2"; sha256="1y5nvvwyhr27268prahjif71y89mbhgyc51gc5nqhmy5d7qwimwj"; depends=[colourpicker config ggplot2 golem scales shiny shinyBS]; }; + bayesRecon = derive2 { name="bayesRecon"; version="0.3.0"; sha256="11gmav4cb89fmlpwg387sik3fllvscgn778c5smwnk5lp5sl430j"; depends=[lpSolve]; }; bayesSurv = derive2 { name="bayesSurv"; version="3.7"; sha256="1mqsnvqrivyl28d5fjh7alqsxr06wnhkjhhhrahmngmvgnmmnd1b"; depends=[coda smoothSurv survival]; }; bayesTFR = derive2 { name="bayesTFR"; version="7.4-2"; sha256="09fbyc4656dil6mqfzx7nlxxp0b95fmc73ibci60jbbzggafb51s"; depends=[coda data_table lifecycle MASS mvtnorm wpp2019]; }; bayesWatch = derive2 { name="bayesWatch"; version="0.1.3"; sha256="04kfx68cq5cjg1ykzl8i55prnw2mvqgnmgbjav5nv2rmh9psny61"; depends=[BDgraph BH CholWishart ess ggplot2 gridExtra Hotelling MASS Matrix Rcpp RcppArmadillo RcppEigen]; }; @@ -6836,13 +6964,12 @@ in with self; { bayesassurance = derive2 { name="bayesassurance"; version="0.1.0"; sha256="0y62q0340j3781f0l9azxdn6k4isj1zds6y50fg38a73pi7mbfbm"; depends=[dplyr ggplot2 MASS mathjaxr pbapply plot3D plotly rlang]; }; bayesbio = derive2 { name="bayesbio"; version="1.0.0"; sha256="08qa4lzkrcwin7n3kzfqfdlnlqahdmjl1lxpdh29n780cgyjfvs0"; depends=[]; }; bayesboot = derive2 { name="bayesboot"; version="0.2.2"; sha256="0976ryd0gbw3kpmxg2qxyp1m2swnrpa86vdhvqrqxp7fcrs8cs2z"; depends=[HDInterval plyr]; }; - bayesbr = derive2 { name="bayesbr"; version="0.0.1.0"; sha256="0zx123xqw2qglwxsnq0jy56kwk6zczslagapij9aj9n5bsifbcmx"; depends=[BH coda dplyr fdrtool Formula ggplot2 loo magrittr Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders stringr tidyr]; }; bayescopulareg = derive2 { name="bayescopulareg"; version="0.1.3"; sha256="0jzj1iwd8g1kpypg6dl3anhay7kjvznfkyzri3sdf538s6vr88m5"; depends=[mvtnorm Rcpp RcppArmadillo RcppDist]; }; bayescount = derive2 { name="bayescount"; version="0.9.99-9"; sha256="1m9rsyxzf76079yzacgg1wqvylqgvmvwag043csaykn1m42kzdm3"; depends=[coda rjags runjags]; }; bayesdfa = derive2 { name="bayesdfa"; version="1.3.3"; sha256="1xmvpkg30nk4sldzy3rp12ivnj4phzdw08hmk5nh5b70mqapvkra"; depends=[BH dplyr ggplot2 loo mgcv Rcpp RcppEigen RcppParallel reshape2 rlang rstan rstantools StanHeaders viridisLite]; }; bayesdistreg = derive2 { name="bayesdistreg"; version="0.1.0"; sha256="04slvxzbqdi2ak3dlw4lfx55rhw28js8yjmvjpy8vvgq39vcx3dq"; depends=[MASS sandwich]; }; bayesforecast = derive2 { name="bayesforecast"; version="1.0.1"; sha256="0wnz6qblm3ib7lpj860s4lhrs4gvmyrmk779r38rybfvxw4xssii"; depends=[astsa bayesplot BH bridgesampling forecast ggplot2 gridExtra loo lubridate MASS prophet Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders zoo]; }; - bayesian = derive2 { name="bayesian"; version="0.0.9"; sha256="0s9mrzmmarjzy6943lkfnf0cjdgxkvk375kmdnxx43wbllx6k0xg"; depends=[brms dplyr parsnip purrr rlang tibble]; }; + bayesian = derive2 { name="bayesian"; version="1.0.1"; sha256="17d08700gwijpzv325pp7pndrz4mv1j1c4hll8s7ry15s1z82fmf"; depends=[brms dplyr parsnip purrr rlang tibble]; }; bayesianETAS = derive2 { name="bayesianETAS"; version="1.0.3"; sha256="0nbif0b6lcik2kh948zg5ska5mvkdsfr0dg8ndnfpscm2mp7y1dg"; depends=[]; }; bayesianVARs = derive2 { name="bayesianVARs"; version="0.1.2"; sha256="05vx1v7znj12b1h1wks7azi2xrwhdzxjljjsshp3x5zmjm5kg169"; depends=[colorspace factorstochvol GIGrvg MASS mvtnorm Rcpp RcppArmadillo RcppProgress scales stochvol]; }; bayeslm = derive2 { name="bayeslm"; version="1.0.1"; sha256="0mnzxzdz456qxfszl8vhnvb1875hxn8b57wi6dhr9g668da2zdin"; depends=[coda Rcpp RcppArmadillo RcppParallel]; }; @@ -6852,14 +6979,14 @@ in with self; { bayesmix = derive2 { name="bayesmix"; version="0.7-6"; sha256="0gzzzgjbz4aw2zrd5grvd1r0zlycxkgyq4hj1mcbwkfs2dd00msk"; depends=[coda rjags]; }; bayesmlogit = derive2 { name="bayesmlogit"; version="1.0.1"; sha256="1958kyagp41ji9xlwr03g6yv4jrd68kzc7g2hm0wgjdrksifmwp8"; depends=[dplyr ggplot2 magrittr]; }; bayesmove = derive2 { name="bayesmove"; version="0.2.1"; sha256="1l6i8qh7l53x0133gjc5jvri4vnnfviq9y3mcr1kfa5j84gfnmsf"; depends=[dplyr dygraphs furrr future ggplot2 leaflet lubridate magrittr MCMCpack progress progressr purrr Rcpp RcppArmadillo rlang sf shiny tictoc tidyr]; }; - bayesnec = derive2 { name="bayesnec"; version="2.1.1.0"; sha256="02ahcaj72r0md6a2pj8ffz42xpv37hsvfixay57rc5sbdbics9gc"; depends=[brms chk dplyr evaluate formula_tools ggplot2 loo purrr rlang tibble tidyr tidyselect]; }; + bayesnec = derive2 { name="bayesnec"; version="2.1.2.0"; sha256="1ja4yl3fqs5cg3n8gn7r7a2shdxkwcshbmy7cyn3l97zsrdw4a3m"; depends=[brms chk dplyr evaluate formula_tools ggplot2 loo purrr rlang tibble tidyr tidyselect]; }; bayesplay = derive2 { name="bayesplay"; version="0.9.3"; sha256="1gc5gfyd03rir3yrjsqj6448wvbw49n6c789hzfqwignk3vjc555"; depends=[gginnards]; }; bayesplot = derive2 { name="bayesplot"; version="1.11.1"; sha256="0c1q1znp9vd0w6l35xa208bgiwr5f2w8j2c97v6ml4z0j5rycwag"; depends=[dplyr ggplot2 ggridges glue posterior reshape2 rlang tibble tidyselect]; }; bayespm = derive2 { name="bayespm"; version="0.2.0"; sha256="0w965fn7qvxq93bb1iiwzzkz6vc5k7gz87xfnwnywsqcm0bj2khb"; depends=[extraDistr ggplot2 gridExtra invgamma rmutil]; }; bayesreg = derive2 { name="bayesreg"; version="1.2"; sha256="0yrx7y39xxmm0z4myj6ma24dkkhgcily5baxr6yf9balgvhd5wf4"; depends=[pgdraw]; }; bayesrules = derive2 { name="bayesrules"; version="0.0.2"; sha256="0a1a1aq91ary985xd0qqc1sgjlyfcrjh7ngzcy4f7j09a7ch3j4b"; depends=[dplyr e1071 ggplot2 groupdata2 janitor magrittr purrr rstanarm]; }; bayess = derive2 { name="bayess"; version="1.6"; sha256="0kqk4mq7q4cp2pgxw6b261fj3kl47a0dx44b7b5siwqv45nzymiz"; depends=[combinat gplots mnormt]; }; - bayest = derive2 { name="bayest"; version="1.4"; sha256="1ax1z5aw0irpr5qmfscvbssrz58ablx0nkl0d9fx51f2g1cwm65n"; depends=[MCMCpack]; }; + bayest = derive2 { name="bayest"; version="1.5"; sha256="1vx0avy5a3ndy76pvgf71hxpmy7g9l0l1lmc4cgczzdmf55lrksa"; depends=[MCMCpack]; }; bayestestR = derive2 { name="bayestestR"; version="0.13.2"; sha256="15xnmjay0s9kgaj25z43cxky4qcjn3gv8yd1x548jzbxzxxma07n"; depends=[datawizard insight]; }; bayesvl = derive2 { name="bayesvl"; version="0.8.5"; sha256="1gb2in8hjiqb3daqz6phn1639i6p2w641kxrm3zh4rm3d6hg6hzr"; depends=[bayesplot bnlearn coda dplyr ggplot2 reshape2 rstan StanHeaders viridis]; }; bayfoxr = derive2 { name="bayfoxr"; version="0.0.1"; sha256="1295296mbjpmd0bg1pfxvyp0az3sry6gsq9ir3l8x64w5a4qrzd5"; depends=[]; }; @@ -6869,16 +6996,19 @@ in with self; { baytrends = derive2 { name="baytrends"; version="2.0.11"; sha256="1kvp17a6q6d59lhpxs702403rp7hsl77l69vs6injrffzpz9si79"; depends=[dataRetrieval digest dplyr fitdistrplus knitr lubridate memoise mgcv pander plyr readxl sessioninfo survival]; }; bazar = derive2 { name="bazar"; version="1.0.11"; sha256="1q2w5pvlb51lzbb5k719sf1lrhffandkfqlcvi2prw4dmq7qjxv9"; depends=[kimisc]; }; bbdetection = derive2 { name="bbdetection"; version="1.0"; sha256="1j6xcbfsrg3wcr1rpddj7ia33szn5bs0wk4mzq42d761clsr5qq8"; depends=[ggplot2 Rcpp xtable zoo]; }; + bbk = derive2 { name="bbk"; version="0.3.0"; sha256="0dhbpc051xs1mz778a56h269ykwnlgh33k4cj88c2mb2rifmw9fa"; depends=[httr2 xml2]; }; bbknnR = derive2 { name="bbknnR"; version="1.1.1"; sha256="0zwsk491pgfr0dxbpkw1zqa4fi4d8j1bdfiridxq6f07aypx8nmg"; depends=[future glmnet magrittr Matrix Rcpp RcppAnnoy reticulate rlang Rtsne Seurat SeuratObject tidytable uwot]; }; bbl = derive2 { name="bbl"; version="1.0.0"; sha256="135i619lliy93dvgb7ymrcdh20y2b1j7s0y6awzcs3w0hbyd8j5z"; depends=[pROC RColorBrewer Rcpp]; }; bbmix = derive2 { name="bbmix"; version="1.0.0"; sha256="088878222dvqmqrg5d4ny3rrpbvjw7npzrk0fmagvhj3z5dvd6la"; depends=[BH data_table R_utils Rcpp RcppEigen rmutil rstan StanHeaders]; }; bbmle = derive2 { name="bbmle"; version="1.0.25.1"; sha256="02xnfmjr5ax5pc69jkxmygkwvb68flrf1x8pxfw0hk7y37w0qanr"; depends=[bdsmatrix lattice MASS Matrix mvtnorm numDeriv]; }; + bbnet = derive2 { name="bbnet"; version="1.0.1"; sha256="1g7hkiz6485200qabnpx31br6ixcr1jwgvzzdznz4qs8nwhswxqf"; depends=[dplyr ggplot2 igraph tibble]; }; bbotk = derive2 { name="bbotk"; version="0.8.0"; sha256="1ggfl1lhvjnnkxib4svqd82agrvjcg1101cbf4g2c0kzgzm1jaj6"; depends=[checkmate data_table lgr mlr3misc paradox R6]; }; bbreg = derive2 { name="bbreg"; version="2.0.2"; sha256="0mi2834v4cvrhvpnzkb4lgkqq993c3c1yzsxdnmny4p6yxw1q547"; depends=[expint Formula pbapply statmod]; }; bbw = derive2 { name="bbw"; version="0.2.0"; sha256="0gycjqn36msa6cl4zdrjv2bpv14xm8m6nsc3rfjm8mw9zjjzrw6g"; depends=[car withr]; }; bc3net = derive2 { name="bc3net"; version="1.0.4"; sha256="15dghd0v1s71h77iw8b49v5h7wcda5mb4540lfyibsdipbashv2h"; depends=[c3net igraph infotheo lattice Matrix]; }; bcROCsurface = derive2 { name="bcROCsurface"; version="1.0-6"; sha256="0g0z4z3dw4mjp4dpa0d6bz46700jibixhlh2jj62z2l7qz5140cy"; depends=[boot nnet Rcpp RcppArmadillo rgl]; }; bcaboot = derive2 { name="bcaboot"; version="0.2-3"; sha256="0b1m4lwi9hwd4xswabzyy2svc91ppiym8bi9f1wj79w5sg2hxpn7"; depends=[]; }; + bcc = derive2 { name="bcc"; version="1.5"; sha256="1wvly81rg5ximrsp01jpl8rn6rkickzfaq3ybp1i8bbcyvdj1d7d"; depends=[]; }; bccp = derive2 { name="bccp"; version="0.5.0"; sha256="0g9yzqzf977rx97c77krdhl7c499r58xcbzx0nihk73143ynf17w"; depends=[pracma]; }; bcdata = derive2 { name="bcdata"; version="0.4.1"; sha256="05izx4bpk60icwnsy4698cm4dyxmmffss59dca8zrrh4i4pql72f"; depends=[cli crul DBI dbplyr dplyr glue jsonlite leaflet leaflet_extras purrr readr readxl rlang sf tibble tidyselect xml2]; }; bcf = derive2 { name="bcf"; version="2.0.2"; sha256="0a7279h7f3v23zbzqkpaxl9s2q1igfc3c5wcjpins8d7nk5hgfj4"; depends=[coda doParallel foreach Hmisc matrixStats Rcpp RcppArmadillo RcppParallel]; }; @@ -6888,7 +7018,7 @@ in with self; { bcmaps = derive2 { name="bcmaps"; version="2.2.0"; sha256="0cpghf8acq7dpmiaw314n1h2aa310513f3qwnl8p74pyr940gwvn"; depends=[bcdata httr jsonlite lifecycle progress rappdirs sf xml2]; }; bcmixed = derive2 { name="bcmixed"; version="0.1.4"; sha256="0am6amk1axfxkxgp9nmfys4fp4snplfncwkzh02im7a6zr3v1m63"; depends=[MASS nlme]; }; bcpa = derive2 { name="bcpa"; version="1.3.2"; sha256="09n4grdz3vvm3744bggxv9qvnjbifh1hj31sc6s7a3189d1zhl4v"; depends=[plyr Rcpp]; }; - bcputility = derive2 { name="bcputility"; version="0.4.0"; sha256="04c53vm920ipn6vwvvncl9bhk4qypng16v1cf1yr8zgs9cyzrlz6"; depends=[data_table sf]; }; + bcputility = derive2 { name="bcputility"; version="0.4.3"; sha256="11wp0llr8wk96ifl93vw1hadrda61zdkmbazp1khimbx0qgr31gx"; depends=[data_table sf]; }; bcrm = derive2 { name="bcrm"; version="0.5.4"; sha256="1j8bfa3x7h77vs41k4nqbqlb961szp1fkhc181wzb3zpbnzmjhhy"; depends=[ggplot2 knitr mvtnorm rlang]; }; bcrypt = derive2 { name="bcrypt"; version="1.1"; sha256="1wwdin8x09y8n8zrwj1ylh5ikcz0v0la4wmrsvbdr61cg336wzx4"; depends=[openssl]; }; bcv = derive2 { name="bcv"; version="1.0.2"; sha256="1fs7pj8lsn96cr1r5bagp9mq869q3pj9k71r7j1xi0i5l06pz90y"; depends=[]; }; @@ -6897,6 +7027,7 @@ in with self; { bdc = derive2 { name="bdc"; version="1.1.4"; sha256="1z79bsg0jz5ffl47sjgxj2bigyhbn76m0kz9sqbzkph7srcc6vpr"; depends=[CoordinateCleaner dplyr DT foreach fs ggplot2 here magrittr purrr qs readr rgnparser rnaturalearth sf stringdist stringi stringr taxadb tibble tidyselect]; }; bde = derive2 { name="bde"; version="1.0.1.1"; sha256="0idawsykqz7ybnnfcs0946wd1q8aaw1xdx2w3zzgjz7faxbvznb9"; depends=[ggplot2 shiny]; }; bdl = derive2 { name="bdl"; version="1.0.5"; sha256="1d55i1pn8pfnv2wcmxxifqbxlni9npv9n3xnjcgfcfhs0ixnz314"; depends=[dplyr ggplot2 ggpubr httr jsonlite magrittr progress purrr randomcoloR sf tibble tidyr tmap tmaptools]; }; + bdlim = derive2 { name="bdlim"; version="0.4.2"; sha256="04qgmanb198abrkqfv4n0fk0zib3nad14s7pz85n4ws0252vk10r"; depends=[BayesLogit dplyr ggplot2 LaplacesDemon tidyr]; }; bdlp = derive2 { name="bdlp"; version="0.9-2"; sha256="14fxwgcn3g6k1cdimgfp6zmsgqi4s7sh6kapnls229qiin2nijjl"; depends=[DBI GenOrd MASS MultiOrd rgl RSQLite stringdist]; }; bdots = derive2 { name="bdots"; version="1.2.5"; sha256="18sciji8xy1s53d7d5q1g5zqdn25wd7w5vyiisigf54sbz13vqg6"; depends=[data_table ggplot2 gridExtra mvtnorm nlme]; }; bdpar = derive2 { name="bdpar"; version="3.1.0"; sha256="063b4wwc476gx1gsb028b0fr5agf1n9ciagl5h28zx7ap3jnxmph"; depends=[digest R6 rlist]; }; @@ -6905,6 +7036,7 @@ in with self; { bdribs = derive2 { name="bdribs"; version="1.0.4"; sha256="19qakmdw3l8vfxkr4p1ydkyfs4cmq37lqzw7l5zx5rdn6zlhqwh4"; depends=[rjags]; }; bdscale = derive2 { name="bdscale"; version="2.0.0"; sha256="1hkkfd69g2bg2y4hicjs6bnw9f0zw74jy0dpadchnzw17lffpms3"; depends=[ggplot2 scales]; }; bdsmatrix = derive2 { name="bdsmatrix"; version="1.3-7"; sha256="08krrd7454ixqv4nq55hgf3djp1pz1vl3ndslsrh2pkdq1d5wl63"; depends=[]; }; + bdsvd = derive2 { name="bdsvd"; version="0.1-0"; sha256="0jpli8mdrjbgcvgvj2rwac49147l7h91n2mbsi89pw7m5ydimvvp"; depends=[irlba]; }; bdvis = derive2 { name="bdvis"; version="0.2.37"; sha256="0mhvc1lbnkbawx3yj9h8h4l6bwawg1dfgyjvllhknyldxy8a7bjk"; depends=[chron ggplot2 lattice maps plotrix plyr sf sqldf taxize treemap]; }; bea_R = derive2 { name="bea.R"; version="1.0.6"; sha256="15pdbwz7av8862bl144n998qk0w9rqwip9m2brdm5hj7id5xdlif"; depends=[chron colorspace data_table DT ggplot2 googleVis gtable htmltools htmlwidgets httpuv httr jsonlite magrittr munsell plyr Rcpp scales shiny shinydashboard stringi stringr xtable yaml]; }; beadplexr = derive2 { name="beadplexr"; version="0.5.0"; sha256="0n07lxwmcqn6hx7bvrqvcy5y98c4x7wbcpjlwyq66imphj711blp"; depends=[cluster dplyr drc fpc ggplot2 mclust purrr rlang tibble tidyr yaml]; }; @@ -6914,8 +7046,9 @@ in with self; { beanz = derive2 { name="beanz"; version="3.1"; sha256="1rv4pil8hfykp35impw980riijwgrqxv9v528w1mmq1gyy25wjhl"; depends=[BH loo Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders survival]; }; bearishTrader = derive2 { name="bearishTrader"; version="1.0.2"; sha256="1w9q66v46ppbic684dp3wv22cykd8fvjznd53w0xp3h0fnzhb5v0"; depends=[]; }; beast = derive2 { name="beast"; version="1.1"; sha256="0ikbnzdzp2lv1nh5mxxanra81v4dl6svg3ywqcqd6wgzri70a4ry"; depends=[RColorBrewer]; }; - beastier = derive2 { name="beastier"; version="2.5"; sha256="0inycswavvp0cpgj86j95djc58fa07kg9n8f281grncjzmj8980b"; depends=[ape beautier phangorn rappdirs readr rJava rlang sessioninfo stringr tibble xml2]; }; - beautier = derive2 { name="beautier"; version="2.6.11"; sha256="1gn6hwlk58sg9jjiqccqaqv8vs0xpk87h4l02kb9j51n3jj5sg38"; depends=[ape purrr rappdirs rlang seqinr stringr]; }; + beastier = derive2 { name="beastier"; version="2.5.1"; sha256="1crdi1pmz7gf75089czvvfi31i67i6z0zak9vdppc9bwyrcj1j7f"; depends=[ape beautier phangorn rappdirs readr rJava rlang sessioninfo stringr tibble xml2]; }; + beautier = derive2 { name="beautier"; version="2.6.12"; sha256="116k8lkbf872db3b377l6ls2pymmdvshyxlijyplph4gvy8y5vgn"; depends=[ape purrr rappdirs rlang seqinr stringr]; }; + beaver = derive2 { name="beaver"; version="1.0.0"; sha256="0l33g09df9vqigfrafwwsi71qrfb2rrnlp7qbx7rjpqi8dspj2rd"; depends=[checkmate dplyr ellipsis fs ggplot2 purrr rjags rlang stringr tibble tidyr yodel]; }; bedr = derive2 { name="bedr"; version="1.0.7"; sha256="0zpqvyjgwyqawxm8qrhcv8zq2b3yxgcqkkc87br29yrl7sjb8h6j"; depends=[data_table R_utils testthat VennDiagram yaml]; }; beepr = derive2 { name="beepr"; version="1.3"; sha256="061sfld23b516jws4llml0a4jsdk4z74rll4z58l2rvahkqsdrfp"; depends=[audio stringr]; }; beeswarm = derive2 { name="beeswarm"; version="0.4.0"; sha256="016mqcbdksialkmap56rprzna9b6cd6896ml9gl2n2h8yjdk7x2i"; depends=[]; }; @@ -6939,16 +7072,17 @@ in with self; { bentcableAR = derive2 { name="bentcableAR"; version="0.3.1"; sha256="1d65xaqz0v2wjm6nxl0lyzjynrgizdvzpj2cqa0nhlczcg6xi62r"; depends=[]; }; benthos = derive2 { name="benthos"; version="1.3-8"; sha256="0pznxnf4wl47wc926diaf4h6x12grc9vxbzd8d4d5j18dp3wvr5z"; depends=[dplyr lazyeval readr]; }; berryFunctions = derive2 { name="berryFunctions"; version="1.22.5"; sha256="1kd1r8ha1dggqmpiiwxvgfk5igshkfaqnkhkrjn7s79xqz2bsq1k"; depends=[abind]; }; + bespatial = derive2 { name="bespatial"; version="0.1.2"; sha256="1sbgi4dcddjwgs4dzwn3zf91kx07kr5vc9dblvijgfasqhpfjv5m"; depends=[belg comat landscapemetrics Rcpp RcppArmadillo terra tibble]; }; bestNormalize = derive2 { name="bestNormalize"; version="1.9.1"; sha256="1lryl23jvf51n7ka58ncwhjglk0zzm18wik962h403j4mph1jjly"; depends=[butcher doParallel doRNG dplyr foreach generics LambertW nortest purrr recipes tibble]; }; bestSDP = derive2 { name="bestSDP"; version="0.1.2"; sha256="1rff6jij9wmlpalzilvid8jvj2pczrchx0yrg0vhy00j64zg6jzs"; depends=[dplyr DT ggplot2 readxl rlist shiny shinyBS shinydashboard shinyjs shinythemes shinyWidgets stringr tidyr]; }; bestglm = derive2 { name="bestglm"; version="0.37.3"; sha256="1zncy958hlwyyxrp6yvq1inq6mpyrbr6cdkf8maijfirr5j8f0ya"; depends=[glmnet grpreg lattice leaps pls]; }; besthr = derive2 { name="besthr"; version="0.3.2"; sha256="0mg1nm014p82n9v5f929rcrpqclqs5kh8hga8gd7h29jqykgirc0"; depends=[dplyr ggplot2 ggridges magrittr patchwork rlang stringr tibble]; }; bestridge = derive2 { name="bestridge"; version="1.0.7"; sha256="10nlk1vrzmgxfia9b3skmg5594ab5s3d64k2awyxybkz2pzz7gb1"; depends=[MASS Matrix pheatmap Rcpp RcppEigen survival]; }; betaBayes = derive2 { name="betaBayes"; version="1.0.1"; sha256="1a7ng6ym47scgj47frrhs76r6ipq6mhgf3ivbg2npqpg7hjcz2ci"; depends=[betareg Rcpp RcppArmadillo]; }; - betaDelta = derive2 { name="betaDelta"; version="1.0.4"; sha256="1590lxqalqg30k9zilmbddp9snig93kjxr8zvba7hlpr2zb1jayy"; depends=[numDeriv]; }; - betaMC = derive2 { name="betaMC"; version="1.3.1"; sha256="0wiccdiaqmza4fgcnyf9z833rnqzrm7shb0xvajcfa8d3vpp92z0"; depends=[]; }; - betaNB = derive2 { name="betaNB"; version="1.0.3"; sha256="0smjygh6z91r798b9sx7mxj1ksm66wf356jw0pfkgwmr7nxk66a7"; depends=[]; }; - betaSandwich = derive2 { name="betaSandwich"; version="1.0.6"; sha256="06jjcl4ajhd1g0n9w2p3wn6pvdwxkv4rwrzbllhr8zggdbnh2j5r"; depends=[]; }; + betaDelta = derive2 { name="betaDelta"; version="1.0.5"; sha256="1d9fdi4bvhqih45iism5mkpqrmfl4mgjhsqkb5jkpyyd3la059y6"; depends=[numDeriv]; }; + betaMC = derive2 { name="betaMC"; version="1.3.2"; sha256="08rw2q8dg51ygmns070qpd1204k9hizpqfzggj542sq2ssgc7byk"; depends=[]; }; + betaNB = derive2 { name="betaNB"; version="1.0.4"; sha256="1qfpp4y3drqh492y7x67jkqbabkqbmsbc2yqvbzc427pd3n9ijs5"; depends=[]; }; + betaSandwich = derive2 { name="betaSandwich"; version="1.0.7"; sha256="0gd6n1xghwhqg981ibb41w2hw3wk5zzr3870wpjbic4k96cnmvyb"; depends=[]; }; betacal = derive2 { name="betacal"; version="0.1.0"; sha256="19wgpgf9yhckl9qx9v24f4yh055wfalphcxwm7lg68px6ap2pxl9"; depends=[]; }; betaclust = derive2 { name="betaclust"; version="1.0.3"; sha256="1w76c7yxgnc98p6lwh5mxrrgv1kk5dgjgp12g0vs25l4fb7advqp"; depends=[doParallel foreach ggplot2 plotly pROC scales]; }; betafunctions = derive2 { name="betafunctions"; version="1.9.0"; sha256="1sm33z8nzbh4savzw3zc81bg9g0n83xfibmd5kklq02h3105d4v4"; depends=[]; }; @@ -6972,17 +7106,17 @@ in with self; { bggum = derive2 { name="bggum"; version="1.0.2"; sha256="04vr9z81awavkhk3lbi8yasmi242lrbnq0pzqp38xlrn5xkf8b1w"; depends=[Rcpp RcppDist]; }; bgmfiles = derive2 { name="bgmfiles"; version="0.0.6"; sha256="10qldfjjq5fx5jrrakdxc8k2pf0vp8ifg18nq56lvx9n28mqigim"; depends=[]; }; bgmm = derive2 { name="bgmm"; version="1.8.5"; sha256="1qng8zlpm5pp2ilny99gxyppmp5dnrada4kmvpyg2ap06i69a9gs"; depends=[car combinat lattice mvtnorm]; }; - bgms = derive2 { name="bgms"; version="0.1.3"; sha256="194xvv80d0vlb03kj36qhp036pyj57ansilkqf4aiwvxg63a5fzg"; depends=[Rcpp RcppProgress Rdpack]; }; + bgms = derive2 { name="bgms"; version="0.1.3.1"; sha256="0ylvr1sbn2mq2cc7lkgf8qfw08qyg2xvcwa29964qwdjl76dl05g"; depends=[Rcpp RcppProgress Rdpack]; }; bgsmtr = derive2 { name="bgsmtr"; version="0.7"; sha256="17706qims9637ppwg0vszkcm6kmvhzyrdihkgigpiv5lknhk2q3m"; depends=[CholWishart coda EDISON glmnet inline LaplacesDemon Matrix matrixcalc miscTools mnormt mvtnorm Rcpp sparseMVN statmod]; }; bgumbel = derive2 { name="bgumbel"; version="0.0.3"; sha256="18k8dy44x49hr4s37hjrq60c3cbw0slc9gjmd8gwcbz4slix2ydk"; depends=[coda MASS MCMCpack quantreg SparseM]; }; - bgw = derive2 { name="bgw"; version="0.1.2"; sha256="0az4n3jh02p0smzfx57mpg8q2yrk63fdpb6qcsbpphkicjmvh8bn"; depends=[]; }; + bgw = derive2 { name="bgw"; version="0.1.3"; sha256="0iw36qifawm5jlsjzv4y4kl228hz4clbgzf02dpxv7579nlnibm7"; depends=[]; }; bhm = derive2 { name="bhm"; version="1.18"; sha256="05gr5qmd6dzfylay60wazi0iyvj9r0xhzdk7jm7wrsrag7i43z1p"; depends=[coda ggplot2 MASS survival]; }; bhmbasket = derive2 { name="bhmbasket"; version="0.9.5"; sha256="1mcgbvlnrmxlxqcjmc7ij7qn3zqfwsmbx2r2facbqrf043hmiipc"; depends=[doRNG foreach R2jags]; }; bhpm = derive2 { name="bhpm"; version="1.7"; sha256="0fhk2gmghibf7la864dzm19bm76525gzbj03vw0y0zwbv9shbpcp"; depends=[coda]; }; biClassify = derive2 { name="biClassify"; version="1.3"; sha256="14z3kmpmlvnkjwpjspajdfx5951cmck4binszzdd7nqbai5f1dwv"; depends=[DAAG expm fields MASS Matrix mvtnorm Rcpp RcppArmadillo]; }; - bib2df = derive2 { name="bib2df"; version="1.1.1"; sha256="0d57883df774qqwpssmly3f1gci32yc5sgwc3x8f2rjih23s1nf6"; depends=[dplyr httr humaniformat stringr]; }; - biblio = derive2 { name="biblio"; version="0.0.8"; sha256="1mp4k4gw8l2fywffkkja7bl2bbgl6bjznac4nva7643hp4pj3ags"; depends=[stringr yamlme]; }; - bibliometrix = derive2 { name="bibliometrix"; version="4.1.4"; sha256="1m0bmafpn4mrk8hi39gsnrvfrqm4s5dmwv453rnkrsg98a2yz0n2"; depends=[bibliometrixData dimensionsR dplyr DT FactoMineR forcats ggplot2 ggrepel igraph Matrix openalexR openxlsx plotly pubmedR readr readxl rscopus shiny SnowballC stringdist stringi tidyr tidytext]; }; + bib2df = derive2 { name="bib2df"; version="1.1.2.0"; sha256="1w7x6jj8x3rv1ms8278jwszj8d4g5b59drs7gdfsrbp1x74npcr1"; depends=[dplyr httr humaniformat stringr]; }; + biblio = derive2 { name="biblio"; version="0.0.10"; sha256="0ml6sh0ki04kqyfixd0cxmxpdxznisifaqnjdshvrvi1yqjq12ih"; depends=[rcrossref stringr yamlme]; }; + bibliometrix = derive2 { name="bibliometrix"; version="4.2.3"; sha256="0amlqzc3ngh4r0gzk4y110kjl79gd4h5b4i6bid19v8q5qi3g3gm"; depends=[bibliometrixData ca dimensionsR dplyr DT forcats ggplot2 ggrepel igraph Matrix openalexR openxlsx plotly pubmedR readr readxl rscopus shiny SnowballC stringdist stringi tidyr tidytext]; }; bibliometrixData = derive2 { name="bibliometrixData"; version="0.3.0"; sha256="0dkg5g9il95w9glzvhjdgp8z30prydspvpz5bb403vaizykwv9kl"; depends=[]; }; biblionetwork = derive2 { name="biblionetwork"; version="0.1.0"; sha256="0nhx9bk7r5l0bvj98clnmwf53ihghf48zai4nj6pcgr2rb69fvjj"; depends=[data_table Rdpack]; }; bibliorefer = derive2 { name="bibliorefer"; version="0.1.0"; sha256="0sqj4gpdlx3ahaxh07jvgaidxa5svi3r014v2mmpmi90qym35fkl"; depends=[]; }; @@ -6991,28 +7125,26 @@ in with self; { bibtex = derive2 { name="bibtex"; version="0.5.1"; sha256="1l9y945qmpla68rx6dnaxc83vmvkw26cw4zzfgfsvi36wsja1hgk"; depends=[backports]; }; biclust = derive2 { name="biclust"; version="2.0.3.1"; sha256="11fcb6z5lzz6yl8hsa8ppr53i8yn8k4m19k55ynznhkw780184c7"; depends=[additivityTests colorspace flexclust ggplot2 lattice MASS tidyr]; }; biclustermd = derive2 { name="biclustermd"; version="0.2.3"; sha256="1knhz96k5giq3d16i3akl5gbxrzx3vxm97cb3ivaw835fr9zrmr5"; depends=[biclust doParallel dplyr foreach ggplot2 magrittr nycflights13 phyclust tidyr]; }; - bidask = derive2 { name="bidask"; version="2.0.2"; sha256="0pk1gc6wssyssjm7hp52mpmqnsk4s02kv205294qzif4qlvxwvq6"; depends=[xts zoo]; }; + bidask = derive2 { name="bidask"; version="2.0.4"; sha256="1sdzn2src3m4w6mjn9v67qyn0g0pzmgbkwqqphnq7pwwy94qd6i3"; depends=[xts zoo]; }; bife = derive2 { name="bife"; version="0.7.2"; sha256="0xikxniwzcv6jc64rgx39hddqchxk6c43h45algssbz2vaxvc4zg"; depends=[data_table Formula Rcpp RcppArmadillo]; }; - bifurcatingr = derive2 { name="bifurcatingr"; version="2.0.0"; sha256="1755976gx723gqy94myvh5ng7bn1qisb3488mgix27af3cmrmjfi"; depends=[fMultivar]; }; - bigBits = derive2 { name="bigBits"; version="1.1"; sha256="0vakcy5ymd4b5mhz5vjbkhp82bikdajh6wag4cgzbl3vdvx85xhf"; depends=[gmp Rmpfr]; }; + bifurcatingr = derive2 { name="bifurcatingr"; version="2.1.0"; sha256="0qk009q0kw8h2j5qkvlpkhcmjw9cac9xqvi1v3r721n7cmx340sx"; depends=[fMultivar]; }; + bigBits = derive2 { name="bigBits"; version="1.2"; sha256="0qrbm4d3rihy7dvc3lvailmarq1n2hs7qv6wqrgjd0pxnz62j7p7"; depends=[gmp Rmpfr]; }; bigD = derive2 { name="bigD"; version="0.2.0"; sha256="0pzzqqazn1nv2b613vzdyhxvr454lyqq8235jydia6r3k86fpadw"; depends=[]; }; - bigDM = derive2 { name="bigDM"; version="0.5.3"; sha256="1hav79f5lw1yh4651j7ag6x9kag1dzpb6damz0xfmqrbpgdbq63a"; depends=[crayon doParallel fastDummies foreach future future_apply geos MASS Matrix RColorBrewer Rdpack rlist sf spatialreg spdep]; }; + bigDM = derive2 { name="bigDM"; version="0.5.4"; sha256="0m1q8b4d20iqamypmalh66gkp0rba8ir2m48k5y9j05wfmshkqc4"; depends=[crayon doParallel fastDummies foreach future future_apply geos MASS Matrix RColorBrewer Rdpack rlist sf spatialreg spdep]; }; bigGP = derive2 { name="bigGP"; version="0.1.8"; sha256="0awsskpdky56llqc7flgwzs6646cvvn8q50x8gj0hkknfm8fs1rz"; depends=[Rmpi]; }; bigMap = derive2 { name="bigMap"; version="2.3.1"; sha256="08c9s5sk672j70d6pnva7z52i4s3knkby06lva9al9n8a3jiwsvz"; depends=[BH bigmemory colorspace RColorBrewer Rcpp RcppArmadillo]; }; bigQF = derive2 { name="bigQF"; version="1.6"; sha256="01qr1cw5v330kkddmgwk4fdlm6msnqcbx1kfzw390yfwq5pr84sy"; depends=[CompQuadForm coxme Matrix svd]; }; bigReg = derive2 { name="bigReg"; version="0.1.5"; sha256="08rpkskvsnmln4583074nxlkjf2qkg61v24c0lbj27rfp2ab0wzw"; depends=[MASS Rcpp RcppArmadillo uuid]; }; bigSurvSGD = derive2 { name="bigSurvSGD"; version="0.0.1"; sha256="08i6hwfr4rpvmxfa0vx8bi2dsa63iasj049ndwfn6zgvai6qaz0s"; depends=[bigmemory doParallel foreach Rcpp survival]; }; bigalgebra = derive2 { name="bigalgebra"; version="1.1.1"; sha256="07xzgddnqxn8l41p79qqsvvg4rj03qdqlr3jhfpnra6c82wlhspw"; depends=[BH bigmemory Rcpp]; }; - biganalytics = derive2 { name="biganalytics"; version="1.1.21"; sha256="19drir6vclzz1ffccvnkxnmiqnwmddiqm7y64pz4j6ifxpc1igfy"; depends=[BH biglm bigmemory foreach Rcpp]; }; + biganalytics = derive2 { name="biganalytics"; version="1.1.22"; sha256="0y9zr4gr31l4q2j78nqyh4svlgsd7f5x8jkhgsflfr6agia77gyh"; depends=[BH biglm bigmemory foreach Rcpp]; }; bigassertr = derive2 { name="bigassertr"; version="0.1.6"; sha256="0bk11jinlc1cvm6aaq9mccs9i328b8s2lbwq63a42fgf1qng103p"; depends=[]; }; bigchess = derive2 { name="bigchess"; version="1.9.1"; sha256="1vdzx185y1agh1xjf7qcfi2s6l7qzm1kx6b2kr3cbz2in88bws3n"; depends=[processx]; }; bigdatadist = derive2 { name="bigdatadist"; version="1.1"; sha256="16gkybwcp9sxqb0iic2fhmc4gndr44ayg14wrfcjvjaj4g5r6xs2"; depends=[FNN MASS pdist rrcov]; }; - bigdist = derive2 { name="bigdist"; version="0.1.4"; sha256="1qfnmhyfadmnnagbhdl4jjrb53i1srszf19idp8fy6bczbjq85yi"; depends=[assertthat bigstatsr furrr proxy]; }; - bigergm = derive2 { name="bigergm"; version="1.1.0"; sha256="19rxm6vfr9gh5k76jfpsyxvk4hl3ir760dhdk1hh2ky2pjsnwd5w"; depends=[cachem doParallel dplyr ergm foreach glue igraph intergraph magrittr Matrix memoise network purrr Rcpp RcppArmadillo readr reticulate rlang statnet_common stringr tibble tidyr]; }; - biglasso = derive2 { name="biglasso"; version="1.5.2"; sha256="12pgd9gpvxmcwmsbqps9pfmbi7y9x8vppa2rpkd88s8i2ll9mfpp"; depends=[BH bigmemory Matrix ncvreg Rcpp RcppArmadillo]; }; + bigergm = derive2 { name="bigergm"; version="1.2.1"; sha256="0x8y7aijidpka117zjc80yvjlxv8cdiwxhqzy0mw33halavm10k8"; depends=[cachem dplyr ergm ergm_multi foreach glue igraph intergraph magrittr Matrix memoise network purrr Rcpp RcppArmadillo readr reticulate rlang statnet_common stringr tidyr]; }; + biglasso = derive2 { name="biglasso"; version="1.6.0"; sha256="165bc1y5byma872yld5y5nxkhyhkfn6h4gfiqv5bkfw5hn77ijlc"; depends=[BH bigmemory Matrix ncvreg Rcpp RcppArmadillo]; }; bigleaf = derive2 { name="bigleaf"; version="0.8.2"; sha256="1xvd1fdycyxb9da34v4ibsjwzipil5cyja3iym30q5cqcbxq47g4"; depends=[robustbase solartime]; }; - biglm = derive2 { name="biglm"; version="0.9-2.1"; sha256="0iy9xr2bq42wlizgwlz7w5kh9206yqkw9h2cr6mcsmizgjg3rkvd"; depends=[DBI]; }; - biglmm = derive2 { name="biglmm"; version="0.9-2"; sha256="1zj1h2hszps3w913j2dk4cyj5jsqkkxsm3pcjlc4jnq810j100l6"; depends=[DBI]; }; + biglm = derive2 { name="biglm"; version="0.9-3"; sha256="0n0dkazq74s3lml0ds9l38kzgapckjrvwyi62qb1y14cqlylhpc0"; depends=[DBI]; }; bigmatch = derive2 { name="bigmatch"; version="0.6.4"; sha256="1a3qiljarnv14dmpr5g2nfxzaf4wmw88md4kjrlrlgxcgmijlwm6"; depends=[liqueueR mvnfast plyr rcbalance]; }; bigmds = derive2 { name="bigmds"; version="3.0.0"; sha256="1pkmzpibmch8zxlp08r460cvszwh4pshi9b8lafmkspj4pdkxlr9"; depends=[corpcor pracma svd]; }; bigmemory = derive2 { name="bigmemory"; version="4.6.4"; sha256="0b80c2nsgphgr3cnvf75a0z3bzqx4q1a4dplq0h2izc71mn5fgzy"; depends=[BH bigmemory_sri Rcpp uuid]; }; @@ -7021,10 +7153,10 @@ in with self; { bigparallelr = derive2 { name="bigparallelr"; version="0.3.2"; sha256="14rkcig4j93c231sfm43331ykmvxjx2fiz5nhblj2rfzkxli4css"; depends=[bigassertr doParallel flock foreach parallelly RhpcBLASctl]; }; bigreadr = derive2 { name="bigreadr"; version="0.2.5"; sha256="15wy5rphk2l59k8fk68a15xsvy8nxj1srnc2c86i7y5ym04a856k"; depends=[bigassertr data_table parallelly Rcpp]; }; bigrquery = derive2 { name="bigrquery"; version="1.5.1"; sha256="0wkm9xka83skq1cnv830q4jnqvwm8rlmns2mj8n692h2y5qxlmna"; depends=[bit64 brio cli clock cpp11 curl DBI gargle httr jsonlite lifecycle prettyunits rapidjsonr rlang tibble]; }; - bigrquerystorage = derive2 { name="bigrquerystorage"; version="1.0.0"; sha256="0gkg82b281gdpfm8cwb2jzs5nd829vd8m91rjlz79lyfkjdi4b27"; depends=[arrow assertthat bigrquery bit64 DBI lifecycle Rcpp rlang tibble]; }; + bigrquerystorage = derive2 { name="bigrquerystorage"; version="1.1.0"; sha256="1idhaf6i7sbrdmzzc0ks76yr47lpl63lcjprsnjzwkyc124nx606"; depends=[arrow assertthat bigrquery bit64 DBI lifecycle Rcpp rlang tibble]; }; bigsimr = derive2 { name="bigsimr"; version="0.12.0"; sha256="1cvj6p5g2g8ldi3g6d1mvhsf8xcsxgqd71frghdqybz6f1vdbs34"; depends=[JuliaCall]; }; bigsnpr = derive2 { name="bigsnpr"; version="1.12.2"; sha256="1xl7456xnid6pvvcppm4297vmgln7f4n15ziz0yfp5i5mqlmafj4"; depends=[bigassertr bigparallelr bigreadr bigsparser bigstatsr bigutilsr data_table doRNG foreach ggplot2 magrittr Matrix Rcpp RcppArmadillo rmio roptim runonce vctrs]; }; - bigsparser = derive2 { name="bigsparser"; version="0.6.1"; sha256="0b6hh1rvi7qnz9kfnckjglcv240inpnc5f50cyrpfq5gdyppzhy1"; depends=[bigassertr Matrix Rcpp RcppEigen rmio]; }; + bigsparser = derive2 { name="bigsparser"; version="0.7.1"; sha256="0ppmv09n5ypm8jhsd580flk4k6p255k7az9k96fzjwjfrn0vmm74"; depends=[bigassertr Matrix Rcpp RcppEigen rmio]; }; bigsplines = derive2 { name="bigsplines"; version="1.1-1"; sha256="1kf04p2lglzdi1fdryk27nmj2a2jca2ii7ki8vak93sq21isb179"; depends=[quadprog]; }; bigstatsr = derive2 { name="bigstatsr"; version="1.5.12"; sha256="1wj169j91yjlb12dzy80q7rvi102l7fhlzfvc93rxifq2w3px9x8"; depends=[bigassertr bigparallelr cowplot foreach ggplot2 ps Rcpp RcppArmadillo rmio RSpectra tibble]; }; bigstep = derive2 { name="bigstep"; version="1.1.1"; sha256="1bppvib57p6m91c2v9w9lgb1k3jg8mk3w2kkbjvwgsdwy4m8fhap"; depends=[bigmemory magrittr matrixStats R_utils RcppEigen speedglm]; }; @@ -7046,7 +7178,7 @@ in with self; { binaryMM = derive2 { name="binaryMM"; version="0.1.1"; sha256="0vjs3in8rih5iinlfcrilpqwqjxkdf01h6giv993zy8l3s28r9yd"; depends=[fastGHQuad MASS Rcpp]; }; binb = derive2 { name="binb"; version="0.0.6"; sha256="0j9iyawkn1mqvf52q1abp0k00r5239rkvvmvl3cmp4jlffxd4xd7"; depends=[knitr rmarkdown]; }; binda = derive2 { name="binda"; version="1.0.4"; sha256="0fgdpdjbw95rwv7l0acfb9cf7s57q5ld2vgdvrv1pxwkyi902nh4"; depends=[entropy]; }; - bindata = derive2 { name="bindata"; version="0.9-20"; sha256="0smym431w755azsawwsdk6412dfj7bz3bdc3mqzam50xard4s94l"; depends=[e1071 mvtnorm]; }; + bindata = derive2 { name="bindata"; version="0.9-21"; sha256="0s1f7jvlr8xjn89ns5kq0wyvcibdvhyaw92pz1p14nbmg8lqky5d"; depends=[e1071 mvtnorm]; }; bindr = derive2 { name="bindr"; version="0.1.1"; sha256="1l05fpk2yql3jka321c0bdgx6mqq9pvfrg2844lbjfpbgjkmqy3w"; depends=[]; }; bindrcpp = derive2 { name="bindrcpp"; version="0.2.3"; sha256="1yn9is89r76ay314s216whr0igych4r78kjz85amhwgfb9wawbb6"; depends=[bindr plogr Rcpp]; }; binequality = derive2 { name="binequality"; version="1.0.4"; sha256="19sm4gk7pnp0aq0bil3acm2jc6w26pkj11vvxzysgs1xlmsra7vg"; depends=[gamlss gamlss_cens gamlss_dist ineq survival]; }; @@ -7076,23 +7208,24 @@ in with self; { bioRad = derive2 { name="bioRad"; version="0.7.3"; sha256="0gschmraqc76yiqdn48cg1qnd0p7b6x7h2gr54a84pb4ivbn6vyy"; depends=[assertthat curl dplyr fields frictionless ggplot2 glue jsonlite lubridate lutz raster readr rhdf5 rlang sp suntools tidyr viridis viridisLite]; }; bioSNR = derive2 { name="bioSNR"; version="1.0"; sha256="19blfbw9d0did76llgffs8dyld8yr6wf4rmxmr2fb4vp1s8m2izc"; depends=[dplyr ggplot2 pracma scales]; }; bioacoustics = derive2 { name="bioacoustics"; version="0.2.8"; sha256="08qhxx7xgswjamrgg82pkg1f7w50dx9ln67d50n1p3rvrxab4061"; depends=[htmltools moments Rcpp stringr tuneR]; }; - bioassays = derive2 { name="bioassays"; version="1.0.1"; sha256="1y32wxkv14l7r0f35y4hxxxh3zpw2gd4hsjmkajhmzmnvg5jdw78"; depends=[dplyr ggplot2 magrittr nplr reshape2 rlang]; }; biobricks = derive2 { name="biobricks"; version="0.2.2"; sha256="0xa6pd7c4sdq4wzn8053drr063cjll7lpg5k3k146zz0z6rczg30"; depends=[]; }; bioclim = derive2 { name="bioclim"; version="0.4.0"; sha256="15a2v5l4ydn2zsnbwkrwpfvcj5xzhwj1diqrr9vp1i42w9ci55h2"; depends=[berryFunctions ggplot2 reshape2 rmarkdown terra]; }; biocompute = derive2 { name="biocompute"; version="1.1.1"; sha256="102n8y83z8568lwil2fb28wrjkymwmw9rzvk0a4zgsx5a3l7wl01"; depends=[cli crayon curl digest httr jsonlite jsonvalidate magrittr rmarkdown stringr uuid yaml]; }; biodosetools = derive2 { name="biodosetools"; version="3.6.1"; sha256="013nqdqrv5h3swzqss2kazsp06wrs57zri3aaidy92wrd6v24bsh"; depends=[bsplus cli config dplyr ggplot2 golem magrittr MASS maxLik mixtools msm rhandsontable rlang rmarkdown shiny shinydashboard shinyWidgets tidyr]; }; biogas = derive2 { name="biogas"; version="1.23.2"; sha256="05g6nyi872skvr34kw5c71ggnnjc3fv95imc327yjqhmqmwx3m19"; depends=[]; }; - biogeom = derive2 { name="biogeom"; version="1.4.2"; sha256="0fbgi2xdld42aprbx2zlyghbq1yn93grw2gc7rargxjf151b990d"; depends=[spatstat_geom]; }; + biogeom = derive2 { name="biogeom"; version="1.4.3"; sha256="0wzj99ldk0654s1a8d1b4q57mahv4mjzndx5bj1hakmsdrwa6q8b"; depends=[spatstat_geom]; }; biogram = derive2 { name="biogram"; version="1.6.3"; sha256="1y7yaa6xwv11b6a4qf4qb3d7rsz0yiiq1k5mb0dbm3avydnl9c4b"; depends=[combinat entropy partitions slam]; }; - biogrowth = derive2 { name="biogrowth"; version="1.0.3"; sha256="0x4x9awqpda76g9hy8d9mw48c07ki2iwlbq5qaa7mw2pp8hg8kh5"; depends=[cowplot deSolve dplyr FME formula_tools ggplot2 lamW lifecycle MASS purrr rlang tibble tidyr]; }; + biogrowth = derive2 { name="biogrowth"; version="1.0.4"; sha256="19czyp7n4ip01psl8hbiihfhj52vdp6nsq0h7cnl7p9h0ax9wcj5"; depends=[cowplot deSolve dplyr FME formula_tools ggplot2 lamW lifecycle MASS purrr rlang tibble tidyr]; }; bioimagetools = derive2 { name="bioimagetools"; version="1.1.8"; sha256="1b7nxjis0p1hiv3w0cr3cyc2xz6sn9qbpssvlp2d7c5gm8x2gnj7"; depends=[EBImage httr tiff]; }; bioinactivation = derive2 { name="bioinactivation"; version="1.2.3"; sha256="0gz1bbakf6b23jsbvrr8314yxajxcr1akm5srgm883lrf1p5ax13"; depends=[deSolve dplyr FME ggplot2 lazyeval MASS purrr rlang]; }; biolink = derive2 { name="biolink"; version="0.1.8"; sha256="03jsvzy6fqbx3w6gs7v1mnznkqwsad3ywdb4wxp0mbaq4vrsandm"; depends=[DBI glue memoise rentrez RMySQL xml2]; }; + biologicalActivityIndices = derive2 { name="biologicalActivityIndices"; version="0.1.0"; sha256="022qip20nwv0xfxnx5507bsa7finnixjshvf60ssnagbchvgwvz9"; depends=[]; }; biomartr = derive2 { name="biomartr"; version="1.0.7"; sha256="0ic6qbk2xmgrcc0xhxyhjafp1xbf2c5dpbqqrbkprrhynr8mq7cx"; depends=[biomaRt Biostrings curl data_table downloader dplyr fs httr jsonlite philentropy purrr R_utils RCurl readr stringr tibble withr XML]; }; - biometryassist = derive2 { name="biometryassist"; version="1.1.3"; sha256="03r14hbc3hllxz5hjraq0ry38899vml6cq71ls8kdn98gi5c6gan"; depends=[agricolae cowplot curl emmeans farver ggplot2 lattice multcompView pracma rlang scales stringi]; }; - biomod2 = derive2 { name="biomod2"; version="4.2-4"; sha256="0ky6wy0gj3vy0bzdvxqzc7gfgb0bshjgzs9r37y902prbl3n70f2"; depends=[abind dplyr earth foreach gbm ggplot2 MASS maxnet mda nnet PresenceAbsence pROC randomForest reshape reshape2 rpart sp terra xgboost]; }; + biometryassist = derive2 { name="biometryassist"; version="1.2.1"; sha256="1gj2lfsi8rnvc61sz70rvii1xhszl84wfvy6lsnwgh26vnj890wf"; depends=[agricolae askpass cowplot curl emmeans farver ggplot2 lattice multcompView pracma rlang scales stringi xml2]; }; + biomod2 = derive2 { name="biomod2"; version="4.2-5-2"; sha256="1rdlkspi0hkgnrc4qs7vgbmcpsf74nzdq8w0akg59bynp0ks8k0w"; depends=[abind dplyr foreach gbm ggplot2 MASS PresenceAbsence pROC reshape reshape2 rpart sp terra]; }; bionetdata = derive2 { name="bionetdata"; version="1.1"; sha256="14ll1m85pcr0xycczk1y9jxiqxfy5daiigfhqn4f6sfk2afy07yr"; depends=[]; }; - bioregion = derive2 { name="bioregion"; version="1.1.0"; sha256="0q7kdgi2nkqgs690n6qiakh0zbvy21nw7a2k7kj3nbr5hk0zlzd6"; depends=[ape bipartite cluster data_table dbscan dynamicTreeCut fastcluster fastkmedoids ggplot2 igraph mathjaxr Matrix Rcpp Rdpack rlang rmarkdown segmented sf tidyr]; }; + biopixR = derive2 { name="biopixR"; version="1.0.0"; sha256="1ab5sqik4pnkq4f3dhf27z5c74jqrj8r95pwz2rdhaagm5ac8iyy"; depends=[cluster data_table imager magick]; }; + bioregion = derive2 { name="bioregion"; version="1.1.1"; sha256="03qjyaw1kiqn9q4wc49rzy6vp83pf5567y07ih4rgp1r3pamnif0"; depends=[ape bipartite cluster data_table dbscan dynamicTreeCut fastcluster fastkmedoids ggplot2 igraph mathjaxr Matrix Rcpp Rdpack rlang rmarkdown segmented sf tidyr]; }; bios2mds = derive2 { name="bios2mds"; version="1.2.3"; sha256="1k0r3fnkzfczx3wp3m8zpndk6gxca7idsp0z13rw84zjrgqaw6jm"; depends=[amap cluster e1071 rgl scales]; }; biosampleR = derive2 { name="biosampleR"; version="1.0.4"; sha256="1cx6as9nvivx5laz029wrbd7jrhl3fhqj0lm1sb65ckx3arm8dwj"; depends=[ggplot2]; }; biosensors_usc = derive2 { name="biosensors.usc"; version="1.0"; sha256="076isyk7dfjpi5db7ghk0hmz2kkdgmrnj3g9ffdnim5gxq3zsf1h"; depends=[energy fda_usc osqp parallelDist Rcpp RcppArmadillo truncnorm]; }; @@ -7102,13 +7235,14 @@ in with self; { biostat3 = derive2 { name="biostat3"; version="0.1.9"; sha256="1pq8w7xh4l1f6z9k9k022a3szhkhsyhrkzdmqqfjhwx2cymcxalp"; depends=[MASS muhaz survival]; }; biotic = derive2 { name="biotic"; version="0.1.2"; sha256="1p18jkdd263dgk90626n9awkj6m4zn1n7897596fzrzrahksa978"; depends=[]; }; biotools = derive2 { name="biotools"; version="4.2"; sha256="1dyy9mk2afjbc8g1qygy6h1aksbhndm53c4sb5mfzriydl03ibxv"; depends=[boot MASS]; }; - bipartite = derive2 { name="bipartite"; version="2.19"; sha256="0a4z5hdsr0j38bzgm7wggn4a8m2zf4fp2f82m20wckx55nvjj64z"; depends=[fields igraph MASS permute sna vegan]; }; - bipartiteD3 = derive2 { name="bipartiteD3"; version="0.3.0"; sha256="1b4nw1hqw645j8blf2b1hhnar7ffc4bw0zb07ycfjqd2prnif8pd"; depends=[downloader dplyr purrr r2d3 RColorBrewer stringr tibble tidyr]; }; + bipartite = derive2 { name="bipartite"; version="2.20"; sha256="0wgx695r5knlrzg0wv5h2sivh3xzjsb50lafmb08j1fvg3hnrxl6"; depends=[fields igraph MASS permute sna vegan]; }; + bipartiteD3 = derive2 { name="bipartiteD3"; version="0.3.1"; sha256="0w2bnlaga8nxdidrhgz34hqbxb5882jbz31a7g4n283gbz5w1b9g"; depends=[downloader dplyr purrr r2d3 RColorBrewer stringr tibble tidyr]; }; bipd = derive2 { name="bipd"; version="0.3"; sha256="1d8mcanmkjki3md047widfgf2hi905w24hibqsg1r7nr8d0g03yg"; depends=[coda dplyr mvtnorm rjags]; }; bipl5 = derive2 { name="bipl5"; version="1.0.2"; sha256="0anir5fgvac9ka5y9wfar7pbwdqd0qwx6hynlmr6jwhna57linly"; depends=[cluster crayon htmlwidgets knitr plotly]; }; biplotEZ = derive2 { name="biplotEZ"; version="1.2.0"; sha256="0fhafa00x1vj8lvhjm10daw8an62jsycsiq31skm547ig09fccym"; depends=[ggplot2 ggrepel withr]; }; biplotbootGUI = derive2 { name="biplotbootGUI"; version="1.3"; sha256="1z2mlfya6c4lh970p6hpf8sqhxz7wjl16d1lx2djv4cr8sj7nhdh"; depends=[cluster dendroextras MASS matlib rgl shapes tcltk2 tkrplot]; }; birankr = derive2 { name="birankr"; version="1.0.1"; sha256="1azgrzgw5bnfac8p287ir5zl6kxc6jij20p6cfc3lbbl03f8sa1k"; depends=[data_table Matrix]; }; + birdie = derive2 { name="birdie"; version="0.6.1"; sha256="1xh3ga5f16p46jrw7xj2mwv41mnib0mijin2005q9wrfr5pr54yc"; depends=[BH cli dplyr generics Rcpp RcppEigen RcppParallel RcppThread rlang SQUAREM StanHeaders stringi stringr vctrs]; }; birdring = derive2 { name="birdring"; version="1.6"; sha256="17f6hlvz6k4ya82nai7j474k55w3is8if4vckbwqq1c4lj9zfm6r"; depends=[geosphere ks lazyData raster]; }; birdscanR = derive2 { name="birdscanR"; version="0.2.0"; sha256="0vbvf9512214sgah3jsn7cdy8abkyr9pvaqaivqjrhyfpv9fvbr1"; depends=[DBI dplyr ggplot2 magrittr modi reshape2 RODBC RPostgreSQL rstudioapi sp suntools tibble tidyr]; }; birk = derive2 { name="birk"; version="2.1.2"; sha256="07ck59m5mw897a60vmdn1b3qrmqj20qpfsn3093haqbpn8z13dmn"; depends=[]; }; @@ -7131,28 +7265,28 @@ in with self; { biwavelet = derive2 { name="biwavelet"; version="0.20.21"; sha256="0v7arwmng2i22svj836i57q8by9x5pghjv7d35g7r35wakrm8jyx"; depends=[fields foreach Rcpp]; }; biwt = derive2 { name="biwt"; version="1.0.1"; sha256="0gg381jhwdc0kc8v0yn7wcgjkpn8dfnnn20m5ycjv66jlk2jhdcw"; depends=[MASS robustbase]; }; bizdays = derive2 { name="bizdays"; version="1.0.16"; sha256="0drdmry39k6rxyy4x7d667znsv8r8ias66z0bvxkfk5vamsv744i"; depends=[jsonlite]; }; - bizicount = derive2 { name="bizicount"; version="1.3.2"; sha256="10h99fzaa7b8wyzrpjkzqnn93f48sy1s9nhpw5l971mr2qss2zzz"; depends=[DHARMa Formula MASS numDeriv pbivnorm rlang texreg]; }; + bizicount = derive2 { name="bizicount"; version="1.3.3"; sha256="0f6qjyc81mh3f8amqm6wipr41zglv8y3khs5g8rnsx247xpshqdv"; depends=[DHARMa Formula MASS numDeriv pbivnorm rlang texreg]; }; bkmr = derive2 { name="bkmr"; version="0.2.2"; sha256="1bzr39a53p1xkq2fi2fphv2rpsml2z25xb1ycs63p3y7qis9zlky"; depends=[dplyr fields magrittr MASS nlme tibble tidyr tmvtnorm truncnorm]; }; bkmrhat = derive2 { name="bkmrhat"; version="1.1.3"; sha256="0l575dav5wyia37vm5j1dyljgk0k6l1hwfwsqr2gq3sb0iim4my4"; depends=[bkmr coda data_table future rstan]; }; blackbox = derive2 { name="blackbox"; version="1.1.46"; sha256="03m93v5nk5zg039axkf02drdj2q165k73xk6waaiyi0b8w0sbl8l"; depends=[foreach geometry lattice MASS matrixStats nloptr numDeriv pbapply proxy rcdd Rcpp RcppEigen spaMM]; }; - blackmarbler = derive2 { name="blackmarbler"; version="0.1.2"; sha256="0wjzan85jlyninvb72zk3iz0h5i4vpzxl27gj9ix9ggf94ylxljx"; depends=[dplyr exactextractr hdf5r httr lubridate purrr raster readr sf stringr tidyr]; }; + blackmarbler = derive2 { name="blackmarbler"; version="0.2.0"; sha256="09h2vjbqnb3kfmnmsah9p00w1sff15csaw382lmzy2klxw8k5zgn"; depends=[dplyr exactextractr hdf5r httr lubridate purrr readr sf stringr terra tidyr]; }; blaise = derive2 { name="blaise"; version="1.3.11"; sha256="1ll9yqfinc2x5bb90cvgj4mc5bl4gfsmdshi5pimnjdhzwmwa9jc"; depends=[dplyr readr stringr tibble]; }; - blandr = derive2 { name="blandr"; version="0.5.1"; sha256="1rqas71hlf000b3z824d8ljshf8bx91bbrzaxxnx5n3chv19w6z6"; depends=[ggplot2 jmvcore knitr R6 rmarkdown stringr]; }; + blandr = derive2 { name="blandr"; version="0.6.0"; sha256="1ckbdgyqxgycd99r0bbyw38cw6k4sq1nhi5xcc0rblck5h8hzn2i"; depends=[ggplot2 glue jmvcore knitr markdown rmarkdown stringr]; }; blapsr = derive2 { name="blapsr"; version="0.6.1"; sha256="1vycwglrpb0d041xj3dza25am16ac80r93si8x45b5ry0aq38c46"; depends=[coda MASS Matrix RSpectra sn survival]; }; blaster = derive2 { name="blaster"; version="1.0.7"; sha256="1p0d76dzn3kkdk6r4lp3kjh06iy3r2l4zhqwr3p888gxibzfwyb0"; depends=[Rcpp]; }; blastula = derive2 { name="blastula"; version="0.3.5"; sha256="1ppn3lyzdrarcq1laz0r8b018p0yxzs2ji1q82lg9nnmghqzs24b"; depends=[base64enc commonmark curl digest dplyr fs getPass here htmltools httr jsonlite magrittr mime rlang rmarkdown stringr uuid]; }; blatent = derive2 { name="blatent"; version="0.1.2"; sha256="0vmybbb5xwmlmzgzyaxiiargi4fd2f661sap2wfmjw9rav89zhmv"; depends=[coda Matrix mnormt R6 Rcpp RcppArmadillo truncnorm]; }; - blavaan = derive2 { name="blavaan"; version="0.5-3"; sha256="1xldcssvrb8wy1spw5j29mxxixb3x08in6xfscwmbwnhj3c6xma7"; depends=[bayesplot BH coda future_apply lavaan loo Matrix mnormt nonnest2 Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tmvnsim]; }; + blavaan = derive2 { name="blavaan"; version="0.5-5"; sha256="0v8b6dax5wk3y3hnih0yfsg7cvdwqv9pxs2hd54yi8hmkmgbrlx8"; depends=[bayesplot BH coda future_apply lavaan loo Matrix mnormt nonnest2 Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tmvnsim]; }; blender = derive2 { name="blender"; version="0.1.2"; sha256="1qqkfgf7fzwcz88a43cqr8bw86qda33f18dg3rv1k77gpjqr999c"; depends=[vegan]; }; blindrecalc = derive2 { name="blindrecalc"; version="1.0.1"; sha256="126mh5p1js4mm9sq3w6hs2vlx4baa6gzm9b9jybllfi751jsgjw5"; depends=[Rcpp]; }; blindreview = derive2 { name="blindreview"; version="2.0.0"; sha256="0hfqcykk5yg3sccqf73lxikb39ryir8fsd7a0qshpdxvbdjm6l1p"; depends=[Hmisc]; }; blink = derive2 { name="blink"; version="1.1.0"; sha256="053nw592sglzh6fgz7hj8ra6q7lqs83hhv14kcgs67b56q8a3crb"; depends=[plyr stringdist]; }; - bliss = derive2 { name="bliss"; version="1.0.4"; sha256="02kln40z10wngydn7y4x5shd2dff74gb340nhagf49k8ql9p78xw"; depends=[MASS Rcpp RcppArmadillo]; }; + bliss = derive2 { name="bliss"; version="1.1.0"; sha256="0s5xbk78ygyk8nc3b2279hr3cp4f0nk7nr0cam4n5h5s77cxi3fw"; depends=[ggplot2 MASS Rcpp RcppArmadillo RcppProgress]; }; blm = derive2 { name="blm"; version="2022.0.0.1"; sha256="0pmh3fw5iv9xhr08gji1q5vcaaai5s2qq40wisqdrqn5xhk9rh2h"; depends=[]; }; blme = derive2 { name="blme"; version="1.0-5"; sha256="0413j7gwr5yj14jamkizj55q7xii1a0kgazzj0ilqn2ascclz6k7"; depends=[lme4]; }; blmeco = derive2 { name="blmeco"; version="1.4"; sha256="1370djpy87816bfr0g8730x7q4d4xx9aa41iqm622q5b5zm2jzmp"; depends=[arm lme4 MASS]; }; blob = derive2 { name="blob"; version="1.2.4"; sha256="13vjy9f3zki8w1damz6kqq47689mk4l1navnwh7r6z8lqkmj52fh"; depends=[rlang vctrs]; }; - blockCV = derive2 { name="blockCV"; version="3.1-3"; sha256="0vnhwypywgm4jrz7ir4jb1g02xhldi4i0rw18nisqs5vax6iy1ch"; depends=[Rcpp sf]; }; + blockCV = derive2 { name="blockCV"; version="3.1-4"; sha256="00fhsiqwf6d7i48b59rgg0iw3bslg19aglzpic80gp8dgdrsrvmf"; depends=[Rcpp sf]; }; blockForest = derive2 { name="blockForest"; version="0.2.6"; sha256="1i5vqs0hh3yc82hl8bsa647plcv0c4c95b1wzdzyslxz2m5khw0l"; depends=[Matrix Rcpp RcppEigen survival]; }; blockTools = derive2 { name="blockTools"; version="0.6.4"; sha256="0372ca7mgzz6j0gp2yn2mjpj0kq01jg3pyhd33s65srap2n0wg0d"; depends=[dplyr MASS tibble]; }; blockcluster = derive2 { name="blockcluster"; version="4.5.5"; sha256="03149z73d19fg5cgsgvkj2m5vb0jssxwxp83bc76q7nq8mm4rwnr"; depends=[Rcpp rtkore]; }; @@ -7180,13 +7314,14 @@ in with self; { bmggum = derive2 { name="bmggum"; version="0.1.0"; sha256="1r0j5gklmknyan68nc3vfn96ck414v75547486ic70v2pdr3xnpf"; depends=[BH edstan ggplot2 GGUM loo Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; bmixture = derive2 { name="bmixture"; version="1.7"; sha256="09ahs2dwrbqhk4aki9291v5lr5fa9mvi087zrqjmv2057ypyv2n5"; depends=[BDgraph]; }; bmlm = derive2 { name="bmlm"; version="1.3.15"; sha256="1iig406z8whdjpbvajks2vzp1s1ay1f99r1n6qhs9xyi1z6yff2l"; depends=[BH ggplot2 Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; + bmm = derive2 { name="bmm"; version="1.0.1"; sha256="11fl9a0350602ipjzcwqh2fcbh1zhbachxb37wd4n25qaraqds6l"; depends=[brms crayon dplyr fs glue magrittr matrixStats tidyr withr]; }; bmp = derive2 { name="bmp"; version="0.3"; sha256="0jd67r11bn98hjwgyr6gas423787xy7ji2hq7ay80blkkcj91xxx"; depends=[]; }; bmscstan = derive2 { name="bmscstan"; version="1.2.1.0"; sha256="05w6pz0mwqighhdl36f2ya1b4dw0xdhpfcbq6saw73ag5hvl57i9"; depends=[bayesplot ggplot2 LaplacesDemon logspline loo rstan]; }; bmstdr = derive2 { name="bmstdr"; version="0.7.9"; sha256="0myv2mj5kp97dzvbf4sw63fzjxzpv2d82vxwiqxaqd1pllcgrzz1"; depends=[BH CARBayes CARBayesST ggplot2 ggpubr inlabru MCMCpack mnormt Rcpp RcppEigen RcppParallel Rdpack rstan rstantools spBayes spTDyn spTimer StanHeaders]; }; bnclassify = derive2 { name="bnclassify"; version="0.4.8"; sha256="0sqyqw3jlzjhsmcblzxcc3nak4z63pvg3paniysnjzyi139fjyam"; depends=[assertthat BH entropy matrixStats Rcpp rpart]; }; bndesr = derive2 { name="bndesr"; version="1.0.3"; sha256="0yx5grnaginmdxdi9philz24qvncr6gva01zrasl098p49dx0zpv"; depends=[curl dplyr janitor lubridate RCurl readr readxl stringr]; }; bndovb = derive2 { name="bndovb"; version="1.1"; sha256="16mvkvwnx61jrvraagvxf56pvmf5klm8lnkqq4s5y2z92kd0clgp"; depends=[dplyr factormodel MASS nnet np pracma]; }; - bnlearn = derive2 { name="bnlearn"; version="4.9.3"; sha256="0qgy9bz02wa9xsmga3sr8p2bvy6mr61l2ji8ill67wj7f6xqjyyl"; depends=[]; }; + bnlearn = derive2 { name="bnlearn"; version="4.9.4"; sha256="1spf8q1bhxc1mdx5hd8z7yqwlyn15fq3ph3rz1vr5v8z8n4qsgff"; depends=[]; }; bnma = derive2 { name="bnma"; version="1.6.0"; sha256="0z2kd9x5hi192dlr36r4vh9c66dzprm63y1l9v8av6dfnz63sj5b"; depends=[coda ggplot2 igraph rjags]; }; bnmonitor = derive2 { name="bnmonitor"; version="0.1.4"; sha256="0sbpfgm7yibh84m1zmn7b1ixzc2x1m2nlms7zpxp4c6fkv2c225r"; depends=[bnlearn dplyr ggplot2 gRain gRbase purrr qgraph RColorBrewer reshape2 rlang tidyr]; }; bnnSurvival = derive2 { name="bnnSurvival"; version="0.1.5"; sha256="1d9jmfx0id4lmw122zga7hb52vlfdfqn4amhzpsmhyck99rv92j4"; depends=[pec prodlim Rcpp]; }; @@ -7198,16 +7333,18 @@ in with self; { bodenmiller = derive2 { name="bodenmiller"; version="0.1.1"; sha256="0rdbk3f95iw4352fl9d81ir503q072chbb4hn1k12sp1wjc3apid"; depends=[]; }; bodsr = derive2 { name="bodsr"; version="0.1.0"; sha256="13d3fhdq1cyq7zhr6sj9nmw1zdfibq7mv6cjx8zlb1dmqi1m5d07"; depends=[dplyr httr jsonlite purrr rlang tibble xml2]; }; bodycomp = derive2 { name="bodycomp"; version="1.0.0"; sha256="1hi3x2chs87ba5nh7ka6xjrl5yvwqqcdyj1dg87rpaiipyl8396n"; depends=[]; }; + boggy = derive2 { name="boggy"; version="0.0.1"; sha256="0vxzwhmahfd4dx7x28n0c7l4gmz1921y60mfpcwaz2qjpl9d27m7"; depends=[tibble]; }; boilerpipeR = derive2 { name="boilerpipeR"; version="1.3.2"; sha256="1dws84ghc5r6zpnr23qd4l9bkazds8ar723wkrkikjni58vshjf1"; depends=[rJava]; }; boinet = derive2 { name="boinet"; version="1.0.0"; sha256="1i023h1kzf5xk92dp9iyllw2b1lprs0xz2hp23lqq9vx36cpird3"; depends=[copula Iso mfp]; }; - boiwsa = derive2 { name="boiwsa"; version="1.0.0"; sha256="1lcswyy9cm4bwmsfinkrxqzb0ca704y3k8g5acm9b6b1sjkkz5r6"; depends=[dplyr Hmisc lubridate MuMIn rlang tidyr]; }; + boiwsa = derive2 { name="boiwsa"; version="1.1.1"; sha256="1xyxx6xf9az62zxczybl6iizswq7h4i55v4apll8kh0xh6nqlzr7"; depends=[dplyr ggplot2 Hmisc lubridate rlang tidyr]; }; bolasso = derive2 { name="bolasso"; version="0.2.0"; sha256="1fbd39jyxq0zfbybrzzwnyql2w8hf2b9133jj0nl99d1326wr7dh"; depends=[future_apply gamlr ggplot2 glmnet Matrix progressr Rdpack tibble]; }; bold = derive2 { name="bold"; version="1.3.0"; sha256="0pwglcykyl5dnhqs8jg4hzih286v17w5dafkg3ahqk3c73a13b8f"; depends=[crul data_table jsonlite stringi xml2]; }; + bolsec = derive2 { name="bolsec"; version="0.1.1"; sha256="0ab5cydn4hbm1fbbd71xh5724wizrv9ckj3j6rklz46nhbwfjmr2"; depends=[dplyr formattable rvest]; }; bondAnalyst = derive2 { name="bondAnalyst"; version="1.0.1"; sha256="0bygaldjgxbjqjnlgs64vdayr7kp6sjl6qffdywxpi7v0yfi072a"; depends=[Rdpack]; }; bonn = derive2 { name="bonn"; version="1.0.2"; sha256="1z22cdizz8sgw4fry98adcjvn23ag3qvvcinbg3kmafksdk1ivmb"; depends=[httr jsonlite]; }; bonsai = derive2 { name="bonsai"; version="0.2.1"; sha256="048nfgnzsi0zz0nsxl30nsjg63nszy44881s49g9hgs3vng2vmp2"; depends=[cli dials dplyr glue parsnip purrr rlang tibble]; }; boodist = derive2 { name="boodist"; version="1.0.0"; sha256="1haplr64f5kai1y6kdxhxiayidy1mivh85dx140fya5r6fdk0shm"; depends=[BH R6 Rcpp RcppEigen RcppNumerical]; }; - bookdown = derive2 { name="bookdown"; version="0.38"; sha256="1i0z75sxvy3cb582siz544az6b9bs3vk2kyij9zx5jdpc1247fgd"; depends=[htmltools jquerylib knitr rmarkdown tinytex xfun yaml]; }; + bookdown = derive2 { name="bookdown"; version="0.39"; sha256="1brfv50lq92m7d4d18n92ywhfr28lrbq02naf0bwdsmd0ngasxrm"; depends=[htmltools jquerylib knitr rmarkdown tinytex xfun yaml]; }; boostingDEA = derive2 { name="boostingDEA"; version="0.1.0"; sha256="0df19q44fsv0hvda4dwq302wsh6vlalwszyh0ir66r5ryrrmhas4"; depends=[dplyr lpSolveAPI MLmetrics Rglpk]; }; boostmtree = derive2 { name="boostmtree"; version="1.5.1"; sha256="17na38k052lzjrssvxssllm9fwpnzhr29g9wwcfkbja6rv2pw9p1"; depends=[nlme randomForestSRC]; }; boostrq = derive2 { name="boostrq"; version="1.0.0"; sha256="1lf3gj1adnwxavlpmw9ygwz5pxz45bbdgz7cv46cp2jyh06y3sa3"; depends=[checkmate mboost quantreg stabs]; }; @@ -7223,13 +7360,14 @@ in with self; { bootPLS = derive2 { name="bootPLS"; version="0.9.9"; sha256="1i0bzykwjimyswb0z23sqbhm98b9lxifnkby682khva7yfk7k8qr"; depends=[bipartite boot doParallel foreach mvtnorm pls plsRglm spls]; }; bootSVD = derive2 { name="bootSVD"; version="1.1"; sha256="16d3qv8vzhfvl9vbfglkb3csmc4npb29jcq9apv89hj7bkcapvi9"; depends=[ff]; }; bootStepAIC = derive2 { name="bootStepAIC"; version="1.3-0"; sha256="1dmziq6yfycpap4hhlzl3xg2hsx4y135hy7r6qh9p98vxpa6mycl"; depends=[MASS]; }; - bootUR = derive2 { name="bootUR"; version="1.0.3"; sha256="024d1dlwdn2jv9sbsb05lscr7inn8xmnsr2kiwhs5n47x7p6vrns"; depends=[parallelly Rcpp RcppArmadillo RcppParallel RcppThread urca]; }; + bootUR = derive2 { name="bootUR"; version="1.0.4"; sha256="19sjh9hwx9hcqyrjx5kc2id1ml1sfd6c37g412vzfgk931bm0lbs"; depends=[parallelly Rcpp RcppArmadillo RcppParallel RcppThread urca]; }; bootcluster = derive2 { name="bootcluster"; version="0.3.2"; sha256="0wkc9li0hqgns7pz72fby187q81yzrgl62qs8w5llayghf8lhaml"; depends=[cluster doParallel dplyr flexclust foreach fpc GGally ggplot2 gridExtra igraph intergraph mclust network plyr sna]; }; bootf2 = derive2 { name="bootf2"; version="0.4.1"; sha256="17wrl678x9mb5pny2vwrr6sdl2hsqr1nbjzsizp2q6l3w5m6s152"; depends=[ggplot2 MASS minpack_lm readxl]; }; bootnet = derive2 { name="bootnet"; version="1.6"; sha256="0r7ad6ybzr3jm5s2791sv402293wi4wy59n7dv5q5ss1vykpsk6h"; depends=[abind corpcor dplyr ggplot2 gtools igraph IsingFit IsingSampler Matrix mgm mvtnorm NetworkToolbox networktools pbapply qgraph rlang snow tibble tidyr tidyselect]; }; bootruin = derive2 { name="bootruin"; version="1.2-4"; sha256="1gbvh99snchipf13kjhymcx60s2kni23y7lv8lhzd3d402grp68h"; depends=[]; }; bootstrap = derive2 { name="bootstrap"; version="2019.6"; sha256="1546jqhhw5h177ii8jkdikyd26rv6gwkav816np1zks4p7zgsljj"; depends=[]; }; bootstrapFP = derive2 { name="bootstrapFP"; version="0.4.6"; sha256="104vl9a6qqk0xr0pqmnm9v0rdc0x1jizvshf494zqkg9l97nq3yb"; depends=[sampling]; }; + bootsurv = derive2 { name="bootsurv"; version="0.0.1"; sha256="0c60xyhq8x3k75dxi8lcsz7i5xnizdzrypcvy27w5mb5nx9wg58i"; depends=[MASS]; }; bootwar = derive2 { name="bootwar"; version="0.2.1"; sha256="0cvwdi8qvm737qsnyr87wpsfmyzcdr7sga4zbkal8y5bj73h9y63"; depends=[ggplot2 mmcards npboottprm shiny shinyjs shinythemes]; }; bor = derive2 { name="bor"; version="0.1.0"; sha256="1r5jacmin0cq9zipxa9nmp3jnh6wsddd4wnzw2n5sggnf24ryp8g"; depends=[]; }; boral = derive2 { name="boral"; version="2.0.2"; sha256="1x53g3y283i92624rkp36lwfmz0p8rkkqsndn5h35sapjga6wmy3"; depends=[abind coda corpcor fishMod lifecycle MASS mvtnorm R2jags reshape2]; }; @@ -7240,6 +7378,7 @@ in with self; { boussinesq = derive2 { name="boussinesq"; version="1.0.6"; sha256="11dwc0j88zqxqwnrinc4f990vjbyv4bs16z6id6xw7yp7i2n5nla"; depends=[]; }; boutliers = derive2 { name="boutliers"; version="1.1-2"; sha256="0j2y6ndj03shssa7pgvg9cwbm5mv7ahy9kypj9z1ahskdi4xg1m1"; depends=[MASS metafor]; }; box = derive2 { name="box"; version="1.2.0"; sha256="00g5ik3f6260m38jl8k4s8nycmy7mzdwr7qslrl66phpg84xzmln"; depends=[]; }; + box_linters = derive2 { name="box.linters"; version="0.9.1"; sha256="1v0czkz09gp58ap7n847pcwqsd1n11i44wz6cppnlxhl1wcw8vzn"; depends=[cli fs glue lintr rlang stringr xml2 xmlparsedata]; }; boxcoxmix = derive2 { name="boxcoxmix"; version="0.42"; sha256="0z4iagli47i5jd9fi849wglwj2mbrn60wikb6n041k9yrfhgccma"; depends=[npmlreg qicharts statmod]; }; boxfilter = derive2 { name="boxfilter"; version="0.2"; sha256="03qx2bsqg7kkpf2q6xrj7ap0aczgascdrnkj5bcl3aq278fahnxi"; depends=[ggplot2 gridExtra]; }; boxly = derive2 { name="boxly"; version="0.1.1"; sha256="0fvk95f2nn06aaxn2qq7jxr2yvsnc40806xkamryhrnmrwiphia9"; depends=[brew crosstalk DT ggplot2 htmltools htmlwidgets metalite plotly rlang uuid]; }; @@ -7250,7 +7389,7 @@ in with self; { bpAcc = derive2 { name="bpAcc"; version="0.0-2"; sha256="0341mndgl9jybmkgqa3pfgk9ryn8738j04d1gy2yjacbs68xxhn8"; depends=[]; }; bpDir = derive2 { name="bpDir"; version="0.1.2"; sha256="1wkj25srsbidpcvgm6c74584ahybjy39r86dxir1vd13kbi8l120"; depends=[circular MASS plotrix]; }; bpa = derive2 { name="bpa"; version="0.1.1"; sha256="0np7q1nasrq4j7ssaipvbjgrsi9n612p9lp96frq1dgix95mcgf0"; depends=[magrittr plyr]; }; - bpbounds = derive2 { name="bpbounds"; version="0.1.5"; sha256="0qzvy6a41p4nrsw91xh0bv03v8ksfv4fag365pzlwisa1ng88sqj"; depends=[]; }; + bpbounds = derive2 { name="bpbounds"; version="0.1.6"; sha256="0f8knwvwllzraxkhawkljdm7mj2i0crd6yj415dya7nvp01ilaql"; depends=[]; }; bpca = derive2 { name="bpca"; version="1.3-6"; sha256="13rb6k50527aiaydapkvjyh3c2pk1anmz537y97mx35malfh1kmd"; depends=[rgl scatterplot3d xtable]; }; bpcp = derive2 { name="bpcp"; version="1.4.2"; sha256="1xgspmknjs7cqh0iw3qgikbxpbl2qscjx9n07ib5s3z8hi282wrn"; depends=[ggplot2 survival]; }; bpgmm = derive2 { name="bpgmm"; version="1.0.9"; sha256="0wrdh4c8yws7z5zd1yl23wbja88x57x651kqbnqj70k9a1195rwc"; depends=[fabMix gtools label_switching MASS mclust mcmcse mvtnorm pgmm Rcpp RcppArmadillo]; }; @@ -7258,8 +7397,8 @@ in with self; { bpmnVisualizationR = derive2 { name="bpmnVisualizationR"; version="0.5.0"; sha256="135afhq1x2aqdmn609vfk0248wsqbp66lkw7wqqzsb6czpap1q90"; depends=[htmlwidgets rlang xml2]; }; bpnreg = derive2 { name="bpnreg"; version="2.0.3"; sha256="1yy1rbbnqjrz0dkpvwi49432ddpjbql0vrpwvhzv9qzpv8ydvlw4"; depends=[BH haven Rcpp RcppArmadillo]; }; bpp = derive2 { name="bpp"; version="1.0.4"; sha256="07vz00y9m71n3a847jpviwyy0zb59402yyklsfmyxmggjivpjshi"; depends=[mvtnorm]; }; - bpr = derive2 { name="bpr"; version="1.0.7"; sha256="11hli3xsc432g8kppjxbim6nij7p1lbbv8ns075jpgdyd4i1piva"; depends=[BH coda MASS Rcpp RcppArmadillo]; }; - bqror = derive2 { name="bqror"; version="1.6.1"; sha256="0mg82bcc3cw2zhqz2j9539kw7cs159lzw363a2abcm7ys66dp6bd"; depends=[GIGrvg invgamma MASS NPflow pracma progress truncnorm]; }; + bpr = derive2 { name="bpr"; version="1.0.8"; sha256="1hiwz1s8gc6skl0zg7mjh29bxazka9wgrbbldqhy6f9vzrddl4pn"; depends=[BH coda MASS Rcpp RcppArmadillo]; }; + bqror = derive2 { name="bqror"; version="1.7.0"; sha256="1pisp3p3w5r9bfv5m5yykk410z5qvwsqdblmv7vsj1sc1nwf5y2v"; depends=[GIGrvg invgamma MASS NPflow pracma progress truncnorm]; }; bqtl = derive2 { name="bqtl"; version="1.0-36"; sha256="18fwg52j6dv1v1pcc4997j2f5vlfmcvqqdg0618fq9zaq8j4cz6h"; depends=[]; }; braQCA = derive2 { name="braQCA"; version="1.2.1.29"; sha256="0w1mg8lzl64mp5clinq3zai733iz3628zp4pw6vr51z24s56jg6i"; depends=[bootstrap dplyr QCA]; }; bracer = derive2 { name="bracer"; version="1.2.2"; sha256="0kbx30icv966sjv93as4yq88vkavbw68a7v2fnrvblzx2dgcis1n"; depends=[stringr]; }; @@ -7267,20 +7406,21 @@ in with self; { braggR = derive2 { name="braggR"; version="0.1.1"; sha256="1sq7knrnz3nqprlvsj24f9gj1i0viawq3wcv2b97dmbwa7rd5qfz"; depends=[Rcpp]; }; braidReports = derive2 { name="braidReports"; version="0.5.4"; sha256="1455pswcbz3zscvk6rgvgrjcp154l5lfx5m7s24m91rpjmc2y7pk"; depends=[braidrm ggplot2]; }; braidrm = derive2 { name="braidrm"; version="0.71"; sha256="1cn0rdlw775pmzbjmhny7gkm901a3qgz7infqb5s9az606xg54d3"; depends=[]; }; - brainGraph = derive2 { name="brainGraph"; version="3.0.0"; sha256="0sr2rf5fs02m3c304wbya2rszxcivc3cypg978hwzzcf30r4fy7y"; depends=[abind data_table doParallel foreach igraph lattice MASS Matrix permute]; }; + braids = derive2 { name="braids"; version="1.0.0"; sha256="1sbkdimqg4vxhw4djknjixzj37hp69nm7dcki2j6zfmrzhmvx1fl"; depends=[maybe]; }; + brainGraph = derive2 { name="brainGraph"; version="3.1.0"; sha256="009m3297bn1jl1aacypajkdawgjp3pwx7krz3bxifb0bmrdi0n7b"; depends=[abind data_table doParallel foreach igraph lattice MASS Matrix permute]; }; brainKCCA = derive2 { name="brainKCCA"; version="0.1.0"; sha256="1ag3qahlba4h4126873hg2bbi6sr729mhiw22gjgr4g4jg6lhh09"; depends=[brainR CCA elasticnet kernlab knitr misc3d oro_nifti rgl]; }; brainR = derive2 { name="brainR"; version="1.6.0"; sha256="1l5rm6grslc6mivwh2fv3pznhy2cw16fz5695pmyfamzvsjggir1"; depends=[misc3d oro_nifti rgl]; }; brandwatchR = derive2 { name="brandwatchR"; version="0.3.0"; sha256="10bccsaswsq06wdrxqg71amzx5rabmgfi4n074y651r2c1pyy98w"; depends=[data_table httr jsonlite]; }; brant = derive2 { name="brant"; version="0.3-0"; sha256="0rcp0am4wjlkinvmv0n5bky84v31ds28v163p5mlp343cgma2b62"; depends=[MASS Matrix]; }; brassica = derive2 { name="brassica"; version="1.0.2"; sha256="1av52p39jsv54q02v8xa7xilwmz5vzj6zy68y9m5lgl6s86r509y"; depends=[]; }; bratteli = derive2 { name="bratteli"; version="1.0.0"; sha256="07hl2s2vcjqx4db0gksfnwdarl59a9441d0ff13zf0vj0pbaqam2"; depends=[data_table diagram gmp kantorovich]; }; - bravo = derive2 { name="bravo"; version="2.3.1"; sha256="04hgjkxcjshj5n7d6pi58p5qkm8ni9zx7vnjwjh15bh1274yqqxr"; depends=[Matrix Rcpp]; }; - brclimr = derive2 { name="brclimr"; version="0.1.2"; sha256="0l2gk9zqa3lh9a4343h2n8ffm2x1arp84k44ah37krpsbxsvam6j"; depends=[arrow checkmate dplyr lobstr magrittr rlang]; }; + bravo = derive2 { name="bravo"; version="3.2.1"; sha256="0q7qm5jsj92sras5z5xr4hkz73l202xl8f0izhg2hiv3kam0z8rf"; depends=[Matrix Rcpp]; }; + brclimr = derive2 { name="brclimr"; version="0.2.0"; sha256="11870q60spq4pi7d6yvly48x8n9is15cj957aq8h7bw2lgcyzb1z"; depends=[checkmate DBI duckdb glue lobstr magrittr rlang]; }; brea = derive2 { name="brea"; version="0.2.0"; sha256="0mb043fdhxrg9gyf4g55ydjx37j20394nvd4d0fmiym98lccyi04"; depends=[]; }; bread = derive2 { name="bread"; version="0.4.1"; sha256="0vsxmqpgi2yjcpdpgdz6gzqkpjsq5ax4qkpys60bwmxyp1ahv90r"; depends=[data_table]; }; breakDown = derive2 { name="breakDown"; version="0.2.2"; sha256="1p02qy5kpv98qxlawn6l2hq7q48kv97ks3s9jnxawhqz44c08lwv"; depends=[ggplot2]; }; breakaway = derive2 { name="breakaway"; version="4.8.4"; sha256="08mxp41d79iaqbz96bpzw7halasijghv0557ccz5p563y5lk3n3m"; depends=[ggplot2 lme4 magrittr MASS phyloseq tibble]; }; - breakfast = derive2 { name="breakfast"; version="2.3"; sha256="03qkablrfgxp5c0kpyj38z831f6dwxwql2xkfpkpfjdiaqs7snrd"; depends=[ggplot2 plyr Rcpp]; }; + breakfast = derive2 { name="breakfast"; version="2.4"; sha256="0sxila1l2pk1z8lmskqppd8qm7wg08vvyyqxfyxcffvwhzqaf3rj"; depends=[ggplot2 plyr Rcpp]; }; breakpoint = derive2 { name="breakpoint"; version="1.2"; sha256="004vi1qr7iib8ykg6sp7xzv0bb841h4vsz2x0cyrhkdp41frglx9"; depends=[doParallel foreach ggplot2 MASS msm]; }; breathtestcore = derive2 { name="breathtestcore"; version="0.8.7"; sha256="0i5mih2v6397g0glgdhn5lrz3j0l6yv3pmlvs9pkg2vbjppif2sc"; depends=[assertthat broom dplyr ggfittext ggplot2 MASS multcomp nlme purrr readr readxl signal stringr tibble tidyr xml2]; }; breathteststan = derive2 { name="breathteststan"; version="0.8.5"; sha256="1b495qb0r8wdh4rnv3namnhrd1d6mba55ayj7h9s0076h8aw04hk"; depends=[BH breathtestcore dplyr purrr Rcpp RcppEigen rstan rstantools StanHeaders stringr tidyr]; }; @@ -7295,24 +7435,25 @@ in with self; { bridgesampling = derive2 { name="bridgesampling"; version="1.1-2"; sha256="0sry1xwiv4y52k44hq6z8y2kysp5kxgl4dix3m94svg3ladd7v2l"; depends=[Brobdingnag coda Matrix mvtnorm scales stringr]; }; brif = derive2 { name="brif"; version="1.4.1"; sha256="0zavddjs6y37ll68s0c3ap9p79disv7v54505pv6nyxqh40s22m8"; depends=[Rcpp]; }; brinton = derive2 { name="brinton"; version="0.2.7"; sha256="1z2d7a1wq5ms5j0mn2hgqvvp9x3mfvxw4llia8d0bs0mpm0jkjvn"; depends=[forcats GGally ggplot2 glue gridExtra lubridate pander patchwork RColorBrewer rmarkdown scales sm tibble]; }; - brio = derive2 { name="brio"; version="1.1.4"; sha256="1s0q1qk3w3fwf7gn4xfwhf8i8yqqb6z096x6xqsj8av8924z7fqc"; depends=[]; }; + brio = derive2 { name="brio"; version="1.1.5"; sha256="1f6hh7mck4bb1caivcvr6ms2pyqzzzawqyxjbgi9s0rrx8sj7wm9"; depends=[]; }; briqr = derive2 { name="briqr"; version="0.1.0"; sha256="073pdk1094ng4kggzdjvihl791r2qlja1j2w3pfmh2027kn520r8"; depends=[dplyr httr jsonlite magrittr tibble]; }; brisk = derive2 { name="brisk"; version="0.1.0"; sha256="1l6m47rj25klrjil0275bnv0m149d2kjh23r8cv7zw2vhmlza7z1"; depends=[dplyr ellipsis ggplot2 hitandrun purrr rlang tidyr]; }; brlrmr = derive2 { name="brlrmr"; version="0.1.7"; sha256="0s47qz8y416x0gz91pzdpr97pmlvddwkvll454vnlafxxk9p5lds"; depends=[boot brglm MASS profileModel Rcpp]; }; brm = derive2 { name="brm"; version="1.1.1"; sha256="0kyr8mxz5g3w41kp08d47f29cff8fqrfbm1ri7hgfg2lgr1151xy"; depends=[]; }; brms = derive2 { name="brms"; version="2.21.0"; sha256="0n2xxiibypfazcbx8rx4h5c4pl9zlmm0mkpyny23bf54q8rzz2bj"; depends=[abind backports bayesplot bridgesampling coda future future_apply ggplot2 glue loo Matrix matrixStats mgcv nleqslv nlme posterior Rcpp rlang rstan rstantools]; }; - brms_mmrm = derive2 { name="brms.mmrm"; version="0.1.0"; sha256="1iqp6915blbzjvfkqj9sa3gpads8qbhq19vi8isiszadi40218bk"; depends=[brms coda dplyr emmeans ggplot2 ggridges MASS posterior purrr rlang tibble tidyr tidyselect trialr zoo]; }; + brms_mmrm = derive2 { name="brms.mmrm"; version="1.0.0"; sha256="12srwi69mkhnj2m711r9pag89jlmxxsjksr1fhb5w5cbn0lyk9in"; depends=[brms dplyr ggplot2 ggridges MASS posterior purrr rlang tibble tidyr tidyselect trialr zoo]; }; brmsmargins = derive2 { name="brmsmargins"; version="0.2.0"; sha256="1qdfig1cy5cf3csky995m0jybb2hyp7yq7ka67wircrln919c1nm"; depends=[bayestestR brms data_table extraoperators posterior Rcpp RcppArmadillo]; }; brnn = derive2 { name="brnn"; version="0.9.3"; sha256="14gqbsrmv9r5kbp4c5swrpclympchyg4fw5f0b6g767y6mm22h7m"; depends=[Formula truncnorm]; }; brokenstick = derive2 { name="brokenstick"; version="2.5.0"; sha256="0bq470kvv9084qaaaz5yicmxpljp23gb3dqijrmdwk1agqxn09mc"; depends=[coda dplyr lme4 matrixsampling rlang tidyr]; }; - broman = derive2 { name="broman"; version="0.80"; sha256="02k8bxv8kpkasxn2m1z5ccvr9gg9lc8k3hskyaf7gvr4khhf575s"; depends=[ggplot2]; }; - broom = derive2 { name="broom"; version="1.0.5"; sha256="14fr17cvpy6jzdffzrf46xah70xcq2nkbjyxmkyzwbz3kvpdsxwx"; depends=[backports dplyr ellipsis generics glue lifecycle purrr rlang stringr tibble tidyr]; }; - broom_helpers = derive2 { name="broom.helpers"; version="1.14.0"; sha256="14vaqxv12yrvqllp8552nx68wk2qfjcy1iy7bajkspgdpwsjzhfd"; depends=[broom cli dplyr labelled lifecycle purrr rlang stringr tibble tidyr]; }; - broom_mixed = derive2 { name="broom.mixed"; version="0.2.9.4"; sha256="1ck0dk5fnacvwsvhp43m983gkmskw1a7f1bjkq5hacka64lwscbn"; depends=[broom coda dplyr forcats furrr nlme purrr stringr tibble tidyr]; }; + brolgar = derive2 { name="brolgar"; version="1.0.1"; sha256="19ps8faycijfqlmzhmcbf03gpcfwdayica456zqyark4pl2n0gjq"; depends=[dplyr fabletools ggplot2 glue magrittr purrr rlang tibble tidyr tsibble vctrs]; }; + broman = derive2 { name="broman"; version="0.84"; sha256="01q05xvxlam6isdhaq48sfw5fh60pcqlhivs7c38lh7c8r3w2172"; depends=[ggplot2]; }; + broom = derive2 { name="broom"; version="1.0.6"; sha256="1kxwkyhm4m586v2kp15r4q2zsarnkrkzmgl17n6y7ggzilj3dkr4"; depends=[backports dplyr generics glue lifecycle purrr rlang stringr tibble tidyr]; }; + broom_helpers = derive2 { name="broom.helpers"; version="1.15.0"; sha256="0gm9k2d73p6bhcmzc43qgy6v27pi036369dldz77hd5h5i95hp7c"; depends=[broom cli dplyr labelled lifecycle purrr rlang stringr tibble tidyr]; }; + broom_mixed = derive2 { name="broom.mixed"; version="0.2.9.5"; sha256="1css1g9r1345dwww9v56m7d9r74i4d27si7fsc4d8nhk4v6sd7wm"; depends=[broom coda dplyr forcats furrr nlme purrr stringr tibble tidyr]; }; brotli = derive2 { name="brotli"; version="1.3.0"; sha256="0zivyhyf6g7lb8r919a1cc2xvi36g6cszpl9rr200nfvvw6r6zf1"; depends=[]; }; brpop = derive2 { name="brpop"; version="0.3.0"; sha256="0wbs0r775g185q0zrlyskj5zrdkf6dbivi7lrychj9dpidl9i61i"; depends=[dplyr future magrittr multidplyr rlang]; }; brsim = derive2 { name="brsim"; version="0.3"; sha256="15clv6gfvvfclj9wmb6hr4ljfvs28spamq9rqj12nwzz5fihyhi9"; depends=[cluster corrplot RcmdrMisc]; }; - bruceR = derive2 { name="bruceR"; version="2023.9"; sha256="09i9ss1fhb4l4mypbk1jww1nscpy6g11a9miz33hykgywjkk40r4"; depends=[afex data_table dplyr effectsize emmeans ggplot2 interactions jtools lavaan lmerTest mediation MuMIn performance plyr psych rio rstudioapi stringr texreg tidyr]; }; + bruceR = derive2 { name="bruceR"; version="2024.6"; sha256="0ih2l2yf9vfmzx1l2npj8yp0brnqdiszq0ip26nw5vdgv9b7rm5l"; depends=[afex crayon data_table dplyr effectsize emmeans ggplot2 interactions jtools lavaan lmerTest mediation performance plyr psych rio rstudioapi stringr texreg tidyr]; }; brulee = derive2 { name="brulee"; version="0.3.0"; sha256="1lzn06q1i575n9b7axqxfp0ngycx2mdmh0cqw6zz80z3ikbi7hq9"; depends=[cli coro dplyr generics ggplot2 glue hardhat rlang tibble torch]; }; brunnermunzel = derive2 { name="brunnermunzel"; version="2.0"; sha256="1sz1nx9lgl7pwgx9a5m59svajsk4qv0ajzzkw9123vrh0wydy6j3"; depends=[]; }; brxx = derive2 { name="brxx"; version="0.1.2"; sha256="08qlfnf84k3yjcvr1wm6gd96mk26xf2gz59ychb3m981228hbbs6"; depends=[blavaan blme GPArotation MASS MCMCpack rstan TeachingDemos]; }; @@ -7321,21 +7462,21 @@ in with self; { bsTools = derive2 { name="bsTools"; version="1.0.5"; sha256="0akvk2i5gbrkxfwf69m1xjfn643d41rrdzp02gyhrxyhqwsx9p14"; depends=[html5 toolbox]; }; bsam = derive2 { name="bsam"; version="1.1.3"; sha256="1yiplh4wcc711w59ir5hxlp3mmgsnfz01d6203vfgclzsi7ix5m9"; depends=[coda dplyr ggplot2 gridExtra lubridate msm mvtnorm rjags rworldxtra sp tibble]; }; bsamGP = derive2 { name="bsamGP"; version="1.2.5"; sha256="1792kksvpzinap83asyz6iz7mp7xyi0a7lppxx1m8as7jwnk2nsk"; depends=[ggplot2 gridExtra MASS]; }; - bscui = derive2 { name="bscui"; version="0.1.3"; sha256="0xpy1xj0ajj0swnl55ahy3fja9dp4lv7vcz1zk12im175b0b2iqn"; depends=[htmlwidgets webshot2]; }; + bscui = derive2 { name="bscui"; version="0.1.5"; sha256="0qznfnqfji6vb0y2nawdi8xn6w7l1l8p1326ypjga1wla7ni5a52"; depends=[htmlwidgets webshot2]; }; bsearchtools = derive2 { name="bsearchtools"; version="0.0.61"; sha256="11fqz8kdhqpc3jq34vgv3frzawgsl5y0s83rb2p54yb5yhd3p68w"; depends=[Rcpp]; }; bsgof = derive2 { name="bsgof"; version="0.23.8"; sha256="0vgf61fglzlbgdk64z826nzb9rv37kw39rlk6m8rl84m3cjsw80a"; depends=[]; }; - bshazard = derive2 { name="bshazard"; version="1.1"; sha256="1kidypyqlilf794mksjvhja8bmnd9hdhz91ywy0mcddgc6wbar4h"; depends=[Epi survival]; }; + bshazard = derive2 { name="bshazard"; version="1.2"; sha256="1ghjb8rw6czrl1cy9c8wjap0vj4zvah2c1wdz2s7wff34gxynjmi"; depends=[Epi survival]; }; bsicons = derive2 { name="bsicons"; version="0.1.2"; sha256="1ifxb6qvm5m824n924pwa3f2ck33mzzbjq77jzdl36ikx4z0x47a"; depends=[cli htmltools rlang]; }; bsitar = derive2 { name="bsitar"; version="0.2.1"; sha256="1h18hk5qr3lcxy0iqhz2wfxhvyjl1bs45y78skx070qbxrgwai5z"; depends=[brms dplyr insight loo magrittr marginaleffects Rdpack rlang rstan sitar]; }; bskyr = derive2 { name="bskyr"; version="0.1.2"; sha256="0qnw7mbsbg0w4afqnvrw69vzc7d1j5lpyk06zlpppkswp594bnbq"; depends=[cli dplyr fs httr2 lubridate mime purrr rlang stringi stringr tibble tidyr]; }; - bslib = derive2 { name="bslib"; version="0.6.2"; sha256="0gjnb1ar6n3qg37ljy5yai0pd219zhm0n186jdzhsfwma5498ifh"; depends=[base64enc cachem htmltools jquerylib jsonlite lifecycle memoise mime rlang sass]; }; + bslib = derive2 { name="bslib"; version="0.7.0"; sha256="181cfmdvi64j978q8x69bl7wxwpjpx54a52sh4xng0pk3a2djd91"; depends=[base64enc cachem fastmap htmltools jquerylib jsonlite lifecycle memoise mime rlang sass]; }; bsnsing = derive2 { name="bsnsing"; version="1.0.1"; sha256="1a1vxh1fc5vz7wk73m093bvpz9qb52cfrxcj5yiqm56v309jckzk"; depends=[Rcpp]; }; bspcov = derive2 { name="bspcov"; version="1.0.0"; sha256="1zxdcqydhzisfp2bkvw585z3qfcpy0yjra91qyxwdf0lvdvqwbqx"; depends=[BayesFactor caret CholWishart coda dplyr FinCovRegularization furrr future ggmcmc ggplot2 GIGrvg ks magrittr MASS Matrix matrixcalc matrixStats mvnfast mvtnorm plyr progress purrr RSpectra]; }; bspec = derive2 { name="bspec"; version="1.6"; sha256="19l1sagx6kn6i8mcs3i0h6rh7rwsyhphncv55jywpv4g6616kqcv"; depends=[]; }; bspline = derive2 { name="bspline"; version="2.2"; sha256="0v7kbg7h0d0s2ywvjpahk2y2ncbv8kmacdznaixxakccqbl8piip"; depends=[arrApply nlsic Rcpp RcppArmadillo]; }; bsplinePsd = derive2 { name="bsplinePsd"; version="0.6.0"; sha256="0f785l02hiq3f7anxqhm09f7lrqgkkqhly7f1x78cxm22hvrqyhg"; depends=[Rcpp]; }; bsplus = derive2 { name="bsplus"; version="0.1.4"; sha256="0bf8qvj7pk3xn7g4p89as1xzx56c75n842g27rj6lcgsf9rdmv9g"; depends=[glue htmltools jsonlite lubridate magrittr purrr rmarkdown stringr]; }; - bspm = derive2 { name="bspm"; version="0.5.5"; sha256="07d68b8l3vxihd8wxy50rywldhdg3lwww5vab6cgdahc7vn937fl"; depends=[]; }; + bspm = derive2 { name="bspm"; version="0.5.7"; sha256="168mlimmab1i03fqvkgc449gcmdxr8dsy7b09pzvgswgxjgf7b2a"; depends=[]; }; bspmma = derive2 { name="bspmma"; version="0.1-2"; sha256="1a3p1h7bks5yrxv791wfa680v4a6q10p59iz6wvfifhf3ndlaw49"; depends=[]; }; bsreg = derive2 { name="bsreg"; version="0.0.2"; sha256="13701llj5k7vssmgb4fvxswcf9bsc4pxjvh67znbsvrv5cmjh5x3"; depends=[Matrix R6]; }; bssm = derive2 { name="bssm"; version="2.0.2"; sha256="121fb12n5z3w97xpj5ga1985drv3h4g7b0xy5yk9sfqfaqf92yyn"; depends=[bayesplot checkmate coda diagis dplyr posterior ramcmc Rcpp RcppArmadillo rlang sitmo tidyr]; }; @@ -7346,15 +7487,15 @@ in with self; { bsub = derive2 { name="bsub"; version="1.1.0"; sha256="112hlvg15jlzg3drfzkslaly42vnvsycn9vif0w3iaw5fzsaa954"; depends=[clisymbols crayon digest GetoptLong GlobalOptions]; }; bsvars = derive2 { name="bsvars"; version="2.1.0"; sha256="1gnjl27ik6p8zsis8fdqhwdzp2jp0kyqnidil4jgy02fiwdww6c5"; depends=[GIGrvg R6 Rcpp RcppArmadillo RcppProgress RcppTN stochvol]; }; btb = derive2 { name="btb"; version="0.2.0"; sha256="1gm03md6ky134nzmnnp054mi2w8kl4bgcgg4k65zf2cyniz4arxq"; depends=[BH dplyr magrittr mapsf Rcpp RcppArmadillo RcppParallel sf]; }; - btergm = derive2 { name="btergm"; version="1.10.11"; sha256="1xyjy5ig5hf45h8axp2ykyh3n56ls47h1bjsa85k992rk0lsc4dg"; depends=[boot coda ergm igraph Matrix network ROCR sna statnet_common]; }; + btergm = derive2 { name="btergm"; version="1.10.12"; sha256="1xcn24m6ldmi5wh44169vg13f7a7apbk45iwsl88clbnf2l9wpb8"; depends=[boot coda ergm igraph Matrix network ROCR sna statnet_common]; }; bubbleHeatmap = derive2 { name="bubbleHeatmap"; version="0.1.1"; sha256="0b12bhk0c65m5izp5ayy6fl4iv0jhk7hhwbnavyggawrpz23ikxr"; depends=[reshape]; }; bubblyr = derive2 { name="bubblyr"; version="0.1.2"; sha256="04agfwk6rmbhlfblfw1irqnv3yrp00zfn4qwy2169b7ypg8r55v2"; depends=[glue htmltools]; }; - bucky = derive2 { name="bucky"; version="1.0.7"; sha256="1ymlpmhgvhp7n7y9dbvi6zh73y8jvr09axq4skcliam8ks2xx1pm"; depends=[lmtest sandwich]; }; buildmer = derive2 { name="buildmer"; version="2.11"; sha256="0lmgzvi2jz92nps1z7cxla28ymxp5vnagikzk6dma94hycb7x2b4"; depends=[lme4 mgcv nlme]; }; buildr = derive2 { name="buildr"; version="0.1.1"; sha256="117j4z6c22d9c5aghsmqsvyjc94kr0vpandgbikl5cc4zphl7w03"; depends=[glue magrittr readr rstudioapi stringr tibble usethis]; }; bujar = derive2 { name="bujar"; version="0.2-11"; sha256="11g25sa2adlrzvs10k907c1a4anyigqd7lkd337vf8dcwrajqxa9"; depends=[bst earth elasticnet gbm mboost mda modeltools mpath rms survival]; }; bulkAnalyseR = derive2 { name="bulkAnalyseR"; version="1.1.0"; sha256="008vnkcaa26d8620i1l49mbcr7px5x16s5x2wlq1vm0jkxya4c3z"; depends=[circlize ComplexHeatmap DESeq2 dplyr DT edgeR GENIE3 ggforce ggnewscale ggplot2 ggrastr ggrepel ggVennDiagram glue gprofiler2 magrittr matrixStats noisyr preprocessCore RColorBrewer rlang scales shiny shinyjqui shinyjs shinyLP shinyWidgets stringr tibble tidyr UpSetR visNetwork]; }; - bulkreadr = derive2 { name="bulkreadr"; version="1.1.0"; sha256="067j95cbf22zi5rrih6i46l6kdy49ak3zal69q3r98cnhv9l2cl0"; depends=[curl dplyr fs googlesheets4 haven inspectdf labelled lubridate magrittr openxlsx purrr readr readxl sjlabelled stringr tibble]; }; + bulkQC = derive2 { name="bulkQC"; version="1.1"; sha256="0236knz4jh89nzwmdfxs0cinzj9ysnxvlcs6y87kjfpj7aywx6gb"; depends=[isotree stddiff]; }; + bulkreadr = derive2 { name="bulkreadr"; version="1.1.1"; sha256="0hq4xaxqjp08qd7h54s6nbvz2q7xpzxg1n6s0w9flavhl5jfilzg"; depends=[curl dplyr fs googlesheets4 haven inspectdf labelled lubridate magrittr openxlsx purrr readr readxl rlang sjlabelled stringr tibble tidyr]; }; bulletcp = derive2 { name="bulletcp"; version="1.0.0"; sha256="1k7lw8gflih47ncz8hgsj0sxbajnkhz1k7yb7rwbdnzcki3n3jln"; depends=[assertthat dplyr mvtnorm Rdpack]; }; bulletr = derive2 { name="bulletr"; version="0.1"; sha256="181rnrp62almf08gr41qnrnq8qnbqraqdvj4zixdh8fachsq2imp"; depends=[dplyr ggplot2 plotly plyr reshape2 robustbase smoother xml2 zoo]; }; bullishTrader = derive2 { name="bullishTrader"; version="1.0.1"; sha256="0mh6skgkayjsqww4q6rpzhj0n5l3lb9wwh29gy9y08cqd91i02rs"; depends=[]; }; @@ -7363,17 +7504,18 @@ in with self; { bumblebee = derive2 { name="bumblebee"; version="0.1.0"; sha256="055plkcswq7qsy3flkjjq5kqampj9s8dbc3ahzinps6s0jkcv2ad"; depends=[dplyr gtools Hmisc magrittr rmarkdown]; }; bunching = derive2 { name="bunching"; version="0.8.6"; sha256="08rsm2dgqgqr94sw7qijvsqcba4hqp43ci53plzifsa5rr2gwvfl"; depends=[BB dplyr ggplot2 tidyr]; }; bunchr = derive2 { name="bunchr"; version="1.2.0"; sha256="1b8hdg2x26k0ahx4gxdpzr36hy056939r4496q3vbgyd4bbk2fbd"; depends=[shiny]; }; - bundesbank = derive2 { name="bundesbank"; version="0.1-11"; sha256="1kgc8868vmsmg03yzg3lqpfync4q6xglr2x7ksj5ywddk74axxx0"; depends=[]; }; + bundesbank = derive2 { name="bundesbank"; version="0.1-12"; sha256="11jfw2blzsfs479jrz8h0nslk99g6g5ih0ahb0a2w9cad0hwhkdj"; depends=[]; }; bundesligR = derive2 { name="bundesligR"; version="0.1.0"; sha256="0dnhbh9jh7dfbk7mfh8msq4ys5kakalr0kwkycycrb2q8rd049vp"; depends=[]; }; bundle = derive2 { name="bundle"; version="0.1.1"; sha256="1b3l14khp6fblb47sy9p5wh78izsbj1xjjj2r55hp2hcx2f1isjz"; depends=[glue purrr rlang withr]; }; - bupaR = derive2 { name="bupaR"; version="0.5.3"; sha256="05iaqaa836apv8qb9pfzgih3cf8z78f40wdl759v1gg6pd32h082"; depends=[cli data_table dplyr eventdataR forcats ggplot2 glue lifecycle lubridate magrittr miniUI pillar purrr rlang shiny stringi stringr tibble tidyr]; }; + bupaR = derive2 { name="bupaR"; version="0.5.4"; sha256="16m9n7h1nwfz564cxyhgkxdzszcr3nr7abz4d6mqx97kjv46k23n"; depends=[cli data_table dplyr eventdataR forcats ggplot2 glue lifecycle lubridate magrittr miniUI pillar purrr rlang shiny stringi stringr tibble tidyr]; }; bupaverse = derive2 { name="bupaverse"; version="0.1.0"; sha256="1h79flc3ks23n1ih8vf741akvii3y25hqdl8k479hkhk423pfma2"; depends=[bupaR cli edeaR eventdataR glue magrittr processcheckR processmapR purrr rlang]; }; + burgle = derive2 { name="burgle"; version="0.1.0"; sha256="11696f86vh2iflc6fignvip206kfsh3hh17x764jgng587v59zz2"; depends=[MASS riskRegression survival]; }; burnr = derive2 { name="burnr"; version="0.6.1"; sha256="0pgki4inyql8h10i78yzqm73jy2h7rdp9ywsk65virxaadpngy9c"; depends=[forcats ggplot2 MASS plyr reshape2 rlang stringr tidyr]; }; bursa = derive2 { name="bursa"; version="0.1.0"; sha256="14pjl5l0rh7aap8d2zmsd2spg6521vkkpiigh0jh5ly2cc56zyvr"; depends=[dplyr jsonlite openxlsx readr rvest stringr]; }; bursts = derive2 { name="bursts"; version="1.0-2"; sha256="0cbksnxavkssp3mz80rz0sdvbg21m5yzjn009wclinz12mm1p9rq"; depends=[]; }; busdater = derive2 { name="busdater"; version="0.2.0"; sha256="0hib73zay9r7rv49zv1lx0l15jzjyli9f1vrk414l8apggvx4c6s"; depends=[lubridate]; }; businessPlanR = derive2 { name="businessPlanR"; version="0.1-0"; sha256="19fbyycydivkldj845jsg5xidysiddnxqd4by14v2yyripy8d44j"; depends=[kableExtra knitr]; }; - butcher = derive2 { name="butcher"; version="0.3.3"; sha256="14zf732rcy0f1n0l7km9jx74i0dwqdf864v2510lwpkfblgnw4s7"; depends=[cli lobstr purrr rlang tibble vctrs]; }; + butcher = derive2 { name="butcher"; version="0.3.4"; sha256="027j48n0izwzlg63gml5wkx19kpmd5crbdkmg7p366lpbhhvbs0d"; depends=[cli lobstr purrr rlang tibble vctrs]; }; butterflyOptions = derive2 { name="butterflyOptions"; version="1.0.1"; sha256="0kmzrk8gqyqrpp4wfsl04cff13m6aiag7d6fbq7kbb6ln8fa6as9"; depends=[dplyr ggplot2 magrittr tibble]; }; bvarsv = derive2 { name="bvarsv"; version="1.1"; sha256="1bv4fbbi8bn7sqqpjlf8w5jpgydjr15wv5v9940wc42yk792yjrx"; depends=[Rcpp RcppArmadillo]; }; bvartools = derive2 { name="bvartools"; version="0.2.4"; sha256="0klbzxqypqm5v549k56fvl67yri7bwaazf02ypsg6xyriz2a9ck4"; depends=[coda Matrix Rcpp RcppArmadillo]; }; @@ -7411,7 +7553,7 @@ in with self; { cacIRT = derive2 { name="cacIRT"; version="1.4"; sha256="145j6isqa8yj2nvlqkxagd076zs10ng3n44khi5p4jj77fjc8gh6"; depends=[]; }; cacc = derive2 { name="cacc"; version="0.1.0"; sha256="0dl2n5shjagr7zjsl6cyw3jxz29h9dbjfwrhphqdaymjv6yaxxj9"; depends=[dplyr ggplot2 rlang tibble tidyr]; }; cache = derive2 { name="cache"; version="0.0.3"; sha256="0ix8z9zxslnycqn75rlz7f059jwfcclpxbas5sihcdmrdavz5ggj"; depends=[cli digest here r_assert]; }; - cachem = derive2 { name="cachem"; version="1.0.8"; sha256="1hj5gw040pdrl3iwvwbgyrs91jcar0pwr3kmf23wwpb1zqcsk77a"; depends=[fastmap rlang]; }; + cachem = derive2 { name="cachem"; version="1.1.0"; sha256="089f963h59z4n0sj3isjq2h7zw2485qw38jv8zdnbn755by3j22m"; depends=[fastmap rlang]; }; caesar = derive2 { name="caesar"; version="1.1.0"; sha256="17w19m1c4a8x68bfbll71r9d3d34xnqw7lkhvqbnajd0cdm9xpa2"; depends=[binhf]; }; caffsim = derive2 { name="caffsim"; version="0.2.2"; sha256="00bkgmmqrydpji2pvhcchgl2p8w5ksby4g80i3h76q0bm2325w9h"; depends=[dplyr ggplot2 markdown mgcv shiny tibble tidyr]; }; calACS = derive2 { name="calACS"; version="2.2.2"; sha256="0a53k2rzyjksb0ypr5zrask4a6mgiyrqx0l2z3lm218y8pk2jf1w"; depends=[]; }; @@ -7419,16 +7561,17 @@ in with self; { calculus = derive2 { name="calculus"; version="1.0.1"; sha256="1p80bgg6896z798cx7nwqbwd0rxdv27kamaw1gw0hv4lpqsr7q10"; depends=[Rcpp]; }; calendR = derive2 { name="calendR"; version="1.2"; sha256="1fkzsibjawshb4i5q941bjjn4yxkj8wcblw5ckmig3s31sjrb1yc"; depends=[dplyr forcats gggibbous ggimage ggplot2 suncalc]; }; calendRio = derive2 { name="calendRio"; version="0.2.0"; sha256="152fb5yaazb2hh99ag1aq675gc5f8xw990w55nkhxqhg6w5p0ln9"; depends=[dplyr forcats gggibbous ggimage ggplot2 suncalc]; }; - calendar = derive2 { name="calendar"; version="0.0.1"; sha256="18ha6vpx2bpk8p08hajiq2d201fbqhzcycp8ks6wrr06fy04z689"; depends=[lubridate tibble]; }; - calibmsm = derive2 { name="calibmsm"; version="1.0.0"; sha256="1ys222zm5p1spnmv43af5bqhv9nxvslzzih99n1w936nwl1gvh2i"; depends=[boot dplyr ggplot2 ggpubr Hmisc magrittr mstate rms survival tidyr VGAM]; }; + calendar = derive2 { name="calendar"; version="0.1.0"; sha256="0kjapjjjqmc4v2jvfnzy096m82m7xybcj952vmrx7kgnz07kynai"; depends=[lubridate tibble]; }; + calibmsm = derive2 { name="calibmsm"; version="1.1.1"; sha256="1yg5m2zsiw005fdihlilk43h27c7yyzlnbsb32qr9k67q010rk00"; depends=[boot dplyr ggExtra ggplot2 ggpubr gridExtra Hmisc mstate rms survival tidyr VGAM]; }; calibrar = derive2 { name="calibrar"; version="0.9.0"; sha256="10ig891vbxc9wqpmf5pmqyz9pi7mp4nicipmwgjbsygrqkqy0m0v"; depends=[BB cmaes DEoptim dfoptim foreach GenSA lbfgsb3c minqa optimx pso rgenoud soma stringr]; }; calibrate = derive2 { name="calibrate"; version="1.7.7"; sha256="19kgrnsyq67iqv1biyssqi30a6v2836ql20nabpy2m692ns0jfvi"; depends=[MASS]; }; calibrateBinary = derive2 { name="calibrateBinary"; version="0.1"; sha256="1k6sl4bg05piyczpk6wsva914gcmy8viyz4423gx9i6ddflb7xdb"; depends=[gelnet GPfit kernlab randtoolbox]; }; calibrationband = derive2 { name="calibrationband"; version="0.2.1"; sha256="1m3dp7h9dy1ipji3vinknqyhbw1gbv48473rbhpykps8hzrqg206"; depends=[dplyr ggplot2 magrittr Rcpp rlang sp tibble tidyr tidyselect]; }; calibrator = derive2 { name="calibrator"; version="1.2-8"; sha256="1m9g1pmnr6d9jkg5ab0l0cbqfj7kmx7sdmcdqdhn9ifyhhn7812y"; depends=[cubature emulator mvtnorm]; }; calidad = derive2 { name="calidad"; version="0.5.0"; sha256="170ijr5kxaqwbvv8p1vs3jsld61kflicyycnjy640d28byj4lpmc"; depends=[dplyr haven kableExtra purrr rlang stringr survey tidyr]; }; - callr = derive2 { name="callr"; version="3.7.5"; sha256="0b277fvjglnqrjmsm4ilhqrp9sjag0r9mxls2h9v1m94ff7ix88q"; depends=[processx R6]; }; - callsync = derive2 { name="callsync"; version="0.2.1"; sha256="1p8r2r4w3bwpr03f990m2k19dv4lgsgp6l9rhxzrayknc3zndqx9"; depends=[dplyr oce scales seewave signal stringr tuneR]; }; + callback = derive2 { name="callback"; version="0.1.0"; sha256="069dqihw5ll9n5n35vya5jqy9rc9r46g4jyw6b2dbz4s4sblimsq"; depends=[]; }; + callr = derive2 { name="callr"; version="3.7.6"; sha256="1y2ildc0ni01lkcircbr648f5knq6ch6smh5xap2xr39x1ky7g74"; depends=[processx R6]; }; + callsync = derive2 { name="callsync"; version="0.2.3"; sha256="03ks7wspkvr6fy54ggxj1rzxsdqraq1dlv384v0b4b7x4z7kj73l"; depends=[dplyr oce scales seewave signal stringr tuneR]; }; calmate = derive2 { name="calmate"; version="0.13.0"; sha256="17gfk3am8frj9pqx31pmjswm5nvca9nqbanl0qj4ypsr8wymix7w"; depends=[aroma_core MASS matrixStats R_filesets R_methodsS3 R_oo R_utils]; }; calmr = derive2 { name="calmr"; version="0.6.1"; sha256="11hb2d9a5vzda94qb3pg440vgch2pfn8jhkw71hj6xzw8aqylhs3"; depends=[data_table future future_apply GA ggnetwork ggplot2 network patchwork progressr rlang]; }; calpassapi = derive2 { name="calpassapi"; version="0.0.3"; sha256="1vhx5h7ah75cs1mlw25x7hal90m47596kr7fx2pd8fslq7il7p1b"; depends=[digest dplyr httr jsonlite stringr]; }; @@ -7436,23 +7579,22 @@ in with self; { camerondata = derive2 { name="camerondata"; version="1.0.0"; sha256="0nj9dxwklhqyqrqfq88vpi4mdd6gvd3mzi80h8fi7hjzv5pmgqad"; depends=[]; }; campaignmanageR = derive2 { name="campaignmanageR"; version="0.1.0"; sha256="1x240l0jlyg4ldb4j9pa2v2nryxnyg8y14ywcdcpfnw4056ms3f5"; depends=[jsonlite]; }; campfin = derive2 { name="campfin"; version="1.0.11"; sha256="10mry0zn9h6dx79vqxpifn5bnxc9h500x7m3yh1vx4jshbvmgvnk"; depends=[dplyr fs ggplot2 glue httr lubridate magrittr purrr readr rlang scales stringdist stringr tibble]; }; - campsis = derive2 { name="campsis"; version="1.5.1"; sha256="1njz9qhrsf5nca4v2ph94lxc5l2k5ayhbv768rhv9r4maxilpjfw"; depends=[assertthat campsismod digest dplyr furrr future ggplot2 MASS plyr progressr purrr rlang tibble tidyr]; }; + campsis = derive2 { name="campsis"; version="1.5.2"; sha256="01ylxdvl0wi313r5mj8s6xz596b7an08hslrym2y69c9qv8a62cg"; depends=[assertthat campsismod digest dplyr furrr future ggplot2 MASS plyr progressr purrr rlang tibble tidyr]; }; campsismod = derive2 { name="campsismod"; version="1.1.1"; sha256="0d3bdfx4jcnpzbnz6ymgz10s4137van6bcg5s4a3yzf90f02lbns"; depends=[assertthat dplyr magrittr plyr purrr readr tibble]; }; camsRad = derive2 { name="camsRad"; version="0.3.0"; sha256="06gar6qan1ka01ngjvbpcv649yvfga697mplwn1x6qnfr4ngb7cs"; depends=[httr xml2]; }; camtrapR = derive2 { name="camtrapR"; version="2.3.0"; sha256="02y4y19v2kgc0mazpk4dxfivln7bylgqqwllz2rw7x0wgjab3l3y"; depends=[data_table generics ggplot2 lubridate secr sf]; }; + camtrapdp = derive2 { name="camtrapdp"; version="0.2.1"; sha256="0nx9w5h8py8cjqynlknh8klvzy2mhacv96vybkv7hcyhpdsnmfs7"; depends=[cli dplyr frictionless memoise purrr readr]; }; canadamaps = derive2 { name="canadamaps"; version="0.1"; sha256="1i3yjhr5p06k6id3gws5dzdhf4jy143brbfhi2z4srq67xlz5agl"; depends=[dplyr magrittr rlang rmapshaper sf]; }; - canadianmaps = derive2 { name="canadianmaps"; version="1.3.0"; sha256="1sk2jf0brlz1bq3xjniif51zlhglgw83ffznkvnqnbcvcbh5ha96"; depends=[dplyr ggplot2 ggrepel RColorBrewer sf sp]; }; + canadianmaps = derive2 { name="canadianmaps"; version="2.0.0"; sha256="08kf6jxvqh6kyfb639kdqpq33qlrpaz94ayknbj13hm4asgsn3w5"; depends=[dplyr ggplot2 ggrepel RColorBrewer sf sp]; }; canaper = derive2 { name="canaper"; version="1.0.1"; sha256="12is3x3srmdf39csf8q09n2377h9my2qwy0knwc3kfjdg6f9yzs7"; depends=[ape assertr assertthat dplyr future_apply phyloregion progressr purrr tibble vegan]; }; cancensus = derive2 { name="cancensus"; version="0.5.7"; sha256="02392bbyzdn2nacjsc3rjv6f3y0mczacpa96azrm300l1j6zsszr"; depends=[digest dplyr httr jsonlite rlang]; }; cancerGI = derive2 { name="cancerGI"; version="1.0.1"; sha256="1cbpxw6l09sdnf6nyw0hvhrc97awnidi72a2jsjf3v8ml012xd5f"; depends=[igraph qvalue reshape2 survival systemfit]; }; - cancerTiming = derive2 { name="cancerTiming"; version="3.1.8"; sha256="1sfi8q2f5ag7iak0sf9pmqncb89w3gnxdiwjwpivkwhr28ais4mq"; depends=[gplots LearnBayes]; }; - cancerscreening = derive2 { name="cancerscreening"; version="1.0.2"; sha256="1vmskbxgrb82477vpwlhi4asxxqpvk3bva0vaqp7pfirahjkvwmy"; depends=[cli curl dplyr gargle httr2 jsonlite lubridate magrittr rlang stringr tibble tidyr withr]; }; - candisc = derive2 { name="candisc"; version="0.8-6"; sha256="17bhh3jgaq5hrlwaapwpsgk7f8a3sg2cmrjd1hgfxxx0z30a6icn"; depends=[car heplots]; }; - canprot = derive2 { name="canprot"; version="1.1.2"; sha256="1lwlgzy0gxp7jrak838awmqz3w0x7qd51bkyhydb1s61073w77x8"; depends=[CHNOSZ MASS rmarkdown xtable]; }; + cancerscreening = derive2 { name="cancerscreening"; version="1.1.1"; sha256="1lrdbf2bz6arh9s7x9k10vs986yxrhv23fahrwnl38172ggwv3f9"; depends=[cli dplyr khisr lubridate magrittr rlang stringr tidyr withr]; }; + candisc = derive2 { name="candisc"; version="0.9.0"; sha256="0wl5hmx0hb0d1rk9as989nfpvdj64s4kjxd6852qvh9i54dab254"; depends=[car heplots]; }; + canprot = derive2 { name="canprot"; version="2.0.0"; sha256="0b1jfrqdcn90r9ninc5l809vr586r1arbrf9w8dvrfh97gscb5dn"; depends=[multcompView stringi]; }; cansim = derive2 { name="cansim"; version="0.3.16"; sha256="144p7zc44xb0szslsrxg1q1lhn5rizlgc0rvsinwzglnkzl478p2"; depends=[DBI digest dplyr httr jsonlite purrr readr rlang RSQLite rvest stringr tibble xml2]; }; canvasXpress = derive2 { name="canvasXpress"; version="1.46.9-1"; sha256="0zb6cgpxzd9245jzabvw9x09ziihkfjc3gx1qclpqkvdbyq85qx6"; depends=[htmltools htmlwidgets httr jsonlite]; }; canvasXpress_data = derive2 { name="canvasXpress.data"; version="1.34.2"; sha256="10fdlb1yp5x9533jdammncfrrlxzpcz9as8i0209pwzjywvxby3s"; depends=[]; }; - cap = derive2 { name="cap"; version="1.0"; sha256="1pv8hskxjbp589dn7rx80yaa1ld76x1w37bss2fyrys1p3qr78aa"; depends=[MASS multigroup]; }; cape = derive2 { name="cape"; version="3.1.2"; sha256="01bxyhn0kk07yx4012px6cys0csqgrsf2n5abdg22vr7ky7phqja"; depends=[abind caTools corpcor doParallel evd foreach here igraph Matrix pheatmap pracma propagate qtl qtl2 qtl2convert R6 RColorBrewer regress shape yaml]; }; caper = derive2 { name="caper"; version="1.0.3"; sha256="1f1mw54gv1r40wrrsznhgffdj8ggrwihiwdd8wyqccyvqm49fxjg"; depends=[ape MASS mvtnorm]; }; capitalR = derive2 { name="capitalR"; version="1.3.0"; sha256="08lvncia9mdrnw84zydf1k7336xawiirh2swziqfwx3z1n172n52"; depends=[]; }; @@ -7472,10 +7614,11 @@ in with self; { carcass = derive2 { name="carcass"; version="1.7"; sha256="09l9yk7knfjhrcpwfwmgla9ghnpg1b10aljmdl70j5kxdiafkfn7"; depends=[arm expm lme4 MASS survival]; }; card = derive2 { name="card"; version="0.1.0"; sha256="1api0j06fp5av5a48vnnm1wvwdcskynf0xsj9pb41njxdh9v8daf"; depends=[broom data_table dplyr generics ggplot2 ggrepel hardhat Hmisc lubridate lutz magrittr purrr readr recipes rlang sf stringr survival tibble tidyr]; }; cardidates = derive2 { name="cardidates"; version="0.4.9"; sha256="0b52cmg870s6icq53c6v6zjgz6w1pv02p83r8k4q0sksq5fy0ik4"; depends=[boot lattice pastecs]; }; + cardinalR = derive2 { name="cardinalR"; version="0.1.1"; sha256="1hqdvxialk41r6l0k7vllh4bxdqx2ci4rcppd7nl0w1d3lz9561i"; depends=[purrr]; }; cards = derive2 { name="cards"; version="0.1.0"; sha256="1a7khr8jzzvhb3lxb088d3akpq0jd7mjnb2y3z445mxl55wqgk2c"; depends=[cli dplyr glue rlang tidyr tidyselect]; }; cardx = derive2 { name="cardx"; version="0.1.0"; sha256="1zw9l8w1jv7hs55jc7c5m2vxmsxv9lfzsvm23zwfpcks4ich26gb"; depends=[cards cli dplyr glue rlang tidyr]; }; care = derive2 { name="care"; version="1.1.11"; sha256="0897v6acxf1myncd507by8zp7aga77pschyix1m4fzgpc6z35vlm"; depends=[corpcor]; }; - care4cmodel = derive2 { name="care4cmodel"; version="1.0.1"; sha256="0d54bnjgbzb1yvrkb9q1p83l29dbg4q49a3ahyxrghnxkzlrc695"; depends=[deSolve dplyr ggplot2 purrr Rdpack rlang tibble tidyr tidyselect]; }; + care4cmodel = derive2 { name="care4cmodel"; version="1.0.2"; sha256="0526z49v4mxfxjlpzjnqyzc8j2lvj1aw47f3izsk1vrs193vxnvw"; depends=[deSolve dplyr ggplot2 purrr Rdpack rlang tibble tidyr tidyselect]; }; careless = derive2 { name="careless"; version="1.2.2"; sha256="1ncfcz5zznchcj4ndfhk9lb72l766yzsiicq5ry0m4djn74d9lva"; depends=[psych]; }; caresid = derive2 { name="caresid"; version="0.1"; sha256="1mrnvg6dl1344j880ngw9hxfg5rc82ljv25ahc1pqgs0ji8v5di2"; depends=[ca ggplot2 ggrepel]; }; caret = derive2 { name="caret"; version="6.0-94"; sha256="1a191n9qswvf8ri6id8picqgdqx15l6mp996v6f77fv0l8yfh597"; depends=[e1071 foreach ggplot2 lattice ModelMetrics nlme plyr pROC recipes reshape2 withr]; }; @@ -7496,10 +7639,10 @@ in with self; { cascadeSelect = derive2 { name="cascadeSelect"; version="1.1.0"; sha256="1hb8h0v7c76jbhqp713wkmx278q9calpg1rwgdhbrdbq6caldhq7"; depends=[fontawesome htmltools reactR shiny]; }; cascsim = derive2 { name="cascsim"; version="0.4"; sha256="0n6frnbby1pjpx1z9lzxflmja2mg0dy99c5f7biakpaqi82x5xjb"; depends=[copula fitdistrplus moments R2HTML scatterplot3d]; }; caseMatch = derive2 { name="caseMatch"; version="1.1.0"; sha256="1lzskh04v2mc6487zd2sq2l14si0mpid91f6avn0i3zz19nqyqsz"; depends=[]; }; - casebase = derive2 { name="casebase"; version="0.10.4"; sha256="0i9szaalszrlk77wgh5fkiaxqacnx42bpj0410fpx0z3k0g608k2"; depends=[data_table ggplot2 mgcv survival VGAM]; }; + casebase = derive2 { name="casebase"; version="0.10.5"; sha256="0i9x0z6b3s2qzdyjsaj4bafk20yhbgggljxdwhmm52b4qm7rrgzz"; depends=[data_table ggplot2 mgcv survival VGAM]; }; cases = derive2 { name="cases"; version="0.1.1"; sha256="16yfypaqjnl3b99a55mri2j55xaj7dixw76wbpbfa3s4y0zylwpz"; depends=[bindata boot copula corrplot dplyr extraDistr ggplot2 magrittr Matrix multcomp mvtnorm]; }; casino = derive2 { name="casino"; version="0.1.0"; sha256="07fphn46718gr1zm0xr43mwv7yk697xrc40lxxin315cf3gm0cka"; depends=[crayon dplyr ggplot2 magrittr purrr R6 tibble tidyr]; }; - cassandRa = derive2 { name="cassandRa"; version="0.1.0"; sha256="0rwqzxbflxn1iyggm3mq6pkbl61mhk4vdwqwzlwrhrvvr2ib236r"; depends=[bipartite boot dplyr ggplot2 magrittr purrr reshape2 tidyr vegan]; }; + cassandRa = derive2 { name="cassandRa"; version="0.2.0"; sha256="19ar7yyigxgn05f9a594b161znjvdczn7gzlajjjc3dq1ccxw84b"; depends=[bipartite boot dplyr ggplot2 magrittr purrr reshape2 rlang tidyr vegan]; }; cassowaryr = derive2 { name="cassowaryr"; version="2.0.0"; sha256="1gk54haciy3vj7xj6cji1v90xh7g8790zq1rykyispx09jr2dpx3"; depends=[alphahull dplyr energy ggplot2 igraph interp magrittr progress splancs tibble tidyselect]; }; castor = derive2 { name="castor"; version="1.8.0"; sha256="0caw206hndfzypj33w6npvppdc5hhq1q71wriqd0ck9f238rfi3c"; depends=[jsonlite Matrix naturalsort Rcpp RSpectra]; }; cat = derive2 { name="cat"; version="0.0-9"; sha256="1wz6mbjzx03267yrszjimcd8yi82z2nfwyvz6l1ry2l300hv2qfs"; depends=[]; }; @@ -7507,25 +7650,25 @@ in with self; { catIrt = derive2 { name="catIrt"; version="0.5.1"; sha256="1wagk9f9mvf3b5yvwpas9yqjzpcp786d37wn71jj1af0khry8k62"; depends=[numDeriv]; }; catR = derive2 { name="catR"; version="3.17"; sha256="178pq6cy3kjpd7mpaky2y8f18561gsf727y0y6rmgm2bn71p2i76"; depends=[]; }; catSurv = derive2 { name="catSurv"; version="1.5.0"; sha256="0jw7jlam7d44g9sbwmxckm4mywhky2a6h1w5w849g47p7mvi32dc"; depends=[BH jsonlite ltm plyr Rcpp RcppArmadillo RcppGSL RcppParallel]; }; - cata = derive2 { name="cata"; version="0.1.0.5"; sha256="0fjnyw2kbvvqagc12in7j963jqy5y93rm97wly1vdl7i6dxlhh7g"; depends=[]; }; + cata = derive2 { name="cata"; version="0.1.0.6"; sha256="077sk9gd84b6vnp25bm6bxbbqjsmigvzndrpgh3p7a11i8377xqc"; depends=[]; }; catalog = derive2 { name="catalog"; version="0.1.1"; sha256="1j43c34qdklv8pskaidq5fxrygv9lngamdcrkij9c844qj7iff14"; depends=[dplyr sparklyr]; }; catch = derive2 { name="catch"; version="1.0.1"; sha256="1a63d1a6pzzirdzswngjj036jmg41hbiadwriws7k05qp95jdh6a"; depends=[MASS Matrix tensr]; }; catcont = derive2 { name="catcont"; version="0.5.0"; sha256="0ix6ipm3nn9aq5vxirjga2kwwfnxn4v8ggfjlg5v9027v2r8rb96"; depends=[dplyr]; }; catdap = derive2 { name="catdap"; version="1.3.7"; sha256="0z84bx808hy70bkzdda9l42ljh9i9pz07isxq756axi7nr0ky6p9"; depends=[RColorBrewer]; }; catdata = derive2 { name="catdata"; version="1.2.4"; sha256="1gvibnjfrjdsxx4jks29hhk3dfsm23nxnbwd5p8w67nxr4n6qn0w"; depends=[MASS]; }; - cate = derive2 { name="cate"; version="1.1.1"; sha256="0wqfblyr7rjx9wnpbnv5lw2zv7nw3mbdjn866l1ng779vka1wdc5"; depends=[corpcor esaBcv leapp MASS Matrix ruv sva]; }; categoryEncodings = derive2 { name="categoryEncodings"; version="1.4.3"; sha256="0ns8ml2hm41650bi8yag6w3k9nb2ky43370444cgy3i7ajpzw87w"; depends=[data_table glmnet sparsepca]; }; catfun = derive2 { name="catfun"; version="0.1.4"; sha256="1482rll333fvy4h58f15flfs7qrck3vk9bzpdn3hayhnmc7svmma"; depends=[broom cli DescTools epitools Hmisc magrittr rlang]; }; cati = derive2 { name="cati"; version="0.99.4"; sha256="02g33kkp97kswiyjsd378zpa3fc9rjk2d9f4l1gdh7pzglabsmgl"; depends=[ade4 ape e1071 FD geometry hypervolume nlme rasterVis vegan]; }; catlearn = derive2 { name="catlearn"; version="1.0"; sha256="1bzzzqprgyskkf1dnb5k4pqkdn5m67a3pxbnk1cnhscagcjndvy6"; depends=[doParallel dplyr foreach Rcpp RcppArmadillo tidyr]; }; catmap = derive2 { name="catmap"; version="1.6.4"; sha256="18449qh10jxfi8p49gmbnib5y013nfdgdblbs4n0mfs0nnzb10sx"; depends=[forestplot metafor]; }; catmaply = derive2 { name="catmaply"; version="0.9.4"; sha256="1vjnh0qvqdfsv4p28yg5r4s9m0l0d7f1r07vamlhvhshb5cfnmsy"; depends=[dplyr magrittr plotly rlang tidyr]; }; + catregs = derive2 { name="catregs"; version="0.2.0"; sha256="1d5a8mwwyxx6rmm4ngjkgy787x23l9a0crhvn594vhl90r92jpbi"; depends=[]; }; cats = derive2 { name="cats"; version="1.0.2"; sha256="0snc5vrf8qm53yd42gskhnpp6lfgfkldgpjj3jbcry0wpbfc0dv0"; depends=[doParallel dplyr epitools forcats foreach ggplot2 mvtnorm openxlsx plotly purrr tidyr zoo]; }; catseyes = derive2 { name="catseyes"; version="0.2.5"; sha256="11n2kxkqv4hqymkj6lkpcvhq6325q8f5w384xf8zb71jl8vx616l"; depends=[]; }; catsim = derive2 { name="catsim"; version="0.2.3"; sha256="1gz38xrzbray5ciiimkzdass8bhmiqxh6bcngjm5i8dvafk5gf9g"; depends=[Rcpp testthat]; }; cauchypca = derive2 { name="cauchypca"; version="1.3"; sha256="157ydm2vizv7cwvxi7id7wws7v0h3iymgwsbvk13q4jlk8ygnnqn"; depends=[doParallel foreach Rfast Rfast2]; }; cauphy = derive2 { name="cauphy"; version="1.0.2"; sha256="1jyw6pq17fzpkp6c68cbc7y5bs1y1xhnvd49j7kkypn7ziglpm9s"; depends=[ape doParallel foreach HDInterval nloptr phylolm pracma robustbase]; }; - causact = derive2 { name="causact"; version="0.5.4"; sha256="089cl591xxyi8ryfv2c2gp5r74p653qcaspxysn8sgmsyg7jz4qr"; depends=[cowplot DiagrammeR dplyr forcats ggplot2 igraph lifecycle magrittr purrr reticulate rlang rstudioapi stringr tidyr]; }; + causact = derive2 { name="causact"; version="0.5.5"; sha256="0sf32v47n18sf3x5f08pzl7mc66g95fw6nym02vvyr6a30zv1b5b"; depends=[cowplot DiagrammeR dplyr forcats ggplot2 igraph lifecycle magrittr purrr reticulate rlang rstudioapi stringr tidyr]; }; causal_decomp = derive2 { name="causal.decomp"; version="0.1.0"; sha256="12iy64dnb91l47vai9qawlwvg17x5amqg0kdj8npk1mgzm2zfz4j"; depends=[CBPS MASS nnet PSweight spelling SuppDists]; }; causalBatch = derive2 { name="causalBatch"; version="1.2.0"; sha256="0jq5a6ch12v55x8fwz6as43wb4q5nc56hqb97jcsgksvsy9cn2g3"; depends=[cdcsis dplyr magrittr MatchIt nnet sva]; }; causalCmprsk = derive2 { name="causalCmprsk"; version="2.0.0"; sha256="079wr4w30153hxvk2q9ki19h54p8vyvc1y6ka8j5vk6rcf8gmg5l"; depends=[data_table doParallel foreach inline purrr survival]; }; @@ -7541,7 +7684,7 @@ in with self; { causalsens = derive2 { name="causalsens"; version="0.1.3"; sha256="0gmy24vp50xfl4qrnn314svyic8fhqnfhr43zwbcbgipf877hdvh"; depends=[]; }; causalweight = derive2 { name="causalweight"; version="1.1.0"; sha256="1i01909zfvrxyjpl1zl58s2y3b27xd1rbi3yhmzqlw9q0yxlbnn8"; depends=[checkmate e1071 fastDummies glmnet grf hdm LARF mvtnorm np ranger SuperLearner xgboost]; }; caviarpd = derive2 { name="caviarpd"; version="0.3.9"; sha256="0dd1z7n06k578rz985hvpa9h8axik93fil1qysjx98faszxxnk2r"; depends=[]; }; - cba = derive2 { name="cba"; version="0.2-23"; sha256="18al5kavn3q2h6gl4s1hgxhy9ysv9fq602ffmzla251g380b166n"; depends=[proxy]; }; + cba = derive2 { name="cba"; version="0.2-24"; sha256="0lhx813wpb544p9akaj89hmfx95ka46h6xykxly0dpf7ck00brsh"; depends=[proxy]; }; cbanalysis = derive2 { name="cbanalysis"; version="0.2.0"; sha256="0h0h8krlb6rckjpcw0jbbr8pcy3jm0cszimbm56l0ca668kiix06"; depends=[]; }; cbass = derive2 { name="cbass"; version="0.1"; sha256="1x7k9srf2jgjhlha9fjm7rfcd9msk05nxa3p7657ns8y2v12s0nq"; depends=[]; }; cbcTools = derive2 { name="cbcTools"; version="0.5.0"; sha256="07has80n7n23y2y3shalps1hkw1r8f4fld1r48g42fdrwkhhf6jw"; depends=[AlgDesign DoE_base fastDummies ggplot2 idefix logitr MASS randtoolbox rlang]; }; @@ -7556,7 +7699,8 @@ in with self; { cccd = derive2 { name="cccd"; version="1.6"; sha256="0cxh19jqappc6zq9nz3m40ybdmsp12mf7yvflsz96wks3ly2ld4y"; depends=[deldir FNN igraph proxy]; }; cccm = derive2 { name="cccm"; version="0.1.0"; sha256="1spwv5crmaysw19c2rq3cri2kmrfzqcb1wjdpri1ih6sgcg039gi"; depends=[dplyr rlang]; }; cccp = derive2 { name="cccp"; version="0.3-1"; sha256="06ds1f954m2g3g85rccpvk1bhxqn544qqxg7wzs4jkb97h590dzn"; depends=[Rcpp RcppArmadillo]; }; - cccrm = derive2 { name="cccrm"; version="2.2.1"; sha256="1mvnidwwa5nq00ca6l64m0h7dkvm32r9ymrqpjqnyrimr0mfxgl6"; depends=[Deriv dplyr nlme tidyselect]; }; + cccrm = derive2 { name="cccrm"; version="2.2.2"; sha256="1byrz0npvchdzbp10z7blz13680x7d5yak9mmagn4q3w8wclpl7x"; depends=[Deriv dplyr nlme tidyselect]; }; + ccdR = derive2 { name="ccdR"; version="1.0.0"; sha256="04g8i39p11yyrrgs3lpwj095hnyncdljyz4mxsl9pcql4hwp4v39"; depends=[cli data_table httr jsonlite purrr rlang stringr tibble tidyr urltools]; }; ccda = derive2 { name="ccda"; version="1.1.1"; sha256="1kka4vmhpcnl4skdmijzsxrfj6dgax6hhlxvp7gkqlfaazq8pzf0"; depends=[MASS]; }; cchs = derive2 { name="cchs"; version="0.4.4"; sha256="14qmh4jb9i0imjkb33x61q074zsrng3acy52cw9p0zsxrbh4gdf5"; depends=[survival]; }; cchsflow = derive2 { name="cchsflow"; version="2.1.0"; sha256="1cnf1xcwz86nzzgk998m3icdvb799hnj7dzcmhv26gjvix1dqj2g"; depends=[dplyr haven magrittr sjlabelled stringr]; }; @@ -7579,7 +7723,7 @@ in with self; { cdcsis = derive2 { name="cdcsis"; version="2.0.3"; sha256="0hv52valyig3zzywm3058c5nxb2n7y3j2vfibxdbfg8414wwapd9"; depends=[ks mvtnorm Rcpp]; }; cder = derive2 { name="cder"; version="0.3-1"; sha256="0h44yifiy0fqrmfpri0had1ps5d1jj1dgwllha5ng04rjwlvxpzz"; depends=[curl dplyr glue lubridate readr stringr]; }; cdfquantreg = derive2 { name="cdfquantreg"; version="1.3.1-2"; sha256="1abbr14fqn56c4yqrz1qbzq03xl5qi6px29wljd3yzysypvh9his"; depends=[Formula MASS pracma]; }; - cdgd = derive2 { name="cdgd"; version="0.3.4"; sha256="1wyd3hmfgn9xkkrgl9iqqzybxmh0v7iyq2awi2w8ckz50glwd4sp"; depends=[caret]; }; + cdgd = derive2 { name="cdgd"; version="0.3.5"; sha256="10cd1s06k2hcvzjsibz1nask7n22x98s0cpi1j0l974s1j426wzy"; depends=[caret]; }; cdlTools = derive2 { name="cdlTools"; version="1.13"; sha256="0cxk4n0csg64479bz8xrpfg8mixwx7pb5sl5gwkrkl6pd256rw86"; depends=[httr raster rvest stringr terra]; }; cdlei = derive2 { name="cdlei"; version="1.0"; sha256="1zsgryrwr1nqhcyizrh67lm953b87ih9l4rvc6i59s4vg2ph1ph1"; depends=[]; }; cdmTools = derive2 { name="cdmTools"; version="1.0.5"; sha256="0nd15lr8hdin8qnxykway70irvfi239rm4jx3ck253l7igswiz7s"; depends=[combinat doSNOW foreach fungible GDINA ggplot2 GPArotation psych sirt]; }; @@ -7588,6 +7732,7 @@ in with self; { cdrcR = derive2 { name="cdrcR"; version="0.1.1"; sha256="13fd936by6b47hlbwidv0jdqav6c4r2llgf3cajvivlpi98vk7c7"; depends=[dplyr httr jsonlite magrittr purrr rjson rlang rlist sf tidyr tidyselect]; }; cds = derive2 { name="cds"; version="1.0.3"; sha256="1h34k96h7ajkaqsw4dlqri63hrbnshaqwrdl74wlgycdlbvrqj05"; depends=[clue colorspace copula limSolve MASS]; }; ceRtainty = derive2 { name="ceRtainty"; version="1.0.0"; sha256="01wgvjpxqwhgh6vx9vbmiv4d88bps790l6ij3gw5w69hbrrd9ixi"; depends=[dplyr RColorBrewer tidyr]; }; + ceas = derive2 { name="ceas"; version="1.0.0"; sha256="0xxinxavqkfg3zfl62mz64msivr5j8l88sshqc1z56kxldyv0xfn"; depends=[data_table ggplot2 readxl]; }; ceg = derive2 { name="ceg"; version="0.1.0"; sha256="01la7kv0a3inc9vy5x010ysicfiv404bqfgs8csvqixviap9rd74"; depends=[graph Rgraphviz]; }; celestial = derive2 { name="celestial"; version="1.4.6"; sha256="1gls0qvr8mxz79lsmk76v253f747g0cqys8p8wjmpijs8r0pyr4z"; depends=[NISTunits pracma RANN]; }; cellKey = derive2 { name="cellKey"; version="1.0.2"; sha256="1brl0747mr9wpk0q299d55z94zhq2783nad1lanm5ia39r0x8i22"; depends=[cli data_table digest ptable rlang sdcHierarchies sdcTable yaml]; }; @@ -7596,23 +7741,22 @@ in with self; { cellWise = derive2 { name="cellWise"; version="2.5.3"; sha256="0asimy253lxm9yf47pynhxc7sfd3v5rkvnyf1sby7s4qkz06bh49"; depends=[ggplot2 gridExtra matrixStats Rcpp RcppArmadillo reshape2 robustbase rrcov scales shape svd]; }; cellpypes = derive2 { name="cellpypes"; version="0.3.0"; sha256="1px7p1xly71p48w72m5fcs2krxba72slnh638wpd98a52clbgz6l"; depends=[cowplot dplyr ggplot2 Matrix rlang scales scattermore scUtils viridis]; }; cellranger = derive2 { name="cellranger"; version="1.1.0"; sha256="16fgi3annn34c3cxi0pxf62mmmmxi21hp0zzlv7bkfsjqy4g4f2x"; depends=[rematch tibble]; }; - celltrackR = derive2 { name="celltrackR"; version="1.1.0"; sha256="08hbgpwcpf7v8l7qmszhjh0w4f4zjcizrdsxksihxpwdi9r4al3w"; depends=[ellipse pracma]; }; + celltrackR = derive2 { name="celltrackR"; version="1.2.0"; sha256="1y0bdn75malabyrnrqrw5vh2sr6j09hpy8gbk1vnmkbvg9dy2xh3"; depends=[ellipse pracma]; }; cem = derive2 { name="cem"; version="1.1.31"; sha256="1ylzsx2km9lf3x1rchwgs3nd8dzrac81f2jnd4qri35zvlilh1c6"; depends=[combinat lattice MatchIt nlme randomForest]; }; cemco = derive2 { name="cemco"; version="0.2"; sha256="172raa62i34d1vzsgy84h3b7mmdzvg9h657fcmgrlhlkwqzx0gyl"; depends=[doParallel foreach MASS mclust mvtnorm nnet rootSolve]; }; cenGAM = derive2 { name="cenGAM"; version="0.5.3"; sha256="0qic2g2bq24k9jimxdk8g7bsmi4br2r6159ipdhh5ym81ji3sf5p"; depends=[mgcv]; }; cenROC = derive2 { name="cenROC"; version="2.0.0"; sha256="1rgs1h32jm7ls830f62gi5wdaqx3q2h4m4qirxqmv0pi8y5y2a9v"; depends=[condSURV icenReg Rcpp RcppEigen survival]; }; cencrne = derive2 { name="cencrne"; version="1.0.0"; sha256="1s5d6k01wlxs248wf9k77qxwnvaivxzsighsfdmd1hrf0klbwy5z"; depends=[MASS Matrix]; }; censCov = derive2 { name="censCov"; version="1.0-0"; sha256="0i9vmyi12f1m5xnrl4cxk3z9qv7ymzxsyf4gbnpg1ph63yfnhv3g"; depends=[survival]; }; - censReg = derive2 { name="censReg"; version="0.5-36"; sha256="0r8pyscsw3m8lf6mx70sjk70k7i1jfjkk2qzq19m85q3byx447n6"; depends=[glmmML maxLik miscTools plm sandwich]; }; + censReg = derive2 { name="censReg"; version="0.5-38"; sha256="1rrgvq883970zp311lmkvxxky29w48p54xa4hq7iaa33yq7dbmmb"; depends=[glmmML maxLik miscTools plm sandwich]; }; censable = derive2 { name="censable"; version="0.0.5"; sha256="15p4ggnkcddm2lglf798bcjghppx0pqzc8nyljyiw0hwsw14c7yg"; depends=[censusapi dplyr magrittr memoise purrr rlang sf stringr tibble tinytiger]; }; censo2017 = derive2 { name="censo2017"; version="0.6.2"; sha256="0rj3a9i6faqsrx641p1nacdprfnzp8q45khpdrakmfnc7l40xh87"; depends=[cli crayon DBI duckdb httr purrr rstudioapi tibble]; }; censobr = derive2 { name="censobr"; version="0.3.2"; sha256="0bjrlcfzdymkp2nhrnr8ilw2xcgl9fkv47m2wlffb8ay5mlkar26"; depends=[arrow checkmate dplyr httr]; }; censorcopula = derive2 { name="censorcopula"; version="2.0"; sha256="16pk4xlpliif02qznrhvl8qmrr6k4kknygqxcm83nsjxy6dcyga8"; depends=[copula]; }; - censored = derive2 { name="censored"; version="0.3.0"; sha256="10vsba7c7zcqgm3xzhkyaxhv6hdg69gxa5xsqyn6ycx692a97rjy"; depends=[cli dials dplyr generics glue hardhat lifecycle mboost parsnip prettyunits prodlim purrr rlang survival tibble tidyr]; }; + censored = derive2 { name="censored"; version="0.3.2"; sha256="171bfny4d8p8i82xv0mj315imb9ghvn2jzvirqmkm6k0cxmaqyrz"; depends=[cli dials dplyr generics glue hardhat lifecycle mboost parsnip prodlim purrr rlang survival tibble tidyr]; }; censusapi = derive2 { name="censusapi"; version="0.8.0"; sha256="1wswd6kmb0fbyc3zs3q3dhhaa1la1z5alz4vg485ac9wacnab60r"; depends=[httr jsonlite]; }; censusr = derive2 { name="censusr"; version="0.0.4"; sha256="1n9571fyr46wj1dcxc2xgns9865655yzlq7yfz8im014wh0ycwqc"; depends=[dplyr httr stringr]; }; centiserve = derive2 { name="centiserve"; version="1.0.0"; sha256="1m6gqz2rk7023340laa5pc0ncbfka2qi9ajvh65fwijd7xvv3n5c"; depends=[igraph Matrix]; }; - centralplot = derive2 { name="centralplot"; version="0.1.0"; sha256="1slzvbm1vvgj1gkcx9pb46fz8q55vfyqrxsvx4qzi5kp7d9h4dy2"; depends=[ggplot2]; }; centrifugeR = derive2 { name="centrifugeR"; version="0.1.7"; sha256="078rm1i1qqx15qj75yajc11zfsnp6mcb391v5vc0dl03xjzsiz7q"; depends=[pracma shiny shinythemes]; }; cepR = derive2 { name="cepR"; version="0.1.2"; sha256="02dj6vyfgc0lsgclbsmzpms1hnnwb3yjdayim7b7vpciym2c8ww3"; depends=[dplyr httr magrittr purrr tibble]; }; cepiigeodist = derive2 { name="cepiigeodist"; version="0.1"; sha256="0i1i8hyl4bkcyxrrfqs3m9yny33w0i33409f4kx83wfnablc54sv"; depends=[]; }; @@ -7627,20 +7771,19 @@ in with self; { cetcolor = derive2 { name="cetcolor"; version="0.2.0"; sha256="0kygdcr9ldanr0z4qpygwh0padki7s2ad0j6myky601g4228z79q"; depends=[]; }; ceterisParibus = derive2 { name="ceterisParibus"; version="0.4.2"; sha256="0hxklydsqb69y5sv2hanp5ja9k0063swf5si1j6gcj15lp7phpif"; depends=[DALEX ggplot2 gower knitr]; }; cfa = derive2 { name="cfa"; version="0.10-1"; sha256="1hmahwi60qiwf4g50d3cnhgvdbnv0q0shfalzxisv87xxr586mlj"; depends=[]; }; - cfbfastR = derive2 { name="cfbfastR"; version="1.9.0"; sha256="0b5zagk5nwmq5gn3m3sva8ns7pbp5iqhkyfcwv3xf95qbshvpz6b"; depends=[cli data_table dplyr glue httr janitor jsonlite magrittr mgcv nnet progressr purrr Rcpp RcppParallel rlang stringr tibble tidyr]; }; cfda = derive2 { name="cfda"; version="0.11.0"; sha256="03w2vfgjf29qn40slqfpd54dmvzql53lc9j7n51ggg7bjchrg2x0"; depends=[diagram fda ggplot2 mgcv msm pbapply]; }; cfdecomp = derive2 { name="cfdecomp"; version="0.4.0"; sha256="0g61gpihk5kbbrqzn15fqjv3bawsq1vq3sdssbzs5j96afmf2aq8"; depends=[]; }; cffdrs = derive2 { name="cffdrs"; version="1.9.0"; sha256="0y4w045fgn1q63w9bk4qwzzxij34agjsg396vmydljz3w86insib"; depends=[data_table doParallel foreach geosphere sf terra]; }; - cffr = derive2 { name="cffr"; version="1.0.0"; sha256="1vmgxj59iyhmfbr1vjisr8ml9ql2i1pi0wlhm3gz3cwng3cwb392"; depends=[cli desc jsonlite jsonvalidate yaml]; }; + cffr = derive2 { name="cffr"; version="1.0.1"; sha256="1h8kk2zjp5c86a2r64ad88zs1w80gc5x8dlr4a16h9w6r98zjxpd"; depends=[cli desc jsonlite jsonvalidate yaml]; }; cfid = derive2 { name="cfid"; version="0.1.7"; sha256="03wfzilxgia12hacwkay2ki94mha8b42g62cx66x1rkqqxgcp6n9"; depends=[]; }; cfma = derive2 { name="cfma"; version="1.0"; sha256="006z5g3rqpg44jqdf6ivyxr47sxm5cd9cqhayfi8qk73xx5w4lv9"; depends=[]; }; cfmortality = derive2 { name="cfmortality"; version="0.3.0"; sha256="0dgwv89fzylznc6jr41ixzfs1gfs3np4gf46bk6pcd09l1kbx3lc"; depends=[]; }; cforward = derive2 { name="cforward"; version="0.1.0"; sha256="1vhac0669f20ckx7qi5v8rnbmscb87gw8rfn555xazdfbvri6m0w"; depends=[dplyr magrittr survival tibble]; }; - cfr = derive2 { name="cfr"; version="0.1.0"; sha256="1qy25jfzpsk4zfcgjlw188a40vvj478r4g7pwrwxw4ppcqrncxny"; depends=[checkmate]; }; + cfr = derive2 { name="cfr"; version="0.1.1"; sha256="0gvajvwriiird3symkln0z52k9v1rz3bh4yvdg0xh1lqhylr165b"; depends=[checkmate]; }; cft = derive2 { name="cft"; version="1.0.0"; sha256="1jfp1dx15bs9c8c11ja80ga99m2d9q9j5sgdjkwvs23vjqdwi13a"; depends=[dplyr epitools furrr future magrittr osmdata pipeR plyr rlang rlist sf tidync tidyr]; }; cg = derive2 { name="cg"; version="1.0-3"; sha256="1kbyal1sicbr10yvxpwgcij710kqpi23vmndp9kyfzn3k8zfird3"; depends=[Hmisc lattice MASS multcomp nlme rms survival VGAM]; }; cgAUC = derive2 { name="cgAUC"; version="1.2.1"; sha256="172f9rkfhv4xzwpw8izsnsdbcw9p3hvxhh0fd8hzlkil7vskr3k8"; depends=[Rcpp]; }; - cgaim = derive2 { name="cgaim"; version="1.0.0"; sha256="0bi8rmykgynkkbpkvm3n9ihl8x41n4msgz17ilwpa1xw9lf3pcj6"; depends=[cgam coneproj doParallel foreach gratia limSolve MASS Matrix mgcv osqp quadprog scam scar TruncatedNormal]; }; + cgaim = derive2 { name="cgaim"; version="1.0.1"; sha256="1krs61rbnz7v4pncbjlil4728x5xyz5vzbyj487njbmqgymq10wl"; depends=[cgam coneproj doParallel foreach gratia limSolve MASS Matrix mgcv osqp quadprog scam scar TruncatedNormal]; }; cgal4h = derive2 { name="cgal4h"; version="0.1.0"; sha256="0ghcwjfqlhqysnl8mgz6zp7dyqh8pvnpvphwjwk6zqi24n3nhac2"; depends=[]; }; cgam = derive2 { name="cgam"; version="1.21"; sha256="0dsiwam9fgvri14hznnplxcjj0f8ibi8vf64wryq3pcvi41di082"; depends=[coneproj lme4 Matrix statmod svDialogs]; }; cglasso = derive2 { name="cglasso"; version="2.0.7"; sha256="18j50f6ghk7vjr3xfw8j1nh42l6rm8kd5c6jcvll2rjbvq5vn571"; depends=[igraph MASS]; }; @@ -7649,9 +7792,11 @@ in with self; { cgmquantify = derive2 { name="cgmquantify"; version="0.1.0"; sha256="11pw1layzx9a8qy7n06nyc59mi5r07krhxw6hhybbqkdglzp511w"; depends=[dplyr ggplot2 hms magrittr tidyverse]; }; cgwtools = derive2 { name="cgwtools"; version="4.1"; sha256="0nw9zmbx3d7jqvw0yjqnqxnk16fay5pg4hws6qk341ipixwfmcbf"; depends=[gmp]; }; ch = derive2 { name="ch"; version="0.1.0.2"; sha256="1ryh2xr1ix4qznq1svi4gdr4qy6v6rg597z2zl6zw32s2xq6ssx6"; depends=[clipr crayon ggplot2 magrittr MASS polynom pracma Ryacas]; }; + chainbinomial = derive2 { name="chainbinomial"; version="0.1.5"; sha256="1qs1bcql1xcb1qh35spr4j0vk6gwwjc3c0sb1y6vy0vh9z5mz6p8"; depends=[generics]; }; chameleon = derive2 { name="chameleon"; version="0.2-3"; sha256="0a3azp0zaakpqqx0pp94hkj3vgb2apnf8gb5ga0as4i8lrn9dz8i"; depends=[clue ggplot2 umap]; }; chandwich = derive2 { name="chandwich"; version="1.1.6"; sha256="03qcqw9xx8mw7hymjl3ym6l1adgw5ssv0pmcmdv2hk230mx2fsld"; depends=[numDeriv]; }; changeRangeR = derive2 { name="changeRangeR"; version="1.1.0"; sha256="0y13wwz62wsh29flb7v094gb47gd6xwjq6fvmkzmlhz8x71f5g1v"; depends=[dplyr phylobase rangeModelMetadata raster sf sp]; }; + changeS = derive2 { name="changeS"; version="1.0.1"; sha256="1igd2qvs5y2g63byvwn0djbgc5lqi9zx7a0g2dkda1q6snl65yi7"; depends=[ggplot2 nls_multstart stringr]; }; changepoint = derive2 { name="changepoint"; version="2.2.4"; sha256="16v4p2c9zi2w3anwf5y9snl5dy1g5aidiqz1vn2p64qhfvg6yqxc"; depends=[zoo]; }; changepoint_geo = derive2 { name="changepoint.geo"; version="1.0.2"; sha256="0zwj4wwwh99diz0vn5f06ygs93afahnn5glvab2k7wgk2qyf5jgq"; depends=[changepoint changepoint_np ggplot2 Rdpack]; }; changepoint_influence = derive2 { name="changepoint.influence"; version="1.0.2"; sha256="0mlr1k7mbi2v4vd0ry4if5j6x638znj0kbfvwr20p6m6wmd0ln0a"; depends=[changepoint data_table ggplot2 gridExtra reshape]; }; @@ -7665,7 +7810,8 @@ in with self; { chartql = derive2 { name="chartql"; version="0.1.0"; sha256="108csn7q8qrjhiss54f5bliv3av7psq7kfryspajbdb6wm9ciz3p"; depends=[ggplot2 stringr]; }; chatAI4R = derive2 { name="chatAI4R"; version="0.2.10"; sha256="0iil1bl6l89lckxh4bdxjnjnww2h8q4gd83b29rbw4xfa1mlb8rb"; depends=[assertthat clipr crayon deepRstudio future httr igraph jsonlite pdftools rstudioapi rvest xml2]; }; chatgpt = derive2 { name="chatgpt"; version="0.2.3"; sha256="1a71rzim5x40lnb7pc5n0b9j56kg96cjw7x4liqkbn84n61db6ff"; depends=[clipr httr jsonlite miniUI rstudioapi shiny]; }; - cheapr = derive2 { name="cheapr"; version="0.3.0"; sha256="0qmnfhxgzn4gcn2wx7zwz30kj5zgvcs7dfkayrarf9qmm9ys8rnd"; depends=[collapse cpp11]; }; + chattr = derive2 { name="chattr"; version="0.1.0"; sha256="0sgaanmvnmcqn57ks7xdc3bvdzifrkqkz6bpjq8978jrpysxm2cw"; depends=[bslib callr cli clipr config fs glue httr2 jsonlite lifecycle processx purrr rlang rstudioapi shiny yaml]; }; + cheapr = derive2 { name="cheapr"; version="0.9.2"; sha256="06slf0b5qv8ypmcyw6r7ip3sgx6x44bvwy0zgfwhm8kawkjxir24"; depends=[collapse cpp11]; }; cheatsheet = derive2 { name="cheatsheet"; version="0.1.2"; sha256="0nhyz354hxnqbs3iwvaisssr4ciq6vary3ldkm8yanpdyw0p1k27"; depends=[cli crayon fs git2r magrittr purrr rstudioapi]; }; checkLuhn = derive2 { name="checkLuhn"; version="1.1.0"; sha256="1s1ix5n98bcbzcvrz5h19sk9pchdvrhpy3ppmw96ys8vylzm58mv"; depends=[dplyr stringr]; }; checkarg = derive2 { name="checkarg"; version="0.1.0"; sha256="0rkdjs2c4yx9laqgayxz57bwxhwgdh6ndrr4i3b1kh31lcmk1xc6"; depends=[]; }; @@ -7683,7 +7829,6 @@ in with self; { chem16S = derive2 { name="chem16S"; version="1.0.0"; sha256="0a4r1sca2fsadaz3bmkrkylbdabwjw2ja6p9s9hgkgg4k6h3vslr"; depends=[ggplot2 phyloseq plyr reshape2 rlang]; }; chemCal = derive2 { name="chemCal"; version="0.2.3"; sha256="0f0d0ljym745scnfdx0n0jp86g4r51gylcab3h7ykpaizgpah24r"; depends=[]; }; chemdeg = derive2 { name="chemdeg"; version="0.1.2"; sha256="0ipj7988bwrcz489wa5mx789aw9dij6003rbdndbl3m2r3hi9pnv"; depends=[MASS]; }; - chemmodlab = derive2 { name="chemmodlab"; version="2.0.0"; sha256="01af0j24vymxiqahwhcf4kp0x603yllvlgcxnybsi2wnzm71swk7"; depends=[caret class e1071 elasticnet KernSmooth lars MASS MSQC nnet pls pROC randomForest rpart tree]; }; chemodiv = derive2 { name="chemodiv"; version="0.3.0"; sha256="07y8wvi5vh5apvg57pd2q5rqvpxm0h3v899n12r76gwvj8z1a28s"; depends=[ape ChemmineR curl fmcsR ggdendro ggplot2 ggraph gridExtra GUniFrac hillR httr igraph jsonlite rlang tidygraph tidyr vegan webchem]; }; chemometrics = derive2 { name="chemometrics"; version="1.4.4"; sha256="10d8g8sgck6v2cgkv988yiawv9vrziyqsrhagmkzf7rjpqgdn3px"; depends=[class e1071 lars MASS mclust nnet pcaPP pls robustbase rpart som]; }; cherry = derive2 { name="cherry"; version="0.6-14"; sha256="03ipvd2ldzk7xsalkgcx0cyp9cp9b8qqjvz8nl0am412j3z9i5wg"; depends=[bitops hommel lpSolve]; }; @@ -7691,11 +7836,12 @@ in with self; { chess = derive2 { name="chess"; version="1.0.1"; sha256="0b0lz8r48bvksjnh385p1ni22hw1yvs6255pjbpj49ga9dwziin0"; depends=[cli magrittr purrr reticulate rsvg]; }; chessboard = derive2 { name="chessboard"; version="0.1"; sha256="0w58zbiz9gw18ixcp3j23ys52xx5i4wrjhixiy4brc5b5h1i8mdi"; depends=[dplyr ggplot2 magrittr rlang sf tidyr]; }; chest = derive2 { name="chest"; version="0.3.7"; sha256="0905xl1vqn8icvf44vydhd00wvz5cdnl2igr7m0jmrsv564zdj5a"; depends=[broom dplyr forestplot ggplot2 MASS survival tibble]; }; - chevron = derive2 { name="chevron"; version="0.2.5"; sha256="0djd3zx4g5m8jkys8dbmxypdlnl0lnbg6qrjyyf0qbjsqipwp1yi"; depends=[checkmate dplyr dunlin forcats formatters ggplot2 glue lifecycle magrittr nestcolor purrr rlang rlistings rtables stringr tern tibble]; }; + chevron = derive2 { name="chevron"; version="0.2.6"; sha256="05h8bjgjh8nj81yynidywvahhnxjnjpd3l248kxs503dhj9flqi9"; depends=[checkmate dplyr dunlin forcats formatters ggplot2 glue lifecycle magrittr nestcolor purrr rlang rlistings rtables stringr tern tibble]; }; chi = derive2 { name="chi"; version="0.1"; sha256="1y91mwahj4j2wz0y5k5vdpq7ygq834h8jkn37n74lqnwvv1968rr"; depends=[]; }; chicane = derive2 { name="chicane"; version="0.1.8"; sha256="0963r5jzyjihidh18ny9nqkim00bys3psdgrxhbah43bbl0kx43r"; depends=[bedr data_table doParallel foreach gamlss gamlss_tr iterators knitr MASS rmarkdown]; }; childdevdata = derive2 { name="childdevdata"; version="1.1.0"; sha256="016x6xhqq1mfqlj9m5qv63k639xnqnrf5h6rdcyaa8sxn7nv34zm"; depends=[]; }; childesr = derive2 { name="childesr"; version="0.2.3"; sha256="1a58s0zph4mfmh9sdfbv7yaa20lx5gi0mca0ikzarfwxjl5knp39"; depends=[DBI dbplyr dplyr jsonlite magrittr purrr RMySQL]; }; + childfree = derive2 { name="childfree"; version="0.0.1"; sha256="0p1b1bi6shkg2lzl0q07al80sc5gw3yrz3cj8sp5rfpnrfa12ard"; depends=[rio]; }; childsds = derive2 { name="childsds"; version="0.8.0"; sha256="1vv02kbw17b8zva2yc1qgi750z9yhyfv5xbig29dhyzvj8k00yvb"; depends=[boot class dplyr gamlss gamlss_dist magrittr purrr purrrlyr reshape2 tibble tidyr VGAM]; }; chilemapas = derive2 { name="chilemapas"; version="0.3.0"; sha256="00v99y02fnxzn2ysbc2fbkdfirfl1276q8d7csi18kbym3vwqmq9"; depends=[dplyr magrittr rlang rmapshaper sf stringr]; }; chillR = derive2 { name="chillR"; version="0.75"; sha256="0b8r8s7vqgpb6jjbqaf24yig2adagfl6rnnppx15mdhz8bmjc5aq"; depends=[assertthat dplyr ecmwfr fields GenSA ggplot2 httr jsonlite Kendall lubridate magrittr metR patchwork pls plyr progress purrr R_utils raster Rcpp RCurl readxl reshape2 rlang RMAWGEN scales stringr tidyr XML]; }; @@ -7720,7 +7866,7 @@ in with self; { chouca = derive2 { name="chouca"; version="0.1.99"; sha256="1gnilv8ww106mz5wnry826gysgsaq7mvd83ms0j5jhkkqmsqy2dd"; depends=[digest plyr Rcpp RcppArmadillo]; }; christmas = derive2 { name="christmas"; version="1.3.0"; sha256="0gqyxvhx8nvcrjxqrybvxyc3dgwvd3z9ln4fig6q3zamfpdmljb7"; depends=[animation]; }; chromConverter = derive2 { name="chromConverter"; version="0.2.1"; sha256="0mpakgcqmpw0s7vcndqfmd2n2imn35nh5nkps07aj0vgd7z9ib8w"; depends=[magrittr purrr readr readxl reticulate stringr tidyr xml2]; }; - chromer = derive2 { name="chromer"; version="0.6"; sha256="1jn5dwl8i1di8hns3kjww6sqyba768j1302w3f43v9965vfr1xnp"; depends=[dplyr httr tibble]; }; + chromer = derive2 { name="chromer"; version="0.8"; sha256="0x9xhih0a19mqwiqs7bljcdgki874ii653v91frkwsr2y2yd9j7c"; depends=[dplyr httr tibble]; }; chromoMap = derive2 { name="chromoMap"; version="4.1.1"; sha256="1067h5d6jdbm811n7ayikhqfbcqmxbz5jgp05vf1sbln7qgn9l43"; depends=[htmltools htmlwidgets]; }; chromote = derive2 { name="chromote"; version="0.2.0"; sha256="0x888796760gglxqzd0i5mqim3j878dkyip64m26irprl9ksyxm3"; depends=[curl fastmap jsonlite later magrittr processx promises R6 rlang websocket]; }; chromseq = derive2 { name="chromseq"; version="0.1.3"; sha256="0m9dnm50iw176ffn6syd3538hxmjhkrxfzaf13210q100wk0lgz2"; depends=[]; }; @@ -7759,6 +7905,7 @@ in with self; { citationchaser = derive2 { name="citationchaser"; version="0.0.4"; sha256="11ilh8fpqvljzriwwkzmw5idxff82spyv4b36lsl1s0lfbgjis69"; depends=[data_table dplyr httr jsonlite maditr MESS networkD3 scales tibble]; }; citecorp = derive2 { name="citecorp"; version="0.3.0"; sha256="0lqxa6qfysrk3rpg9fnsxhrfsd0qsbfxhc3b43090fhlxq9gk3wm"; depends=[crul data_table fauxpas jsonlite]; }; cities = derive2 { name="cities"; version="0.1.3"; sha256="1047y1n8mldbnq8g7p43bcvsxz2hbcidbwvafcj1h01rsfgbfkd1"; depends=[dplyr ggplot2 ggthemes plotly tidyr]; }; + citmre = derive2 { name="citmre"; version="0.1.0"; sha256="08n8ldfdnpizk55j9iba65b6dkqxlqmsvfgvmn7cnrzgb4achcxd"; depends=[dplyr httr jsonlite lubridate plotly rvest xml2 xts]; }; cito = derive2 { name="cito"; version="1.1"; sha256="0ayzwk684a0clq67h6ycifphcrhshdx5kpww9yi0v627pyx3jfv6"; depends=[abind checkmate cli coro gridExtra lme4 parabar progress tibble torch torchvision]; }; citrus = derive2 { name="citrus"; version="1.0.2"; sha256="1pzzyppqfh3qvc1xi2947lnshv7z2c21r8fribhc1avj76j26q5y"; depends=[clustMixType dplyr GGally ggplot2 RColorBrewer rlang rpart rpart_plot stringr tibble treeClust]; }; ciu = derive2 { name="ciu"; version="0.6.0"; sha256="0pqs8ivbybbrjar978bl05awgaks33nqfm7l9z68iv2sj4a9hv21"; depends=[crayon ggplot2 Rcpp]; }; @@ -7775,7 +7922,8 @@ in with self; { clam = derive2 { name="clam"; version="2.5.0"; sha256="16yq457a2c8d47szimad7rx0q31h0g7iirmb75xxjicvkxqprmaz"; depends=[rintcal]; }; clarabel = derive2 { name="clarabel"; version="0.5.1"; sha256="12kds0pwvs2wrv23pjs6bbh49gymak7as46qjz65is4ssd12fbs8"; depends=[]; }; clarifai = derive2 { name="clarifai"; version="0.4.2"; sha256="0igi4xl27nz0r85hpws2zfc2gn5z2nmywp3saxgp74mh2y99lg6s"; depends=[curl jsonlite]; }; - clarify = derive2 { name="clarify"; version="0.2.0"; sha256="1iyjs0wai41x6w0kv7szr7x5gfs05k2kya7bw4n37g0i8s829isq"; depends=[chk ggplot2 insight marginaleffects mvnfast pbapply rlang]; }; + clarify = derive2 { name="clarify"; version="0.2.1"; sha256="0cda1xvcfd0lz3802h945jw98ala68z89vfgdixv4z6yn9fqzzcq"; depends=[chk ggplot2 insight marginaleffects mvnfast pbapply rlang]; }; + clarkeTest = derive2 { name="clarkeTest"; version="0.2.0"; sha256="0p2lhpdic6rlx6qrb0kkc94anr1pbpvdznykli6ggsd4p5amqbpl"; depends=[]; }; class = derive2 { name="class"; version="7.3-22"; sha256="0p6i10jk8mb85bkx4lvixw85lsmgnk4cizcdw33zqhrqx5j436dn"; depends=[MASS]; }; classGraph = derive2 { name="classGraph"; version="0.7-6"; sha256="10nyrs5xh70ajhi1q6pvx4s5lkl2r46ddxanhiyn9vv9swr2hzsw"; depends=[graph Rgraphviz]; }; classInt = derive2 { name="classInt"; version="0.4-10"; sha256="12rbwh7g0a6abvy423xjiv53gx1f9lg4y78r80lc0fj9pjpiwmn3"; depends=[class e1071 KernSmooth]; }; @@ -7787,7 +7935,7 @@ in with self; { clda = derive2 { name="clda"; version="0.1"; sha256="03zfanvpz1h42h2z38a63fck1p5hqig4w2svknzpw7mryji5q9b1"; depends=[MASS]; }; cleaR = derive2 { name="cleaR"; version="0.0.4"; sha256="1vvmaaqqrd65l9hm3yjf88ajmlaf1sl7iy816ypjy9ww9x7dcyf4"; depends=[]; }; clean = derive2 { name="clean"; version="2.0.0"; sha256="0zvk3a5yz54g2mn7y1d91z6ljglbyq1hkh4iip1dfyi15chrqv7y"; depends=[cleaner]; }; - cleanNLP = derive2 { name="cleanNLP"; version="3.0.7"; sha256="0zkfc7m7afmljr5rflx9mfplfamv6c30qaw0ckalj14s9xdrxa44"; depends=[Matrix reticulate stringi udpipe]; }; + cleanNLP = derive2 { name="cleanNLP"; version="3.1.0"; sha256="0qddi649ifgwlgbv7jh0im00dhhs740sgpkid39j01kdsv9czlil"; depends=[Matrix reticulate stringi udpipe]; }; cleanTS = derive2 { name="cleanTS"; version="0.1.2"; sha256="04k84989a0jvdd015yrd6wqnfk19yq0a4qpdnm3l0137h7s2xq8k"; depends=[data_table gganimate ggplot2 ggtext glue imputeTestbench imputeTS lubridate shiny stringr tibble transformr]; }; cleancall = derive2 { name="cleancall"; version="0.1.3"; sha256="079l5knm3lrvnfbwcvg2g62sqbg7iira5x0gxd4fk1pysnm5hwmf"; depends=[]; }; cleandata = derive2 { name="cleandata"; version="0.3.0"; sha256="1lm7k25j16p888xvd7rzzd3sb3namzjlpjn22xmmpzlzyl0h7dhk"; depends=[]; }; @@ -7799,8 +7947,9 @@ in with self; { clevr = derive2 { name="clevr"; version="0.1.2"; sha256="0r47mq0k55v3jvkzv1nlajqmcj03gq0igrxlcwhfrhbam9vwvapx"; depends=[BH Matrix Rcpp]; }; clhs = derive2 { name="clhs"; version="0.9.0"; sha256="04hd0p51j15294fv1a9qx61p5yfmh8hcx784v3x1s0kx7km34saz"; depends=[cluster ggplot2 plyr raster Rcpp RcppArmadillo reshape2 sf sp]; }; cli = derive2 { name="cli"; version="3.6.2"; sha256="0lg131q9l8wpnggc3jlrjl1ri3dw0d1pi4nr1zlnlaqvf7ilj1sc"; depends=[]; }; - cliapp = derive2 { name="cliapp"; version="0.1.1"; sha256="0v62lbcsja0xmlpqcps370n5c7bk4j2n8pwh9xyif5s4wpf82qz1"; depends=[cli crayon fansi glue prettycode progress R6 selectr withr xml2]; }; + cliapp = derive2 { name="cliapp"; version="0.1.2"; sha256="0yaahalirm89s5snhqpz11s36fp5ri5af9w6ljqlvfd94y6ckvfb"; depends=[cli crayon fansi glue prettycode progress R6 selectr withr xml2]; }; clickR = derive2 { name="clickR"; version="0.9.39"; sha256="0kqv3kwj1dbq6d7010gdy003v11ww0bx2zr7yv93ag060viv956d"; depends=[beeswarm future future_apply stringdist]; }; + clickableImageMap = derive2 { name="clickableImageMap"; version="1.0"; sha256="0p1wjar63y9qzss5i4pdfilkxaci0gi30vhw550db52pgcx21ywk"; depends=[ggplot2 ggplotify gridExtra gtable]; }; clickb = derive2 { name="clickb"; version="0.1"; sha256="0cbhwvxb7xa34wf10saq65wiwlmw1cgnbiqgv6mfyd8dcdv25rwg"; depends=[DiscreteWeibull mclust MCMCpack]; }; clickstream = derive2 { name="clickstream"; version="1.3.3"; sha256="1pbw74kd1ig6xc9llv8idizx0rya2454kpd9z62ybwvy68vyargs"; depends=[arules ClickClust data_table ggplot2 igraph linprog MASS plyr reshape2 Rsolnp]; }; clidamonger = derive2 { name="clidamonger"; version="1.1.0"; sha256="1kpfldyadrk7ayg9kjbs1kswdvzsy3qb5qr5mqrprx7mm8plsz6s"; depends=[]; }; @@ -7814,14 +7963,13 @@ in with self; { climatol = derive2 { name="climatol"; version="4.1.0"; sha256="10znkynipb852y0j4kb16bhm4lcxdn5wy7vfx9ibcdwr06pv6kg7"; depends=[]; }; climatrends = derive2 { name="climatrends"; version="0.5"; sha256="0b2afsff0yl2rcvff5mi6zz5xls9k9hzpay041mv11wc7ii8bw27"; depends=[nasapower]; }; clime = derive2 { name="clime"; version="0.5.0"; sha256="15xc4cvllf6qpwa8a0lvsbivx4cricbgn0v3wc70xy69ngfa7zaj"; depends=[lpSolve]; }; - climenv = derive2 { name="climenv"; version="1.0.0"; sha256="0w1pz725b6sw854pinypgi57vb2xjis3xx53b4mggwpdghck6mk7"; depends=[climaemet dismo dplyr elevatr exactextractr geodata glue plyr randomForest sf sp Ternary terra]; }; - climetrics = derive2 { name="climetrics"; version="1.0-12"; sha256="0mvs1k0fld1rrqnvjjdnhz9m1dgp8j636ij8wwnb12pz8fp6gvg1"; depends=[raster rts terra xts yaImpute zoo]; }; + climetrics = derive2 { name="climetrics"; version="1.0-15"; sha256="0xgc0lklx2ry60gp38nbl922xhdyfvia3mg977y4gdhcz1jljfhp"; depends=[raster rts terra xts yaImpute zoo]; }; climextRemes = derive2 { name="climextRemes"; version="0.3.1"; sha256="0dvkwdb37aqvl9qanaw4b7in6b4vjih3xjy0j16qdr5w76jcn804"; depends=[boot extRemes]; }; climwin = derive2 { name="climwin"; version="1.2.3"; sha256="1r2x5941k8l9z3517389y120sfhrskdpchc0pkibznza8aa95r85"; depends=[evd ggplot2 gridExtra lme4 lubridate Matrix MuMIn nlme numDeriv RcppRoll reshape]; }; clinDR = derive2 { name="clinDR"; version="2.4.1"; sha256="06q8ajfa0gj8ddr6vb456vra4id7la50aidx3j2bnyaysbavd108"; depends=[doParallel DoseFinding dplyr foreach ggplot2 glue mvtnorm purrr rstan shiny tibble tidyr waiter]; }; - clinDataReview = derive2 { name="clinDataReview"; version="1.5.0"; sha256="17ffdz410fniiybzw8rka0rgv8jqqsmsmp3b9yzlpsjcpx0z55s9"; depends=[bookdown clinUtils crosstalk data_table ggplot2 haven htmltools htmlwidgets jsonlite jsonvalidate knitr plotly plyr rmarkdown stringr xfun xml2 yaml]; }; + clinDataReview = derive2 { name="clinDataReview"; version="1.6.0"; sha256="1xfv7r7rbr8fjkhrwxbpnvbf4khwcvd5pyam9fbbp6b65zr752c2"; depends=[base64enc bookdown clinUtils crosstalk data_table ggplot2 haven htmltools htmlwidgets jsonlite jsonvalidate knitr plotly plyr rmarkdown stringr xfun xml2 yaml]; }; clinPK = derive2 { name="clinPK"; version="0.13.0"; sha256="1mfm4z0gbwmk2pvwmrk2z00zjl580mbf3z38zpsb3nx8xlxvsv1b"; depends=[]; }; - clinUtils = derive2 { name="clinUtils"; version="0.1.4"; sha256="0iiw7786i9a878rx0ld9q7rk9szx46hdl9rg2p3032l8ksvryqm2"; depends=[crosstalk data_table DT haven htmlwidgets knitr plyr viridisLite]; }; + clinUtils = derive2 { name="clinUtils"; version="0.2.0"; sha256="1i8bbfj9hbhjq7ppr3s3wxmnlis0j9xapdz88x44gcsmvxmr57dr"; depends=[crosstalk data_table DT haven htmlwidgets knitr plyr viridisLite]; }; clinfun = derive2 { name="clinfun"; version="1.1.5"; sha256="0dsbgj29s7c9pv6p2j3nvksnckym0gyb8hwqvks53mvy2pg9j1ni"; depends=[mvtnorm]; }; clinicalsignificance = derive2 { name="clinicalsignificance"; version="2.0.0"; sha256="132zwgzrc9gf10x2ldr7mjbj8k83h87y7py9b34yv9s7jmciy62x"; depends=[BayesFactor bayestestR cli dplyr ggplot2 insight lme4 purrr rlang tibble tidyr]; }; clinmon = derive2 { name="clinmon"; version="0.6.0"; sha256="0cd5mrirfll0zbm9k8glwdqnh4qy4dlfnsypr3xhyf6ppgm35hlv"; depends=[signal]; }; @@ -7832,25 +7980,24 @@ in with self; { clipp = derive2 { name="clipp"; version="1.1.1"; sha256="1yddihmjg90j9id825lyanqpfm4i67mdgvdm53pz20p8fcq4mlzw"; depends=[]; }; clipr = derive2 { name="clipr"; version="0.8.0"; sha256="1s9vvv3cxnz8w11gsi8z9ddv9jzib5qf5qqxnwqrrv7vj8cr7hij"; depends=[]; }; clisymbols = derive2 { name="clisymbols"; version="1.2.0"; sha256="1q7gi2zmykhzas9v8fdnbpdq7pzdcpbhim1yxvd2062l777g4j86"; depends=[]; }; - clmplus = derive2 { name="clmplus"; version="0.1.0"; sha256="0flnrfs5ymz0ki85zcwmdg605xyfpdc73c71xk35q0ak7l7mbz44"; depends=[ChainLadder forecast ggplot2 gridExtra reshape2 StMoMo]; }; + clmplus = derive2 { name="clmplus"; version="1.0.0"; sha256="024w8a4qj9sr0vqpfv5sm5gmcy4crin90sfx0z1y13iiznk7kvch"; depends=[ChainLadder forecast ggplot2 gridExtra reshape2 StMoMo]; }; clock = derive2 { name="clock"; version="0.7.0"; sha256="0x58xhngpd2rj7da9gr1x1zwz4rliza7aakfadkqsc4c7wxpmral"; depends=[cli cpp11 lifecycle rlang tzdb vctrs]; }; - clockify = derive2 { name="clockify"; version="0.1.4"; sha256="1x0d2np48lgkvsh4bw6szkahnmmy5rcipxnf2wnyhczvgplncw2f"; depends=[anytime dplyr httr janitor logger lubridate purrr rlist stringi tibble tidyr]; }; + clockify = derive2 { name="clockify"; version="0.1.6"; sha256="0yancrksqpsjgrf5rhq25yl4hnc4vjq57bv5kqqpd0h1fw3xxr37"; depends=[anytime dplyr httr janitor logger lubridate purrr rlist stringi tibble tidyr]; }; clogitL1 = derive2 { name="clogitL1"; version="1.5"; sha256="0y6a6s5l98i0vrj66biwr17g6pzpmm5kfz4c57af0yhv7c4s4was"; depends=[Rcpp]; }; clogitLasso = derive2 { name="clogitLasso"; version="1.1"; sha256="1j2kscd6d1jham6yqx5rp78x5vfj2faylkxkbcjaqbynlnqbbxd0"; depends=[foreach lassoshooting]; }; clogitboost = derive2 { name="clogitboost"; version="1.1"; sha256="19wcb7229amlxn6xahxj6pf9rwfm02s7qkxz2yvyhnq95y0clxkm"; depends=[Rcpp]; }; cloneRate = derive2 { name="cloneRate"; version="0.2.3"; sha256="0ii1jbwk60dvqqrxr4z06xnajyf73ywhb06i42szcs6mjm1jxwsa"; depends=[ape BH Rcpp RcppEigen RcppParallel Rmpfr rstan rstantools StanHeaders]; }; clordr = derive2 { name="clordr"; version="1.7.0"; sha256="0lrws22aijsfdr595g2dfxsvnvbq6bs18glbdc07qkb27kcpvv1p"; depends=[doParallel foreach MASS pbivnorm rootSolve tmvmixnorm]; }; cloudUtil = derive2 { name="cloudUtil"; version="0.1.12"; sha256="18g946j00anlk20d0fh01w0xyj1kwyy7jhlgz5a85wmp6s2gkz74"; depends=[]; }; - cloudfs = derive2 { name="cloudfs"; version="0.1.2"; sha256="1zl7l7q35hzayf2lc0nh5zcb377q9cvhvxzz53ydv7xza6qy9g7s"; depends=[aws_s3 cli desc dplyr glue googledrive httr rlang]; }; + cloudfs = derive2 { name="cloudfs"; version="0.1.3"; sha256="0qrx46q2vryfq88w6b8s1wzck4kx0hln41l98q65la1wnfn1ck0q"; depends=[aws_s3 cli desc dplyr glue googledrive httr rlang]; }; cloudml = derive2 { name="cloudml"; version="0.6.1"; sha256="1j15q9yb2rc4fbjxfh21fiq6is8dnb8nfyi7g8iazgfwb3p9ahpx"; depends=[config jsonlite packrat processx rprojroot rstudioapi tfruns withr yaml]; }; cloudos = derive2 { name="cloudos"; version="0.4.0"; sha256="0d6lg7y58w62ikwm83xvc8wky396y4xs5cx3cfn1wxnsnrs462d1"; depends=[dplyr ggplot2 httr jsonlite rappdirs tibble tidyr]; }; cloudstoR = derive2 { name="cloudstoR"; version="0.2.0"; sha256="0x9pl9x5sjs5vwcz5i1r5ymyv3rlv9adjc5y9kvxljdxgvnv6i08"; depends=[cli curl getPass httr keyring rio XML]; }; - clpm = derive2 { name="clpm"; version="1.0"; sha256="1dj9jx7r5d2azxkggkkqyhci7v80gl24qchw0x8xh84krl4cz2pz"; depends=[]; }; clptheory = derive2 { name="clptheory"; version="0.1.0"; sha256="1ix3yh4w97llx8dw2pp1gpwgrfag2zr4wb2hp3z3j3ggs587yic4"; depends=[car dplyr magrittr popdemo]; }; clr = derive2 { name="clr"; version="0.1.2"; sha256="088ks9lrhlyvg3yvlfmb0091yp6qp5bzg9h5r6ryv3bk6y56sajx"; depends=[dplyr lubridate magrittr]; }; clttools = derive2 { name="clttools"; version="1.3"; sha256="0va9k1b4xsb2sgpxzvid6sa8m6b8i3r4kgghclmb78nnrs480cwi"; depends=[]; }; clubSandwich = derive2 { name="clubSandwich"; version="0.5.10"; sha256="0qx4qq0k01q06hrs348n417pf338dyfbcy2vsi0y3ap6y1rb7w6s"; depends=[sandwich]; }; - clubpro = derive2 { name="clubpro"; version="0.6.0"; sha256="0yxqs6idgzc00mnmr04z2h915qx3jmz1fp03lz0bzjawv6yda2v1"; depends=[lattice Rcpp RcppArmadillo RcppProgress]; }; + clubpro = derive2 { name="clubpro"; version="0.6.2"; sha256="0p407zd2gr4yxxpa97c37yxrvdkid00qf1ird58yl44wrwszh90w"; depends=[lattice Rcpp RcppArmadillo RcppProgress]; }; clue = derive2 { name="clue"; version="0.3-65"; sha256="1y1ycb5yw034ccxz15x41ah699hgjffsfvbn15fwdcdjbz9zvy5x"; depends=[cluster]; }; clugenr = derive2 { name="clugenr"; version="1.0.3"; sha256="0wqhqy6ivhz0nhl0gr5gcxqdvi5ha4mhqgvgjmgaqibpi03dy3l8"; depends=[mathjaxr]; }; clusEvol = derive2 { name="clusEvol"; version="1.0.0"; sha256="192zi43flpwfazgjd5ci0620hbad77z6s527vp6qwywcly3aqxmw"; depends=[cluster clusterSim dplyr fpc ggplot2 plotly viridis]; }; @@ -7859,7 +8006,6 @@ in with self; { clusrank = derive2 { name="clusrank"; version="1.0-4"; sha256="194h15ggymnzm70wm5w6xwjdjl0d7k2hnr5b93zhhncy3jrd590g"; depends=[MASS Rcpp]; }; clust_bin_pair = derive2 { name="clust.bin.pair"; version="0.1.2"; sha256="11lqd3vmx4kg08n6iv9na8rra49dkldx4f8jyf43hppbjrbvfinm"; depends=[]; }; clustAnalytics = derive2 { name="clustAnalytics"; version="0.5.5"; sha256="063n6s1q2kc7a42fajd2z0rd0v6dxs443hv1vlaq6xhli8l8cylk"; depends=[aricode boot dplyr fossil igraph mcclust mclust Rcpp Rdpack truncnorm]; }; - clustDRM = derive2 { name="clustDRM"; version="0.1-0"; sha256="1c5z08a15scp3nrwyh0c03pdaawvm3ivbygqpbglwxim7zf73rd2"; depends=[caret doParallel DoseFinding DT foreach IsoGene MCPMod multcomp ORCME ORIClust pheatmap RColorBrewer readr shiny]; }; clustEff = derive2 { name="clustEff"; version="0.3.1"; sha256="1zgj7nq0rba51xkm88vj9w70glk8z8g3y1awlfv38kf37s2yrs5c"; depends=[cluster fda ggplot2 ggpubr qrcm]; }; clustMD = derive2 { name="clustMD"; version="1.2.1"; sha256="0w4s9dab2mm5x0xibyl6s101c64if945a2cmwin9psd95p76mcny"; depends=[ggplot2 MASS mclust msm mvtnorm reshape2 truncnorm viridis]; }; clustMixType = derive2 { name="clustMixType"; version="0.3-14"; sha256="0i3wlnwa075rlwgv5b2kzgnswv6r7hha7biq84jqsa61hhysjxxw"; depends=[combinat dplyr RColorBrewer rlang tibble]; }; @@ -7870,7 +8016,7 @@ in with self; { clusterCrit = derive2 { name="clusterCrit"; version="1.3.0"; sha256="0raxlyvr3kr8c8bzjgs7hb9n76m314vzvfiz7c74v6cqpkmh6dkx"; depends=[]; }; clusterGeneration = derive2 { name="clusterGeneration"; version="1.3.8"; sha256="0w1sywv9cgl78wrsamh1zrig67r3grnyl27f036ipd1ab1b2510g"; depends=[MASS]; }; clusterHD = derive2 { name="clusterHD"; version="1.0.2"; sha256="16mk0bgvahxpjfawxkpjlfh9j1n5dldl6lhi7d1ssf5zaha35jkm"; depends=[Ckmeans_1d_dp cluster mclust Rcpp RcppArmadillo]; }; - clusterMI = derive2 { name="clusterMI"; version="1.0.0"; sha256="0w0mja9dybcf04x1q6d6qpb1jli247pqamcl1fcwlgnkmhl542c2"; depends=[cat cluster ClusterR diceR e1071 FactoMineR fpc glmnet knockoff lattice mclust mice micemd mix NPBayesImputeCat Rcpp RcppArmadillo reshape2 Rfast usedist withr]; }; + clusterMI = derive2 { name="clusterMI"; version="1.1.1"; sha256="0zrwan1myq2lw15ga0xfxkwszq09bp25qj8dn9z9zrmb9s3lfsj7"; depends=[cat cluster ClusterR diceR e1071 FactoMineR fpc glmnet knockoff lattice mclust mice micemd mix NPBayesImputeCat Rcpp RcppArmadillo reshape2 Rfast usedist withr]; }; clusterRepro = derive2 { name="clusterRepro"; version="0.9"; sha256="0s7qqvaf5yxxwhw6qyzfmk65c49yz405gljarwav6aglkx9883cl"; depends=[]; }; clusterSEs = derive2 { name="clusterSEs"; version="2.6.5"; sha256="0d8b79mg0wxfpmx3xq22p9apa2cs2ylbml7lf37w386s6kdgz7ns"; depends=[AER dfidx Formula lmtest mlogit plm sandwich]; }; clusterSim = derive2 { name="clusterSim"; version="0.51-3"; sha256="0wlsr9700f3j9wcjzpiaqwj09i5v8n9bvwxvj4vmq1sqvz97v681"; depends=[ade4 cluster e1071 MASS R2HTML]; }; @@ -7893,7 +8039,7 @@ in with self; { cmaRs = derive2 { name="cmaRs"; version="0.1.3"; sha256="028z0x6a6aq3n0kplqg4pwqa7xilpi4s919xrqvd2lqnabhbjy8l"; depends=[AUC earth Matrix MPV Rmosek ROCR Ryacas0 stringr]; }; cmaes = derive2 { name="cmaes"; version="1.0-12"; sha256="0wk8zkf585ipnxajmibip85cyz7wc5br0cph3cvnacbh7yf2zvay"; depends=[]; }; cmaesr = derive2 { name="cmaesr"; version="1.0.3"; sha256="03zx2nrw24wmmjjpyh8pswasjjq0amf0g375fm2b3s111dx8fbj9"; depends=[BBmisc checkmate ggplot2 ParamHelpers smoof]; }; - cmahalanobis = derive2 { name="cmahalanobis"; version="0.1.0"; sha256="0iry0jifvvlam7szhsmrsz2mqim0pmkfk50n97c1q9r84n6rfxlj"; depends=[]; }; + cmahalanobis = derive2 { name="cmahalanobis"; version="0.3.0"; sha256="1ap8gs9dfkyk5nrq21r2a4h2y040i91n1i20sb4wwhx4n377kh0d"; depends=[ggplot2 reshape2]; }; cmbClust = derive2 { name="cmbClust"; version="0.0.1"; sha256="01yjiscnligy6wpn752sqm53xhx0qxjbfd4dc8p7c31kbzfpif2x"; depends=[]; }; cmcR = derive2 { name="cmcR"; version="0.1.11"; sha256="15d85mjy6y68jysji0910kg9vp69iz4pbb2l4vmn501xq4md3kx3"; depends=[dplyr ggnewscale ggplot2 ggplotify imager magrittr patchwork purrr quantreg rlang scales stringr tibble tidyr x3ptools zoo]; }; cmce = derive2 { name="cmce"; version="0.1.0"; sha256="0d52ci906zbd4q43qylcyw93acxh7f20jn3r0k74ynyy47131dnd"; depends=[]; }; @@ -7906,30 +8052,31 @@ in with self; { cmmr = derive2 { name="cmmr"; version="0.1.2"; sha256="0nik1pzd1rckalvn7xh6s699kkdjnra3q3bn5x16c1lmpz5bp2s4"; depends=[httr progress RJSONIO]; }; cmna = derive2 { name="cmna"; version="1.0.5"; sha256="161qc7q88ajm3l62bq03lpf35bdii1w1d111085zvs3hrf09iybw"; depends=[]; }; cmocean = derive2 { name="cmocean"; version="0.3-1"; sha256="0y6yd3x2swx88r7kv6f9lrbf3zzawhf2x8izszgg4zb21pkal6k8"; depends=[]; }; - cmprsk = derive2 { name="cmprsk"; version="2.2-11"; sha256="050f24l5ab1ds9824c7yjahimf6pg8ih2k83jzpzfb0n5k5jfh44"; depends=[survival]; }; + cmprsk = derive2 { name="cmprsk"; version="2.2-12"; sha256="1p5c0i8prz88pgzb5dwpajlrxa0d72019sp9vysppb0fps9wngkp"; depends=[survival]; }; cmprskQR = derive2 { name="cmprskQR"; version="0.9.2"; sha256="1b3di5fsgglriv00fxydpc4p8lh0xcgi6jc04awq2vmp6s8kvjmw"; depends=[quantreg survival]; }; cmprskcoxmsm = derive2 { name="cmprskcoxmsm"; version="0.2.1"; sha256="1q17nzvqv0c8p2fs34fqszllp6g7kdbsmw4frlxpbjr3gwgd8rlk"; depends=[ggplot2 sandwich survival twang]; }; cmpsR = derive2 { name="cmpsR"; version="0.1.2"; sha256="1qkdv86v0pk9knl97lfz28w8vgn71j7fv9aw8afq8qflfgvda284"; depends=[assertthat dplyr ggplot2 rlang]; }; cmrutils = derive2 { name="cmrutils"; version="1.3.1"; sha256="0nrq84bkd23lvvg8ls2smkjcnfnydhbcni3n6s8w0579i9xga8dv"; depends=[chron]; }; cms = derive2 { name="cms"; version="0.1.0"; sha256="0m3cxvw40nyr1jpdkhg5nbms16hkzj0mrx5nl39x1l42cx2hcjrl"; depends=[assertthat dplyr magrittr readr rlang rvest xml2]; }; - cmsaf = derive2 { name="cmsaf"; version="3.5.0"; sha256="0a7ld5651ad3073hp2pyisbygxnd5lak11rinzgqrb5szlzih89q"; depends=[cmsafops cmsafvis colorspace colourpicker data_table FNN maps ncdf4 R_utils raster SearchTrees shiny shinyFiles shinyjs shinythemes shinyWidgets xml2]; }; - cmsafops = derive2 { name="cmsafops"; version="1.3.0"; sha256="0lyjyd78d0qprx8vjxpny2jl14cgy2xy47ydsv5awgg7bb4w34pg"; depends=[assertthat fields FNN ncdf4 progress rainfarmr raster SearchTrees trend]; }; - cmsafvis = derive2 { name="cmsafvis"; version="1.2.3"; sha256="0vqk5pbz9bhq7ddzrdibp03ddi5mqblqig014z2zsdnr4qswckc9"; depends=[assertthat cmsafops colorspace countrycode fields gridExtra mapproj maps ncdf4 png progress raster rasterVis RColorBrewer sf terra]; }; + cmsaf = derive2 { name="cmsaf"; version="3.5.1"; sha256="1h4h30k72nclpi8siha050kp8i0va2r1kvwhh3nczb3lhx11zmwl"; depends=[cmsafops cmsafvis colorspace colourpicker data_table FNN maps ncdf4 R_utils raster SearchTrees shiny shinyFiles shinyjs shinythemes shinyWidgets xml2]; }; + cmsafops = derive2 { name="cmsafops"; version="1.4.0"; sha256="118msgfysvbg08nvzrx5nmffvszn1cfx91lzd2hkd6la8sivk10h"; depends=[assertthat fields FNN ncdf4 progress rainfarmr raster SearchTrees trend]; }; + cmsafvis = derive2 { name="cmsafvis"; version="1.2.7"; sha256="18mdzvm0sxsr9fqrpd65kld8mnpjlmi0z6mn6dfgdbbx0qs85rgl"; depends=[assertthat cmsafops colorspace countrycode fields gridExtra mapproj maps ncdf4 png progress raster rasterVis RColorBrewer sf terra]; }; cmstatr = derive2 { name="cmstatr"; version="0.9.3"; sha256="1hi3zyw73jxrl2spfbbfk5xnyg31jqlslz1342p5s45k4ydvqikm"; depends=[dplyr generics ggplot2 kSamples MASS purrr rlang tibble]; }; + cmstatrExt = derive2 { name="cmstatrExt"; version="0.4.0"; sha256="06py81q7viz2mh58qn16wvw9xw95vw06cg465qhdrh80j07mygzg"; depends=[dplyr generics Rcpp rlang testthat]; }; cmtest = derive2 { name="cmtest"; version="0.1-2"; sha256="1qff6vx0c9sw4xm7fwhck165snrahlmi91na64f7axad14qmp34d"; depends=[Rdpack]; }; cmvnorm = derive2 { name="cmvnorm"; version="1.0-7"; sha256="0zi4adh3gd8nbcnsn9fqiiqi5pc2jx782vw394gi988vyngqr7cq"; depends=[elliptic emulator]; }; - cna = derive2 { name="cna"; version="3.5.6"; sha256="1368152mlj2kv3py45bggm5dpi6hhi9rx5db7rfim6wy88qgqxz4"; depends=[car Matrix matrixStats Rcpp]; }; + cna = derive2 { name="cna"; version="3.6.0"; sha256="1g0h4c8xba7i0fv5azdhx0c403w9ccs3hyarsr2qxnw64f05yazh"; depends=[car Matrix matrixStats Rcpp]; }; cnaOpt = derive2 { name="cnaOpt"; version="0.5.2"; sha256="1ciqh0d88270hizlsks7d05kggaszzl6add2n143z7cswkgfvkyr"; depends=[cna dplyr ggplot2 matrixStats Rcpp]; }; cnbdistr = derive2 { name="cnbdistr"; version="1.0.1"; sha256="05qi41jimslbngjgbwzfda0q25hb28ax79v9yckvrbpgjc8dk990"; depends=[hypergeo]; }; cncaGUI = derive2 { name="cncaGUI"; version="1.1"; sha256="0wmapwfag2grshmdrpmlinzikrsprcc8a1afq4dfkwr54rb3m6ky"; depends=[MASS plotrix rgl shapes tcltk2 tkrplot]; }; + cnmap = derive2 { name="cnmap"; version="0.1.0"; sha256="17ksinswnj37sj1cdzpxg27rkn8qi4kli48hi1jk8r147d2rykdg"; depends=[sf terra]; }; cnum = derive2 { name="cnum"; version="0.1.3"; sha256="0iphbx5ii4ij0bi9nqdz793i4gk2164jlgz5xn8yzsayjmizhdk2"; depends=[BH Rcpp stringr]; }; coRanking = derive2 { name="coRanking"; version="0.2.4"; sha256="1c1b005q7dr4868wm6vcs3x0849vf8xj7aacxnyc9wzb4lgkd2lb"; depends=[]; }; coala = derive2 { name="coala"; version="0.7.2"; sha256="1y736gagr1nkyxvsgkn411si6xv6w4sp8m7p20za07y4m71z900i"; depends=[assertthat digest R6 Rcpp RcppArmadillo rehh scrm]; }; coalescentMCMC = derive2 { name="coalescentMCMC"; version="0.4-4"; sha256="09abhcp6y98378kf018inhxpkkirch5636nskywn0p6shp2q278x"; depends=[ape coda lattice Matrix phangorn]; }; - coalitions = derive2 { name="coalitions"; version="0.6.24"; sha256="1ya9g2i1ds2w4hxbacmql67a3hh1grycj74g6b7xb05h478ym87n"; depends=[checkmate dplyr ggplot2 gtools jsonlite lubridate magrittr purrr RCurl rlang rvest stringr tibble tidyr xml2]; }; coarseDataTools = derive2 { name="coarseDataTools"; version="0.6-6"; sha256="1g9hxyp2vdhq1zr18qlf2aqwp9d9hr07k6grmvblj2xrwlzfvc1p"; depends=[MCMCpack]; }; coat = derive2 { name="coat"; version="0.2.0"; sha256="01sfssvb20rnjx6vpgyglj96wysr9v00n7fa8mg9l65cgv32dvgc"; depends=[ggparty ggplot2 ggtext gridExtra partykit]; }; - cobalt = derive2 { name="cobalt"; version="4.5.4"; sha256="0nxxh31fznv4dn33psvshggyriq7l5i022706dz97vg12m8lblpx"; depends=[backports chk crayon ggplot2 gridExtra gtable rlang]; }; + cobalt = derive2 { name="cobalt"; version="4.5.5"; sha256="1h1fyv2x4wjvwqjxh0hdvh1y355jbkq7n8n6bbnkskd2w5b1jv07"; depends=[backports chk crayon ggplot2 gridExtra gtable rlang]; }; cobiclust = derive2 { name="cobiclust"; version="0.1.2"; sha256="04vwf3gawc02czqa3zk5lfklrqivsqlhbvfa2drsysbipy933zny"; depends=[assertthat cluster testthat]; }; cobs = derive2 { name="cobs"; version="1.3-8"; sha256="08cqpiylbfy5j5xxajpngqaycmmciwhyf3sk3972x2l6rg3lj81c"; depends=[quantreg SparseM]; }; coca = derive2 { name="coca"; version="1.1.0"; sha256="1lh7q3ip1jaz5zj5zcnd5whwpjw6zcrxs6j0j8mnmjsnw2kr4m5n"; depends=[caret cluster fpc glmnet Matrix nnet pheatmap RColorBrewer sparcl]; }; @@ -7954,9 +8101,10 @@ in with self; { codemeta = derive2 { name="codemeta"; version="0.1.1"; sha256="0pcip5ycgkva5pg20fcc3vsb09dv4j57yqvbf5x8bdsxa5vpg11a"; depends=[desc jsonlite]; }; codemetar = derive2 { name="codemetar"; version="0.3.5"; sha256="0py4qn9148xlc1ldlifpm7vd7l9dih4f7yiadvmz57b3y2vr0b02"; depends=[cli codemeta commonmark crul desc gert gh jsonlite magrittr memoise pingr purrr remotes sessioninfo urltools xml2]; }; codename = derive2 { name="codename"; version="0.5.0"; sha256="1466zby3yiggvqiwynyvirifi30y9lwms0a4mx73c8x9wfy36px0"; depends=[]; }; - codep = derive2 { name="codep"; version="0.9-1"; sha256="17jziwm56icswa4ngp51ah8w1ma7ij3cksbdaipk0ikqvb5kinkb"; depends=[]; }; + codep = derive2 { name="codep"; version="1.2-3"; sha256="05k7g9nji076zzzyzpp2klr89sllmwz043pcfyiddxifgr77glk3"; depends=[]; }; coder = derive2 { name="coder"; version="0.13.10"; sha256="11vdw6aa977y05vlvqcm636j2c2kgii3w8dv4f2wk9c6l8hjhbg4"; depends=[data_table decoder generics tibble]; }; - codetools = derive2 { name="codetools"; version="0.2-19"; sha256="1ardg28x2cvilkgsj6bdvvp5snsy3rj7jbz9bpcdlcvzr1kybdy4"; depends=[]; }; + codetools = derive2 { name="codetools"; version="0.2-20"; sha256="0qx8zrlickl45wzzbydsbx5f1vmzhn71x7amzpfj71qpxisz7riv"; depends=[]; }; + codewhere = derive2 { name="codewhere"; version="0.1.1"; sha256="19biqcmjjly29vh5zn0ak6gz40857xb799fz344xz1vxwv420mp2"; depends=[httr]; }; codexcopd = derive2 { name="codexcopd"; version="0.1.0"; sha256="0pkl29fybflnj42xj8agyw6s3xif9vr5690vlkv5n3dxs8ji582h"; depends=[]; }; codez = derive2 { name="codez"; version="1.0.0"; sha256="1a25k7y59fflzkk95s5b9hr0nw69lnw3vlwv7sy8zj0w0b1n08ic"; depends=[abind entropy fANCOVA fastDummies ggplot2 greybox imputeTS keras lubridate modeest moments narray philentropy purrr readr scales tensorflow tictoc]; }; codified = derive2 { name="codified"; version="0.3.0"; sha256="0a5k0zqw1dxa3v1hzh3s43zlpyzpgxnbq2rhz8kq0g8lxqlki3pc"; depends=[checkmate dplyr kableExtra knitr rlang tibble tidyr]; }; @@ -7970,7 +8118,9 @@ in with self; { cofad = derive2 { name="cofad"; version="0.1.1"; sha256="0c27wfdk98mq0531avlgfxf2wmxcjyg39pgl9i37im7ri2s7kpnr"; depends=[]; }; cofeatureR = derive2 { name="cofeatureR"; version="1.1.1"; sha256="1awfrlnbpw9ivfvaahznx6dx5jp8ln0154vh2pznp520q59h1mbs"; depends=[dplyr ggplot2 lazyeval tibble]; }; coffee = derive2 { name="coffee"; version="0.3.0"; sha256="0vq9mwlc014vfbwyn4id99gx2dm3hyazy0qas0bv30x4fk2z2822"; depends=[data_table rintcal]; }; + cofid = derive2 { name="cofid"; version="1.0.0"; sha256="0nmfs34339immz9vc79jvwvpx9fpp0qp4zvsm3i8c5v0la603xxz"; depends=[]; }; coga = derive2 { name="coga"; version="1.2.2"; sha256="0h4qps0k973ia2aw19smlh84p34nnwdrfgk9nm4pgcs3qx3pn102"; depends=[cubature Rcpp RcppGSL]; }; + coglasso = derive2 { name="coglasso"; version="1.0.2"; sha256="0z4qdncmznprv16973jlj29vxxlkaqy6ari65fswn6ics2sz3xrr"; depends=[Matrix Rcpp RcppEigen]; }; cogmapr = derive2 { name="cogmapr"; version="0.9.3"; sha256="0aqlk6248m3pad0fwarvxvxfn4qfazhdbdplg8haw3aj165szq43"; depends=[dplyr ggplot2 graph magrittr Rgraphviz tidyr]; }; cognitoR = derive2 { name="cognitoR"; version="1.0.5"; sha256="1ik2cdw1vigiplsrxy2mbv3l2w9wlzw6xkgrdm4l3pg9x6hhcx6s"; depends=[base64enc config dplyr httr jsonlite paws shiny shinyjs]; }; cohortBuilder = derive2 { name="cohortBuilder"; version="0.2.0"; sha256="117gdqga61h24xa1h534837pz34ym5hnfz6731rrm3lnlzd171w6"; depends=[dplyr formatR ggplot2 glue jsonlite magrittr purrr R6 rlang tibble tidyr]; }; @@ -7984,7 +8134,7 @@ in with self; { cold = derive2 { name="cold"; version="2.0-3"; sha256="1y2l1v7s1v3m4nhlnl72n075h53vm93vxmfn4b6269n690wl9s6d"; depends=[cubature MASS]; }; colf = derive2 { name="colf"; version="0.1.3"; sha256="1av82yrp6csw7700ymipd02j73cmzn0apv7ykachjw09nzk86kvj"; depends=[nlsr]; }; collUtils = derive2 { name="collUtils"; version="1.0.5"; sha256="0gbk3lrb2lwq2ixrpcngng6qz6axjb4iyqy5606x1zmjm71c060p"; depends=[Rcpp rJava]; }; - collapse = derive2 { name="collapse"; version="2.0.11"; sha256="0aaqzipgnln6mcwgahlnvg0dhq82xnzrfn95mv4ywgpczaicwg3s"; depends=[Rcpp]; }; + collapse = derive2 { name="collapse"; version="2.0.14"; sha256="0njmis9a0jc8xmdxgxhpydsj2ygb89hg402gpqaw1h5bcwwpf0m8"; depends=[Rcpp]; }; collapsibleTree = derive2 { name="collapsibleTree"; version="0.1.8"; sha256="1i5nmw5w7m8xdgxzim8z8n4w321f42isxbvvajl8ii59pg7drilq"; depends=[data_tree htmlwidgets]; }; collateral = derive2 { name="collateral"; version="0.5.2"; sha256="1wnzgpayjsqnqry0cdmkijyjkkjhbc8hxwlkx7aj9qwaiz7wiibr"; depends=[crayon pillar purrr]; }; collatz = derive2 { name="collatz"; version="1.0.0"; sha256="02dvivahpq3zyiyhx7w36bs3dw1p2r3g167sjf3k173q7rr77p0m"; depends=[gmp]; }; @@ -7992,9 +8142,10 @@ in with self; { collidr = derive2 { name="collidr"; version="0.1.3"; sha256="18ki8mwf5ihbgfbhdbbk9ljs44js3rqgl1g6g3ch6dynz61sr6hn"; depends=[dplyr jsonlite stringr]; }; collin = derive2 { name="collin"; version="0.0.4"; sha256="0dh3k9rh1ykrd5nvp5nh4q7zvv835hx8ydpyml88d90ksy8za90p"; depends=[dlnm MASS mgcv nlme VGAM]; }; collinear = derive2 { name="collinear"; version="1.1.1"; sha256="1vflihmpbqhfl9y8a2s5pnj4pjdj9m20mk80lm6lvff1pjwj2sbp"; depends=[dplyr]; }; - collpcm = derive2 { name="collpcm"; version="1.3"; sha256="1viljrak7mk9qpqn5by31hgmpjw8xm3yibl82pn623icxsh5z4ws"; depends=[gtools latentnet network]; }; + collpcm = derive2 { name="collpcm"; version="1.4"; sha256="170pi66zw3h0yz8d34bg9n4qxkdn941xxi818g0vnkilvqyhjnib"; depends=[gtools latentnet network]; }; colmozzie = derive2 { name="colmozzie"; version="1.1.1"; sha256="0sn7dqg7rnddnmdb10c6scws6kgi1lz4lw8nc698x63z431ah1p8"; depends=[]; }; coloc = derive2 { name="coloc"; version="5.2.3"; sha256="0l318ad8sn151fjibgfvy082ar29f8c6x3qlmmhal2fq2fbbv795"; depends=[data_table ggplot2 susieR viridis]; }; + colocPropTest = derive2 { name="colocPropTest"; version="0.9.1"; sha256="1nz5x1j2xagy6sx85m6cvzhvzj59byircl35ammj860vkp050rm9"; depends=[car coloc data_table magrittr]; }; colocalization = derive2 { name="colocalization"; version="1.0.2"; sha256="0jrrh9nxjl3261rp1fnjfnydpxwpi7v0d20kzd0xc6awf52gydbb"; depends=[ggplot2]; }; colocalized = derive2 { name="colocalized"; version="0.2.0"; sha256="1q98wfqk0p9p92jgjf8liamz6grzwy6h57k7681fm07wfnyr268g"; depends=[doParallel foreach purrr]; }; colocr = derive2 { name="colocr"; version="0.1.1"; sha256="0ijykza6fdmwbr5zbyfjf382anrxh0lb9hlallyawfi6z076fv7j"; depends=[imager magick magrittr scales shiny]; }; @@ -8008,7 +8159,7 @@ in with self; { colorednoise = derive2 { name="colorednoise"; version="1.1.2"; sha256="1wyqliwy64hxbhhij8m5f9s4ranjpqc3qzlkr9m37c9z70lgjril"; depends=[data_table purrr Rcpp RcppArmadillo]; }; colorfindr = derive2 { name="colorfindr"; version="0.1.4"; sha256="175h476dzq1f2x25vdd268xj4ja4lv8fhfj9vld85waqi0sq515g"; depends=[bmp dplyr jpeg magrittr pixmap plotly plotwidgets png purrr rsvg stringr tibble tiff treemap]; }; colorhcplot = derive2 { name="colorhcplot"; version="1.3.1"; sha256="009pyyb30kwshldd7v7zfy5rxys6i0dhlc5w8ail61acbg4rlrmz"; depends=[]; }; - colorist = derive2 { name="colorist"; version="0.1.2"; sha256="0vakfv8rq0l55qzb8cj78zbyvcrh9j7ixjap95d144g3b617h6x3"; depends=[colorspace ggplot2 magrittr raster scales tidyr]; }; + colorist = derive2 { name="colorist"; version="0.1.3"; sha256="0sv3gg1cqgvadb16f5v7fc002cq0sdk6g1409adymxlxrn2bn6rd"; depends=[colorspace ggplot2 magrittr raster rlang scales tidyr]; }; colorizer = derive2 { name="colorizer"; version="0.1.0"; sha256="1c0rgjxzjwkaxdnkmcgn9f0mmcxna724cq60q79hzjindbl4r6bk"; depends=[dplyr httr magick magrittr purrr stringr tibble]; }; colormap = derive2 { name="colormap"; version="0.1.4"; sha256="0032ji9n8pivl70jppq989fgg781wil8zag7pfl1hs9xrpin8asy"; depends=[ggplot2 stringr V8]; }; colorpatch = derive2 { name="colorpatch"; version="0.1.2"; sha256="18p9hgccp37pbdf437xffkv6z500896v08fsw2jm8zcl9ladygaf"; depends=[colorspace ggplot2 gridExtra TSP]; }; @@ -8016,7 +8167,7 @@ in with self; { colorr = derive2 { name="colorr"; version="1.0.0"; sha256="1wwrgb9fc9gzxxwxrdrkwwrmhqqllv29wr4q8y1shj9d3nzcpwmh"; depends=[]; }; colors3d = derive2 { name="colors3d"; version="1.0.1"; sha256="0d78y5v329fhaqhw0a0cgkpiajmqb91vl9809fiwnvl2b4x3j51r"; depends=[combinat FNN plyr scales]; }; colorsGen = derive2 { name="colorsGen"; version="1.0.0"; sha256="0w4qkl4fw7pjfcd2z3nhpkxh8kv3bbq19bi2cg0ivfr83kxa44fj"; depends=[colorspace]; }; - colorscience = derive2 { name="colorscience"; version="1.0.8"; sha256="11fy8545g93b8dn2imihsb031lnf5g5z17km8q07q4y6g96xdbdv"; depends=[Hmisc pracma sp]; }; + colorscience = derive2 { name="colorscience"; version="1.0.9"; sha256="1m96av3dax3nh7ckd83hrzklxccq878gn808jmkwqzkvnx3y5i13"; depends=[Hmisc pracma sp]; }; colorspace = derive2 { name="colorspace"; version="2.1-0"; sha256="0k31hazd2rq5lyg3y89y2v5jqadz2qlxd1bhvj89q4aldfxql1q4"; depends=[]; }; colouR = derive2 { name="colouR"; version="0.1.1"; sha256="0dchwa6nqikdm7chzavimc5cayhrbrl0hzr8xg8y15nvb8b2vqj6"; depends=[dplyr ggplot2 httr jpeg pixmap png]; }; colourlovers = derive2 { name="colourlovers"; version="0.3.6"; sha256="13fqn6hbqjk3d8krpqb3hmsq06qrbks8a9ia5441hd6m7m8wjjkc"; depends=[httr jsonlite png XML]; }; @@ -8042,11 +8193,12 @@ in with self; { cometr = derive2 { name="cometr"; version="0.4.0"; sha256="022fz7b94xl56ss1773n3g9zwfjm8mqfqds68ngvfq5498npd9z5"; depends=[callr digest httr jsonlite R_utils R6 yaml]; }; comets = derive2 { name="comets"; version="0.0-1"; sha256="1qxy0cdp8cjkwlgii00lq5qzcimlrb8fqlg2xrw8rn6ik1nrmhs0"; depends=[Formula glmnet ranger]; }; comf = derive2 { name="comf"; version="0.1.12"; sha256="1239lj29y2hiqgsf507i535d8adgsmzh2a1b1h896cxlbvpjn3ls"; depends=[jsonlite plyr reshape]; }; - commafree = derive2 { name="commafree"; version="0.1.0"; sha256="0dn6ps6nvinwaxc8js5bq2kg78nzrf7ijbi77c7jan8z50d19m0p"; depends=[]; }; - common = derive2 { name="common"; version="1.1.2"; sha256="1wg0flsjp4499hmrgfbp9a9j1bib8vi9k4vnjx3l43cw3rqzs70b"; depends=[]; }; + commafree = derive2 { name="commafree"; version="0.2.0"; sha256="0slxxq4jw2abfvg725x1hd7jmrsdc6ckbgzjzin081ll29axrfxg"; depends=[]; }; + common = derive2 { name="common"; version="1.1.3"; sha256="1zl34ikbasph6dchvl2dcbrs5wj6jxlyfg8gfnbq7dcmmbjg9l2h"; depends=[]; }; commonmark = derive2 { name="commonmark"; version="1.9.1"; sha256="0fxm1nn4al0yn79iqix9cp5j5chr8jq56d29ayqrpag49hzs25wm"; depends=[]; }; commonsMath = derive2 { name="commonsMath"; version="1.2.8"; sha256="0qbb7c5xqffq17i636qf9ppanxlmph9wym9bz6n4dhscfniw14q8"; depends=[]; }; communication = derive2 { name="communication"; version="0.1"; sha256="08fkllwwcw2llpg5ivxhqghc88qfg1vdy0ciif3xazhhymb8wavb"; depends=[abind diagram GGally ggplot2 gtable gtools igraph magrittr plyr purrr RColorBrewer Rcpp RcppArmadillo reshape2 scales signal tuneR useful wrassp]; }; + comorbidPGS = derive2 { name="comorbidPGS"; version="0.3.4"; sha256="1dy8yfyy88vw2x8mk6n3nx2dbkf17m4ibvbkxhrywralvll0wspa"; depends=[ggplot2 MASS nnet]; }; comorbidity = derive2 { name="comorbidity"; version="1.0.7"; sha256="189z23a66mz10rzqzgljkygyrgishm4mzzrqhqs1ba335dzvzm3d"; depends=[checkmate data_table stringi]; }; comorosmaps = derive2 { name="comorosmaps"; version="1.0.0"; sha256="1rjsgvln5wa7bbh4iqpfvmdqvmx4cgl8mxxkar76rkam9r54hwhv"; depends=[dplyr magrittr sf]; }; compHclust = derive2 { name="compHclust"; version="1.0-3"; sha256="0agay7rn5mrw07imz4l547b7m9pfcg3rhz4krfxrvg1q2z2kryvj"; depends=[]; }; @@ -8065,6 +8217,7 @@ in with self; { compindPCA = derive2 { name="compindPCA"; version="0.1.0"; sha256="1v7fppbb1pswd1d1bw0szmmjc51smnmal5psd98ms5cfm7yv597g"; depends=[factoextra]; }; compindexR = derive2 { name="compindexR"; version="0.1.3"; sha256="1glc1y6wa1g7zxj1xwj0fgcfsy118xhd637gi8zsz7l9vxj614cp"; depends=[car dplyr NlcOptim pracma]; }; completejourney = derive2 { name="completejourney"; version="1.1.0"; sha256="0ysbpmd7rglz3diy2cpcgvmmcnysradb4ddiwix7kbhzrhvhrdrs"; depends=[curl dplyr progress stringr tibble zeallot]; }; + complex = derive2 { name="complex"; version="1.0.0"; sha256="1f1xyvapswfsd7gbw8279m1pdjrry68hkci69d9h3gwav2v3fi4l"; depends=[greybox legion mvtnorm nloptr pracma Rcpp RcppArmadillo]; }; complexNet = derive2 { name="complexNet"; version="0.2.0"; sha256="199zxqsbasd1j598srpb10y8mjw2l4plra1121i9sdsf40bvd7aw"; depends=[]; }; complexity = derive2 { name="complexity"; version="1.1.2"; sha256="0y1rlz456mny4d0kr8rx26qg5frr3zxsbzm1cc76h475vad4ns28"; depends=[combinat shiny]; }; complexlm = derive2 { name="complexlm"; version="1.1.2"; sha256="0ykshrqia09pklkwhvjc8mfn005yq5wxfpjsbimg8gp38xch3wvn"; depends=[MASS mathjaxr pracma]; }; @@ -8074,10 +8227,9 @@ in with self; { compound_Cox = derive2 { name="compound.Cox"; version="3.30"; sha256="0yl2c51kl6q2j50av1acyaqcj37y4qhk9mjp7niqzq9s9zj2hnp0"; depends=[MASS numDeriv survival]; }; comprehenr = derive2 { name="comprehenr"; version="0.6.10"; sha256="1wlc06swm45nxg9hgik3wj832sr074i3p0j5kxm0i2r74klfy22w"; depends=[]; }; compute_es = derive2 { name="compute.es"; version="0.2-5"; sha256="00133s3l3g70xrfnxgxhvbjr8izvaj9h0c73iaiyjmlgj84x69m8"; depends=[]; }; - comradesOO = derive2 { name="comradesOO"; version="0.1.1"; sha256="0x0y3c4ihfss6rxdd9fws506vip9rr11485icxq41rp4x8zm2rk9"; depends=[doParallel foreach GenomicRanges ggplot2 ggrepel heatmap3 igraph IRanges MASS mixtools R4RNA RColorBrewer reshape2 RRNA S4Vectors seqinr tidyverse TopDom]; }; comsimitv = derive2 { name="comsimitv"; version="0.1.5"; sha256="0g1b14bx0dgy7y24gxlj0r2sgiild14cvr1zmf37df7g3bswn112"; depends=[MASS vegan]; }; - comstab = derive2 { name="comstab"; version="0.0.2"; sha256="14xa50badffn3jljvc1rdmnl3w167hn7hd5f8a5zl5lwlb9miy8w"; depends=[Ternary]; }; - comtradr = derive2 { name="comtradr"; version="0.4.0.0"; sha256="0hlvfz3xg05hfhpm1i4wzprqhyric57n2rmc25mr9q047r6bl3mh"; depends=[askpass cachem cli fs httr2 lifecycle lubridate memoise poorman purrr rappdirs readr rlang stringr]; }; + comstab = derive2 { name="comstab"; version="0.0.3"; sha256="0rzgsc4jd65m7wrpf68p83cvngqk2z3dn7src8m47ampmwk131iq"; depends=[Ternary]; }; + comtradr = derive2 { name="comtradr"; version="1.0.1"; sha256="0mdckqnsx8xgidbw1sa39y9l6kbsvv41vbw65jfk0irlxqs11v9q"; depends=[askpass cachem cli fs httr2 lifecycle lubridate memoise poorman purrr rappdirs readr rlang stringr]; }; con2aqi = derive2 { name="con2aqi"; version="0.1.0"; sha256="1gdd1y6xg26fz199hvryzsnp16qbsz13chqqxyxnkgrai1l72mhf"; depends=[]; }; con2lki = derive2 { name="con2lki"; version="0.1.0"; sha256="005bk3y7il94h7zlkdjlibm1zm9yplbbzlybdjxmckh67sr6d03x"; depends=[]; }; conStruct = derive2 { name="conStruct"; version="1.0.6"; sha256="00mmlmqk3wixjycmn2wybq4vkq91jmvhjab6pyvfzk1nh3nq428i"; depends=[BH caroline doParallel foreach gtools Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; @@ -8090,8 +8242,6 @@ in with self; { concom = derive2 { name="concom"; version="1.0.0"; sha256="1rqb04kv4ygx1rpnj4dqa3jnx3iy9a3c9d8x3bci969zd9lk7kzb"; depends=[BH english Rcpp rgl Rvcg]; }; concorR = derive2 { name="concorR"; version="0.2.1"; sha256="15pi24xka83p3hm33rfs9vnfkzywmvpz3hpncgqmc9ifwag0zgra"; depends=[igraph sna]; }; concordance = derive2 { name="concordance"; version="2.0.0"; sha256="1xlm0c91bsbij8dr23fh781c6bg8l74kma6x7nnapkpm7jim279x"; depends=[dplyr purrr rlang stringr tibble tidyr]; }; - concordancer = derive2 { name="concordancer"; version="1.0.2"; sha256="1hkm0ybzaiyd2qsic11gjkq2iw7j9rw85rfgrss0qmnak506kim7"; depends=[Rcpp]; }; - concrete = derive2 { name="concrete"; version="1.0.5"; sha256="05hl3ikdh8776hgw0wqz6acir8brkszgg01169q2v1dhgcsnfyjb"; depends=[data_table MASS nleqslv origami Rcpp RcppArmadillo SuperLearner survival zoo]; }; concstats = derive2 { name="concstats"; version="0.1.6"; sha256="1gcv6lsrfdb12alaksmw40fv8p909hifjwrrgy9r12nb4ci3fg0x"; depends=[]; }; cond = derive2 { name="cond"; version="1.2-3.1"; sha256="1j0gf28mg2j6ahs83nk662bix1lb2c9184vn8sblw433zxqaa2ny"; depends=[statmod survival]; }; condGEE = derive2 { name="condGEE"; version="0.2.0"; sha256="09vbwpn4i37cn8gs9pr62mvzzbqrfm756370zas97kjbnmx8glbj"; depends=[numDeriv rootSolve]; }; @@ -8108,8 +8258,8 @@ in with self; { condusco = derive2 { name="condusco"; version="0.1.0"; sha256="0zydinzlksynkz4r712rzv9qqdx8dkdz3h1ygi9cfmd6hya3580s"; depends=[assertthat bigrquery DBI jsonlite]; }; condvis = derive2 { name="condvis"; version="0.5-1"; sha256="1ngxqfa0mr86cv610da4ljypxpdvx0n5pfgj3zfksnwxlwc0dvbj"; depends=[MASS]; }; condvis2 = derive2 { name="condvis2"; version="0.1.2"; sha256="0zxr0m50gyg5b1ghdx5ysq8f389gg00zx719zqb47ign83xlbn63"; depends=[cluster colorspace DendSer ggplot2 gower plyr RColorBrewer scales shiny]; }; - coneproj = derive2 { name="coneproj"; version="1.17"; sha256="1lxxap6zd6h35w0kkxdnnbi8a4j5c78wcfslm5823dx9apg28q0s"; depends=[Rcpp RcppArmadillo]; }; - conf = derive2 { name="conf"; version="1.8.3"; sha256="1gl9y4ci3x86xmggwr2jc9skzcqrk5nky3b0dvflw1lhscgr9998"; depends=[fitdistrplus pracma rootSolve statmod]; }; + coneproj = derive2 { name="coneproj"; version="1.19"; sha256="0whnjdc24214kja1qbbyy95rmssabkq2x85p81nslcclr2krnxi2"; depends=[Rcpp RcppArmadillo]; }; + conf = derive2 { name="conf"; version="1.9.1"; sha256="12zc5psfaldgyqmlfa8bf04ibqyxcszmry9fw1ab8brn7fh6vg7i"; depends=[fitdistrplus pracma rootSolve statmod]; }; conf_design = derive2 { name="conf.design"; version="2.0.0"; sha256="06vdxljkjq1x56xkg041l271an1xv9wq79swxvzzk64dqqnmay51"; depends=[]; }; confSAM = derive2 { name="confSAM"; version="0.2"; sha256="1l67ndya07hh0yqfbabfhsvp3hryklx0022grpr0cb7ff88d1zam"; depends=[]; }; confcons = derive2 { name="confcons"; version="0.3.1"; sha256="1a9v2dzldnbmhn5fz30d8y8nhbgczgp20rag6ck6h4xjgwqm4yv1"; depends=[]; }; @@ -8117,6 +8267,7 @@ in with self; { config = derive2 { name="config"; version="0.3.2"; sha256="0r8hjg7jrhr9lncb82xmq2slygv3slacd2w8ds6shnvdp3122p3v"; depends=[yaml]; }; configr = derive2 { name="configr"; version="0.3.5"; sha256="1qlfza9fwqdhw37gxhgxgp4x2dg1qlvdw0rf9fn6a8hgjaj9z8a3"; depends=[glue ini jsonlite RcppTOML stringr yaml]; }; configural = derive2 { name="configural"; version="0.1.5"; sha256="1javknjl9ycb6rz77rhzya8yspm9m6mdjwl1waq1akgpiizk1pnl"; depends=[]; }; + confintROB = derive2 { name="confintROB"; version="1.0-1"; sha256="13fbq4zxs90sy49c55b9i2i8yq3g3p4p45cx30rs7yrb3610zkfb"; depends=[foreach lme4 MASS mvtnorm tidyr]; }; confinterpret = derive2 { name="confinterpret"; version="1.0.0"; sha256="0qldaqpx7kpk71zfwv465jrscwzc9w3xfv52i4h01k9aw3q6m8ja"; depends=[]; }; confintr = derive2 { name="confintr"; version="1.0.2"; sha256="0gi9cnk2cd67vmywrkb19g6f9gr8k999kg0k03khad7lgqp4l43s"; depends=[boot]; }; conflicted = derive2 { name="conflicted"; version="1.2.0"; sha256="121h4b4rms23szcfs1nrbgdk812d61vhrmwn9lgpsgnsaaxqd6y9"; depends=[cli memoise rlang]; }; @@ -8133,19 +8284,19 @@ in with self; { conjurer = derive2 { name="conjurer"; version="1.7.1"; sha256="09ypjh8dlf8if9a2fb1sgzp5ds68vr5krk7fk7rhwi16lpxykwh9"; depends=[httr jsonlite]; }; conleyreg = derive2 { name="conleyreg"; version="0.1.7"; sha256="1mvbzqd83vd54ig4kbi1v3h4v0j6pyj8a5ja1f3w2n7k8aszy748"; depends=[data_table doParallel fixest foreach lmtest lwgeom Matrix Rcpp RcppArmadillo Rdpack s2 sf]; }; conmet = derive2 { name="conmet"; version="0.1.0"; sha256="0iwr8mmh9lk0psqxkgnd7ldhg57ivbkv0b3a18gli06983mhzjdc"; depends=[dplyr DT foreign Hmisc lavaan openxlsx purrr semTools shiny shinydashboard shinyWidgets stringr summarytools waiter]; }; - connectapi = derive2 { name="connectapi"; version="0.1.3.1"; sha256="00fxy94a0nyw608b1cklh603zql027wqaarxmxwy5f1l7arnwd4s"; depends=[bit64 config dplyr fs glue httr jsonlite lifecycle magrittr progress purrr R6 rlang tibble uuid vctrs yaml]; }; + connectapi = derive2 { name="connectapi"; version="0.2.0"; sha256="0k3z30kgz8yl07kxfbqy1w8bdr0viyglibxv6y36f46q6nf1mf6a"; depends=[bit64 fs glue httr jsonlite lifecycle magrittr purrr R6 rlang tibble uuid vctrs]; }; connections = derive2 { name="connections"; version="0.2.0"; sha256="1hqsp5y32n0v5rij86clk3wmghc32zh9h3s6pjn0yjjsg3v1bvf6"; depends=[DBI dbplyr dplyr pins rscontract uuid]; }; connectoModa = derive2 { name="connectoModa"; version="1.0.0"; sha256="0gnmrx6li9yx231nn73m921sp8wwxrd9pbmni37gsqjj7lcyglp8"; depends=[httr jsonlite readr]; }; connectwidgets = derive2 { name="connectwidgets"; version="0.2.1"; sha256="0lgr36699hnjwkjx56akwwnzkl5qm587yhqamxr6a53nh1j3h11y"; depends=[bslib crosstalk digest dplyr glue htmltools htmlwidgets httr jsonlite magrittr purrr R6 reactable reactR rlang sass tibble]; }; conogive = derive2 { name="conogive"; version="1.0.0"; sha256="0a8v7v0fds0psfnbx9x45way8z1f1xn2ncgbrn5rb6fjq0a1zs4x"; depends=[assertthat checkmate mvtnorm psych]; }; conos = derive2 { name="conos"; version="1.5.2"; sha256="0p66gb308w2zfsppm0k1vsvgr33kzzhql0vh7l39vlsgayi00skk"; depends=[abind ComplexHeatmap cowplot dendextend dplyr ggplot2 ggrepel gridExtra igraph irlba leidenAlg magrittr Matrix N2R R6 Rcpp RcppArmadillo RcppEigen RcppProgress reshape2 rlang Rtsne sccore]; }; - conover_test = derive2 { name="conover.test"; version="1.1.5"; sha256="0f1p10klidk1xic1wd48j9rjh2fb3z6pfjx4y021lglx1w3av68k"; depends=[]; }; + conover_test = derive2 { name="conover.test"; version="1.1.6"; sha256="0x0wzxdg4pkkr5yqrapvq04i1gc7qa6c7f44skcmq3qpfziq3fpj"; depends=[]; }; conquer = derive2 { name="conquer"; version="1.3.3"; sha256="1fnyjym21i9hw2d1c9da0wvjzbi9abn46n0lg6if5w2asxg1bim2"; depends=[Matrix matrixStats Rcpp RcppArmadillo]; }; conquestr = derive2 { name="conquestr"; version="1.3.0"; sha256="0f7mrx9ss9ja0maci2ydffz90i7v6p9x8wsgbz78dlw8zv2vc630"; depends=[dplyr ggplot2 ggrepel kableExtra magrittr Rcpp rlang stringr tidyr tidyselect zlib]; }; conrad = derive2 { name="conrad"; version="1.0.0"; sha256="0n0snn7ppmr1l5y0978sl6bj614p0b5vvh4hw55pjbj9qn1fshaj"; depends=[httr2 jsonlite magrittr]; }; conserveR = derive2 { name="conserveR"; version="1.0.4"; sha256="05b1pqgbd9sh4lyg9zqjfg4019dqp8xj3k1w31qqdld8m3g5lrd6"; depends=[cowplot GGally ggplot2 ggrepel magrittr network rlang scales sna]; }; consolechoice = derive2 { name="consolechoice"; version="1.1.1"; sha256="06xlwrjc9bj8r2ii160mclg56mw9fw2wzms3q68rcb8ril0hqvd3"; depends=[]; }; - consort = derive2 { name="consort"; version="1.2.1"; sha256="03xkypy4r84mdif6m331c27haxnyi1s87vvj2f83xxw0m0s5im5j"; depends=[]; }; + consort = derive2 { name="consort"; version="1.2.2"; sha256="12gr1diyy2azy1fbh8z129lkm0ahwvm98j5hqxv93yp089a02l8c"; depends=[]; }; consortr = derive2 { name="consortr"; version="0.9.1"; sha256="1c71wvr7sckrv4k65l71l160z6d9amzyydbi6mf2b79zh9zv8g1g"; depends=[data_table DiagrammeR dplyr magrittr purrr rlang shiny shinydashboard tibble]; }; constants = derive2 { name="constants"; version="1.0.1"; sha256="11nliijwphqphik95b3xpawpjg7w4s089wdhjci5bw4va4bgd1xm"; depends=[]; }; constellation = derive2 { name="constellation"; version="0.2.0"; sha256="1d49rnyf2z3bvx158nsmgmb0x7xcgxl9f8y98pwg5wlqck7af99q"; depends=[data_table]; }; @@ -8167,7 +8318,7 @@ in with self; { controlTest = derive2 { name="controlTest"; version="1.1.0"; sha256="19r8nvi35ldzgayifskjj706fv76hv6sj68yvggybp27rgyqbjfl"; depends=[survival]; }; controlfunctionIV = derive2 { name="controlfunctionIV"; version="0.1.1"; sha256="0g0nakc1mss7837xhs8bymy4cncljjkj7k0n4dvw44gxbc2l8j15"; depends=[AER dr Formula orthoDr]; }; contsurvplot = derive2 { name="contsurvplot"; version="0.2.1"; sha256="0z0s1ym9np9l8pmgbja46w25zr415laa1w68mjz04hq9wrzjjaca"; depends=[dplyr foreach ggplot2 riskRegression rlang]; }; - convdistr = derive2 { name="convdistr"; version="1.6.1"; sha256="1jkd5d257qaby99n7f2vyiqchg2zfnnm01bw9qp2cg92bi7ac22d"; depends=[dplyr extraDistr ggplot2 MASS pryr RColorBrewer SHELF shiny tidyr]; }; + convdistr = derive2 { name="convdistr"; version="1.6.2"; sha256="1mi5sa9lyn9pdmdlrah8fvxdzm1gqblh3r50y1g40902cryf5yds"; depends=[dplyr extraDistr ggplot2 MASS pryr RColorBrewer SHELF shiny tidyr]; }; convergEU = derive2 { name="convergEU"; version="0.7.3.2"; sha256="01ajzjj0ahlbv0q708hj7cw98b0dahnhkxrd79nrs1wb06rr2j9x"; depends=[broom caTools dplyr eurostat ggplot2 ggpubr leaflet purrr rlang rmarkdown stringr tibble tidyr tidyselect]; }; convertbonds = derive2 { name="convertbonds"; version="0.1.0"; sha256="0xb6b5xqcgapmvrq3ivcknsbg9m4zkwff7i7l7j78nqafdm45jni"; depends=[]; }; convertid = derive2 { name="convertid"; version="0.1.8"; sha256="0mprymgh5wbh9x6kn98q4r6c6rp2l108ddmp2g7lh9m635ys6v8m"; depends=[AnnotationDbi assertthat BiocFileCache biomaRt httr org_Hs_eg_db org_Mm_eg_db plyr rappdirs stringr xml2]; }; @@ -8180,15 +8331,14 @@ in with self; { cookiemonster = derive2 { name="cookiemonster"; version="0.0.3"; sha256="1fs8a7i2h1v4xvcjnccnvxapiprffyz49pgrdjp67k14r6nk2fha"; depends=[cli openssl rappdirs stringi tibble urltools vctrs]; }; cookies = derive2 { name="cookies"; version="0.2.3"; sha256="1dpil57grnqn34b682fakzsrh2xghc566nhqdgnrjd7ly59v0z3x"; depends=[cli clock glue htmltools httpuv jsonlite purrr rlang shiny vctrs]; }; coop = derive2 { name="coop"; version="0.6-3"; sha256="0ww99ssgawsgn6rqy838wbx6iirzdrzyxirvz084ih8j50blx420"; depends=[]; }; - coopProductGame = derive2 { name="coopProductGame"; version="2.0"; sha256="1348pgqfvvysdixsjibgkvwjsmqasnlmwf9kyr39lw8jb81z25h0"; depends=[dplyr GameTheory ggplot2 gtools kappalab lpSolveAPI]; }; copBasic = derive2 { name="copBasic"; version="2.2.4"; sha256="0wydq03c9pvbvmcrxqw2n86ny655lhkd40ag60k6d3hjvmmv5vn6"; depends=[lmomco randtoolbox]; }; copCAR = derive2 { name="copCAR"; version="2.0-4"; sha256="1wvp7khp0f0x6skiq1d6npndb09ak6d6ijmx907gfrd6b0ydaklb"; depends=[mcmcse numDeriv Rcpp RcppArmadillo spam]; }; copcor = derive2 { name="copcor"; version="2023.8-27"; sha256="0fs6zaxjv7ww2f35hwbdgb810cb4mcqxg260fxk3pfcfq3rwdw9a"; depends=[kyotil]; }; cope = derive2 { name="cope"; version="0.2.3"; sha256="1r02nb6wy25ixhdcbqqz167s7ny3hydpxfxry5ar4136qvcamgyy"; depends=[abind fields maps MASS Matrix mvtnorm nlme]; }; - copent = derive2 { name="copent"; version="0.4"; sha256="1v9kv6aw9q43y7mzsmklq0m76sykfs162hwy204k2xcpmnazgdkm"; depends=[]; }; - cophescan = derive2 { name="cophescan"; version="1.4.0"; sha256="0kanrdmkk91hs09acgz7kxw6szqfnr8mxi8n01rpnz2c1fwmvgpy"; depends=[coloc data_table dplyr ggplot2 ggrepel magrittr matrixStats pheatmap Rcpp RcppArmadillo viridis]; }; + copent = derive2 { name="copent"; version="0.5"; sha256="0ymjpwqbdfbyrvszi5avpbx086i4lwrxgxysr0rlnh2wfm849vsj"; depends=[]; }; + cophescan = derive2 { name="cophescan"; version="1.4.1"; sha256="0lnc20f1xaijibza4px9m47fy70jz9y9y5m7wk5h50kb4dh6ywxh"; depends=[coloc data_table dplyr ggplot2 ggrepel magrittr matrixStats pheatmap Rcpp RcppArmadillo viridis]; }; coppeCosenzaR = derive2 { name="coppeCosenzaR"; version="0.1.3"; sha256="1chwsfyaf5rmlsypr43n7px8b2220dfa5mzcriq1swylgbx4181l"; depends=[]; }; - copre = derive2 { name="copre"; version="0.2.0"; sha256="0xb1xa134r145qaycl0ldldx521gvjlwd9c64nnwmllh01iv7ihb"; depends=[abind BH dirichletprocess pracma Rcpp RcppArmadillo]; }; + copre = derive2 { name="copre"; version="0.2.1"; sha256="1lgps3wmjp3ja13xd33q41xb3kc56vmyidjpsmm5c2y263pm1m8i"; depends=[abind BH dirichletprocess pracma Rcpp RcppArmadillo]; }; cops = derive2 { name="cops"; version="1.3-1"; sha256="17lq7ag0bwg3i7jvzca4qyzg8ixhdikrcgpgskkm26i83886zid2"; depends=[cmaes cordillera crs dfoptim GenSA MASS minqa NlcOptim nloptr pso rgenoud Rsolnp scatterplot3d smacof subplex]; }; copula = derive2 { name="copula"; version="1.1-3"; sha256="19kp6q052jp0wsn2zh6wz6m9hk04nhwlc2pqwrma9ynny6s6q6cv"; depends=[ADGofTest colorspace gsl lattice Matrix mvtnorm numDeriv pcaPP pspline stabledist]; }; copulaData = derive2 { name="copulaData"; version="0.0-2"; sha256="052vr5961pqqfk75yabnna345qgrhrjwzavx5244c6mark4xsyxb"; depends=[]; }; @@ -8230,7 +8380,7 @@ in with self; { corrcoverage = derive2 { name="corrcoverage"; version="1.2.1"; sha256="0r5n2g341jlinwrxxwxkav9i6qsf097pmfi07aiq663b13r3864x"; depends=[data_table magrittr matrixStats Rcpp RcppArmadillo]; }; correctR = derive2 { name="correctR"; version="0.2.1"; sha256="1qncaynl0fs06w97wbj4704whbcjs5vjqqhb1mkj95ngwi0rp37l"; depends=[]; }; correctedAUC = derive2 { name="correctedAUC"; version="0.0.3"; sha256="0c2kq7asq5mp48p8niqb84wnw4q2q2985wxbrywrhsszm9p3xspb"; depends=[ICC mnormt]; }; - correlation = derive2 { name="correlation"; version="0.8.4"; sha256="07fz7wmvrcd6b023jhj3bsrvg4w6i7f1v99jslm0gj84vzmnqzbs"; depends=[bayestestR datawizard insight parameters]; }; + correlation = derive2 { name="correlation"; version="0.8.5"; sha256="0b5vq7lvvwcv0sw54548ncn85nq6i78dpm44dfvrl23vg65pff0y"; depends=[bayestestR datawizard insight parameters]; }; correlationfunnel = derive2 { name="correlationfunnel"; version="0.2.0"; sha256="0xil7cihqk7gzpy0q97sg5sw5z0gy7zqvx0f0bizcfks9gwp43cv"; depends=[cli crayon dplyr forcats ggplot2 ggrepel magrittr plotly purrr recipes rlang rstudioapi stringr tibble tidyr]; }; correlbinom = derive2 { name="correlbinom"; version="0.0.1"; sha256="1ix3ccxzr7vqblbda5awsva3h95b69v7kc6adz622bbi8r36xxcq"; depends=[Rmpfr]; }; correspondenceTables = derive2 { name="correspondenceTables"; version="0.7.4"; sha256="1078da9m8j8ph314f6bdvdcd70rfmjdk7cscchfpq5ggyr2hkrpk"; depends=[data_table]; }; @@ -8246,6 +8396,7 @@ in with self; { corto = derive2 { name="corto"; version="1.2.4"; sha256="1rlr96kdn59vbcsjwys3brlaa8fm0jkg331dnr6fcq1z798snkb3"; depends=[dplyr gplots knitr pbapply plotrix rmarkdown]; }; corx = derive2 { name="corx"; version="1.0.7.2"; sha256="0dyrxw90xrs1sqzniqxh8rnafcng38qrm5izwlgpfafihipx9ss8"; depends=[clipr crayon ggcorrplot ggplot2 ggpubr glue moments ppcor tidyselect]; }; cosa = derive2 { name="cosa"; version="2.1.0"; sha256="15ygpaqd48xqx0h08v0nf73yzif63r2nzcznlmk0ck2ydx4n85fp"; depends=[msm nloptr]; }; + cosimmr = derive2 { name="cosimmr"; version="1.0.12"; sha256="1gvkzp0l8zkana78llp4r734cs12dibysh5hylafmi81byibyxyp"; depends=[bayesplot checkmate ggnewscale ggplot2 R2jags Rcpp RcppArmadillo RcppDist reshape2 viridis]; }; cosinor = derive2 { name="cosinor"; version="1.2.3"; sha256="0nyvzmqk0rhx10fki29hcrz014bv3r40adqd5d6rbcz66kc4sjy3"; depends=[ggplot2 shiny]; }; cosinor2 = derive2 { name="cosinor2"; version="0.2.1"; sha256="1pp0z86fflqkkllfrzx3vj98kzxjwnawr4a2d8z5q6zhq6v5qrvf"; depends=[cosinor cowplot ggplot2 Hmisc magrittr matrixStats purrr scales stringr]; }; cosmicsig = derive2 { name="cosmicsig"; version="1.1.1"; sha256="1xwbfinh73rfdww58zpqmk17ixpzq5rr6cdf4zlnj25xwvj5458l"; depends=[]; }; @@ -8263,7 +8414,7 @@ in with self; { countcolors = derive2 { name="countcolors"; version="0.9.1"; sha256="1gnwmw3inh8asbk6qba34vzx1k2cnh4m9d1346gxhzhlxvl6xiza"; depends=[colordistance jpeg png]; }; countdata = derive2 { name="countdata"; version="1.3"; sha256="1vscm3xq8cds0zd4k8qc9di4yjslfpxl5y0glmp67ldk7mvqz0q6"; depends=[]; }; countdown = derive2 { name="countdown"; version="0.4.0"; sha256="05mnxq17z867jzi53bcvljcmpswsq9xcknddzs6k57chjl4klrwj"; depends=[htmltools prismatic whisker]; }; - counterfactuals = derive2 { name="counterfactuals"; version="0.1.2"; sha256="1gv6kgd932k74lwrv38zdpyf56j6mlr0kh5jky66zklb00zklkl3"; depends=[bbotk checkmate data_table iml miesmuschel paradox R6 StatMatch]; }; + counterfactuals = derive2 { name="counterfactuals"; version="0.1.4"; sha256="1sv7gswhwnhci07lvgvcnfvb7zav76r3576ymp704l6llhs44ybm"; depends=[bbotk checkmate data_table iml miesmuschel paradox R6 StatMatch]; }; countfitteR = derive2 { name="countfitteR"; version="1.4"; sha256="1aq7v2fy24pf3r6fkmcwvs18r2xc2l1bqablp53xfc7b6kxq3vqn"; depends=[ggplot2 MASS pscl shiny]; }; countgmifs = derive2 { name="countgmifs"; version="0.0.2"; sha256="0k6fjg0v9n7vi89wd025gdjh1q3l6nnc5yn8i2bfw0i5vmv8rhi3"; depends=[MASS]; }; countland = derive2 { name="countland"; version="0.1.2"; sha256="1nlnri7l8v2h35r7ps8byv8mmwnir1pyimaa937wr73f1mk9m0l9"; depends=[ggplot2 Matrix rlang]; }; @@ -8272,6 +8423,7 @@ in with self; { countrycode = derive2 { name="countrycode"; version="1.6.0"; sha256="1dix4prcavwbi7l7ifw1frvpmqqdcrvk4c45xl7ckg6068713nzr"; depends=[]; }; countsplit = derive2 { name="countsplit"; version="4.0.0"; sha256="0b406mpf5gqspjj828qbqx6mc5ab97mh5w4pip8hb8j74q8szpcc"; depends=[Matrix Rcpp]; }; countts = derive2 { name="countts"; version="0.1.0"; sha256="11pyj5s2vyw209inapiw9pvk0s1aq3r2c1xq0dnc83sz82bxx6c4"; depends=[fastDummies ggplot2 MASS matrixStats]; }; + coursekata = derive2 { name="coursekata"; version="0.17.0"; sha256="0g0hz4zbqmz7rxhvnd67hx0mfqx997k27p1382j0qwqa26bv943h"; depends=[cli dslabs ggformula ggplot2 glue lsr Metrics mosaic pak palmerpenguins purrr rlang supernova vctrs viridisLite]; }; covBM = derive2 { name="covBM"; version="0.1.0"; sha256="0ky1lhr8m4hy2ss1nr2xymf6cmj1rr8px8zsxna6bsisf5bq4j4w"; depends=[nlme]; }; covKCD = derive2 { name="covKCD"; version="0.1"; sha256="0rbrhdrrb47gkm8nk8mmlgrr1fsk53fycl9zspgr9085xax2bf2r"; depends=[]; }; covRobust = derive2 { name="covRobust"; version="1.1-3"; sha256="0zcfala4l0j4w0sx5hlw40vxiypans3d7pgkxy25nj0d2m1jkvba"; depends=[]; }; @@ -8301,10 +8453,10 @@ in with self; { covidmx = derive2 { name="covidmx"; version="0.7.7"; sha256="1m73pxpn080w7sby88spz2pfjw1v479m9fa74ag25mkdymfbh02d"; depends=[cli DBI dplyr duckdb fs pins RCurl readr readxl rlang stringr tibble tidyr]; }; covidnor = derive2 { name="covidnor"; version="2023.05.18"; sha256="1aidi1bwsp1a8iym5b6chmv95cxrafhjgzn1zaajbijlgrjdqixc"; depends=[data_table]; }; covidprobability = derive2 { name="covidprobability"; version="0.1.0"; sha256="00kiwxhkbq70650azgd6ylh7w7w4h5l8l7rmr2bijlm05xn3g154"; depends=[]; }; - covidsymptom = derive2 { name="covidsymptom"; version="0.9.3"; sha256="0svfc911n6cl056vn7l9khg4c6rc54qhxsgjg3jpxqvikyqmmrx7"; depends=[]; }; + covidsymptom = derive2 { name="covidsymptom"; version="1.0.0"; sha256="03whr9qnsflpa3l9lb5f5w7c26yva74jbkykjb7xj5pnhazpm985"; depends=[stringi usethis]; }; covr = derive2 { name="covr"; version="3.6.4"; sha256="0al6n4gnnvgxk968skqnajpqpqyl6kpam3fmn782kihhcl1h8qib"; depends=[crayon digest httr jsonlite rex withr yaml]; }; covsep = derive2 { name="covsep"; version="1.1.0"; sha256="19dvwhl85yx9ddwxvnq5sdd534s6llcw61gckrav48hq49x1bqld"; depends=[mvtnorm]; }; - covsim = derive2 { name="covsim"; version="1.0.0"; sha256="0kzlqdhx67hfm0f53yb438qfi4vlcf2j3cpyj2r49zgpwwgfk21p"; depends=[gsl lavaan MASS Matrix nleqslv PearsonDS Rcpp rvinecopulib tmvtnorm]; }; + covsim = derive2 { name="covsim"; version="1.1.0"; sha256="0pk6jfh7bcpqm63zdlrkz1cqdgwwkkdjlflw8yb8fq6p25bmppih"; depends=[lavaan MASS Matrix nleqslv PearsonDS rvinecopulib tmvtnorm]; }; cowbell = derive2 { name="cowbell"; version="0.1.0"; sha256="1zz0g30zvqfk5lh09y90iq3s7x2wwbs852i3d56mfp926gxdxc2y"; depends=[ggplot2 misc3d rgl]; }; cowplot = derive2 { name="cowplot"; version="1.1.3"; sha256="0wxjynpbamyimpms7psbac7xgwswzlidczpc037q20y5yld9fml7"; depends=[ggplot2 gtable rlang scales]; }; cowsay = derive2 { name="cowsay"; version="0.9.0"; sha256="18jr8v0c4vvwvixklcl3kggwzhq1xnpi3brdjiby48zh873b2chd"; depends=[crayon fortunes rmsfact]; }; @@ -8320,15 +8472,16 @@ in with self; { cp4p = derive2 { name="cp4p"; version="0.3.6"; sha256="1zddkkj0ynvfck3kw1682wffbxw0d3dc4flmxxp03lclq70fc8bd"; depends=[limma MESS multtest qvalue]; }; cpa = derive2 { name="cpa"; version="1.0.1"; sha256="10g2pvjz396m3mis1bp8bggx9gvbhdd5yqf3sgwkimn9wgccymbq"; depends=[]; }; cpd = derive2 { name="cpd"; version="0.3.2"; sha256="049df4ip3x7v9zviw7b4m1hp2w4gpfi6cq066mqal41frgvfmwdb"; depends=[dgof hypergeo Rdpack]; }; - cpfa = derive2 { name="cpfa"; version="1.1-2"; sha256="04b2v4ilhpqpkl61hmqvfwbsjd44nb5mgyw2a0av0i5sh4m7c2ln"; depends=[doParallel e1071 foreach glmnet multiway nnet randomForest rda]; }; + cpfa = derive2 { name="cpfa"; version="1.1-4"; sha256="075bbp56sx6n1bzdign9iyk2q9j35b6mrqpjwk9aiw27k4n6wmxj"; depends=[doParallel e1071 foreach glmnet multiway nnet randomForest rda xgboost]; }; cpi = derive2 { name="cpi"; version="0.1.4"; sha256="1gz92jcl8wg2vp8qhnkn37l2xs8wjdbjvnga22v9n943k9zsk2kh"; depends=[foreach knockoff lgr mlr3]; }; cplm = derive2 { name="cplm"; version="0.7-12"; sha256="1m0b0jksl1y90q4sdhjspby4hafxxdgra8sbicd5rsrwq4hzwyxc"; depends=[biglm coda ggplot2 Matrix minqa nlme reshape2 statmod tweedie]; }; cplots = derive2 { name="cplots"; version="0.5-0"; sha256="12nac8hywhsfh2fcv30w36la46hvvp5mwc2rrq34smraig0dq8f3"; depends=[circular]; }; cpm = derive2 { name="cpm"; version="2.3"; sha256="07zbvc5jkwv76lkzby6r073fxjsqgnrdl2w9lcph577knnip89jx"; depends=[]; }; cpmBigData = derive2 { name="cpmBigData"; version="0.0.1"; sha256="0fdch6hj6l620gj0pk8ffrl9j2rmd9jlin7yx7myfy46qij1cxpi"; depends=[benchmarkme doParallel foreach Hmisc iterators rms SparseM]; }; - cpmr = derive2 { name="cpmr"; version="0.0.8"; sha256="0s4c9466i14vv37vvmj1f6gf2n6i9ij8303xfvhc82dszmab219g"; depends=[Rfast]; }; - cpop = derive2 { name="cpop"; version="1.0.6"; sha256="0f7rxyh8m6w45cja02mip91p72bjlygrc0rdggbls50l63w1qczj"; depends=[crops ggplot2 mathjaxr pacman pracma Rcpp Rdpack]; }; + cpmr = derive2 { name="cpmr"; version="0.0.9"; sha256="0hy6h32ga7gadc01z24a8ccld0bszzjw939gbhbqbmm672k728mc"; depends=[Rfast]; }; + cpop = derive2 { name="cpop"; version="1.0.7"; sha256="082ny87ph3wz5kbp2i4yzf9g6r3bihbgfynv060fy6sv0xb9hxc1"; depends=[crops ggplot2 mathjaxr pacman pracma Rcpp Rdpack]; }; cpp11 = derive2 { name="cpp11"; version="0.4.7"; sha256="0i234s1g1vc6m2sqxia5r1gaca05znjv4bff5dj74fach9k147c0"; depends=[]; }; + cpp11armadillo = derive2 { name="cpp11armadillo"; version="0.2.5"; sha256="1bn72wwlj6k9lg36ah4r69jgpqsvlcmkzn6czwz10dgi341ca5sx"; depends=[]; }; cppRouting = derive2 { name="cppRouting"; version="3.1"; sha256="1mhp6k2kwlhyrswlxi9f0f6ndvm5968ljp3k97c2m2sfbxaablxy"; depends=[data_table Rcpp RcppParallel RcppProgress]; }; cppcheckR = derive2 { name="cppcheckR"; version="1.0.0"; sha256="1f3b8gadpiyxwxp34pd3i7s715dkm23427fp86vvnqvy9schg3ga"; depends=[htmlwidgets rmarkdown rstudioapi shiny V8 xml2]; }; cppdoubles = derive2 { name="cppdoubles"; version="0.2.0"; sha256="1m5d4lwji6yrbzb68m61zkrkchj9mv7m0sdqg2vnxzr5799whckh"; depends=[cpp11]; }; @@ -8345,9 +8498,9 @@ in with self; { cquad = derive2 { name="cquad"; version="2.3"; sha256="0m8hakw0k58v3gb24vvcs7q7l98m2nmyqv712wdn9g16krq49hnr"; depends=[Formula MASS plm]; }; cragg = derive2 { name="cragg"; version="0.0.1"; sha256="1iznv72g47r2yd26p1i06a72p8n0albgb4j4l3lndi39wrkrpbwd"; depends=[expm]; }; cramer = derive2 { name="cramer"; version="0.9-4"; sha256="0i5qg912rp8m1br00kd3iidy1v1yrmzj21xmy2wbjyyqrzakykc3"; depends=[boot Rcpp]; }; - crandep = derive2 { name="crandep"; version="0.3.6"; sha256="1wdyfyz2lk3icygqp0mm3cy3bni48hqazymnvhgl9pzy29sp6i2w"; depends=[dplyr gsl igraph pracma Rcpp RcppArmadillo rvest stringr xml2]; }; + crandep = derive2 { name="crandep"; version="0.3.9"; sha256="0g807ph2fnpg6ll4li0pgw7gd61wzyibjnl74dzl1jaq7n1ymh2h"; depends=[dplyr gsl igraph pracma Rcpp RcppArmadillo rvest stringr xml2]; }; crank = derive2 { name="crank"; version="1.1-2"; sha256="0wwbdh5sfi2bg13nrlkxxij4k053kjx9afm4gjpgs6iir6pml711"; depends=[]; }; - cranlike = derive2 { name="cranlike"; version="1.0.2"; sha256="06xgxgwpmfrwmcd0gnr9prjjbhd1y0ky1zb8yh09v0bvsf6ixnyx"; depends=[DBI debugme desc RSQLite]; }; + cranlike = derive2 { name="cranlike"; version="1.0.3"; sha256="022kya5p0f92szpw751czjka7bzq297af4i2l33892yfxkapfqfg"; depends=[DBI debugme desc RSQLite]; }; cranlogs = derive2 { name="cranlogs"; version="2.1.1"; sha256="02d9qrqyjj33naq3g7ykaw9dzzl1dq8qf13id6h7kfx1fvx9b7zd"; depends=[httr jsonlite]; }; cranly = derive2 { name="cranly"; version="0.6.0"; sha256="1i8bk6wvar21y3bsr6by7dway8khsxwbyyw554pjwdpmxs3nz030"; depends=[colorspace countrycode ggplot2 igraph stringr tm visNetwork wordcloud]; }; crassmat = derive2 { name="crassmat"; version="0.0.6"; sha256="1c4ii34vh8y5b3z2maby4cafb3n2m9bnxv3762cy0z12mbg7zk1s"; depends=[svMisc]; }; @@ -8363,9 +8516,9 @@ in with self; { credsubs = derive2 { name="credsubs"; version="1.1.1"; sha256="19l3vsjxd9lvaf67l61x9l0j4y124p93dfqzw7rl1ya5sxbdzs7a"; depends=[]; }; credule = derive2 { name="credule"; version="0.1.4"; sha256="0kwjjkavch21grx845kdcansaj0g407v7z3wmhy4whra9ic12y76"; depends=[]; }; cregg = derive2 { name="cregg"; version="0.4.0"; sha256="1a34jhdk4r9ywsrc5dc8wq5am3059cli60f6n2n8j04ls13fvlkd"; depends=[ggplot2 ggstance lmtest sandwich scales survey]; }; - crew = derive2 { name="crew"; version="0.9.0"; sha256="17g1sdjlkj7ck5y5k7la2skxkvjd474rkqzq01fgqhiixkygignk"; depends=[cli data_table getip later mirai nanonext processx promises ps R6 rlang tibble tidyselect]; }; + crew = derive2 { name="crew"; version="0.9.3"; sha256="0ap2yf86ng8wp8n2cm0br4q81pknswsynb4a1qprsshwr8l5xvl1"; depends=[cli data_table getip later mirai nanonext processx promises ps R6 rlang tibble tidyselect]; }; crew_aws_batch = derive2 { name="crew.aws.batch"; version="0.0.5"; sha256="1gssnvmszq89cfprwrgiq1gajf9q2s8kdj03gbza194p4646lj6p"; depends=[cli crew paws_common paws_compute paws_management R6 rlang tibble]; }; - crew_cluster = derive2 { name="crew.cluster"; version="0.3.0"; sha256="06rlk464c059rdjzqh0bn49ndjw14gkkpn8qd47k6r87dx3yl1b8"; depends=[crew lifecycle ps R6 rlang vctrs xml2]; }; + crew_cluster = derive2 { name="crew.cluster"; version="0.3.1"; sha256="1qn3pxyhfyb47cgyzmw2l07dhpvbf0yicxxbxh82scmlj5pqbkhf"; depends=[crew lifecycle ps R6 rlang vctrs xml2 yaml]; }; crfsuite = derive2 { name="crfsuite"; version="0.4.2"; sha256="15ldbx8g9xa6sql6is2gcqryzqb9dad1hiarvrgmizdp5fd3gxnm"; depends=[data_table Rcpp]; }; cricketdata = derive2 { name="cricketdata"; version="0.2.3"; sha256="07sj53c2ryvcichsa9b0ywmrslisbr4hkrnrf1crw7x1ym55hsan"; depends=[cli dplyr janitor lubridate readr rvest stringr tibble tidyr xml2]; }; cricketr = derive2 { name="cricketr"; version="0.0.26"; sha256="1y1zf9f59v95knggq5nna5rp7fqpv1swwvkajwqbpicc12g2azq4"; depends=[dplyr forecast ggplot2 httr lubridate plotrix scatterplot3d XML]; }; @@ -8377,6 +8530,7 @@ in with self; { criticality = derive2 { name="criticality"; version="0.9.3"; sha256="0cy08v2lqld9y9cc140hxk734r9pb66cx2c04303c9rl81gy1cmk"; depends=[bnlearn caret dplyr evd fitdistrplus ggplot2 keras magrittr reticulate scales]; }; criticalpath = derive2 { name="criticalpath"; version="0.2.1"; sha256="1b8iwvdlq5czd7p7yy6il3irrcarc23cy26vprycnyjll38lcfjz"; depends=[dplyr igraph magrittr R6 stringr tibble]; }; critpath = derive2 { name="critpath"; version="0.2.2"; sha256="0y9vbsdppi8xir1rvk8j7zvj69gjmc2whpqfcklws898rcnwck1f"; depends=[DiagrammeR dplyr ggplot2 reshape2 stringr]; }; + crm12Comb = derive2 { name="crm12Comb"; version="0.1.6"; sha256="18pmsrgpc9yy3zwhdfcks5863r2cz756vrblls9s1j7pvsl4jszm"; depends=[dplyr ggforce ggplot2]; }; crmPack = derive2 { name="crmPack"; version="1.0.5"; sha256="086r12vfp1am7aavmq5yvbgg4w7vjdabjvzlnd5la92y01dcs32h"; depends=[GenSA ggplot2 gridExtra MASS mvtnorm rjags]; }; crmReg = derive2 { name="crmReg"; version="1.0.2"; sha256="0y6xb0sxhsqcmcwbkwvk70snwqhxgzl513ld9dp53cm88qdwaj1r"; depends=[FNN ggplot2 gplots pcaPP plyr robustbase rrcov]; }; crmn = derive2 { name="crmn"; version="0.0.21"; sha256="0wp99fsw7y859gp1x22f77r9rv1m0xspbzhzgshzf7hi86xb57k5"; depends=[Biobase pcaMethods]; }; @@ -8393,21 +8547,22 @@ in with self; { cropgrowdays = derive2 { name="cropgrowdays"; version="0.2.1"; sha256="08k525882lm1x2igz1pk8g3kjiikcw68yqpic240l3lzq0x2wi3y"; depends=[dplyr httr lubridate purrr purrrlyr tibble]; }; crops = derive2 { name="crops"; version="1.0.3"; sha256="0c1xvfnr4dh720x0i3f6nvmzgv8zbs7cvp8vfa341yb92pz4d6s0"; depends=[cowplot ggplot2 magrittr memoise Rdpack reshape sets tibble tidyverse]; }; crossdes = derive2 { name="crossdes"; version="1.1-2"; sha256="0nc9jd83mm03qpd3r3hfmrf615yvvmib9kk9dh1hgz12pxhffray"; depends=[AlgDesign gtools]; }; - crosshap = derive2 { name="crosshap"; version="1.2.2"; sha256="18r4m5fplpiabgwir78qfacj0781ykqxbyfkf5zxnzs7yr0d1gl2"; depends=[cli clustree data_table dbscan dplyr ggdist ggplot2 ggpp gridExtra gtable magrittr patchwork rlang scales tibble tidyr]; }; + crosshap = derive2 { name="crosshap"; version="1.4.0"; sha256="1pr9kjad54427y8wljaghqbgin353llyfdwq278c8agqdzziwia0"; depends=[cli clustree data_table dbscan dplyr ggdist ggplot2 ggpp gridExtra gtable magrittr patchwork rlang scales tibble tidyr]; }; + crosslag = derive2 { name="crosslag"; version="0.1.0"; sha256="0kvmpl7cqgp8jlvpz42caw1mqcfkvzvpy7rkgh70isx88k4n9f6g"; depends=[gamm4 ggplot2 ggpubr lavaan mgcv rms]; }; crossmap = derive2 { name="crossmap"; version="0.4.0"; sha256="079ibxhm6877nfdqf88fhg9fjdn3vbs44jprrbhxmmbbd30nma4v"; depends=[backports cli dplyr generics lifecycle purrr rlang vctrs]; }; crossnma = derive2 { name="crossnma"; version="1.2.0"; sha256="0ma07lvf56z1ya587lb4zv8rbhzi8crnsgvh3xsz80livx9cdvp5"; depends=[coda dplyr ggplot2 magrittr meta netmeta plyr rjags rlang tidyr]; }; crossrun = derive2 { name="crossrun"; version="0.1.1"; sha256="1v2khjb77g63ls6s15z9hy81z4hyf89g58jxjl94jrkznq1c4fa4"; depends=[Rmpfr]; }; crosstable = derive2 { name="crosstable"; version="0.7.0"; sha256="1xghynjnrk89952sa9i6rxjqnnw2w2bdf722n91k1jgcg15gkvy9"; depends=[checkmate cli dplyr flextable forcats glue lifecycle officer purrr rlang stringr tibble tidyr]; }; crosstalk = derive2 { name="crosstalk"; version="1.2.1"; sha256="1w8lc3hcd1nlw541880vs3agk2i6bilyapnq9lcs3mfn2s2g0338"; depends=[htmltools jsonlite lazyeval R6]; }; - crosstalkr = derive2 { name="crosstalkr"; version="1.0.4"; sha256="0vb0p455s2gp0nm1hxm9iikxr4mal52mbkq6nv6zxr78wwsxcwa1"; depends=[doParallel dplyr ensembldb foreach ggplot2 igraph iterators magrittr Matrix Rcpp readr rlang STRINGdb stringr tibble tidyr withr]; }; - crossurr = derive2 { name="crossurr"; version="1.0.6"; sha256="16fq6hdfc6nsdijj63fji3bn3hp40m350qjxhf8a3xs5j86vf43j"; depends=[dplyr gbm glmnet glue pbapply purrr ranger RCAL rlang SIS SuperLearner tibble tidyr]; }; + crosstalkr = derive2 { name="crosstalkr"; version="1.0.5"; sha256="1p4grkh6kripkpirs2hrqwv4bz61bcr6pqzj88j75311kjiphnl0"; depends=[doParallel dplyr ensembldb foreach ggplot2 igraph iterators magrittr Matrix Rcpp readr rlang STRINGdb stringr tibble tidyr withr]; }; + crossurr = derive2 { name="crossurr"; version="1.1.1"; sha256="1g4nr9x93ykq6qy5236vydkcbjyfzdz81kwgjv7mph3m0b862rdw"; depends=[dplyr gbm glmnet glue pbapply purrr ranger RCAL rlang SIS SuperLearner tibble tidyr]; }; crossval = derive2 { name="crossval"; version="1.0.5"; sha256="0rvfglnd75aa2ib8v6ibv8ywyh8v4m98ybhgc9h7a2qhk825a2w9"; depends=[]; }; crossvalidationCP = derive2 { name="crossvalidationCP"; version="1.1"; sha256="0cmny8sjz4ampvi1jc2h4dh3x930vnwv8png6xygs2vb6p19f2ph"; depends=[changepoint fpopw wbs]; }; crosswalkr = derive2 { name="crosswalkr"; version="0.2.6"; sha256="1rxd6vy7vdrawmg7zkydl1f2wwklnzgh9dsnxbg966xrr3l9x1n9"; depends=[haven labelled readr readxl tibble]; }; crossword_r = derive2 { name="crossword.r"; version="0.3.6"; sha256="1s31613s4qxxspka9bhgq3rq8xraf48mwfv6phvz6v06gijh64lr"; depends=[dplyr jsonlite magrittr R6 r6extended stringr]; }; crov = derive2 { name="crov"; version="0.3.0"; sha256="1vnhnw6rw8qyhahy6d67cq5m9sxr6yic21qi16vic1q5115fwx01"; depends=[gtools VGAM]; }; crplyr = derive2 { name="crplyr"; version="0.4.0"; sha256="0l0vp2h4j2i5jb9wgdaqaixi9xvhb5n35zn8mdc7hyw13hjr8wa5"; depends=[crunch dplyr ggplot2 httptest lazyeval lifecycle purrr rlang scales stringr tibble tidyselect viridisLite]; }; - crqa = derive2 { name="crqa"; version="2.0.5"; sha256="1nnnzixkv7hxdrhwdxa2ffp139cdzm4njdprh68fl6gv92ssqr6h"; depends=[gplots Matrix plot3D pracma rdist tseriesChaos]; }; + crqa = derive2 { name="crqa"; version="2.0.6"; sha256="117sxxil4yzqss7b8d5r7y2grpc6nzcli9mrjaarsk10k95c4bwp"; depends=[dplyr ggplot2 gplots Matrix pracma rdist tseriesChaos]; }; crrSC = derive2 { name="crrSC"; version="1.1.2"; sha256="0n63k1v35wvbf565msr3fczi9hjd20bqh8b4iyvzp310d8z8b3g8"; depends=[survival]; }; crrcbcv = derive2 { name="crrcbcv"; version="1.0"; sha256="1rbmhnr7n99i0277d47i62ww6896z1g20v6vr558zmx3gvrs0b6k"; depends=[abind crrSC pracma survival]; }; crrstep = derive2 { name="crrstep"; version="2023.1.1"; sha256="0x4fvsvcxb529c7vp5fh6vp7l0sj1wszpqzbrk1da7kmf5454ki6"; depends=[cmprsk]; }; @@ -8418,16 +8573,17 @@ in with self; { crso = derive2 { name="crso"; version="0.1.1"; sha256="1r10vz8z5y52a5v5phw22fhqwv9p7g66xfsx0906bcx74dn3f2b3"; depends=[foreach]; }; crsra = derive2 { name="crsra"; version="0.2.3"; sha256="1rkqm88zmvp9gw442cby6qpvfw4pfw65wz0gyl2h37w87c3wwvrw"; depends=[digest dplyr knitr purrr rcorpora readr tibble tidytext]; }; crsuggest = derive2 { name="crsuggest"; version="0.4"; sha256="044llamxlrva5va39yzpvsmdjqn56ij7jjll73mmjg7ka0rqc5dj"; depends=[dplyr mapview purrr sf units]; }; - crul = derive2 { name="crul"; version="1.4.0"; sha256="18n9ga0ah628k83qin75ys0wipc9dgc25xnafcj400jp85g42l4f"; depends=[curl httpcode jsonlite mime R6 urltools]; }; + crul = derive2 { name="crul"; version="1.4.2"; sha256="0is164bbdk5zy1gxrliiqzlmj47nvzsjym05ijzzs3zkj7qpfp20"; depends=[curl httpcode jsonlite mime R6 urltools]; }; crunch = derive2 { name="crunch"; version="1.30.4"; sha256="0wbj4w50mh0l2wmvl1wzii41n0jp6pkqawwj36k0g66wjgxq07yq"; depends=[abind crayon curl httpcache httr jsonlite]; }; crunchy = derive2 { name="crunchy"; version="0.3.3"; sha256="15w72kmizsxkj1wx3nqny6329m2041mxyzi4nxh8l3hfmaisb4qm"; depends=[crunch httpcache miniUI rstudioapi shiny]; }; cruts = derive2 { name="cruts"; version="1.1"; sha256="1ih6h9qk4yflzars00d61smjqj7s4bfvc2ikp6vlki9f6k012xcx"; depends=[lubridate ncdf4 raster sp stringr]; }; crwbmetareg = derive2 { name="crwbmetareg"; version="1.0"; sha256="0faksz2hp1ya4j9hlpc091b1mgwz6396fc15f4f20fixcidv1jg8"; depends=[lmtest Rfast2 sandwich]; }; cry = derive2 { name="cry"; version="0.5.1"; sha256="0n1yyjkqj0kqs53g27chl7lhk07f7aj81jwyvaxfmfkp03xzjj0d"; depends=[ggplot2 zoo]; }; - crypto2 = derive2 { name="crypto2"; version="1.4.6"; sha256="0jpnks935n18yk1936643m01wj2b8hy19limnkpwny6qlyjrlzy2"; depends=[cli dplyr jsonlite lubridate plyr progress purrr tibble tidyr]; }; - cryptoQuotes = derive2 { name="cryptoQuotes"; version="1.3.0"; sha256="101j4abar8za1llgv7j6cn7f970nrf1qbi3g888p5xkzar8aczkv"; depends=[cli conflicted curl jsonlite lifecycle paletteer plotly rlang TTR xts zoo]; }; + crypto2 = derive2 { name="crypto2"; version="2.0.0"; sha256="0jj6ld4xy1dxc7g317dfjd46vrpbiayskcnvhmapr0rnga60c78r"; depends=[base64enc cli dplyr janitor jsonlite lubridate plyr progress purrr tibble tidyr]; }; + cryptoQuotes = derive2 { name="cryptoQuotes"; version="1.3.1"; sha256="0fyhnba1h3vf802rab96hch6gdkggz040yvfry9ya2i74xl972pi"; depends=[cli curl jsonlite lifecycle plotly TTR xts zoo]; }; cryptography = derive2 { name="cryptography"; version="1.0.0"; sha256="0dwnm37p95i1rmrc9qq7ryz1rk96n01ik3xif1f94vz5dlm4kxd7"; depends=[DescTools]; }; - cryptotrackr = derive2 { name="cryptotrackr"; version="1.2.0"; sha256="0y2fd2v23vc06g8wfs2h4v5b2z0599wjz5ws4yhw3kfq82969fn8"; depends=[digest httr jsonlite openssl stringi]; }; + cryptorng = derive2 { name="cryptorng"; version="0.1.4"; sha256="0c6lxms7kcgzw1dssx0l0ld0kb8jdclq8rv8j327nf45wjsll6p3"; depends=[]; }; + cryptotrackr = derive2 { name="cryptotrackr"; version="1.3.3"; sha256="0lgz0z0qrbqrvf4hg3dk9rm6i9fxi7pvijsf3ic1f5i6fyf9c0xz"; depends=[digest httr jsonlite openssl stringi]; }; cryptoverse = derive2 { name="cryptoverse"; version="0.1.0"; sha256="169afkvinngwhrxi50a4r07lhgb6x9dxjbi3bj0gc7iyxa8cl9c5"; depends=[]; }; cryptowatchR = derive2 { name="cryptowatchR"; version="0.2.0"; sha256="0lf94l5klkx1j1fgaq2qjqr2y8ckm5raa3a508x72ph45v10pfyq"; depends=[httr jsonlite lubridate]; }; cryst = derive2 { name="cryst"; version="0.1.0"; sha256="04da19dy3mkngd3ma44cd8cdkb5acjy9lbhfipa9flp339j1pp57"; depends=[flux pracma]; }; @@ -8435,12 +8591,12 @@ in with self; { csalert = derive2 { name="csalert"; version="2023.6.17"; sha256="004rsqf912f9ladp9kvx26fhmkna61cxlgjfzmlxzirm1h2iw1vs"; depends=[cstidy cstime data_table ggplot2 glm2 magrittr stringr]; }; csampling = derive2 { name="csampling"; version="1.2-2.1"; sha256="0kqx7j96yafsqi9cz551fqpwkbcabxl8zpwa2jms862z41xbgsv3"; depends=[marg statmod survival]; }; csci = derive2 { name="csci"; version="0.9.3"; sha256="00s1gx5h141w1vjw8j3k7bn71c4dy80m6wakd1c1z7rmx1jbfp6m"; depends=[exactci]; }; - csdata = derive2 { name="csdata"; version="2024.1.17"; sha256="0y1jjrw7z2ycs6njq56nny7dxjddk44cc1hyliv1zbs7rhjam5iv"; depends=[data_table]; }; + csdata = derive2 { name="csdata"; version="2024.4.26"; sha256="03yi9hnsr8nl4kg9q2dpmngym4xv3kscc6kri71hv3wzk60y811r"; depends=[data_table]; }; cshapes = derive2 { name="cshapes"; version="2.0"; sha256="0c3q85whvp28zlm4k1570kwc5qvl2fmaszx9dpmfcdqv6m19f9ks"; depends=[rmapshaper sf sp]; }; csmaps = derive2 { name="csmaps"; version="2023.5.22"; sha256="02w3g6qc928fbic462nn22s6fcqxr4v9hhhrv632azcc2x83k100"; depends=[data_table]; }; csmpv = derive2 { name="csmpv"; version="1.0.3"; sha256="13b7i4ri0a3cjnhn14m72rff4gxxda556h38gjwp900mnjaqrwbj"; depends=[forestmodel ggplot2 ggpubr glmnet Hmisc Matrix rms scales survival survminer xgboost]; }; csn = derive2 { name="csn"; version="1.1.3"; sha256="102w1qh9hgz4j9lh5hnbw1z3b7p034si73q4pkk564a2mhzlksw4"; depends=[mvtnorm]; }; - csodata = derive2 { name="csodata"; version="1.4.2"; sha256="02yi96a3zhradw5kncfngav1ma3pkjn7y638wc4z7818ykxx62m6"; depends=[dplyr httr jsonlite lifecycle lubridate R_cache reshape2 rjstat sf tidyr]; }; + csodata = derive2 { name="csodata"; version="1.5.0"; sha256="11sgkf6xy3wh73yqhcjcpif9w73026rmiwm5vcgm21fg9fl4hyfk"; depends=[dplyr httr jsonlite lifecycle lubridate R_cache reshape2 rjstat sf tidyr]; }; cspec = derive2 { name="cspec"; version="0.1.2"; sha256="049vynbffxyd5zwxwyz1jv05zgq7zrx1ypzv5j62ph64gl42m13p"; depends=[]; }; cspp = derive2 { name="cspp"; version="0.3.3"; sha256="1x3swcgqffqcpw4w6dwafqh9cikd6c714lbbnzwirvqvfswnmmgw"; depends=[csppData dplyr ggcorrplot ggplot2 haven mapproj purrr readr rlang stringr tidyselect]; }; csppData = derive2 { name="csppData"; version="0.2.61"; sha256="1q9a11v512dc96lrrd03w06s8x6c1a0j4z5x8qvq48f4q7k30l1r"; depends=[]; }; @@ -8460,7 +8616,7 @@ in with self; { ctf = derive2 { name="ctf"; version="0.1.0"; sha256="1vwqfh1y2if79rkpy6b0ay50fyis7h5rlpvhgikahnmcr2q5l14m"; depends=[iotools jsonlite]; }; ctgdist = derive2 { name="ctgdist"; version="0.1.0"; sha256="1m3ryppfvd984n5xfphjqhi9i1sigl17v897mqaichj21dzaq62f"; depends=[mirt]; }; ctgt = derive2 { name="ctgt"; version="2.0.1"; sha256="0yiclmpnpzzqv1d76bk97dwq9x44l5v7rlk2dknrx8j3zj4svais"; depends=[BH Rcpp]; }; - cthist = derive2 { name="cthist"; version="2.1.6"; sha256="0dn1mghic22s04lg79v9kinxfpd40lsigkda9x6i2bv0wgvwsy06"; depends=[assertthat dplyr httr jsonlite magrittr readr rlang stringr tibble]; }; + cthist = derive2 { name="cthist"; version="2.1.9"; sha256="0gdni6jfqq4k4w5b42va0hm7fc1k8v8b3imlip6fn9kni388a2xl"; depends=[assertthat dplyr httr jsonlite magrittr purrr readr rlang stringr tibble tidyr]; }; cthreshER = derive2 { name="cthreshER"; version="1.1.0"; sha256="18b66d08dq8pvnixmm4ir4r800b37z5yillaa88l317mdilbci9s"; depends=[Matrix]; }; ctl = derive2 { name="ctl"; version="1.0.0-10"; sha256="0wzav2307w6vbj1ksrg8qqfk1l97fclfl4i9w3sj6a238s0am3dv"; depends=[MASS qtl]; }; ctmcd = derive2 { name="ctmcd"; version="1.4.4"; sha256="0w0dhxw9qdh7p59d4xkm3h5zhmvawgy9lsw84nh9vphrqrzbfghm"; depends=[coda expm numDeriv Rcpp RcppArmadillo]; }; @@ -8470,10 +8626,10 @@ in with self; { ctmva = derive2 { name="ctmva"; version="1.4.0"; sha256="0nfn6l31bsifrb1szsrig6l4023svsr81lqnq072yi6441klyf81"; depends=[fda polynom]; }; ctpm = derive2 { name="ctpm"; version="1.0.1"; sha256="1bycdh3mbimmfvv3yb50c8rwcmkbjj0jwnfiynsp2h56y3dmzc1r"; depends=[ape ClusterR ctmm slouch]; }; ctqr = derive2 { name="ctqr"; version="2.1"; sha256="050v5am4cmr6y35ygppabs32hlzpngfqy1wdpqwc76kc3m097mlr"; depends=[pch survival]; }; - ctrdata = derive2 { name="ctrdata"; version="1.17.2"; sha256="0xsi3yc08gg9h5zh9h9r2d2ixv36f6wblmkcv51h9nfmawjyd8f8"; depends=[clipr curl digest dplyr httr jqr jsonlite lubridate nodbi readr stringi tibble V8 xml2 zip]; }; + ctrdata = derive2 { name="ctrdata"; version="1.18.0"; sha256="01y4cf4cwnsaykdbakq68bfrargn9ai492jcbq023d0w9hv78r0b"; depends=[clipr curl digest dplyr httr jqr jsonlite lubridate nodbi readr stringi tibble V8 xml2 zip]; }; ctrialsgov = derive2 { name="ctrialsgov"; version="0.2.5"; sha256="0hdh1fdfaja8amf7fkvk1c6yif703132bvacq0j9pk5jr97czgpw"; depends=[DBI dplyr ggplot2 htmlwidgets lubridate Matrix plotly purrr rlang stringi tibble]; }; ctrlGene = derive2 { name="ctrlGene"; version="1.0.1"; sha256="0x7j11v7jj4k1jml6lrnjq79awhrvsm3pig1yxsd337jlfml3ra9"; depends=[psych]; }; - ctsem = derive2 { name="ctsem"; version="3.9.1"; sha256="1npdxd4z8vafjcjhy1i16r27wqmilc7b42hml21cggl9ynvh7pn7"; depends=[BH cOde data_table Deriv expm ggplot2 MASS Matrix mize mvtnorm plyr Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tibble]; }; + ctsem = derive2 { name="ctsem"; version="3.10.0"; sha256="10ip34y03jiidwcmqlvhb4sw0f0972l3pkx694whr1dlnlb57yjr"; depends=[BH cOde data_table Deriv expm ggplot2 MASS Matrix mize mvtnorm plyr Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders statmod tibble]; }; ctsemOMX = derive2 { name="ctsemOMX"; version="1.0.6"; sha256="1vr7zpxfhwzj8v54dzgk42hvjb4433y9r8al9069prkrvlv74gx8"; depends=[ctsem Matrix OpenMx plyr]; }; ctsfeatures = derive2 { name="ctsfeatures"; version="1.2.2"; sha256="0nmqx56mbmanq6y3msdkii144srgxvyl0lzwhixm719xhjii39w3"; depends=[astsa Bolstad2 ggplot2 latex2exp Rdpack tsibble]; }; ctv = derive2 { name="ctv"; version="0.9-5"; sha256="1mr37p7mdv2p8rswz9clwj25ipm16pc4a7flwg3a4bgyj1n5mz55"; depends=[]; }; @@ -8486,12 +8642,13 @@ in with self; { cubfits = derive2 { name="cubfits"; version="0.1-4"; sha256="1dg60162s77p82v8vig52yl8ar8h0pijps8kqq35v1hvp5a3ny5q"; depends=[coda foreach]; }; cubicBsplines = derive2 { name="cubicBsplines"; version="1.0.0"; sha256="1dzwadhhrxgral9x4hxyyy1fyn45pmbwv6wiwfxhivkxmd3s2xdr"; depends=[]; }; cubing = derive2 { name="cubing"; version="1.0-5"; sha256="1q23fplvklaaldicqic0zpnh301m08zb9k21l47zj47g9m9pj4bc"; depends=[rgl]; }; - cucumber = derive2 { name="cucumber"; version="1.0.0"; sha256="1898d55lky6avhxvhj0rqfbijf66p5any7hanj32yr231mgayk2r"; depends=[checkmate dplyr fs glue purrr rlang stringr testthat tibble withr]; }; + cucumber = derive2 { name="cucumber"; version="1.0.3"; sha256="1drdx59pzm8fwmp1hjliq21ba16jahlx5f0ban5qgig0xni3vz8y"; depends=[checkmate dplyr fs glue purrr rlang stringr testthat tibble withr]; }; cuda_ml = derive2 { name="cuda.ml"; version="0.3.2"; sha256="0vqmy8qs3234gllpymvnf2x4a5g9rcmn9ja8cvccksvx6bh10mgz"; depends=[ellipsis hardhat parsnip Rcpp rlang]; }; cultevo = derive2 { name="cultevo"; version="1.0.2"; sha256="0rmncp4mrdpf3izhhqn9406i36j3d3d7i8cglip04lkfbypl9jvy"; depends=[combinat Hmisc pspearman stringi]; }; cumSeg = derive2 { name="cumSeg"; version="1.3"; sha256="0n1hp0abnd6zn72fkgkj9k875vivn5kr3q76sjy6q6va7x24j6sg"; depends=[lars]; }; cumprinc = derive2 { name="cumprinc"; version="0.1"; sha256="153cjl6x6mm6dix77bv9614nrd7x7qimwkw96mgxwarfpf1172nn"; depends=[]; }; cumstats = derive2 { name="cumstats"; version="1.0"; sha256="119w751z9dg6pjyk389pbl8ab8pirf9sqndi4nxi89ix2bby4xz8"; depends=[]; }; + cumulcalib = derive2 { name="cumulcalib"; version="0.0.1"; sha256="0md2zvs0n7lrlfxh5208a69jg2wgdwd4jvivf3j50jhhwfclmsw5"; depends=[]; }; cumulocityr = derive2 { name="cumulocityr"; version="0.1.0"; sha256="0ybvh5args3s1f3nra58bnfwgrlrdpw40by68az84s90v88bbz2q"; depends=[httr jsonlite]; }; cuperdec = derive2 { name="cuperdec"; version="1.1.0"; sha256="1vvkbkb3dp38xzxxdm20n6vr8yifppn1clzzcvb2rhqk9d17cdiw"; depends=[dplyr ggplot2 magrittr readr rlang tidyr]; }; curephEM = derive2 { name="curephEM"; version="0.3.0"; sha256="0c24xasgyr9dcbnmscfc9zj3lh1ja03xnzww0qd9rd5ax7hrciks"; depends=[Matrix survival]; }; @@ -8515,13 +8672,14 @@ in with self; { cusumcharter = derive2 { name="cusumcharter"; version="0.1.0"; sha256="0ljprnn48nfl8n0zmvc547rcg4cwrfhq3zjkkimgdnf7z2d130q6"; depends=[data_table ggplot2 rlang]; }; cutoff = derive2 { name="cutoff"; version="1.3"; sha256="0anrvmlvcxah620il3fkq6ldp7hx4nwdnzcpmfc5mhlsry0lp178"; depends=[do ROCit set survival]; }; cutpointr = derive2 { name="cutpointr"; version="1.1.2"; sha256="1qxnh20hs3bh9v04ls7gwwl7lfc6bwl8c88dn8lkcdqyp3nyr01j"; depends=[dplyr foreach ggplot2 gridExtra purrr Rcpp rlang tibble tidyr tidyselect]; }; - cv = derive2 { name="cv"; version="1.1.0"; sha256="18h7ivmicjdmnp9f1m2q21qlp9qdbh139x77xqa94v9kyb5w3d96"; depends=[car doParallel foreach insight lme4 MASS nlme]; }; + cv = derive2 { name="cv"; version="2.0.0"; sha256="1jhvi0bf8r66q2kqjylg0fdnzxpsaxq1ivm82akhczivjn39wvv8"; depends=[car doParallel foreach glmmTMB gtools insight lme4 MASS nlme]; }; cvAUC = derive2 { name="cvAUC"; version="1.1.4"; sha256="1m2y50a1yapf1c74km9a4r47ds2z2bfp4wwwkqin7swv9v1s7d28"; depends=[data_table ROCR]; }; cvCovEst = derive2 { name="cvCovEst"; version="1.2.2"; sha256="148qb2995h9an2zp6rn0lvy8c6x1iiqx4cdfhzx6jdixra3593im"; depends=[assertthat coop dplyr ggplot2 ggpubr Matrix matrixStats origami purrr RColorBrewer Rdpack rlang RMTstat RSpectra stringr tibble]; }; cvGEE = derive2 { name="cvGEE"; version="0.3-0"; sha256="085qjm520l2441nakfxy851s6bfy5832b5fy54z5fp4xr1jn6snm"; depends=[]; }; cvTools = derive2 { name="cvTools"; version="0.3.3"; sha256="0vrlj0jrmy1dj5fy4cpfkls2l5a2r7c7kvfhlnibpy8cmdx1mhql"; depends=[lattice robustbase]; }; cvap = derive2 { name="cvap"; version="0.1.5"; sha256="02ixibmia4v6qdrn3rwi4qjgha920y8qp83as9acr797abahmnm8"; depends=[censable cli dplyr fs readr rlang stringr tidyr]; }; cvar = derive2 { name="cvar"; version="0.5"; sha256="066vn8flw9j0idmpi9wzvybgihdhwg3fjslx2isbrb11ldl1lwky"; depends=[gbutils Rdpack]; }; + cvasi = derive2 { name="cvasi"; version="1.1.0"; sha256="17w13b1h8nri74j5s94klwmrzjcd88llz2n84v54nc6nza77yk9g"; depends=[attempt cli deSolve dplyr furrr ggplot2 glue lemna lifecycle lubridate magrittr purrr rlang stringr tibble tidyr units]; }; cvcrand = derive2 { name="cvcrand"; version="0.1.1"; sha256="02pdhaq0mm1vijdc0hwh4vpcvk5fhwq73lhkrrg2zr6bwq8q2syz"; depends=[tableone]; }; cvequality = derive2 { name="cvequality"; version="0.2.0"; sha256="1im839vzfqylphp2vr20avnzkyl02n88fngbs63d4ik7c72d9992"; depends=[]; }; cvmaPLFAM = derive2 { name="cvmaPLFAM"; version="0.1.0"; sha256="1qmd4zbh70z1vgc6mxfr9scvqw923y9qdxjf80i826bdh7sc4wq3"; depends=[fda MASS mgcv quadprog]; }; @@ -8530,7 +8688,7 @@ in with self; { cvms = derive2 { name="cvms"; version="1.6.1"; sha256="0iwg6biy700lgn038ws0dk0qqfl7nws1nxcgkhdd4wm6ki4qb1pq"; depends=[checkmate data_table dplyr ggplot2 groupdata2 lifecycle lme4 MuMIn parameters plyr pROC purrr rearrr recipes rlang stringr tibble tidyr]; }; cvsem = derive2 { name="cvsem"; version="1.0.0"; sha256="148v8axwxfr328l709b6q1fmqnzmiw9g7589zgwha4d6lrx4ak4i"; depends=[lavaan Rdpack]; }; cvwrapr = derive2 { name="cvwrapr"; version="1.0"; sha256="17h017p76y7sjcwik48ravygmyivj6kvkhqy5s9ch0nwzzcrzvj3"; depends=[foreach survival]; }; - cwbtools = derive2 { name="cwbtools"; version="0.4.0"; sha256="1py9frp2aq3q4iq5130izbxx6k1xq7rgz1knzpxkhy8h5afx8ywc"; depends=[cli curl data_table fs httr jsonlite lifecycle pbapply R6 RcppCWB rstudioapi stringi xml2 zen4R]; }; + cwbtools = derive2 { name="cwbtools"; version="0.4.2"; sha256="1aanda6rj60rkkbkxijj4r4bx0caiyr9ifw0pg6nabv4fwfnlb4x"; depends=[cli curl data_table fs httr jsonlite lifecycle pbapply R6 RcppCWB rstudioapi stringi xml2 zen4R]; }; cwot = derive2 { name="cwot"; version="0.1.0"; sha256="1qg9aizkz40sfm65b8sxcmj1232zb3ds8gds45lv0prf8alc7az3"; depends=[mvtnorm SPAtest]; }; cxhull = derive2 { name="cxhull"; version="0.7.4"; sha256="0jxr1fz7cyarcq50jkkc2f3f1zwmbljpdpl56hfcilb43z2rkzkj"; depends=[data_table rgl Rvcg]; }; cxr = derive2 { name="cxr"; version="1.1.1"; sha256="197xbphvnhg05dwcs0p7iwg6j6bi223cxxqfvibx7yp2bnfsllm2"; depends=[Matrix mvtnorm optimx]; }; @@ -8549,14 +8707,14 @@ in with self; { cytofan = derive2 { name="cytofan"; version="0.1.0"; sha256="0gqs98mnwiawnyfb9hs5nlin8d1fj64bszn4b40gs8ajyh36r9pp"; depends=[ggplot2 RColorBrewer]; }; cytometree = derive2 { name="cytometree"; version="2.0.2"; sha256="18g7av73lmnyga1kk24bf8jy599zn9n6qhr13mxsqgi0zdinicfa"; depends=[cowplot ggplot2 GoFKernel igraph mclust Rcpp RcppArmadillo]; }; cytominer = derive2 { name="cytominer"; version="0.2.2"; sha256="1n9yimjhdziv1vzjyni6ssi38nxcnfr5jpmzgxcn6vysffh5s9pz"; depends=[caret doParallel dplyr foreach futile_logger magrittr Matrix purrr rlang tibble tidyr]; }; - czechrates = derive2 { name="czechrates"; version="0.2.4"; sha256="0mv9adynqyn8x3ppwf4dkl8ii9jy4l7qk7v6bz7bxl5qsd6a5imn"; depends=[curl dplyr httr magrittr readr tibble tidyr]; }; - czso = derive2 { name="czso"; version="0.3.10"; sha256="0vkckjnv8nkv794dq9kz1lg8qj614gma3blasz4288xxbg9cq6p5"; depends=[cli curl dplyr httr jsonlite lifecycle magrittr readr rlang stringi tibble]; }; + czechrates = derive2 { name="czechrates"; version="0.2.5"; sha256="176bhlgdyl8fv1nbfgh2vc7h65d8pib2c162dzcdy1zlm4hccc84"; depends=[curl dplyr httr magrittr readr tibble tidyr]; }; + czso = derive2 { name="czso"; version="0.3.12"; sha256="0zg1sqka0m1cc5cwdkb0b12fb27mj4skz2vbvn6xqjbww1yjxrpd"; depends=[cli curl dplyr httr jsonlite lifecycle magrittr readr rlang stringi tibble]; }; d3Network = derive2 { name="d3Network"; version="0.5.2.1"; sha256="1gh979z9wksyxxxdzlfzibn0ysvf6h1ij7vwpd55fvbwr308syaw"; depends=[plyr rjson whisker]; }; d3Tree = derive2 { name="d3Tree"; version="0.3.0"; sha256="13qvwmv5nfiv0c3545f2jlhmvgavqnc0jclvm5razjs4hv4kai7i"; depends=[dplyr htmlwidgets tibble tidyselect]; }; d3plus = derive2 { name="d3plus"; version="0.1.0"; sha256="0kadz83pals03n0v3zqhmhf6visigk52yn58xckhb57fid4xzj5w"; depends=[htmlwidgets magrittr]; }; d3po = derive2 { name="d3po"; version="0.5.5"; sha256="1fyk0152x9zsbf7qm02wixrk9fldl0jlrg33fnbx06jjg1s431r7"; depends=[assertthat dplyr htmlwidgets magrittr purrr rlang]; }; d3r = derive2 { name="d3r"; version="1.1.0"; sha256="1dcm53y3jpyswr6y368xhdnn1nkchixf4wkxnsb2mk9lzccb44y4"; depends=[dplyr htmltools tidyr]; }; - d4storagehub4R = derive2 { name="d4storagehub4R"; version="0.4-3"; sha256="1a6clkld20vmvacdwr4rir34mj4fm5fdh687b2whds6y0rj7wgb3"; depends=[httr jsonlite keyring R6 XML xml2]; }; + d4storagehub4R = derive2 { name="d4storagehub4R"; version="0.4-4"; sha256="0ixv8wypcvcrn3xig8sg54mizsll4v2665l8hqd1q15d0ln2p789"; depends=[httr jsonlite keyring R6 XML xml2]; }; dBlockmodeling = derive2 { name="dBlockmodeling"; version="0.2.3"; sha256="18y6pkp273q15nkgqywzknsq1mnbiaw8jlzsaa76zadxf7xhsxls"; depends=[]; }; dCUR = derive2 { name="dCUR"; version="1.0.1"; sha256="1blrxgf911b1y2pcp3hsv6cigpnclscjadlf5656kldblzj5w5m1"; depends=[dplyr ggplot2 magrittr MASS mclust ppcor Rdpack]; }; dChipIO = derive2 { name="dChipIO"; version="0.1.5"; sha256="1xrafw5h071d8rfqaic3gifc80jpiddjz5x6l2cr8kgjvph60gqh"; depends=[]; }; @@ -8578,7 +8736,7 @@ in with self; { dadjoke = derive2 { name="dadjoke"; version="1.0"; sha256="118pacwc2qb3c5zbhr71zf4zj1ab2g4rs5h6bvrscjyd7a71jc3f"; depends=[]; }; dadjokeapi = derive2 { name="dadjokeapi"; version="1.0.2"; sha256="143xs3nkf6ynr83z5gggz318nvpnsbfmskl1ipavlzrqk785dlac"; depends=[beepr curl dplyr httr png]; }; dados = derive2 { name="dados"; version="0.1.0"; sha256="1jdna8s10qz50zrsrm36y1jx489sznd86akx2lwdmriiiz3abn65"; depends=[AmesHousing babynames dplyr forcats fueleconomy gapminder ggplot2 Lahman nasaweather nycflights13 palmerpenguins pixarfilms rlang tibble tidyr yaml]; }; - dae = derive2 { name="dae"; version="3.2.21"; sha256="0j47d4r4mpkfaz29h7iiijmzi7fj7nysg8pd9c79h160h1lww9yx"; depends=[ggplot2 ggpubr plyr]; }; + dae = derive2 { name="dae"; version="3.2.28"; sha256="13a3j3d8qm1phkp4x0pdqa6p36j6xlakhmkrqcb9x0bpcfzbwfyl"; depends=[ggplot2 ggpubr plyr tryCatchLog]; }; daewr = derive2 { name="daewr"; version="1.2-11"; sha256="0hh7z0sdynrw4746hqvyra4dsqa9p1j8bip7b8asyvdpirxhvh23"; depends=[lattice stringi]; }; daff = derive2 { name="daff"; version="1.1.1"; sha256="0zbh3p7d2r04j9kzfk32j2zw9f745dk7yl2dx8lflrm0zidwbxc4"; depends=[jsonlite V8]; }; dafishr = derive2 { name="dafishr"; version="1.0.0"; sha256="1n6b1r1awwxvdhn4znwp1p4jp3gvrjz017darjagx4cix0iisw1p"; depends=[dplyr fst ggplot2 lubridate magrittr mixtools readr readxl rlang sf stringr tibble tidyr tidyselect vroom]; }; @@ -8590,10 +8748,10 @@ in with self; { daiR = derive2 { name="daiR"; version="1.0.0"; sha256="110car64pgpg71dcqnbkj91md0xwikpmd6iy90nj84nglycc5v00"; depends=[base64enc beepr cli data_table fs gargle glue googleCloudStorageR httr jsonlite lifecycle magick pdftools purrr readtext stringr xml2]; }; dail = derive2 { name="dail"; version="1.5.2"; sha256="0a82ch0l7ci9vjrwyy38qhw8zrp9d4h2bmk963llm9aqf4j7lkhf"; depends=[deflateBR dplyr janitor lubridate magrittr RCurl readr stopwords stringr tidytext]; }; daiquiri = derive2 { name="daiquiri"; version="1.1.1"; sha256="05057i8xvkzyd8h1ppw7qip1d4yjgzimmb5chbdw72mwwgbrwrfy"; depends=[cowplot data_table ggplot2 reactable readr rmarkdown scales xfun]; }; - daltoolbox = derive2 { name="daltoolbox"; version="1.0.727"; sha256="0ycbbqcdkk9yhwrrln5xh4j5xfsga4hcn0jc7fgczpjdgv07g8w8"; depends=[caret class cluster dbscan dplyr e1071 elmNNRcpp FNN forecast ggplot2 MLmetrics nnet randomForest reshape reticulate tree]; }; + daltoolbox = derive2 { name="daltoolbox"; version="1.0.767"; sha256="02rhbcgjwlx45y0641yjlamzgl2swm60hmvwppr4nk24hb0hjczs"; depends=[caret class cluster dbscan dplyr e1071 elmNNRcpp FNN forecast ggplot2 MLmetrics nnet randomForest reshape reticulate tree]; }; + daltoolboxdp = derive2 { name="daltoolboxdp"; version="1.0.767"; sha256="1l34wb2vl9wmf0vrhis29w4hz1m9jx9qdfi494rfnwals054j3ah"; depends=[daltoolbox doBy FSelector glmnet leaps smotefamily]; }; dam = derive2 { name="dam"; version="0.0.1"; sha256="1b0fi3l8jxgpr9fwvi03giq7wm39msbh0c82ffgkh54a3bbf5blc"; depends=[]; }; damAOI = derive2 { name="damAOI"; version="0.0"; sha256="1vfc1nwzr76djmwriln9dh8hj6iq5ji9vxfnpzydl34niqckscf0"; depends=[dplyr FNN leaflet magrittr sf shiny shinydashboard smoothr terra tibble tidyr units]; }; - dampack = derive2 { name="dampack"; version="1.0.1"; sha256="0mh3x0xgcipbd9341x3sfapysrd9m8aaakc1f53vwjj31c8vayqc"; depends=[dplyr ellipse ggplot2 ggrepel mgcv reshape2 scales stringr triangle truncnorm]; }; damr = derive2 { name="damr"; version="0.3.7"; sha256="12vr630m2az8xb8wndk8cyh7r8mwg3lvr7i3fcgqqxcq9rsgqm4r"; depends=[behavr data_table readr]; }; dams = derive2 { name="dams"; version="0.3.0"; sha256="1jlx1b4cir1vwq75jnmk0pc6j95syfpi0hlnkx82g7pwfxwrdrib"; depends=[crul fauxpas janitor readxl]; }; dang = derive2 { name="dang"; version="0.0.16"; sha256="1h0j2pxwp8dnaw2vrclj069xmd6adwah8ld4vmmh3zm7kwflvcx8"; depends=[tidyCpp]; }; @@ -8605,14 +8763,14 @@ in with self; { dartR = derive2 { name="dartR"; version="2.9.7"; sha256="1wwm2gq743l90jsa1hsgxknqxqp0ga8vf3xv652m3ifpyrkp93vx"; depends=[adegenet ape crayon dartR_data data_table dplyr fields foreach ggplot2 gridExtra MASS patchwork plyr PopGenReport raster reshape2 shiny SNPRelate sp StAMPP stringr tidyr vegan]; }; dartR_base = derive2 { name="dartR.base"; version="0.65"; sha256="1887ksyszlp65i4z6zhh6j1pihfkkimiwrv6bqav5z7gmw2i0pi7"; depends=[adegenet ape crayon dartR_data data_table dplyr foreach ggplot2 gridExtra MASS patchwork plyr reshape2 SNPRelate StAMPP stringr tidyr]; }; dartR_captive = derive2 { name="dartR.captive"; version="0.75"; sha256="1n6qhn87111ydznmy85lj7sbxkkak4nwiq1kyky3p43x9679b2p9"; depends=[adegenet crayon dartR_base dartR_data ggplot2 patchwork stringr]; }; - dartR_data = derive2 { name="dartR.data"; version="1.0.2"; sha256="0gi6hgvfvh1hp60fvmij2r4fgv1qigs2biw2hw05rbl55xv93ni5"; depends=[adegenet]; }; + dartR_data = derive2 { name="dartR.data"; version="1.0.8"; sha256="179nqwnkkkjw3c2a7z3gw4d37122fnidnxrxi05sh62aqmjlw5ip"; depends=[adegenet crayon]; }; dartR_popgen = derive2 { name="dartR.popgen"; version="0.32"; sha256="1sr9dd6nyspcv0lvj42qa1wpnichjxq1nqp6rl0i6f6jz00fm5mv"; depends=[adegenet crayon dartR_base dartR_data data_table dplyr ggplot2 MASS patchwork stringr]; }; dartR_sim = derive2 { name="dartR.sim"; version="0.70"; sha256="02l18hvdd1hr9l15frvaw7nikjmr7iyq3wvg5xz8drma4v9r9lwb"; depends=[adegenet dartR_base dartR_data data_table fields ggplot2 hierfstat Rcpp reshape2 shiny shinyBS shinyjs shinythemes shinyWidgets stringi stringr]; }; dartR_spatial = derive2 { name="dartR.spatial"; version="0.78"; sha256="1fjajinsc2ikvhz4igjyldvfd5skdqhnay5209dzx4xjpnkik5vv"; depends=[adegenet crayon dartR_base dartR_data data_table ggplot2 MASS raster sp StAMPP tidyr vegan]; }; - dartRverse = derive2 { name="dartRverse"; version="0.51"; sha256="1j5fgr5priyh9w4ysnx8104yvhq4kysp0i07phqjn2yyj0pk8a15"; depends=[cli dartR_base dartR_data rlang]; }; + dartRverse = derive2 { name="dartRverse"; version="1.0.2"; sha256="0z6nx5j1jgyzmcxdmdbxdhigq7qc3mka0fq6ghyfqaa3089lc823"; depends=[cli devtools rlang]; }; dashboardthemes = derive2 { name="dashboardthemes"; version="1.1.6"; sha256="0yki4gmklrkhs6ldznabdr04smw3a112ask313z1h93dnvabr06c"; depends=[htmltools]; }; dat = derive2 { name="dat"; version="0.5.0"; sha256="1d3q4bang6pm06rfzh6h947xy3wwqn3l6ri0h4hzklg5pzwpsajd"; depends=[aoos data_table Formula magrittr progress]; }; - data_table = derive2 { name="data.table"; version="1.15.2"; sha256="04pfcm3pyl997rpyj5zdmbhi4ndaai81vfgv4whjp8rhqzjk7i6j"; depends=[]; }; + data_table = derive2 { name="data.table"; version="1.15.4"; sha256="0lyb82kl2bn70l9ag5xdr8q7rh4majbimygaynmfqnbdjkznb05b"; depends=[]; }; data_tree = derive2 { name="data.tree"; version="1.1.0"; sha256="0qxd1g159phc6f18iddjljdg96sh09w63xqawjwbwyhg4blm9ddh"; depends=[R6 stringi]; }; data_validator = derive2 { name="data.validator"; version="0.2.1"; sha256="118crpyyp2szj0l3rsqmzi1cpcv45lwlvczp25f28z1lgcx6mgcx"; depends=[assertr dplyr htmltools htmlwidgets knitr purrr R6 rlang rmarkdown shiny_semantic tibble tidyr]; }; data360r = derive2 { name="data360r"; version="1.0.9"; sha256="15934ixmzw3iyqazhlz6s5cimmasf062fc8al0wdyij1f4cjcgny"; depends=[data_table jsonlite reshape2]; }; @@ -8624,16 +8782,17 @@ in with self; { dataReporter = derive2 { name="dataReporter"; version="1.0.2"; sha256="1rjm6j1s229j1j9yb5y1sdi03x22qzrkmhc09k4xdmwmwmpi3s58"; depends=[ggplot2 gridExtra haven htmltools magrittr pander rmarkdown robustbase stringi whoami]; }; dataRetrieval = derive2 { name="dataRetrieval"; version="2.7.15"; sha256="0h5k68541nqg03hmfzfg4bqwjggl95yk9s2hlmfjxx3gxg4g5719"; depends=[curl httr jsonlite lubridate readr xml2]; }; dataSDA = derive2 { name="dataSDA"; version="0.1.0"; sha256="0nf7ssk8srpmq0b2bqzm6kilj3m3dhdk7fz35vhzzkj4d2wn9czr"; depends=[magrittr tidyr]; }; - databraryr = derive2 { name="databraryr"; version="0.6.2"; sha256="0zlzsax460njv9370rw1y94vfhs22hmviz0c12bsab814i8vb3mm"; depends=[assertthat dplyr getPass httr httr2 jsonlite keyring lifecycle magick magrittr plyr purrr rvest stringr tibble xfun]; }; + databraryr = derive2 { name="databraryr"; version="0.6.4"; sha256="0ycpkdz3ln9a1yvcl142agk7cfzz0qh8yzx6y7ihy7zkl646m99m"; depends=[assertthat dplyr getPass httr httr2 jsonlite keyring lifecycle magick magrittr plyr purrr rvest stringr tibble xfun]; }; dataclass = derive2 { name="dataclass"; version="0.3.0"; sha256="1byjxwk3jlm3jaa8q2ppr5i0y98hriky7rrff9gb8nk6yvv9jgmq"; depends=[cli dplyr glue magrittr purrr rlang tibble]; }; datacleanr = derive2 { name="datacleanr"; version="1.0.3"; sha256="0mrfqm3lgb6sl2j35sfd00gb5121j9wmlff8k0vczr3sgmqz4dg8"; depends=[bslib clipr dplyr DT formatR fs glue htmltools htmlwidgets lubridate magrittr plotly purrr RColorBrewer rlang rstudioapi shiny shinyFiles shinyWidgets summarytools]; }; datacutr = derive2 { name="datacutr"; version="0.1.0"; sha256="1qgmc2r1g5zlvfq84qrmmfp6dv3458zhv741aa5wf1nkw2sv656y"; depends=[admiraldev assertthat dplyr lubridate magrittr purrr rlang stringr tibble]; }; datadictionary = derive2 { name="datadictionary"; version="1.0.0"; sha256="102ll25mi4ac1zkvvirk7k11hqpf9q9h2if1rkz93zlfms843hp7"; depends=[chron data_table dplyr haven labelled lubridate magrittr openxlsx tibble tidyr tidyselect]; }; datadogr = derive2 { name="datadogr"; version="0.1.2"; sha256="10zbxb9gkymw78ras9y4wrifz7cxh3y630yzjcf9ds2p557vcjzp"; depends=[anytime dplyr glue httr lubridate purrr stringr tibble tidyr]; }; + datadriftR = derive2 { name="datadriftR"; version="0.0.1"; sha256="0ggakc73kyhnw60wvlb4pa7j6fvxcl98bbii45z2rrggbcgdjrfr"; depends=[R6]; }; dataframeexplorer = derive2 { name="dataframeexplorer"; version="1.0.2"; sha256="0g5ajvd81k5pamvn204rxaiw92k20qqffnia1g6z89lp73spxs0s"; depends=[data_table dplyr magrittr openxlsx plyr stringr tibble tidyr]; }; datafsm = derive2 { name="datafsm"; version="0.2.4"; sha256="0klhkbwpaqxk2mnxha8b03mpgfxk107ff9d2nx6cky59il3c1825"; depends=[caret GA Rcpp]; }; datagovsgR = derive2 { name="datagovsgR"; version="1.0.0"; sha256="1vi3pql1k563ggvqr0d673z2aspvqi1w384lslinnsq85cwcfcly"; depends=[data_table dplyr httr purrr stringr]; }; - datamods = derive2 { name="datamods"; version="1.4.5"; sha256="1qirnkzrskrf95vdj9pbnj8f04b2aiclhk4b0wz6bx2bmm02mg7n"; depends=[data_table htmltools htmlwidgets phosphoricons reactable readxl rio rlang shiny shinybusy shinyWidgets tibble writexl]; }; + datamods = derive2 { name="datamods"; version="1.5.1"; sha256="0bxfa001j9vib0sj9d32qyzrqjvdzm5zxcpg1mm3jw31546jl46p"; depends=[classInt data_table htmltools phosphoricons reactable readxl rio rlang shiny shinybusy shinyWidgets tibble toastui writexl]; }; datana = derive2 { name="datana"; version="1.0.3"; sha256="0vci2nhavqrpah4n5gr0rhihlp9qa41mfgg8w2k7fdak65hdz3hq"; depends=[ggplot2 lattice]; }; datanugget = derive2 { name="datanugget"; version="1.2.4"; sha256="0r75vc6fzafv2kwq228w9iw0ryhwmly839dhcgf8bqgxyzd9gs16"; depends=[doSNOW foreach Rfast]; }; dataonderivatives = derive2 { name="dataonderivatives"; version="0.4.0"; sha256="0bp1ynarz70c2clsz60dqfd4vmgm3251jv6821db5n7fffdrr7qa"; depends=[httr2 readr tibble vetr]; }; @@ -8641,7 +8800,7 @@ in with self; { datapack = derive2 { name="datapack"; version="1.4.1"; sha256="14vlcgk5sckzkc15cjvrbs113y65rqlwm1az7nsvnsqfx4x76jb1"; depends=[digest fs redland uuid XML zip]; }; datapasta = derive2 { name="datapasta"; version="3.1.0"; sha256="0sqv29iv2rv50rbw1601rn8p7gv7rsw00djhl7h1znr0igzi5b82"; depends=[clipr readr rstudioapi]; }; dataprep = derive2 { name="dataprep"; version="0.1.5"; sha256="1v48ry6xk0qg73j6js6m6fqd1bdhjv500bndb60zzl2qifrjfk2a"; depends=[data_table doParallel dplyr foreach ggplot2 reshape2 scales zoo]; }; - dataquieR = derive2 { name="dataquieR"; version="2.0.1"; sha256="0paxrc9fi4p93mp4rr0ip0kn9gsm0hmplsl8icwxx980dmhxxyz9"; depends=[dplyr emmeans ggplot2 lme4 lubridate MASS MultinomialCI parallelMap patchwork qmrparser R_devices reshape rio rlang robustbase scales]; }; + dataquieR = derive2 { name="dataquieR"; version="2.1.0"; sha256="1y8s6igz7ckvqamz26lrks62fnh51w1gz18gv7saxkmiwcacfjh4"; depends=[dplyr emmeans ggplot2 lifecycle lme4 lubridate MASS MultinomialCI parallelMap patchwork qmrparser R_devices readr rio rlang robustbase scales units withr]; }; datardis = derive2 { name="datardis"; version="0.0.4"; sha256="0zcgl4jyz0xphliwjg8x5hqg9avflk0s5mgxd7gl52pxrki4mak3"; depends=[dplyr]; }; dataresqc = derive2 { name="dataresqc"; version="1.1.1"; sha256="1a4izp25bxvgq3l4m7njy13d3fl6xn8y7v2v18raqk5g8kl8ca2y"; depends=[]; }; datarium = derive2 { name="datarium"; version="0.1.0"; sha256="1v98yxsxhfqlalz5qy3x5axb7fy067vf3y0qg7ngixphmy9qybym"; depends=[]; }; @@ -8655,17 +8814,17 @@ in with self; { dataspice = derive2 { name="dataspice"; version="1.1.0"; sha256="1pnmb7kdx9wdvi2873rw1a7hc7spsvx4lfvfhfcqwgll46j0f1wm"; depends=[dplyr EML fs ggplot2 jsonlite magrittr purrr readr rhandsontable shiny stringr tibble tidyr whisker]; }; datastepr = derive2 { name="datastepr"; version="0.0.2"; sha256="039yggdj8jdici7hwmkjwgix45lvwjl7rw5h2rfzsm9xaq6vw1z2"; depends=[dplyr lazyeval magrittr R6 tibble]; }; dataverifyr = derive2 { name="dataverifyr"; version="0.1.8"; sha256="1jy8hdzld8yhz632rdk3j592szp7xn3qbs2h3g0gax3p33cpcasj"; depends=[yaml]; }; - dataverse = derive2 { name="dataverse"; version="0.3.13"; sha256="1fzbllznvq5mls3hm1pirlkgjlsiwvdkkcqci2jymh376l2gx35g"; depends=[checkmate httr jsonlite readr xml2]; }; - datawizard = derive2 { name="datawizard"; version="0.9.1"; sha256="0d01akddrbvdf16rvws3fh4pjl64myxn7is4qv2szm7hp6wjb4p5"; depends=[insight]; }; + dataverse = derive2 { name="dataverse"; version="0.3.14"; sha256="0hb7d4rgwjzxg5ixx6jf3vg6s6r2aynw34lkw688f5jd9ysc706l"; depends=[checkmate httr jsonlite readr xml2]; }; + datawizard = derive2 { name="datawizard"; version="0.11.0"; sha256="0cghk6flxxsz079sw8l4aw1h4girg7mwl61237a7ymmhvny70d4k"; depends=[insight]; }; datazoom_amazonia = derive2 { name="datazoom.amazonia"; version="1.1.0"; sha256="1c2l42rwj67lr2910i1wdb04sqqwkdv5ycav6bz3snw349j8mycm"; depends=[data_table dplyr Hmisc janitor magrittr purrr Rcpp readr readxl sf sidrar stringi stringr tibble tidyr XML]; }; date = derive2 { name="date"; version="1.2-42"; sha256="0x6b9dk7llvmcf2bzgdk8g1a28as0l1xxx2xn2fwyw801ab3z4as"; depends=[]; }; - dateback = derive2 { name="dateback"; version="1.0.3"; sha256="0ja453w7nlb051sdl9rm2kdk40lz34zrixy3bmmmhjvcmcls9kxs"; depends=[]; }; + dateback = derive2 { name="dateback"; version="1.0.5"; sha256="0kg066kx3r0kpj10p28xbidjri6x9g7br7bjs8qq6027a3klfxfv"; depends=[]; }; datefixR = derive2 { name="datefixR"; version="1.6.1"; sha256="1xmrx8djxc05r9yvgfgkvmp19m2pj6n2g1r4siikwkzlssh2x8fz"; depends=[lifecycle Rcpp rlang stringr]; }; datelife = derive2 { name="datelife"; version="0.6.8"; sha256="154nmpvslnizd03jaxbhkc7vjzjx7j18zlwmrpx2qidqk424k1i9"; depends=[abind ape BiocManager bold cluster compare curl data_table geiger httr ips knitcitations paleotree phangorn phylobase phylocomr phytools plyr rotl stringr taxize treebase]; }; daterangepicker = derive2 { name="daterangepicker"; version="0.2.0"; sha256="03y8r1n31ipapfbbg12myrnqd961ra3fb6r4mjxqfkppxcj9c6mi"; depends=[htmltools jsonify shiny]; }; datetime = derive2 { name="datetime"; version="0.1.4"; sha256="0nn1yxknsn3crmwbkws5kvfjhd65dw0fkfbg67gba0dyaqp1jg37"; depends=[]; }; datetimeoffset = derive2 { name="datetimeoffset"; version="0.3.1"; sha256="11xxxfv3g8jf16cwpxjycrymx9baf8gkpd98x69djhbnrn3si0vn"; depends=[clock purrr vctrs]; }; - datetimeutils = derive2 { name="datetimeutils"; version="0.6-3"; sha256="0k75r9bvh8wb45mrqk9vbyig8xk623g9cnrk7s6zbcx85ymxmmk6"; depends=[]; }; + datetimeutils = derive2 { name="datetimeutils"; version="0.6-4"; sha256="0k8zgr3dpba967p12fygrbrcgnbm51ghhnh7cb1w1gd7jqc42nhk"; depends=[]; }; datetoiso = derive2 { name="datetoiso"; version="0.2.0"; sha256="1fg5r7ibdgbk1vbhbv6a2p4acd1mhsyyvrjr79cy37gmn1ka72i3"; depends=[lubridate stringr]; }; dateutils = derive2 { name="dateutils"; version="0.1.5"; sha256="03xch5wcvv15fy9x70smrki6374lddhf0sfp0inymdsq4g8wp4bc"; depends=[data_table Rcpp RcppArmadillo seasonal]; }; datoramar = derive2 { name="datoramar"; version="0.1.0"; sha256="0zq6vhq6dmsyagmqrmb85z6fy9qhwra3s3iasr3jgc4ryr009pml"; depends=[httr jsonlite tibble]; }; @@ -8681,7 +8840,7 @@ in with self; { dbMC = derive2 { name="dbMC"; version="1.0.0"; sha256="0gcgn3m10sx0naim206jkw7szl0mr7vbnkn25avvv9f8iy3y9vcv"; depends=[softImpute]; }; dbWebForms = derive2 { name="dbWebForms"; version="0.1.0"; sha256="0diz5mh4fhwrwqa7jr70vzj2jks7h2n91v2hr1mvvlbc7rzd9yki"; depends=[data_table DBI html5 stringi]; }; dbacf = derive2 { name="dbacf"; version="0.2.8"; sha256="03nrd7x2sxkyah8lpi5zawap7yhg6h2gdy0jws1jysw937l1kc50"; depends=[Matrix]; }; - dbarts = derive2 { name="dbarts"; version="0.9-26"; sha256="1l751zj413xwn6qmvvdlrbx1h9vz0bvz81dqfnsn2xv47hrbp9dy"; depends=[]; }; + dbarts = derive2 { name="dbarts"; version="0.9-28"; sha256="0f01mk39rb7afnymi9fbaikv7hbpx2jwbzp3dd87q7hr3kpb9r6j"; depends=[]; }; dbcsp = derive2 { name="dbcsp"; version="0.0.2.1"; sha256="0faq63aqj4ddlfc5dpi8g3ngqidca6czicgvkzdyg4bj87s0kism"; depends=[caret geigen ggplot2 MASS Matrix parallelDist plyr TSdist zoo]; }; dbd = derive2 { name="dbd"; version="0.0-22"; sha256="13qdm0y5dvc107xnv6663gbvmkw77150r073lp1jppf3gs8s587b"; depends=[]; }; dbflobr = derive2 { name="dbflobr"; version="0.2.2"; sha256="04gh0xfdp077f3ppf8i101q17n2r711y47qnxb9nq5ksnf37s5jp"; depends=[blob chk clisymbols crayon DBI flobr glue rlang RSQLite]; }; @@ -8692,14 +8851,14 @@ in with self; { dbmss = derive2 { name="dbmss"; version="2.9-0"; sha256="16bmaq8wd7v6vqnycr670sajcyaplkw1g5w5m2ri7ch16ccpqk6j"; depends=[cubature ggplot2 Rcpp RcppParallel reshape2 rlang spatstat_explore spatstat_geom spatstat_random spatstat_utils tibble]; }; dbnR = derive2 { name="dbnR"; version="0.7.8"; sha256="10lw8ax33l0q52pm07fi66fhm06n3yg48plgvz5cg14l98v7g7s5"; depends=[bnlearn data_table magrittr MASS R6 Rcpp]; }; dbnlearn = derive2 { name="dbnlearn"; version="0.1.0"; sha256="0kmyiad7v96mnfi24d2pn3dqmk3g82sx348m1vhhqwijfnj53brb"; depends=[bnlearn bnviewer ggplot2]; }; - dbparser = derive2 { name="dbparser"; version="2.0.2"; sha256="1zid7dnx1fsxs09sk76vywqqnhdaz53gh7r4i81abziisaa13i73"; depends=[dplyr progress purrr tibble XML]; }; + dbparser = derive2 { name="dbparser"; version="2.0.3"; sha256="1v0yp81bgq9ihgjrx336zyscrhk84sc8rpmbj35sphyc0c0isncs"; depends=[dplyr progress purrr tibble XML]; }; dbplot = derive2 { name="dbplot"; version="0.3.3"; sha256="1svizj9hcd417yii8ll9s3mnvdqpa5awy9xl71kbwpfcnpdzqf1r"; depends=[dplyr ggplot2 magrittr purrr rlang]; }; dbplyr = derive2 { name="dbplyr"; version="2.5.0"; sha256="1zxw4ignzm2fzixsf6n80f44b9q7434vamy2xj4v31wlx3dmnixv"; depends=[blob cli DBI dplyr glue lifecycle magrittr pillar purrr R6 rlang tibble tidyr tidyselect vctrs withr]; }; dbscan = derive2 { name="dbscan"; version="1.1-12"; sha256="1snfcf5jy3chh5nmvn7ashhlyv35nkajlfrlk9kzpy4jnfyv3y2n"; depends=[Rcpp]; }; dbstats = derive2 { name="dbstats"; version="2.0.2"; sha256="1rnjgzil98rys9fa0jkamfqrkski3vd7wi59mqg8xk26xw0v5c96"; depends=[cluster pls]; }; - dbx = derive2 { name="dbx"; version="0.3.1"; sha256="15ynl3w92h2bfgf5489qi0la8dkwlmp9hf64h230bvxvip9459hg"; depends=[DBI]; }; + dbx = derive2 { name="dbx"; version="0.3.2"; sha256="0d5ha0syhrgfx157hkmyfdsxf57crjj28afdb2xxyindakplgp29"; depends=[DBI]; }; dc3net = derive2 { name="dc3net"; version="1.2.0"; sha256="19ibsvbnq6y88vqvgkm31zrqwjhpml59d792bz0zkk50r1q5bnyr"; depends=[c3net igraph RedeR]; }; - dcTensor = derive2 { name="dcTensor"; version="1.2.0"; sha256="0y2imnbgvbvbmqb1vmzyykjfzkh0ckiv5q7fp4zvi2ci0w9hf90n"; depends=[fields MASS nnTensor rTensor]; }; + dcTensor = derive2 { name="dcTensor"; version="1.3.0"; sha256="1z62kz9558fj5nwp2nq6vh7ikbxbg8nm0w08y5p5dc0nzhcd4kxn"; depends=[fields MASS nnTensor rTensor]; }; dccmidas = derive2 { name="dccmidas"; version="0.1.2"; sha256="0ws853yb669hki7wrfwnj7bd75xvcb63njn1iza8q58sa6bmg6vc"; depends=[maxLik Rcpp RcppArmadillo Rdpack roll rugarch rumidas xts zoo]; }; dccpp = derive2 { name="dccpp"; version="0.1.0"; sha256="1j17rv9wklmxbxa6ri9vhl370jzhi00h7h8hz1ajzqf6v3b2lkvc"; depends=[Rcpp RcppArmadillo]; }; dcifer = derive2 { name="dcifer"; version="1.2.1"; sha256="1pibkybr2v1qci2vqbz1sms01y81x0i4r2sq23c5xkgwnwccfy9r"; depends=[]; }; @@ -8707,7 +8866,7 @@ in with self; { dclust = derive2 { name="dclust"; version="0.1.0"; sha256="1icfx52v3g7kkkc11pw0xlrc8dlx5q3n2zbrd3fccmw17jzxqbg7"; depends=[openssl phylogram]; }; dcm2 = derive2 { name="dcm2"; version="1.0.2"; sha256="1dxymql66sy0nfxqfh106cvz5r93ajpjr1w8amn03w0ciz4v5nqs"; depends=[dplyr glue magrittr modelr purrr Rcpp RcppArmadillo rlang stringr tibble tidyr]; }; dcmle = derive2 { name="dcmle"; version="0.4-1"; sha256="1zh243ya02232z56i0y05l891685my6g9v6wal6z5c92s179g85p"; depends=[coda dclone lattice]; }; - dcmodify = derive2 { name="dcmodify"; version="0.8.0"; sha256="1r4mfkf766hsr3qd60mmxy3841r8jc4d6wlb12cak4aanqisq7aj"; depends=[lumberjack settings validate yaml]; }; + dcmodify = derive2 { name="dcmodify"; version="0.9.0"; sha256="080adcvlvpiha4vlxwnxsf657i0yjmpby5iyhabbqc5hzmwm3ar5"; depends=[lumberjack settings validate yaml]; }; dcorVS = derive2 { name="dcorVS"; version="1.0"; sha256="1gawk22mv5ppbiqqm4k2pjjknsp7zxnnr0lk24l6phrvnszfaxlw"; depends=[dcov Rfast]; }; dcortools = derive2 { name="dcortools"; version="0.1.6"; sha256="1qcblwcv2rwrl502hiv0l0r137sa4k0kx892k2w1chm40y5vri3b"; depends=[ggplot2 Hmisc pheatmap Rcpp RcppArmadillo RcppEigen Rdpack Rfast]; }; dcov = derive2 { name="dcov"; version="0.1.1"; sha256="0c3a5dzpizsxlsh723pcd0d7n0mgfc9y35vrfhmskp3c1x639mh3"; depends=[Rcpp RcppArmadillo]; }; @@ -8716,16 +8875,17 @@ in with self; { ddalpha = derive2 { name="ddalpha"; version="1.3.15"; sha256="1vgyg1c2ir93nsbh4xlm774b6rhx14pyr069dpcl9vwcx2j989qc"; depends=[BH class geometry MASS Rcpp robustbase sfsmisc]; }; ddc = derive2 { name="ddc"; version="1.0.1"; sha256="1l5ljfhhyqcj4s4247vndqrz6qfcygi014l59d4gpxym810iqr26"; depends=[dtw dtwclust magrittr]; }; dde = derive2 { name="dde"; version="1.0.5"; sha256="1288zbhmh383b8z01yzblgs0lvq18vz4hzw63hjsaiaynqaj4hiw"; depends=[ring]; }; + ddecompose = derive2 { name="ddecompose"; version="1.0.0"; sha256="1n0s2q6qb09jnhxismaabn00pzjjjy0dwdhz8hyacmby468y266z"; depends=[fastglm Formula ggplot2 Hmisc pbapply ranger rifreg sandwich]; }; ddi = derive2 { name="ddi"; version="0.1.0"; sha256="0pnkylz7l6brx6i73wys637w811psxhnr39lcmkag41s6jcgabd5"; depends=[]; }; ddiv = derive2 { name="ddiv"; version="0.1.1"; sha256="0xsn74z78znrm3rnnvdphp89sb0lik564ha3wv6n3ldrfh1van8y"; depends=[MASS qpdf segmented]; }; - ddml = derive2 { name="ddml"; version="0.2.0"; sha256="07nbdx2qd4f7yrgq00djwfxil2qgnrgd4r5rrzyqcwbv21xz0ayw"; depends=[AER glmnet MASS Matrix nnls quadprog ranger xgboost]; }; + ddml = derive2 { name="ddml"; version="0.2.1"; sha256="17v3yhgs440flyqvfhjapc03xvwnvg7c0kr8cphvnhx6nmwjsq53"; depends=[AER glmnet MASS Matrix nnls quadprog ranger xgboost]; }; ddp = derive2 { name="ddp"; version="0.0.3"; sha256="03gszqzh73zq04hqa2zgxn4fkiyr1fbhx3byxsdfzmmji46f8qip"; depends=[]; }; ddpca = derive2 { name="ddpca"; version="1.1"; sha256="1qsanid7sr2nc9pwzyz4cbjc1vg0rj255d3rnh1rb22agrgj2bc1"; depends=[MASS Matrix quantreg RSpectra]; }; ddpcr = derive2 { name="ddpcr"; version="1.15.2"; sha256="1as25yc23n6jj87nccp7g2jrpvz6yxa7f6ba65g6ynvkzk57531b"; depends=[dplyr DT ggplot2 lazyeval magrittr mixtools plyr readr shiny shinydisconnect shinyjs tibble]; }; ddplot = derive2 { name="ddplot"; version="0.0.1"; sha256="03zcnc6is4qdpz3krhhz820j0an6dr7562bnmzj787xf5parwq6r"; depends=[r2d3]; }; ddsPLS = derive2 { name="ddsPLS"; version="1.2.1"; sha256="0l5dcpqs57bp6b6b718annnhilkv6n4imynylg0wimik27ipmfwl"; depends=[doParallel foreach RColorBrewer Rcpp RcppEigen shiny]; }; ddst = derive2 { name="ddst"; version="1.4"; sha256="1y0immm337adkd2bjx8c5pf02w9wysv3gj26f4qf0jiba0f2wk8n"; depends=[evd orthopolynom]; }; - ddtlcm = derive2 { name="ddtlcm"; version="0.1.1"; sha256="0ml423182xgxsdfzvl5xnyxp9ijmx5bkwvwdaqmfwk86x3994cbs"; depends=[ape BayesLogit data_table extraDistr ggplot2 ggpubr ggtext ggtree label_switching Matrix matrixStats phylobase poLCA R_utils Rdpack truncnorm]; }; + ddtlcm = derive2 { name="ddtlcm"; version="0.2.1"; sha256="1xjpw5qx2wjq8y4ayg1d3scclsrn2bkmjk9gkff57gq2n0qlwnh0"; depends=[ape BayesLogit data_table extraDistr ggplot2 ggpubr ggtext ggtree label_switching Matrix matrixStats phylobase poLCA R_utils Rdpack testthat truncnorm]; }; deBInfer = derive2 { name="deBInfer"; version="0.4.4"; sha256="1l4wim82n5q51c1f7193d3i22qrn9kfcsddyrn8izhlwsjb9q3kp"; depends=[coda deSolve MASS mvtnorm PBSddesolve plyr RColorBrewer truncdist]; }; deBif = derive2 { name="deBif"; version="0.1.8"; sha256="0zy9pn6994bpbfjk4w52qvfckcilq5nz1v21bqc63grkz0lmlgzy"; depends=[deSolve rootSolve rstudioapi shiny shinydashboard shinydashboardPlus shinyjs]; }; deFit = derive2 { name="deFit"; version="0.2.1"; sha256="0z4lc9s3wb7gab7cg1xr9gkggd2dxy8qbqqvbz1yxvnm86n2ai79"; depends=[deSolve ggplot2 R6]; }; @@ -8737,11 +8897,11 @@ in with self; { debar = derive2 { name="debar"; version="0.1.1"; sha256="0zx3rp0pnxbn57l6yafwzd66kvv6mfpr0alsp8mxhl2jl7c5f721"; depends=[ape aphid seqinr]; }; debest = derive2 { name="debest"; version="0.1.0"; sha256="1kbz17q8xg8nbak0y4f6g9pj20q02a00ijvk1xmbsbgl4xmww0ip"; depends=[flexsurv survival]; }; debkeepr = derive2 { name="debkeepr"; version="0.1.1"; sha256="1w38qz0qs26ba1c89z1c40n4rwif989gh7was7wwazr2s61wjaha"; depends=[cli dplyr magrittr rlang tibble vctrs zeallot]; }; - debugme = derive2 { name="debugme"; version="1.1.0"; sha256="1c9sg55zvf10h8198jdnpamm6f66lzw3c3jnmdp9ls6na0j0xbjd"; depends=[crayon]; }; + debugme = derive2 { name="debugme"; version="1.2.0"; sha256="16ghf60rj0l8ypm0hxjp23zxdi2ndq8ii74cilq61m107fnha9mj"; depends=[crayon]; }; debugr = derive2 { name="debugr"; version="0.0.1"; sha256="0lfq0s0hibd00558vl3dmvrkzxjc7q62xr8sqzai0pv9a9lhixcn"; depends=[rprojroot rstudioapi]; }; decido = derive2 { name="decido"; version="0.3.0"; sha256="14y3z5ys5y3kffgm0dk92rx4vd1mi9jvxn7pqvwi4jhyx7wx06pw"; depends=[Rcpp]; }; decision = derive2 { name="decision"; version="0.1.0"; sha256="13d0yyg5zp7n3r92l0l1dsffxfph6vacrlzga9rz41l5pja72z6g"; depends=[]; }; - decisionSupport = derive2 { name="decisionSupport"; version="1.113"; sha256="0gxhxjpn9nzn1s7xm9cy9g82b68g8dg6654dbj4qr4aj3cfk14w8"; depends=[assertthat chillR class dplyr fANCOVA ggplot2 ggstance magrittr msm mvtnorm nleqslv patchwork rriskDistributions stringr tidyr tidyselect]; }; + decisionSupport = derive2 { name="decisionSupport"; version="1.114"; sha256="1vd18v0wi56qd8anhwvvwab98lgh3aj785f6c6nd41ifwp2phzm3"; depends=[assertthat chillR class dplyr fANCOVA ggplot2 magrittr msm mvtnorm nleqslv patchwork rriskDistributions stringr tidyr tidyselect]; }; deckgl = derive2 { name="deckgl"; version="0.3.0"; sha256="0cjvmdiqknrq8mlqxmhkhcib40asdyl2bpllx8v1jz3h1d62zs04"; depends=[base64enc htmltools htmlwidgets jsonlite magrittr readr tibble yaml]; }; declared = derive2 { name="declared"; version="0.24"; sha256="0zj5rvdj2jcy23nms5dhqjp9w4sd87r7cr4slh6qli15w75ryr50"; depends=[]; }; decode = derive2 { name="decode"; version="1.2"; sha256="1qp0765gl3pgfdzjwj7icf3zminxxmrlw6gx3vj51y6c2y5ws4as"; depends=[]; }; @@ -8750,7 +8910,6 @@ in with self; { decomposedPSF = derive2 { name="decomposedPSF"; version="0.2"; sha256="12sb4zzvc29hvhlay97g84pn4saqyp16wckjrdgg4qqpc0rzrfz5"; depends=[forecast PSF Rlibeemd tseries]; }; decompr = derive2 { name="decompr"; version="6.4.0"; sha256="0bsin2hlb8sacmkzsv4b2fqdh5b55b67lkm41icacqnvxrisnxqp"; depends=[matrixStats]; }; decon = derive2 { name="decon"; version="1.3-4"; sha256="036cv56wf42q2p3d5h15hbrp5rc29xxy20qwv4k1qzhkq6hmw0qs"; depends=[]; }; - deconstructSigs = derive2 { name="deconstructSigs"; version="1.8.0"; sha256="014x0nb23jb98666kaav2phkvmkr38pi38jv0dqd4jv7zp0gdf1a"; depends=[BSgenome BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb reshape2]; }; deconvolveR = derive2 { name="deconvolveR"; version="1.2-1"; sha256="191bgncgwjhb13i27bf8072a0z3mkpjbbp06ys3nri0ggsv5r108"; depends=[]; }; decor = derive2 { name="decor"; version="1.0.2"; sha256="1xki8vjn363v90x7a66apnzg43ngi7in9k678f62jls2h3rhqv1f"; depends=[tibble vctrs]; }; decorators = derive2 { name="decorators"; version="0.3.0"; sha256="1y47ggfsfrbsm8z78j5ibxbm4lhp90h3qwhyh4qw5dhsd6jspsbd"; depends=[purrr]; }; @@ -8765,7 +8924,7 @@ in with self; { deepdep = derive2 { name="deepdep"; version="0.4.3"; sha256="1pz07zznlpqjkkpf5r1ik0shl7kj0vn4l5dmvs7ggc7k5n7ig3b2"; depends=[cranlogs httr jsonlite]; }; deepdive = derive2 { name="deepdive"; version="1.0.4"; sha256="0q4jjq11bd52bx0vqjxsh0fz1b72pfy4gpj5p19z7p4czf4a46c6"; depends=[data_table fastDummies plyr rpart stringr treeClust]; }; deepgmm = derive2 { name="deepgmm"; version="0.2.1"; sha256="0vwh8wgbva2a47b2yiiqjwq5qww2ckb4l66265sbp1lbis0g96li"; depends=[corpcor mclust mvtnorm]; }; - deepgp = derive2 { name="deepgp"; version="1.1.1"; sha256="0w08mdr9cszmkm1382md0lklhnna95ah0kv6kzniv3ly3fvwin2f"; depends=[doParallel FNN foreach GpGp Matrix mvtnorm Rcpp RcppArmadillo]; }; + deepgp = derive2 { name="deepgp"; version="1.1.2"; sha256="0anrc209bvi061y0f7ms5hyb2k6rgfp627w0800aw8gxhl4mli4b"; depends=[doParallel FNN foreach GpGp Matrix mvtnorm Rcpp RcppArmadillo]; }; deeplr = derive2 { name="deeplr"; version="2.0.1"; sha256="0xzhycw3yylq6hvaba3dv2wpmfaj9z6v6mzli8r4dbbzzaaa8214"; depends=[httr purrr tibble tokenizers utf8]; }; deepnet = derive2 { name="deepnet"; version="0.2.1"; sha256="0gnf50007sj28daaz2r1rp8mvz1xpc2901bxl4yb1v4s4rcx6rhg"; depends=[]; }; deepredeff = derive2 { name="deepredeff"; version="0.1.1"; sha256="027dsmc3wmm61qc0vybn02c5dbnz5nwf80m9sywci4nhirz978ik"; depends=[Biostrings dplyr ggplot2 ggthemes keras magrittr purrr reticulate rlang seqinr tensorflow]; }; @@ -8784,7 +8943,7 @@ in with self; { degreenet = derive2 { name="degreenet"; version="1.3-5"; sha256="0mv3zp5yzyf19ph6pi550g1bd2vw1hds2nfj42hidjdzjj5wqm1j"; depends=[igraph network]; }; degross = derive2 { name="degross"; version="0.9.0"; sha256="17n389a0k4jswgs908bcdhi410wpd1ljxh5izv35cldfq7dhjb3k"; depends=[cubicBsplines]; }; dejaVu = derive2 { name="dejaVu"; version="0.3.0"; sha256="0l30m707zrp05d7hywlx443n02mflxqsampmcblj3fvcbyywc1fd"; depends=[MASS]; }; - delayed = derive2 { name="delayed"; version="0.4.0"; sha256="0a00jwd4c69ba31xddl0gxjza6ydywlrgx21rm3bn8p247q5i37f"; depends=[BBmisc data_table future igraph progress R_oo R_utils R6 rlang rstackdeque uuid visNetwork]; }; + delayed = derive2 { name="delayed"; version="0.5.0"; sha256="17v9gis82yn0fvp4apv906sz8j77cr5rlj4xxxa3vkfvh196a40l"; depends=[BBmisc data_table future igraph progress R_oo R_utils R6 rlang rstackdeque uuid visNetwork]; }; deldir = derive2 { name="deldir"; version="2.0-4"; sha256="0ls69b9yynvsiy6madvzafcb0jdvxw66sin7cinpnw63israq66l"; depends=[]; }; deltaPlotR = derive2 { name="deltaPlotR"; version="1.6"; sha256="15vjg3viyfrxvvh34p8i7j8p0vpg5628g8198adhi0i2ri3ygz9a"; depends=[MASS]; }; deltaccd = derive2 { name="deltaccd"; version="1.0.2"; sha256="1iqyycjfmclr9y8gfj61naxwafjgmfwahyrc110qxzb239b501rw"; depends=[data_table doRNG foreach ggplot2 rlang scales statmod]; }; @@ -8800,11 +8959,13 @@ in with self; { demu = derive2 { name="demu"; version="0.3.0"; sha256="1mp5iz8mg0d6cyqi3f6fdhk6x5xxvng5bi13b7jnlp60wpjrq0il"; depends=[ClusterR fields Matrix Rcpp RcppArmadillo spam]; }; dendRoAnalyst = derive2 { name="dendRoAnalyst"; version="0.1.5"; sha256="16pj1s9ph0gfk9n2kxwinvmxqzwzqlryn7ph15x8navxxwwbss9g"; depends=[dplyr forecast ggplot2 lubridate mgcv minpack_lm pspline readxl stringr tibble tidyr tidyverse zoo]; }; dendextend = derive2 { name="dendextend"; version="1.17.1"; sha256="08g5z5qyrn2nkw1jw5520sval4jf9l6invqwvzsv8dkjkq8nxsc7"; depends=[ggplot2 magrittr viridis]; }; - dendroTools = derive2 { name="dendroTools"; version="1.2.11"; sha256="0p1z7fqfak491djf09fvcixd67z78qsh7818xzqchq2njbrcxpcq"; depends=[boot brnn Cubist dplR dplyr ggplot2 knitr lubridate magrittr MLmetrics oce plotly psych randomForest reshape2 scales viridis]; }; + dendroNetwork = derive2 { name="dendroNetwork"; version="0.5.4"; sha256="0jns6nfihb9wqz4sh8pbsy01kp0ml2x16jls4vqhixkbfpns4vkf"; depends=[doParallel dplR dplyr foreach igraph lifecycle RColorBrewer RCy3 reshape2 stringr tidyr]; }; + dendroTools = derive2 { name="dendroTools"; version="1.2.13"; sha256="1dvisplghjyh607ns5xnwv1v8bg7i05sp4w96g6bmkwpgshaa6b0"; depends=[boot brnn Cubist dplR dplyr ggplot2 knitr lubridate magrittr MLmetrics oce plotly psych randomForest reshape2 scales viridis]; }; dendroextras = derive2 { name="dendroextras"; version="0.2.3"; sha256="0hb7crbgsnbcwvbk05iz5ik45n7zgysmwjj6xc46131yd8l0i1qx"; depends=[]; }; dendrometry = derive2 { name="dendrometry"; version="0.0.2"; sha256="0zxavg34mmxkl5i5mi3x0g1m8pd4f9vc70906iazmmvimvvhp22c"; depends=[]; }; dendsort = derive2 { name="dendsort"; version="0.3.4"; sha256="0rs7y471wrhkgibxdmfh5xhp3pa004rrlm2w08b6qli5gq4im5d2"; depends=[]; }; denguedatahub = derive2 { name="denguedatahub"; version="1.0.4"; sha256="0h7w7qnvh7cq9v6m9axmip0nkbas3sdhccq5h5n4yny5r1jilbq4"; depends=[dplyr rlang]; }; + denim = derive2 { name="denim"; version="1.0.0"; sha256="1janjmhfz0vgrmvw0plncxlg7y1sd9578arpjkaivqgqwbkhz4r1"; depends=[Rcpp testthat viridisLite]; }; denoiSeq = derive2 { name="denoiSeq"; version="0.1.1"; sha256="18w69gxbnazg5k8bzi76slcqxnbfmrndp548zazz8bpxz3jns699"; depends=[]; }; denoiseR = derive2 { name="denoiseR"; version="1.0.2"; sha256="1q5kxiwfkrf2k0gpidzhl4hyzyjcm33rwlw4dan9nkx1181naw9l"; depends=[FactoMineR irlba Matrix]; }; denovolyzeR = derive2 { name="denovolyzeR"; version="0.2.0"; sha256="03ya5clzqp12lfhw073ri0pwgxn53a6pvnais317a8bv1yinxspb"; depends=[dplyr reshape2]; }; @@ -8822,7 +8983,7 @@ in with self; { depigner = derive2 { name="depigner"; version="0.9.1"; sha256="0vzrdw4rhrwiyc4g4ancfd43h56b72lkvabqdwdsg54hjm35c1ky"; depends=[desc dplyr fs ggplot2 Hmisc magrittr progress purrr readr rlang rms rprojroot stringr telegram_bot tibble tidyr usethis]; }; depmix = derive2 { name="depmix"; version="0.9.16"; sha256="1vi9fi131ni34z9p3x6pdp6y9v0y0nx71zg1q8898frhqwbwhd9c"; depends=[MASS]; }; depmixS4 = derive2 { name="depmixS4"; version="1.5-0"; sha256="1pacvhw5m4fsk3ysbal50fdqbvlaz8ywyqp6bn1wh42wipqbb2i8"; depends=[MASS nlme nnet Rsolnp]; }; - deps = derive2 { name="deps"; version="0.2.0"; sha256="0fq5zjlcvd34k7mn03xxw39k1dy47923n27racqdc8nipcsrm0wq"; depends=[jsonlite remotes renv]; }; + deps = derive2 { name="deps"; version="0.3.0"; sha256="1v274l8gs5by7vzgcsdsf8m3m9gkwdmw6dqvrmjx2q9j40i7wf69"; depends=[jsonlite remotes renv]; }; depth_plot = derive2 { name="depth.plot"; version="0.1"; sha256="0zjg9iyqmcnkvwc9w2j7lmk3k9nsg6n8m6vq5x44d1bp4g2gr6jv"; depends=[mvtnorm]; }; depthTools = derive2 { name="depthTools"; version="0.7"; sha256="00pn4ccsg1hjv83xqk4g0g24cz2a87shlbg8kd2dri4dcagzifg0"; depends=[]; }; derivmkts = derive2 { name="derivmkts"; version="0.2.5"; sha256="0zjdpjd7qa7zg0dyyq1y4rskk8bi2jpsxzrdg43lnsyrxg99q1n6"; depends=[mnormt]; }; @@ -8866,7 +9027,7 @@ in with self; { devRate = derive2 { name="devRate"; version="0.2.4"; sha256="06060wxji3mfwq6c58gmb07mz9sk9d5ls9d152vywjnz20ndpscd"; depends=[]; }; devoid = derive2 { name="devoid"; version="0.1.2"; sha256="1hdqww5al3wv3jncfj8zqwypv487hc4pdb1d4f1c3w68fp0b1zni"; depends=[]; }; devtools = derive2 { name="devtools"; version="2.4.5"; sha256="0jwh14clyj5flygpmifk01avs7mbnj2s1686pxzfrkcshfyhw5iq"; depends=[cli desc ellipsis fs lifecycle memoise miniUI pkgbuild pkgdown pkgload profvis rcmdcheck remotes rlang roxygen2 rversions sessioninfo testthat urlchecker usethis withr]; }; - dexter = derive2 { name="dexter"; version="1.4.0"; sha256="1dx9wvhvbrh0l8jrv02jmwz054r3nvaz4cz81m3iqviydi3hcbf6"; depends=[BH DBI dplyr dqrng MASS Rcpp RcppArmadillo rlang RSQLite sitmo tidyr]; }; + dexter = derive2 { name="dexter"; version="1.4.2"; sha256="196c12kmp5xjhgywr26p7k78p9mvpzz74rckfq88xgx9j012rwl7"; depends=[BH DBI dplyr dqrng MASS Rcpp RcppArmadillo rlang RSQLite sitmo tidyr]; }; dexterMST = derive2 { name="dexterMST"; version="0.9.6"; sha256="073xx30gavig6nhi6ppll7jdgf7yvci8nv6pyxcy9vl177l1k62b"; depends=[crayon DBI dexter dplyr igraph Rcpp RcppArmadillo rlang RSQLite tidyr]; }; dextergui = derive2 { name="dextergui"; version="0.2.6"; sha256="10v3djwani0zd27cjlf7lch7rfipnmb2p5wa7n2y5qxjqxli9z3x"; depends=[Cairo DBI dexter dplyr DT ggExtra ggplot2 ggridges htmltools htmlwidgets jsonlite networkD3 RCurl readODS readxl rlang shiny shinyBS shinyFiles shinyjs tibble tidyr writexl]; }; df2yaml = derive2 { name="df2yaml"; version="0.3.1"; sha256="1ni61pf7sjwvgbfvwy91n6fbs6aa5vviq0xy6jsgddbwrk9diigj"; depends=[dplyr magrittr rlang rrapply tibble yaml]; }; @@ -8879,7 +9040,7 @@ in with self; { dfidx = derive2 { name="dfidx"; version="0.0-5"; sha256="02ka119nxn9258hz51m603s0gwmdi8a98z0j9lx7fqjxnd01jlip"; depends=[dplyr Formula]; }; dfmeta = derive2 { name="dfmeta"; version="1.0.0"; sha256="0ca48adfhaxac33jmxbynlyg3ak9l5mmjhlr69n4hnz6325gn9vb"; depends=[data_table ggplot2 lme4 plyr]; }; dfmirroR = derive2 { name="dfmirroR"; version="2.1.0"; sha256="0npd9yllsjbb49mqdwaw75lbgx4lr8qgga70yybd6c16wdfkg396"; depends=[e1071 fitdistrplus MASS]; }; - dfms = derive2 { name="dfms"; version="0.2.1"; sha256="10vxjcwznxlrl73jdpmnw9ihjxlg7az96s11qadxyxh3v7gs85q2"; depends=[collapse Rcpp RcppArmadillo]; }; + dfms = derive2 { name="dfms"; version="0.2.2"; sha256="0p3fbvmrdrsiz3dy23i5fjldc7l5hwfh7v73sg8dkhvxxnn1ciw4"; depends=[collapse Rcpp RcppArmadillo]; }; dfmta = derive2 { name="dfmta"; version="1.7-3"; sha256="0n9056vd75vqxddagj4k23znvwv58db306xm4vv9sq044jc7kkg6"; depends=[BH Rcpp RcppArmadillo RcppProgress]; }; dfoliatR = derive2 { name="dfoliatR"; version="0.3.0"; sha256="0gl1acd5z67c2wkb806myr0ccm87waxdrnnjdq2wi8zndbc30j74"; depends=[dplR dplyr forcats ggplot2 ggpubr glue magrittr purrr rlang tibble tidyr]; }; dfoptim = derive2 { name="dfoptim"; version="2023.1.0"; sha256="0c2ws249n8ib7fx8vp32l2hswicjxsds7xm1f4gcfky9cvcacdn4"; depends=[]; }; @@ -8887,7 +9048,7 @@ in with self; { dfped = derive2 { name="dfped"; version="1.1"; sha256="11ffsah14igba276m9d3cla0kgb3isizm5d7j1iqcd0wq23il7hq"; depends=[ggplot2 rstan]; }; dfphase1 = derive2 { name="dfphase1"; version="1.2.0"; sha256="0a9cxdc81rib84sgg5mpf28nhcv1g83kvnr7rin3djyv60ccrq8x"; depends=[lattice Rcpp robustbase]; }; dfrr = derive2 { name="dfrr"; version="0.1.5"; sha256="0kgsi2jysv0hpdvmv1fng41ar7p3pgzgf1vv0dcm954jdrl2dz6d"; depends=[fda ggplot2 MASS plotly tmvtnorm]; }; - dfsaneacc = derive2 { name="dfsaneacc"; version="1.0.2"; sha256="05svhlssm1jy9skk0cn6qqy2wnqa9wjrfxarhzg1jhdclz7gsxdq"; depends=[]; }; + dfsaneacc = derive2 { name="dfsaneacc"; version="1.0.3"; sha256="1sicnpir73vvg470q1mcfd1p06vgfr6z3kfb5mnipr5z72c9gd4w"; depends=[]; }; dfvad = derive2 { name="dfvad"; version="0.3.6"; sha256="1g232y0zmgpgx6phfsx67548dvqiwa4bc8q9cvpgmkdfaskczcfx"; depends=[]; }; dga = derive2 { name="dga"; version="2.0.1"; sha256="1q860hzxrbkpmnphdysx4wk1b46wjll8sw7xjsy1lxcaz9hwcnjk"; depends=[chron Rcpp RcppArmadillo]; }; dggridR = derive2 { name="dggridR"; version="3.0.0"; sha256="1915lc81yw6ns02fi37xjqd2zbdzhdsvqqb6c9w4b6i0665yb9ja"; depends=[dplyr Rcpp rlang sf sp]; }; @@ -8899,7 +9060,6 @@ in with self; { dhga = derive2 { name="dhga"; version="0.1"; sha256="1n48irj53g3kn451ak5ly50wxdn7qmzi2kib8clsvcx2n7mvpgcm"; depends=[VennDiagram]; }; dhglm = derive2 { name="dhglm"; version="2.0"; sha256="1918wkylldcdxjggly3a4yh4cv2nkig5bjfx0j79av633hahlg92"; depends=[boot car MASS Matrix sandwich]; }; dhh = derive2 { name="dhh"; version="0.0.1"; sha256="00kg2x1was85aq2vr15bak8y5p4mymbs8pbriijlbw64401djmb0"; depends=[]; }; - dhis2r = derive2 { name="dhis2r"; version="0.1.1"; sha256="019qrkcssxmvmhla3vfjq9m0vwv9j9h7njr2sjpmk4cqcdxvcbjn"; depends=[attempt curl dplyr httr2 R6]; }; dhlabR = derive2 { name="dhlabR"; version="1.0.2"; sha256="1hqs31ddh82mx8zw8lyzcdl3x5dgpx88shjk8frzib6i4cgq48s8"; depends=[dplyr httr jsonlite purrr tibble zoo]; }; dhsage = derive2 { name="dhsage"; version="0.1.0"; sha256="1p239fsay49rvakxgkgnghra7p4nzyvfird8mc4i4lz4w133x1jd"; depends=[]; }; di = derive2 { name="di"; version="1.1.4"; sha256="1w2gjhyi410z98d8wnhbd69jxm69nz4pmnr4fb09i70a90f53s25"; depends=[scales]; }; @@ -8909,7 +9069,7 @@ in with self; { diagonals = derive2 { name="diagonals"; version="6.4.0"; sha256="1c5pf23bcq47m9n2s5m5bkcksnifz9g06xc9149163i8mqhzia7l"; depends=[]; }; diagram = derive2 { name="diagram"; version="1.6.5"; sha256="1r3lyl0h7mk9cfg8smr3jydfkjdawaphnxibkxfjqa7029vkxh79"; depends=[shape]; }; dialr = derive2 { name="dialr"; version="0.4.2"; sha256="16lpb93shwr0gw7pk3q629kgsvh9csgxyy344m9za7qx9m2vjnnb"; depends=[dialrjars rJava]; }; - dialrjars = derive2 { name="dialrjars"; version="8.13.25"; sha256="1dy7s4ssa1xkw6m663h0hf79jf09cd98r009cp6s3gggpylfi7bm"; depends=[rJava]; }; + dialrjars = derive2 { name="dialrjars"; version="8.13.36"; sha256="1r02wimq3bnb28dz65jm0kmkkkd02k0a4d50cjn5n54ck8lf9hsc"; depends=[rJava]; }; dials = derive2 { name="dials"; version="1.2.1"; sha256="0xrvvz4pkzmjsizjqfcvpn6f1cl9yp56lyc2iw8vcvwa18gb6szf"; depends=[cli DiceDesign dplyr glue hardhat lifecycle pillar purrr rlang scales tibble vctrs withr]; }; diaplt = derive2 { name="diaplt"; version="1.4.0"; sha256="103hq13ql8xs1zb90is2r1lanj5vpvz9rk315zvbd8am00fshc9n"; depends=[]; }; diathor = derive2 { name="diathor"; version="0.1.0"; sha256="0nbqjaxb2fzcg9w67nbrszwv9swr1kjmg4dximfc8qdya1kmv8z9"; depends=[data_table ggplot2 purrr stringdist stringr tibble tidyr vegan]; }; @@ -8923,7 +9083,7 @@ in with self; { did2s = derive2 { name="did2s"; version="1.0.2"; sha256="0iyz6z4w2im22rvbpabql2w1cncv0pnrh0hp7agf0pazcpzk2jh6"; depends=[boot broom data_table did didimputation fixest ggplot2 Matrix MatrixExtra rlang SparseM staggered]; }; didimputation = derive2 { name="didimputation"; version="0.3.0"; sha256="122z473jkf5jb66s2g7vdqi0q56v8chz2dpl61qkcgqhv4hbh1q3"; depends=[broom data_table dplyr fixest glue magrittr Matrix purrr Rcpp RcppArmadillo stringr tidyr]; }; didrooRFM = derive2 { name="didrooRFM"; version="1.0.0"; sha256="12clfnbm56jwldw0afb0nb0argnd97mx7369jiywhxy0p4xqibqq"; depends=[dplyr]; }; - diemr = derive2 { name="diemr"; version="1.2.2"; sha256="1an07y6sbwjhz0xkq2qdxzyb57nw4dgcgj8rv8qhxfsd6rw11shp"; depends=[vcfR zoo]; }; + diemr = derive2 { name="diemr"; version="1.3"; sha256="1abvk6hk3vnfdd4yif0n1ngw68h32r001a0v6xi4n9qi72g82p9j"; depends=[vcfR zoo]; }; dietr = derive2 { name="dietr"; version="1.1.4"; sha256="0l0pf55xhfzk7il7cvcasf6gi8nvcckygvryhfqldyq7zmr1pgyh"; depends=[rfishbase]; }; diezeit = derive2 { name="diezeit"; version="0.1-0"; sha256="0rq1k08byvqn99wpql7drnrcxlzcqrcxixh7bczbc8dv1hhsgk9i"; depends=[brew httr jsonlite]; }; difNLR = derive2 { name="difNLR"; version="1.4.2-1"; sha256="1wrvsjbvvqwpv7cwc445n7l4ly8gvj8hyd66k02ib8r5854zn192"; depends=[calculus ggplot2 msm nnet plyr VGAM]; }; @@ -8931,7 +9091,7 @@ in with self; { difconet = derive2 { name="difconet"; version="1.0-4"; sha256="0cjadi4mnpfmy18vyp0dw55mnhs0zddf51w59gvq6gszk145z3bq"; depends=[data_table gplots mvtnorm stringr]; }; diffEnrich = derive2 { name="diffEnrich"; version="0.1.2"; sha256="0fa0v24ir8an82mx38489zavqfya3130q9z52dmm62lnf7pvkvzl"; depends=[dplyr ggnewscale ggplot2 here reshape2 rlang stringr]; }; diffIRT = derive2 { name="diffIRT"; version="1.5"; sha256="0kip6wz9l9q80qsqwf32pwz7d9vqin6dgfwf0nxlrlzf8xjsxgim"; depends=[statmod]; }; - diffcor = derive2 { name="diffcor"; version="0.8.2"; sha256="0jpvrdahnpsm5h9qmnz440jx7ja59b164hfp9nlg44yxffv7dh2r"; depends=[MASS]; }; + diffcor = derive2 { name="diffcor"; version="0.8.3"; sha256="0r5hc058h59hz249dx2nf91i45ldjilfrq1a2c4vyp9jvi12qpj5"; depends=[MASS]; }; diffdf = derive2 { name="diffdf"; version="1.0.4"; sha256="03cr0gvspchdj49kiggsm6i9h5d9z07aswggj4n46lnyz52ihivj"; depends=[tibble]; }; diffdfs = derive2 { name="diffdfs"; version="0.9.0"; sha256="1b61wx9fy7a4rb6jh1cvayf1w1far74pgcliqyk9pzn06nlqylfj"; depends=[arrow dplyr janitor rlang]; }; diffeR = derive2 { name="diffeR"; version="0.0-8"; sha256="0l2pm4kh6yq3h3v27a5r28c0724g89pglaxd14f14cdxk51hznqx"; depends=[ggplot2 raster rlang terra tidyr tidyselect]; }; @@ -8943,19 +9103,19 @@ in with self; { diffpriv = derive2 { name="diffpriv"; version="0.4.2"; sha256="12q2v93369bshid83rsy1csbr9ay6rfpd8zdxm12zi7py3f9sjs8"; depends=[gsl]; }; diffr = derive2 { name="diffr"; version="0.1"; sha256="0ydwnpyzirynffsnvip667y0jqzy7yfqlfpqhb38xvmd9rmwfbp8"; depends=[htmlwidgets]; }; diffudist = derive2 { name="diffudist"; version="1.0.1"; sha256="0s8k949l7fvdy0c1zlrk4zr5dnxksq67spwg8mpdsyc2xchh7b5c"; depends=[expm ggdendro ggplot2 igraph Matrix RColorBrewer Rcpp RcppEigen reshape2 rlang viridis]; }; - diffusion = derive2 { name="diffusion"; version="0.2.7"; sha256="1j9s9vw5sc4k956bk4yp3bf4fnp7lhhkwcvlzvsh1w4dyaj8l35h"; depends=[dfoptim nloptr systemfit]; }; + diffusion = derive2 { name="diffusion"; version="0.4.0"; sha256="1bgswz2ichzgdb3ckw0sgxkqv3pf1lpzkjb3ly389ln03q0iwnwq"; depends=[nloptr optimx systemfit]; }; diffusionMap = derive2 { name="diffusionMap"; version="1.2.0"; sha256="1rvk7069brlm1s9kqj4c31mwwr3mw4hmhay95cjjjfmw5xclff2j"; depends=[igraph Matrix scatterplot3d]; }; diffval = derive2 { name="diffval"; version="1.1.0"; sha256="1qhbby9zfckkkxbpvbnym3i1pfapgrjf0m61fly9v7k50j07d4cd"; depends=[]; }; - diffviewer = derive2 { name="diffviewer"; version="0.1.1"; sha256="01phkaaa0zylyi23siwam18i1ggfgq2m66d69lnz9ips1yh12yca"; depends=[htmlwidgets jsonlite]; }; + diffviewer = derive2 { name="diffviewer"; version="0.1.2"; sha256="1rwcqmc9h7ggxfkc57wklz5vqqanlr0mff7f2613gkh9pci5nadg"; depends=[htmlwidgets jsonlite]; }; digest = derive2 { name="digest"; version="0.6.35"; sha256="07vqv2mnf8ppan2a3gydh4yr84n8489hypfas1rlk7050nxkycyc"; depends=[]; }; - digiRhythm = derive2 { name="digiRhythm"; version="1.1"; sha256="0wdlwgfr9rppwssh3xpsj78rqan1lsjw3nx5f855w2hh873sakwb"; depends=[crayon dplyr ggplot2 lubridate magrittr pracma readr stringr tidyr xts zoo]; }; + digiRhythm = derive2 { name="digiRhythm"; version="1.2"; sha256="0bchk3vqdvn6hnw6cglsr7i7nvcdk5c4kyw4jainq08i7zc4jwsv"; depends=[crayon dplyr ggplot2 lubridate magrittr pracma readr stringr tidyr xts zoo]; }; digitTests = derive2 { name="digitTests"; version="0.1.2"; sha256="0giz0zr8rcvfv36qmqy6fpamjcansrq4bs3znnq0g97iprj0x3i5"; depends=[]; }; digitalDLSorteR = derive2 { name="digitalDLSorteR"; version="1.0.1"; sha256="05wcvv68p55hxf9babr19528khky1pmgfbvm502qhk7ba1arzivf"; depends=[dplyr ggplot2 ggpubr grr gtools keras Matrix pbapply reshape2 reticulate rlang S4Vectors scran scuttle SingleCellExperiment SummarizedExperiment tensorflow tidyr zinbwave]; }; digitalPCR = derive2 { name="digitalPCR"; version="1.1.0"; sha256="0hwqq84yr1hnvf4bygc5425887dhqjjjyy1ils71iavcal04s8pb"; depends=[]; }; digitize = derive2 { name="digitize"; version="0.0.4"; sha256="1qw4x4z9vrs79sd9b2daw668nc6nvjl4qhayfqmd87yxa2ydv6x0"; depends=[readbitmap]; }; - dilp = derive2 { name="dilp"; version="1.0.0"; sha256="0xm4qfzgxv2r41f4z718cnfdpijnvbsq2w7cc0i5w3ndj3x63sk7"; depends=[dplyr ggplot2 ggrepel magrittr rlang stringr tidyr vegan]; }; + dilp = derive2 { name="dilp"; version="1.1.0"; sha256="0pvd7xsg9g772n6m8h88rigkmnivmqrqj33ar1y2iq2z3k4r93jz"; depends=[dplyr ggplot2 ggrepel magrittr rlang stringr tidyr vegan]; }; dimRed = derive2 { name="dimRed"; version="0.2.6"; sha256="05zlkf6hjdqqr1sgw7ww9f17vjnsiqfaj9kvdvi146phh53v2zls"; depends=[DRR magrittr]; }; - dimensio = derive2 { name="dimensio"; version="0.6.0"; sha256="1g81ywl3i0wa86w2d8489hlxavnimd8jrry8ipmf67vm73sxl2p8"; depends=[arkhe]; }; + dimensio = derive2 { name="dimensio"; version="0.8.0"; sha256="0xrlik2f08j76q542dgzwi597qavync7qnv2nzlk2blgcgd9i8g0"; depends=[arkhe]; }; dimensionsR = derive2 { name="dimensionsR"; version="0.0.3"; sha256="1bic5ynqapz4mh3bcv58r00ip5s04mc8n58yhlkbrnbcqyqaca4f"; depends=[httr jsonlite]; }; dina = derive2 { name="dina"; version="2.0.0"; sha256="1sq7998xc5qhvd8clc8r32ch7axinh2a2dc7i1w2p148wv130yhd"; depends=[Rcpp RcppArmadillo rgen simcdm]; }; dinamic = derive2 { name="dinamic"; version="1.0.1"; sha256="01w8fzjpvz4mwhnqhjjixy7q60hdlpqcm33i98qnighkry024ysm"; depends=[]; }; @@ -8965,7 +9125,7 @@ in with self; { dipm = derive2 { name="dipm"; version="1.9"; sha256="1hzcwjnjrhd1s31w8pnyhpfz519jvj820jyq1rdkq8qllny5jbrk"; depends=[ggplot2 partykit survival]; }; diproperm = derive2 { name="diproperm"; version="0.2.0"; sha256="0qh8zzpbsjfwh8q833n5pchb6dakqdza77ab7vmsidfbzndka11m"; depends=[dplyr DWDLargeR e1071 ggplot2 gridExtra lemon Matrix sampling SparseM usethis]; }; dipsaus = derive2 { name="dipsaus"; version="0.2.8"; sha256="1gmb5jlvxwhj2ryqgvw8mfq30h414cgsa9jf6psz4qrr5dssh98l"; depends=[base64enc cli digest fastmap future future_apply jsonlite progressr R6 Rcpp rlang rstudioapi shiny stringr]; }; - diptest = derive2 { name="diptest"; version="0.77-0"; sha256="0cnaz1akl86vg5p0g4yl4r66407dxssfki130rrwxpbbbqakbj63"; depends=[]; }; + diptest = derive2 { name="diptest"; version="0.77-1"; sha256="04r8c6xy5vympxaxmgnjib4pqh97f9k6b43i66qhzkl3yh0awki2"; depends=[]; }; dipw = derive2 { name="dipw"; version="0.1.0"; sha256="0nxjwiffi1ivafzha3c35kjk36ai7na0nbfl6x3gpsi2km7b84nd"; depends=[glmnet Matrix Rmosek]; }; directPA = derive2 { name="directPA"; version="1.5.1"; sha256="0q6g18rwz5bfg73f144lzfp0apc4jf2gibh8h3vci0fnmwfvs7gz"; depends=[calibrate plotly]; }; directlabels = derive2 { name="directlabels"; version="2024.1.21"; sha256="1zmnyqipiv6gxqi2ix5jzbql53p3kjv76l76kj7gv1llzy2a8fxv"; depends=[quadprog]; }; @@ -8976,6 +9136,7 @@ in with self; { dirttee = derive2 { name="dirttee"; version="1.0.2"; sha256="1kmchjvm5x3gsvq2dqxr4di2l607j1ivsm75zwggaiwi8yjz9s4c"; depends=[expectreg formula_tools MASS Matrix mgcv nloptr provenance rlang survival]; }; disaggR = derive2 { name="disaggR"; version="1.0.5.2"; sha256="11lj0x7mq3lmsg03anyk3jnkl0calgipyar2d76rb2x13b33v3kd"; depends=[RColorBrewer]; }; disaggregation = derive2 { name="disaggregation"; version="0.3.0"; sha256="052l1bky89a9cb6bh22lcksijbri9wdv3pw4wh51c7a8ah9zdqbr"; depends=[cowplot dplyr fmesher ggplot2 Matrix RcppEigen sf sparseMVN splancs terra tidyterra TMB]; }; + disastr_api = derive2 { name="disastr.api"; version="1.0.6"; sha256="08yf0i94lrs25ffy9g6md8mzxcq9s3ywcw0ryvfddi25ddym6jxy"; depends=[httr jsonlite]; }; disbayes = derive2 { name="disbayes"; version="1.1.0"; sha256="0dzgs048pwpl59fpnvqdra001xkwllxpkaxanwdbmzc8l1xmrwb2"; depends=[BH dplyr generics ggplot2 loo magrittr matrixStats mgcv Rcpp RcppEigen RcppParallel rstan SHELF StanHeaders tibble tidyr]; }; discAUC = derive2 { name="discAUC"; version="1.0.0"; sha256="1lw4ikrgb0w88k7gjyjv3qq0xy4h588rq7sgqk1w6zhv3qr8k34z"; depends=[dplyr glue rlang tibble]; }; discFA = derive2 { name="discFA"; version="1.0.1"; sha256="0z455pymg48j5z8g4z6bpv8qrrwxj6gfw2p2135dpvl37jpgha42"; depends=[VGAM]; }; @@ -8991,8 +9152,6 @@ in with self; { discourseGT = derive2 { name="discourseGT"; version="1.2.0"; sha256="00s7bcwc5mdra5wwf3wac6s0bj2n6ryqfx7bv2zji6fp0h4ya4wc"; depends=[dplyr GGally ggplot2 ggrepel igraph network]; }; discoveR = derive2 { name="discoveR"; version="3.1.2"; sha256="1smy2bzzqc4nvrd4qj2sq4d1f0pvbm4nixxh8xpy22lwwa8pkd24"; depends=[cluster colourpicker config DT echarts4r FactoMineR ggdendro ggplot2 golem htmltools htmlwidgets loadeR plotly rlang shiny shinyAce shinycustomloader shinydashboard shinydashboardPlus shinyjs]; }; discoverableresearch = derive2 { name="discoverableresearch"; version="0.0.1"; sha256="0gw9fpmsqj1cj2qr7hqr86j28kjn3qfykdkkxrazj3dnv981xhhy"; depends=[dplyr magrittr ngram readr stopwords stringdist stringi synthesisr tm]; }; - discreteRV = derive2 { name="discreteRV"; version="1.2.2"; sha256="1lhf67cccr96zl3j1sysh2bv0pbgvkbgjdzm35fvrdm7k74ypjsi"; depends=[MASS plyr]; }; - discretecdAlgorithm = derive2 { name="discretecdAlgorithm"; version="0.0.7"; sha256="01x3qfjj7dwv0m9q8zdhfrpbj9ys9y5p7d3z8ywjrqy4jw88svjs"; depends=[igraph Rcpp RcppEigen sparsebnUtils]; }; discretefit = derive2 { name="discretefit"; version="0.1.2"; sha256="0xyv3lff6xmz9q1k2lprll68fw9ckqhgl1z87pd9rm0ldy969m9p"; depends=[Rcpp]; }; discretization = derive2 { name="discretization"; version="1.0-1.1"; sha256="0jkxi0rirzi3dc3886b97sqwmkrkp25mq6avzp58iqy1w58likpk"; depends=[]; }; discrim = derive2 { name="discrim"; version="1.0.1"; sha256="098021yq1bdqd0hnpv3lh4w7zna2v0kn4pbsffgbkigg0qi8cgm0"; depends=[dials parsnip rlang tibble withr]; }; @@ -9000,7 +9159,7 @@ in with self; { discursive = derive2 { name="discursive"; version="0.1.1"; sha256="14wn01p6vx1y1aprhz4r8y9dmvfxslif37nx854xnx6ncnihag57"; depends=[SnowballC stm stringr tm]; }; disdat = derive2 { name="disdat"; version="1.0-1"; sha256="1m22pichm603gn9h94vx0kmds28krlp9ax1yrsfwx12rqchcdhk7"; depends=[]; }; diseasemapping = derive2 { name="diseasemapping"; version="2.0.6"; sha256="1qjzyicz9wg63vqkkxpiqj991sirkpgax6cl9b6hr939rf2axs8j"; depends=[terra]; }; - diseasystore = derive2 { name="diseasystore"; version="0.2.0"; sha256="0z4djql08iy9sf6bbcaj79yja2rc0df4lyhqsxvgl1mcbzy816gg"; depends=[checkmate DBI dbplyr dplyr glue ISOweek lintr lubridate purrr R6 readr rlang SCDB stringr tidyr tidyselect zoo]; }; + diseasystore = derive2 { name="diseasystore"; version="0.2.1"; sha256="17ypayb3bnan6ar6yv3n1l56yb3wzxpj7vc1fzbkxg1pgqrm43jg"; depends=[checkmate DBI dbplyr dplyr glue ISOweek jsonlite lubridate purrr R6 readr rlang SCDB stringr tidyr tidyselect zoo]; }; disk_frame = derive2 { name="disk.frame"; version="0.8.3"; sha256="0mkzvxbjr9iw2bmnw4s5s7glly1nnf4j83y6yzw5vg1gwqghynky"; depends=[arrow benchmarkme bigreadr bit64 crayon data_table dplyr fs fst future future_apply globals glue jsonlite pryr purrr Rcpp rlang stringr]; }; dismo = derive2 { name="dismo"; version="1.3-14"; sha256="1msc75xnc9lbnn8pivd5j4jvb1b9p3xgybfm2ak2mpb2aplz5837"; depends=[raster Rcpp sp terra]; }; disordR = derive2 { name="disordR"; version="0.9-8.2"; sha256="07ydnyifqdsan0kp74mlxaviwj4ccnsh77z36gsh2cpyhda2la8d"; depends=[digest Matrix]; }; @@ -9010,7 +9169,7 @@ in with self; { dispmod = derive2 { name="dispmod"; version="1.2"; sha256="16r6is0pchzc9mxpz0c44f72j76vsh3j9damalcxajrha06dkdq4"; depends=[]; }; disposables = derive2 { name="disposables"; version="1.0.3"; sha256="0q5wacjclspn2fh7z1pg2l67ll51n75wck5h2fdq2vxy3qn3vwis"; depends=[]; }; dispositionEffect = derive2 { name="dispositionEffect"; version="1.0.1"; sha256="17rj63jb8f3a00sakrsyw13syl6p54pbkjxgxpsyi8yhc690yfrl"; depends=[dplyr lubridate magrittr progress purrr]; }; - disprofas = derive2 { name="disprofas"; version="0.1.3"; sha256="16gbd9algrs6pqid8k96p9r9pzfy337jv506alnajvwirs59sldd"; depends=[boot ggplot2]; }; + disprofas = derive2 { name="disprofas"; version="0.2.0"; sha256="16d0r94lj2bxp1dpizp5grjcbh627v5qqwj5iw8j4k345m784pcl"; depends=[boot ggplot2 lifecycle rlang]; }; disprose = derive2 { name="disprose"; version="0.1.6"; sha256="0jmn8xjwfr3dhrsmx3lq8kz7lq9pnk95mgr97gi72c86c7rap935"; depends=[]; }; dissCqN = derive2 { name="dissCqN"; version="0.1.0"; sha256="142f4ggzwdhf2vm9kisayna9a5j17mmy2jckhjrvxh4k5dc3ssf6"; depends=[]; }; dissever = derive2 { name="dissever"; version="0.2-3"; sha256="1lgs5nmv3lpm4gsryxvcwiwibvvg9flv23q8maisp77x49c18qcp"; depends=[boot caret dplyr foreach magrittr plyr raster sp viridis]; }; @@ -9047,7 +9206,7 @@ in with self; { distrr = derive2 { name="distrr"; version="0.0.6"; sha256="04lhrc92y6dqnfpqlmynjvn2dndzkknnvwsr5pf73dfpgv7n3s1f"; depends=[dplyr magrittr rlang tidyr]; }; disttools = derive2 { name="disttools"; version="0.1.8"; sha256="1jm3nqyywdzpbfvk2mffmhp75al1hcvd5l4r21fbd3iz2anll0ma"; depends=[]; }; dittoViz = derive2 { name="dittoViz"; version="1.0.1"; sha256="1ma06cc4bdrmp9r7yxa3mrqzys5ap6i1sifsgsr31zjnl6yxfk0w"; depends=[cowplot ggplot2 ggrepel ggridges]; }; - dittodb = derive2 { name="dittodb"; version="0.1.7"; sha256="1z7xw1cl1drjwq58iz6c6xqz6dpr38g0mdck2yimyjagwpjb43kq"; depends=[DBI digest glue lifecycle rlang]; }; + dittodb = derive2 { name="dittodb"; version="0.1.8"; sha256="13w78vhl1skc9073k5aplxm21l0cny8aklp75qljhla5p6ggq02w"; depends=[DBI digest glue lifecycle rlang]; }; div = derive2 { name="div"; version="0.3.1"; sha256="1k4c34wpwfj7yqnk1x9sjzn3dc2vdzhpy8g4c00aqs3nbgcknyn8"; depends=[dplyr ggplot2 gridExtra kableExtra magrittr plotly pryr rlang rpart stringr tibble tidyr tidyverse]; }; divDyn = derive2 { name="divDyn"; version="0.8.2"; sha256="1rqk7ih0j6d3ykx7d0r0c33bcbksw4paman5f92ragw2a96d04cf"; depends=[Rcpp]; }; diveMove = derive2 { name="diveMove"; version="1.6.2"; sha256="04naajbri3jrdcggh7ja1niyqb4l2afawpcw5nay0bx7823i5nhq"; depends=[geosphere KernSmooth plotly quantreg uniReg]; }; @@ -9069,6 +9228,7 @@ in with self; { dlib = derive2 { name="dlib"; version="1.0.3.1"; sha256="1rchl4f3zj0azz8d4n139daba2gz6vnm60jq45vgc9gphk2mrnnb"; depends=[Rcpp]; }; dlim = derive2 { name="dlim"; version="0.1.0"; sha256="12sa1bpslans836v9fvma2wj8qspnc521saaw02q9iygkh7kf1sy"; depends=[dlnm ggplot2 mgcv reshape2 rlang tsModel viridis]; }; dlm = derive2 { name="dlm"; version="1.1-6"; sha256="0mxfakryagyg2idjhw1ydp4xqk57s3z17cv69hj16lisx8q43pc9"; depends=[]; }; + dlmtree = derive2 { name="dlmtree"; version="1.0.0"; sha256="01nzhi1ysbvfl8f3asba9l2n72aidk632njv5m50k9xjfcjhayqb"; depends=[dplyr ggplot2 mgcv Rcpp RcppArmadillo RcppEigen shiny shinythemes tidyr]; }; dlnm = derive2 { name="dlnm"; version="2.4.7"; sha256="0mbww28n95vnd6wrn1b4mfsdvnyffa8mr6ws4jqmqdc23nydl9p4"; depends=[mgcv nlme tsModel]; }; dlookr = derive2 { name="dlookr"; version="0.6.3"; sha256="047f616pcjvv9bd7crphrbvql5qn6j50495px9244fl50vyklzx6"; depends=[dplyr ggplot2 gridExtra hrbrthemes htmltools kableExtra knitr mice pagedown purrr reactable rlang rmarkdown rpart shiny showtext sysfonts tibble tidyr tidyselect]; }; dlr = derive2 { name="dlr"; version="1.0.1"; sha256="13gr8rk8igbypq9mg00pyk2pjczxr1ghkj5287gijxnxch7zdknc"; depends=[digest fs rappdirs rlang]; }; @@ -9081,17 +9241,16 @@ in with self; { dmetatools = derive2 { name="dmetatools"; version="1.1.1"; sha256="0n62lfga8br3p3vn10rs56mbrbsrr7b6m8cb15za52nm2qn9m3a5"; depends=[mada MASS]; }; dml = derive2 { name="dml"; version="1.1.0"; sha256="0z1dalgxh5nhrac49vh60d5awzjylc8b8mn5fk379c324milm59l"; depends=[lfda MASS]; }; dmlalg = derive2 { name="dmlalg"; version="1.0.2"; sha256="1ixjpalg3q0wnddrli6v66kky3pxf90sjgiia8jhk4nds0h58a72"; depends=[glmnet lme4 matrixcalc randomForest]; }; - dmm = derive2 { name="dmm"; version="2.1-9"; sha256="1gca90yh3lysp4rqxa8dp7d5mni57n1cj5q99y04j9aly3b4b0gb"; depends=[MASS Matrix pls robustbase]; }; + dmm = derive2 { name="dmm"; version="2.1-10"; sha256="1p4g0nb246val8p6l2jj665yp0aa4jxxjyi384i2jcwxyy5hmiyb"; depends=[MASS Matrix nadiv pls robustbase]; }; dmri_tracking = derive2 { name="dmri.tracking"; version="0.1.0"; sha256="0aij0n5p6cp75r5b3bfpmhnmz2nixbb4kwacixg66g6kilwj3sis"; depends=[rgl]; }; dmtools = derive2 { name="dmtools"; version="0.2.6"; sha256="0z77whal18sxmfqalv39w85vnc84c838yh3dp144v7w198n095fy"; depends=[dplyr httr lubridate magrittr progress purrr readxl tibble tidyr]; }; dmutate = derive2 { name="dmutate"; version="0.1.3"; sha256="1dxx4v9fg0cd2m5lwk3j6n9g6n9zqr7rs75yiz3m3q8cpw1pjqpk"; depends=[dplyr MASS]; }; - dnapath = derive2 { name="dnapath"; version="0.7.4"; sha256="1xpx981sws51kyryc2frsn9ppd55xbkz0rz9v5qbxc3rhpa8f01g"; depends=[corpcor curl dplyr ggplot2 gtools igraph Rcpp RcppArmadillo Rdpack SeqNet tibble wCorr]; }; - dndR = derive2 { name="dndR"; version="1.3.1"; sha256="1lyynil93s2kmsxgjw7dqz8p56v10v93y9zmkbvpphfbh38z7kda"; depends=[dplyr ggplot2 magrittr purrr stringr tidyr]; }; + dndR = derive2 { name="dndR"; version="2.0.0"; sha256="1m1s48acsdfa5sn4ikqx4kp804q7v2a5w93qxz3pr5a9g1s57yng"; depends=[dplyr ggplot2 magrittr purrr stringr tidyr]; }; dng = derive2 { name="dng"; version="0.2.1"; sha256="0yi1fs4yvlsy3j128l7s5kwq8mhdd5fr74y2bzj7cjrxi7wgz2hg"; depends=[Rcpp]; }; dnn = derive2 { name="dnn"; version="0.0.6"; sha256="0mij6d69hhzrcp3yvqwmajhn4bm2bnc3lk9hrkh5ly2a21g46yg4"; depends=[ggplot2 Rcpp RcppArmadillo survival]; }; dnr = derive2 { name="dnr"; version="0.3.5"; sha256="16s06jvwmvhxgvrmfav1xfszjrn7j2cm4jw5xyx6w5lb5434kzcq"; depends=[arm ergm glmnet igraph network sna]; }; do = derive2 { name="do"; version="2.0.0.0"; sha256="16c6ksdas678k1285vk526ga3qkfb658nq4j5z9safjkyl1d5lrp"; depends=[crayon data_table desc httr openxlsx plyr reshape2 rstudioapi rvest stringr tidyr tidyselect tmcn usethis xml2]; }; - doBy = derive2 { name="doBy"; version="4.6.20"; sha256="08nsl9xzyi2k7xkwa9mn91fn77ji0z9z5lm388pfdmydbfmpy2ks"; depends=[broom Deriv dplyr ggplot2 magrittr MASS Matrix microbenchmark pbkrtest tibble]; }; + doBy = derive2 { name="doBy"; version="4.6.21"; sha256="01s9kls9j1nvygh0cc2bfd6n5sjccaalvfw3zx8sv7r2p4clgsij"; depends=[boot broom cowplot Deriv dplyr ggplot2 MASS Matrix microbenchmark modelr pbkrtest rlang tibble tidyr]; }; doFuture = derive2 { name="doFuture"; version="1.0.1"; sha256="1avv5kv1c43gmvbh5iwxlwk7yl6prndpcgy0blkwarl3nsgcq4cm"; depends=[foreach future future_apply globals iterators]; }; doMC = derive2 { name="doMC"; version="1.3.8"; sha256="18qrcvqwm4cclvk8spvyi281y8prwzivj52xmzk1l9a82j2ny65j"; depends=[foreach iterators]; }; doMPI = derive2 { name="doMPI"; version="0.2.2"; sha256="0ahwm17p3gq1yvc8v6sr6sb8z7i6zws8d1pf46qynl0gd4amg938"; depends=[foreach iterators Rmpi]; }; @@ -9115,14 +9274,16 @@ in with self; { document = derive2 { name="document"; version="4.0.0"; sha256="1bkpyd1cg5r6g1jcwf6xqy0bviwd88i3k2jfzggzxpnva2s02y8y"; depends=[callr checkmate desc fritools rcmdcheck roxygen2 rstudioapi]; }; documenter = derive2 { name="documenter"; version="0.1.3"; sha256="0azwak0hm7xydamvaj42hy1kl8an9f90i2lm91va7n08vmn8k064"; depends=[htmltools magrittr officer yaml]; }; docxtractr = derive2 { name="docxtractr"; version="0.6.5"; sha256="1kki49g0sfhbx2d4swrkv21akws8ayrsd4h3v148xmzdlsrvhhiw"; depends=[dplyr httr magrittr purrr xml2]; }; - dodgr = derive2 { name="dodgr"; version="0.2.21"; sha256="0nfnpa47fism4wwc7vfy0b8qyd4carkxa43x460crmk0d5x3n3kv"; depends=[callr digest fs magrittr osmdata Rcpp RcppParallel RcppThread]; }; + dodgr = derive2 { name="dodgr"; version="0.4.0"; sha256="0r1p2zj6f2y6v2mk59apas8hcxcfxg6b2mniz5d6nnq074a57s9m"; depends=[callr digest fs magrittr memoise osmdata Rcpp RcppParallel RcppThread]; }; doebioresearch = derive2 { name="doebioresearch"; version="0.1.0"; sha256="1rmvb6pa71frvjszpsjaw3ahm70kyykrq6zfjqk8smgcg397k9pi"; depends=[agricolae]; }; doex = derive2 { name="doex"; version="1.2"; sha256="1r999z30ipa04pgck0hfalqxihb1bj8sdhlkkhf4plb7maaz3qm3"; depends=[]; }; dogesr = derive2 { name="dogesr"; version="0.5.0"; sha256="0w5qps781c406br5rba6mv127yrlgq7rzchk55j7mndrm7hwia63"; depends=[dplyr ggplot2 ggthemes igraph knitr qpdf Rdpack rmarkdown]; }; dominanceanalysis = derive2 { name="dominanceanalysis"; version="2.1.0"; sha256="1kp8x77j20ak5xgp67f2ny00s22q6yr8qz5lc5kdmvdrimqkpnah"; depends=[ggplot2]; }; domino = derive2 { name="domino"; version="0.3.1"; sha256="0f67w0z5jy82kgm3l1rji430ayigw30vmmwp3i1nz0xibsx7jxv4"; depends=[]; }; - domir = derive2 { name="domir"; version="1.1.1"; sha256="01qn62xnykgbk6857i6d5xv7zcxd63g1hakry5qxgdczivkpy4m6"; depends=[]; }; + domir = derive2 { name="domir"; version="1.2.0"; sha256="0jqbigk1kd0b2n9y0q7cavh8f73ydii4fnp7w4msiy39nmpkn08k"; depends=[]; }; donut = derive2 { name="donut"; version="1.0.3"; sha256="1vrarv850dja286s5l8y0fng7idai9rqr156z67zrwx347bdr4n2"; depends=[]; }; + donutsk = derive2 { name="donutsk"; version="0.1.1"; sha256="1mmpxdjhyl06wwkcmczbai0j9pll01sh7zc4vl70mbvk6yx9khfg"; depends=[dplyr ggplot2 glue rlang]; }; + doofa = derive2 { name="doofa"; version="1.0"; sha256="0pwy27jhmabmpd617pjdw46l7gcy8dz0w37if5901kfsc0cr27kc"; depends=[combinat lpSolve]; }; doolkit = derive2 { name="doolkit"; version="1.42.2"; sha256="0hyqbpnhzjsx7ml0z6n9z60yhp5c0dyicm3jfc841aykvb1ifqbp"; depends=[concaveman ggplot2 igraph MASS Morpho rgl Rvcg sp tis usethis]; }; doremi = derive2 { name="doremi"; version="1.0.0"; sha256="005kp6f4jh8y1ykhri3mjnvc9w66b1a51bji574rkbxd1ans6mal"; depends=[data_table deSolve futile_logger ggplot2 gridExtra lme4 lmerTest zoo]; }; doseSens = derive2 { name="doseSens"; version="0.1.0"; sha256="1srxxfadxsrxpd2ksn59ilmijw5iifjik3mz9q38rsvjdxqls5d6"; depends=[dplyr gtools]; }; @@ -9137,20 +9298,21 @@ in with self; { dotprofile = derive2 { name="dotprofile"; version="0.0.1"; sha256="10vm8s1sk4i2930zzswgwy1y873x8byfr7xfb8xq6cdk9ci7l741"; depends=[cli R6]; }; dots = derive2 { name="dots"; version="0.0.2"; sha256="0g4wvb6qp66dm0pfckjr9xgij58dzlji2iq45m5cz98jzivfd9gm"; depends=[dplyr ggplot2 magrittr purrr rlang rmapshaper sf sp terra]; }; dotsViolin = derive2 { name="dotsViolin"; version="0.0.1"; sha256="0pyxs899429qsyhnm1n36n06wxwrk1i20qd9pyz62n4n6x706ajq"; depends=[dplyr ggplot2 gridExtra gtools lazyeval magrittr rlang scales stringr tidyr tidyselect]; }; - dotwhisker = derive2 { name="dotwhisker"; version="0.8.1"; sha256="0q9vdsmn9chwn4midc8apy2dx5sj89nwd8banly2ifyhpks0h8xy"; depends=[dplyr ggplot2 ggstance gridExtra gtable margins parameters patchwork performance purrr rlang stringr]; }; + dotwhisker = derive2 { name="dotwhisker"; version="0.8.2"; sha256="1hry5c2w6y5h0il5plj2mp3gmlzjq0cw6klbmlh0ka56nv9b9bcg"; depends=[dplyr ggplot2 ggstance gridExtra gtable parameters patchwork performance purrr rlang stringr]; }; doubcens = derive2 { name="doubcens"; version="1.1"; sha256="1hn65n67by3xqbcnaf5jja5pli0g6wpbbz2sfzd7i2nms7kiywhp"; depends=[]; }; + doublIn = derive2 { name="doublIn"; version="0.1.0"; sha256="04y1kq6f39kjp7i8hr52a93103nf2dpvkj34w4s0fvaqmw1h44b3"; depends=[coda dplyr DT epicontacts flexsurv ggplot2 lubridate magrittr mStats plotly rjags shiny shinydashboard shinythemes shinyWidgets tidyverse visNetwork xtable]; }; double_truncation = derive2 { name="double.truncation"; version="1.7"; sha256="0hrb1qli7i4jhc705rb02zbq2nyk0i406bb8gpy4jrzygjjbq3g0"; depends=[]; }; doubt = derive2 { name="doubt"; version="0.1.0"; sha256="16avp0f7ks2zd4ckakvfm57zng2jk0fg3fz6vbm05lzhqymh6y30"; depends=[unglue]; }; doudpackage = derive2 { name="doudpackage"; version="2.1.0"; sha256="02zr80ps7x5bq388px9jfpf3b5krvba63ydrsi9big2v5x73hfv9"; depends=[dplyr kableExtra purrr stringi tibble tidyr]; }; - downlit = derive2 { name="downlit"; version="0.4.3"; sha256="1gdk6rj3539vnm979spd8py0rpvlaniyiy336abi39g8xjcbw3vc"; depends=[brio desc digest evaluate fansi memoise rlang vctrs withr yaml]; }; + downlit = derive2 { name="downlit"; version="0.4.4"; sha256="0a7q90623ahcadqg0b3a0qylachq7nghf50f0v0lip2axvf7ghsm"; depends=[brio desc digest evaluate fansi memoise rlang vctrs withr yaml]; }; downloader = derive2 { name="downloader"; version="0.4"; sha256="1axggnsc27zzgr7snf41j3zd1vp3nfpmq4zj4d01axc709dyg40q"; depends=[digest]; }; downloadthis = derive2 { name="downloadthis"; version="0.3.3"; sha256="14c85cradmm187jzwf3njgshmzq53xr4dla39dkxmhnw07mgdw4l"; depends=[base64enc bsplus fs ggplot2 htmltools magrittr mime readr writexl zip]; }; downscale = derive2 { name="downscale"; version="5.0.0"; sha256="1rcmn5f30l004rp8a7pmn0w5izsy31n9lwsk3sgj01fjzk0333wc"; depends=[cubature minpack_lm Rmpfr sf terra]; }; downsize = derive2 { name="downsize"; version="0.2.3"; sha256="0yx62nx5ga835ng9gwrkwivxjhjrkygdldnd1hswc6wnvfs1qz8s"; depends=[magrittr R_utils]; }; - dowser = derive2 { name="dowser"; version="2.1.0"; sha256="1wv3x2aiqdmkf2jsgnphg1nwh3643jv756qb2llaz0nd4dy0kws7"; depends=[alakazam ape Biostrings dplyr ggplot2 ggtree gridExtra markdown phangorn phylotate RColorBrewer rlang shazam stringr tidyr tidyselect]; }; + dowser = derive2 { name="dowser"; version="2.2.0"; sha256="05fjca2zfa66fq360swywmncjxz7pvjp0d5h7a0axinvy9wiccg6"; depends=[alakazam ape Biostrings dplyr ggplot2 ggtree gridExtra markdown phangorn phylotate RColorBrewer rlang shazam stringr tidyr tidyselect]; }; dparser = derive2 { name="dparser"; version="1.3.1-11"; sha256="1xb4gfqcb4598wry3i1mfp9a3rjy74z2wy3ga9daaam155vcdbp8"; depends=[digest]; }; dpcc = derive2 { name="dpcc"; version="1.0.0"; sha256="1f4c68bvkwg82k1zanjhqqika2bfjv83mbr2khl5lhvfjwvpi1m0"; depends=[Rcpp]; }; - dplR = derive2 { name="dplR"; version="1.7.6"; sha256="0p2mld1hymxn7gij4hx62r03kchvnyfcc27ckgdgznznihbf185z"; depends=[boot digest lattice Matrix matrixStats plyr png R_utils signal stringi stringr XML]; }; + dplR = derive2 { name="dplR"; version="1.7.7"; sha256="1gdjrpa0x6clafiybqcc7119i350k2hx34j5ksgljwr7lb9a8d8f"; depends=[boot digest lattice Matrix matrixStats png R_utils signal stringi stringr XML]; }; dplyr = derive2 { name="dplyr"; version="1.1.4"; sha256="1jsq8pj12bngy66xms486j8a65wxvyqs944q9rxkiaylsla08wyg"; depends=[cli generics glue lifecycle magrittr pillar R6 rlang tibble tidyselect vctrs]; }; dplyrAssist = derive2 { name="dplyrAssist"; version="0.1.0"; sha256="1lqizh70b1apyr4578917gv6s0i7p84ak96a57kvwipmh36a4ywn"; depends=[DT magrittr miniUI plyr rstudioapi shiny shinyAce shinyWidgets stringr tidyr tidyverse]; }; dpm = derive2 { name="dpm"; version="1.2.0"; sha256="1wg492r19rd1hplq6ccngwr0z615m4yx5jln0v01gbz4pm47dpmi"; depends=[crayon dplyr Formula jtools lavaan panelr rlang stringr]; }; @@ -9158,14 +9320,14 @@ in with self; { dppmix = derive2 { name="dppmix"; version="0.1.1"; sha256="1gq51kix0jln25gr6bffzdy24fhn6cd3gmyl3jlmvqvni4vwswy7"; depends=[mvtnorm]; }; dprop = derive2 { name="dprop"; version="0.1.0"; sha256="0fvghjblm6giq72qqn20qwlw4ki9lrxagsy0jjbiinf51rdrhc8y"; depends=[extraDistr VaRES]; }; dpseg = derive2 { name="dpseg"; version="0.1.1"; sha256="19k7w6ln72qriwxdjx9a9cxpxbkqqja69r17zpwxz6qkw60ly4z9"; depends=[Rcpp]; }; - dqrng = derive2 { name="dqrng"; version="0.3.2"; sha256="171y7487flla0vqxmzvf9nls7vn046vplcgzvyiva3d418hwl0nd"; depends=[BH Rcpp sitmo]; }; + dqrng = derive2 { name="dqrng"; version="0.4.1"; sha256="13r8agil10q0phzwh1vlsrwv7i15k43mc93iphw2ag0c08szk79x"; depends=[BH Rcpp sitmo]; }; dr = derive2 { name="dr"; version="3.0.10"; sha256="0dmz4h7biwrn480i66f6jm3c6p4pjvfv24pw1aixvab2vcdkqlnf"; depends=[MASS]; }; dr4pl = derive2 { name="dr4pl"; version="2.0.0"; sha256="1nmy8mxxrmwzw826wvnn4rrm64xal9jr160yqiqj41zmb241q4b6"; depends=[generics ggplot2 glue Matrix Rdpack rlang tensor]; }; dracor = derive2 { name="dracor"; version="0.2.6"; sha256="1zs7xfjdx3anrvslfkx483k0swac7rq8y7n7gaws6ap94qy4xrk8"; depends=[Rcpp]; }; dragonking = derive2 { name="dragonking"; version="0.1.0"; sha256="01b01wd1s2b8sa9f0kfbf2pbzhaqra7xxskigqh3vlj389xqm1id"; depends=[]; }; dragracer = derive2 { name="dragracer"; version="0.1.7"; sha256="0ka3p72c3brrla7dawm4anyr073kgiy39ip5bdig9888gwiwjccq"; depends=[]; }; dragulaR = derive2 { name="dragulaR"; version="0.3.1"; sha256="1cw5v7m1b4pxsizsjb3zdzhydxj577p6q5fcjklsvpzmiixzlyav"; depends=[htmlwidgets shiny shinyjs]; }; - drake = derive2 { name="drake"; version="7.13.9"; sha256="1yi4d09s51lf0j1xb9c8799zx7bn844rl945n0qdd7rva514yspx"; depends=[base64url digest igraph rlang storr tidyselect txtq vctrs]; }; + drake = derive2 { name="drake"; version="7.13.10"; sha256="1nd8vqlc2hzxlh8vlqjvgls3gc2ya8vmx7nyci5g1nib1l07gxrq"; depends=[base64url digest igraph rlang storr tidyselect txtq vctrs]; }; drape = derive2 { name="drape"; version="0.0.1"; sha256="0y4y6vvskizghqf78d1vr0skac0ks3yb83m9fgn8i3wmgqrhws19"; depends=[]; }; drat = derive2 { name="drat"; version="0.2.4"; sha256="13v7dj2688ix6j9nzhvf8q9ynfihwzkppfdjkis6q1r5m4nikya3"; depends=[]; }; draw = derive2 { name="draw"; version="1.0.0"; sha256="0kbz8rcgygl4fhmljzaan5jl7wjvfljcaykm7q9lw9s6m78p06gz"; depends=[]; }; @@ -9174,6 +9336,7 @@ in with self; { drc = derive2 { name="drc"; version="3.0-1"; sha256="0c8xn8ripzq270hy8d16fcnx02l02alddznd7fqwk3jyi6113h1y"; depends=[car gtools MASS multcomp plotrix scales]; }; drcSeedGerm = derive2 { name="drcSeedGerm"; version="1.0.1"; sha256="19fyfw5r994l5sbfrh8ar4kqc27j0pgdks1cp7liql6dw5iliyp4"; depends=[dplyr drc drcte mvtnorm plyr survival]; }; drcarlate = derive2 { name="drcarlate"; version="1.2.0"; sha256="05yfyjkxrayz9cmlk7qnbcqgjfxnbkmc2wkbarr9l8m47zzhda8n"; depends=[glmnet MASS pracma purrr splus2R stringr]; }; + drclust = derive2 { name="drclust"; version="0.1"; sha256="04qi123vdj33dfhgxmwc0c2viwa74lr4x1kj85rgbvvsqhwnp1kz"; depends=[cluster factoextra fpc pheatmap Rcpp RcppArmadillo]; }; drcte = derive2 { name="drcte"; version="1.0.30"; sha256="0gpzpmk5v1lr03gl710kp4d4ldfskjr5s66wcl00abg3kz8jpixn"; depends=[dplyr drc lmtest MASS mclust multcomp nor1mix plyr sandwich survival tidyr]; }; drda = derive2 { name="drda"; version="2.0.3"; sha256="1s3d0hpxl47rirsig5gbs0q3i6dj2hjzza3655381fla5n0yx9ap"; depends=[]; }; dreamer = derive2 { name="dreamer"; version="3.1.0"; sha256="10yvdg5nkw4nawy9hdqyrsgh01xga8l3hn3qi1sbjzniv7903v7d"; depends=[coda dplyr ellipsis ggplot2 purrr rjags rlang rootSolve tidyr tidyselect]; }; @@ -9199,22 +9362,21 @@ in with self; { ds4psy = derive2 { name="ds4psy"; version="1.0.0"; sha256="1l5qqcpzad2nnhzzcb43slgmdg08v830l5np8mc7qh4wlig1x95l"; depends=[ggplot2 unikn]; }; dsa = derive2 { name="dsa"; version="1.0.12"; sha256="16lqqm0lcgpkzkj7d0akamzap85aj4dyj5rs5fkb5b9bjqa5r4c5"; depends=[dygraphs forecast ggplot2 gridExtra htmlwidgets R2HTML reshape2 rJava seastests timeDate tsoutliers xts zoo]; }; dsample = derive2 { name="dsample"; version="0.91.3.4"; sha256="1f34gp5qic70fnv2ds3v9jk08ginbk9ivxddcvdaadr249lvln12"; depends=[MASS mnormt]; }; - dsb = derive2 { name="dsb"; version="1.0.3"; sha256="1xzhd4q04c1vql49r6m4zskpx7f5hkl5hmdgr3gsbxb73xfs51v2"; depends=[limma magrittr mclust]; }; - dscore = derive2 { name="dscore"; version="1.8.0"; sha256="0dyhhrdkca0091nk0a70ckk9187g5rfzz1bqw666hv40yzq0sk97"; depends=[dplyr Rcpp RcppArmadillo stringr tidyr tidyselect]; }; + dsb = derive2 { name="dsb"; version="1.0.4"; sha256="16y0l3nmg88ihsr03f5n151jirypf7pxy6q0cgx2vpmdnqynlh61"; depends=[limma magrittr mclust]; }; + dscore = derive2 { name="dscore"; version="1.9.0"; sha256="1skcmd2fh8s5d5qdj661niwa3cfd01i22kxxcf84awad0p1p8g57"; depends=[dplyr Rcpp RcppArmadillo stringi tidyr]; }; dsdp = derive2 { name="dsdp"; version="0.1.1"; sha256="0n0cyqzwv97wqq8m8a3qr6bg2p07ky9dm6hmlxwd2ggxrn3kmxv8"; depends=[ggplot2 rlang]; }; - dsem = derive2 { name="dsem"; version="1.1.0"; sha256="12zls470an7zf9h8anab2fadg93s1rp9zh8krpxpwlp1djxgaxdx"; depends=[igraph Matrix RcppEigen sem TMB]; }; - dsfa = derive2 { name="dsfa"; version="2.0.2"; sha256="1fsq3ydphgi9b97fr92y2d5fc34rf4raff6ki1d3aqn210h9d53z"; depends=[copula gratia mgcv Rcpp RcppArmadillo Rdpack]; }; + dsem = derive2 { name="dsem"; version="1.2.1"; sha256="08k4h81zm3clzxr0lff7kxbfgnn66jzh0x5bm1jv9ag08p67392i"; depends=[igraph Matrix RcppEigen sem TMB]; }; dsims = derive2 { name="dsims"; version="1.0.4"; sha256="0mqnpcs9bijkc0l6x6qssr527rh4j4ignlgvgrqxqgii3ikdx92j"; depends=[Distance dplyr dssd ggplot2 gridExtra mgcv mrds purrr rlang rstudioapi sf]; }; dslabs = derive2 { name="dslabs"; version="0.8.0"; sha256="19nx8jjjadwhkk4wp3lv7xddq8pbj6l405xaxk4fhvgcvlxa65zk"; depends=[ggplot2]; }; dslice = derive2 { name="dslice"; version="1.2.2"; sha256="0h34bnji7ll2zh79d1yilj908mjgf27yify2kl2gapj9k499zc2v"; depends=[ggplot2 Rcpp scales]; }; dsm = derive2 { name="dsm"; version="2.3.3"; sha256="159hlllbp4qy5dxmxgsjcl2ksflq7z7v1ra5d7piyanm9c632q8a"; depends=[ggplot2 mgcv mrds nlme numDeriv plyr statmod]; }; - dsmSearch = derive2 { name="dsmSearch"; version="1.0.0"; sha256="19r5d61bc4n434sxnndp0nf318pj420skghkiadipbmf2j871h69"; depends=[dplyr httr2 imager lidR sf sp terra]; }; + dsmSearch = derive2 { name="dsmSearch"; version="1.0.1"; sha256="04phbkav0ryj62aqghmlrraai419qlfd03f0as248s1hmwig5xg2"; depends=[dplyr httr2 imager lidR sf sp terra]; }; dsmisc = derive2 { name="dsmisc"; version="0.3.3"; sha256="19760hcb5154rayhj72r48r7glh2qyaf178zkxplywmsw338kws4"; depends=[Rcpp stringr]; }; dsmmR = derive2 { name="dsmmR"; version="1.0.2"; sha256="05hbwdycbz58mn01xl6958w03z4adjb00bgl1f9sqbhgy4x23397"; depends=[DiscreteWeibull]; }; dsos = derive2 { name="dsos"; version="0.1.2"; sha256="1qv44wj1dvng1m4lkscn9yylhxsr8ck46wv54vjy9px4g7rmjaq5"; depends=[data_table future_apply ggplot2 scales simctest]; }; dsrTest = derive2 { name="dsrTest"; version="1.0.0"; sha256="1nfwcab6p7swki8d2j2dywj93xidkjqcq84majvq90yabx353jd3"; depends=[asht exactci loglognorm]; }; dssd = derive2 { name="dssd"; version="1.0.2"; sha256="1nbr8mdva6g7p9mrbbg6g116vrvny07yvkyklgjbw79vrj7lfgy3"; depends=[ggplot2 sf]; }; - dst = derive2 { name="dst"; version="1.5.2"; sha256="1ivbc6k3ynl7ikc1yddxykqrgzz7dazf6bc71xllsh9x16fy8dqk"; depends=[]; }; + dst = derive2 { name="dst"; version="1.7.0"; sha256="1l3bc2pn092wawf11dmjyv67c280c4p9j3maillc10mpaxav5k99"; depends=[dplyr ggplot2 Matrix rlang tidyr]; }; dstabledist = derive2 { name="dstabledist"; version="0.1.0"; sha256="07nvsv0xb6wv0yl7ia7sgm6ysi4w2714pjyqhbzl76mp4c7cx7cd"; depends=[Rdpack stabledist]; }; dstat = derive2 { name="dstat"; version="1.0.4"; sha256="023jp0xdbg200ww1gnr3fzgjqd82acag0jps7q6j6m27q11psvgz"; depends=[]; }; dstat2x2xk = derive2 { name="dstat2x2xk"; version="0.2.0"; sha256="16qbczzjzhmsby8d2sf1xnijiczlk29xazbgl98jbfpmpfzn4q6j"; depends=[BiasedUrn]; }; @@ -9233,22 +9395,21 @@ in with self; { dtw = derive2 { name="dtw"; version="1.23-1"; sha256="0vc2is1hf1g0sw92kzl8mddck264qwiqgm5q2wkcwwz65fss7mkf"; depends=[proxy]; }; dtwclust = derive2 { name="dtwclust"; version="5.5.12"; sha256="19dmy9jalwp2vcfkzm58g5wf4nmp3290rrsa51prw8xrjj0hk1g3"; depends=[clue cluster dplyr dtw flexclust foreach ggplot2 ggrepel Matrix proxy Rcpp RcppArmadillo RcppParallel RcppThread reshape2 RSpectra shiny shinyjs]; }; dual = derive2 { name="dual"; version="0.0.5"; sha256="08r2qz5rvsc3pjrc8rsks6r39w52n621mfg77yfnk4lc1vqn4y8d"; depends=[]; }; - dual_spls = derive2 { name="dual.spls"; version="0.1.4"; sha256="1ap4wngcakfr7q5jji63zlmbz3xw02chbqj4kwg9v9g0bq90y7k4"; depends=[pdist]; }; dualScale = derive2 { name="dualScale"; version="1.0.0"; sha256="0dw8vknkvb9qzmxw2xmwnpa1dlrqhx70j32q6dm5j1sxjyw2zx37"; depends=[eba ff ggplot2 ggrepel glue Matrix matrixcalc RColorBrewer]; }; dualtrees = derive2 { name="dualtrees"; version="0.1.5"; sha256="02zwfvz4vb8ppyjggkn5483p7b12l3ah1swpgc7g3p94ii5hr0vy"; depends=[]; }; duawranglr = derive2 { name="duawranglr"; version="0.6.7"; sha256="0hxmvyl81xlp3vv1w7462cjfa9hdz5lki0p5pn0ik7dv5aap3wbq"; depends=[digest dplyr haven readr readxl]; }; dub = derive2 { name="dub"; version="0.2.0"; sha256="066lzyk44380mf17vx4db4a3a4rs7zl85mj5hjg172khjbqnbixw"; depends=[]; }; - duckdb = derive2 { name="duckdb"; version="0.10.0"; sha256="17hr7knbqwn9gxkaga37mxl7g3vf6fmwcmvacyh3q493bfjqq5d5"; depends=[DBI]; }; + duckdb = derive2 { name="duckdb"; version="1.0.0"; sha256="08hcrbfcf76d7dbgngzz48l07ahzkf9vkb236h06mw9k820dlzm5"; depends=[DBI]; }; duckdbfs = derive2 { name="duckdbfs"; version="0.0.4"; sha256="0d23ji2pwg5xmqj584174194yh4sn74skqjmz2s1vzzgpprazclh"; depends=[DBI dbplyr dplyr duckdb fs glue]; }; duckduckr = derive2 { name="duckduckr"; version="1.0.0"; sha256="1wki8xvqp5hr27iafd9jbryl9faywfkdkpn0pa0afywbic39k2cm"; depends=[crul jsonlite]; }; - duckplyr = derive2 { name="duckplyr"; version="0.3.2"; sha256="025364w08mwjcl03lnw9jdy21bzirr5znygwkl8py30faipq2mj8"; depends=[cli collections DBI dplyr duckdb glue jsonlite lifecycle rlang tibble tidyselect vctrs]; }; + duckplyr = derive2 { name="duckplyr"; version="0.4.0"; sha256="00fdpf9kgzcic0wf43xzh56mdscf0vds91s1anayqjaq9b8g58dn"; depends=[cli collections DBI dplyr duckdb glue jsonlite lifecycle rlang tibble tidyselect vctrs]; }; duke = derive2 { name="duke"; version="0.0.3"; sha256="04z7vcgdljp47grn1ppdj4acfs3gq7xmghyzj96wq1aisnh0777b"; depends=[ggplot2 scales]; }; dumbbell = derive2 { name="dumbbell"; version="0.1"; sha256="0v0b4wbfskvcnzx10z9v4rf3mq8ccswz63pd6i1z7mggnwv38ps5"; depends=[data_table dplyr ggplot2 rlang rstatix tidyr tidyverse]; }; dummy = derive2 { name="dummy"; version="0.1.3"; sha256="081a5h33gw6ym4isy91h6mcf247c2vsdygv9ll07a3mgjcjnk79p"; depends=[]; }; dundermifflin = derive2 { name="dundermifflin"; version="0.1.1"; sha256="0rp8p4ln92kfxkczl7vi9r2jhxb1ky203s02940cjjkczsphpcc1"; depends=[crayon stringi]; }; dunlin = derive2 { name="dunlin"; version="0.1.7"; sha256="10xfps9b2dxw4w6c5z5djsp7ssz1rnpccvnai471r1zppyv14hy7"; depends=[checkmate dplyr forcats glue magrittr rlang stringr tibble yaml]; }; - dunn_test = derive2 { name="dunn.test"; version="1.3.5"; sha256="0lqwvyl3pyygfc73nf81gzw3zl3w43r7ki0yw2dgrzhkpb2iji4a"; depends=[]; }; - dupNodes = derive2 { name="dupNodes"; version="0.2.0"; sha256="18ccg83nsj7s12x6ri3ig7qh4ag6xjv72c9ix2pqakmzl640717r"; depends=[igraph Rdpack]; }; + dunn_test = derive2 { name="dunn.test"; version="1.3.6"; sha256="0z3qyq0lnflmsx41dbkr5lwgiqf3z8rn5wy54c93fwmahva0lqs9"; depends=[]; }; + dupNodes = derive2 { name="dupNodes"; version="0.3.0"; sha256="1697pcr27lix8vf1krq6vdby8dk53h0s14gcng1y5rdngrxav9nk"; depends=[igraph Rdpack]; }; dupiR = derive2 { name="dupiR"; version="1.2.1"; sha256="14krgg9fh63nyi3rchmrlggw7rykylc6b52cih87rl09x9zlgq17"; depends=[plotrix]; }; dupree = derive2 { name="dupree"; version="0.3.0"; sha256="0q8c0z1yhym20rhfjrc8n03gk458z0n8axx013rcwk1vc2zwk670"; depends=[dplyr lintr magrittr purrr rlang stringdist tibble]; }; dvir = derive2 { name="dvir"; version="3.2.1"; sha256="09fcqhzy53bfkzlff2jpq76d9sygj6vcs85k70n06p633ldvayap"; depends=[forrel pedprobr pedtools ribd]; }; @@ -9276,7 +9437,7 @@ in with self; { dynamic = derive2 { name="dynamic"; version="1.1.0"; sha256="15jxly44rj2x79jvps2ln0hrm1384p56yll9jk96w1vhaf3gbsxm"; depends=[dplyr ggplot2 lavaan magrittr patchwork purrr simstandard stringr tibble tidyr]; }; dynamicSDM = derive2 { name="dynamicSDM"; version="1.3.3"; sha256="08kv5bp8yqlrxxlr4fz4zzzcgh3sc6y9dg934gh97p5vxmwjravq"; depends=[dplyr googledrive lubridate magrittr readr reticulate rgee sf terra tidyr]; }; dynamicTreeCut = derive2 { name="dynamicTreeCut"; version="1.63-1"; sha256="1fadbql7g5r2vvlkr89nlrjxwp4yx4xrdqmv077qvmnx9vv0f4w3"; depends=[]; }; - dynamite = derive2 { name="dynamite"; version="1.4.9"; sha256="0azbknsxca7cgwvlnayfm5xdwa84swjd864i4c5lsmv5qnsshm6w"; depends=[checkmate cli data_table ggplot2 glue loo patchwork posterior rlang rstan tibble]; }; + dynamite = derive2 { name="dynamite"; version="1.5.2"; sha256="1gbhrswczs1lb7qwv2wgiapl5xax2z5indfmzvq8f4d45cd4wn2v"; depends=[checkmate cli data_table ggforce ggplot2 glue loo patchwork posterior rlang rstan tibble]; }; dynatop = derive2 { name="dynatop"; version="0.2.3"; sha256="06wp8ld22k3r76imsj8wkrpplmbdlgbl71p94ddglwp8yfq1igsp"; depends=[R6 Rcpp xts zoo]; }; dynatopGIS = derive2 { name="dynatopGIS"; version="0.2.5"; sha256="1sv519dc7fs6zrwnyggkzrcy866a6pgag0shk6rr6cd3xa1blwpv"; depends=[jsonlite R6 terra]; }; dyncomp = derive2 { name="dyncomp"; version="0.0.2-1"; sha256="13wp2k8nbgrbrqng2dmgy0ixgidk51wq9y7mv5pdbvdajxdsyh11"; depends=[zoo]; }; @@ -9301,7 +9462,7 @@ in with self; { eCAR = derive2 { name="eCAR"; version="0.1.2"; sha256="1ps98abmdv8xf8xsnif95yg8z8564nlysv8vncp3cl5wc03pknhl"; depends=[Matrix]; }; eCV = derive2 { name="eCV"; version="0.0.2"; sha256="12p20sfz5q16n24fjz7z5bv54wf20z6lp9gn6fvrilfy9w18as1k"; depends=[future future_apply idr mvtnorm]; }; eChem = derive2 { name="eChem"; version="1.0.0"; sha256="0wmf204hqd4s5har5l9bkcbrbmbqbb8m11w2aivi2gs98f3hy51p"; depends=[animation plot3D]; }; - eDITH = derive2 { name="eDITH"; version="0.2.0"; sha256="152kzwhbir37hjjjipqlvn63dwnhaq6wy0lgrks00byc9ahzh4m0"; depends=[BayesianTools DHARMa fields LaplacesDemon OCNet Rcpp rivnet terra]; }; + eDITH = derive2 { name="eDITH"; version="1.0.0"; sha256="0bsy0mpacwjglyp7vfqz32lpyd43yj346yvxqrf32fhwqlpfwimc"; depends=[BayesianTools DHARMa fields LaplacesDemon OCNet Rcpp rivnet terra]; }; eDMA = derive2 { name="eDMA"; version="1.5-3"; sha256="0wyp81si6lcispqng4c7lii22qbyblvijgnlxvcsnkcxj5hpm76j"; depends=[Rcpp RcppArmadillo xts zoo]; }; eFRED = derive2 { name="eFRED"; version="0.1.0"; sha256="1sqhcwxbi2gxgznz0z3iyvllalq9qwm18bc60dr6y2wvcilagsiy"; depends=[httr jsonlite]; }; eGST = derive2 { name="eGST"; version="1.0.0"; sha256="0qi4vg0pwy55js9ww1cw85ssim3x7s2p98cjijxvlrvid8sns5bq"; depends=[MASS matrixStats mvtnorm purrr]; }; @@ -9348,15 +9509,15 @@ in with self; { easypower = derive2 { name="easypower"; version="1.0.2"; sha256="1w2wkbrvxky6ivi51xmwwl66nfr8ckz34s9vrmq6djx80zbdrmjr"; depends=[pwr]; }; easyr = derive2 { name="easyr"; version="0.5-11"; sha256="1wzc21n2f7i7idd2hs5s0sh46gpgl6sf4wmrmhi0wc6jcc4sb5rk"; depends=[data_table digest dplyr foreign glue Hmisc lubridate readxl rlang rprojroot stringr XML]; }; easyreg = derive2 { name="easyreg"; version="4.0"; sha256="1w4wlhziyhdyldm0zgnm73fnxrh0fv8hwcw5j8ircxb4npx7bcgg"; depends=[nlme]; }; - easystats = derive2 { name="easystats"; version="0.7.0"; sha256="1flk1x1szn8hp8yhp9dxcd8xfdnnny6acpbb2mkh5lc6ydv0ayw5"; depends=[bayestestR correlation datawizard effectsize insight modelbased parameters performance report see]; }; + easystats = derive2 { name="easystats"; version="0.7.2"; sha256="0rfqzi5s0xxz30nii2ahr4hrymmkcx4spla7sdklkidvvrsrmsvc"; depends=[bayestestR correlation datawizard effectsize insight modelbased parameters performance report see]; }; eat = derive2 { name="eat"; version="0.1.4"; sha256="1s286b6wx0d59n2v3hf6s1zy1f15mwf6ssrpwciard3giccnf556"; depends=[conflicted dplyr ggparty ggplot2 ggrepel lpSolveAPI partykit Rdpack reshape2]; }; eatATA = derive2 { name="eatATA"; version="1.1.2"; sha256="0ak9722mgy9fgpk43wppgisfxj6v4fzc8qwk4cmd760sq5gw3j88"; depends=[lpSolve mathjaxr Matrix Rglpk]; }; eatDB = derive2 { name="eatDB"; version="0.5.0"; sha256="0lym1g411ykb2vzi5yr570lmyh30br667wkm5dvnvfs7bsmk05il"; depends=[DBI RSQLite]; }; eatGADS = derive2 { name="eatGADS"; version="1.1.0"; sha256="10d9np84zb5jrak03iq72imj02c55jag121hf4g0yfpplaqnc85q"; depends=[data_table eatDB eatTools haven hms plyr stringi tibble]; }; eatRep = derive2 { name="eatRep"; version="0.14.7"; sha256="11yz0g83ngzab8gqi2mq4s28j7yvl06jf4clwb8vfjqa7lwpfcgq"; depends=[BIFIEsurvey boot car combinat eatGADS eatTools EffectLiteR estimatr fmsb Hmisc janitor lavaan lme4 mice miceadds msm plyr progress reshape2 survey tidyr]; }; - eatTools = derive2 { name="eatTools"; version="0.7.5"; sha256="1wn3m3h49j59gvzsnd12m15lwfgrbf6my8xpsij29vmni9p9w6nx"; depends=[data_table]; }; + eatTools = derive2 { name="eatTools"; version="0.7.6"; sha256="0l9ip4y2b18qmb760xmjx174c7pp8crqmwiq7plark82q6p7ybfw"; depends=[checkmate data_table stringi]; }; ebGenotyping = derive2 { name="ebGenotyping"; version="2.0.1"; sha256="1jllzc7kvvckrws8qhgvwy626llyb68sp1davp7swx48sf7rwcxc"; depends=[]; }; - ebTobit = derive2 { name="ebTobit"; version="1.0.1"; sha256="0sx7blkv3i37qwmbjyrd5z18ya6xkashplx8rz0c38ldkfbk1r2s"; depends=[Rcpp RcppArmadillo RcppParallel]; }; + ebTobit = derive2 { name="ebTobit"; version="1.0.2"; sha256="0vvi6q6ml4as3yr1lc6xldinha34jgswvmnwxc6maidw3zirk51m"; depends=[Rcpp RcppArmadillo RcppParallel]; }; eba = derive2 { name="eba"; version="1.10-0"; sha256="03jr54xq109x9bf8kcs8mi7am17l9ya3xdkdppd8imwd2paqrssk"; depends=[nlme psychotools]; }; ebal = derive2 { name="ebal"; version="0.1-8"; sha256="06hkk0fargzhzqn841c406r72y7jd53mjxgi4hzb2ahnpaiq2q1l"; depends=[]; }; ebci = derive2 { name="ebci"; version="1.0.0"; sha256="00fa2y4ha9nlbjd01qckrrn721s63ja61n5jr4wm7ac6y7xivb2i"; depends=[]; }; @@ -9366,16 +9527,16 @@ in with self; { ebmstate = derive2 { name="ebmstate"; version="0.1.4"; sha256="1jbkzf7zn844jg10cy9kv3v569n82718iqaz7id4jfbcq31p7l8v"; depends=[HDInterval mstate Rcpp survival]; }; ebnm = derive2 { name="ebnm"; version="1.1-2"; sha256="14ql990pgwwb8aakg4ikj7p3ijbfaqjrsvrrjwlma3halqs3cy19"; depends=[ashr deconvolveR dplyr ggplot2 horseshoe magrittr mixsqp rlang truncnorm trust]; }; ebreg = derive2 { name="ebreg"; version="0.1.3"; sha256="1xrs9afjd5hkdmhglj3md5i5hm7awlcdlccz3y2lw4c73lx31ywz"; depends=[lars Rdpack]; }; - ebvcube = derive2 { name="ebvcube"; version="0.1.7"; sha256="15yhc8q0cnkw37amm5nq806jrmm9f9iayddzjnvv8mvaijf5ia52"; depends=[checkmate curl DelayedArray ggplot2 HDF5Array httr jsonlite memuse ncdf4 ncmeta reshape2 rhdf5 stringr terra tidyterra withr]; }; + ebvcube = derive2 { name="ebvcube"; version="0.2.1"; sha256="1dx75sf60ifg1cld7n65imzs0lm2w4f5613qzrr76pf5zfpxq61p"; depends=[checkmate curl DelayedArray ggplot2 HDF5Array httr jsonlite memuse ncdf4 ncmeta reshape2 rhdf5 stringr terra tidyterra withr]; }; ec50estimator = derive2 { name="ec50estimator"; version="0.1.0"; sha256="1zg4p1734q2jzifzfi2lf9wz3687s3cdn0yzkiwbc6w49mgdw877"; depends=[dplyr drc magrittr tibble tidyr]; }; ecan = derive2 { name="ecan"; version="0.2.1"; sha256="12bkgmbm6mbqcjhmanlg7zk0nlgqf8m1b4m7f2wcxsl8nbks8ymd"; depends=[cluster dendextend dplyr ggplot2 jsonlite labdsv magrittr MASS purrr rlang stringr tibble tidyr vegan]; }; ecb = derive2 { name="ecb"; version="0.4.2"; sha256="19ir0ywbzwyx90mgxqk9byb63afic2fvhrhy174di0pmj522vnr4"; depends=[curl httr rsdmx xml2]; }; - ecce = derive2 { name="ecce"; version="2.0.6"; sha256="185b6vdf5fqfm6xfg1h90gglicy3p73pk6mqfpp8n4sbywydqd31"; depends=[curl digest httr jsonlite uuid]; }; + ecce = derive2 { name="ecce"; version="3.0.1"; sha256="09zyrjld16byc8fs76b46hh6p2saybq00y28gfmflhzb5fhc34a2"; depends=[curl digest httr jsonlite uuid]; }; ecdfHT = derive2 { name="ecdfHT"; version="0.1.1"; sha256="1n3n9n86pj8c54l3xvp7knvi0ajbnjmz9pi79p7wfq92a90fqx48"; depends=[rgl]; }; ecespa = derive2 { name="ecespa"; version="1.1-17"; sha256="1n96nxb8spyi914m21yybb2yajawz22fmjldbr9j76dl7s36ygcd"; depends=[spatstat spatstat_explore spatstat_geom spatstat_model spatstat_random]; }; ech = derive2 { name="ech"; version="0.1.3"; sha256="092djklyw9j5cjbkndb1jby2mn896y93yrysrg704dfcjd04yv2g"; depends=[assertthat curl dplyr fs geouy glue haven janitor labelled laeken rlang srvyr statar stringr survey tidyr]; }; echarts4r = derive2 { name="echarts4r"; version="0.4.5"; sha256="1j7ad6p0xrfwri13px1av5whd7pkfvblnms0v5a879ikzdwff66q"; depends=[broom corrplot countrycode dplyr htmltools htmlwidgets jsonlite purrr rstudioapi scales shiny]; }; - echarty = derive2 { name="echarty"; version="1.6.3"; sha256="0qw555xq4lig4ni0mb9lzqyvs5g5a7rzrplm4zk3xlx8xjlkixjb"; depends=[data_tree dplyr htmlwidgets]; }; + echarty = derive2 { name="echarty"; version="1.6.4"; sha256="1rwb2y3wz8jismj9wjkq6q5wm0mxfpsbgr79ryayv1fjwhbl5faa"; depends=[data_tree dplyr htmlwidgets]; }; echelon = derive2 { name="echelon"; version="0.2.0"; sha256="179s8s8wgii89676s98pb4rhh3ikdspavl3aifc5pl12an4hc5gr"; depends=[]; }; echo = derive2 { name="echo"; version="0.1.0"; sha256="1m3dzdgkl6v9z0wv3ws1yn58zi6bxgdy3p6a5jmq2rwhb8wz1lr8"; depends=[]; }; echo_find = derive2 { name="echo.find"; version="4.0.1"; sha256="1nadqqpxgx2ck16nzjp5ajm6714452qzllg5cq1jpisv1yb31db2"; depends=[boot minpack_lm]; }; @@ -9389,7 +9550,7 @@ in with self; { ecmwfr = derive2 { name="ecmwfr"; version="1.5.0"; sha256="0bicldir8cmfd25wzmqhcawv94q2xmqwbzsqbk08w9y8x6yhxhic"; depends=[curl getPass httr keyring memoise R6 uuid]; }; ecoCopula = derive2 { name="ecoCopula"; version="1.0.2"; sha256="1j3n9h7rm66r8vmzzhy5mjh36gs1qnsh7rq33ymjpkkfy698gbpm"; depends=[betareg doParallel foreach glasso glm2 igraph MASS mgcv mvabund ordinal plyr sna tweedie]; }; ecocbo = derive2 { name="ecocbo"; version="0.10.2"; sha256="003fdvlzalga0s968mznaa7i32v5v4ppw9n0dknqw0xh53fcg5zf"; depends=[doParallel foreach ggplot2 ggpubr sampling vegan]; }; - ecochange = derive2 { name="ecochange"; version="2.9.3.1"; sha256="1dr7a0qi6rf6vrqr4pbrkif5hvdjp5gyz5mk996mbqb939hpxbsg"; depends=[geodata getPass ggplot2 httr landscapemetrics lattice raster rasterDT rasterVis rlang sf sp tibble]; }; + ecochange = derive2 { name="ecochange"; version="2.9.3.2"; sha256="0rrls354f45r7x5lrj3qk0pk02brjsndallhpfhxs3l5bsgg8d54"; depends=[getPass ggplot2 httr landscapemetrics lattice raster rasterDT rasterVis rlang sf sp tibble]; }; ecocomDP = derive2 { name="ecocomDP"; version="1.3.1"; sha256="0gvqrcan27hsykwshvs76v5gh79bmlbmsmfhxk0yrpnwh2qrbl03"; depends=[data_table dplyr EML emld geosphere ggplot2 httr lubridate magrittr neonOS neonUtilities RColorBrewer rlang rmarkdown stringr tidyr uuid xml2]; }; ecodist = derive2 { name="ecodist"; version="2.1.3"; sha256="161xyjx004aqx1l64fd6wqz7m3fqq61ijc4k00dx2lkifanpx8p0"; depends=[igraph]; }; ecolMod = derive2 { name="ecolMod"; version="1.2.6.4"; sha256="1kbllyh986468182q28g0hhyf2y58lcqd0wc7izi0fcw3ww2xyh6"; depends=[deSolve diagram rootSolve shape]; }; @@ -9402,12 +9563,12 @@ in with self; { econullnetr = derive2 { name="econullnetr"; version="0.2.1"; sha256="0kdzkk8mlnc71a6n80hgrclwns66zyhr183ad4ifz8b146xh5cl9"; depends=[bipartite gtools reshape2]; }; ecopower = derive2 { name="ecopower"; version="0.2.0"; sha256="0vlvdlpxvbjrgwffqjyvfxns0sscrpbvkjcd5v67ngfpnl1bjw5a"; depends=[ecoCopula mvabund]; }; ecoreg = derive2 { name="ecoreg"; version="0.2.4"; sha256="09iyzl4d68angcrqifpl62y4y4flhib34g8wgq2xxaggmbhvyzwa"; depends=[]; }; - ecoregime = derive2 { name="ecoregime"; version="0.1.3"; sha256="1y44zsqhk5va1pcj5865bjk5wi20r2xk0gd49lf13i7sjav7fss4"; depends=[ape data_table ecotraj GDAtools shape smacof stringr]; }; + ecoregime = derive2 { name="ecoregime"; version="0.2.0"; sha256="0f54y3q81ji4vaah6hplhl4jvzxw4lf0gg9sh0zvgq8ca43i4rkn"; depends=[ape data_table ecotraj shape smacof stringr]; }; ecorest = derive2 { name="ecorest"; version="1.0.0"; sha256="13x95z99yqld1fvfgzbm6ahrnvfvcqwlb23yjr187yg83iynh79v"; depends=[viridis]; }; ecos = derive2 { name="ecos"; version="0.1.6"; sha256="1syqh2ivznz5swify1gc34m1iqgnp10rhk7b8giil7fwdzifalfj"; depends=[httr jsonlite stringr XML]; }; ecosim = derive2 { name="ecosim"; version="1.3-4"; sha256="0v17iqrlm62vckglxkn3a617q4300pb40wdnyn4vpkxgiav9s86f"; depends=[deSolve stoichcalc]; }; ecospace = derive2 { name="ecospace"; version="1.4.2"; sha256="0vfaf27bv687ypxg5apzv63rl495rxyflqw33j17i4h0s7cjkgrm"; depends=[FD]; }; - ecospat = derive2 { name="ecospat"; version="4.0.0"; sha256="0m3rdyx70q5am654islrz0m3sniwfvlss99bj1yjhx49i54pdh38"; depends=[ade4 adehabitatHR adehabitatMA biomod2 classInt dismo ecodist foreach gbm gtools Hmisc ks matrixStats nabor poibin PresenceAbsence terra vegan]; }; + ecospat = derive2 { name="ecospat"; version="4.1.0"; sha256="1sxvbzdrdr5dda1ds7i669rkaxngp93dpdzqkip07dv28yvjhp02"; depends=[ade4 adehabitatHR adehabitatMA biomod2 classInt dismo ecodist foreach gbm gtools Hmisc ks matrixStats nabor poibin PresenceAbsence terra vegan]; }; ecostats = derive2 { name="ecostats"; version="1.1.11"; sha256="11h5s196aap64jch1123srbwy3907cvc4vgh0lvn5wkxbszrzypc"; depends=[ecoCopula GET MASS mgcv mvabund mvtnorm]; }; ecostatscale = derive2 { name="ecostatscale"; version="1.1"; sha256="040y610c1v7l5phy8lmimafjh466s1zdhk81cfcarwhf0l1hzzpr"; depends=[deSolve mvtnorm]; }; ecotox = derive2 { name="ecotox"; version="1.4.4"; sha256="01sc2lf2kca7wqqyd3gk48va39gb7ijzgs2smgb2k4xbzjqndg08"; depends=[tibble]; }; @@ -9435,12 +9596,12 @@ in with self; { edgebundle = derive2 { name="edgebundle"; version="0.4.2"; sha256="138cdhk3p95vh5siwwp05kir6kkrvqjlgbz97dgi149i6jmq656k"; depends=[igraph interp Rcpp reticulate]; }; edgebundleR = derive2 { name="edgebundleR"; version="0.1.4"; sha256="0pajr95qqppk2m4l7rfi46rll32z8a7lmq0vmb3p8n0aks5ajn1n"; depends=[htmlwidgets igraph rjson shiny]; }; edgedata = derive2 { name="edgedata"; version="0.2.0"; sha256="11sc7x0m00yhn2c4601dpjv3brmf57i8barsl3p7bawcvka8z5lr"; depends=[]; }; - edibble = derive2 { name="edibble"; version="1.1.0"; sha256="01d6d5vv8i2hrx8nw7mv248v562fsr1p1jn6kqsxh7qcx5angnp6"; depends=[AlgDesign cli dae lifecycle magrittr nestr pillar R6 rlang tibble tidyselect vctrs]; }; + edibble = derive2 { name="edibble"; version="1.1.1"; sha256="1c2ifx4yilrq8ivdhl30cq8wix539wfg9l71m4bdz4isq2gg3hw4"; depends=[AlgDesign cli dae dplyr lifecycle magrittr nestr pillar R6 rlang tibble tidyselect vctrs]; }; ediblecity = derive2 { name="ediblecity"; version="0.2.1"; sha256="0ps6ing20bkaj1rjf63d1k5cc3mrymf5hf0mkdp3qq1ghn05s6la"; depends=[dplyr magrittr rlang sf stars]; }; edina = derive2 { name="edina"; version="0.1.1"; sha256="1lpmidyxi54byrsnwwadkh5rr454635xrwa4v2wz8mqr2hngxis3"; depends=[ggplot2 jjb Rcpp RcppArmadillo reshape2 rgen]; }; editData = derive2 { name="editData"; version="0.1.8"; sha256="170i8p264zj716h58bb6pvgh2lnz1w5vplnrcv8vizppi0n1js6l"; depends=[dplyr DT magrittr miniUI openxlsx rio rstudioapi shiny shinyWidgets tibble]; }; - editbl = derive2 { name="editbl"; version="1.0.3"; sha256="1z9sz6k92n51519g0bywmxnrn4yfadvzib6dcqbrzar9qfjhyv2m"; depends=[dplyr DT fontawesome shiny shinyjs tibble uuid]; }; - editrules = derive2 { name="editrules"; version="2.9.3"; sha256="07j8wj0fk34irqgsz70h2wad3wdjv5xl1cl702vxbr0nvmpw2ngl"; depends=[igraph lpSolveAPI]; }; + editbl = derive2 { name="editbl"; version="1.0.5"; sha256="07nf808xlj3vh7nfv5rpx3d6jk7pdsygc31z25gi504mmda1y1hd"; depends=[dplyr DT fontawesome shiny shinyjs tibble uuid]; }; + editrules = derive2 { name="editrules"; version="2.9.5"; sha256="16mna3wcr81b2k5kjbz84zgvcvn9avwi4gasnbk5crxjvd74wsj1"; depends=[igraph lpSolveAPI]; }; edl = derive2 { name="edl"; version="1.1"; sha256="19p0qr9lm0kdinh4qnqx7bzxkbvcfpp6mbddwh0hgsgqkbw916cp"; depends=[data_table plotfunctions]; }; edlibR = derive2 { name="edlibR"; version="1.0.2"; sha256="0pncj573n95g6vnjnyihhac94qxq63p15lxy1xy7pd2p63p5hs4f"; depends=[Rcpp stringr]; }; edmcr = derive2 { name="edmcr"; version="0.2.0"; sha256="06ms8zyygkgq3divall8paiiw5blqxfgml8iy339zfyiwfxabw5a"; depends=[igraph lbfgs MASS Matrix nloptr sdpt3r truncnorm vegan]; }; @@ -9463,11 +9624,10 @@ in with self; { effClust = derive2 { name="effClust"; version="0.8.0"; sha256="1lnlmzwa5g1djs1i4vk2jx6rd0b45hs9n9lfkbpnn69s0lgj7rys"; depends=[fixest]; }; effectR = derive2 { name="effectR"; version="1.0.2"; sha256="1icr1sx98x3h8rbky1agdh809arhjqcypyajl7y50yis8a5pkycb"; depends=[ggplot2 reshape2 rmarkdown seqinr shiny viridis]; }; effects = derive2 { name="effects"; version="4.2-2"; sha256="0nlj79am9a1yg737dhfa8dj1kj2hly9pfknmphsbcvlgxqn35vig"; depends=[carData colorspace estimability insight lattice lme4 nnet survey]; }; - effectsize = derive2 { name="effectsize"; version="0.8.6"; sha256="0gdk6f2713k2vhv7qa6dgxl6kgc6r6yb12hb27k4bbibj5njvvni"; depends=[bayestestR datawizard insight parameters performance]; }; + effectsize = derive2 { name="effectsize"; version="0.8.8"; sha256="1dx83xv98iny4pzphrr64fv277k70cgmia1s18bh7fix2h3md45k"; depends=[bayestestR datawizard insight parameters performance]; }; effectsizescr = derive2 { name="effectsizescr"; version="0.1.0"; sha256="0shfjk6r3bz04jakrn5nwgymjx60lk83i0akcx7zqfxp3k8yncs5"; depends=[Kendall]; }; efflog = derive2 { name="efflog"; version="1.0"; sha256="1sfmq7xrr6psa6hwi05m44prjcpixnrl7la03k33n0bksj8r1w6b"; depends=[]; }; effsize = derive2 { name="effsize"; version="0.8.1"; sha256="1m5ch2g77f4ldbxhzp2ls1pga8hq7ggkz1xs8a90h0s09rj0gd7w"; depends=[]; }; - efreadr = derive2 { name="efreadr"; version="0.2.2"; sha256="1h27by1m451wrnw017005avs5yj3fjzrm2lq5153aqm1mbbxxwvs"; depends=[dplyr ensurer magrittr readr]; }; ega = derive2 { name="ega"; version="2.0.0"; sha256="04kwh24aap22yclmcrix3vi553qb30hd43mgfzpdl0cw3ibrh7xg"; depends=[ggplot2 mgcv]; }; egcm = derive2 { name="egcm"; version="1.0.13"; sha256="16mzhf7x19v9z600n29q4481dmsjfcn55365zbb9d0wrclc3053l"; depends=[ggplot2 MASS pracma quantmod tseries urca xts zoo]; }; egg = derive2 { name="egg"; version="0.4.5"; sha256="1fy7srpiavfn8kyrr1m84an7acgwi6ydzrg71m3b0vk7y9ybmj0m"; depends=[ggplot2 gridExtra gtable]; }; @@ -9477,13 +9637,15 @@ in with self; { eha = derive2 { name="eha"; version="2.11.4"; sha256="147i34fipb0qbamvs45918ci2nihvbsxvbqd8k7wv73rmgb1nw5v"; depends=[survival]; }; ehaGoF = derive2 { name="ehaGoF"; version="0.1.1"; sha256="15hpzj3ridl6w3pd5z86d88cc88jw09qpqhsdwkar4dby8lgxhi0"; depends=[]; }; ehelp = derive2 { name="ehelp"; version="1.2.1"; sha256="1kqd6mzzcf2b0hslpm2zvxyi3i4vhzxsmvdmfqgrs6703n1dx62g"; depends=[]; }; + ehymet = derive2 { name="ehymet"; version="0.1.0"; sha256="1ywsv8dlkp9fpvfgdpv27yjpa2wyzfx0bq6cb7fbd90b89j59lpp"; depends=[kernlab tf]; }; ei = derive2 { name="ei"; version="1.3-3"; sha256="0i8pvpal23zwsqldhmm3iis4vw9s08mlydpshaig2dsd9549gn11"; depends=[cubature eiPack ellipse foreach MASS mnormt msm mvtnorm plotrix sp tmvtnorm ucminf]; }; ei_Datasets = derive2 { name="ei.Datasets"; version="0.0.1-3"; sha256="1ii9dnjxbjvzp0ihg499fvwqzgdwdcp2xxnqfqz319d805hajcpr"; depends=[tibble]; }; eiCircles = derive2 { name="eiCircles"; version="0.0.1-7"; sha256="11id675g2j36xq8c1fmsbh7djbcdgbyvq0hrnhahsmiy1nnrxncd"; depends=[NlcOptim]; }; eiExpand = derive2 { name="eiExpand"; version="1.0.5"; sha256="1x30np4liy33mkb31040b2mk3yqajp4v0b2n32akm07f8sn3zrxh"; depends=[dplyr ggmap ggplot2 magrittr rlang sf stringr tidyr tidyselect viridis]; }; eiPack = derive2 { name="eiPack"; version="0.2-2"; sha256="1jb7nxk71cyvrmapzwz4fgjv7ca5m17i22acyhx27krl168ss0r2"; depends=[coda MASS msm]; }; - eia = derive2 { name="eia"; version="0.4.1"; sha256="188vprgj7lzzs7z3qa2pq8lhhsg8h389frxnq1dr295jqzwrwvis"; depends=[httr jsonlite lubridate memoise purrr readxl tibble]; }; + eia = derive2 { name="eia"; version="0.4.2"; sha256="13r06wxg2byz71q1k6m5bgrdjb86c8lgrdbmhkxiifyihwpwnqdz"; depends=[httr jsonlite lubridate memoise tibble]; }; eicm = derive2 { name="eicm"; version="1.0.3"; sha256="0439ngwr8m7inljn8303g2a9v3izw81jz1jqxgbp6xdnvlwwpsyx"; depends=[doSNOW foreach GA iterators optimParallel pso snow ucminf]; }; + eider = derive2 { name="eider"; version="1.0.0"; sha256="03sz9r2s6klrfigj16pnwgi1qj2sshfdays0mrfc0ic6b60armyj"; depends=[dplyr fs jsonlite logger lubridate magrittr purrr rlang stringr tibble]; }; eigenmodel = derive2 { name="eigenmodel"; version="1.11"; sha256="1l3n0z736xf3x6cyxzmmq1jb2glxi2b75z7v39y4471knh6nbb4d"; depends=[]; }; eikosograms = derive2 { name="eikosograms"; version="0.1.1"; sha256="13s5wqcc8iwnhn3msrh9dfrvq9bwlby93p9v5wcnrm8m9iskax1s"; depends=[plyr]; }; eimpute = derive2 { name="eimpute"; version="0.2.3"; sha256="02zsz7hrcfypvpkvjyzfmwxpbr03chj2qcqmxkn3dr3zffwp93fq"; depends=[Rcpp RcppEigen]; }; @@ -9494,8 +9656,7 @@ in with self; { eive = derive2 { name="eive"; version="3.1.3"; sha256="1ziijc43axgsm9j61saab7q4kqysqwx3gvl710lv7m57vll6k4zl"; depends=[Rcpp]; }; eivtools = derive2 { name="eivtools"; version="0.1-8"; sha256="0ynmrql6dv10m7cwba5mzwlbvp6ab53nzqqvk3ihwyiqzmnnmpk4"; depends=[R2jags]; }; eixport = derive2 { name="eixport"; version="0.6.0"; sha256="18jybscxh051h5y31gb7ywr9n5a471l6krcl95wznfvc2ba1k8pc"; depends=[cptcity data_table ncdf4 raster sf]; }; - eks = derive2 { name="eks"; version="1.0.4"; sha256="14nyd2ipjy5kvcp3001ld7dv2k46paxg20w7dnq17sg8wy8iy4rd"; depends=[dplyr ggplot2 isoband ks mapsf sf]; }; - elaborator = derive2 { name="elaborator"; version="1.1"; sha256="1kq3qqqywpzrk1ichsljvfijhsybmj7s0scmswmwi2crqi67gzp8"; depends=[bsplus dendextend dplyr forcats haven purrr RColorBrewer reshape2 rlang seriation shape shiny shinydashboard shinyWidgets tidyr]; }; + eks = derive2 { name="eks"; version="1.0.5"; sha256="11hg9zqb5j2dswj7lx6ah2xfrxdak8xxdwml7xzkf9m3d36xjgha"; depends=[dplyr ggplot2 isoband ks mapsf sf]; }; elasdics = derive2 { name="elasdics"; version="1.1.3"; sha256="03zfklxnh66kzlkw5yf8p859hkfhbvh5pgmi9lcwy0izi32sjx86"; depends=[numDeriv]; }; elasso = derive2 { name="elasso"; version="1.1"; sha256="0nz3vw803dvk4s45zc9swyrkjwna94z84dn4vfj3j17h74a0cij2"; depends=[glmnet SiZer]; }; elastes = derive2 { name="elastes"; version="0.1.7"; sha256="0sa95g6wcl3m8aygpg9ip1p3q8hwcin8mglzbl3mc9bvdfwkplsa"; depends=[elasdics mgcv orthogonalsplinebasis sparseFLMM]; }; @@ -9526,29 +9687,30 @@ in with self; { elsa = derive2 { name="elsa"; version="1.1-28"; sha256="01sj2a4yhv5m6qj6ih26zw4yzd8s27lll7yp0yysjjrwz79a0fbq"; depends=[raster sp]; }; eltr = derive2 { name="eltr"; version="0.1.0"; sha256="0f4sy2hhsbghasl5xcnqlgxqhb503pl73c5vdkgpcm73smrqbpbv"; depends=[data_table]; }; em = derive2 { name="em"; version="1.0.0"; sha256="16xmksz1zdr61gxycsbia28kj16nrrcdvjcdd3nk6n6zjiy3ca3v"; depends=[dplyr magrittr mclust nnet numDeriv plm Rcpp RcppArmadillo survival]; }; - emBayes = derive2 { name="emBayes"; version="0.1.4"; sha256="18j50i0px9wgv9w5h015k276ia9ls5fjlj9gvjp6l3b3nr5nr2xq"; depends=[glmnet Rcpp RcppArmadillo]; }; + emBayes = derive2 { name="emBayes"; version="0.1.5"; sha256="1ycr91r0zh75whpf4l9hxrm07rks589bmy994nby88r5yrv34wwg"; depends=[glmnet Rcpp RcppArmadillo]; }; emailjsr = derive2 { name="emailjsr"; version="0.0.2"; sha256="1pxqw0r95pgpnvhmyw46py6bnchswb9wcyl42lsg5ccz74dynmh0"; depends=[httr shiny shiny_i18n shinybrowser]; }; emailvalidation = derive2 { name="emailvalidation"; version="0.1.0"; sha256="1k2i2rnlqzgi7kn2knll86bax4pms68jddrycaqv6pkql8fja93a"; depends=[httr jsonlite]; }; - emayili = derive2 { name="emayili"; version="0.7.18"; sha256="0q38lkvp2298jkwlfr6b90ikvkzf31d2v56pdfxz2xf1qmf5p7b2"; depends=[base64enc commonmark curl digest dplyr glue htmltools httr logger magrittr mime purrr rmarkdown rvest stringi stringr tidyr urltools xfun xml2]; }; + emayili = derive2 { name="emayili"; version="0.8.0"; sha256="0cpg77w8z1j05mqkkji7hqpan8p1kq6l1r07iwpsany0y5di0mlf"; depends=[base64enc commonmark curl digest dplyr glue htmltools httr logger magrittr mime purrr rmarkdown rvest stringi stringr tidyr urltools xfun xml2]; }; embed = derive2 { name="embed"; version="1.1.4"; sha256="1mc4rh1mp81j4613s82z45zz0y12bkpg5kjjkx12i85nh953y1x1"; depends=[dplyr generics glue lifecycle purrr recipes rlang rsample tibble tidyr uwot vctrs withr]; }; embryogrowth = derive2 { name="embryogrowth"; version="9.1"; sha256="0c7ggpa2i9j17zzknx9h5w6sibk5pdy81484gl6sb5s88wmn16qm"; depends=[deSolve HelpersMG numDeriv optimx]; }; emdbook = derive2 { name="emdbook"; version="1.3.13"; sha256="069w10i1590bcyzv4kfsg7wsr1yl9nlsyj6yvys088xll5z4n116"; depends=[bbmle coda lattice MASS plyr]; }; - emdi = derive2 { name="emdi"; version="2.2.1"; sha256="0wx8mrq07nl1djf7fcb0xg9vx64i9d3p6v7lyr1bb8hvqs47qc7g"; depends=[boot formula_tools ggplot2 gridExtra HLMdiag MASS moments MuMIn nlme openxlsx parallelMap readODS reshape2 rlang saeRobust spdep stringr]; }; + emdi = derive2 { name="emdi"; version="2.2.2"; sha256="1zdb2bg8gdpjlg104f5cpnrrdnpdqdcp95gxlbnadq6rds94ipcx"; depends=[boot formula_tools ggplot2 gridExtra HLMdiag MASS moments nlme openxlsx parallelMap readODS reshape2 rlang saeRobust spdep stringr]; }; emdist = derive2 { name="emdist"; version="0.3-3"; sha256="0jmnz612pjad3p1zk0qiljcbf0zbxfi4zcw2jqwg8ncjsifhr3mp"; depends=[]; }; emery = derive2 { name="emery"; version="0.5.1"; sha256="1x0x1f2i0yxkq8xl6vm2w2nb8blpa6dkns07d1n9qj43rnwljv5s"; depends=[dplyr ggplot2 mvtnorm purrr Rdpack stringr tibble tidyr]; }; emg = derive2 { name="emg"; version="1.0.9"; sha256="04sm05xnjns7wcvpk35ywkxy6g0mm84r060mkmzh64wq58c2q06l"; depends=[moments]; }; emhawkes = derive2 { name="emhawkes"; version="0.9.7"; sha256="0zhy1y80m548y9nbbjb2h795qky2637mxlqb548bakn7ps847qps"; depends=[maxLik]; }; emld = derive2 { name="emld"; version="0.5.1"; sha256="0cvnfvzskvpcqzs6fwrpjcqrc6yrfciliy9jj0c9h4iyag0g0b9b"; depends=[jsonld jsonlite xml2 yaml]; }; - emmeans = derive2 { name="emmeans"; version="1.10.0"; sha256="1vq7abyirrrpx00d464pgva2i17f3wxx08f4rc23bl331s3lsx23"; depends=[estimability mvtnorm numDeriv]; }; + emmeans = derive2 { name="emmeans"; version="1.10.2"; sha256="08l57dp6ivqqc86m31vabr0n707vr70n4iqidavn05lxgb169gk0"; depends=[estimability mvtnorm numDeriv]; }; emoa = derive2 { name="emoa"; version="0.5-2"; sha256="1a71xd8gdy27cfy09a4avjhc7d7idrljzan79cxb8qwb0pq9pvz9"; depends=[]; }; emoji = derive2 { name="emoji"; version="15.0"; sha256="1xscypzz17a7nrajnl7isy2nrm9cyr97l0mi9vp0daqvzgyfajba"; depends=[glue stringr tibble]; }; emojifont = derive2 { name="emojifont"; version="0.5.5"; sha256="1hhrwilv36hd9gs1kcl2zsi6519md0h9aixjrm6lfclxvz8r6k1i"; depends=[ggplot2 proto showtext sysfonts]; }; emon = derive2 { name="emon"; version="1.3.2"; sha256="19khjjpyxvzhzihqq15w02l5v5ryyvxlklz1ch2gkmqcpnvyga32"; depends=[MASS mgcv]; }; emov = derive2 { name="emov"; version="0.1.1"; sha256="04w0bjyxvfb4ky573byp7j9b7x4gqycr5pgpnsl6rzag00zsf45a"; depends=[]; }; + emphatic = derive2 { name="emphatic"; version="0.1.8"; sha256="0v9h8q9l1zk9b23x9raqv9p93cvrnjijqphfz7px719zhi8104q5"; depends=[]; }; empichar = derive2 { name="empichar"; version="1.0.1"; sha256="0az7qxfnqrmxgd2591h49qs1w7iyzz6i490h4xn9gdzsplhpy1sw"; depends=[Rcpp RcppArmadillo]; }; emplik = derive2 { name="emplik"; version="1.3-1"; sha256="1f6v0bg9sl8kn4y8bpgjyc1b18xkmfbs86gbbmbh198v335lgcrb"; depends=[quantreg]; }; emplik2 = derive2 { name="emplik2"; version="1.32"; sha256="0d4fzyxa7kynxgx8187vqxnb25kv1m1pkawxdpng6nfaiy76w67m"; depends=[]; }; - emplikAUC = derive2 { name="emplikAUC"; version="0.3"; sha256="0ifh661xknqin0k9vs92p00c4n6npkwn5cxyj970cj8l689yndrr"; depends=[emplik2 rootSolve]; }; + emplikAUC = derive2 { name="emplikAUC"; version="0.4"; sha256="1pxcvz7x8dfc30m1yb1k9xhlaj4z1i29xxg9vdz1l374k4f449sb"; depends=[emplik2 rootSolve]; }; ems = derive2 { name="ems"; version="1.3.11"; sha256="0xg4c6yhrnq5pfz94i1ys1bdqfz12h0wcs86fz4nm4pqfdbh41cc"; depends=[boot rms survival]; }; emstreeR = derive2 { name="emstreeR"; version="3.1.2"; sha256="1l85pn8y463fn09cpm737kzal6k3ydiri38s90bhfw3i1gvzqggf"; depends=[ggplot2 mlpack scatterplot3d sf]; }; emuR = derive2 { name="emuR"; version="2.5.0"; sha256="0mlcqi9lwqrjilc2nynrl7aqkbqixbdcwzw3rn7mgc8m7cb7s8pq"; depends=[base64enc cli DBI dplyr httpuv httr jsonlite mime purrr readr rlang RSQLite rstudioapi shiny stringr tibble tidyr uuid V8 wrassp]; }; @@ -9567,19 +9729,17 @@ in with self; { enetLTS = derive2 { name="enetLTS"; version="1.1.0"; sha256="1lah9ai9skshz0rq3r1smvy69j443m22h1dihl42gy2568998q4v"; depends=[cvTools ggplot2 glmnet reshape robustbase robustHD]; }; english = derive2 { name="english"; version="1.2-6"; sha256="1g3nmy5p8wj3ix1vp1qmkmy3dyqisrw0md8cjrx4klqkp0wqlms9"; depends=[]; }; engression = derive2 { name="engression"; version="0.1.4"; sha256="030fcjh7cwjqiydyxjhaa7rsc2wq50ywdyp4wd2cr7glpy1fl346"; depends=[torch]; }; - enmSdmX = derive2 { name="enmSdmX"; version="1.1.2"; sha256="15pdsva011dpa72ms7c6fdhadzcm603wzglfy9hg63krirvmfwkh"; depends=[boot data_table dismo doParallel DT foreach gbm ks maxnet mgcv MuMIn omnibus ranger rJava scales sf shiny statisfactory terra]; }; + enmSdmX = derive2 { name="enmSdmX"; version="1.1.6"; sha256="0hwj7xa19inifajqbgzyxcjgi0gz49yqyfbdvgdwmh8f81i99hip"; depends=[AICcmodavg boot data_table doParallel DT foreach gbm ks maxnet mgcv omnibus predicts ranger rJava scales sf shiny sp statisfactory terra]; }; enmpa = derive2 { name="enmpa"; version="0.1.5"; sha256="0r7zr3xgx1w9570965bm13rw24647y47kab313lqb01nwd9vn2vn"; depends=[doSNOW ellipse foreach mgcv Rcpp snow terra vegan]; }; enpls = derive2 { name="enpls"; version="6.1"; sha256="12088v9xnj5b3dlakqz1hbzxz4mdai7xi7s2fpx8lj3y3lx7znmb"; depends=[doParallel foreach ggplot2 plotly pls reshape2 spls]; }; enrichR = derive2 { name="enrichR"; version="3.2"; sha256="1g97q6vqwvb2l02y61343sblarqi433gjl3qmlyxjxq2lnjrnak1"; depends=[curl ggplot2 httr rjson WriteXLS]; }; enrichwith = derive2 { name="enrichwith"; version="0.3.1"; sha256="05fhx323ani86wdxbjp8dgw4d1iq4kr1887646w072a6iq93bwhm"; depends=[]; }; ensembleBMA = derive2 { name="ensembleBMA"; version="5.1.8"; sha256="1bb2f7pkwq4dza8fkag3802yflzcsfma4cnwhfw1qgg227sfy8d9"; depends=[chron]; }; ensembleMOS = derive2 { name="ensembleMOS"; version="0.8.2"; sha256="16d8030zfdwifqrh45vz3gf5n0bix0mhsmsnydgjq1fghdklcmyx"; depends=[chron ensembleBMA evd]; }; - ensembleR = derive2 { name="ensembleR"; version="0.1.0"; sha256="0xvq1jlsp7gsk46i847nfvadxwlh09gi2rgwss2wf2xmh1855ray"; depends=[caret]; }; ensembleTax = derive2 { name="ensembleTax"; version="1.1.1"; sha256="1kxkv8b6qgrbylp16hlh53h3sr079jqhypv1fk4g5fr349zrjgv3"; depends=[Biostrings DECIPHER dplyr ggplot2 reshape2 stringr usethis]; }; ensemblepp = derive2 { name="ensemblepp"; version="1.0-0"; sha256="08k7v61p2sgr07dklabl0g7apsn9da60sfb14gfrwipwi8bsd4pv"; depends=[]; }; enshuman = derive2 { name="enshuman"; version="1.0.0"; sha256="19jni9zcrlka41d6w7264b52nyakzy52ycsy5fk93x1wavjc5miy"; depends=[]; }; ensr = derive2 { name="ensr"; version="0.1.0"; sha256="18b81iswvby7k5akbfdyc6a8j1621d4d35hxmgjip5kyvf5cb3p8"; depends=[data_table ggplot2 glmnet]; }; - ensurer = derive2 { name="ensurer"; version="1.1"; sha256="1gbbni73ayzcmzhxb88pz6xx418lqjbp37sdkggbrxcyhsxpdkid"; depends=[]; }; entropart = derive2 { name="entropart"; version="1.6-13"; sha256="1y2gdfnqz52w03g9zij07fkjhh3yf3qflk75j0bvfk7n727rz2jp"; depends=[ape EntropyEstimation ggplot2 ggpubr reshape2 rlang tibble vegan]; }; entropy = derive2 { name="entropy"; version="1.3.1"; sha256="1f0j8jsn6pzf4gi5g0akixx6x5vc69ci5f4m2vnwp40frvsqjnkg"; depends=[]; }; entrymodels = derive2 { name="entrymodels"; version="0.2.1"; sha256="0fz7jzax12pzw47iry4amgg9z4z3z94kig6r5dhcqa84kq02294v"; depends=[dplyr magrittr readr]; }; @@ -9589,7 +9749,7 @@ in with self; { envi = derive2 { name="envi"; version="0.1.19"; sha256="04hh4fgkaw8zzsjf2bzwwy3iyknfaipqd7p5icysx6il5i8hd79y"; depends=[concaveman cvAUC doFuture doRNG fields foreach future iterators pls ROCR sf sparr spatstat_geom terra]; }; enviGCMS = derive2 { name="enviGCMS"; version="0.7.1"; sha256="1rk7y24lld16zk7f3aak3zf9i3xd27l8mffcvlxwqi7cpl1pqa9b"; depends=[animation BiocParallel data_table igraph mixtools RColorBrewer Rdisop]; }; enviPat = derive2 { name="enviPat"; version="2.6"; sha256="17qrly8fb6d7gk1xcg3273mykpwc9i7ghnvipp63fwx4cp25crzw"; depends=[]; }; - envir = derive2 { name="envir"; version="0.2.2"; sha256="090s0idsdvg09gd8mjkbbfw6fvxj0mmfy3135wp5n7cjdf2qgp7n"; depends=[]; }; + envir = derive2 { name="envir"; version="0.3.0"; sha256="1jqrx6rl15kgws890klxd467431ciayp9rm5xsx7v81a7z8xyrz3"; depends=[]; }; envirem = derive2 { name="envirem"; version="3.0"; sha256="06mxzm5kg0vm34z8sx5mbxxcdicjicjjdnhx0pi61dqnrwj47jml"; depends=[knitr palinsol terra]; }; envnames = derive2 { name="envnames"; version="0.4.1"; sha256="1fkbid2x60m63dnrxrdq7im49spn8m70g1gd8nqjq3xlv642ianm"; depends=[]; }; envoutliers = derive2 { name="envoutliers"; version="1.1.0"; sha256="1wgrrkkpkmf300qb56mq6nxigwnpq551sjxlk05lk3ckawx66srf"; depends=[car changepoint ecp ismev lokern MASS robustbase]; }; @@ -9601,23 +9761,24 @@ in with self; { eoffice = derive2 { name="eoffice"; version="0.2.2"; sha256="0nxyllragxn5bq28x37vkx16vi4y9af5nly1pslqrvvarl21ics4"; depends=[broom devEMF dplyr flextable ggplot2 ggplotify htmlwidgets magick magrittr officer plotly R_devices rvg]; }; epade = derive2 { name="epade"; version="0.5.1"; sha256="05g41lslw77v8r2914vpf92348hcyfx7xqbbwknfhl1xld9rk2iz"; depends=[Hmisc plotrix survival]; }; epandist = derive2 { name="epandist"; version="1.1.1"; sha256="0hxgbjns5bk82rgcmykxifnnxcnqdzmkimkkmpdif64zr5g3gjdg"; depends=[]; }; - epanet2toolkit = derive2 { name="epanet2toolkit"; version="1.0.4"; sha256="0xmaifvj9r3q634rb9rbpvrn4klsxf14scbv8150s1s6dvvb0f5i"; depends=[]; }; + epanet2toolkit = derive2 { name="epanet2toolkit"; version="1.0.5"; sha256="0y9mk5w1ds31g7nwx4xkpay8h2h6cqbh9i2hl01zhycjdgh4ddfg"; depends=[]; }; epanetReader = derive2 { name="epanetReader"; version="0.7.3"; sha256="05pwa6z03qsjwr9pxpbxycsd21p7mf5j5ajyg4yaas5g100s1k8c"; depends=[]; }; epca = derive2 { name="epca"; version="1.1.0"; sha256="0ikncmrvcdixa209lrjb84rdsl78isi815a461i7lfmmln9myqk2"; depends=[clue GPArotation irlba Matrix]; }; epe4md = derive2 { name="epe4md"; version="0.1.4"; sha256="12arly1kcpcg0ym3rq8am7l4nchwl97vy3yp6vamc4sbv01w18a5"; depends=[assertthat dplyr fabletools feasts forcats furrr future ggplot2 janitor jrvFinance lubridate magrittr purrr readr readxl scales stringr tibble tidyr tsibble zoo]; }; eph = derive2 { name="eph"; version="1.0.0"; sha256="1gr0j5xxdmi10d4n742r9764134fsh0xxqdfz5jk5df1z16wh7g2"; depends=[attempt cli curl dplyr expss htmltools httr leaflet purrr readxl rlang stringr tibble tidyr tidyselect zoo]; }; epiCleanr = derive2 { name="epiCleanr"; version="0.2.0"; sha256="1m5qz7qkly9waj1w8x0hrz28cc4vzn6psqs4q39x1fhxlgip0rih"; depends=[countrycode crayon dplyr ggplot2 glue janitor purrr rio rlang stringr tibble tidyr tidyselect withr]; }; epiDisplay = derive2 { name="epiDisplay"; version="3.5.0.2"; sha256="0430mwnaa0qamdyvmwkh37ic0kp4hq8mr5nxkc97mhhl7djw0y92"; depends=[foreign MASS nnet survival]; }; - epiR = derive2 { name="epiR"; version="2.0.70"; sha256="10rc6w7jhwzpq6c4764nrsbkn8sn6zvz4lxxixgby88r7zvh6rlc"; depends=[BiasedUrn flextable lubridate officer pander sf survival zoo]; }; + epiR = derive2 { name="epiR"; version="2.0.75"; sha256="162px7cscy791pgfci45jh3gl3hm60v3ha088kc8vydn8cvfn4kr"; depends=[BiasedUrn flextable lubridate officer pander sf survival zoo]; }; epibasix = derive2 { name="epibasix"; version="1.5"; sha256="0ivr51x37cbdryli9b4p4iq9v2c90zwmywrwdmg7ryq5vprvvbp0"; depends=[]; }; epicasting = derive2 { name="epicasting"; version="0.1.0"; sha256="191kxjrr8h44i7a7dpxziqhbcnbmhgcc5b7ddn9cnvvjqmbwmvl2"; depends=[forecast Metrics wavelets]; }; - epicontacts = derive2 { name="epicontacts"; version="1.1.3"; sha256="0y97l288ncj0svk1gnxjr4q58rvhbn6wblm7jbhff4n4544yd4f7"; depends=[colorspace dplyr igraph threejs visNetwork]; }; + epicontacts = derive2 { name="epicontacts"; version="1.1.4"; sha256="0caf11814w2552yi4ybx5ql14kmmfjl2xa4r9mbibi71gpm0n94v"; depends=[dplyr igraph threejs visNetwork]; }; epidata = derive2 { name="epidata"; version="0.4.0"; sha256="0v3s1vrf2iqh03rkkwrlz6mhpbsbjxkayrqdx04vrnja4i9ljshk"; depends=[dplyr httr jsonlite purrr readr rvest stringi tidyr tinytest xml2]; }; epidatr = derive2 { name="epidatr"; version="1.1.1"; sha256="1qiidg3fq2ccm6l8r080fg9mwdvcnksl338z2navv9w4jq7kjwr8"; depends=[cachem checkmate cli glue httr jsonlite magrittr MMWRweek openssl purrr rappdirs readr tibble usethis xml2]; }; epidm = derive2 { name="epidm"; version="1.0.4"; sha256="0ncjfhq45gs1w0kpkpdwfs43iccl6pq8yrc2999g3r5dsiw06lyq"; depends=[data_table DBI odbc phonics purrr readr stringi stringr]; }; epifitter = derive2 { name="epifitter"; version="0.3.0"; sha256="104hl3b3951psi023hv95486ygcv9ilmqkzw96yygym7rhkaww9m"; depends=[DescTools deSolve dplyr ggplot2 knitr magrittr minpack_lm tibble tidyr]; }; epiflows = derive2 { name="epiflows"; version="0.2.1"; sha256="1d7j2w9jjscny0ax33k1wy0hcr2pn6ck491vfm327lx4jpld8pfd"; depends=[epicontacts geosphere ggmap ggplot2 htmltools leaflet sp tibble visNetwork]; }; epigraphdb = derive2 { name="epigraphdb"; version="0.2.3"; sha256="11ja2r024a4sfk6xjhwn2mj4fz2msf6jx85w3cxr2hvp9sl3zgc9"; depends=[glue httr jsonlite magrittr purrr tibble]; }; + epigrowthfit = derive2 { name="epigrowthfit"; version="0.15.2"; sha256="1wzb92baz3aw3y15fdc3r8nanjzkgshhbi57hq7x8ybdzrwn6rz8"; depends=[Matrix nlme RcppEigen TMB]; }; epikit = derive2 { name="epikit"; version="0.1.6"; sha256="1lw1hiccxw705pa9kkyc7gvyg3vggaqri4nfxhasjxhxp2wy6bfz"; depends=[binom dplyr forcats ggplot2 glue rlang scales sf tibble tidyr tidyselect]; }; epilogi = derive2 { name="epilogi"; version="1.0"; sha256="0p5aidj9xmlw6lyb4bscb7xkjkfs4jmc4ax844bhsgl6v2y91n6b"; depends=[Rfast]; }; epimdr = derive2 { name="epimdr"; version="0.6-5"; sha256="1nxdlz7gl9vrha9iw92y0s9dmm101gkz0rsqxqg1rdxanr6hs6sh"; depends=[deSolve polspline shiny]; }; @@ -9632,7 +9793,8 @@ in with self; { epitools = derive2 { name="epitools"; version="0.5-10.1"; sha256="0jqn3pas4lsans50jwakmvpyc7m7x0kxq6dzyckd3vgww56qa65l"; depends=[]; }; epitrix = derive2 { name="epitrix"; version="0.4.0"; sha256="08cz2p9xxa966a2v8kay00l3pmgfgmwzlh5pnx04s19rmar13z02"; depends=[distcrete dplyr purrr rlang sodium stringi tidyr]; }; epitweetr = derive2 { name="epitweetr"; version="2.2.16"; sha256="0xniwd6r1jyn2ifw8y4d9c3dl4maik6p4lw0nghb9z9q9xigjlak"; depends=[bit64 crul curl dplyr DT emayili future ggplot2 htmltools httpuv httr janitor jsonlite keyring knitr lifecycle magrittr openxlsx plotly plyr processx readxl rlang rmarkdown rnaturalearthdata rtweet shiny sp stringr tibble tidytext tidyverse xml2 xtable]; }; - epiworldR = derive2 { name="epiworldR"; version="0.0-4"; sha256="1p9yvxphk9kr743g9cj5yq5g1h1j094aih6nq4xd6i9lx7amfiyz"; depends=[cpp11]; }; + epiworldR = derive2 { name="epiworldR"; version="0.1-0"; sha256="0jwb4p3cpsq0m2wlmhqs1dxxvqf7s6x1fw1wrffbw93gf4j4pyx3"; depends=[cpp11]; }; + epiworldRShiny = derive2 { name="epiworldRShiny"; version="0.1-0"; sha256="0xffsvswwaxv3kcy4s9iznwmadb5r1p4darpkkplz1zvfma9sy5c"; depends=[DT epiworldR ggplot2 plotly shiny shinycssloaders shinydashboard shinyjs]; }; eplusr = derive2 { name="eplusr"; version="0.16.2"; sha256="1b9kqrma6ayzsj146fdb2w2pwzmz1r6yy9g0abhx745gll8g9gqr"; depends=[callr checkmate cli data_table lubridate processx R6 RSQLite stringi units]; }; eply = derive2 { name="eply"; version="0.1.2"; sha256="0al44pvqf6ls3dh129vlv3g56hk1nbql09rj0qsb04d9kaz9anrp"; depends=[magrittr]; }; epm = derive2 { name="epm"; version="1.1.2"; sha256="1zziy07ydrxma5qhnxha5g2zm02yi6bvw2vv3w6sanrj9p4kakav"; depends=[ape pbapply Rcpp RcppProgress sf terra viridisLite]; }; @@ -9648,13 +9810,15 @@ in with self; { epubr = derive2 { name="epubr"; version="0.6.4"; sha256="0cv1zkv27ab4h2lq8s4lgizvdrw0238lr042aw8rns27zbqz7is1"; depends=[dplyr magrittr tibble tidyr xml2 xslt]; }; epwshiftr = derive2 { name="epwshiftr"; version="0.1.4"; sha256="075yvrxyjswkx03fwns2pa7plz5hjlpjyp5xq48s7i0ya3x9x55w"; depends=[checkmate cli data_table eplusr fst future_apply jsonlite PCICt progressr psychrolib R6 rappdirs RNetCDF units]; }; epxToR = derive2 { name="epxToR"; version="0.4-1"; sha256="00m64ham9fd9dsw37ic2m62fy4pvmwfwmjx8cg6n4rwbgq9q49sg"; depends=[httr XML]; }; - eq5d = derive2 { name="eq5d"; version="0.15.2"; sha256="1bra1jbayjdpr663lacmgj8yik670y82wi3zmc0iy5vz9hssjfwi"; depends=[]; }; + eq5d = derive2 { name="eq5d"; version="0.15.3"; sha256="1rynjc0bvihkk3arrcl0s16fa9p8avddhr62k60crc4xaibhvkz6"; depends=[]; }; + eq5dsuite = derive2 { name="eq5dsuite"; version="1.0.0"; sha256="1dy52swx5mq9xs2c0c4xa01dkpzffbyydfk6h83wh7hy27ml4zr8"; depends=[dplyr ggplot2 moments rappdirs RColorBrewer rlang scales stringr tidyr]; }; equalCovs = derive2 { name="equalCovs"; version="1.0"; sha256="18w7panyd6mhdr3x1iz9fkrw7min22rishs4xhkxgxs3nnyglkrn"; depends=[]; }; equaltestMI = derive2 { name="equaltestMI"; version="0.6.1"; sha256="09wh4907vf54z3g2a1i1j4m5vkaz97jp3qyrmxbg0bbbq0c68ffg"; depends=[lavaan]; }; - equatags = derive2 { name="equatags"; version="0.2.0"; sha256="039v1lj8ydw3lji8ycklbprd569f7g0lc11sb2ij262wlr0prm1m"; depends=[katex xml2 xslt]; }; + equatags = derive2 { name="equatags"; version="0.2.1"; sha256="028mpd5idi84znlry494f96p8p178v9yccw4cxg56m1agbw391hs"; depends=[katex xml2 xslt]; }; equate = derive2 { name="equate"; version="2.0.8"; sha256="0yjgnhn1hj5rs68qn51caia4zb78hh7vipm4411ng28cn9cxzdm4"; depends=[]; }; - equateIRT = derive2 { name="equateIRT"; version="2.3.0"; sha256="18rs6n4kgbiikkljppnacd1zkv2wp8xc8ibk9xslrhshxwwr0576"; depends=[mirt statmod]; }; + equateIRT = derive2 { name="equateIRT"; version="2.4.0"; sha256="0i3bvldalqrlz9qalpylybn896nkdpm5xk4m62sxhm1bfrd0nm98"; depends=[mirt statmod]; }; equateMultiple = derive2 { name="equateMultiple"; version="0.1.2"; sha256="150srrf8msr6jzyri6632xws0g2lnj34kvj7hqrvbiwkad1aqq7m"; depends=[equateIRT numDeriv Rcpp RcppArmadillo statmod]; }; + equatiomatic = derive2 { name="equatiomatic"; version="0.3.3"; sha256="1zb8pnpdvn6159h43h4fr9sfp1fv9rgknv4wv1wra6ris204764b"; depends=[broom broom_mixed knitr shiny]; }; equil2 = derive2 { name="equil2"; version="1.0.0"; sha256="1dmd8ssgv0a0ccmk906vbx61qqdq4h033a8173i7s8c58qfz8yhb"; depends=[units]; }; equivUMP = derive2 { name="equivUMP"; version="0.1.1"; sha256="05ihbr6dd9qv89ll90ynk4g3d3xy2w5q0m696djfa63f1x92c01w"; depends=[]; }; equivalence = derive2 { name="equivalence"; version="0.7.2"; sha256="170l5gnk0dkjkfsx7qyrw56ircwsjzz9cvhakgyrqh7bj5734i79"; depends=[boot lattice PairedData]; }; @@ -9665,43 +9829,41 @@ in with self; { ercv = derive2 { name="ercv"; version="1.0.1"; sha256="0rs4yhm9sjnqkrgqqy6b8wj9fgk910hxc8d7zi4qwql0v1gid27l"; depends=[]; }; erer = derive2 { name="erer"; version="3.1"; sha256="03pdq3p5c5f20959hgk5q2cx5x10bpgf0qg4z1nvsf31vc5ni77v"; depends=[lmtest systemfit tseries urca]; }; erfe = derive2 { name="erfe"; version="0.0.1"; sha256="1v6xca2zwdg494mdb97dwg2xlqsr51919plylnl04d8dgg5adhz9"; depends=[Matrix mvtnorm]; }; - ergMargins = derive2 { name="ergMargins"; version="1.2"; sha256="0rxd7aldvkn5b106ni93gcr1501wcc759s85za1za4k11hrig0fm"; depends=[btergm dplyr ergm Matrix network numDeriv sampling sna]; }; + ergMargins = derive2 { name="ergMargins"; version="1.3"; sha256="0mr01ckxn8l8fjxlld05ag18d04h17wbnrgpry46hz38axl41zzj"; depends=[btergm dplyr ergm Matrix network numDeriv sampling sna]; }; ergm = derive2 { name="ergm"; version="4.6.0"; sha256="1xx767l4z38wkxlxwq62y4khjjsz10fsy36x0s74fnzb746acwdl"; depends=[coda knitr lpSolveAPI magrittr MASS Matrix memoise network purrr Rdpack rlang rle robustbase statnet_common stringr tibble trust]; }; - ergm_count = derive2 { name="ergm.count"; version="4.1.1"; sha256="0cj9jdxxpkgvs658nxxndd9pbxb7l52vzhipkjiimd6q99hr6s24"; depends=[ergm network statnet_common]; }; + ergm_count = derive2 { name="ergm.count"; version="4.1.2"; sha256="085h2dn9dz9i05kjdm3ysgp7lzqdniq16xrvc11b4q1g9av71klv"; depends=[ergm network Rdpack statnet_common]; }; ergm_ego = derive2 { name="ergm.ego"; version="1.1.0"; sha256="1wflvj946xkiy0xzq53x13v9iqj64hc7wcqzqazkvlngigibh5gl"; depends=[dplyr egor ergm network purrr RColorBrewer statnet_common survey tibble]; }; ergm_multi = derive2 { name="ergm.multi"; version="0.2.1"; sha256="00hrl0cz81kjfp49sc3ma4jxxxgnjc6aald2drs190ks43bx17g0"; depends=[ergm glue Matrix network purrr Rdpack rlang rle statnet_common tibble]; }; - ergm_rank = derive2 { name="ergm.rank"; version="4.1.0"; sha256="1ivwqlyx48smm9dmam9z0x6yqhmy1ypmmhzfhs5j3pq5vfwfc87c"; depends=[ergm network statnet_common]; }; + ergm_rank = derive2 { name="ergm.rank"; version="4.1.1"; sha256="059s4zdb5fm8wl130nnxww1ry57d3p6rd5zmn9pf94iisjpkxxij"; depends=[ergm network Rdpack statnet_common]; }; ergmgp = derive2 { name="ergmgp"; version="0.1-1"; sha256="0463wg1g1vd14fwgnvm8aa20vvklvpaqdv4wn6jaybmn8y7kxi16"; depends=[ergm network networkDynamic statnet_common]; }; ergmharris = derive2 { name="ergmharris"; version="1.0"; sha256="1bfijhsljlykb94wi25lbpv35zkmgqpmgzmxcq98gjvzbn5j9pdq"; depends=[]; }; ergmito = derive2 { name="ergmito"; version="0.3-1"; sha256="0djcfwxr4diwfjvim6mbz1g28bzsd94s78xw5kvn5vahiwjpdd61"; depends=[ergm MASS network Rcpp RcppArmadillo texreg]; }; erify = derive2 { name="erify"; version="0.4.0"; sha256="014q4crfa92i4fb4mrbl68ai0l8asjwwnv3l2m11gfnny41p4bks"; depends=[glue]; }; - ern = derive2 { name="ern"; version="1.3.1"; sha256="0f1nkjb1ra89rz2pz1ayyrv0x91wpzs0rhsrxj9kipl1ryd4lamn"; depends=[assertthat dplyr EpiEstim ggplot2 lubridate patchwork rjags runjags tibble tidyr zoo]; }; + ern = derive2 { name="ern"; version="2.0.0"; sha256="13hw1ji3d8dqr8al4rykg75a392w4306gmr3m2mlrwdy7rzi9pyi"; depends=[assertthat coda dplyr EpiEstim ggplot2 lubridate patchwork rjags runjags stringr tibble tidyr zoo]; }; erp_easy = derive2 { name="erp.easy"; version="1.1.0"; sha256="193n45w0rq3cy0nmxvv0h6s3yr8kfjlg90nd4dnqlsq85zlsizij"; depends=[gtools plyr signal]; }; err = derive2 { name="err"; version="0.2.0"; sha256="1915b0vmqdd8whwdrqjphld1jaxawh5b7di6wf7q3sx779lblsrs"; depends=[]; }; - errint = derive2 { name="errint"; version="1.0"; sha256="1ya7fsvwhmgxw87r32m4345n8pw2pbpv026xvml03s1kiam8qwbw"; depends=[rootSolve VGAM]; }; errorist = derive2 { name="errorist"; version="0.1.2"; sha256="195c8bbxi22l9qyhj4ndjmwhcmk2b019vxcggsp2iaas48y4v6wi"; depends=[searcher]; }; errorlocate = derive2 { name="errorlocate"; version="1.1.1"; sha256="1qml2qd63iqswb0zvnx9m3ia0zq7q20ycllhds3bwa4fwg25pfsp"; depends=[lpSolveAPI validate]; }; errors = derive2 { name="errors"; version="0.4.1"; sha256="0pyp1adhyp5kak4x9niyj3ncmda1xydsx2sfa7gjbm2fzazyslbh"; depends=[]; }; errum = derive2 { name="errum"; version="0.0.3"; sha256="18frrfnhnmg4fjlpfwj8aklzfwafpwqvagm0aschkqc8mz6wnjbz"; depends=[Rcpp RcppArmadillo]; }; es_dif = derive2 { name="es.dif"; version="1.0.2"; sha256="1swxg8mdp9jj9f0x0cawhhbx8gmmpsgqlbifx2v04a2vkgdkigqf"; depends=[]; }; esDesign = derive2 { name="esDesign"; version="1.0.3"; sha256="0lnz40d8s9pmxccsbd9g80n0k454xgicjfdpbfrq7rnyb4pdk9l2"; depends=[]; }; - esaBcv = derive2 { name="esaBcv"; version="1.2.1.1"; sha256="0d2z03jab1c59v9x0qfwbipf0zbdz7zqj96ndbs0wnpjpgrvcp1d"; depends=[corpcor svd]; }; esaddle = derive2 { name="esaddle"; version="0.0.7"; sha256="1r79qcirlx7g9w523nz81f5f22paid5dhag2lqj7jf33w0ggaknn"; depends=[doParallel mvnfast plyr Rcpp RcppArmadillo]; }; esaps = derive2 { name="esaps"; version="0.2.2"; sha256="0yys40ki5dy62fds4kfwji6qzq5mbmvqps85maqgsimal7p7gx3n"; depends=[dplyr plyr readODS readxl tidyr]; }; esback = derive2 { name="esback"; version="0.3.1"; sha256="0l2v4y2sgfyc0a6ap2ww93y44jxijnxjma16p0bsh3clrvzbvcrr"; depends=[esreg]; }; esc = derive2 { name="esc"; version="0.5.1"; sha256="0gns7gz55p6pha05413r3hlvd7f2v1amxkg13d197mab1ypqic7q"; depends=[]; }; - escalation = derive2 { name="escalation"; version="0.1.8"; sha256="14nvjrzkfr9ijn7z9absdw0d8814xm6al8lwnirdhq96jvlqh05n"; depends=[binom BOIN dfcrm DiagrammeR dplyr ggplot2 gtools magrittr mvtnorm purrr R6 RColorBrewer stringr tibble tidyr tidyselect trialr viridis]; }; + escalation = derive2 { name="escalation"; version="0.1.9"; sha256="1y25xmwf4gb5d5n6z8n06ignjkcrgffak5ca4gjw89pr05284q5q"; depends=[binom BOIN dfcrm DiagrammeR dplyr ggplot2 gtools magrittr mvtnorm purrr R6 RColorBrewer stringr testthat tibble tidyr tidyselect trialr viridis]; }; esci = derive2 { name="esci"; version="1.0.2"; sha256="0rc43xwkn1l5qxkki88d51yp3qbdw2r369f6i04r5yxa042a5kqj"; depends=[ggbeeswarm ggdist ggh4x ggplot2 ggtext glue jmvcore mathjaxr metafor multcomp R6 Rdpack rlang sadists statpsych stringr]; }; eseis = derive2 { name="eseis"; version="0.7.3"; sha256="0fn55mb6yklwjh0ihczjchxrxvnblzbifq59158zfmz407rrfk5g"; depends=[caTools colorspace extraDistr fftw IRISSeismic matrixStats minpack_lm Rcpp reticulate rmarkdown shiny signal terra XML]; }; eselect = derive2 { name="eselect"; version="1.1"; sha256="04918ping7rxb0n5fkllkcv332gwhqq2f1fqi5nrbx65k7lrjmfy"; depends=[CompAREdesign]; }; esem = derive2 { name="esem"; version="2.0.0"; sha256="035f864na44lqdya6zbivyg1advan9mrfz5c61hxkvlv63b3v8ay"; depends=[dplyr GPArotation lavaan magrittr psych rlang tibble tidyr]; }; - esemifar = derive2 { name="esemifar"; version="1.0.2"; sha256="1v6iw5r54ny08xfi0ynacl8l3jain0adplcrwma5gg5p0k799aaw"; depends=[fracdiff smoots]; }; + esemifar = derive2 { name="esemifar"; version="2.0.1"; sha256="1ypylcyyq516d9w1s920m92h7a6c6yb837720hbmx37vjjz6l4dm"; depends=[fracdiff furrr future ggplot2 Rcpp RcppArmadillo smoots]; }; eshrink = derive2 { name="eshrink"; version="0.1.2"; sha256="0min4j1dyd08i0fyn9a4iasjlhq08bn74bjz8vj1gq9l114v795k"; depends=[glmnet MASS]; }; esmisc = derive2 { name="esmisc"; version="0.0.3"; sha256="1d6xrdxwn85c8s60s7vzaymh7wa9f7fzd79hq5spzd12fr3zisvj"; depends=[ggplot2 raster readr]; }; esmprep = derive2 { name="esmprep"; version="0.2.0"; sha256="076sm26mkkvig2g04k32z2dlp2h9gnqgzckhirl4pqm01siknl61"; depends=[lubridate]; }; esmtools = derive2 { name="esmtools"; version="1.0.1"; sha256="0jrq3ccz6zv1ic7a5sqvk8h3vgrq1lkkckadsik8x1a9bnsv0qii"; depends=[base64enc dplyr DT fs ggplot2 ggpubr htmltools jsonlite kableExtra knitr lubridate stringr tidyr]; }; - espadon = derive2 { name="espadon"; version="1.6.0"; sha256="18vmaml5hxq9xwh2n7fhlfak3wdzkhwig6k2jfwrixv3yfqcwlfb"; depends=[colorspace DT igraph js mathjaxr Matrix misc3d Morpho openxlsx progress qs Rcpp Rdpack rgl Rvcg shiny shinyWidgets]; }; - esquisse = derive2 { name="esquisse"; version="1.2.0"; sha256="05c8vvdji8rcmxxahhxxsddvv9qh2naym4r67rdgicam7w7km60s"; depends=[bslib datamods ggplot2 htmltools jsonlite phosphoricons rlang rstudioapi scales shiny shinybusy shinyWidgets]; }; + espadon = derive2 { name="espadon"; version="1.7.2"; sha256="08pjzi992apgkxiwv88m0gq7i156lqz5vmlkm5lfcx8w3bjj0j3d"; depends=[colorspace DT igraph js mathjaxr Matrix misc3d Morpho openxlsx progress qs Rcpp Rdpack rgl Rvcg shiny shinyWidgets sodium]; }; + esquisse = derive2 { name="esquisse"; version="2.0.0"; sha256="0w37x5w6kvscwbr6d157ahmaigafj3ccn3zjasqazrzzlwjns3lm"; depends=[bslib datamods downlit ggplot2 htmltools jsonlite phosphoricons rlang rstudioapi scales shiny shinybusy shinyWidgets]; }; esreg = derive2 { name="esreg"; version="0.6.2"; sha256="1djyx8cc1pfza5n5ipg990jwwc1fjlsiz817iifwv9iw8g9vkda4"; depends=[Formula quantreg Rcpp RcppArmadillo]; }; ess = derive2 { name="ess"; version="1.1.2"; sha256="1cmw20nn39ssyqiyn50w0ws28mq4cd26yhzr7mv97haaqjjjkv5h"; depends=[igraph Rcpp]; }; essHist = derive2 { name="essHist"; version="1.2.2"; sha256="0rvlxfcl42h4pjqf37mx7bc4k21iwvnys6l5rf2jsl7yk1b9hmbn"; depends=[Rcpp]; }; @@ -9709,10 +9871,10 @@ in with self; { essurvey = derive2 { name="essurvey"; version="1.0.8"; sha256="1b78am4vnyg3k2hjjkjyhnjgm6rsmjwvqys030qybkgfplsbgra3"; depends=[haven httr rvest tibble xml2]; }; estadistica = derive2 { name="estadistica"; version="0.2.3"; sha256="1l5ngjqm301rr1amsqdkazf7dg7c8nd0pvwy0hrsjk0m630q1kc4"; depends=[data_table dplyr forecast ggplot2 gridExtra knitr plotly rio shiny shinydashboard tidyr]; }; estatapi = derive2 { name="estatapi"; version="0.4.0"; sha256="0wp5w9w0b832fnl7kchjqmychnf5896q50grw8hwdc1km14dfzkg"; depends=[dplyr httr purrr readr rlang tibble]; }; - estimability = derive2 { name="estimability"; version="1.5"; sha256="0s6w8vnq0jc136d2mpf6pgg45rbxccrlsgdy89pgksnbaxhmyb5k"; depends=[]; }; + estimability = derive2 { name="estimability"; version="1.5.1"; sha256="1sa42rczhzfj0dkn8v1pq6b752rh6h7x553gcgl7g27x75mbk9iw"; depends=[]; }; estimateW = derive2 { name="estimateW"; version="0.0.1"; sha256="0fgbyfnxxs6kp9p17ljvj72q5vd4xn7kwh4zbmzjx45cdq101bjv"; depends=[Matrix matrixcalc plot_matrix R6]; }; - estimators = derive2 { name="estimators"; version="0.7.3"; sha256="11aw3g85hivmid88fc13gh14jarmbpp717sqpsyisz4pvwv9zkqv"; depends=[distr ggh4x ggplot2 Matrix progress]; }; - estimatr = derive2 { name="estimatr"; version="1.0.2"; sha256="1mq1xp9ckc47d1i67dbymz968vfvy4x71y813qjy19p10sxfci66"; depends=[Formula generics Rcpp RcppEigen rlang]; }; + estimators = derive2 { name="estimators"; version="0.8.5"; sha256="16zpgscxn3f3alfi44yinacrf9222wbdg7ac1bs91bax7zn3k0zd"; depends=[extraDistr ggh4x ggplot2 Matrix progress]; }; + estimatr = derive2 { name="estimatr"; version="1.0.4"; sha256="1v9fzqp7h48lb70d2kln4wq9fl36dsxhv7871hnmggkykzax3pvc"; depends=[Formula generics Rcpp RcppEigen rlang]; }; estimraw = derive2 { name="estimraw"; version="1.0.0"; sha256="0z591mblbzc3qv9pyv8zn0r5r3d8f1l02sxdc649gl1lb40kalz0"; depends=[dplyr]; }; estmeansd = derive2 { name="estmeansd"; version="1.0.1"; sha256="0wshkcqdajysymy765d5gg9z9bxdsy59h2rw0ls19nlf0dbj4z6s"; depends=[metaBLUE]; }; estprod = derive2 { name="estprod"; version="1.2"; sha256="0pnpg8w6i1dmkcn6afj2jsm5mzvbxka80np1bldcxgmylrp5s35p"; depends=[boot Formula gmm lazyeval minpack_lm]; }; @@ -9731,8 +9893,8 @@ in with self; { eudract = derive2 { name="eudract"; version="1.0.0"; sha256="0p7524xm0yzj1yqs667n026kf7hyvvkv8z8n0avnzswhkyga3cnd"; depends=[dplyr ggplot2 httr magrittr patchwork scales tidyr xml2 xslt]; }; eufmdis_adapt = derive2 { name="eufmdis.adapt"; version="0.1.0"; sha256="0n8qj5dhc32ckbjiwvcfc904j9jilyb87x325a2vbgb35gfhf7sn"; depends=[dplyr DT ggplot2 htmltools magrittr rlang shiny shinydashboard shinyWidgets tibble tidyselect]; }; eulerian = derive2 { name="eulerian"; version="1.0"; sha256="0yhpnx9vnfly14vn1c2z009m7yipv0j59j3s826vgpczax6b48m0"; depends=[graph]; }; - eulerr = derive2 { name="eulerr"; version="7.0.1"; sha256="1c8yf94ga4h6rf89fyajxfsaq5z6dx1z2840371vxj7kwj9slg3c"; depends=[GenSA polyclip polylabelr Rcpp RcppArmadillo]; }; - eummd = derive2 { name="eummd"; version="0.1.4"; sha256="1g0h9b7d89kj7yh45flygmnc76dgjgwr8x8h1kvqq4bvgbwg51ry"; depends=[Rcpp]; }; + eulerr = derive2 { name="eulerr"; version="7.0.2"; sha256="0aw4l338nymrmna7q01vxn2cc7wyzz3lhf1bwazy55qa4hmww3af"; depends=[GenSA polyclip polylabelr Rcpp RcppArmadillo]; }; + eummd = derive2 { name="eummd"; version="0.1.9"; sha256="05c3c471picsfpkphf39wfh95vvmfmncwrnn04zizlgcp9b7z7ws"; depends=[Rcpp]; }; eunis_habitats = derive2 { name="eunis.habitats"; version="0.1.0"; sha256="1w1382bmlgj9xirrarvmsh8kymgbbfybfmbcpnh02y4lyrdav78d"; depends=[tibble]; }; eurlex = derive2 { name="eurlex"; version="0.4.7"; sha256="1arpixy6hcqdfn83rkb23s5zgvhkw1nv2hjv09k2k0g8s642y6yf"; depends=[antiword curl dplyr httr magrittr pdftools readr rlang rvest stringr tidyr xml2]; }; eurocordexr = derive2 { name="eurocordexr"; version="0.2.4"; sha256="1srn0n1imp975b3sfaz27yz1fxm8gs7h34wa6mf5xw551gm6kwwv"; depends=[data_table fs lubridate magrittr ncdf4 ncdf4_helpers PCICt]; }; @@ -9746,11 +9908,11 @@ in with self; { evabic = derive2 { name="evabic"; version="0.1.1"; sha256="0f34shsacf9lyb2hlp2f0nhqy2ihy1zqg52npx8ap2li0s4y0x24"; depends=[]; }; evalITR = derive2 { name="evalITR"; version="1.0.0"; sha256="0szrqcvi9x0wqxlyi1qyzpkj4y93qym8295nddip9ncl67kh2w09"; depends=[bartCause caret cli dplyr e1071 forcats gbm ggdist ggplot2 ggthemes glmnet grf haven MASS Matrix purrr quadprog rlang rpart rqPen scales SuperLearner]; }; evalR = derive2 { name="evalR"; version="0.0.1"; sha256="0gb9bi9kfpqv0asbrcz2kdf1grxbjipdq97jmlgbzr5rn9jski01"; depends=[Rcpp]; }; - evaluate = derive2 { name="evaluate"; version="0.23"; sha256="0p540jl6sixpgk08cp2h9470d28p7n66pfafiskvz3rba0vrrky9"; depends=[]; }; + evaluate = derive2 { name="evaluate"; version="0.24.0"; sha256="1mkzb2f8rv0qd33h3gqq7idkpxnnx7zcr93xsmbm4lp7b157cgg2"; depends=[]; }; evapoRe = derive2 { name="evapoRe"; version="1.0.0"; sha256="1a50pi9vch15cl5c3jb43slfdb7k0aa4s4pdx75va9icg738fiby"; depends=[data_table doParallel foreach lubridate pRecipe raster]; }; evclass = derive2 { name="evclass"; version="2.0.2"; sha256="0khiifgfag8a6nsznnjr7h1vj5v2nzidv0qrkxlg12i42bg3xqpj"; depends=[FNN ibelief R_utils]; }; evclust = derive2 { name="evclust"; version="2.0.3"; sha256="0z707x770rp7y3sii4w0xk61is2ib79mix14x48n942vb11mc91b"; depends=[FNN limSolve Matrix mclust plyr quadprog R_utils]; }; - evd = derive2 { name="evd"; version="2.3-6.1"; sha256="0wc95hfj0gwkyghipdrhwd3s6q2agh9x2wy6y7dr6mjw7wnmjb36"; depends=[]; }; + evd = derive2 { name="evd"; version="2.3-7"; sha256="0j2nnprzww1akin6mnj619wp6ihbd7jgbr2daj6lmgirbpqrv2aa"; depends=[]; }; evdbayes = derive2 { name="evdbayes"; version="1.1-3"; sha256="1adlwyr1csjmwcpc7jsywzggpvr3fk500hyahzy774jmgj3j09vh"; depends=[]; }; event = derive2 { name="event"; version="1.1.1"; sha256="0w3v8j61y7vr0cjl8a1rkvi4pyjlfhmzzn1n4dgkivac4iafzqjj"; depends=[rmutil]; }; eventInterval = derive2 { name="eventInterval"; version="1.3"; sha256="0nybzy2mpmazcvz06mkv7l9741mjm3i2q2sindq0777vb2k4504v"; depends=[MASS]; }; @@ -9766,7 +9928,7 @@ in with self; { evidenceFactors = derive2 { name="evidenceFactors"; version="1.8"; sha256="0g9w1q8ir6qmvk5vvbpipiyias7nj74ks2h94ja7al8sz68gralx"; depends=[sensitivitymv]; }; evident = derive2 { name="evident"; version="1.0.4"; sha256="1nffcfkny79d3f776p8j4g71cc3n991v56jwjyrg3vkgs05w13cn"; depends=[DOS2 MASS sensitivity2x2xk sensitivitymult sensitivitymv senstrat]; }; evilDice = derive2 { name="evilDice"; version="1.0"; sha256="0lx0h4iav8yazxp50a4cn3g0si3w76r9zdb6n3xbwrjrdnaf3lc6"; depends=[]; }; - evinf = derive2 { name="evinf"; version="0.8.8"; sha256="1v1g0lkabplyyv5h9cj7vnnncbgjwhx5gdy865zba27sjb8b8lrg"; depends=[doParallel doRNG dplyr foreach generics magrittr MASS mistr MLmetrics pscl purrr Rcpp RcppArmadillo Rdpack rlang stringi stringr tibble tidyr]; }; + evinf = derive2 { name="evinf"; version="0.8.10"; sha256="142rg6d3ziq5y2qscnfiasg2f27va44gjc4qh8db3z4n1nw076a5"; depends=[doParallel doRNG dplyr foreach generics magrittr MASS mistr MLmetrics pscl purrr Rcpp RcppArmadillo Rdpack rlang stringi stringr tibble tidyr]; }; evir = derive2 { name="evir"; version="1.7-4"; sha256="1h7a7z7v5k33y5hsdfczsri3vpbwspfgazhv4saknv2h11rgfpki"; depends=[]; }; evmix = derive2 { name="evmix"; version="2.12"; sha256="02rabc9snci00s1x7h0svfr66lmw1wjcdg0149wc52mnccsdaivf"; depends=[gsl MASS SparseM]; }; evoTS = derive2 { name="evoTS"; version="1.0.2"; sha256="104lb598rkm17n1as1g32va5aa285b86j4ac3wg4dxp8ckzl738d"; depends=[MASS mvtnorm paleoTS plotly pracma]; }; @@ -9776,8 +9938,8 @@ in with self; { evolvability = derive2 { name="evolvability"; version="2.0.0"; sha256="0l81d48zvvnbxlx1mj4qwga1kdzk05pzdvsp4ghi93pzzynfqn9s"; depends=[ape coda lme4 Matrix]; }; evoper = derive2 { name="evoper"; version="0.5.0"; sha256="064fcpd04ws8v6sl0bakiw34jmmfpg1w5pkq94y2gh1c576x4vwz"; depends=[boot data_table deSolve futile_logger ggplot2 plot3D plyr reshape RNetLogo rrepast]; }; evprof = derive2 { name="evprof"; version="1.1.2"; sha256="1nkgvx76cvy78pcnrfh8md2j3b9vmsissmq2s2nbb2rral272gnr"; depends=[cowplot dbscan dplyr ggplot2 jsonlite lubridate MASS mclust plotly purrr rlang tibble tidyr]; }; - evreg = derive2 { name="evreg"; version="1.0.3"; sha256="0abcs1r48jbiqwnw14yw6hqda4angl7cnl3gnlfj4jx09wpqassw"; depends=[evclust]; }; - evsim = derive2 { name="evsim"; version="1.4.0"; sha256="1qwyjm88z82b7m39rwm1989z4m4hl5wdy4qagkb3lw8hc31mhvxr"; depends=[dplyr dygraphs ggplot2 jsonlite lubridate MASS purrr rlang tidyr]; }; + evreg = derive2 { name="evreg"; version="1.1.1"; sha256="10zld5hh6qq92pmr0ajkimjjvnm8a6dhh106w6mpanfz09lvj74f"; depends=[evclust]; }; + evsim = derive2 { name="evsim"; version="1.5.0"; sha256="0v057l0qb3x16kw5xdjmw724kg9zlflagkkdvhwgc39z1by1ahbd"; depends=[dplyr dygraphs ggplot2 jsonlite lubridate MASS purrr rlang tidyr]; }; evt0 = derive2 { name="evt0"; version="1.1-4"; sha256="0hqsv72wswnmgirhwb671snmg65qb1j77pfvzaqw9mi8lmvqalpq"; depends=[evd]; }; evtclass = derive2 { name="evtclass"; version="1.0"; sha256="1ny43sry257cxlg56f0lj1szv9ci3ymskj6l5sn43l5a2pq62g4l"; depends=[evd fitdistrplus RANN]; }; evtree = derive2 { name="evtree"; version="1.0-8"; sha256="1dmzbsyrg8wwzzqcxzqmgm7yai37lh9lkjhizhr2h0k03s5xdv1k"; depends=[partykit]; }; @@ -9807,22 +9969,21 @@ in with self; { executablePackeR = derive2 { name="executablePackeR"; version="0.0.2"; sha256="1510lhcdzlss96lpmvzv8apnb774y6ayij9cdihl5sa5kzap0nbp"; depends=[automagic cli rstudioapi]; }; exif = derive2 { name="exif"; version="0.1.0"; sha256="12phqn5x1x0xs2xczl3064q983dalm261vqpyafhdcndm1y3gwbc"; depends=[Rcpp]; }; exifr = derive2 { name="exifr"; version="0.3.2"; sha256="0iqm513h7951q3hg8maf2hbprqmsm93cb3mbg3g91qawpx77494c"; depends=[curl jsonlite plyr rappdirs tibble]; }; - exiftoolr = derive2 { name="exiftoolr"; version="0.2.3"; sha256="085lgv8nfmlg180ym36r1zyfaka61zzsjs9y60yl4y6a14k81wfs"; depends=[backports curl data_table jsonlite zip]; }; + exiftoolr = derive2 { name="exiftoolr"; version="0.2.4"; sha256="0ybxz6dw7kmd1638kp5qllfczdcpz9r06da1jqww4gfz4rw7q821"; depends=[backports curl data_table jsonlite zip]; }; expDB = derive2 { name="expDB"; version="0.1.0"; sha256="0h7f9127vrd45lg7k0bkgq3cghxwv2z11p4pak20pakk13g82hj4"; depends=[DBI dplyr lubridate magrittr png readxl reshape2 rlang RSQLite stringr tibble tidyr tidyverse weaana]; }; expSBM = derive2 { name="expSBM"; version="1.3.5"; sha256="0k8nkwqrcmmhv0x8a2np1rm5cyc9glyvndwdbnp03v0wrg8121sw"; depends=[blockmodels gtools mclust Rcpp RcppArmadillo]; }; expandFunctions = derive2 { name="expandFunctions"; version="0.1.0"; sha256="0661l4ab0xhjidmh8ycvymhp3wgxafm7nd1c59bfpxhyhz76n1p4"; depends=[glmnet orthopolynom plyr polynom]; }; expectreg = derive2 { name="expectreg"; version="0.53"; sha256="0g5py2096dyrcnvgmmba6g796ky150xk63ny6h6ylmajqfcypm1a"; depends=[BayesX colorspace fields Matrix mboost quadprog Rcpp RcppEigen]; }; - experDesign = derive2 { name="experDesign"; version="0.3.0"; sha256="19rxfmvc7mamywm43ixwj0kca1y61k8xk9wdmhhyqq6y0wbvhxdg"; depends=[]; }; + experDesign = derive2 { name="experDesign"; version="0.4.0"; sha256="0qhp9kwcjk3l7zwd1bnkv5880cylzmf2d0n2y27jnsc4wns72hfz"; depends=[]; }; experiences = derive2 { name="experiences"; version="0.1.1"; sha256="1fqcq9jaw79nafm4qqbwm9qg2xlscjcyx3rmk7677xxrz7kywn94"; depends=[cli dplyr huxtable magrittr scales stringr tibble]; }; experiment = derive2 { name="experiment"; version="1.2.1"; sha256="0lzxwpcz7m4wngfw0wyazkhh4icn9zjd8jmgf6ym2zzk3xc4dji1"; depends=[boot MASS]; }; experimentr = derive2 { name="experimentr"; version="0.1.0"; sha256="0ji2031r108rzna00zhsh70kfcnhcscz0an0jv0vvj00hrakl0yr"; depends=[]; }; - expertsurv = derive2 { name="expertsurv"; version="1.3.0"; sha256="0m8p902528z3ih0mzgds0jg8iv885279mmdpv0zhf2wc3hd99ri7"; depends=[abind BH dplyr flexsurv ggplot2 loo magrittr Rcpp RcppEigen RcppParallel Rdpack rlang rms rstan rstantools scales SHELF StanHeaders stringr survival tibble tidyselect]; }; expint = derive2 { name="expint"; version="0.1-8"; sha256="1cn6c84pqf8bgk109qm4znn186h6s6cpll3d11cw144h0vh4yr8j"; depends=[]; }; - expirest = derive2 { name="expirest"; version="0.1.5"; sha256="08gwy1fikj7kg7h6fc7w15621jc0prdqdhzx14ad6dvdi5rd33gv"; depends=[ggplot2 rlang]; }; - explainer = derive2 { name="explainer"; version="1.0.0"; sha256="10ycixmhjyakb3di5p4v5c6vji6jypkf6za30rqh1c7mzzxbvlah"; depends=[cvms data_table dplyr egg ggplot2 ggpmisc ggpubr magrittr plotly tibble tidyr writexl]; }; + expirest = derive2 { name="expirest"; version="0.1.6"; sha256="1pav81y4n23q42kfvbsdinfyklxwhspsxvfdyvs891zsvy2m93yn"; depends=[ggplot2 lifecycle rlang]; }; + explainer = derive2 { name="explainer"; version="1.0.1"; sha256="13gx8yicc0vglljhjhqb42vhsv1zcv1mpyy5yr4cvvg96s9r1wi4"; depends=[cvms data_table dplyr egg ggplot2 ggpmisc ggpubr magrittr plotly tibble tidyr writexl]; }; explor = derive2 { name="explor"; version="0.3.10"; sha256="102rjnllk5xxsik42dd8m1rryz5y2h2dwmidy2jy3zlylgc4dhdr"; depends=[dplyr DT formatR ggplot2 highr RColorBrewer scatterD3 shiny tidyr]; }; exploratory = derive2 { name="exploratory"; version="0.3.31"; sha256="0m8visp57v2bgfbi3n6ywz2z7djd6bnd19hcz0jl2fjw9w5sw3hy"; depends=[data_table DT ggplot2 ggridges lemon lm_beta mediation remotes shiny shinydashboard weights]; }; - explore = derive2 { name="explore"; version="1.2.0"; sha256="0sbrzng90pqda99jh53lbf342aj5dp8dxq9jyv9apj095n2yh5lf"; depends=[cli dplyr DT forcats ggplot2 gridExtra magrittr palmerpenguins rlang rmarkdown rpart rpart_plot shiny stringr tibble]; }; + explore = derive2 { name="explore"; version="1.3.1"; sha256="0ays8gj7ba5rdih2hszgfz0asxsmx2jxna1cxv2ahni8rjr3h632"; depends=[cli dplyr DT forcats ggplot2 gridExtra magrittr palmerpenguins plotly rlang rmarkdown rpart rpart_plot shiny stringr tibble]; }; exploreR = derive2 { name="exploreR"; version="0.1"; sha256="154j5wiiy9vqdvh1qvdkz2fdp2phcygbbjl7nj5nkn07xwxbsc77"; depends=[ggplot2]; }; expm = derive2 { name="expm"; version="0.999-9"; sha256="1m7yiya3hyv6l87qi0vj9s9cmajnig7ah08id9y4yg4dr95278c3"; depends=[Matrix]; }; export = derive2 { name="export"; version="0.3.0"; sha256="1b238d6aa1m2pcg7vdjbrvjj748j3fim5zvhng7lgkag2rzjqa56"; depends=[broom devEMF flextable officer openxlsx rgl rvg stargazer xml2 xtable]; }; @@ -9842,7 +10003,7 @@ in with self; { extraDistr = derive2 { name="extraDistr"; version="1.10.0"; sha256="1ad3xp4axbbid9i9vd4q8iccs3g3917yic2mas37mfwm5in4l9pl"; depends=[Rcpp]; }; extrafont = derive2 { name="extrafont"; version="0.19"; sha256="13dbrlf54nbyfz3z2snz7x4m6rfnnhk2l8kkwpgcagzi5lar13sf"; depends=[extrafontdb Rttf2pt1]; }; extrafontdb = derive2 { name="extrafontdb"; version="1.0"; sha256="115n42hfvv5h4nn4cfkfmkmn968py4lpy8zd0d6w5yylwpzbm8gs"; depends=[]; }; - extrafrail = derive2 { name="extrafrail"; version="1.9"; sha256="1zk77g4ziv7vrqy212bs2nbjw6ncp0fzf4f74jkjbyqa7f4p8nhg"; depends=[expint msm pracma survival]; }; + extrafrail = derive2 { name="extrafrail"; version="1.10"; sha256="1bkm1ja9ksd7b70sxc6jg2ha2ml0l5hwh4j2ph02imjxwcnanach"; depends=[expint msm pracma survival]; }; extraoperators = derive2 { name="extraoperators"; version="0.3.0"; sha256="1kv72s5fcaiyp4sa2r4plm6psjhh07cdkl0zd7mdl25r8ixs1k3h"; depends=[]; }; extras = derive2 { name="extras"; version="0.6.1"; sha256="1m807qay8zj4wbghajvmph87rwsjfhra5090adf8i42bif29phwb"; depends=[chk lifecycle]; }; extraterrestrial = derive2 { name="extraterrestrial"; version="0.1.0"; sha256="0clss1zwgw1497n2xif82kplr1w1ajs4xs02041ads3l8craj7y1"; depends=[]; }; @@ -9853,7 +10014,7 @@ in with self; { extremis = derive2 { name="extremis"; version="1.2.1"; sha256="11y3cb5z6vsrpdffdr44afz3is0ikxvpb81a8pwc7p8q63rxq4a2"; depends=[emplik evd MASS]; }; extremogram = derive2 { name="extremogram"; version="1.0.2"; sha256="13k869v6j4ik9p8w0gf1absvb45xbd3nnwghsz0ix7y0vyvry358"; depends=[boot MASS]; }; exuber = derive2 { name="exuber"; version="1.0.2"; sha256="1r3hb4nlaph1a2s0dmd1n22ax9xgmdrg75w2xlbf8v1j3ifamvl9"; depends=[cli doRNG doSNOW dplyr foreach generics ggplot2 glue lubridate progress purrr Rcpp RcppArmadillo rlang tibble tidyr]; }; - exvatools = derive2 { name="exvatools"; version="0.7.0"; sha256="1bq1m4gajd3wlv7qknyai962dhbf9lir36wym25q1a7mikgc3brh"; depends=[cli data_table openxlsx reshape2]; }; + exvatools = derive2 { name="exvatools"; version="0.8.0"; sha256="090bxz71jc18h2nnmk4ja5irkh9qdihxa5pngq3c0ci7xhk6x52a"; depends=[cli data_table openxlsx reshape2]; }; eye = derive2 { name="eye"; version="1.2.1"; sha256="0la9hlpryqczi6v6pyjx2hdhhdgm3aijs45v1nj76a867zmf77k9"; depends=[cli dplyr english lubridate magrittr pillar purrr rlang stringr tibble tidyr tidyselect]; }; eyeRead = derive2 { name="eyeRead"; version="0.0.4"; sha256="0f6knzr4fdipbrvcsk0q9yjvkjjyc4wc252lq2s41gdvj3hv575d"; depends=[data_table tibble tidyr]; }; eyeTrackR = derive2 { name="eyeTrackR"; version="1.0.1"; sha256="14m7l8v0ry1ami1jl0xjp743m1ycklgfwi06vk5amppdp5w3w3qr"; depends=[data_table plyr stringr]; }; @@ -9871,7 +10032,7 @@ in with self; { ezmmek = derive2 { name="ezmmek"; version="0.2.4"; sha256="0x62nzs1kayv95a6ldav732v79gahrri2khy1w678rxbzfx5wkqy"; depends=[assertable dplyr ggplot2 magrittr nls2 purrr rlang tidyr]; }; ezplot = derive2 { name="ezplot"; version="0.7.13"; sha256="1apfchy9s09hvympq1ipvxsqizwgx05sza8k38yf9vl8nphcdpkc"; depends=[dplyr forcats ggplot2 lubridate rlang]; }; ezr = derive2 { name="ezr"; version="0.1.5"; sha256="0r4zq0864xpnmczg1zpaasi348j1fllrn0rqfa5fmjh245chcpd4"; depends=[data_table DT ggplot2 ggridges moments shiny shinydashboard weights]; }; - f1dataR = derive2 { name="f1dataR"; version="1.5.1"; sha256="11w04cbzgxh4zl8ra4kjaz9ghj2rczqa73g0d5vl43j4i0lrq25w"; depends=[cachem cli dplyr glue httr2 janitor jsonlite lifecycle magrittr memoise rappdirs reticulate rlang tibble tidyr withr]; }; + f1dataR = derive2 { name="f1dataR"; version="1.5.3"; sha256="1w6h6626yjh5wsdlzq28mgmg0jr7z3zdfkcg12rf9znwbkw8wl01"; depends=[cachem cli dplyr glue httr2 janitor jsonlite lifecycle magrittr memoise rappdirs reticulate rlang tibble tidyr withr]; }; fANCOVA = derive2 { name="fANCOVA"; version="0.6-1"; sha256="04mw0blgpwdk6wdg8llrig43psgc0vb42cbimvzbnym8v503dsn3"; depends=[]; }; fAssets = derive2 { name="fAssets"; version="4023.85"; sha256="1yrs3mfq8ym5pdmf6236xwnc8176z7j36f2bzrrwdfp7kz2gq0id"; depends=[ecodist energy fBasics fMultivar MASS mvnormtest robustbase sn timeDate timeSeries]; }; fBasics = derive2 { name="fBasics"; version="4032.96"; sha256="14461d6ac8hcn1x3srh45a4s5imafqb0xy8bn5l6d0qwhw4njmg1"; depends=[gss MASS spatial stabledist timeDate timeSeries]; }; @@ -9879,12 +10040,12 @@ in with self; { fCopulae = derive2 { name="fCopulae"; version="4022.85"; sha256="18gjlh254wm2yjyxrhrlbhjp6qvan3yway2m3fb0dqskd6dwmgq2"; depends=[fBasics fMultivar timeDate timeSeries]; }; fDMA = derive2 { name="fDMA"; version="2.2.7"; sha256="02710ynd3y13pkbypmqh7lid9g3xn282kxf59yr5p3d76384z0gg"; depends=[doParallel foreach forecast gplots iterators itertools png psych Rcpp RcppArmadillo tseries xts zoo]; }; fExtremes = derive2 { name="fExtremes"; version="4032.84"; sha256="0cg2rbyx9704gii2mr6bwc64mjbzxh5n1i6x06yrg3gpixzl3gy0"; depends=[fBasics fGarch timeDate timeSeries]; }; - fGarch = derive2 { name="fGarch"; version="4032.91"; sha256="0jl76w657hlx1mf977dcm2yv1sv1fsy1nfiqnfnccqscyx9iz0z5"; depends=[cvar fastICA fBasics Matrix timeDate timeSeries]; }; - fHMM = derive2 { name="fHMM"; version="1.2.2"; sha256="1133gnxyyb2dpid6b9y89kwxb01gblk4bb1k78pjnr0yh8r2v13x"; depends=[checkmate cli foreach MASS oeli padr progress Rcpp RcppArmadillo]; }; + fGarch = derive2 { name="fGarch"; version="4033.92"; sha256="038lcx1sxkldqvmy9y14gmmbkqn4gqzlnff80s11fny004h6hdf8"; depends=[cvar fastICA fBasics Matrix timeDate timeSeries]; }; + fHMM = derive2 { name="fHMM"; version="1.3.1"; sha256="1ha935ibhz4iicyx3azlk867pkrmj4lrjs1rsyqljf46zd63nfan"; depends=[checkmate cli foreach MASS oeli padr pracma progress Rcpp RcppArmadillo]; }; fICA = derive2 { name="fICA"; version="1.1-2"; sha256="0dqw3qybnpdnvhfh5inkc4011bzhsxvhpv8zzmkm3q5m6hkc6rlg"; depends=[JADE Rcpp RcppArmadillo]; }; fImport = derive2 { name="fImport"; version="4032.87"; sha256="1vcfzivsv88k9827dlm93radm0m33cwlhx8vqnz81ib5b65amqsx"; depends=[timeDate timeSeries]; }; fMRIscrub = derive2 { name="fMRIscrub"; version="0.14.5"; sha256="1k0ixg82sgngmpbpl2b57lhamm19bfgcxszrwpf5qkvrh83ab3gs"; depends=[cellWise e1071 expm fMRItools gamlss MASS pesel robustbase]; }; - fMRItools = derive2 { name="fMRItools"; version="0.4.2"; sha256="0rd77bsi51pgvmp1vyrcyg77yqj9vm5fnb98i9iyngyrx4hzv5m9"; depends=[matrixStats]; }; + fMRItools = derive2 { name="fMRItools"; version="0.4.7"; sha256="0jpqv7g8xrq6m3rximpcxll8p84wnmww9fiy69fjqfxbg857x35w"; depends=[matrixStats]; }; fMultivar = derive2 { name="fMultivar"; version="4031.84"; sha256="1f54cvl7m064cxkjr0rz84xprrbr76cw12mjmi8wld4ac5a16igc"; depends=[cubature fBasics mvtnorm sn]; }; fNonlinear = derive2 { name="fNonlinear"; version="4021.81"; sha256="1dpzg880wnja357qy3r4v5qbqhx7pkknd0rph75xvvn38p4rc0ca"; depends=[fBasics timeDate timeSeries]; }; fPASS = derive2 { name="fPASS"; version="1.0.0"; sha256="0xrvkcgbzd0xkrxc5p18bhfb5hlf5kxrqyjpy4482bjhr3rr714f"; depends=[dplyr expm face gamm4 gss lifecycle magrittr MASS Matrix mgcv nlme purrr rlang stringr testthat]; }; @@ -9893,15 +10054,17 @@ in with self; { fRegression = derive2 { name="fRegression"; version="4021.83"; sha256="12xwq90rch8s8jk3m4ckk6bxjf5phwx8hjwxjdsk2r07afvfc2zi"; depends=[fBasics lmtest MASS mgcv nnet polspline timeDate timeSeries]; }; fSRM = derive2 { name="fSRM"; version="0.6.5"; sha256="0qp2pcq01vfgaczd57j4wmzvn4srzlwh7ya3sdp7vwzyb8dbjajn"; depends=[foreign ggplot2 gridExtra lavaan plyr reshape2 scales tcltk2]; }; fTrading = derive2 { name="fTrading"; version="3042.79"; sha256="0xnfg4npfdrvmp1n6vbsm7if16n5j83b7y1i2m5b34cqnlz9d69y"; depends=[fBasics timeDate timeSeries]; }; - fUnitRoots = derive2 { name="fUnitRoots"; version="4021.80"; sha256="1ycsa5mw43mdrp4xb39j8n0c393qmmnyc7ncbkcjgyms2xk8fhjh"; depends=[fBasics timeSeries urca]; }; + fUnitRoots = derive2 { name="fUnitRoots"; version="4040.81"; sha256="0p8hjzqqkqzfainj5m48k73axwp0q7j7m9zg18smwx7zpcsicgsl"; depends=[fBasics timeSeries urca]; }; fabCI = derive2 { name="fabCI"; version="0.2"; sha256="1vga322xpqzsh40n74v8vqiq8zbzrabvg58mp50bcx2ml0dikgnm"; depends=[MASS]; }; fabMix = derive2 { name="fabMix"; version="5.1"; sha256="12d19qjjrdpihprqjd5x2iirn33rmfkl6i9zcyani7vv6b8cpaxp"; depends=[coda corrplot doParallel foreach ggplot2 label_switching MASS mclust mvtnorm RColorBrewer Rcpp RcppArmadillo]; }; - fabR = derive2 { name="fabR"; version="2.0.1"; sha256="16qmd77g3sf55q9zd01mknic4616yjjl9l6k0nfsp00nkpi8gbb0"; depends=[bookdown digest dplyr fs haven janitor lifecycle lubridate purrr readr readxl rlang stringr tidyr usethis writexl xfun]; }; + fabPrediction = derive2 { name="fabPrediction"; version="1.0.4"; sha256="1vachv2fgjlh932q28266b6x59sdvrmwp8si9pa4b543sdzklpms"; depends=[sae]; }; + fabR = derive2 { name="fabR"; version="2.1.0"; sha256="1rqy3n3gnylpfc48pmrbm91y1lr87hkg44x9x53sky9044ms6flx"; depends=[bookdown dplyr fs haven janitor lifecycle lubridate purrr readr readxl rlang stringr tidyr usethis writexl xfun]; }; fabisearch = derive2 { name="fabisearch"; version="0.0.4.5"; sha256="0yxmw7d7j3llcfs4d0dn2vv4ajalwz0qxrg7bqgql8dvwrb9jgkh"; depends=[doParallel doRNG foreach NMF reshape2 rgl]; }; fable = derive2 { name="fable"; version="0.3.4"; sha256="0bzw9c68dpx048ihff9sy40d7aiqdqrspfrfyj9pd1pj3brn3blv"; depends=[distributional dplyr fabletools Rcpp rlang tibble tidyr tsibble]; }; fable_ata = derive2 { name="fable.ata"; version="0.0.6"; sha256="1i596w593xzqlfq4mxw6cafqs9a551mj58ai4l0q7xav44hm9zlq"; depends=[ATAforecasting distributional dplyr fabletools lubridate rlang tibble tsbox tsibble]; }; fable_prophet = derive2 { name="fable.prophet"; version="0.1.0"; sha256="12y2k05plg6d6lgqk6617q6z5m6xz33zdsjh56k86h230qqw68rp"; depends=[distributional dplyr fabletools lubridate prophet Rcpp rlang tsibble]; }; - fabletools = derive2 { name="fabletools"; version="0.4.1"; sha256="0zw643g0mfypic4f2d1vi29n5pfc39z59jp5z40kzpjqc97vsqj6"; depends=[distributional dplyr generics ggdist ggplot2 lifecycle progressr R6 rlang scales tibble tidyr tidyselect tsibble vctrs]; }; + fableCount = derive2 { name="fableCount"; version="0.1.0"; sha256="1swp679ajj285sm5kgqw5ic1g1nwsf8ljqkhghrikzqn0qqynjr0"; depends=[distributional dplyr fable fabletools glarma lubridate stringr tibble tidyr tscount tsibble tsibbledata]; }; + fabletools = derive2 { name="fabletools"; version="0.4.2"; sha256="12s6x32m9nn6jriy7biqkzp62njbmih6h2hybx5jmcy17pccw5rr"; depends=[distributional dplyr generics ggdist ggplot2 lifecycle progressr R6 rlang scales tibble tidyr tidyselect tsibble vctrs]; }; fabricatr = derive2 { name="fabricatr"; version="1.0.2"; sha256="1hyi0idhf88sg4lx0yyss17qp57v5j1p1bq22wdf2fgg11hnl68x"; depends=[rlang]; }; fabricerin = derive2 { name="fabricerin"; version="0.1.2"; sha256="0ynvnxzxx1iybyy5pvwfsj5y9jjixyrpji9vcl5fq5mjnpg8mpqk"; depends=[glue htmltools]; }; face = derive2 { name="face"; version="0.1-7"; sha256="08ri7mrp3az82x3yyydg7vrla8cdl8bxpcnxfv4cfdhxslks9qb7"; depends=[Matrix matrixcalc mgcv]; }; @@ -9919,6 +10082,7 @@ in with self; { factor256 = derive2 { name="factor256"; version="0.1.0"; sha256="17jmyhi7qm3prgaxa8hn84769czwxhhh3n9sib3cxq9diilri3y6"; depends=[]; }; factorial2x2 = derive2 { name="factorial2x2"; version="0.2.0"; sha256="045887hwknwm92wlrp0jlvxj5aal50vpnc7ddbh7c8smawmrdwfd"; depends=[mvtnorm survival]; }; factormodel = derive2 { name="factormodel"; version="1.0"; sha256="0yvp8mk42hi1vhrw29djabndc8pbbpjbr6bwss95wsmk7zvvf6i2"; depends=[dplyr gtools nnet pracma]; }; + factorplot = derive2 { name="factorplot"; version="1.2.3"; sha256="0gh2rv518hz39sihv9b08v8ldyyac21djz6ynxdaajh0hcicvasf"; depends=[multcomp]; }; factorstochvol = derive2 { name="factorstochvol"; version="1.1.0"; sha256="15ki0kaqam97zlm0mgl8pf2swrcqw46d5816aavwmn6jw2banksm"; depends=[corrplot GIGrvg Rcpp RcppArmadillo stochvol]; }; factory = derive2 { name="factory"; version="0.1.0"; sha256="1715bx2rn8kk5qd196jnrv5f95l54n4y0aqqdzfkgrmqihcy8ahx"; depends=[purrr rlang]; }; factset_analyticsapi_engines = derive2 { name="factset.analyticsapi.engines"; version="3.0.1"; sha256="0v96z837dii1q7mbpd48zwpl2qjzqnhignb80g0xkc4iygsnrrms"; depends=[caTools httr jsonlite R6 rlang]; }; @@ -9941,14 +10105,14 @@ in with self; { fam_recrisk = derive2 { name="fam.recrisk"; version="0.1"; sha256="1lyrq7bq7p7ijc2vf545nazw4akncz08548ya1dv3lsc5jmkgfzj"; depends=[]; }; famSKATRC = derive2 { name="famSKATRC"; version="1.1.0"; sha256="1xbh0by4sjxrmy00v1svcj3lb98p9krpncbhpjbli1jd2p47yk60"; depends=[bdsmatrix CompQuadForm coxme kinship2]; }; familial = derive2 { name="familial"; version="1.0.5"; sha256="079dw3rwh8p0g3x5n8bc6rvkjfxa9r1179vl9dpyv186zmi1palv"; depends=[DepthProc ggplot2 matrixStats]; }; - familiar = derive2 { name="familiar"; version="1.4.6"; sha256="1992sn148cahnv8dzdcibc8ny6jp8iw39555mk66flvr0z4jv9rh"; depends=[data_table rlang rstream survival]; }; + familiar = derive2 { name="familiar"; version="1.4.8"; sha256="1rlnp027r02d7hr2ppal6ljnbkp6xbw86gm2wfp2gsjmckrf7lp7"; depends=[data_table rlang rstream survival]; }; fanc = derive2 { name="fanc"; version="2.3.11"; sha256="0lvzp18r5facwbbvjf00zgrlzhr4dp8f6f87fmy04dgqwj7pzwhh"; depends=[ellipse Matrix]; }; fancycut = derive2 { name="fancycut"; version="0.1.2"; sha256="1xg5qjxf77g10h07x6rvb8c3klc9gbr77bkw352qpas268pkswl2"; depends=[]; }; fangs = derive2 { name="fangs"; version="0.2.13"; sha256="11jcj9mk20lmqdwl5cczki5kzx4fdrci8xjg6g401ca1m00hhb1v"; depends=[]; }; fanovaGraph = derive2 { name="fanovaGraph"; version="1.5"; sha256="1hffda52yk24slbgsfdgkpg3vsryfnhlw09r39cbyz483i7xd8d0"; depends=[DiceKriging igraph sensitivity]; }; fanplot = derive2 { name="fanplot"; version="4.0.0"; sha256="08zd2af26ah1rdkzxi1sv4c4l06jpxd6m38q3xy657k2jm90rkkc"; depends=[]; }; fansi = derive2 { name="fansi"; version="1.0.6"; sha256="0qqq8gz6sfr5yib4qmvk458qa0ypaz0n7f2ygjnpy2p5vy8cd7ga"; depends=[]; }; - fanyi = derive2 { name="fanyi"; version="0.0.6"; sha256="047ag47lnw5p54zp5zwpdmnmngvssv8n55h2h6ypvfdcflybfnid"; depends=[digest ggfun httr2 jsonlite openssl rentrez rlang SSEparser uuid yulab_utils]; }; + fanyi = derive2 { name="fanyi"; version="0.0.7"; sha256="1wl5sgnk154ivmnwdmp7bqm3q30rplc1c2gqfj3w3g3wlnzalvaa"; depends=[digest ggfun httr2 jsonlite openssl purrr rentrez rlang SSEparser uuid yulab_utils]; }; faoutlier = derive2 { name="faoutlier"; version="0.7.6"; sha256="0dd8k5s0yv047p10jisqz13nflby4y0dg97r0nbjygzcq1ryx2bs"; depends=[lattice lavaan MASS mirt mvtnorm pbapply sem]; }; faq = derive2 { name="faq"; version="0.1.1"; sha256="0knajqm9ydsjhn6xymfrcyf2b1kgfbiai8ai2zlm7p4mgfry504h"; depends=[htmlwidgets jsonlite]; }; far = derive2 { name="far"; version="0.6-6"; sha256="0p0731vg1y57z8dmbrsa5gbnpf754q8yi5mm5h9480x1f8nk38bi"; depends=[nlme]; }; @@ -9956,10 +10120,11 @@ in with self; { farff = derive2 { name="farff"; version="1.1.1"; sha256="1hniqhc4mdnaq8bmpj2fmb6iwgys0al1kvcdiq08pmgj6hhzzjr3"; depends=[BBmisc checkmate readr stringi]; }; farr = derive2 { name="farr"; version="0.3.0"; sha256="0y7vmxva1wjsplh7wfpz9jm26hz5qinbrp7na2gbmdwj78z4d38q"; depends=[DBI dbplyr dplyr lubridate magrittr readr rlang rpart stringr tibble tidyr]; }; farrell = derive2 { name="farrell"; version="0.2.1"; sha256="0i546w5p40j9wqiq7qvbxw0426msavbdpnh258jcg6bagc6bywh8"; depends=[Benchmarking data_table dplyr DT magrittr miniUI readr rlang shiny shinycssloaders shinyWidgets tibble]; }; - farver = derive2 { name="farver"; version="2.1.1"; sha256="1klnr73fhm7n46q85in1v9gi99y6rcdzzg4h4wvnbx23lxndmkqd"; depends=[]; }; + farver = derive2 { name="farver"; version="2.1.2"; sha256="09gy2wmm3jp2k3q6zbmjl6z55a974221q7vi6xhmdd5abnwj722j"; depends=[]; }; fasano_franceschini_test = derive2 { name="fasano.franceschini.test"; version="2.2.2"; sha256="18vpvynpzjmqhz8a2db2f3v5qvkd6a2q7xan1rryay20wgn7aj00"; depends=[Rcpp RcppParallel]; }; + fase = derive2 { name="fase"; version="1.0.1"; sha256="11ygdxp4485dcrv9v28idhxv0s4gyc8hjajqbnxixljg5cdiv0vm"; depends=[RSpectra rTensor splines2]; }; fasjem = derive2 { name="fasjem"; version="1.1.2"; sha256="1bbrcyyg96hakgla3604byrkn9034197vy2is048kdq20yr2y11n"; depends=[igraph]; }; - fasstr = derive2 { name="fasstr"; version="0.5.1"; sha256="1kzk759xvba66fq4zw0p0kwfgbk42bw5z2fi7f8ziy4vzkpwcy93"; depends=[dplyr e1071 fitdistrplus ggplot2 lubridate openxlsx PearsonDS plyr purrr RcppRoll scales tidyhydat tidyr zyp]; }; + fasstr = derive2 { name="fasstr"; version="0.5.2"; sha256="1r2xgxzzjc78d5grlpapc52b11qw0d01c1fahcvfccxjby51dywx"; depends=[dplyr e1071 fitdistrplus ggplot2 lubridate openxlsx PearsonDS plyr purrr RcppRoll scales tidyhydat tidyr zyp]; }; fastAFT = derive2 { name="fastAFT"; version="1.4"; sha256="0vyjp2dyy72d7dfjjky6aygvl6kqm30mk11n5rcj51rydbxaawnc"; depends=[]; }; fastDummies = derive2 { name="fastDummies"; version="1.7.3"; sha256="0sm02pxbabckxpi3mn36h5bz2wx5pyx7a1dhc2abc4c7fwpihsng"; depends=[data_table stringr tibble]; }; fastFMM = derive2 { name="fastFMM"; version="0.2.0"; sha256="1crgl5961c0k1bq4d3xsl38hrwi3cayf1lj7pprbvdd1y3nyvz8b"; depends=[cAIC4 dplyr ggplot2 gridExtra lme4 lmeresampler lsei magrittr MASS Matrix mgcv mvtnorm progress refund Rfast stringr]; }; @@ -9979,27 +10144,31 @@ in with self; { fastRG = derive2 { name="fastRG"; version="0.3.2"; sha256="1ig6z8azl2vsl79nfs3s4f9v1f6f27vzc0kxb9zmvkpx3hfnlm7k"; depends=[dplyr ellipsis ggplot2 glue igraph Matrix RSpectra tibble tidygraph tidyr]; }; fastRhockey = derive2 { name="fastRhockey"; version="0.4.0"; sha256="1xw4ylrsf9wylym79svazrmw2c9fmqk8n0sz1vypsm29dsic879k"; depends=[cli data_table dplyr glue httr janitor jsonlite lubridate magrittr progressr purrr Rcpp RcppParallel rlang rvest stringr tibble tidyr]; }; fastSOM = derive2 { name="fastSOM"; version="1.0.1"; sha256="1fzy7lfx1fn9993h0qh6vbwq0w4gfgbdrprmzb1z3aqq6nqvmngm"; depends=[]; }; - fastTS = derive2 { name="fastTS"; version="1.0.0"; sha256="09ns49dayxr4i78f6dffmwvm9y288x3bs0cfp0lr1qbzpy24vf4s"; depends=[dplyr ncvreg RcppRoll rlang yardstick]; }; + fastTS = derive2 { name="fastTS"; version="1.0.1"; sha256="16icpdhrqx34q189iqkdpbxd95lhvsb39z4xz2b3lq80pbcri0i0"; depends=[dplyr ncvreg RcppRoll rlang yardstick]; }; fastText = derive2 { name="fastText"; version="1.0.4"; sha256="1mrdiqj8pplyygsga1plx8b731i915lzjxhzslkbz6qk2jrj7632"; depends=[data_table ggplot2 glue Rcpp]; }; fastTextR = derive2 { name="fastTextR"; version="2.1.0"; sha256="1hj3cplh0v062q6jm0j3r4spi5aac5bfas7sda9is9glpv6h3sgw"; depends=[Rcpp slam]; }; fastTopics = derive2 { name="fastTopics"; version="0.6-163"; sha256="1nir53ich0xkpclrw34ry4mwih9s4vr7qv8xy6511ny43awznikm"; depends=[ashr cowplot dplyr ggplot2 ggrepel gtools htmlwidgets irlba Matrix pbapply plotly progress quadprog Rcpp RcppArmadillo RcppParallel Rtsne uwot]; }; fastWavelets = derive2 { name="fastWavelets"; version="1.0.1"; sha256="1kz49iw3d37kby6hdk7zvsahms735w46pky186jz0qq9vh4agxn9"; depends=[Rcpp]; }; fasta = derive2 { name="fasta"; version="0.1.0"; sha256="0wnppxn3039dj58xm0b66fsyq537bk8k8m56im11xj1iwc3zc6vw"; depends=[]; }; fastadi = derive2 { name="fastadi"; version="0.1.1"; sha256="1hvi430ws1yzw10fp4z177wc1bnj11pxmvjsbmx0p54bcbb3a32a"; depends=[ellipsis glue logger LRMF3 Matrix Rcpp RcppArmadillo RSpectra]; }; - fastai = derive2 { name="fastai"; version="2.2.1"; sha256="1glq64hhwrwp29scf851nb6nl83hpvvy8cj37z2r36r89i5inp4b"; depends=[generics ggplot2 ggpubr glue png reticulate]; }; - fastbeta = derive2 { name="fastbeta"; version="0.2.0"; sha256="1lcs8zr25bk1gh9b7grpf1y4pkp455glh0c9vaa0gl6ygy2xd558"; depends=[adaptivetau deSolve]; }; + fastai = derive2 { name="fastai"; version="2.2.2"; sha256="1x8s26rwp5bnzsl41wvq39dcc719xqpd0gqz0f74j4mfki824z8g"; depends=[generics ggplot2 ggpubr glue png reticulate]; }; + fastbackward = derive2 { name="fastbackward"; version="1.0.1"; sha256="16idsbb5phdhnwh9gmgb56jadzcnbcyj0qclijlacq3wkwag5xiv"; depends=[MASS]; }; + fastbeta = derive2 { name="fastbeta"; version="0.3.0"; sha256="0s843plibqbx2lfi4npp3pxq30rkiz768yjgc9fgpawq1nlp3ii0"; depends=[]; }; fastcluster = derive2 { name="fastcluster"; version="1.2.6"; sha256="06cd3w62ijf0yx2yq0xgx6qw5lcrnn1033ygx6bl9dmhix2haal5"; depends=[]; }; fastcmh = derive2 { name="fastcmh"; version="0.2.7"; sha256="0hib3r3pkfdi67bdy4pf1pw6869vq4b3pg1pq1zwpyy76nbnq9vl"; depends=[bindata Rcpp]; }; + fastcmprsk = derive2 { name="fastcmprsk"; version="1.24.5"; sha256="1ymg79y913h4s55h1pbmbx0hx40khc0mq6348awzqjy8pjhz1mdl"; depends=[dynpred foreach Matrix survival]; }; fastcox = derive2 { name="fastcox"; version="1.1.3"; sha256="0jn19v6mkwgyz8x63xrfgkgnf0f2rq338r5qkhz690mdzr4c47a3"; depends=[Matrix]; }; - fastcpd = derive2 { name="fastcpd"; version="0.12.2"; sha256="1wfgrrb1vz1ljwm4vj3f462kq7f1sriy750jdsshavbfq4jjzjm1"; depends=[fastglm forecast glmnet Matrix progress Rcpp RcppArmadillo testthat tseries]; }; + fastcpd = derive2 { name="fastcpd"; version="0.14.3"; sha256="0b5xlx80nlbmkp8h4rnz0367zxn2hlwpcb4zid5jq3q32rv8r6sz"; depends=[fastglm forecast glmnet Matrix progress Rcpp RcppArmadillo RcppClock testthat tseries]; }; + fastdigest = derive2 { name="fastdigest"; version="0.6-4"; sha256="1809y57cvck6gssrwnycgqjnka6jxx17dbf927cvwih4v58abdmj"; depends=[]; }; fasterElasticNet = derive2 { name="fasterElasticNet"; version="1.1.2"; sha256="1hr0wc6s6zpq1hkfgshf0dqjxb7s2849bb8lb04nmi6p42r3628g"; depends=[Rcpp RcppArmadillo]; }; fasterize = derive2 { name="fasterize"; version="1.0.5"; sha256="1d63q77hfbn2ly8cwsik4gaavdhidpi7idf7qj2y5bi9xhd10kyl"; depends=[raster Rcpp RcppArmadillo wk]; }; fastglm = derive2 { name="fastglm"; version="0.0.3"; sha256="0283kgk81cxbii7ljmp1rzqg5mzkvf7cj7lflhhhkgj5ljqina2i"; depends=[BH bigmemory Rcpp RcppEigen]; }; fastglmpca = derive2 { name="fastglmpca"; version="0.1-103"; sha256="1yzk91g9aszazfm4gp70wfs21dbdi9dxlh95ylh839pivs78cvrc"; depends=[daarem distr Matrix MatrixExtra Rcpp RcppArmadillo RcppParallel]; }; fastkmedoids = derive2 { name="fastkmedoids"; version="1.2"; sha256="1z98ndxhq2ag870g0xqkw04b4k722994vh0pq46bw8bqc9v7bpkk"; depends=[Rcpp]; }; + fastkqr = derive2 { name="fastkqr"; version="1.0.0"; sha256="18zawflm5fam28y8f5ygf26nmi5if3h765grb5skkzibxnmpxdff"; depends=[dotCall64 MASS Matrix rlang]; }; fastliu = derive2 { name="fastliu"; version="1.0"; sha256="1ykcqm1l8674hmp7j62skla9735gs15mqcd3q628vjvrwgcq0mxl"; depends=[Rcpp RcppArmadillo]; }; fastlogitME = derive2 { name="fastlogitME"; version="0.1.0"; sha256="1wpbcjb3ncxl904492alikslnqg53zgx6psxx7qllspd43s8ymv7"; depends=[]; }; - fastmap = derive2 { name="fastmap"; version="1.1.1"; sha256="0wvibiy16i30nzg5k80md68lpz7g6iwbl02j4fyqmbhns2fq08rn"; depends=[]; }; + fastmap = derive2 { name="fastmap"; version="1.2.0"; sha256="0ilj7gcbnha6l61sqzk6wrj6l08mxyay49957izha7axj6i09nmi"; depends=[]; }; fastmatch = derive2 { name="fastmatch"; version="1.1-4"; sha256="0symkcmyrqvz6hkawr40ga808rb3w4hy9ssfsi5ri8hykjn4r4cs"; depends=[]; }; fastmatrix = derive2 { name="fastmatrix"; version="0.5-772"; sha256="0mcwzwr2cam48fmb5di04jxwscq2ixw0ikwwvb2ngx2rkap1nq3j"; depends=[]; }; fastmit = derive2 { name="fastmit"; version="0.1.1"; sha256="13hczsfbzssd272kpbq8l2l64lqrkmi2j6f3xyp9jvvxdd506kq0"; depends=[Rcpp RcppArmadillo]; }; @@ -10011,7 +10180,7 @@ in with self; { fastrmodels = derive2 { name="fastrmodels"; version="1.0.2"; sha256="1333546nk429l6s4icbmx8hmh29wsc252wbmmhsmgb116l4ra9zi"; depends=[xgboost]; }; fastshap = derive2 { name="fastshap"; version="0.1.1"; sha256="1j6bnkv4q8n85xlvzm5p6p4yg8wdp6an6skbvdif5g9c376hzqb2"; depends=[foreach Rcpp RcppArmadillo]; }; fasttime = derive2 { name="fasttime"; version="1.1-0"; sha256="00290sxfa6nihahm3s9bslpsmyfm0cpziajmr9mg7grxrzx53ia6"; depends=[]; }; - fastverse = derive2 { name="fastverse"; version="0.3.2"; sha256="10k749zff9nhrwgyvc1fvpp34mncc7958z35y2v5sb08my2x26r0"; depends=[collapse data_table kit magrittr]; }; + fastverse = derive2 { name="fastverse"; version="0.3.3"; sha256="03jcgwsaxwx564dn7qmynah0l48hjs8nfx0wmv9a9x9sqw7aqknb"; depends=[collapse data_table kit magrittr]; }; fat2Lpoly = derive2 { name="fat2Lpoly"; version="1.2.5"; sha256="08bbd17aqmfcacvk283bpf9cp1isf5pgfdciwxn0f7ahdzd81g4s"; depends=[kinship2 multgee]; }; faux = derive2 { name="faux"; version="1.2.1"; sha256="143yc71cfsxnczi719ygrsynxry60nh8263gg8vwp3qrc80j80lh"; depends=[dplyr ggplot2 jsonlite lme4 rlang truncnorm]; }; fauxnaif = derive2 { name="fauxnaif"; version="0.7.1"; sha256="1d2sfcknlaa4m3sq3cg65iq17x3ax0zgkgxkcyin3d8r3sw9k3p6"; depends=[cli rlang]; }; @@ -10045,7 +10214,7 @@ in with self; { fdaACF = derive2 { name="fdaACF"; version="1.0.0"; sha256="0qrsj25p6h2xg25v0ayk8x31d4whyy0mpf2xdpw3hcwhb71mbfhn"; depends=[CompQuadForm fda pracma vars]; }; fdaMixed = derive2 { name="fdaMixed"; version="0.6.1"; sha256="1fv5jdz7ri9cf5wj0p0gdc60r75biifijqr1g3lz095cxsn7f9j0"; depends=[Formula Rcpp RcppArmadillo]; }; fdaMocca = derive2 { name="fdaMocca"; version="0.1-1"; sha256="0y54d8a38d5hjnh8iw2r4zl2d2xz72hjddhxbar91jk6zf3kzpsy"; depends=[doParallel fda foreach Matrix mvtnorm]; }; - fdaPDE = derive2 { name="fdaPDE"; version="1.1-17"; sha256="1h3v36mmlycs34z4a19sfjkr5xm8lq44qgv6jb908fy66m1fcsfa"; depends=[Matrix plot3D Rcpp RcppEigen rgl]; }; + fdaPDE = derive2 { name="fdaPDE"; version="1.1-18"; sha256="0l5kv7vwwjbnfq13l74ij860fpp45hgvwqpxfnpqbxdkq2lfymcn"; depends=[Matrix plot3D Rcpp RcppEigen rgl]; }; fdaPOIFD = derive2 { name="fdaPOIFD"; version="1.0.3"; sha256="0c773hidrg69gs9lzdcwf4hzzmid3kwf73pw6c807y1b4lgiai20"; depends=[FastGP fdapace ggplot2 magrittr MASS patchwork reshape2 tibble]; }; fdaSP = derive2 { name="fdaSP"; version="1.1.1"; sha256="1vhnrw2shxnpd2vnqkjq8lqx344p3z488x8wzpkb8hxnxzmfp08w"; depends=[doParallel foreach ks pracma Rcpp RcppArmadillo Rdpack]; }; fdacluster = derive2 { name="fdacluster"; version="0.3.0"; sha256="0mpnhd6qp4hif1sbxv52dyg3yfff8icn8xz7sximcjn00g81p343"; depends=[cli cluster dbscan dplyr fdasrvf forcats furrr ggplot2 lpSolve nloptr progressr purrr Rcpp RcppArmadillo rlang tibble tidyr withr]; }; @@ -10078,12 +10247,12 @@ in with self; { fechner = derive2 { name="fechner"; version="1.0-3"; sha256="0bassigcipwlr2g8cdjh8jyhmb903k3hla9gnigcbz7qwzlfwa86"; depends=[]; }; fect = derive2 { name="fect"; version="1.0.0"; sha256="1m2ap1ispc2z1qdj341vx1knsjkqfzi6ys4z3hd9bp4g7bi0xsyx"; depends=[abind doParallel doRNG fixest foreach future GGally ggplot2 gridExtra MASS mvtnorm panelView Rcpp RcppArmadillo]; }; federalregister = derive2 { name="federalregister"; version="0.2.0"; sha256="0qr8nd3ylnwcv1wxspw5i7ray5sh30zr648spg0lpqq8dp2b8p7b"; depends=[curl httr jsonlite]; }; - fedmatch = derive2 { name="fedmatch"; version="2.0.5"; sha256="1k6gj0aaihxqwvvvic8s5bhjqlxg6m37yj3bk9hbxy1lijv89w8j"; depends=[BH data_table forcats magrittr purrr Rcpp scales SnowballC stringdist stringr]; }; + fedmatch = derive2 { name="fedmatch"; version="2.0.6"; sha256="06clj31qk6ama56jmd9vpq5h1v7250aixgvaywh5j8fsrp1l7qg2"; depends=[BH data_table forcats magrittr purrr Rcpp scales SnowballC stringdist stringr]; }; fedregs = derive2 { name="fedregs"; version="1.0.0"; sha256="171j6r6qxnx9gk9x9gpdyh51ssrgmf7sczc4889qr3qqw15sm4bn"; depends=[dplyr httr magrittr purrr rvest stringi tidyr tidytext xml2]; }; fedstatAPIr = derive2 { name="fedstatAPIr"; version="1.0.3"; sha256="0pbbm2rfqij1yk4ywdd3pmdkb2arkwnmpyn70d52qrsjaxlhrnqi"; depends=[data_table httr jsonlite magrittr readsdmx xml2]; }; fedz1 = derive2 { name="fedz1"; version="0.1.0"; sha256="1havzbpqwlc32qmr2mpdxczjj918aig7l0iz669pkgxgqxf8dq5x"; depends=[]; }; feisr = derive2 { name="feisr"; version="1.3.0"; sha256="1i89w3n365k4fwgiifb2f68ag11f96rrxqxradrjvbmi7r80md99"; depends=[dplyr Formula plm Rdpack]; }; - felp = derive2 { name="felp"; version="0.3.0"; sha256="134kv7mj3ajgcl7z8dq0vjx3yqy2awlpn3xs39q7yl7z5kz6i44g"; depends=[curl data_table dplyr htmltools magrittr matrixStats miniUI prettycode reactable rlang rstudioapi shiny stringi]; }; + felp = derive2 { name="felp"; version="0.5.0"; sha256="12crd3rqkh1wj18x2nhq19v3jh4595qp1ll977ki0i6xmg5vhgfb"; depends=[callr curl data_table dplyr htmltools magrittr matrixStats miniUI prettycode reactable rlang rstudioapi shiny stringi]; }; feltr = derive2 { name="feltr"; version="0.0.4"; sha256="1cn6kwkvcy91ng5d67x2hs853k5dqhlap6yym1xfw741f11dx1zy"; depends=[cli curl fs geojsonsf httr2 jsonlite purrr rlang sf stringr tibble tidyr]; }; fence = derive2 { name="fence"; version="1.0"; sha256="18l3fliww60d9n9hbfdny5vr9mi78krwpjj5sypdsb77d6332h9q"; depends=[fields ggplot2 lme4 MASS sae snow snowfall]; }; fergm = derive2 { name="fergm"; version="1.1.4"; sha256="1d979z2m5f13i1w9d8kh9rnaafavsap169w0nycpd5j2f3dfhyn7"; depends=[ergm extrafont ggplot2 matrixStats network reshape2 rstan]; }; @@ -10094,11 +10263,9 @@ in with self; { fetchGoogleAnalyticsR = derive2 { name="fetchGoogleAnalyticsR"; version="0.1.0"; sha256="12s18jicx9rd5dhc8l7hm09lr71nhz6k72j3w4c1j5ds9h522krg"; depends=[jsonlite]; }; fetchSalesforceR = derive2 { name="fetchSalesforceR"; version="0.1.0"; sha256="1826i031wndasgcxxa0bh88vp1r49flzphyfk79pixvlrfjn6gi8"; depends=[jsonlite]; }; ff = derive2 { name="ff"; version="4.0.12"; sha256="1gs1zf3x0clnim7qlrkhlsjf2xgry5ybqnh8ipa2kzhhk9d3bbq8"; depends=[bit]; }; - fflr = derive2 { name="fflr"; version="2.2.3"; sha256="1ib0lgkxxjrsvhl4h4dpyk9qzlsxz95ki0q5qy4flqdm28vl633z"; depends=[httr jsonlite tibble]; }; ffmanova = derive2 { name="ffmanova"; version="1.1.2"; sha256="08paiz94vhyiqaihpg3y9z3cbk9k5mlwwv8f1fs9mis3rv8wabvc"; depends=[]; }; ffp = derive2 { name="ffp"; version="0.2.2"; sha256="05mzhg2hj51x8588nvwqamvrgd24haxw4mq7qn62zaznvxnwsr3m"; depends=[assertthat crayon dplyr forcats ggdist ggplot2 lubridate magrittr mvtnorm NlcOptim nloptr purrr rlang scales stringr tibble tidyr vctrs]; }; ffscrapr = derive2 { name="ffscrapr"; version="1.4.8"; sha256="0dxr7w64wjw1i1bspdj641m1dmgz85bgdapf2k2wba077zkmhhv4"; depends=[cachem checkmate cli dplyr glue httr jsonlite lifecycle magrittr memoise nflreadr purrr rappdirs ratelimitr rlang stringr tibble tidyr]; }; - ffstream = derive2 { name="ffstream"; version="0.1.7.2"; sha256="0xc549sp443isn3rk96m28wsrsg66qzsvz51nx9bykjzi3zy5wjk"; depends=[Rcpp]; }; fftw = derive2 { name="fftw"; version="1.0-8"; sha256="0846s0ix2qj4dg8r9gpydsymbh2qyqnadgsaaph7dvd0cqb02zlc"; depends=[]; }; fftwtools = derive2 { name="fftwtools"; version="0.9-11"; sha256="0zrchp4l0jdbir2gibjf00x225y9giqk80zvqmr2yyvc12lwkw7i"; depends=[]; }; fgdr = derive2 { name="fgdr"; version="1.1.1"; sha256="12rccdh1dmh8azwid8wgkdz8d7lqrdzr5n294j2fawqf4naff2gm"; depends=[data_table jpmesh magrittr purrr raster readr rlang sf stars stringr terra tibble units xml2]; }; @@ -10115,7 +10282,7 @@ in with self; { fiberLD = derive2 { name="fiberLD"; version="0.1-8"; sha256="03f6gx8scpvb06im6m1vd5nakr16925504w4n44fwrbkbmmx48kx"; depends=[BH doParallel foreach Matrix Rcpp RcppArmadillo VGAM]; }; fic = derive2 { name="fic"; version="1.0.0"; sha256="18xz94w1ab17jfi61bdg9z3pm63g488v17ns2ivizkza4gg07pv8"; depends=[abind ggplot2 mvtnorm numDeriv scales survival tensor]; }; fidelius = derive2 { name="fidelius"; version="0.0.2"; sha256="18dsw069j3jzl0splgjjdsybny1hq0dmiyygri8nlfwshijkw15h"; depends=[askpass fs htmltools readr rlang rmarkdown rstudioapi sodium whisker]; }; - fido = derive2 { name="fido"; version="1.0.4"; sha256="0drzxg6aj9rpszlg8cg1rjwk7nnz9np56zkddbd2pxkznsq8j8ni"; depends=[BH dplyr ggplot2 purrr Rcpp RcppEigen RcppNumerical RcppZiggurat rlang tidybayes tidyr]; }; + fido = derive2 { name="fido"; version="1.1.1"; sha256="1q46m55y8ni51b96ckc70ap11w6vjq13wivsm8q37aj464845yy4"; depends=[BH dplyr ggplot2 purrr Rcpp RcppEigen RcppNumerical RcppZiggurat rlang tidybayes tidyr]; }; fields = derive2 { name="fields"; version="15.2"; sha256="0gdddigzbzlhrbp6h2ma5b05m68pmggrkcd80hzgjbjj64ihy9qz"; depends=[maps spam viridisLite]; }; fiery = derive2 { name="fiery"; version="1.2.1"; sha256="127ighz937rgqbg0kiq7wrms7z3r5pf77ixcfa7if35mcv7yrg8s"; depends=[cli crayon future glue httpuv later parallelly R6 reqres rlang stringi uuid]; }; fig = derive2 { name="fig"; version="1.0.0"; sha256="1mzvng4r4xmkmbl55pspjk9bcvkri96vkmjaqkjn8nqxv39sy1pr"; depends=[R6]; }; @@ -10131,21 +10298,22 @@ in with self; { filehashSQLite = derive2 { name="filehashSQLite"; version="0.2-6"; sha256="1758wpzq2h7biwpdlrqhi84k35fbpfpxnji6j79zisr825fqjkpq"; depends=[DBI filehash RSQLite]; }; filelock = derive2 { name="filelock"; version="1.0.3"; sha256="0dqi0w92zq1f9542ma2nk5gkqzfmd4jlf34vysb4vv7mag20xk9d"; depends=[]; }; filematrix = derive2 { name="filematrix"; version="1.3"; sha256="1v3aj1ng742msb0sfdnjsbqb508mqjf8jlq2v33vxldhradw5w0b"; depends=[]; }; - filenamer = derive2 { name="filenamer"; version="0.2.3"; sha256="19gavhh5q7dziv0yc000w06qp58wk2cm52cxjl33p1q4cjk6gg3m"; depends=[]; }; + filenamer = derive2 { name="filenamer"; version="0.2.4"; sha256="0z4x5v5xjxic3bvarsx8p8k64xlhbibd9rhv2b7ihv36dz6qh490"; depends=[]; }; files = derive2 { name="files"; version="0.0.1"; sha256="1vhhawqjjbb6fadkn3l10mvz63w3vmcwvl93fk0q9mhkifzlj9kc"; depends=[]; }; filesstrings = derive2 { name="filesstrings"; version="3.4.0"; sha256="0p5vgrzbvipja9lgarygqphnr1z8vy9kl9n83jnfyvf0gp4ansl2"; depends=[checkmate magrittr purrr rlang strex stringi stringr withr]; }; - filibustr = derive2 { name="filibustr"; version="0.2.0"; sha256="1arq7i2dhzb9260kk830jpxaavz3j0a1sz7yql0s6ik4ww40a9d7"; depends=[dplyr haven lifecycle readr rlang rvest stringr tidyr tidyselect]; }; + filibustr = derive2 { name="filibustr"; version="0.2.1"; sha256="1q7307fwwrvpgf0ypkhs4ayg4m27vpf3kazsvnf73jk3gi33i0ki"; depends=[crul dplyr haven httr2 lifecycle R_utils readr rlang rvest stringr tidyr tidyselect]; }; filling = derive2 { name="filling"; version="0.2.3"; sha256="17vk0pndsc8xhgp4zy5dfyc36pzk2hm5zk6xijdy4xaf7k5j4wls"; depends=[CVXR nabor Rcpp RcppArmadillo Rdpack ROptSpace RSpectra]; }; fillpattern = derive2 { name="fillpattern"; version="1.0.1"; sha256="0xysrb3yzvlag9zpsq7hhqqyrhwapnzc66d636wvxpsi4r50lp0w"; depends=[ggplot2]; }; fillr = derive2 { name="fillr"; version="1.0.0"; sha256="1gx1ihp8j90ywmm6mmmfq4jd6apxawk9s5dfw3jq0wm1c290zqpv"; depends=[]; }; - filteRjsats = derive2 { name="filteRjsats"; version="1.0"; sha256="19zi44av3f5zahinqvgz5bvgh82qrpg4r4fffwjh8a09s975q5mg"; depends=[broman dplyr lubridate rerddap stringr tidyr]; }; filterNHP = derive2 { name="filterNHP"; version="0.1.2"; sha256="0kk6548nr5786ywa83v8by4c1n7ljh9sy4fshpfqizp49fv9zv22"; depends=[data_tree rclipboard shiny shinyBS shinyjs shinyWidgets]; }; + filters = derive2 { name="filters"; version="0.3.1"; sha256="1rxq1ci3q1n4v5nnkrcl29kand7a752b7rrgrzq754jjaybp6xnh"; depends=[magrittr plyr yaml]; }; finalfit = derive2 { name="finalfit"; version="1.0.7"; sha256="04nskvkqd999wjxy7lkanrd4iyfn8xljagyafw1ai7mfiqxgmfag"; depends=[bdsmatrix boot broom dplyr forcats GGally ggplot2 gridExtra lme4 magrittr mice pillar pROC purrr scales stringr survival tidyr tidyselect]; }; - finalsize = derive2 { name="finalsize"; version="0.2.0"; sha256="18nyyl8c121kfr22vanvgbma627w98v39d4n34kr8hd8iw8jx5lx"; depends=[checkmate Rcpp RcppEigen]; }; - finbif = derive2 { name="finbif"; version="0.9.5"; sha256="1b0769nynqhsyvk8h5ihdvxjwcdvq983skllk9n0d4lyx34gn8gp"; depends=[digest httr lutz]; }; + finalsize = derive2 { name="finalsize"; version="0.2.1"; sha256="0sv174v36clz4blvk4d33rkg7w6ylf4a5j4q057z81kkdd0jr042"; depends=[checkmate Rcpp RcppEigen]; }; + finbif = derive2 { name="finbif"; version="0.9.6"; sha256="08vbs7s0d873033sw5nc3x6hmi21yvz0lvg4zcbv2ii40napwjsx"; depends=[digest httr lutz]; }; finbipartite = derive2 { name="finbipartite"; version="0.1.0"; sha256="0sws39nya8y7v78v4nlaz5g2nj4sgq5n5iwhfkyyq6h87slw2h8c"; depends=[CVXR MASS mvtnorm progress quadprog spectralGraphTopology]; }; finch = derive2 { name="finch"; version="0.4.0"; sha256="0q7riaxms460c6z2gb8i0q4pb348bnvry46bjd7pb9mh8fnl1i8b"; depends=[data_table digest EML hoardr xml2]; }; - findInFiles = derive2 { name="findInFiles"; version="0.4.0"; sha256="1saxi8l4006wwxrw18g7wx0pj7l427a2rnb723k0irlhvq0icgwq"; depends=[crayon htmlwidgets shiny stringi stringr tibble vctrs]; }; + findGSEP = derive2 { name="findGSEP"; version="1.2.0"; sha256="0j1m54y46ls3s4097028lf7nj4i8xbfpbxhprqy88j886xwfq56x"; depends=[dplyr ggplot2 pracma RColorBrewer scales]; }; + findInFiles = derive2 { name="findInFiles"; version="0.5.0"; sha256="1fig0r3gpnd7ccxl39sfsgfs3wcm0g02rhmr7ay0zmxkln05hf1k"; depends=[crayon htmlwidgets shiny stringi stringr tibble vctrs]; }; findInGit = derive2 { name="findInGit"; version="0.1.1"; sha256="1j5mvp34nsczmvp5jx7c9gp20q7aqaxrqm2zvj8aq31rc8mfaxk9"; depends=[crayon htmlwidgets stringr]; }; findPackage = derive2 { name="findPackage"; version="0.2.0"; sha256="0g6i512ls79hg0ck0frhadpxvvayzbdcj48rbpawhc5bphjsbcfx"; depends=[]; }; findR = derive2 { name="findR"; version="0.2.1"; sha256="1a7cf6kd7i2l4ffr2b17nb9xnpsjhf6fcwpjy06r0qgcapnfp54b"; depends=[pdftools stringr]; }; @@ -10158,7 +10326,7 @@ in with self; { fingraph = derive2 { name="fingraph"; version="0.1.0"; sha256="130kfhxxxf6cg7ww71nfrwhwrkp52v7zc0qarpjv84826k00cpcq"; depends=[MASS mvtnorm progress spectralGraphTopology]; }; finiteruinprob = derive2 { name="finiteruinprob"; version="0.6"; sha256="0z4l0crymh58chxniqq70fqmvi6f5jkgvz72vbc7s3l9lrrapgr3"; depends=[numDeriv sdprisk]; }; finity = derive2 { name="finity"; version="0.1.5"; sha256="0jsga609p1ja727k4bq7ffrs2h7ll3cfq27y4w6nh0qlc0gl99al"; depends=[BH Rcpp RcppArmadillo stabledist]; }; - finnishgrid = derive2 { name="finnishgrid"; version="0.1.0"; sha256="0gndrllz3y7yqrg5vw6ba7dg7hn4w3085rpy7h9hdd8swxqfvlc6"; depends=[httr jsonlite]; }; + finnishgrid = derive2 { name="finnishgrid"; version="0.2.0"; sha256="1p3kgrq85x48mmqn6m93m37qydnn0kpsikvp3ipg78s8b6l1cvzv"; depends=[httr jsonlite]; }; finnsurveytext = derive2 { name="finnsurveytext"; version="1.0.0"; sha256="0hi0b6i37lpfs2xhb0k1qdlm91mils1kl2dl9gz3qx5hz8f9342s"; depends=[dplyr ggplot2 ggpubr ggraph gridExtra igraph magrittr RColorBrewer stopwords stringr textrank tibble tidyr udpipe wordcloud]; }; finnts = derive2 { name="finnts"; version="0.4.0"; sha256="1cx9kl6dzkmrxb4i7vlkligx5p1q2jxinybmi1367hlpgafhv6js"; depends=[cli Cubist dials digest doParallel dplyr earth feasts foreach fs generics glmnet glue gtools hts kernlab lubridate magrittr modeltime parsnip plyr purrr recipes rsample rules snakecase stringr tibble tidyr tidyselect timetk tune vroom workflows]; }; finreportr = derive2 { name="finreportr"; version="1.0.4"; sha256="145idg2c6qmqp29afalnhxxzky08j21dmm05mp3zf63aq9mq41d4"; depends=[curl dplyr httr rvest XBRL xml2]; }; @@ -10168,7 +10336,7 @@ in with self; { firebehavioR = derive2 { name="firebehavioR"; version="0.1.2"; sha256="10krny60dkpgwjjnriap91qmrnfq1rl5ck4ynf4h6x016bv0m374"; depends=[ggplot2]; }; first = derive2 { name="first"; version="1.1"; sha256="13gzjxgbqjn227981sijkksbjkyh8fca9735zjq93w2mv2af3y87"; depends=[FNN twinning]; }; fishMod = derive2 { name="fishMod"; version="0.29"; sha256="0pbs4z27vwa3c42xdw3mr6l2i581bgvn2pk52kawbcnnlsff92ar"; depends=[]; }; - fishRman = derive2 { name="fishRman"; version="1.2.2"; sha256="09kzjcngycf1xvcyszqfsrn6iypn4n86cz0h2cmwv0i6hc8k0jwb"; depends=[config countrycode dplyr ggplot2 golem httr jsonlite maps sf shiny shinyBS shinyjs shinyWidgets viridis]; }; + fishRman = derive2 { name="fishRman"; version="1.2.3"; sha256="1pyryc6pilyy68z7443gi6ixi8b0hy338l9zfw74isrxywbygy8n"; depends=[config countrycode dplyr ggplot2 golem httr jsonlite maps sf shiny shinyBS shinyjs shinyWidgets viridis]; }; fishbc = derive2 { name="fishbc"; version="0.2.1"; sha256="15mlr113qgndjhyry8img50jfk0si81kw2cdgl896b0g4djc5la3"; depends=[]; }; fishdata = derive2 { name="fishdata"; version="1.0.1"; sha256="0hskmw93pyrm5wxn1dw8vi18v11jnf03yx375hjkk38hcfnp6n5k"; depends=[]; }; fisheye = derive2 { name="fisheye"; version="0.2.0"; sha256="0w07mkfdv422drrd80yjd9syicadyzl213n1xm1bkz1zlkhdw4xz"; depends=[sf]; }; @@ -10194,13 +10362,13 @@ in with self; { fitscape = derive2 { name="fitscape"; version="0.1.0"; sha256="0y9x0n61y366f35d594523l3c5sjaf87msxhnlbs2w3g7d53yvfb"; depends=[]; }; fitteR = derive2 { name="fitteR"; version="0.2.0"; sha256="0l33j69fdfpsp77a1vwqg07b65qaxs875r7lhy2bfi6mxgcklby9"; depends=[dplyr DT maxLik R_utils shiny]; }; fitur = derive2 { name="fitur"; version="0.6.2"; sha256="0bx1w1bpz3i2ybwl386s8y8nxyqwk6w33aqyyw94aq6ink3bw2aw"; depends=[actuar DT e1071 fitdistrplus ggplot2 goftest miniUI rstudioapi shiny]; }; - fitzRoy = derive2 { name="fitzRoy"; version="1.3.0"; sha256="1q728dn6s89f7zy4s1hhixqrvqi27gc225i6isiq5lk9md7pgydx"; depends=[cli dplyr glue httr jsonlite lifecycle lubridate magrittr progress purrr readr rlang rvest stringr tibble tidyr tidyselect xml2]; }; + fitzRoy = derive2 { name="fitzRoy"; version="1.4.0"; sha256="07qk0kgbsrpjkfm9jqd5zsyg1lj96fj31a413qn7y66vpyljd3p3"; depends=[cli dplyr glue httr httr2 jsonlite lifecycle lubridate magrittr purrr readr rlang rvest stringr tibble tidyr tidyselect xml2]; }; fivethirtyeight = derive2 { name="fivethirtyeight"; version="0.6.2"; sha256="0nja8zbbkrxrvznyi1c38yzv6djx58ac5y4l1nkf07ph5d9i3k81"; depends=[]; }; fixedTimeEvents = derive2 { name="fixedTimeEvents"; version="1.0.1"; sha256="18cqbxrs69p60anvii22mhqkwh5y2mxapmznff9g7j1j6h4h62lr"; depends=[]; }; fixedincome = derive2 { name="fixedincome"; version="0.0.5"; sha256="16wxd12hid468d1rfczyrb2ffnja0vx9mnqdg9dhdp0nlj78xx99"; depends=[bizdays ggplot2 scales]; }; fixedpointproperty = derive2 { name="fixedpointproperty"; version="1.0"; sha256="125vfk92mhixachg2qp5ffvf8ggvrfc62970vzmc8fiq83lbzgs1"; depends=[BayesFactor]; }; fixerapi = derive2 { name="fixerapi"; version="0.1.6"; sha256="0ikf8dn0l9c9gshp4bph3wasl0bh6lfybinc8n1rvb202231hmgb"; depends=[jsonlite tibble tidyr]; }; - fixest = derive2 { name="fixest"; version="0.11.2"; sha256="0r9b1shiwz4739hq953gacvmnjm9r4sisi9chkfw9rc90qx13vid"; depends=[dreamerr nlme numDeriv Rcpp sandwich]; }; + fixest = derive2 { name="fixest"; version="0.12.1"; sha256="1pqkwzcv8mjh00k0cl0na7izwhwsp6qpimbxmq5005vbhnwimrvw"; depends=[dreamerr nlme numDeriv Rcpp sandwich stringmagic]; }; fixr = derive2 { name="fixr"; version="0.1.0"; sha256="074dr1l3bw8v1lrih1mc51dmx02kambis04r9jpx64vnpajjfv8p"; depends=[httr RCurl xml2]; }; fixtuRes = derive2 { name="fixtuRes"; version="0.1.3"; sha256="1vmdbx1pfk4kcxq5q5hj4v6rz403xw66gpg6zpvrxkpcgkx2dwyz"; depends=[checkmate dplyr glue lubridate purrr R6 rlang stringi yaml]; }; fizzbuzzR = derive2 { name="fizzbuzzR"; version="0.1.1"; sha256="119gbi9y4n8r52hk9vj7zf795dv9xnk7lnngljjcd7ydnhygwd4h"; depends=[]; }; @@ -10218,14 +10386,16 @@ in with self; { flashlight = derive2 { name="flashlight"; version="0.9.0"; sha256="0nyxx7zrqw8fgy1n81n30m80z7xwkydnhmxj6c22mq83md08rd8c"; depends=[cowplot dplyr ggplot2 MetricsWeighted rlang rpart rpart_plot tibble tidyr tidyselect withr]; }; flashr = derive2 { name="flashr"; version="0.1.2"; sha256="0fqxr1j5mf9mc1agkkdlzx97qvv4phlxdcmb99x55ivhagwgvidq"; depends=[cli curl gh httr memoise revealjs rmarkdown testthat]; }; flatr = derive2 { name="flatr"; version="0.1.1"; sha256="10l98a3f57wahfpdqxj70r25zfhk4vzzd014pdnriy458yrfd7rw"; depends=[dplyr magrittr tibble]; }; - flattabler = derive2 { name="flattabler"; version="2.1.1"; sha256="1yls9md276fhz46mcfn676g24mk0rhyyfhkbysfs59fs58037s9j"; depends=[dplyr readr readxl stringr tibble]; }; + flattabler = derive2 { name="flattabler"; version="2.1.2"; sha256="0rjr5r32xsyxyk0h3xnnidxi4ymb136yfskjfcqny35p7c6kj2i4"; depends=[dplyr readr readxl stringr tibble]; }; flatxml = derive2 { name="flatxml"; version="0.1.1"; sha256="1qsiqi8aszk9djlhysf6lcm41dq4pcw5jv6mdvb1mgxni7g3sgfv"; depends=[crayon httr RCurl xml2]; }; fledge = derive2 { name="fledge"; version="0.1.2"; sha256="0x6f4xvaz6j86gn05hffimqpk5amhwqkvfzhk6252qp92x6rx33f"; depends=[brio cli desc gert purrr rematch2 rlang tibble usethis whoami withr]; }; flevr = derive2 { name="flevr"; version="0.0.4"; sha256="1h1wnqd1fv6z4mfrchm5rv9x9s48vp67csf3a8gyj7gm3lppgnfm"; depends=[caret dplyr kernlab magrittr mvtnorm ranger rlang SuperLearner tibble]; }; flexCWM = derive2 { name="flexCWM"; version="1.92"; sha256="1fxwq12mki10ikf5lyh1pb58svfzs4llg68v4d9iznia8aa0grhq"; depends=[ContaminatedMixt mclust numDeriv statmod]; }; - flexclust = derive2 { name="flexclust"; version="1.4-1"; sha256="13akk3w6a76jpws5v9108c3hdmb8i6gm0sc06lr2hqly0pgpfyfn"; depends=[class lattice modeltools]; }; + flexOR = derive2 { name="flexOR"; version="1.0.0"; sha256="06cipvv3wlbk2qk61a7yhfpmd1csr86sz5gligv0bxki9vc94n29"; depends=[gam mgcv]; }; + flexclust = derive2 { name="flexclust"; version="1.4-2"; sha256="0massgyn8vdzp40dz5l02qqzjynw1lgyw9psvb792q73j7b20iqc"; depends=[class lattice modeltools]; }; flexdashboard = derive2 { name="flexdashboard"; version="0.6.2"; sha256="0zxyrfp1inv19palaba81pxlq0nz655hcliynvh995a58cvg6c5n"; depends=[bslib htmltools htmlwidgets jsonlite knitr rmarkdown sass scales shiny]; }; flexiblas = derive2 { name="flexiblas"; version="3.4.0"; sha256="1n0wvq0aijpyscrs6rawx3pbrb1d4ni9myifnwnhy642qyc2v41i"; depends=[]; }; + flexlsx = derive2 { name="flexlsx"; version="0.2.1"; sha256="1h78gzq1nlz0d8m9l63d5mjxrqwzwh21l444az58d9y48zsgrrzv"; depends=[dplyr openxlsx2 purrr rlang stringi tibble tidyr]; }; flexmet = derive2 { name="flexmet"; version="1.1"; sha256="1xcs4gs5aanvfsf6bgj28jsjdxrx0dz475xsw8hd6y44qdgw1sqb"; depends=[]; }; flexmix = derive2 { name="flexmix"; version="2.3-19"; sha256="1s8jpii6ws6hra8w11fn3x84wrdrrlycnrhn5ijy6ibdpc6a9xdd"; depends=[lattice modeltools nnet]; }; flexmixNL = derive2 { name="flexmixNL"; version="0.0.1"; sha256="0bk5v0cnsn1qkd1b86vj0bnpr4l9d6523kpkgzb1l1sqyscawfmm"; depends=[flexmix gnm]; }; @@ -10233,19 +10403,19 @@ in with self; { flexpolyline = derive2 { name="flexpolyline"; version="0.3.0"; sha256="1p23s30gyh6wyg6vk4cj897dy1ijl0nix8gzypglg7z5v5xnhkyr"; depends=[Rcpp sf]; }; flexrsurv = derive2 { name="flexrsurv"; version="2.0.18"; sha256="10l1xh43c7lkgxjpxis5zy66dji2ifxhc41vzqhpj8h6hqw052bv"; depends=[Epi Formula formula_tools Matrix numDeriv orthogonalsplinebasis R_utils statmod survival]; }; flexsiteboard = derive2 { name="flexsiteboard"; version="0.0.7"; sha256="0msbz3x7lsi6xcw8dcqzwnylaj76f8mgj6cf3hqscrfjzhs86rym"; depends=[flexdashboard htmltools htmlwidgets jsonlite knitr rmarkdown yaml]; }; - flexsurv = derive2 { name="flexsurv"; version="2.2.2"; sha256="1qshsii5fqpx4l113vr4lx9ijxhcr8494lx3ixjdbzy58077adb6"; depends=[assertthat deSolve dplyr generics ggplot2 magrittr Matrix mstate muhaz mvtnorm numDeriv purrr quadprog Rcpp rlang rstpm2 statmod survival tibble tidyr tidyselect]; }; + flexsurv = derive2 { name="flexsurv"; version="2.3"; sha256="1y31ghfn02fcpss3aliy5r7kk0a7h0h2krnj665h13y8jgqkc6j7"; depends=[assertthat deSolve dplyr generics ggplot2 magrittr Matrix mstate muhaz mvtnorm numDeriv purrr quadprog Rcpp rlang rstpm2 statmod survival tibble tidyr tidyselect]; }; flexsurvcure = derive2 { name="flexsurvcure"; version="1.3.1"; sha256="0mhpzcrqxsi7f2m565qy648vg26rsvy7d249ia7y7kd5wcildw8b"; depends=[boot flexsurv survival]; }; - flextable = derive2 { name="flextable"; version="0.9.5"; sha256="14mq27k7998405qwpdpxa1csbf5pdgzj9s892xm95bd4chnshdvw"; depends=[data_table gdtools htmltools knitr officer ragg rlang rmarkdown uuid xml2]; }; + flextable = derive2 { name="flextable"; version="0.9.6"; sha256="0acjiwrm0qn0i0v4p0n279ldvlknqhb43mcar9c5s6r3xh5habi3"; depends=[data_table gdtools htmltools knitr officer ragg rlang rmarkdown uuid xml2]; }; flifo = derive2 { name="flifo"; version="0.1.5"; sha256="03x66l3ryrjvwbxxd0ncjrb5w9kc7fswmp5psb1cb7r87f395gm3"; depends=[bazar pryr]; }; flightplot = derive2 { name="flightplot"; version="0.1.0"; sha256="1276lsahr9kdsvp1ismm3b5syvhfr7ifizzd79f8w1h2rjblva8x"; depends=[dplyr geosphere ggplot2 ggrepel magrittr rlang sf tibble]; }; - flightsbr = derive2 { name="flightsbr"; version="0.4.0"; sha256="17i5v7v9ccp4wn9amzw0iv157q0x3nlx2qc8mr3npma4wshf7rvr"; depends=[data_table httr parzer pbapply rvest]; }; + flightsbr = derive2 { name="flightsbr"; version="0.4.1"; sha256="0rb14dfs8sckp4r0wxwbgi8zs2a9r879xhbgdi5nzpmhpsy62xma"; depends=[data_table httr parzer pbapply rvest]; }; flimo = derive2 { name="flimo"; version="0.1.5"; sha256="00l0w9z1j2yy4sl1fly7lw4rrdwcwnb26va2d5vsvjldwcmsx5pd"; depends=[ggplot2 JuliaConnectoR]; }; flintyR = derive2 { name="flintyR"; version="0.1.0"; sha256="1md0p3i9lny5sn1jjh8ss6bw4w7q8ydi6kh5smjbbgbn86qlcvwy"; depends=[assertthat doParallel foreach Rcpp RcppArmadillo testthat]; }; flip = derive2 { name="flip"; version="2.5.0"; sha256="08x5hwxaxbgc745gblja7gcy0b5wbp7jf90lkha75zl5cc9iyksl"; depends=[cherry e1071 plyr someMTP]; }; flipbookr = derive2 { name="flipbookr"; version="0.1.0"; sha256="0ls51risk3qn5fagw31i2kibrxk7xk3845a1cccd83sc4c8ilgjx"; depends=[dplyr glue knitr magrittr purrr rmarkdown stringi stringr tibble tidyr]; }; flipdownWidgets = derive2 { name="flipdownWidgets"; version="0.1.0"; sha256="1qlpav9s51w9nkszfkad87cfbc7jq4n0kmgis8hrin093w0whp7a"; depends=[htmlwidgets]; }; flipdownr = derive2 { name="flipdownr"; version="0.1.1"; sha256="18z6y9anwg264gwqpxvm8mmv7xvc4m323mkg9db424vd1ji560f3"; depends=[checkmate glue htmltools jsonlite]; }; - flippant = derive2 { name="flippant"; version="1.5.4"; sha256="189c7mm56rhwh4d1lrfbp9gn4l4vhi6i0cn9zif6s5c7yryvf3l9"; depends=[assertive_base assertive_files assertive_numbers data_table ggplot2 magrittr minpack_lm plyr pracma stringi withr]; }; + flippant = derive2 { name="flippant"; version="1.5.5"; sha256="0sr5mksgfn06jvx3rbc03dhmh9l7w1s6nz609yyw3rgc7snd1w57"; depends=[data_table ggplot2 magrittr minpack_lm plyr pracma stringi withr]; }; flipr = derive2 { name="flipr"; version="0.3.3"; sha256="188kdgk390rh8wpfsvqbwpwa3dmwzlzv8sdgvfxl9f0ddbxasghb"; depends=[cli dials ggplot2 magrittr optimParallel pbapply purrr R6 Rcpp rgenoud rlang tibble usethis viridisLite withr]; }; flipscores = derive2 { name="flipscores"; version="1.2.0"; sha256="17dmx7r29ngwz690x7p447pczh903swzpwmk5abvzjsqvfgikbi8"; depends=[MASS]; }; float = derive2 { name="float"; version="0.3-2"; sha256="149affr0swb1vqnhkzm5lr4knfsh78ygswy123j1qj823zbhsfi3"; depends=[]; }; @@ -10254,13 +10424,13 @@ in with self; { flocker = derive2 { name="flocker"; version="1.0-0"; sha256="19029by01jgwdlc0m4d05cfia8v0zfxf6k4aqm6wpvlbi7ap6hi6"; depends=[abind assertthat boot brms loo MASS matrixStats withr]; }; flood = derive2 { name="flood"; version="0.1.1"; sha256="0nlmjh2l7dij1aqd70hhj0m550knlin3am14azqkx4pacs1kir3p"; depends=[copula evd magrittr TLMoments]; }; flora = derive2 { name="flora"; version="0.3.4"; sha256="17drlfvvrndal4cf5nw20xb9viybagvb4vll1kxdrhvsvfz5yap6"; depends=[dplyr httr jsonlite stringdist]; }; - florabr = derive2 { name="florabr"; version="1.1.0"; sha256="1sfyprf2rz5z0vfa7mhw70w4chg9jf4rwgi8hxywb0srbdf738c5"; depends=[data_table httr terra XML]; }; + florabr = derive2 { name="florabr"; version="1.2.0"; sha256="0rfzvrsv4aai3ynwxvnqiki58gbjp4lwrr36kfnkn59bpicvxmzg"; depends=[data_table httr terra XML]; }; flow = derive2 { name="flow"; version="0.2.0"; sha256="171csdpp445lxhh7ph59h7xxqxdpjlkf35nrjy74282m9xmqdlz9"; depends=[here htmlwidgets lifecycle nomnoml rstudioapi styler webshot]; }; flowTraceR = derive2 { name="flowTraceR"; version="0.1.0"; sha256="1nl7yfzsh3bhqdildb77wmnapich4xn6y2j8rlmrb4w7mq9jnhba"; depends=[comprehenr dplyr ggplot2 magrittr stringr tibble tidyr]; }; - flowchart = derive2 { name="flowchart"; version="0.1.0"; sha256="003miaakn8bbx6fnhlwvl2p3303hygckma2fdwkzgmzd44xwv36k"; depends=[dplyr Gmisc purrr rlang stringr tibble tidyr tidyselect]; }; + flowchart = derive2 { name="flowchart"; version="0.4.0"; sha256="1h34phpgx139v28rxgiyjl696k08lp7frh3sxizj97pix29j5yds"; depends=[dplyr Gmisc purrr rlang stringr tibble tidyr tidyselect]; }; flowml = derive2 { name="flowml"; version="0.1.3"; sha256="1v26lncq6qqx7x2wnvaxwb88s7hgdwj9cv16kkzn4fnybwsmkw5g"; depends=[ABCanalysis caret data_table dplyr fastshap furrr future magrittr optparse purrr R6 readr rjson rlang rsample stringr tibble tidyr vip]; }; flowr = derive2 { name="flowr"; version="0.9.11"; sha256="1cbbfrvgzqclvbhy20vjwgxbvnn3ljh0k1k54jf2si10bfw3zzi5"; depends=[diagram params readr whisker]; }; - flps = derive2 { name="flps"; version="1.0.0"; sha256="0l4maf51psfmf3wq86r2zpvcm29car4z7jn7xh2mp8kllb7ii59d"; depends=[ggplot2 glue MASS mirt mvtnorm Rcpp rstan]; }; + flps = derive2 { name="flps"; version="1.1.0"; sha256="0pdf4czw5rdf5bcsbq7ncx0m5iz9dl0m5l8z3x799zs1svdlclfp"; depends=[ggplot2 glue MASS mirt mvtnorm Rcpp rstan]; }; flsa = derive2 { name="flsa"; version="1.5.5"; sha256="000al9xan9brrg5c010csyg06jan55x7lg6zxsxc65dcxz4hmzg2"; depends=[]; }; fluidsynth = derive2 { name="fluidsynth"; version="1.0.0"; sha256="04jn17rxafrw47gc98c5k4jzsbdsml0brq85zr7xvijirnd15yxn"; depends=[av rappdirs]; }; fluoSurv = derive2 { name="fluoSurv"; version="1.0.0"; sha256="1dv4lf7k28bih2qqkpy15f7d14ibxk48p3z6sj3dj5yvh25mhv81"; depends=[]; }; @@ -10273,16 +10443,17 @@ in with self; { fmcmc = derive2 { name="fmcmc"; version="0.5-2"; sha256="0swlghwsir1gjw5n2c8kfi5zh6bbqjhk7nnjds2b6656s8xdpr9a"; depends=[coda MASS Matrix]; }; fmdates = derive2 { name="fmdates"; version="0.1.4"; sha256="1bbcwkh65nf2gak9b81zgg32c5ihwhmai3nc43ayf6ivhqsxw8x0"; depends=[assertthat lubridate]; }; fmdu = derive2 { name="fmdu"; version="0.1.1"; sha256="0g27a19kw23niqbj3jx5y9p1a693zi69nnfraj85mmfkyhmqilpi"; depends=[smacof]; }; - fmeffects = derive2 { name="fmeffects"; version="0.1.2"; sha256="1rnv988hngvxcjnvfymnnpf3ilxhsgh56x18bjh9ca5s0f0nl9iv"; depends=[checkmate cowplot data_table ggparty ggplot2 partykit R6 testthat]; }; + fmeffects = derive2 { name="fmeffects"; version="0.1.3"; sha256="0hw3jsq4s4rh66n9j3sll9sarnnbxp90ma6sqs9q4gjkm1qi1d1p"; depends=[checkmate cli cowplot data_table ggparty ggplot2 partykit R6 testthat]; }; fmerPack = derive2 { name="fmerPack"; version="0.0-1"; sha256="0p9jfgkzs97r6ya1x8ax7bza17b03grqxa22ja13s12vj0cdkv78"; depends=[abind flexmix glmnet MASS Rcpp RcppArmadillo]; }; - fmesher = derive2 { name="fmesher"; version="0.1.5"; sha256="0pzqj6br5cqzqmrdlmk3d0j025519hlabgmgh02inzg8i25azxzn"; depends=[dplyr lifecycle Matrix Rcpp rlang sf sp tibble withr]; }; + fmesher = derive2 { name="fmesher"; version="0.1.6"; sha256="0dszz7a6asyjwwgq8ggqll48ndyfn14lndf77arl60ns3h7v3ygn"; depends=[dplyr lifecycle Matrix Rcpp rlang sf sp tibble withr]; }; fmf = derive2 { name="fmf"; version="1.1.1"; sha256="0b26040a39jys1z3h9mq9k7rjr0iyiialq442ir8vgzvmrh383cs"; depends=[C50 caret dplyr e1071 factoextra FactoMineR ggplot2 kernlab Rcpp RcppArmadillo solitude]; }; fmpcloudr = derive2 { name="fmpcloudr"; version="0.1.5"; sha256="07fvmrprv0pka1wgp5ygcvv86jvn3h30xxkx44ssin15hfmank69"; depends=[dplyr httr jsonlite lubridate magrittr tidyr]; }; fmri = derive2 { name="fmri"; version="1.9.12"; sha256="1cv5mxcdpyf05n5pcjdawl59j7f4k40386r4m38qf15vcy45zdfq"; depends=[aws metafor nlme oro_nifti]; }; fmriqa = derive2 { name="fmriqa"; version="0.3.0"; sha256="1z09nf1c305a78c129jvs21b9z91wyhazz41wrn4bimmhfhx7szv"; depends=[ggplot2 gridExtra imager optparse pracma RcppEigen reshape2 RNifti tidyr viridisLite]; }; fmsb = derive2 { name="fmsb"; version="0.7.6"; sha256="1cnkg4njb432p05j8hdwfa2swiynwm864yixgfbyr26r8jfz4zg5"; depends=[]; }; fmt = derive2 { name="fmt"; version="2.0"; sha256="04df84979a8vaacfhxsb58zci1mmh113ir7qnkniv5qnyvdabacm"; depends=[limma]; }; - fmtr = derive2 { name="fmtr"; version="1.6.3"; sha256="0xgyg9kgak6w3p8lp0ccnkp90bnh516py0sn07nxh6pjbv2rkng0"; depends=[common crayon Rcpp tibble]; }; + fmtr = derive2 { name="fmtr"; version="1.6.5"; sha256="1q565knjq8hzazli5skjvfd02jsh2c220hsrvc1h4dly666qvxvl"; depends=[common crayon Rcpp tibble]; }; + fmx = derive2 { name="fmx"; version="0.1.2"; sha256="02f4b9vmnp2gr47ql6smxiv7x9as6p44fi4kvg6lcn1xd386hx6z"; depends=[goftest param2moment sn TukeyGH77 VGAM]; }; fnets = derive2 { name="fnets"; version="0.1.6"; sha256="138r081mpgw1csm93xcrci3djd7mrcl6drsdr6cpjz1fdzv1whjy"; depends=[doParallel fields foreach igraph lpSolve MASS RColorBrewer]; }; focusedMDS = derive2 { name="focusedMDS"; version="1.3.3"; sha256="18s86dbbpyajscqr9frprf2vp1zif7vh4lw5m0cjskfc6gmsdp2p"; depends=[htmlwidgets]; }; foghorn = derive2 { name="foghorn"; version="1.5.2"; sha256="1xmyl4m2chv2z6adfyzmv93zqjl0pxk364zy0jfym8vgnzrmcb26"; depends=[clisymbols crayon curl httr2 rlang rvest tibble xml2]; }; @@ -10318,6 +10489,7 @@ in with self; { forecasteR = derive2 { name="forecasteR"; version="2.0.2"; sha256="0pwgkkzyfzjjp9qrx4xx3b68617a18i3an3gcpprkg4mwpsvcj0x"; depends=[colourpicker config DT echarts4r forecast golem htmltools htmlwidgets keras lubridate rlang shiny shinyAce shinycustomloader shinydashboard shinydashboardPlus shinyjs stringr zoo]; }; foreign = derive2 { name="foreign"; version="0.8-86"; sha256="1qf3x1vacc4sdcmw4mbh0251ii4xd8z1xmmd9isak75j100i4ad7"; depends=[]; }; forensIT = derive2 { name="forensIT"; version="1.0.0"; sha256="0zbkkdm3wzzqsg7m6854lisskql0v5k9sg1ly1z479w5iqknh7bl"; depends=[doParallel dplyr fbnet foreach forrel ggplot2 gtools hrbrthemes iterators magrittr mispitools paramlink pedprobr pedtools reshape2 tidyr]; }; + forensicolors = derive2 { name="forensicolors"; version="1.0.0"; sha256="1ga67n7zvcbi3lq4v7x1yz2xhsxvxrxqdaxdha3dl112lgzvq790"; depends=[dplyr forrel ggplot2 pedtools plotly]; }; forestControl = derive2 { name="forestControl"; version="0.2.2"; sha256="0g81ml12xhq2a868vlpsybpsqz7p4hn9jnxh3dvq6g4k1hc1292x"; depends=[dplyr magrittr purrr Rcpp tibble]; }; forestError = derive2 { name="forestError"; version="1.1.0"; sha256="1dk19sgx760ph464cya4gxb1i3rpnydnhrbqyb25jja0dryjapcm"; depends=[data_table purrr]; }; forestHES = derive2 { name="forestHES"; version="1.0-1"; sha256="05l04ly3l8xkdz3rnnrfa4y0wfmh1am2ixbz1vfarnqkc0zppwpj"; depends=[]; }; @@ -10329,23 +10501,23 @@ in with self; { forestmangr = derive2 { name="forestmangr"; version="0.9.6"; sha256="0l8av1vg8dyrb15m08gby13qfalwcfizfn3jc2avvga8inyag0c5"; depends=[broom car dplyr FinCal ggdendro ggplot2 ggpmisc ggthemes gridExtra magrittr miniUI minpack_lm plyr purrr rlang scales shiny systemfit tibble tidyr]; }; forestmodel = derive2 { name="forestmodel"; version="0.6.2"; sha256="0pl9r8j2qd00b9kl585b4k54kic5fvzc56i8cn3hm5yp2hrrwyws"; depends=[broom dplyr ggplot2 rlang tibble]; }; forestplot = derive2 { name="forestplot"; version="3.1.3"; sha256="0jbmhgbf167xi0lxqinf6m4gmh10r582bify1i731k9ywcc7psqk"; depends=[abind checkmate]; }; - forestploter = derive2 { name="forestploter"; version="1.1.1"; sha256="0l19pw5an8d2zn32r64b8a3b95krq9r083ziry5973wdm0nya2pw"; depends=[gridExtra gtable]; }; + forestploter = derive2 { name="forestploter"; version="1.1.2"; sha256="15wx7kjawr11hajq4s1b7wv5klwzmyjn5ad6x8g4kwxvzlgzk2bl"; depends=[gridExtra gtable]; }; forestr = derive2 { name="forestr"; version="2.0.2"; sha256="1kz8f3x2dmsprj2r23gz61fpwg7n14nbjxr16x4cpixvnk427p94"; depends=[dplyr ggplot2 moments plyr tibble tidyr viridis]; }; forestry = derive2 { name="forestry"; version="0.1.1"; sha256="0bg41sja0aq8fdhxbla676bq1m1xjk2jaybcl0qfj2kc33pdivkx"; depends=[data_tree]; }; foretell = derive2 { name="foretell"; version="0.2.0"; sha256="18vi438n480gizfhnciw67gngvbjnmky19186b1wy75av7fgc1gp"; depends=[nloptr]; }; forge = derive2 { name="forge"; version="0.2.0"; sha256="0pjfzsc35agkh0zfw2czwajkbsyn6liys5irl5bhz5r1vim3jmwa"; depends=[magrittr rlang]; }; formatBibtex = derive2 { name="formatBibtex"; version="0.1.0"; sha256="0abqvjmpnlrxzlmqcixbds10q7ssg7x2wdx1qqpy1ix2snd23s7w"; depends=[]; }; formatR = derive2 { name="formatR"; version="1.14"; sha256="0k271w4bhlj7r9igkiyfw7d7bg30s2mn4sr4alb8f9w57wnapfjf"; depends=[]; }; - formatdown = derive2 { name="formatdown"; version="0.1.3"; sha256="126i9lfwhn557c9hxm61f60c5xynwlry7f6gzs3ivdb3ak95j1cc"; depends=[checkmate data_table units wrapr]; }; + formatdown = derive2 { name="formatdown"; version="0.1.4"; sha256="0dvq0hal2iy3k2mhqkfbaawny4q1ykwclag2fv9fpmnwniyh7629"; depends=[checkmate data_table settings units wrapr]; }; formattable = derive2 { name="formattable"; version="0.2.1"; sha256="1vdxi0xmg019qyzjrp8bkjxciz245jcxsrkhfzd44ynqcwi4s3ag"; depends=[htmltools htmlwidgets knitr rmarkdown]; }; - formatters = derive2 { name="formatters"; version="0.5.5"; sha256="0ay753n018v3idn3q07i8jv68322ia3x5smpz8gkfv7k892y8a4f"; depends=[checkmate htmltools]; }; - formods = derive2 { name="formods"; version="0.1.3"; sha256="1zvriii32s17mr1nyckbqr63g6rf90x2r6fxsbk9sa8imci272iq"; depends=[cli digest dplyr ggforce ggplot2 onbrand readr readxl rhandsontable rlang shiny shinyAce shinyWidgets stringr writexl yaml zip]; }; + formatters = derive2 { name="formatters"; version="0.5.6"; sha256="1mq84hj9la0m0007l9l1bzc7abrk5mg5hv4jbv5kp8nwwax5dx5g"; depends=[checkmate htmltools]; }; + formods = derive2 { name="formods"; version="0.1.6"; sha256="1qawvl10g9zpbph8psndqwizx10pl74d0bhizqcl509zaws4pb95"; depends=[cli digest dplyr ggforce ggplot2 onbrand readr readxl rhandsontable rlang shiny shinyAce shinyWidgets stringr writexl yaml zip]; }; formula_tools = derive2 { name="formula.tools"; version="1.7.1"; sha256="15d3ikfmsh9zszfgfkrxb3jkipl41inm7n6bhs73kwlnklnygq2g"; depends=[operator_tools]; }; formulaic = derive2 { name="formulaic"; version="0.0.8"; sha256="1nx6a73vw2hjbnqaw8x17ghhljd6z2avxv4arz3c3785pyayhg9k"; depends=[data_table]; }; formulops = derive2 { name="formulops"; version="0.5.0"; sha256="1mkpv5xjykrhgknq0gh4yg2a3j4xb8q2d6dh0wv8zd9h59hvrzda"; depends=[]; }; forplo = derive2 { name="forplo"; version="0.2.5"; sha256="066hpd5jfs8nfd5fbxh049apd93pz8ibzr2kqlssx4c9fziwbg40"; depends=[]; }; forrel = derive2 { name="forrel"; version="1.6.1"; sha256="1xq94rn86nclh0935jqxvlbqjx5qi0mdj9i6b9sb2qbzjjnm1gcl"; depends=[glue pedFamilias pedprobr pedtools ribd]; }; - forsearch = derive2 { name="forsearch"; version="5.1.0"; sha256="1nbm127dpb8488234fspbpcl1nz8xdn2f7nxkh6ld3jy9m3f24sa"; depends=[Cairo formula_tools ggplot2 Hmisc nlme survival tibble]; }; + forsearch = derive2 { name="forsearch"; version="6.0.0"; sha256="1x2q13wmdczyn9lwrmrissc2cp001ca3gyyvy32vjg3844arxckk"; depends=[Cairo formula_tools ggplot2 Hmisc nlme survival tibble]; }; forstringr = derive2 { name="forstringr"; version="1.0.0"; sha256="0x3nrvazzapvx8nfjyp7a0d1n2qs3mpbnfqj07rv4kxyw47p93iy"; depends=[dplyr glue rlang stringr tidyselect]; }; fortunes = derive2 { name="fortunes"; version="1.5-4"; sha256="109ly9kpfn6hy294ava8795wy5z9l1bnl98hhhv8kn9naf4camdg"; depends=[]; }; forward = derive2 { name="forward"; version="1.0.6"; sha256="12yk2l9cjmlr9089a8qw8arpdq997c9d9nx5xsy2x76ik65r6i3l"; depends=[MASS]; }; @@ -10358,7 +10530,7 @@ in with self; { fourierin = derive2 { name="fourierin"; version="0.2.5"; sha256="1rl1h433m1kw1jnwb1fqq9vc1qixyz6zd7jzmm4h51xf8mz8r463"; depends=[Rcpp RcppArmadillo]; }; fpCompare = derive2 { name="fpCompare"; version="0.2.4"; sha256="0w15ylisx7md3nyclqbd13n23f2r36875pdiskav4rry28m892bi"; depends=[]; }; fpa = derive2 { name="fpa"; version="1.0"; sha256="0kgpl9qq0l10h0vdd2f8vnir0kdylh1jvvv5z4d9ygj1pl9qywhk"; depends=[fields reshape]; }; - fpc = derive2 { name="fpc"; version="2.2-11"; sha256="06j1dzlf96qcaiqg8m5iah9rmwdppky04xjhs8k4rh0k12wr0mc2"; depends=[class cluster diptest flexmix kernlab MASS mclust prabclus robustbase]; }; + fpc = derive2 { name="fpc"; version="2.2-12"; sha256="11s7211mnb9c72061mrcdfdwfph6nmbwcnpjgl32i2p7qys9cnam"; depends=[class cluster diptest flexmix kernlab MASS mclust prabclus robustbase]; }; fpcb = derive2 { name="fpcb"; version="0.1.0"; sha256="086060z6r79m527bb9ah6yk2z15xq8x27gyvbz23xbm6mhrxsa1y"; depends=[FNN]; }; fpeek = derive2 { name="fpeek"; version="0.1.2"; sha256="0kv46g21ndxchg3q8ynq7hjjkh6i2zlc21axn5y1jjzigrw047ii"; depends=[Rcpp]; }; fpest = derive2 { name="fpest"; version="0.1.1"; sha256="013r8295spm02j558aqvnrnbkg2g73gl5vi4lqzngbw8yr8qlkri"; depends=[]; }; @@ -10373,7 +10545,7 @@ in with self; { fptdApprox = derive2 { name="fptdApprox"; version="2.5"; sha256="013wspkb7n3lcn5z1pfsqwfgzm0rjfswski9550indy2vv4n4qni"; depends=[]; }; fqacalc = derive2 { name="fqacalc"; version="1.1.0"; sha256="1n4vlz75d2jsl3chsarmgf5cg7zj06gxgn1mj79d85z86pn4jip3"; depends=[dplyr fqadata magrittr rlang]; }; fqadata = derive2 { name="fqadata"; version="1.1.0"; sha256="1nxqq33j396wa12n3qwfrsh9l2g2pn2f9d25vfzihh3xnsbk0cv5"; depends=[]; }; - fqar = derive2 { name="fqar"; version="0.5.1"; sha256="1fdzx91n0k49zjggwiamln86d7j4ghqx6gbqp158g7plwbd8hmgz"; depends=[dplyr ggplot2 httr jsonlite memoise rlang tidyr tidyselect]; }; + fqar = derive2 { name="fqar"; version="0.5.3"; sha256="08cz7bax680kgxcyw8gyk6b206n310a8p1zx9kzlq5sb2a1c1ivr"; depends=[dplyr ggplot2 httr jsonlite memoise rlang tidyr tidyselect]; }; fr = derive2 { name="fr"; version="0.5.1"; sha256="0kj7qjv6jdrp8wm7ynpi4mjm4sx9b2aqnhqb0pn1xnpbsj9x7557"; depends=[cli dplyr purrr rlang S7 tibble tidyselect vroom yaml]; }; frab = derive2 { name="frab"; version="0.0-3"; sha256="08nlhshg3bz8b830vl877xyyjgngxk7sf5vp5d0np3bfhrylh0wv"; depends=[disordR mathjaxr Rcpp]; }; fracdiff = derive2 { name="fracdiff"; version="1.5-3"; sha256="1h3zpy6j6w4w09nfh42jb58q0z5l3g4s556hza9zzzlj81mr940g"; depends=[]; }; @@ -10389,7 +10561,6 @@ in with self; { frailtyHL = derive2 { name="frailtyHL"; version="2.3"; sha256="115iv1d2c9mvviick8b24bn6kdbsvnf21nvfjm9a8dk0x07hrv5g"; depends=[cmprsk Matrix survival]; }; frailtyMMpen = derive2 { name="frailtyMMpen"; version="1.2.1"; sha256="03d3mlbwvpqjgxgw4cqy2502lx4gh8fvf7sbcq06w8yjljffn0a0"; depends=[mgcv numDeriv Rcpp RcppGSL survival]; }; frailtySurv = derive2 { name="frailtySurv"; version="1.3.8"; sha256="1k1pxn47gglkcjzix3h1vn9z631ms6icgv5df6pb90008qmilck7"; depends=[ggplot2 nleqslv numDeriv Rcpp reshape2 survival]; }; - frailtypack = derive2 { name="frailtypack"; version="3.6.0"; sha256="03hm6kala923fr02sjmysm2ycxbynsp3h43f8mlw8agi52hf9nz2"; depends=[boot doBy MASS nlme rootSolve shiny statmod survC1 survival]; }; frair = derive2 { name="frair"; version="0.5.100"; sha256="1j557dqvc5xiz7xbl4h7vp55pc3hly8ci01qy36p02vlxhzf4hj3"; depends=[bbmle boot lamW]; }; framecleaner = derive2 { name="framecleaner"; version="0.2.1"; sha256="1qy58v9rgrzzqwqp2wrv89rcsp22dqm7c7w2bbcr9jmhb1yb5q67"; depends=[bit64 dplyr fastDummies forcats fs janitor lubridate magrittr purrr readr rio rlang rlist rstudioapi stringr tibble tidyselect vroom]; }; franc = derive2 { name="franc"; version="1.1.4"; sha256="0l41m53li2pvcac7m5y5gkvmw0qy5k3v0m2ljda9gdaasg5029xr"; depends=[jsonlite]; }; @@ -10398,18 +10569,20 @@ in with self; { frbs = derive2 { name="frbs"; version="3.2-0"; sha256="0biv6j31qi0f4i063ygmbp6v6ws1nxijn5kyhg5sz1rnbr0msl28"; depends=[]; }; frechet = derive2 { name="frechet"; version="0.3.0"; sha256="0lxzhkimyhnisbvfgv8l9vv4pzjj6igcy8fyx25is43g2cz35ymq"; depends=[boot corrplot e1071 fdadensity fdapace Matrix osqp pracma quadprog trust]; }; fredr = derive2 { name="fredr"; version="2.1.0"; sha256="0073qh0drf1p38hc84m54n35hyza90m8zn48ihx3alxkiq1m8ijp"; depends=[httr jsonlite rlang tibble]; }; - free = derive2 { name="free"; version="1.0.1"; sha256="0r9vd1d4pi19mnvdchx95axp0hiqs8lpgp0fn40dm89h5fd6zyb0"; depends=[Rcpp RcppArmadillo]; }; + free = derive2 { name="free"; version="1.0.2"; sha256="0lbgw3nx79x89r1n07hjwacfq11zk1wfg5w2dccwr3w8g9553wiw"; depends=[Rcpp RcppArmadillo]; }; freealg = derive2 { name="freealg"; version="1.1-1"; sha256="0jx9r40hql8fkpjr005snavj8fw5ykqa4ya7cy59jhxr31byma3j"; depends=[disordR mathjaxr partitions Rcpp]; }; freebird = derive2 { name="freebird"; version="1.0"; sha256="1rxn4xdp801sng3dzfwm7j001igkn51qx2kc4bcpbczdhb43bzaw"; depends=[MASS Matrix Rmosek scalreg]; }; freecurrencyapi = derive2 { name="freecurrencyapi"; version="0.1.0"; sha256="02j5jkx0hrv6brb1px782ilv4zlbnv4g2nc4a5d09lqxxvc09kjy"; depends=[httr jsonlite]; }; freedom = derive2 { name="freedom"; version="1.0.1"; sha256="1mrdl2cqdm2c68lx7lyixgiqw6xzwnx9c8j5q4annhiz107i9i22"; depends=[]; }; freegroup = derive2 { name="freegroup"; version="1.1-8"; sha256="1qrawy5zngiph1lg2bcczbq84vsfgpd74kbxy1nh7bp9ps1p5ga4"; depends=[freealg magic magrittr plyr]; }; + freesurfer = derive2 { name="freesurfer"; version="1.6.10"; sha256="1i687yj76gbassyldpgal33cxd2hixzl0779ql9fjsaibh5m1dc4"; depends=[neurobase R_utils reshape2]; }; freesurferformats = derive2 { name="freesurferformats"; version="0.1.18"; sha256="17g58abcp6fk20zdx0lzvb989g359nk1vl5drlfinfp6p1jjvsbj"; depends=[pkgfilecache xml2]; }; + freewall = derive2 { name="freewall"; version="1.0.0"; sha256="18f2f0dpn8jhvsfmr4mfjs359y64f312djmpj3f84yjwss4ch5kb"; depends=[htmltools htmlwidgets jquerylib]; }; frenchCurve = derive2 { name="frenchCurve"; version="0.2.0"; sha256="123dvjpny9avwwsgqhaa2f79796vjh8k018vgr8rx72ja2x9cy8f"; depends=[sp]; }; frenchdata = derive2 { name="frenchdata"; version="0.2.0"; sha256="13n0phncbxim9ak897hmjw1p7ph5wi3jn2m8hgmm3bywxbxcg1qz"; depends=[assertthat cli dplyr fs httr magrittr purrr readr rlang rvest stringr tibble tidyr]; }; freqdist = derive2 { name="freqdist"; version="0.1"; sha256="1pb45jabv9s3qa7v1isd5wm9b0g9p04q5h18spcaax8397s0d2fv"; depends=[]; }; freqdistributionNogives = derive2 { name="freqdistributionNogives"; version="0.1.1"; sha256="1y01yiyzgcsr8xcjgxq75ky8a6f4d2h3x82la3zcrczy7fplblq4"; depends=[]; }; - freqdom = derive2 { name="freqdom"; version="2.0.3"; sha256="0gq91zmai0jcn9wgddqkws9bvj5kx70kccnszhdzbdsh2irqjbgv"; depends=[matrixcalc mvtnorm]; }; + freqdom = derive2 { name="freqdom"; version="2.0.5"; sha256="0fs6hrm0jf5cqfsnfbp0m7lrzvryzi49fi6lmisrb7ql3a8jzkxa"; depends=[matrixcalc mvtnorm]; }; freqdom_fda = derive2 { name="freqdom.fda"; version="1.0.1"; sha256="1y9g85sp0w8rvhmsrln64bj1h03wkpgriqidc3pf123if58ap72m"; depends=[fda freqdom mvtnorm]; }; freqparcoord = derive2 { name="freqparcoord"; version="1.0.1"; sha256="011p8xh0i0x0w5rv5qz5a7fxwdhxd8l2bqi9bxv5almxd0y7ajqx"; depends=[FNN GGally ggplot2 mvtnorm]; }; freqpcr = derive2 { name="freqpcr"; version="0.4.0"; sha256="04s6yrzxk4v86nhs9mwam1y2lfac73r6i8af9xbbmrlzj61wiia9"; depends=[cubature]; }; @@ -10420,7 +10593,7 @@ in with self; { frequentistSSD = derive2 { name="frequentistSSD"; version="0.1.1"; sha256="1d54zr87795gm4qc6aw3nv9i83rhnhv14rcpkrivdxhxv8rnhnn9"; depends=[survival]; }; fresh = derive2 { name="fresh"; version="0.2.0"; sha256="1787mm6w2s5x9scxy7r9cb77rgpmy4ngwkn4z8g3gs48mrab4bd9"; depends=[htmltools rstudioapi sass shiny]; }; freshr = derive2 { name="freshr"; version="1.0.2"; sha256="1vzwdy5cssk9r3fvw0w1pxkn203whzycmvz9fdm08lkd538zwdnj"; depends=[]; }; - frictionless = derive2 { name="frictionless"; version="1.0.3"; sha256="1f0857jl1xq1v2pv6wv9nx7crm40r1p60gjbqlr9qi8nm3ikz8a8"; depends=[assertthat dplyr glue httr jsonlite purrr readr yaml]; }; + frictionless = derive2 { name="frictionless"; version="1.1.0"; sha256="0d23gbaikwhr7jac9b21p8a3hj1rwh766v752axikbq02hf3a6vg"; depends=[cli dplyr httr jsonlite purrr readr rlang yaml]; }; friends = derive2 { name="friends"; version="0.1.0"; sha256="164p9g07vq3xs2lgg250yvzca4b0mp81pqbnjfdkzcqh5hmahsan"; depends=[tibble]; }; fritools = derive2 { name="fritools"; version="4.3.0"; sha256="0l8h605c00a6fgkp4qr6rddwdrjs1ywjw982n90cjx2s6znrv966"; depends=[]; }; fritools2 = derive2 { name="fritools2"; version="4.1.0"; sha256="1gbji1nq1jgw2h6ll4qzxv6hwvlp3zbw1n9ljnjw4zmz031c3zjd"; depends=[]; }; @@ -10429,16 +10602,16 @@ in with self; { frontiles = derive2 { name="frontiles"; version="1.3.1"; sha256="0l9hyd5rmam5xqa717vcr4cj5fxdfxrjgfdfc6q04hnqzw09cg05"; depends=[colorspace rgl]; }; frostr = derive2 { name="frostr"; version="0.2.0"; sha256="1bsgdskdbyryq7jvhnb4z4xb1m5vadqv00qjlkgp41xh71wp2brs"; depends=[httr jsonlite tibble tidyr]; }; froth = derive2 { name="froth"; version="1.1.0"; sha256="188rprm37lppgkn1mf8qfgjsz55kvm29dkblnbf458g5339w7vz1"; depends=[]; }; - frscore = derive2 { name="frscore"; version="0.3.1"; sha256="1nfl6jzghr3zg63l3vzkpx8fpr2mz60nxikmssngbcbv6qfyi8i8"; depends=[cna dplyr lifecycle magrittr Rfast rlang]; }; + frscore = derive2 { name="frscore"; version="0.4.1"; sha256="1phmy313xl1x3v1smf6f19aa1sd0cypfn5hpg715k9p9z9sh58qq"; depends=[cna dplyr lifecycle magrittr Rfast rlang withr]; }; fruclimadapt = derive2 { name="fruclimadapt"; version="0.4.5"; sha256="0v9yh3q7sf0q8lwj89hr50f3s6m14c0azs0rbmykxmj18k376fwg"; depends=[data_table dplyr lubridate magrittr zoo]; }; - fs = derive2 { name="fs"; version="1.6.3"; sha256="0wgrq0vgaf9czjyzlxdmpy7swxcyd4mryks0gr5xk96pa0g0d0ps"; depends=[]; }; + fs = derive2 { name="fs"; version="1.6.4"; sha256="1j2sx9zxz0qcgvim8mvvjrl0z2qbn2j4idsivx7zadmy5l7jj1ky"; depends=[]; }; fsbrain = derive2 { name="fsbrain"; version="0.5.5"; sha256="0zm6gyc0a0ymx40qpwpm8v51mnp3m9si72smpwznnpgymlwh7r0s"; depends=[data_table fields freesurferformats magick pkgfilecache reshape rgl squash viridis]; }; - fscache = derive2 { name="fscache"; version="1.0.2"; sha256="0fxrz0mhhb38imk8hvngyzmvyagx1yhd4jfkrplwcrpyfbxbbdq5"; depends=[chk lgr R_utils R6 stringi]; }; + fscache = derive2 { name="fscache"; version="1.0.5"; sha256="0815z6a677ygiv4hlslmvbnd1pdnh2xz3sw0nzgrcr2vzj83h25x"; depends=[chk lgr lifecycle R_utils R6 stringi]; }; fscaret = derive2 { name="fscaret"; version="0.9.4.4"; sha256="18fhyfl3f8syyc3g937qx87dmwbv7dray6b97p1s6lnssiv61gsw"; depends=[caret gsubfn hmeasure]; }; fsdaR = derive2 { name="fsdaR"; version="0.9-0"; sha256="1jg8m5rdafzl9xw27knrnhyyq1y7ss4v0azm1q3rgqrxvfnqn7bg"; depends=[ggplot2 rJava]; }; - fsemipar = derive2 { name="fsemipar"; version="1.0.1"; sha256="0fj088wggbqjxsj1k143k0xwc62j5i082flmz808f728p7c5hrjk"; depends=[DiceKriging grpreg gtools]; }; + fsemipar = derive2 { name="fsemipar"; version="1.1.1"; sha256="1qcaaq0cnpl7f0fh4hj868ms7akkb74dlwwkkkjhbfdhxnp3wyni"; depends=[DiceKriging doParallel foreach ggplot2 gridExtra grpreg gtools parallelly tidyr]; }; fsia = derive2 { name="fsia"; version="1.1.1"; sha256="0id7cnswrqylgpwjil1zfn89ryrdpl20fim8x1srl8s1hm5bg35r"; depends=[]; }; - fslr = derive2 { name="fslr"; version="2.25.2"; sha256="0az215n4ra3g6v34cwv8rrjpjq8c9mx34fmjqk7icdwm2raw32vh"; depends=[neurobase oro_nifti R_utils]; }; + fslr = derive2 { name="fslr"; version="2.25.3"; sha256="0pp1hn80qknxg7w24qqgjq0y96i22qixsdgs2bkjylwh9zhxbg9x"; depends=[neurobase oro_nifti R_utils]; }; fsn = derive2 { name="fsn"; version="0.2"; sha256="12n1v8nhfn5pjjsrp41wk848yw797wxa9anx9dm8rd278smrk01f"; depends=[Rfast]; }; fso = derive2 { name="fso"; version="2.1-2"; sha256="15jvq063j05wpiwcm80zbnr1rf5g7xhv60qh3b8c43l398n4frhw"; depends=[labdsv]; }; fspe = derive2 { name="fspe"; version="0.1.2"; sha256="02pmrc6k9wi8ic26nxj66pzjp64ds36awaj3hx2zw3nnccgs7164"; depends=[corpcor psych]; }; @@ -10449,24 +10622,25 @@ in with self; { fstcore = derive2 { name="fstcore"; version="0.9.18"; sha256="00wzpr2i7s9pc3alvn4b8f1wgmfqplpwdif9rh9x8qqnylbixiqq"; depends=[Rcpp]; }; fsthet = derive2 { name="fsthet"; version="1.0.1"; sha256="0z6az1jcvdahgn97r6cpj1s6fn0lvr7j12gcw2r7wbpajrvyl5j6"; depends=[]; }; ftDK = derive2 { name="ftDK"; version="1.0"; sha256="1xs2rr2afjza97kpym5zkas3k78pilxjlh7lp1gc66banldr71g2"; depends=[dplyr httr pbapply purrr tibble]; }; - ftExtra = derive2 { name="ftExtra"; version="0.6.2"; sha256="0b21pm2aac24m79f6lh2si51s0i5ixzx36dva0m4wqwcvclg94ri"; depends=[dplyr flextable jsonlite magrittr purrr rlang rmarkdown stringr tibble tidyr tidyselect vctrs xfun yaml]; }; + ftExtra = derive2 { name="ftExtra"; version="0.6.4"; sha256="02sdhqjfzgbwwzv2dg6wbzhymklkrmxihs4nz83fi1585dv5kbyq"; depends=[dplyr flextable jsonlite magrittr purrr rlang rmarkdown stringr tibble tidyr tidyselect vctrs xfun yaml]; }; ftaproxim = derive2 { name="ftaproxim"; version="0.0.1"; sha256="0955zj99vkq82hc08wl17mk2ij1l30nqbcdikf87cx78a13zxy4w"; depends=[ggplot2 plyr]; }; ftrCOOL = derive2 { name="ftrCOOL"; version="2.0.0"; sha256="0jy0dhkf7hlrriz32abp0h52fw92i5k8x25bjqlzd0khyv2vhj0i"; depends=[]; }; ftsa = derive2 { name="ftsa"; version="6.4"; sha256="14s3qr8czycqgn6a462bmy575mn77lrhrb4ahpaa67m2xlcqpw4v"; depends=[boot colorspace e1071 ecp evgam fda fdapace fGarch forecast glue KernSmooth LaplacesDemon MASS pcaPP pdfCluster psych rainbow ROOPSD sde strucchange vars]; }; ftsspec = derive2 { name="ftsspec"; version="1.0.0"; sha256="12f9yws1r26i240ijq0xqprl3pgbw50wv68jsm75ycplbs2jsyhs"; depends=[sna]; }; - fude = derive2 { name="fude"; version="0.3.5"; sha256="11gzmgq7rknrhcskfs751f4snh4qcv3hfkqn6b95iv9zkcpar4gm"; depends=[dplyr forcats glue magrittr purrr rlang sf stringi tidyr]; }; + fude = derive2 { name="fude"; version="0.3.6"; sha256="06aacagrq4vjzq8r3xayyic8i0gjls7b7b94cnmspprh0bk9d7dw"; depends=[dplyr forcats glue magrittr purrr rlang sf stringi tidyr units]; }; fuel = derive2 { name="fuel"; version="1.2.0"; sha256="0pzb77g6l8cz5p7y6czck23kp7hs5zp78k87b5yh0avjlr7ads74"; depends=[]; }; fueleconomy = derive2 { name="fueleconomy"; version="1.0.0"; sha256="16a8wyliiidi6rw14ksimygfkl4a7yhxvss7l9bcvr1wfiplrn65"; depends=[]; }; fugue = derive2 { name="fugue"; version="0.1.7"; sha256="1myvi9cizxvahb6wn2k26v3x958xsrm2p414ar05injmfjdfnsmi"; depends=[]; }; - fuj = derive2 { name="fuj"; version="0.1.4"; sha256="1mw4cl6w2nl8f5sfxbvzhbzz2di6msfrdiz8vylqq12z4gzr6l11"; depends=[]; }; + fuj = derive2 { name="fuj"; version="0.2.1"; sha256="0ls63rhlwkfn145c34qgng5n8h0av092jkid5gy8fq7mj1ycflwd"; depends=[]; }; fullROC = derive2 { name="fullROC"; version="0.1.0"; sha256="0pn4lh59snfcyyi28350lm4n9xh6y25hpjr38dc33bic4cfbqiyr"; depends=[]; }; fullfact = derive2 { name="fullfact"; version="1.5.2"; sha256="1x62zxqi99i91n1j8rsmxp6k614rq34r8l9qhszz3a9z32yi9mf6"; depends=[afex lme4]; }; fun = derive2 { name="fun"; version="0.3"; sha256="09601ma4irmpkgjspq6zmr383m1pbgyfdkf7gw8w8gp0q7ab89aq"; depends=[]; }; funData = derive2 { name="funData"; version="1.3-9"; sha256="0kf1q60z10f3gcw9132i9q3qd3z3idxw34cdklv3w56v8j14g63b"; depends=[abind fields foreach]; }; funFEM = derive2 { name="funFEM"; version="1.2"; sha256="17pw743qnljwasj4cg8m8sg9j6piy7g69jr57aqmbizlfdqvvl05"; depends=[elasticnet fda MASS]; }; - funGp = derive2 { name="funGp"; version="0.3.2"; sha256="1r648syb2l8n53if3cww5jpyl3rrhg36q0fldmsp1nb1xhqqk6vg"; depends=[doFuture doRNG foreach future knitr microbenchmark progressr scales]; }; + funGp = derive2 { name="funGp"; version="1.0.0"; sha256="1g9zcmg5vbbypznn3qbrqb8xg6phs1m522wf1zk3b401wf198q50"; depends=[doFuture doRNG foreach future knitr microbenchmark progressr scales]; }; funLBM = derive2 { name="funLBM"; version="2.3"; sha256="0aa9h6nbxbvd6iq4q00rndhvb6sq79lpdgr3zwz0lcgjx6p56s5g"; depends=[abind fda funFEM ggplot2]; }; - funStatTest = derive2 { name="funStatTest"; version="1.0.2"; sha256="1dqp4yh01w8xdbjhjzxrx33w0hgxcm5a43r27q17m34hqiv33y34"; depends=[checkmate distr dplyr ggplot2 magrittr Matrix pbapply stringr tibble tidyr tidyselect]; }; + funModeling = derive2 { name="funModeling"; version="1.9.5"; sha256="0wrcfqn0sj2shs2105glhm4ll5avbh8aq0yc6q72cjixjck9hn6h"; depends=[cli dplyr entropy ggplot2 gridExtra Hmisc lazyeval moments pander RColorBrewer reshape2 ROCR scales stringr]; }; + funStatTest = derive2 { name="funStatTest"; version="1.0.3"; sha256="162wm4j63bg7l1cyqjb23cn68pm1zg1nc25zxhy3mb12pipnqq2x"; depends=[checkmate distr dplyr ggplot2 magrittr Matrix pbapply stringr tibble tidyr tidyselect]; }; func2vis = derive2 { name="func2vis"; version="1.0-3"; sha256="16lp9sz63s3g3f1j1dmx881k6wy177cmi4vl6xwg4bzg88bkf8rq"; depends=[devtools ggplot2 ggrepel igraph randomcoloR]; }; funcharts = derive2 { name="funcharts"; version="1.4.1"; sha256="0rxj7cpvl0ng1drqp5iyg7j39pn3pss2zg3zk8kf0vc6ajzfvr5g"; depends=[dplyr fda fda_usc ggplot2 MASS Matrix matrixStats mvtnorm patchwork rlang roahd robustbase rofanova rrcov RSpectra stringr tidyr]; }; funchir = derive2 { name="funchir"; version="0.2.2"; sha256="1a5nwqnnv0bn2wrw4lbnwbxkb9xr273sq8m8lnv8wy7wzfyfjaxz"; depends=[data_table]; }; @@ -10485,24 +10659,26 @@ in with self; { funr = derive2 { name="funr"; version="0.3.2"; sha256="11mjd1ba9kwawh7k5py54mkq4g1df79d7qivan8fj11qfwfzm679"; depends=[]; }; funrar = derive2 { name="funrar"; version="1.5.0"; sha256="1c9mjbl8g0w7bk7kkms14dyq7yi4c8id4ln29khfabim61dapmqd"; depends=[cluster Matrix]; }; funreg = derive2 { name="funreg"; version="1.2.2"; sha256="0dagzz5pl16l2jkkj11z41y68s75jxmyl46csda6vzlgjc7n4ji8"; depends=[MASS mgcv mvtnorm]; }; - funspace = derive2 { name="funspace"; version="0.2.1"; sha256="07xamf26vrzmqxkg0yxwh4rh8v01wya774rz70qlydfwdqq7gs3s"; depends=[ade4 ape ks MASS mgcv missForest paran phytools vegan viridis]; }; + funspace = derive2 { name="funspace"; version="0.2.2"; sha256="036hx837rlarvms79jjg3lg77h6k94p3n8n1hpw70v8hcrz6dr54"; depends=[ade4 ape ks MASS mgcv missForest paran phytools vegan viridis]; }; funspotr = derive2 { name="funspotr"; version="0.0.4"; sha256="0n437kkv1dnpna32rbyr0r5kl6qhmbygf2kmng7w5ni8p1xjwmh2"; depends=[callr dplyr formatR fs glue here httr knitr lifecycle purrr r_import readr stringr tibble tidyr]; }; funtimes = derive2 { name="funtimes"; version="9.1"; sha256="0gz26djl534d42wxspg9hl0ndhzzhkr9d4vp87afqqg9401qcgcz"; depends=[dbscan Kendall lmtest mlVAR Rdpack sandwich vars]; }; furniture = derive2 { name="furniture"; version="1.9.14"; sha256="07ds1vk1bvv6027g2z93161g3pkdp9vj3prbkjbwkj392sc9rg04"; depends=[dplyr knitr]; }; furrr = derive2 { name="furrr"; version="0.3.1"; sha256="12z4q0fn7asxis17hisi82bvfabl5if1338lmfqmkrwv5rg7748d"; depends=[future globals lifecycle purrr rlang vctrs]; }; fusedMGM = derive2 { name="fusedMGM"; version="0.1.0.1"; sha256="126h8jvmx1y1n49p4s2h3qn7qfzf6q98k7b7rwjn6rn9hjvwd45j"; depends=[bigmemory fastDummies gplots]; }; - fusen = derive2 { name="fusen"; version="0.5.2"; sha256="05i89hf2ac32cprgvlwazxj441jihx0lfghs59s2wgbjjw55wixr"; depends=[attachment cli desc devtools glue here magrittr parsermd roxygen2 stringi tibble tidyr usethis yaml]; }; + fusen = derive2 { name="fusen"; version="0.6.0"; sha256="0d7ljc7b26www60ln1ww4gn2haymlybjbd3rz8k7z8i9ckq10kkp"; depends=[attachment cli desc devtools glue here lightparser magrittr roxygen2 stringi tibble tidyr usethis yaml]; }; fuser = derive2 { name="fuser"; version="1.0.1"; sha256="17lsfpd9hdichj3wflac896zyjbq7a8w2gmlgj8nbgg80f646fgr"; depends=[glmnet irlba Matrix Rcpp RcppEigen RSpectra]; }; fusionchartsR = derive2 { name="fusionchartsR"; version="0.0.3"; sha256="09l5kckgkp2l0zvfnqhbzy65bi23aavas9m74nddhjh6di8xndh8"; depends=[htmlwidgets jsonlite magrittr shiny]; }; fusionclust = derive2 { name="fusionclust"; version="1.0.0"; sha256="1h03nlk4gnz4j5h2h5bxazkka2qq983h7nglm1ghzqvbqjk6sv37"; depends=[bbmle]; }; futile_logger = derive2 { name="futile.logger"; version="1.4.3"; sha256="1r3nayk0z9n1svbf8640vw90dal5q07nkn0gv4bnva3pbzb352sy"; depends=[futile_options lambda_r]; }; futile_options = derive2 { name="futile.options"; version="1.0.1"; sha256="0w15agpi88y3qkv6fl72zy2pzyplzgvnj41a4ixhg64mw1sck73s"; depends=[]; }; futility = derive2 { name="futility"; version="0.4"; sha256="0zjb87brz7pkx3nq3q30y69cmcxpqqsra447p60qh7005kgr9vx4"; depends=[]; }; - future = derive2 { name="future"; version="1.33.1"; sha256="1xvb7rhwnsi7l735jfrh7ij0l6q6hazwcb2620hvfjwl2kkpk00r"; depends=[digest globals listenv parallelly]; }; - future_apply = derive2 { name="future.apply"; version="1.11.1"; sha256="0zf22vip8w50pywc47xjghca9wkvcsvvfaa2yfaydwwzc3ss3bh2"; depends=[future globals]; }; + future = derive2 { name="future"; version="1.33.2"; sha256="0rma4h9rjy28n7csn748v9b83m2v5hyh0hgwwckfpbnd5331m9xm"; depends=[digest globals listenv parallelly]; }; + future_apply = derive2 { name="future.apply"; version="1.11.2"; sha256="11qkv2r8ml1i95j5ra191ij5w1dvllgvr9ld5xnq43ayzaq3b9pl"; depends=[future globals]; }; future_batchtools = derive2 { name="future.batchtools"; version="0.12.1"; sha256="0cfr4y6d0x1vm0qdpj2b6i9jddd6065iwbv99nix7nls4dzylwfv"; depends=[batchtools future parallelly]; }; future_callr = derive2 { name="future.callr"; version="0.8.2"; sha256="14hq53cam65ff25l6y17zv37448ls90sa0w51f13199m1kffaaqb"; depends=[callr future]; }; + future_mirai = derive2 { name="future.mirai"; version="0.2.1"; sha256="1ihi9n9wgxq43cx7cxzzay4j8g19jxhyww1h40rr84qzqdj6nk62"; depends=[future mirai parallelly]; }; future_tests = derive2 { name="future.tests"; version="0.7.0"; sha256="10g1w99xqr7l0cn27642aphqcvfidgpas38f84r815yy6k1ryrlx"; depends=[cli crayon future prettyunits sessioninfo]; }; + futureverse = derive2 { name="futureverse"; version="0.1.0"; sha256="1c720ynsxg18xz1xr1gx6vydhvmskwwlxf9jrglrni1rfrf6h4f7"; depends=[doFuture furrr future future_apply progressr]; }; fuzzr = derive2 { name="fuzzr"; version="0.2.2"; sha256="1cwq7a5j6lzrlz9dw3hsfap988rh1kkgf03yni7c33zl69xp5w77"; depends=[assertthat progress purrr]; }; fuzzyRankTests = derive2 { name="fuzzyRankTests"; version="0.4"; sha256="04841fh4nf7qriqk0b2ny943bji60bj42j8czg056d2dza4q4039"; depends=[]; }; fuzzySim = derive2 { name="fuzzySim"; version="4.10.7"; sha256="1xfq2il2d44a99yp2lnsmmna52spqk92sv29farmxwppfvghg942"; depends=[modEvA]; }; @@ -10511,11 +10687,10 @@ in with self; { fuzzyreg = derive2 { name="fuzzyreg"; version="0.6.2"; sha256="056ryj4w26fb4fpy43fgvqs8ijcpm6v503pnzw73d8gxahwkvwl2"; depends=[limSolve quadprog]; }; fuzzywuzzyR = derive2 { name="fuzzywuzzyR"; version="1.0.5"; sha256="1g73xivxyh5fvppccgnxhgar6jsl6zsr2djkg0bhh10i633l56ia"; depends=[R6 reticulate]; }; fwb = derive2 { name="fwb"; version="0.2.0"; sha256="02r6p2ck56lm3ip105cp0m5q05lifynpq767bl2igf7zsvhjqpak"; depends=[chk pbapply rlang]; }; - fwildclusterboot = derive2 { name="fwildclusterboot"; version="0.13.0"; sha256="0slm28pgvfsrsdvz2i1h231gkf4iq6gdlspyzppn8nwhngvic5hd"; depends=[collapse dqrng dreamerr Formula generics gtools JuliaConnectoR MASS Matrix Rcpp RcppArmadillo RcppEigen rlang summclust]; }; fwlplot = derive2 { name="fwlplot"; version="0.2.0"; sha256="1fi2ijfkpxfbwxfcyc5mk2c7mpj6z7lrwm8wlilk2g04y6jmw84l"; depends=[data_table fixest ggplot2]; }; fwsim = derive2 { name="fwsim"; version="0.3.4"; sha256="0fy87c1x5hihfcppv1pvk3b0pwl6ygqpka40x55gbpkgssdigb1l"; depends=[Rcpp]; }; fxTWAPLS = derive2 { name="fxTWAPLS"; version="0.1.2"; sha256="1bxrwkf65qw3k6mqvp27lqw6i2r7bdbilnl9406k1nva353gcxxm"; depends=[doFuture foreach future geosphere ggplot2 JOPS MASS progressr]; }; - fxl = derive2 { name="fxl"; version="1.6.3"; sha256="1c1cw1j1vz7my868ryg0r7zw655xbhk0za75pvd3mgfy0bs6600x"; depends=[grImport rlang]; }; + fxl = derive2 { name="fxl"; version="1.7.1"; sha256="0i7c30vaysrfav9z4ikfmjy287qvcnx3yi3898qcszkip28n9zx7"; depends=[rlang]; }; fxregime = derive2 { name="fxregime"; version="1.0-4"; sha256="0ml1q0xp90jfng6a60pfkp6j7wajk6pz4p4wm08rfqikgsdvp0m4"; depends=[car sandwich strucchange zoo]; }; fy = derive2 { name="fy"; version="0.4.2"; sha256="1gbv2hvh3y9qdld660i250snwxn4irp41qrr3pc1nakbf5b9aqnz"; depends=[data_table fastmatch hutils]; }; g_data = derive2 { name="g.data"; version="2.4.1"; sha256="1v2sn117hmawgsa6f7nrpv2bpg6zzjd1ss356qjqp7kdwmifqlrq"; depends=[]; }; @@ -10526,16 +10701,16 @@ in with self; { gJLS2 = derive2 { name="gJLS2"; version="0.2.0"; sha256="112fyy76ry6g0xinhy09s5vdcd11jw7sivadlx05ali89lm5nigg"; depends=[ggplot2 MASS MCMCpack moments nlme plyr quantreg]; }; gKRLS = derive2 { name="gKRLS"; version="1.0.2"; sha256="0kkk463mgrypc5vihv9hvj7dsdwv6yvmhxp6iy6ip1k7nqi8xdvf"; depends=[Matrix mgcv mlr3 R6 Rcpp RcppEigen sandwich]; }; gLRTH = derive2 { name="gLRTH"; version="0.2.0"; sha256="1drmmr576n3pbr0q1cnnx4k7r4iz061n2cizv1kpr3wcc1g291pn"; depends=[]; }; - gMCP = derive2 { name="gMCP"; version="0.8-16"; sha256="0jkq538xif87asrllmdbcf9hz9z4p5j1xnvf3fp2kc9p48jqdx75"; depends=[CommonJavaJars JavaGD MASS Matrix multcomp mvtnorm PolynomF rJava xlsxjars]; }; + gMCP = derive2 { name="gMCP"; version="0.8-17"; sha256="0w5qxjyn5z7mygsvrmqk5ab827abhp7v4d8ha8279gjjkfswq5fi"; depends=[CommonJavaJars JavaGD MASS Matrix multcomp mvtnorm PolynomF rJava xlsxjars]; }; gMCPLite = derive2 { name="gMCPLite"; version="0.1.5"; sha256="1qykizcq42hj6v9fb9hyi59zi1m4hpk10il7why9s9cwyii1m69z"; depends=[ggplot2 MASS mvtnorm]; }; gMOIP = derive2 { name="gMOIP"; version="1.5.2"; sha256="159rqd65g17m2mh93jpkapk4r6n8gmf43vrxhv8aqyggwl0ifdkx"; depends=[dplyr eaf geometry ggplot2 ggrepel MASS Matrix plyr png purrr Rfast rgl rlang sp tibble tidyr tidyselect]; }; gMWT = derive2 { name="gMWT"; version="1.4"; sha256="1iv7dav6l9gx6vhghcyasdizjsz2f8yzcgkj2i50kpgw74ljg5ia"; depends=[clinfun Rcpp RcppArmadillo]; }; gProfileR = derive2 { name="gProfileR"; version="0.7.0"; sha256="1h1v0kgpsn04ald2izznh7fr2riwisj5hcgz4k7h3qc931rf0r4k"; depends=[plyr RCurl]; }; gRain = derive2 { name="gRain"; version="1.4.1"; sha256="11b40ngfzqqx9pgfbgx7qr63ikccxh1hg9snw55anw32hym2dyfr"; depends=[broom gRbase igraph magrittr Rcpp RcppArmadillo RcppEigen]; }; gRaven = derive2 { name="gRaven"; version="1.1.8"; sha256="0nmnmn5ni4ml5r7ah7kl8n51r5bcd9r6ncg7yz4qypbdqdamqx87"; depends=[gRain gRbase rlang]; }; - gRbase = derive2 { name="gRbase"; version="2.0.1"; sha256="1ac1qx219g2p3wlxh57jqhifckxm8jqb3vi3pmlv8m29hm997r0y"; depends=[igraph magrittr Matrix Rcpp RcppArmadillo RcppEigen]; }; - gRc = derive2 { name="gRc"; version="0.4.6"; sha256="0jrskkp8850b3nanlz19iycwnsiyfxpwxi8vy6bvv36lbhslg86l"; depends=[gRbase magrittr MASS Rcpp RcppArmadillo]; }; - gRim = derive2 { name="gRim"; version="0.3.0"; sha256="1iimjfqy2sdxxy2lvsaywxap8zik2qikjy2ib06mqjxrv711fx2a"; depends=[gRain gRbase igraph magrittr Rcpp RcppArmadillo RcppEigen]; }; + gRbase = derive2 { name="gRbase"; version="2.0.2"; sha256="15rfl3wib8gq90fy1rr1p7cvdbiqg3qkp6vc71k02difp14hwwin"; depends=[igraph Matrix Rcpp RcppArmadillo RcppEigen]; }; + gRc = derive2 { name="gRc"; version="0.5.0"; sha256="12fz7aiddzc3pxvglin265z30ihcmy18nsw02zg7vb27bz5ldvqp"; depends=[gRbase igraph MASS Rcpp RcppArmadillo]; }; + gRim = derive2 { name="gRim"; version="0.3.2"; sha256="1injdhl0xgx9702k4jxdy0wpkf2d4k31m9fi5g9sf572i288lrns"; depends=[doBy glue gRain gRbase igraph MASS Matrix Rcpp RcppArmadillo RcppEigen]; }; gSeg = derive2 { name="gSeg"; version="1.0"; sha256="0lixlirisnxk29zlrragi3l8j1abb5cl7zh6vhx7l5hjdvh8ldq9"; depends=[]; }; gStream = derive2 { name="gStream"; version="0.2.0"; sha256="1f4xnbavm99yhjmaahazigps41mqlfvvl29kf4fs1yjqr531y36b"; depends=[]; }; gTests = derive2 { name="gTests"; version="0.2"; sha256="1h1sd8mrzcniq7rx7frdlxwpnsn8lifng1x99fqq703hs3znl1yq"; depends=[ade4]; }; @@ -10549,8 +10724,8 @@ in with self; { gaiah = derive2 { name="gaiah"; version="0.0.5"; sha256="1s2chr3zjgvmmic178c1fixbvf501q7jvxdg8204jalh9iii14vb"; depends=[dplyr geosphere magrittr raster rlang sp]; }; gainML = derive2 { name="gainML"; version="0.1.0"; sha256="1mqhrdjdmc2n7dxilxkqn6xq7z0qnxpigw5bbffnjvvsmdamah0n"; depends=[fields FNN]; }; gains = derive2 { name="gains"; version="1.2"; sha256="1nmrhc7qjlyzn04r1qyjdws5fin3idmi789kbxzilax12ya8xr7k"; depends=[]; }; - galah = derive2 { name="galah"; version="2.0.1"; sha256="0q37f8qpqrhbxaq1gjqvrhqz9ak41mlijria49p9fhmsz8fv0zz4"; depends=[cli crayon dplyr glue httr2 jsonlite lifecycle potions purrr readr rlang sf stringr tibble tidyr tidyselect]; }; - galamm = derive2 { name="galamm"; version="0.1.1"; sha256="0iyszijnlg9bsh8234qm1vdrvcbnas18ylks9v4jg32mxnai6vpq"; depends=[lme4 Matrix memoise mgcv nlme Rcpp RcppEigen Rdpack]; }; + galah = derive2 { name="galah"; version="2.0.2"; sha256="1z4z403b3jf0rj3gjrmsgjc4niab6jxdwb01rw0pzdblc8a2y4f1"; depends=[cli crayon dplyr glue httr2 jsonlite lifecycle potions purrr readr rlang sf stringr tibble tidyr tidyselect]; }; + galamm = derive2 { name="galamm"; version="0.2.0"; sha256="1pyckh5yb9asgk47za9a1791hzkr0w978bf5b7qjca2gw1yymarw"; depends=[lme4 Matrix memoise mgcv nlme Rcpp RcppEigen Rdpack]; }; galigor = derive2 { name="galigor"; version="0.2.5"; sha256="1lfw1kikf90nv9g0xrb656fbilmxdk64zrzi43wrz7y2y55sd5xv"; depends=[cli crayon dplyr gargle getProxy magrittr purrr rappsflyer rfacebookstat rgoogleads rmytarget rstudioapi rvkstat ryandexdirect rym tibble tidyr]; }; galts = derive2 { name="galts"; version="1.3.2"; sha256="0a7yhdxja4jq2rn6p8imfg7ih3i4njqsz8zmkgwckj4q2x042lj5"; depends=[DEoptim genalg]; }; galvanizer = derive2 { name="galvanizer"; version="0.5.3"; sha256="1b9431mmgpqyd49b8nlsrlxjq9j9fyj73226bi9jic1p867533kk"; depends=[dplyr httr jsonlite lubridate magrittr rlang tibble tidyjson tidyr tidyselect]; }; @@ -10564,17 +10739,18 @@ in with self; { gamboostLSS = derive2 { name="gamboostLSS"; version="2.0-7"; sha256="1mx2aixdswmb8dgg1iawqzak2w7a1w4x6igk8wdwi05gifrgrs3i"; depends=[mboost stabs]; }; gamboostMSM = derive2 { name="gamboostMSM"; version="1.1.88"; sha256="16khm2fpsb3ivfszrilxbrzc8a281vmd1q36dcn50xbkvn19syxg"; depends=[mboost]; }; gamclass = derive2 { name="gamclass"; version="0.62.5"; sha256="0y34970qwgssdnwnhb1hnkyav8j7pq3hkdskw63qs8cin4cknq7j"; depends=[lattice latticeExtra randomForest rpart]; }; - gameR = derive2 { name="gameR"; version="0.0.5"; sha256="0k4gsnlb4jc9nbvxjjqyllvn70a707pl1icc3dhc62gqychkaxyn"; depends=[]; }; + gameR = derive2 { name="gameR"; version="0.0.6"; sha256="05bn53ryl48s2r212wqaxljimkgskyd4qxzc7algzbyvmalcg6rx"; depends=[]; }; gamesGA = derive2 { name="gamesGA"; version="1.1.3.7"; sha256="0km0z2haqgykl01xkzsbkpwibavgqfjygx7cg08ni68gw501689l"; depends=[shiny]; }; gamlr = derive2 { name="gamlr"; version="1.13-8"; sha256="1psvxx7ymkgr4acis85842xgafc5azdl7v1cmgvgbhsdwksm95q7"; depends=[Matrix]; }; gamlss = derive2 { name="gamlss"; version="5.4-22"; sha256="0bgya6jb462ggqnmlpwdymxqvqbkah15i3aai1xi9496z66r1rh1"; depends=[gamlss_data gamlss_dist MASS nlme survival]; }; - gamlss_add = derive2 { name="gamlss.add"; version="5.1-12"; sha256="1xprccwlnv0rjhgmgz7v0n95gsxzi8cig15drkcpira3nb0m83xc"; depends=[gamlss gamlss_dist mgcv nnet rpart]; }; + gamlss_add = derive2 { name="gamlss.add"; version="5.1-13"; sha256="1dhiq3x0dascjsq3c80j6zgx4xdcjljd4ishzpp8j9m5bk55z72z"; depends=[gamlss gamlss_dist mgcv nnet rpart]; }; gamlss_cens = derive2 { name="gamlss.cens"; version="5.0-7"; sha256="1l2g0gn794jyyjxvphfk1l8h4qwf6sk1akcf0c08xqx3kgillnjl"; depends=[gamlss gamlss_dist survival]; }; gamlss_countKinf = derive2 { name="gamlss.countKinf"; version="3.5.1"; sha256="1xalp909gxxhyhh4chlr1ssyfhydhw1w3szzbynajji98576zaqv"; depends=[gamlss gamlss_dist]; }; gamlss_data = derive2 { name="gamlss.data"; version="6.0-6"; sha256="08mb154mz1kk19zb414i5mg1q1yv7nylwpc5kzsb602mv4cxpq5s"; depends=[]; }; gamlss_demo = derive2 { name="gamlss.demo"; version="4.3-3"; sha256="01p6abppwbnh2a2ks1g08z4iwq2fxf125y9s4qzssybsn76a3gf3"; depends=[gamlss_dist gamlss_tr rpanel]; }; gamlss_dist = derive2 { name="gamlss.dist"; version="6.1-1"; sha256="0sch2bh1mchl7kfdy4wcmwzzgx7cldswn65a2br2x73rb1v3mnyj"; depends=[MASS]; }; gamlss_foreach = derive2 { name="gamlss.foreach"; version="1.1-6"; sha256="1bld98lfbgj1v6l4vq3yysg1lnvpgj2r9vykkfy0q1yipv2xbnqb"; depends=[doParallel foreach gamlss gamlss_data gamlss_dist glmnet]; }; + gamlss_ggplots = derive2 { name="gamlss.ggplots"; version="2.1-12"; sha256="0lm0nlc2rb4yl6fliv0017qpgyaaky7hws6arv36dgqqih9dmcii"; depends=[ellipse foreach gamlss gamlss_dist gamlss_foreach gamlss_inf ggplot2 ggridges mgcv yaImpute]; }; gamlss_inf = derive2 { name="gamlss.inf"; version="1.0-1"; sha256="0m091zxjm5wvhm6mzbpzkr275n3qnlb3v4099k0a1jymahk4w7vr"; depends=[gamlss gamlss_dist]; }; gamlss_lasso = derive2 { name="gamlss.lasso"; version="1.0-1"; sha256="03c8k6hl23ag98dihznfz1h0qc3pwxbnpv58pvmx3xbb3lipfjfb"; depends=[gamlss glmnet lars Matrix]; }; gamlss_mx = derive2 { name="gamlss.mx"; version="6.0-1"; sha256="0r19705wxc9wj4ji2plws9q7xn2nm53sb3x4z9c0ycymv9fkblb6"; depends=[gamlss gamlss_dist nnet]; }; @@ -10583,11 +10759,13 @@ in with self; { gamlssbssn = derive2 { name="gamlssbssn"; version="0.1.0"; sha256="1l8d4qwmq9dklm9imb3cvlncwa6jygf8kg2j1599h1nfhyyhj2vv"; depends=[gamlss gamlss_dist MASS]; }; gamm4 = derive2 { name="gamm4"; version="0.2-6"; sha256="128c725y9s07c1m9cvd9hgi9hldrymcs5divd8pw7bdjh9jvdiap"; depends=[lme4 Matrix mgcv]; }; gammSlice = derive2 { name="gammSlice"; version="2.0-2"; sha256="1klxg1yhmfaz1zjnw1kxl1lm5plkakqh014rpkak2lj8zgf8qnyy"; depends=[KernSmooth lattice mgcv]; }; + gamma = derive2 { name="gamma"; version="1.0.5"; sha256="1n4jd0xvn6ld5adhhanqxhl7nndj4cqf17jp18s6jmrx7jbc3k5f"; depends=[ggplot2 IsoplotR rlang rxylib]; }; gamreg = derive2 { name="gamreg"; version="0.3"; sha256="1svrgbb8qdy2hzpq1g38v2lzmlbrn7qljix827biqzwgiajy69gg"; depends=[doParallel foreach glmnet Rcpp RcppArmadillo robustHD]; }; gamsel = derive2 { name="gamsel"; version="1.8-2"; sha256="1w1z2g0njsfv1ah6w3zw4lcgnaxask5mgykb204jzp6hpnc1a6cb"; depends=[foreach mda]; }; gamselBayes = derive2 { name="gamselBayes"; version="2.0-1"; sha256="1947lpxhiyf2kf22miliikx8plzhb1l97w440fb626vvgwfa340j"; depends=[Rcpp RcppArmadillo]; }; + gamstransfer = derive2 { name="gamstransfer"; version="3.0.3"; sha256="0ashdicnkrvbsddqajhnqrwrpw8y3ikzibm4y3gn5ywg7y3dbp2k"; depends=[collections R_utils R6 Rcpp]; }; ganDataModel = derive2 { name="ganDataModel"; version="1.1.6"; sha256="1fff76zh6bn94y57qnxbya3xrshp99pxk5ks2p9i7i4p1f8xvhvd"; depends=[Rcpp tensorflow]; }; - ganGenerativeData = derive2 { name="ganGenerativeData"; version="1.5.7"; sha256="1b3gwzjsbwq7cbghv7pykgj2bd2j4m38jsxfbv8ly0qb5khisn6g"; depends=[Rcpp tensorflow]; }; + ganGenerativeData = derive2 { name="ganGenerativeData"; version="2.0.1"; sha256="0bs557cv74wcizw7j1xswx8lf3rl6vc3ybdn71854mjrab0sjz85"; depends=[httr Rcpp tensorflow]; }; gap = derive2 { name="gap"; version="1.5-3"; sha256="1kjjnh0s9aicwkd7wsisi4c75y701irigsbzp7y6f2264bcgj6bf"; depends=[dplyr gap_datasets ggplot2 plotly Rdpack]; }; gap_datasets = derive2 { name="gap.datasets"; version="0.0.6"; sha256="1jwpsb66sgj2zzgrpgwxc22df66gbhi278ywbmaicc10mipv050y"; depends=[]; }; gapclosing = derive2 { name="gapclosing"; version="1.0.2"; sha256="1nq7wbl3236rg27hpfrl1f20gg0yrjmddcghmnh0yv5nzl52l798"; depends=[doParallel dplyr forcats foreach ggplot2 glmnet magrittr mgcv ranger tidyr tidyselect]; }; @@ -10599,7 +10777,7 @@ in with self; { gargoyle = derive2 { name="gargoyle"; version="0.0.1"; sha256="0lsjplfrc047lb3zjfsc8wl47kll7d85v824k7zlr0n34xbbypq7"; depends=[attempt shiny]; }; garma = derive2 { name="garma"; version="0.9.13"; sha256="0h61f29x2261vky4cwmcfwlix7x1yg8qkhgkhiw1aryqmzvwf0lc"; depends=[BB crayon dfoptim FKF forecast GA ggplot2 hypergeo ltsa lubridate nloptr pracma pso Rsolnp signal tswge zoo]; }; garray = derive2 { name="garray"; version="1.1.2"; sha256="0s2dgi556x9jnhafvzz4qkxdbq9dm12gsvsqd2g9iy3468fx9flq"; depends=[]; }; - gasanalyzer = derive2 { name="gasanalyzer"; version="0.3.4"; sha256="04h6iyxgvjz58lj090f70hjkizkabvi9zrghgw4ynlzbcckjwvg0"; depends=[jsonify stringi tibble tidyxl units vctrs xml2]; }; + gasanalyzer = derive2 { name="gasanalyzer"; version="0.4.0"; sha256="1j46w7ikpzll40yk3vwlq1zysgsnlrf5p01hllp8a9qshxdhl5a6"; depends=[jsonify stringi tibble tidyxl units vctrs xml2]; }; gaselect = derive2 { name="gaselect"; version="1.0.22"; sha256="0hk18dl851z9dnw9vd9836lr7j3wlg3kk31k185p2yyk7l821mqp"; depends=[Rcpp RcppArmadillo]; }; gasfluxes = derive2 { name="gasfluxes"; version="0.6-2"; sha256="18yr3331wriddxbnxag3ms6lmx709mhrngv8sxfg0zcm271pkl1r"; depends=[data_table MASS sfsmisc]; }; gasmodel = derive2 { name="gasmodel"; version="0.6.0"; sha256="16wxv0fkaayxvd5h436wyp9is8y47k7ivim5f9md4g4acy3ca3cb"; depends=[abind arrangements CircStats copula dplyr ggplot2 Matrix mvnfast nloptr numDeriv pracma tidyr]; }; @@ -10608,16 +10786,16 @@ in with self; { gaston = derive2 { name="gaston"; version="1.6"; sha256="1knjyw2dsarljj2zsqp3hi6hk6m90sfqp2l535h3arj70l3rq9x4"; depends=[Rcpp RcppEigen RcppParallel]; }; gateR = derive2 { name="gateR"; version="0.1.15"; sha256="1a818bypdiingv6kmrfmx7ivxybs8k7261vfqlmb4gdl87n71rb2"; depends=[fields lifecycle rlang sparr SpatialPack spatstat_geom terra tibble]; }; gatepoints = derive2 { name="gatepoints"; version="0.1.5"; sha256="0f9n32s1ssp4nmjarls4llmi91jxh4w4qwxf7awxaalqz4lrzbg2"; depends=[]; }; - gatoRs = derive2 { name="gatoRs"; version="1.0.1"; sha256="0m3hhykyn0yhnhqsyjdvmfk04zjj7g5hp925clfda145rp6khch1"; depends=[CoordinateCleaner dplyr leaflet magrittr parsedate rgbif ridigbio spatstat_geom spThin stringr terra]; }; + gatoRs = derive2 { name="gatoRs"; version="1.0.2"; sha256="0a1z3rjgkz5wxccb5lzmwmskvjlgab3zmznwvjgk2bslda6yzqil"; depends=[CoordinateCleaner dplyr leaflet magrittr parsedate rgbif ridigbio spatstat_geom spThin stringr terra]; }; gauseR = derive2 { name="gauseR"; version="1.2"; sha256="1rvw7dbrsxqqch2dgslabc47llb64ljakc60m47gql5n9br7akbd"; depends=[deSolve]; }; gaussDiff = derive2 { name="gaussDiff"; version="1.1"; sha256="0fqjdxp2ibbami75ba16d02dz4rz5sk8mni45di9anydx44g9d45"; depends=[]; }; - gausscov = derive2 { name="gausscov"; version="1.1.2"; sha256="12v1xa21d573jinzy54crla169rnlavkwx2ijryhydmiyh2574yb"; depends=[]; }; + gausscov = derive2 { name="gausscov"; version="1.1.3"; sha256="0dv3ifhi72kij820bny5jikps8zywyinddbc78q4bdbska820rvn"; depends=[]; }; gaussfacts = derive2 { name="gaussfacts"; version="0.0.2"; sha256="095x7k7m7sy1gqkbm6wiqn26252dclz62sbnkv6cjvmbdxajl7m9"; depends=[]; }; gaussplotR = derive2 { name="gaussplotR"; version="0.2.5"; sha256="0amkgzgh6764ri30210nhbi3wcll3248fmkpclx010dxc3hllfdx"; depends=[ggplot2 metR rgl viridisLite]; }; gaussquad = derive2 { name="gaussquad"; version="1.0-3"; sha256="04689l076agncsxqcbkx76z89cvjigs8p8v58p5kad655gjpqcx3"; depends=[orthopolynom polynom]; }; gawdis = derive2 { name="gawdis"; version="0.1.5"; sha256="13f7fx5j9r5wky2zriyqlr7vjda1y9c7n3iz0ajw6fxfr1c670dx"; depends=[FD GA]; }; gb = derive2 { name="gb"; version="2.3.3"; sha256="0gkdkbwr168vi7lgccla49l43rkmjcfrwlqdr65mg5syzcxrh7nh"; depends=[boot KernSmooth]; }; - gbRd = derive2 { name="gbRd"; version="0.4-11"; sha256="06x97rw5i6v6cgjxkfhxnw4dn7lghn5q6ra7ri5ag1x9dkfzcl82"; depends=[]; }; + gbRd = derive2 { name="gbRd"; version="0.4.12"; sha256="0f13hg6nckl4aflwd49g4x2adxjfgah2yga70z1m8jszhhm1vka8"; depends=[]; }; gbeta = derive2 { name="gbeta"; version="0.1.0"; sha256="0611rynyybmiq6pj5jvwijdgx3hnr6mscv20lrqzlfplbmvmz0bj"; depends=[gsl Rcpp RcppEigen RcppNumerical Runuran]; }; gbfs = derive2 { name="gbfs"; version="1.3.9"; sha256="0748gicg4mf3csgf75rcpkcsf0c8md4clyavh3kxs77jhq8h6j48"; depends=[curl dplyr httr jsonlite lubridate purrr readr stringr]; }; gbifdb = derive2 { name="gbifdb"; version="1.0.0"; sha256="0lcwi7bx2giwcgr0dw6y1isj9bszs9d5yv4lby6gn0z4cmv6qzcb"; depends=[arrow dplyr duckdbfs]; }; @@ -10642,13 +10820,12 @@ in with self; { gcookbook = derive2 { name="gcookbook"; version="2.0"; sha256="11g1q187l4j31b6cdzdx5z3s14z3s09l7ynl36pzzn9j19l8cmrc"; depends=[]; }; gcplyr = derive2 { name="gcplyr"; version="1.9.0"; sha256="0j584jh0kqwazgfk12gfbvivqhfgi3gb9hbw55fgv36an4x7q22h"; depends=[dplyr rlang tidyr]; }; gcxgclab = derive2 { name="gcxgclab"; version="1.0.1"; sha256="0w6l9d23wbcvj5qzxc1yz20ic58hjkswk7scyjldiv6cbzm89wr1"; depends=[dplyr ggplot2 ncdf4 nilde nls_multstart ptw Rdpack zoo]; }; - gdalBindings = derive2 { name="gdalBindings"; version="0.1.17"; sha256="1z4n9113by1igd9kpmvjll7rp3hf2ijgrrvc1p8l43595546fcp2"; depends=[data_table R6 Rcpp]; }; gdalUtilities = derive2 { name="gdalUtilities"; version="1.2.5"; sha256="19vi6mr5jwlb00r33hkz7d0n9dar95hwdvbqbhh2dmha128fjwia"; depends=[sf]; }; gdalcubes = derive2 { name="gdalcubes"; version="0.7.0"; sha256="1bpskiv7pc09pwmh3ghf5l6wswbwlbmwx6sjqlqx7vs8d7gk6972"; depends=[BH jsonlite ncdf4 Rcpp]; }; - gdalraster = derive2 { name="gdalraster"; version="1.9.0"; sha256="1bii8gr1b5fjfi2bwspxvn0d6bl7k3l3x2426l16p9pw8r7sk3wn"; depends=[Rcpp xml2]; }; + gdalraster = derive2 { name="gdalraster"; version="1.11.1"; sha256="0vf28id5yq4f491b25fbmap1yzpzxxkkqmzfln1qc4hxfhbirv1p"; depends=[bit64 Rcpp RcppInt64 xml2]; }; gdata = derive2 { name="gdata"; version="3.0.0"; sha256="0zxi0634dkgczw7gicj8r6mhb83cpkxhsy2iivz0b9v52y9bjmm4"; depends=[gtools]; }; gde = derive2 { name="gde"; version="0.2.1"; sha256="05paf15dn2l7mfzhy3p3k7a2831fj9fwvwgljhcv7wpdj7djdccs"; depends=[data_table dplyr DT ggplot2 httr jsonlite leaflet progress R_utils readr RSQLite shiny shinycssloaders shinyWidgets stringr XML]; }; - gdi = derive2 { name="gdi"; version="1.5.4"; sha256="1lsflav0wday5f6fclwwvnzj0b59hh4raw216karqshcs80c8ldf"; depends=[jpeg png]; }; + gdi = derive2 { name="gdi"; version="1.6.0"; sha256="0arqx98k9dkxr8fhp0x2zxmx97kk666ffhbaqh9mrzrmwkapa3vb"; depends=[jpeg png]; }; gdiff = derive2 { name="gdiff"; version="0.2-5"; sha256="1j3xmvpqs5vb9iq460dishi8bsb0kwfz6742bpvnhpk8z3mhf9af"; depends=[magick pdftools]; }; gdim = derive2 { name="gdim"; version="0.1.0"; sha256="02q5ynd22yisl3as9hyrg18p9j74lw6p1z3szm1k2ax0r3k04r27"; depends=[dplyr ggplot2 irlba magrittr Matrix progress rlang tibble]; }; gdistance = derive2 { name="gdistance"; version="1.6.4"; sha256="0awrv10adi31inrgxbb83p73fq05i2xifj2xf16z6mp2lwzgvxba"; depends=[igraph Matrix raster sp terra]; }; @@ -10661,13 +10838,13 @@ in with self; { gear = derive2 { name="gear"; version="0.3.4"; sha256="0ibn2kr0rjj546cbcqhr6x69s25xh7si5fri59055j42g62mdnxy"; depends=[autoimage optimx Rcpp]; }; geboes_score = derive2 { name="geboes.score"; version="1.0.0"; sha256="1i7ivcbrk1kyvh98xjs2v4zph85qrfsila50wx4vjxclaqp7afzl"; depends=[checkmate]; }; gecko = derive2 { name="gecko"; version="1.0.0"; sha256="1q0wzg3mkb6z7zs81zynj6x159w99h5an20a6m8wdqbday5sccyc"; depends=[biomod2 geosphere kernlab red sp terra]; }; - gee = derive2 { name="gee"; version="4.13-26"; sha256="1323qv2hiinixmwcb8rfvf5qmkffnnq9f1g8kj9amwsimfsm71cs"; depends=[]; }; + gee = derive2 { name="gee"; version="4.13-27"; sha256="1754173msjxhkpl95v6z8c73vhz7ivfil0xfs25smrlgslzpgd1z"; depends=[]; }; geeCRT = derive2 { name="geeCRT"; version="1.1.3"; sha256="08gcifq3gv8b6j7mdgf2y2s9gdcza96681wkzmq7skcj9430m7dm"; depends=[MASS mvtnorm rootSolve]; }; geeM = derive2 { name="geeM"; version="0.10.1"; sha256="1r9zyjv7r7r7avdqi54dvczf971frz8pgrs1a04kan5mh4ls6xpy"; depends=[Matrix]; }; geeVerse = derive2 { name="geeVerse"; version="0.1.0"; sha256="14yy7qfjql2p6hhm2h5v2j29528085chp84s7q5i9x5x84zpmqvi"; depends=[doParallel foreach mvtnorm quantreg Rcpp RcppEigen]; }; - geeasy = derive2 { name="geeasy"; version="0.1.1"; sha256="1b874hacl0hhd16yfaag3kpqrc0336mmkzja0pa3gf7zj8d6n777"; depends=[geeM geepack ggplot2 lme4 Matrix MESS]; }; + geeasy = derive2 { name="geeasy"; version="0.1.2"; sha256="0hfxryqn5dxpyl0s16ibbg1n8w19wl5ldxa8g437akb760pmsmvl"; depends=[geeM geepack ggplot2 lme4 Matrix MESS]; }; geecure = derive2 { name="geecure"; version="1.0-6"; sha256="0nmnrkfgblv38qvk66bdk8933icr59mayqwljkvmpy59sm6br2k5"; depends=[geepack MASS Matrix survival]; }; - geepack = derive2 { name="geepack"; version="1.3.10"; sha256="0hjz45ixpxv9x503mrr3jai9a0gi7sv28lh7i1j5xzcp6qxr4f2a"; depends=[broom magrittr MASS]; }; + geepack = derive2 { name="geepack"; version="1.3.11"; sha256="0y74allpn9bcc5hlqlr97qb9siig52qvaf1lyd4ffpg72k9z1qi9"; depends=[broom magrittr MASS]; }; geesmv = derive2 { name="geesmv"; version="1.3"; sha256="0gm953z8q5cc1adl3d6vj5djg2inc880zfcdl5gd56fnb5gl6h1w"; depends=[gee MASS matrixcalc nlme]; }; geessbin = derive2 { name="geessbin"; version="0.1.2"; sha256="06phzv4mwa4lk93xq5824s6zxz81xi0cmwh10d53h9iakynisnw1"; depends=[MASS]; }; geex = derive2 { name="geex"; version="1.1.1"; sha256="0hs17vmwgpvv85za32rmnlylp0fbbirb1irxxqkgx3dsffgvpbm1"; depends=[lme4 Matrix numDeriv rootSolve]; }; @@ -10675,7 +10852,6 @@ in with self; { geiger = derive2 { name="geiger"; version="2.0.11"; sha256="0s9zvqgn30spwggwpr02gzdjg3h4kgqamq37i03i14a3i2ls1ifw"; depends=[ape coda colorspace deSolve digest MASS mvtnorm ncbit phytools Rcpp subplex]; }; gellipsoid = derive2 { name="gellipsoid"; version="0.7.3"; sha256="16dh4gs44vnc9v1hj9xjmsq88ygk9vyfp0asqgql1ar61wgmlsav"; depends=[rgl]; }; gelnet = derive2 { name="gelnet"; version="1.2.1"; sha256="10ygdfz9f5xhahlqb2divwvaljhiz8jhsd12wvq0qalx0v1h5j0p"; depends=[]; }; - gemlog = derive2 { name="gemlog"; version="0.41"; sha256="16pdhpx21avxjrawj7i47dxzz2wfhabzz5x3nln2pwaz5b147syz"; depends=[signal]; }; gemma2 = derive2 { name="gemma2"; version="0.1.3"; sha256="1l5axji33abrkm2b32ziilhfqssbq4ypv7kimd16fak6xjz50m0k"; depends=[Matrix]; }; gems = derive2 { name="gems"; version="1.1.1"; sha256="174mjnpldb0rwjvwdgpcg1acm526gs0pjf9gi5mn9d3x9yz4r5jx"; depends=[data_table MASS msm plyr]; }; gemtc = derive2 { name="gemtc"; version="1.0-2"; sha256="01sas647d3s5adkqg96z0hhr9pig275fz896ghnp313p5k3fz90l"; depends=[coda forcats igraph meta plyr Rglpk rjags truncnorm]; }; @@ -10684,6 +10860,7 @@ in with self; { gen5helper = derive2 { name="gen5helper"; version="1.0.1"; sha256="0z7hisn57md18vcfb6f44hy6zzp9dirrjyxi4x1id3mqa3mligb6"; depends=[dplyr ggplot2 minpack_lm naturalsort plyr pracma rlang tidyr]; }; genBaRcode = derive2 { name="genBaRcode"; version="1.2.7"; sha256="1rgx0b3bpqfc75y5x4i714m8xbrgckvg4m9gkqxq0464386s53dd"; depends=[ape Biostrings dplyr futile_logger future future_apply ggnetwork ggplot2 ggraph ggtree igraph network phangorn RColorBrewer reshape2 S4Vectors shiny ShortRead stringdist VennDiagram visNetwork]; }; genCountR = derive2 { name="genCountR"; version="1.0.0"; sha256="0s5hbvg71vsg02c3z8g2vim431jrc2jfksh28si2ycqi6bz2aj0y"; depends=[]; }; + genMCMCDiag = derive2 { name="genMCMCDiag"; version="0.2.1"; sha256="03vxmsf3vh125a87pchdpnkp5n3sqg44nkrlf8l91jicxa6p6rrx"; depends=[coda ggplot2 knitr lifecycle mcmcse]; }; genSEIR = derive2 { name="genSEIR"; version="0.1.1"; sha256="02lprxxpf7ll23habq05b6slgbh978k09sqr6myr2jhlax2snxvk"; depends=[ggplot2 minpack_lm nlsr pracma]; }; genSurv = derive2 { name="genSurv"; version="1.0.4"; sha256="07f6prqpc1mafzb8dyp8xgycrrd548rj9cpn3qz64lh1qjymns3m"; depends=[]; }; genTS = derive2 { name="genTS"; version="0.1.4"; sha256="172xpx8g6048z5hgy9h6j3k6j975hw1q7pmcn5k2s5iaj9x5kjzv"; depends=[shiny]; }; @@ -10699,7 +10876,7 @@ in with self; { geneHapR = derive2 { name="geneHapR"; version="1.2.4"; sha256="1yairrndrggvkiwwamqv3qwjs8sci4jc6k53rqs766n752vsbisz"; depends=[ape Biostrings genetics GenomicRanges ggplot2 ggpubr IRanges lolliplot maps pegas reshape2 rlang rtracklayer sf shiny shinyjs stringdist stringr tibble tidyr vcfR]; }; geneHummus = derive2 { name="geneHummus"; version="1.0.11"; sha256="1m6yyjsvmn3w87cw4da8js5vi74k5y739gxdx1yscx1n50bc3m34"; depends=[curl dplyr httr rentrez stringr]; }; geneSLOPE = derive2 { name="geneSLOPE"; version="0.38.2"; sha256="08fbrssj03ak6xqm9fmb9v6ir7229qds891088wznvg58k81yslv"; depends=[bigmemory ggplot2 SLOPE]; }; - genekitr = derive2 { name="genekitr"; version="1.2.5"; sha256="0czmmi9xnmdqd5g9ivys1srmww0x93v2dc1f245kfk26s9xi7177"; depends=[clusterProfiler dplyr europepmc fst geneset ggplot2 ggraph ggvenn igraph magrittr openxlsx rlang stringi stringr tidyr]; }; + genekitr = derive2 { name="genekitr"; version="1.2.7"; sha256="0qymmprifw429542ns0dns801m3kvsskgddz2zvb8ny36sdrvrqm"; depends=[clusterProfiler dplyr europepmc fst geneset ggplot2 ggraph ggvenn igraph magrittr openxlsx rlang stringi stringr tidyr]; }; genemodel = derive2 { name="genemodel"; version="1.1.0"; sha256="1x6n6k9ifv2swhyrghvm6fsz5vh85cdik8225175i9msvmkh928n"; depends=[stringr]; }; genepi = derive2 { name="genepi"; version="1.0.3"; sha256="0ff5cv8sxda55xjj1pdnaljsg840vmvaz51mgajczv9c0wgj70yj"; depends=[]; }; genepop = derive2 { name="genepop"; version="1.2.2"; sha256="13h3azszr42bzm5af8rkxw1lnd1x5c9lpawfcg3m5xgwvwzlzl3l"; depends=[Rcpp RcppProgress stringr]; }; @@ -10710,11 +10887,11 @@ in with self; { genero = derive2 { name="genero"; version="0.1.0"; sha256="0akwwy5xbh7s40v8dr1zr7jfglv0iyh4zn0sb0rnz4r57qr6nh8w"; depends=[]; }; geneset = derive2 { name="geneset"; version="0.2.7"; sha256="1fiyrlsy5zqmxdj71w5m0h70ln5b84y7mlhv2j8lad623gpng3l6"; depends=[dplyr fst RCurl stringi stringr]; }; genesysr = derive2 { name="genesysr"; version="2.1.1"; sha256="0gf63gmhxvyxms2xhbgwmg8c5xpc4bswbpvfv4nyx25zr97ba7vi"; depends=[dplyr httr2 jsonlite magrittr readr tidyselect]; }; - genetic_algo_optimizeR = derive2 { name="genetic.algo.optimizeR"; version="0.2.6"; sha256="08jc17nwvycfgkzqisgyj741ykwsm0q8kh3f464zzwp5s6612ajy"; depends=[biocViews dplyr ggplot2 magrittr rsconnect stringr tinytex]; }; geneticae = derive2 { name="geneticae"; version="0.4.0"; sha256="0ka0m4dq8a9bzdk3gi7gj6dnc2a7c4chrzixw2g4qd7md31z33vx"; depends=[calibrate dplyr GGEBiplots ggforce ggplot2 MASS matrixStats missMDA pcaMethods prettydoc reshape2 rlang rrcov scales tidyr]; }; genetics = derive2 { name="genetics"; version="1.3.8.1.3"; sha256="0lljxvz7nc6y2z303icphar2niir0i407w5cyhy2pwspd9gwkwpy"; depends=[combinat gdata gtools MASS mvtnorm]; }; + genfrn = derive2 { name="genfrn"; version="0.1.4"; sha256="1y2ggdsbv7dbmi7y32nnhg76s6raj29j7riqlwbq49zg414p926a"; depends=[]; }; genie = derive2 { name="genie"; version="1.0.5"; sha256="07w6rf4a3d34j7dwz9zcxshg2sk1cd5v59xs3jxph17c9gga0nlq"; depends=[genieclust Rcpp]; }; - genieBPC = derive2 { name="genieBPC"; version="1.1.0"; sha256="0wc9avjwy4i6zikhqi3mcyws8a6kbgk6qzrrmrm2hlxf5gzlfr47"; depends=[cli dplyr dtplyr httr jsonlite purrr rlang stringr sunburstR tibble tidyr]; }; + genieBPC = derive2 { name="genieBPC"; version="1.1.1"; sha256="1s8qi5i10a3qkpgls2589m6aiyda2k7gbfjmbpkbjw73girkh5ln"; depends=[cli dplyr dtplyr httr jsonlite purrr rlang stringr sunburstR tibble tidyr]; }; genieclust = derive2 { name="genieclust"; version="1.1.5-2"; sha256="0n8r3wvync041ppf72gd3yx1yj9b4fdbcb4gw3lhvsxx1gxwym0k"; depends=[Rcpp]; }; genio = derive2 { name="genio"; version="1.1.2"; sha256="0izx8yv8mvnfxdqnqpnp2ldw1hzs6ggxi7jgmjlgxkgmm4vngbgl"; depends=[dplyr Rcpp readr tibble]; }; geniusr = derive2 { name="geniusr"; version="1.2.1"; sha256="14flyjrnw3l4j02dnr8495r5xdsr83firz0irpqbxw0jrajbj5dq"; depends=[curl dplyr httr purrr rvest stringr tibble xml2]; }; @@ -10742,23 +10919,22 @@ in with self; { geoR = derive2 { name="geoR"; version="1.9-4"; sha256="1ggbswsw01r3cfx88khprx6rhrq40rnqsbsljcjkpyg0xdy9g7df"; depends=[MASS sp splancs]; }; geoSAE = derive2 { name="geoSAE"; version="0.1.0"; sha256="16fkai95cqwxkylpk1gddyzja80036ghfb4ps3rz1vbbqzhg01x8"; depends=[MASS nlme]; }; geoTS = derive2 { name="geoTS"; version="0.1.8"; sha256="0hjhc68pl1gq9wcgvvagn903vlhwsayf7kka88rdcb6y7rgdlp5v"; depends=[doParallel ff foreach raster robustbase sp]; }; - geobr = derive2 { name="geobr"; version="1.8.2"; sha256="160mvxx4pcxiyzrwz24lqfvybb63rykwkhr4s7hsk4jvfskgdglj"; depends=[curl data_table httr sf]; }; + geoarrow = derive2 { name="geoarrow"; version="0.2.1"; sha256="0sdwlx4v9024m7lz93r9sfcg8zyzs3pvc7hm419y18vapqlvpm24"; depends=[nanoarrow wk]; }; + geobr = derive2 { name="geobr"; version="1.9.0"; sha256="1q7gichqlyahzmn4wmg2v1gbg0p3p40n19amz5m0vqxx2vbpq6dl"; depends=[curl data_table dplyr httr sf]; }; geocacheR = derive2 { name="geocacheR"; version="0.1.0"; sha256="04ckxmird6n179xvsx50cjdz046igjxxqdnz5pfxi8pdklnky20c"; depends=[dplyr magrittr stringr threewords tibble]; }; - geocausal = derive2 { name="geocausal"; version="0.2.0"; sha256="00i4prrgi02xv0h4r5xfmnl6h9b6arqnvd3vhzrgcmdqv4nl76xk"; depends=[data_table dplyr furrr ggplot2 ggpubr latex2exp mclust progressr purrr raster sf sp spatstat_explore spatstat_geom spatstat_model terra tidyr tidyselect]; }; + geocausal = derive2 { name="geocausal"; version="0.3.0"; sha256="0kbjyk9al54y2k9w96rpchv2gwk5f96g6a536fp4sfbhqlmpc0f3"; depends=[data_table dplyr furrr ggplot2 ggpubr latex2exp mclust progressr purrr sf spatstat_explore spatstat_geom spatstat_model terra tidyr tidyselect tidyterra]; }; geocmeans = derive2 { name="geocmeans"; version="0.3.4"; sha256="02h171flg295ixpgl2glav2ij0wbvy7kclazdlldw40461aar5nk"; depends=[dplyr fclust fmsb future_apply ggplot2 leaflet matrixStats plotly progressr Rcpp RcppArmadillo Rdpack reldist reshape2 sf shiny spdep terra tmap]; }; geodaData = derive2 { name="geodaData"; version="0.1.0"; sha256="003m5wff0q4fdlg64qispmhj2aw83isxg3ijxwkwhvi33bpwpq4z"; depends=[]; }; - geodata = derive2 { name="geodata"; version="0.5-9"; sha256="052gwxl3b0xb93s2b8755cmyxsyk0gy8c25v0hj81cwypnfykbhs"; depends=[terra]; }; + geodata = derive2 { name="geodata"; version="0.6-2"; sha256="0yiir9dslk6l60zf40kbvycd2x755whpp07is5bah1wa1wwgxwn5"; depends=[terra]; }; geodimension = derive2 { name="geodimension"; version="2.0.0"; sha256="1bx948hwy1c2src03vwvb29plzihqvsq92mbgg396xda560kxpfd"; depends=[dplyr sf snakecase tibble tidyselect]; }; - geodist = derive2 { name="geodist"; version="0.0.8"; sha256="09758v53r057rjsn844g2dc455ccndw1qlndl1xsm2gcp6ch2hr3"; depends=[]; }; + geodist = derive2 { name="geodist"; version="0.1.0"; sha256="16nldq2fph4nxy0rcy33z6vw9xar3ckvdpagbaqsa2w0023bzq7x"; depends=[]; }; geodiv = derive2 { name="geodiv"; version="1.1.0"; sha256="0580q71m71xd0kn9z8l536ypl31gx4fyw6cn1nc03sazrdilkz8r"; depends=[dplyr e1071 pracma Rcpp RcppArmadillo rlang sf spatial terra zoo]; }; geodrawr = derive2 { name="geodrawr"; version="2.0.0"; sha256="05irfyfpk5lgsh0wax8dqdyfw4prynxz1bhs9k1nrz8yn2dd0imn"; depends=[leaflet sf shiny shinydashboard]; }; geoelectrics = derive2 { name="geoelectrics"; version="0.2.2"; sha256="1zxikh4jj750grpnaazqm51q7yp5df5a77kljvmim4nazzrsyrpg"; depends=[fields lattice rgl]; }; geofacet = derive2 { name="geofacet"; version="0.2.1"; sha256="1bj201afh7df3smgmllglmgs7bkkc1k1arvjr7kwn1cnn67b3mzj"; depends=[geogrid ggplot2 ggrepel gridExtra gtable imguR rlang rnaturalearth sp]; }; - geofd = derive2 { name="geofd"; version="2.0"; sha256="1rsgy4nxfp1gi4vwh8zfzksr6sr2ga31kmd56q5m56gw530570ra"; depends=[fda]; }; geofi = derive2 { name="geofi"; version="1.0.15"; sha256="1v4gnbm5lfnd9rjiwjakbh73rifa084nhwdvjizmcfmznk0x0hxb"; depends=[curl dplyr httpcache httr purrr rlang sf xml2 yaml]; }; geogenr = derive2 { name="geogenr"; version="2.0.1"; sha256="17jg4mvwfaayda4igx4qigk83xbvn5s05y82393abwjiakp14lvi"; depends=[dplyr geomultistar httr readr rolap sf stringr tibble tidyr tidyselect]; }; geogrid = derive2 { name="geogrid"; version="0.1.2"; sha256="0jqqv5agnw071ysrmwz5r2z76f80rzm5bfl5g23gq1mbw85x8z8m"; depends=[Rcpp RcppArmadillo sf sp]; }; - geohabnet = derive2 { name="geohabnet"; version="2.0.0"; sha256="1fzdif3m80pfj53wax7j7i5342261jkz7zh4ivyiz10m1l2x6kid"; depends=[beepr config easycsv future future_apply geodata geosphere igraph magrittr memoise rlang rnaturalearth stringr terra viridisLite yaml]; }; geohashTools = derive2 { name="geohashTools"; version="0.3.3"; sha256="04hvlxq5fm4mcrlbx09j079522qhlyg4jg6dymwkmqxrwdibcnqq"; depends=[]; }; geojson = derive2 { name="geojson"; version="0.3.5"; sha256="0aj00zy603w03y36r2x8gvnya9c2xl73pnvi3wy5xky9kmbwh9g4"; depends=[jqr jsonlite lazyeval magrittr protolite sp]; }; geojsonR = derive2 { name="geojsonR"; version="1.1.1"; sha256="0l4zwyf3f827jpwbsv097d0h8i7pjwpkvdr89hc6vv9pzavfymhp"; depends=[R6 Rcpp RcppArmadillo]; }; @@ -10768,17 +10944,18 @@ in with self; { geomapdata = derive2 { name="geomapdata"; version="2.0-2"; sha256="1fp0qwsk4h7inp6jhz1b0zsdhv6frlxbbk8crv4xjzxzc72zhzdx"; depends=[]; }; geomaroc = derive2 { name="geomaroc"; version="0.1.1"; sha256="09j48ms1j7sqakznd2bj6sks1b6ckhch7ydhbdky4jk2acvl7lqw"; depends=[jsonlite sf]; }; geomerge = derive2 { name="geomerge"; version="0.3.4"; sha256="1isap50gbkcrbpg0wmzvxxa45vaa9szsxf9k9z3j2jjmv2gbg5mk"; depends=[geosphere ggplot2 gridExtra lubridate raster scales sf sp spdep terra]; }; - geometa = derive2 { name="geometa"; version="0.7-1"; sha256="18gr82k665y00h8mrq97mrr9l7p4m9m8b49dbgsh22hbz7j7c542"; depends=[crayon httr jsonlite keyring R6 readr XML]; }; + geometa = derive2 { name="geometa"; version="0.8-0"; sha256="14f1g5ijm2hv0cncrddfr8fca9517g0dyrkfgc0k1v301nhlvcn4"; depends=[crayon httr jsonlite keyring R6 readr XML]; }; geometries = derive2 { name="geometries"; version="0.2.4"; sha256="040ljxmzbjdr76p81ygnn5y0gzckz5k2arxkih5m5f3b6g62laf6"; depends=[Rcpp]; }; geometry = derive2 { name="geometry"; version="0.4.7"; sha256="0fq1sbjlc02idfsnvily7hgi6zgjvrjh7c57wz166k8vyl2l484n"; depends=[linprog lpSolve magic Rcpp RcppProgress]; }; geomod = derive2 { name="geomod"; version="0.1.0"; sha256="06a211cyhcicy5arpjxiglami56plkm6ybxbzbmjd0z6yn9yyd38"; depends=[arm caret Cubist e1071 kernlab nnet qrnn quantregForest randomForest ranger raster rasterVis rpart sp]; }; geomorph = derive2 { name="geomorph"; version="4.0.7"; sha256="16rqf1g5g3gvzjvjjahs06h00gl3n1vbmk8xzyh0c3rjmgdiz2x3"; depends=[ape ggplot2 jpeg Matrix rgl RRPP]; }; - geomtextpath = derive2 { name="geomtextpath"; version="0.1.3"; sha256="00rgqyz8y1qqnxp50szp9glkyjadas4gd2r3q5ha3fcxn1f4zv7p"; depends=[ggplot2 rlang scales systemfonts textshaping]; }; + geomtextpath = derive2 { name="geomtextpath"; version="0.1.4"; sha256="1a33rcks9hvg3jyiplzsm1na6n80n934zvbcm57n3jg6gxcv2v5s"; depends=[ggplot2 rlang scales systemfonts textshaping]; }; geomultistar = derive2 { name="geomultistar"; version="1.2.1"; sha256="00fkrbsi4gw7jkvfwwxnxxq9fbbkl6i2n5wmpzglwiy21y74y6pn"; depends=[dplyr generics purrr rlang RSQLite sf tibble tidyr tidyselect]; }; geonames = derive2 { name="geonames"; version="0.999"; sha256="0yz1b7y3vwa4izrhpry4n3iwzb7y67s5p3kgnd7d29cl5pcbpmqx"; depends=[rjson]; }; geonapi = derive2 { name="geonapi"; version="0.7-2"; sha256="0n6s9gvg9z8hn3sih0gj35x8zxspqa8h8bml50bhsl5y4gcfihgd"; depends=[geometa httr keyring openssl plyr R6 XML]; }; geonetwork = derive2 { name="geonetwork"; version="0.5.0"; sha256="0yg6pp2ya62qws6jdjxmhqjh5gdn4cfm6zbljazc35xf7d97jjnx"; depends=[geosphere igraph sf]; }; - geoperu = derive2 { name="geoperu"; version="0.0.0.1"; sha256="1vmbm9zlkgb8qcw9d1vdfkvfajxh3nyhk5dkkilsklzfz08wqw8f"; depends=[curl data_table httr sf]; }; + geonode4R = derive2 { name="geonode4R"; version="0.1-1"; sha256="1pyyknkg9dv58vq8w4pmxd36j8l352zb2jv99skvyg0vn07m6bax"; depends=[httr keyring openssl R6 readr]; }; + geoperu = derive2 { name="geoperu"; version="0.0.0.2"; sha256="1hzdbghskdp0gnngycjn1z6zxdzas71mg7pw2bh6xw7ll52agkp5"; depends=[curl data_table httr sf]; }; georefdatar = derive2 { name="georefdatar"; version="0.6.5"; sha256="1cqdl4zskgxjb1s29ka6q6wk7kpvrapjl40q5pfjwxh16b3bfdbh"; depends=[Rdpack]; }; georob = derive2 { name="georob"; version="0.3-19"; sha256="0mxd29viapqzwmqy097r2ykkqjch5v3qn5p3ixz5kp2q9xlqfq2p"; depends=[abind constrainedKriging fields lmtest nleqslv nlme quantreg robustbase snowfall sp]; }; geos = derive2 { name="geos"; version="0.2.4"; sha256="03cxm9rby7qmk9apqk3sh373rnzqcrj23cn6q153gq93lx372b8n"; depends=[libgeos wk]; }; @@ -10790,7 +10967,7 @@ in with self; { geosphere = derive2 { name="geosphere"; version="1.5-18"; sha256="1h6sqvxwxv22js6hz4s8sjk50ygw0y34icbbbdb2v36ca3q6zzwr"; depends=[Rcpp sp]; }; geospt = derive2 { name="geospt"; version="1.0-4"; sha256="1fmvrsmh4nfc4g8z9ca5k4c4pm7wy218crhigp58n6i6avvf9scz"; depends=[fields genalg gsl gstat limSolve MASS minqa plyr sgeostat sp TeachingDemos]; }; geosptdb = derive2 { name="geosptdb"; version="1.0-1"; sha256="1n1jvigavcxlbc5wki74lnhax3060i44m1cvkcr664wsjqhx3kl2"; depends=[FD fields geospt gsl limSolve minqa sp StatMatch]; }; - geostan = derive2 { name="geostan"; version="0.5.4"; sha256="1m1xxx12ry244nkx0sn7cvlxxi2p7ms9n4irb2qqrgliq24db9v6"; depends=[BH ggplot2 gridExtra MASS Matrix Rcpp RcppEigen RcppParallel rstan rstantools sf signs spdep StanHeaders truncnorm]; }; + geostan = derive2 { name="geostan"; version="0.6.2"; sha256="078lk4c9igkm3il0yfcv2i64rj1fr3b5qz3d3szly2jh2ba5zdgh"; depends=[BH ggplot2 gridExtra MASS Matrix Rcpp RcppEigen RcppParallel rstan rstantools sf signs spdep StanHeaders truncnorm]; }; geostats = derive2 { name="geostats"; version="1.6"; sha256="0fmp6883a3xqay3wcc3bz7czhyik1mki3zn5z195iag11yvc5wr6"; depends=[]; }; geostatsp = derive2 { name="geostatsp"; version="2.0.6"; sha256="10xmdgmmd4f67778g02hyqzkk9zj9c0cdfs9cw8py1b413vfclyv"; depends=[abind Matrix numDeriv terra]; }; geotools = derive2 { name="geotools"; version="0.1"; sha256="0d0vf9dvrrv68ivssp58qzaj8vra26ms33my097jmzmgagwy1spd"; depends=[]; }; @@ -10832,7 +11009,7 @@ in with self; { gfilogisreg = derive2 { name="gfilogisreg"; version="1.0.3"; sha256="1x9j2ac7lk2gkcwxkvyc3bj23z5bibhx64lj4nwsgdjq14677502"; depends=[BH EigenR lazyeval rcdd Rcpp RcppArmadillo roptim spatstat spatstat_geom]; }; gfoRmula = derive2 { name="gfoRmula"; version="1.0.4"; sha256="0g9d3z031f4ya3xkm82c4qy0548p38x8c6j0m3vdfx414y4k8mih"; depends=[data_table ggplot2 ggpubr nnet progress stringr survival truncnorm truncreg]; }; gfonts = derive2 { name="gfonts"; version="0.2.0"; sha256="19ja087k767bq71v2w4jcpynd62ysrqmjf6rpfnmmd40aanyxqkj"; depends=[crayon crul glue htmltools jsonlite shiny]; }; - gfpop = derive2 { name="gfpop"; version="1.1.1"; sha256="0jm7ri25qhkc80s4vfz2p9516m7wl0x8fcci6mggm4mc4ksx78f4"; depends=[Rcpp]; }; + gfunctions = derive2 { name="gfunctions"; version="1.0"; sha256="1rjrw4g0daw219spcz0pmy78m68gidk7vdbxd31wqgn1p7xwa4jb"; depends=[sandwich zoo]; }; gg_gap = derive2 { name="gg.gap"; version="1.3"; sha256="0m66050ryn31xmsmmikjsssllasvjdmp9yjbwfdwfpwdv106zn9h"; depends=[cowplot ggplot2]; }; ggBubbles = derive2 { name="ggBubbles"; version="0.1.4"; sha256="116rl8j0s9xwhh9jl5yj9fspkhv2zrirbx9247hhns9ngrdn4i3x"; depends=[dplyr ggplot2]; }; ggChernoff = derive2 { name="ggChernoff"; version="0.3.0"; sha256="0dkr3vl4a3css19j53x1c1gxxgjg57d444ahxrrrxsyva49lnq1y"; depends=[ggplot2 scales]; }; @@ -10849,7 +11026,7 @@ in with self; { ggRandomForests = derive2 { name="ggRandomForests"; version="2.2.1"; sha256="05w1rs0mg2nj5j1rd32s1mcj294p4zm24p2d87535rmslqmya9c7"; depends=[ggplot2 randomForest randomForestSRC survival tidyr]; }; ggResidpanel = derive2 { name="ggResidpanel"; version="0.3.0"; sha256="1vsjw229pd36100ix1sgfmk5lb9b0fx3l6pxg1irsfhm2ypbg1ig"; depends=[cowplot ggplot2 MASS plotly qqplotr stringr]; }; ggRtsy = derive2 { name="ggRtsy"; version="0.1.0"; sha256="04q9674z0wgpd5igjhggih348jd6lv6nbwz4na597pn5d3pirhvl"; depends=[dplyr ggplot2 magrittr purrr stringr tibble]; }; - ggScatRidges = derive2 { name="ggScatRidges"; version="0.1.0"; sha256="02p9pkfw3jscmc5c836qq73z9jpyxv4fp1ci5ma6mcwyzzzfnjpc"; depends=[cowplot ggplot2 ggpubr ggridges hrbrthemes viridis]; }; + ggScatRidges = derive2 { name="ggScatRidges"; version="0.1.1"; sha256="1blwzynrzywdgqllcgjjb0j0xc8fwplybnx3mfmiysppcvrk47p9"; depends=[cowplot ggplot2 ggpubr ggrepel ggridges hrbrthemes viridis]; }; ggThemeAssist = derive2 { name="ggThemeAssist"; version="0.1.5"; sha256="1biw91a8p13h62v4w3yim6ghr98khmyhb3qd0h04asf91vvmpxbv"; depends=[formatR ggplot2 miniUI rstudioapi shiny]; }; ggTimeSeries = derive2 { name="ggTimeSeries"; version="1.0.2"; sha256="0sd39svwi3ai81szahd49a8qvsydi1922z4q6r2r70fpbfwi4qrq"; depends=[data_table ggplot2]; }; ggVennDiagram = derive2 { name="ggVennDiagram"; version="1.5.2"; sha256="0hzjbpd3f3zn169s5nvnv7b4wlrwdn3r0pk0vgkdnhchl75g0qni"; depends=[aplot dplyr forcats ggplot2 tibble venn yulab_utils]; }; @@ -10860,11 +11037,12 @@ in with self; { ggalt = derive2 { name="ggalt"; version="0.4.0"; sha256="0ssa274d41vhd6crzjz7jqzbwgnjimxwxl23p2cx35aqs5wdfjpc"; depends=[ash dplyr extrafont ggplot2 gtable KernSmooth maps MASS plotly proj4 RColorBrewer scales tibble]; }; ggamma = derive2 { name="ggamma"; version="1.0.1"; sha256="1zc4p2bz4pxqycrzgb9wwl53lxqcikxsihna6ff8pmw1n623j85z"; depends=[]; }; gganimate = derive2 { name="gganimate"; version="1.0.9"; sha256="016nky797h4093qrpynq5rr1p7h4chpv1hyngpcs2csr1064rjmz"; depends=[cli ggplot2 glue lifecycle progress rlang scales stringi transformr tweenr vctrs]; }; - ggarchery = derive2 { name="ggarchery"; version="0.4.2"; sha256="1vbknccfr18gawia353appvj3fc3ic8wrkgg0rd2aiz48av496yz"; depends=[dplyr ggplot2 glue magrittr purrr rlang tidyr]; }; + ggarchery = derive2 { name="ggarchery"; version="0.4.3"; sha256="1fgcy26gq0cpk4vhc412yw5wj8j4afs21lp7fcqsdah1xmpnhym2"; depends=[dplyr ggplot2 glue magrittr purrr rlang tidyr]; }; + ggarrow = derive2 { name="ggarrow"; version="0.1.0"; sha256="14jvrjrzp7wk94c3s0ixdcbhfsx9nlr5rf85a5gmrhvq7qjaicxc"; depends=[cli ggplot2 polyclip rlang scales vctrs]; }; ggautomap = derive2 { name="ggautomap"; version="0.3.2"; sha256="0fy1saym15l3d76ix26kz9il3nzsypchh028vigcvan7g0yg7168"; depends=[cartographer cli dplyr ggmapinset ggplot2 packcircles rlang sf tidyr vctrs]; }; ggbeeswarm = derive2 { name="ggbeeswarm"; version="0.7.2"; sha256="1rcw54isai05np4fj19vcxx2vcxq7y2nm3az9m8xwbc9pdjs4z7x"; depends=[beeswarm cli ggplot2 lifecycle vipor]; }; ggbiplot = derive2 { name="ggbiplot"; version="0.6.2"; sha256="0ys4l5fhy1p1ys3q7012vxafmfrzaqlvnzmkmv32zar32j3hvmkc"; depends=[ggplot2 scales]; }; - ggblanket = derive2 { name="ggblanket"; version="6.0.0"; sha256="0rb6xhh323psxss8ccz681nwaxlxxa8brfzqdzrylr9k7pz828fd"; depends=[dplyr farver forcats ggplot2 hms lubridate magrittr purrr rlang scales snakecase stringr tidyr tidyselect viridisLite]; }; + ggblanket = derive2 { name="ggblanket"; version="9.1.1"; sha256="1nnb6kx6yl4rdfjib9xp406wb533zwl3wcfv0d8nljq094n8j7hy"; depends=[colorspace dplyr farver forcats ggplot2 hms labelled lubridate magrittr purrr rlang scales snakecase stringr tidyr tidyselect viridisLite]; }; ggblend = derive2 { name="ggblend"; version="0.1.0"; sha256="0wzy9lnvqxjl3511vk1y6nxpvhk9hvk1xq18bbwsv6886npls56z"; depends=[ggplot2 rlang]; }; ggborderline = derive2 { name="ggborderline"; version="0.2.0"; sha256="1acb3z2dwasmn4ngc7wqk3y4n34ah3fhdxsbdl3dmbc75nmdsn5a"; depends=[cli ggplot2 rlang vctrs]; }; ggbrace = derive2 { name="ggbrace"; version="0.1.1"; sha256="0p5k9lp0c34ry3mf39w0j9pi8irych9p6lvh6zyk82my18b25yk0"; depends=[ggplot2]; }; @@ -10877,9 +11055,10 @@ in with self; { ggcharts = derive2 { name="ggcharts"; version="0.2.1"; sha256="1c0gdn8skkm82f3qxv9551l36zwqcga9b9sbc48q8hp71ay4ac6b"; depends=[colorspace dplyr ggplot2 lifecycle magrittr patchwork rlang]; }; ggcleveland = derive2 { name="ggcleveland"; version="0.1.0"; sha256="1pl9qhj7p5kflx0ni59hq1k9afqchghg5wig9v1ml5pqrjz70pxa"; depends=[dplyr egg ggplot2 lattice magrittr readr rlang stringr tibble tidyr vctrs]; }; ggcorrplot = derive2 { name="ggcorrplot"; version="0.1.4.1"; sha256="0yd865lfs4144jqh9ilznqa69rj0183ashnhvmjmis87zw69a45q"; depends=[ggplot2 reshape2]; }; - ggcorset = derive2 { name="ggcorset"; version="0.4.5"; sha256="18i7xj3h0v556y2m7b1cnlqhzfp9jv5gpchhz5rmm8d6y3k4czii"; depends=[dplyr gghalves ggplot2 ggstance]; }; + ggcorset = derive2 { name="ggcorset"; version="0.5.0"; sha256="1vswnr15xbsl3kbd7nbd33mc9931d4lk3mpx8ri0ph37h3b0sif9"; depends=[gghalves ggplot2]; }; ggdag = derive2 { name="ggdag"; version="0.2.12"; sha256="0q5iwafrhq77wxdc9dj9jl5a0rsj3rz3bjz8qb2yjd5j1qlj2mlx"; depends=[dagitty dplyr forcats ggplot2 ggraph ggrepel igraph magrittr pillar purrr rlang stringr tibble tidygraph]; }; ggdark = derive2 { name="ggdark"; version="0.2.1"; sha256="1w93g2j4g45x9s841v9zi18lxzda81ipa13fajqc6p9xk8frvgrf"; depends=[ggplot2]; }; + ggdaynight = derive2 { name="ggdaynight"; version="0.1.3"; sha256="1wvpmpyfnq6j6wkk8ayaddb4yyk945w4isjn57dpkvabfk59cvfh"; depends=[ggplot2]; }; ggdemetra = derive2 { name="ggdemetra"; version="0.2.8"; sha256="18i96jkbc0zm9xgn5250v2316kccr5vcxag2gii7lag7bhj6fq51"; depends=[ggplot2 ggrepel gridExtra RJDemetra]; }; ggdendro = derive2 { name="ggdendro"; version="0.2.0"; sha256="0sdayyzvhkbli0ha68mc0f7cgp36njv9ign37d63l21hvd6w6h0r"; depends=[ggplot2 MASS]; }; ggdensity = derive2 { name="ggdensity"; version="1.0.0"; sha256="01ym1af6w39zg6xh5mls8kwl4mg0lpjd94j0hm2xrgl39llpwx6r"; depends=[ggplot2 isoband MASS scales tibble vctrs]; }; @@ -10888,7 +11067,7 @@ in with self; { gge = derive2 { name="gge"; version="1.8"; sha256="1c8f8g4nw245cjxpx3fjw03cgwc1q13k9ly9jx1jcc6k6hsdkx9k"; depends=[nipals reshape2]; }; ggeasy = derive2 { name="ggeasy"; version="0.1.4"; sha256="1dppcffkyr6ybpz17zkq97g0p2hs1f8iwg6vwrw124pbgr065dr0"; depends=[ggplot2 rlang]; }; ggedit = derive2 { name="ggedit"; version="0.4.1"; sha256="1mnk2ygnflkp9bx8pbf41vb9fyhcnkqrw8j01vx7p56iga3lwi4g"; depends=[colourpicker dplyr ggplot2 miniUI plyr purrr rlang rstudioapi scales shiny shinyAce shinyBS tibble tidyr]; }; - ggeffects = derive2 { name="ggeffects"; version="1.5.0"; sha256="0yczz34rn4sikwzqpm3w47zwm201mv4mljrcgpb50is06g3l7azk"; depends=[insight]; }; + ggeffects = derive2 { name="ggeffects"; version="1.6.0"; sha256="02cpiadigrxbw2qnajc1pkqvkl3hzw0yqidsb8lp67vcsx3czh7z"; depends=[insight]; }; ggenealogy = derive2 { name="ggenealogy"; version="1.0.3"; sha256="1dak8nwdjiv7947w4pf00vhh6bida7gahv4ijqa3m1k22j2mr2qa"; depends=[ggplot2 igraph plotly plyr reshape2]; }; ggetho = derive2 { name="ggetho"; version="0.3.7"; sha256="0bdqx3x42jp22bs297nhdgzvywhq4cy0lwmwprl7vmjjh8lwvkxk"; depends=[behavr cli data_table ggplot2 labeling rlang scales stringr]; }; ggfacto = derive2 { name="ggfacto"; version="0.3.0"; sha256="069qzz2192vq6zsqpq2wqxhj6a26g4mpdbng7ing4ha9xfnp9h7g"; depends=[data_table dplyr FactoMineR forcats ggforce ggiraph ggplot2 ggrepel gridExtra magrittr purrr rlang stringr tabxplor tibble tidyr tidyselect vctrs withr]; }; @@ -10899,8 +11078,9 @@ in with self; { ggfocus = derive2 { name="ggfocus"; version="1.0.0"; sha256="03q0rz7flm8sc8hrlkcm5fz66qiyxb8z8q4bh9dglhw0jc8q1fvb"; depends=[dplyr ggplot2 magrittr RColorBrewer rlang]; }; ggforce = derive2 { name="ggforce"; version="0.4.2"; sha256="1a2i1rl27yqh8kxjpphwcv05p19l2aw07q9gxl4x8iv8xpkb0if1"; depends=[cli ggplot2 gtable lifecycle MASS polyclip Rcpp RcppEigen rlang scales systemfonts tidyselect tweenr vctrs withr]; }; ggformula = derive2 { name="ggformula"; version="0.12.0"; sha256="0vbpivyxms46px3wqkbl1wq199mqdxq94gsiplv4i7lz0lzghsfm"; depends=[ggplot2 ggridges labelled mosaicCore rlang scales stringr tibble]; }; - ggfortify = derive2 { name="ggfortify"; version="0.4.16"; sha256="05h3a4ycain0y621anjpjphsjlhpayb2nnd6n70rlymrbilfw6xv"; depends=[dplyr ggplot2 gridExtra scales stringr tibble tidyr]; }; - ggfun = derive2 { name="ggfun"; version="0.1.4"; sha256="1i1kcpcy3ik5p9c8742cq3syg8civ7iq6ff1fr0240gl3ca1lx6w"; depends=[cli ggplot2 rlang]; }; + ggfortify = derive2 { name="ggfortify"; version="0.4.17"; sha256="1ygbvk3b99mabwqc9hh5lz3adj1i05ym7i8b6kbgid8cgrbaaxag"; depends=[dplyr ggplot2 gridExtra scales stringr tibble tidyr]; }; + ggfoundry = derive2 { name="ggfoundry"; version="0.2.0"; sha256="06nc6866lzb417z2bdcjy2qv799bfgkbkalgrsvx5nc1ggq2vpxf"; depends=[ggplot2 grImport2 lifecycle rlang]; }; + ggfun = derive2 { name="ggfun"; version="0.1.5"; sha256="1lqngd9333vlai88q2w5hrp9mmzdlvjx9pvn7zr9fx61d3yh2v7y"; depends=[cli dplyr ggplot2 rlang]; }; ggfx = derive2 { name="ggfx"; version="1.0.1"; sha256="1lys5lzlilzvd6dm7rkxv7nvnp80fajl5yzhpwcbb5az5832ik27"; depends=[ggplot2 gtable magick ragg rlang]; }; gggap = derive2 { name="gggap"; version="1.0.1"; sha256="1iidxm7qcrg0isw2q27cmjbfb3pkfj5jcg1nj8lgy6xmydw3vrw3"; depends=[cowplot ggplot2]; }; gggenes = derive2 { name="gggenes"; version="0.5.1"; sha256="08s0fhk2kz3ks64nfmdbd8p3swkn62cbw7dpbqgk9ydpmh5gpjbj"; depends=[ggfittext ggplot2 rlang]; }; @@ -10910,8 +11090,7 @@ in with self; { ggh4x = derive2 { name="ggh4x"; version="0.2.8"; sha256="1vk2xqf1m14zy0jynv73f56a3slrpa9nymvw236v9ixgafarwkm8"; depends=[cli ggplot2 gtable lifecycle rlang scales vctrs]; }; gghalfnorm = derive2 { name="gghalfnorm"; version="1.1.2"; sha256="1sy0m6pqmnjbqv60rljyblhis0dxwkhw751jhlad5arcgrcwf4k8"; depends=[ggplot2 ggrepel]; }; gghalves = derive2 { name="gghalves"; version="0.1.4"; sha256="1qsxq2zbz4zcpqc7949apznn9f2c959jwwx010bl4gf2p6vchfx7"; depends=[ggplot2 gtable]; }; - gghdr = derive2 { name="gghdr"; version="0.2.0"; sha256="1id0ky2mf656xqsmg76f627zw8iff4q1wzgih32nryk0hfvm2gfi"; depends=[digest farver ggplot2 hdrcde scales tibble]; }; - gghdx = derive2 { name="gghdx"; version="0.1.2"; sha256="1h5w09vsk4gjzs6v7pqd4krcsw696hsaz8rqpy3z6g499glnb2qb"; depends=[dplyr ggplot2 ggthemes magrittr purrr rlang showtext sysfonts tibble]; }; + gghdx = derive2 { name="gghdx"; version="0.1.3"; sha256="01y0c9mlk1c25r5v0kjyhmsgb77qaq4ykg8hhjr1kn1w5gfylnbk"; depends=[dplyr ggplot2 ggthemes lifecycle magrittr purrr rlang showtext sysfonts tibble]; }; ggheatmap = derive2 { name="ggheatmap"; version="2.2"; sha256="13cf3xk5drb6dfr3gcbgfi0hk6akk9b3g9f3c2jy6hz8rz5xnyn6"; depends=[aplot factoextra ggplot2 ggpubr patchwork tibble tidyr]; }; gghighlight = derive2 { name="gghighlight"; version="0.4.1"; sha256="1lsvy9ha4d8zs927h8jbdj5r39xqcy1n6g5prw4awiihdvcv9v66"; depends=[dplyr ggplot2 ggrepel lifecycle purrr rlang tibble]; }; gghilbertstrings = derive2 { name="gghilbertstrings"; version="0.3.3"; sha256="0b3xp1w6fkkmjh7gihhfkp4npx553a75bvsal3w4j57xa34l8rap"; depends=[dplyr ggplot2 lifecycle magrittr Rcpp rlang tibble]; }; @@ -10919,9 +11098,9 @@ in with self; { ggimage = derive2 { name="ggimage"; version="0.3.3"; sha256="0jm316dqnnnsifrwkh6q2xs07dqazaa77s713pr7h94q1r8ab1bs"; depends=[ggfun ggplot2 ggplotify jsonlite magick scales tibble withr]; }; ggimg = derive2 { name="ggimg"; version="0.1.2"; sha256="1ynfq8lwlw851j00k7mm63w5yyqkd7v67fs8g2nwxk7ac0wb44ph"; depends=[abind ggplot2 jpeg png]; }; gginference = derive2 { name="gginference"; version="0.1.3"; sha256="1r960cglnkii8xih4r1r7wd857jqn53f08zi9dnj54bpqrs374zx"; depends=[ggplot2 rlang]; }; - gginnards = derive2 { name="gginnards"; version="0.1.2"; sha256="1z4wbh4biywvxr29j1rll6h4yh3hlhrypa5903pmzvpgdy9n2baw"; depends=[ggplot2 magrittr rlang stringr tibble]; }; + gginnards = derive2 { name="gginnards"; version="0.2.0"; sha256="0xhnn0kcmlggyx50dv4avhs4ngfnya2m928dqpix8km4c3y140qg"; depends=[ggplot2 magrittr rlang stringr tibble]; }; ggip = derive2 { name="ggip"; version="0.3.2"; sha256="0mg3p3lq3afw96ddk89v62jjd8ii7nhdcwlmdnmdxrw6awcmvyhk"; depends=[cli dplyr ggplot2 ipaddress Rcpp rlang tidyr vctrs]; }; - ggiraph = derive2 { name="ggiraph"; version="0.8.9"; sha256="048dkdwkzpgrg6x0jzljzxbd89z91akgmb31rya1v4s5qbrpqwdb"; depends=[cli ggplot2 htmltools htmlwidgets purrr Rcpp rlang systemfonts uuid vctrs]; }; + ggiraph = derive2 { name="ggiraph"; version="0.8.10"; sha256="17vdw9xaizcdf6fcbyhz9l514kk4w4dz9yvikbz9bvfx93a9z5ps"; depends=[cli ggplot2 htmltools htmlwidgets purrr Rcpp rlang systemfonts uuid vctrs]; }; ggiraphExtra = derive2 { name="ggiraphExtra"; version="0.3.0"; sha256="0q8ppixw5i1hpphmswpw6lvq7gx8rx4gfs2b8d31wbn32ziiv2rk"; depends=[dplyr ggiraph ggplot2 magrittr mgcv mycor plyr ppcor purrr RColorBrewer reshape2 scales sjlabelled sjmisc stringr tidyr]; }; ggisotonic = derive2 { name="ggisotonic"; version="0.1.2"; sha256="1jz1qhx51gzq6lbk24pjxc55nhzc6alsy9h870jn88mn9fpx4lhp"; depends=[dplyr fdrtool ggplot2]; }; ggjoy = derive2 { name="ggjoy"; version="0.4.1"; sha256="012md2m0jqfcccb933j423m3ck31v3p0pd41gjxpyg9082y7ixyj"; depends=[ggplot2 ggridges]; }; @@ -10938,8 +11117,9 @@ in with self; { ggmix = derive2 { name="ggmix"; version="0.0.2"; sha256="158pzmr4vmy2qxmp3nrabjgkg11mrdvl1skzxgwida2is900f7gf"; depends=[glmnet MASS Matrix]; }; ggmosaic = derive2 { name="ggmosaic"; version="0.3.3"; sha256="1zm1zfbd0qk6icw65m9hz1hgyqj632ibq3qilidvx5jy7jh8nbpy"; depends=[dplyr ggplot2 ggrepel plotly productplots purrr rlang scales tidyr]; }; ggmr = derive2 { name="ggmr"; version="0.1.1"; sha256="0941rvh7m5knlhp0m0mhm4j8spmch0pyvwhzs3bycq3vzlvzv1w7"; depends=[MASS]; }; + ggmugs = derive2 { name="ggmugs"; version="0.6.0"; sha256="1qky7ywk8np24hgn1lj4mpd4snwlvngx8ix7ack4gxblixl9s0z0"; depends=[data_table dplyr ggplot2 purrr tibble tidyr]; }; ggmuller = derive2 { name="ggmuller"; version="0.5.6"; sha256="069y6wf9lbkz32kmkrc61vjc0p9fpr5191103dvaz0nj6gpd686a"; depends=[ape dplyr ggplot2]; }; - ggmulti = derive2 { name="ggmulti"; version="1.0.6"; sha256="0cynzl5aamm8ra6jz3j6n2frd680f35p3f38gcx12zsk1vzsl4fr"; depends=[cli dplyr ggplot2 tidyr]; }; + ggmulti = derive2 { name="ggmulti"; version="1.0.7"; sha256="071h76imfsm6p9ml9pkfsar3d6z1nawd9m7f82smy4csb58iz5i3"; depends=[cli dplyr ggplot2 tidyr]; }; ggnetwork = derive2 { name="ggnetwork"; version="0.5.13"; sha256="0ipxw6j36n0hfn0nsimw8jbjszvm1d0hadwg4zirvn6v36npwabc"; depends=[ggplot2 ggrepel igraph network sna]; }; ggnewscale = derive2 { name="ggnewscale"; version="0.4.10"; sha256="1j8d512qhdlhfp3hb36d1dqlqlxs0i303mnn31xnq1adcwwibmlz"; depends=[ggplot2]; }; ggnormalviolin = derive2 { name="ggnormalviolin"; version="0.1.2"; sha256="1gbv2b86nznw5bs05c4ns96b8hsxkhikhcf8syl2qbbafzy8vx6y"; depends=[dplyr ggplot2 magrittr scales]; }; @@ -10949,30 +11129,29 @@ in with self; { ggpackets = derive2 { name="ggpackets"; version="0.2.1"; sha256="1fdyr0m5rf1wy2pydvk12g7lw338iw026rxz98mv8kryrs32q7kh"; depends=[ggplot2 rlang]; }; ggpage = derive2 { name="ggpage"; version="0.2.3"; sha256="1qi8ydq3fxb1smk0jg9z1cv2xjq8c1lsnmz8l7c61rvdbjm3710v"; depends=[dplyr ggplot2 magrittr purrr rlang stringr tidytext]; }; ggparallel = derive2 { name="ggparallel"; version="0.4.0"; sha256="1flhy0731phknzxwmr6lza7a6r0mqy7j8z93p4aala3d3cg2x1nw"; depends=[ggplot2 plyr reshape2]; }; - ggparliament = derive2 { name="ggparliament"; version="2.0.0"; sha256="04za4lm3lir95bgda1rzlsyil2fkac3j5f5f1pjw2samy6pjz80r"; depends=[dplyr ggplot2 rlang]; }; ggparty = derive2 { name="ggparty"; version="1.0.0"; sha256="0s6hr5p930kl3pj6ajwgwqz6yikc3l9hhzy1yn0nqc0r8pp2jyqf"; depends=[checkmate ggplot2 gtable partykit rlang survival]; }; ggpath = derive2 { name="ggpath"; version="1.0.1"; sha256="0iq9fl8zcyc5ihi3pf6h8pb6j7ys506yziq0qr0xgyw803cvl23m"; depends=[cachem cli ggplot2 magick memoise rappdirs rlang]; }; - ggpattern = derive2 { name="ggpattern"; version="1.0.1"; sha256="1b9bfxlg64gr39bz58fp6jmg4nziwk8rk94rzpjsqhfhpwi2lrgr"; depends=[ggplot2 glue gridpattern rlang scales]; }; + ggpattern = derive2 { name="ggpattern"; version="1.1.1"; sha256="1xlh1y6q10iqk1mbwdrr1vqmgmim3z27znbb5sbwgmm9yfxzj37s"; depends=[cli ggplot2 glue gridpattern lifecycle rlang scales vctrs]; }; ggpcp = derive2 { name="ggpcp"; version="0.2.0"; sha256="1xkxsxnxcyy8rrazzbl38g405cxjjjz6a720cdm4bsk03q2q4rar"; depends=[assertthat dplyr ggplot2 rlang tibble tidyr tidyselect]; }; ggperiodic = derive2 { name="ggperiodic"; version="1.0.3"; sha256="03gsbdqqxi0j4slp61bzrn4m2sjhh9fvcy1a1h5vcg4ax233j270"; depends=[data_table dplyr ggplot2 sticky tidyselect]; }; ggpicrust2 = derive2 { name="ggpicrust2"; version="1.7.3"; sha256="0zjlsvzl2f74fvqw4ijnai23qwhlcpgd5p8z9dclnwnsgdbm6hcq"; depends=[ALDEx2 aplot circlize DESeq2 dplyr edgeR GGally ggh4x ggplot2 ggprism lefser limma Maaslin2 metagenomeSeq MicrobiomeStat patchwork readr SummarizedExperiment tibble tidyr]; }; ggpie = derive2 { name="ggpie"; version="0.2.5"; sha256="11c431ggrhyxiql1v9qajp568jri6hlp1kgl334j4f7sgyh73ng5"; depends=[dplyr ggnewscale ggplot2 ggrepel magrittr RColorBrewer rlang scales stringr tibble]; }; - ggplate = derive2 { name="ggplate"; version="0.1.1"; sha256="1a6c0f671i5368hpc3ilmzpx2vkdmxrzzgbbxpbhkhpz8cl6z311"; depends=[dplyr farver forcats ggplot2 purrr rlang scales stringr tidyr]; }; + ggplate = derive2 { name="ggplate"; version="0.1.3"; sha256="18ibiizxbzyshaxgw2ff639nn36mha5bv6yxa6960wjyx3z78772"; depends=[dplyr farver forcats ggplot2 purrr rlang scales stringr tidyr]; }; ggplot_multistats = derive2 { name="ggplot.multistats"; version="1.0.0"; sha256="1afzfa86vc484bcwpg7m1ky03jpax584rigzgai8w06pifkmz0il"; depends=[ggplot2 hexbin rlang scales]; }; - ggplot2 = derive2 { name="ggplot2"; version="3.5.0"; sha256="1qlh231dwsa7j0pzlw6xdm68d7r0v64916p66bg9lh1dw3a1ryh7"; depends=[cli glue gtable isoband lifecycle MASS mgcv rlang scales tibble vctrs withr]; }; + ggplot2 = derive2 { name="ggplot2"; version="3.5.1"; sha256="08a72kizg42mdm35170fnpn8l6r4n3j1yvbgiq1k8dlvz4jb8n3w"; depends=[cli glue gtable isoband lifecycle MASS mgcv rlang scales tibble vctrs withr]; }; ggplot2_utils = derive2 { name="ggplot2.utils"; version="0.3.1"; sha256="0fsardsv77rfm2idynqi5zb3wrqcjyckxxchvj894kgb1qfpa27v"; depends=[checkmate EnvStats ggplot2 ggpp ggstats survival]; }; ggplot2movies = derive2 { name="ggplot2movies"; version="0.0.1"; sha256="067ld6djxcpbliv70r2c1pp4z50rvwmn1xbvxfcqdi9s3k9a2v8q"; depends=[]; }; ggplotAssist = derive2 { name="ggplotAssist"; version="0.1.3"; sha256="1g0s1dkbrxmwqjqppagdbnx24s0nbjn09xwxix3dkfssz6drhala"; depends=[dplyr editData gcookbook ggplot2 ggthemes magrittr miniUI moonBook rstudioapi scales shiny shinyAce shinyWidgets stringr tibble tidyverse]; }; ggplotgui = derive2 { name="ggplotgui"; version="1.0.0"; sha256="1yfglg5438mwyml845isimzma5q6824x19jka509ng49bzmf1za0"; depends=[ggplot2 haven plotly RColorBrewer readr readxl shiny stringr]; }; ggplotify = derive2 { name="ggplotify"; version="0.1.2"; sha256="11qfk4pj0bb013m9964q2fsrj4x39c4kwh84vfyi3qhlkrsybfh1"; depends=[ggplot2 gridGraphics yulab_utils]; }; ggplotlyExtra = derive2 { name="ggplotlyExtra"; version="0.0.1"; sha256="1m2rhylpzj934gb50lxjp47rxz0kwl9i1p3n7w1rz4qi96pr5p1c"; depends=[ggplot2 plotly rlang]; }; - ggpmisc = derive2 { name="ggpmisc"; version="0.5.5"; sha256="1j49q1fbihxir5q5llqwyga111j3lggifzjk3cvq8lphim4c3jia"; depends=[confintr dplyr generics ggplot2 ggpp lmodel2 lubridate MASS multcomp multcompView plyr polynom quantreg rlang scales splus2R tibble]; }; + ggpmisc = derive2 { name="ggpmisc"; version="0.5.6"; sha256="0w514js5q6xchbbw2x3085d7parwa8nqaj4fvjplhpfah6rya2dv"; depends=[confintr dplyr generics ggplot2 ggpp lmodel2 lubridate MASS multcomp multcompView plyr polynom quantreg rlang scales splus2R tibble]; }; ggpointdensity = derive2 { name="ggpointdensity"; version="0.1.0"; sha256="0c9a14j3b0hvamqylhzldw2hjdxmfbllwahjkf3gg2rw337ld9iy"; depends=[ggplot2]; }; ggpointless = derive2 { name="ggpointless"; version="0.1.0"; sha256="1qzd5jcac3syl9pgxzq2r7vmrp7kzd2h56xa1y6hich2rhzywva9"; depends=[ggplot2 lifecycle rlang]; }; ggpol = derive2 { name="ggpol"; version="0.0.7"; sha256="11xr26kwmkjjb51wm44ydv0vcinc6k6faqwx4s2faj4iwidlys1m"; depends=[dplyr ggplot2 glue gtable plyr rlang tibble]; }; ggpolar = derive2 { name="ggpolar"; version="0.2.2"; sha256="18m0nd74cz30gr961404wnib5v2wddpf1iv453s5dri0vxlmdl6w"; depends=[ggplot2 rlang]; }; ggpolypath = derive2 { name="ggpolypath"; version="0.3.0"; sha256="0ipn1lhmpcdxim3235kxsw6vkj7cf7smqdm534jfa75ski4q9xpy"; depends=[ggplot2]; }; - ggpp = derive2 { name="ggpp"; version="0.5.6"; sha256="0xnjbxd1lkg85c2hsx7cgxqsqb3dc0pma8jwdlqfgg7d519d60xa"; depends=[dplyr ggplot2 glue gridExtra lubridate magrittr MASS polynom rlang scales stringr tibble xts zoo]; }; + ggpp = derive2 { name="ggpp"; version="0.5.7"; sha256="0gd8dbcja4qjwjh414mp2xf8hnjlrp4zm4ac8j59kqxzpwxv8n04"; depends=[dplyr ggplot2 glue gridExtra lubridate magrittr MASS polynom rlang scales stringr tibble vctrs xts zoo]; }; ggprism = derive2 { name="ggprism"; version="1.0.5"; sha256="0waivf6a6bk52z139xfg0apmcv0mhjqb08yb4dzv8g7g22qfwdbz"; depends=[digest ggplot2 glue gtable rlang scales tibble]; }; ggpubr = derive2 { name="ggpubr"; version="0.6.0"; sha256="0x7p3lbh0xv5qk0shsrj1fjx382zak7mj8l3z1zd348r2pccavif"; depends=[cowplot dplyr ggplot2 ggrepel ggsci ggsignif glue gridExtra magrittr polynom purrr rlang rstatix scales tibble tidyr]; }; ggpval = derive2 { name="ggpval"; version="0.2.5"; sha256="09wjfkmsh165xiw1dab6c8qb9wrnzm1q1sbfnbzyg99wsk480bgy"; depends=[data_table ggplot2]; }; @@ -10991,31 +11170,32 @@ in with self; { ggrisk = derive2 { name="ggrisk"; version="1.3"; sha256="02df3gcviax747d33v30m97jsazj7zdpjnhypfy38cg70yxidwg9"; depends=[cutoff do egg ggplot2 nomogramFormula reshape2 rms set survival]; }; ggrounded = derive2 { name="ggrounded"; version="0.0.3"; sha256="124khfv4fl3xgylq4s1pc3wzld0n68iclyl0pm19jcw97bmf1cxl"; depends=[ggplot2 gridGeometry]; }; ggroups = derive2 { name="ggroups"; version="2.1.2"; sha256="0fb6awfm4vn67pgmz50fljvp9mfxx1q29pirgv04dya8751srxgi"; depends=[]; }; - ggsankeyfier = derive2 { name="ggsankeyfier"; version="0.1.7"; sha256="1ddzjqcc4g6h8gryipa21gwjqza73cq2qchmh2pmm65mj1xip5k5"; depends=[dplyr ggplot2 gridBezier rlang scales tidyr vwline]; }; - ggsci = derive2 { name="ggsci"; version="3.0.2"; sha256="0qasxv3aliqqmfi3nk3140lrbcrw4lbfw5hm65hfkgf5a3bkca67"; depends=[ggplot2 scales]; }; - ggscidca = derive2 { name="ggscidca"; version="0.2.0"; sha256="0qfg7x0d75jyawarvja1pyzgq0blwy2l8bap3q8f5i2rjn4l8xld"; depends=[cmprsk ggplot2 randomForest reshape2 survival]; }; + ggsankeyfier = derive2 { name="ggsankeyfier"; version="0.1.8"; sha256="1sn7gpkqbgk3adkflnzak29d0zk57d0x6hlv2wm1shq45nawjmcg"; depends=[dplyr ggplot2 gridBezier rlang scales tidyr vwline]; }; + ggsci = derive2 { name="ggsci"; version="3.1.0"; sha256="1adybzfkmha5xi85yqnz8cbbr6r3qj86z6yvsfcz8g44wqrb4d2r"; depends=[ggplot2 scales]; }; + ggscidca = derive2 { name="ggscidca"; version="0.2.3"; sha256="1ggjakfafq6gib7yn684ssv6wdad68an0p13wxl232ikwmw4b66w"; depends=[cmprsk e1071 ggplot2 kernlab randomForest reshape2 survival]; }; ggseas = derive2 { name="ggseas"; version="0.5.4"; sha256="1jpdijwll5l7bg7cmjnklkxffysi9ckzg50rw2a2cd00zwby11q9"; depends=[ggplot2 rlang seasonal zoo]; }; ggsector = derive2 { name="ggsector"; version="1.6.6"; sha256="0qaf8wl1mmwl3razyif08sh329p9j1jgqc0ls5szqirq3db4315i"; depends=[dplyr ggplot2 magrittr Matrix prettydoc rlang Seurat tibble tidyr]; }; ggseg = derive2 { name="ggseg"; version="1.6.5"; sha256="0495g3l71lagrmz3s3lxy4rkfr7gin8vn1m59fvcv7hmycn39i0k"; depends=[dplyr ggplot2 sf tidyr vctrs]; }; ggseg3d = derive2 { name="ggseg3d"; version="1.6.3"; sha256="1rpq2wgyyladz5nkngkvbf3cy4pw212dj1vfh7ksh0bxi7v1k6mh"; depends=[dplyr magrittr plotly scales tidyr]; }; ggseqlogo = derive2 { name="ggseqlogo"; version="0.2"; sha256="1drncw73950dzjx3lyyfqrxm3rdbrp44n27sl4b17m9d0crdbgqw"; depends=[ggplot2]; }; - ggseqplot = derive2 { name="ggseqplot"; version="0.8.3"; sha256="1ml71lxkr1bnf0l0ljpnlj7rlfmgmk6zmydm899pwvgngph1rjq6"; depends=[colorspace dplyr forcats ggh4x ggplot2 ggrepel ggtext glue patchwork purrr Rdpack rlang tidyr TraMineR usethis]; }; + ggseqplot = derive2 { name="ggseqplot"; version="0.8.4"; sha256="0h4v5lxwr8rflxmxrv324axz6m1girib6gdh4p3k5hk48ilglwj0"; depends=[cli colorspace dplyr forcats ggh4x ggplot2 ggrepel ggtext glue haven patchwork purrr Rdpack rlang tidyr TraMineR usethis]; }; ggshadow = derive2 { name="ggshadow"; version="0.0.5"; sha256="0cakz31hp97kdvdcyrp9p03nz81kypsn9sn6nxl7kb0n3rrrlav0"; depends=[cli ggplot2 glue rlang scales vctrs]; }; ggside = derive2 { name="ggside"; version="0.3.1"; sha256="1r36hsnha9bqzfb3rhpj11zg307wzacnkn4i6hi627xrx4knj5cl"; depends=[cli ggplot2 glue gtable rlang scales tibble vctrs]; }; ggsignif = derive2 { name="ggsignif"; version="0.6.4"; sha256="02mjailzyqkdnzky60dgampw2sq6mnn7s66fk0lhy32s8apm280i"; depends=[ggplot2]; }; ggsoccer = derive2 { name="ggsoccer"; version="0.1.7"; sha256="13icxd9w3dfwpjl4yaw0gp09mviwf7xrrfs30z66nga459h6gf1d"; depends=[ggplot2 rlang]; }; ggsolvencyii = derive2 { name="ggsolvencyii"; version="0.1.2"; sha256="0jzj4iglgzwp6pfs5zr7mirdiqrrmbwdvl245b1fwf42rnxbqrq6"; depends=[dplyr ggplot2 magrittr tidyr]; }; ggsom = derive2 { name="ggsom"; version="0.4.0"; sha256="0qsih00rm3ng2zh6p2s7a35rh1qlvbkn82s53v765w60fjmhwkwf"; depends=[assertthat data_table dplyr entropy ggplot2 kohonen magrittr tibble tidyr]; }; + ggspark = derive2 { name="ggspark"; version="0.0.2"; sha256="09xdjiizx31sj8vahjdk12p7yhmxll8z61nirr13myj0wffrj79x"; depends=[ggplot2]; }; ggspatial = derive2 { name="ggspatial"; version="1.1.9"; sha256="14q3fc33cjy8vc85mb9a6h8fgciypnlcxjihbgc6jbzjksd0l38p"; depends=[abind ggplot2 glue rlang rosm scales sf tibble tidyr]; }; ggspectra = derive2 { name="ggspectra"; version="0.3.12"; sha256="0kq029w14w3z7qscrasxv289iizcxc7lvkbn5ysiz4jgrvgyc55g"; depends=[ggplot2 ggrepel lubridate photobiology photobiologyWavebands rlang scales tibble]; }; - ggstance = derive2 { name="ggstance"; version="0.3.6"; sha256="0wk3gbi5365sndi02gwd4c33vcrj5p8cfwakwjg010y5hgxx96nd"; depends=[cli ggplot2 plyr rlang withr]; }; + ggstance = derive2 { name="ggstance"; version="0.3.7"; sha256="0v25si348qdp68887yx4d652rsz8w5lfabwaq1nvglrhs6s4f9js"; depends=[cli ggplot2 plyr rlang withr]; }; ggstar = derive2 { name="ggstar"; version="1.0.4"; sha256="0m2knp1jf1x62nqd8ln4haw90jv69l7vjrhn4pdrywgmwhdrp8gd"; depends=[cli ggplot2 gridExtra scales]; }; - ggstats = derive2 { name="ggstats"; version="0.5.1"; sha256="1jcydapwarl1cxinm80rjmmli8vmlid8alnh6w484bh7nwzmcsic"; depends=[broom_helpers cli dplyr forcats ggplot2 lifecycle magrittr patchwork purrr rlang scales stringr tidyr]; }; - ggstatsplot = derive2 { name="ggstatsplot"; version="0.12.2"; sha256="0nriqsfk48ijkkg06i87zp2frp7yz3c4gfmfgfig6v8mcmj19zwr"; depends=[correlation datawizard dplyr ggcorrplot ggplot2 ggrepel ggside ggsignif glue insight paletteer parameters patchwork performance purrr rlang statsExpressions tidyr]; }; + ggstats = derive2 { name="ggstats"; version="0.6.0"; sha256="103d1d4azdiaf5i2dgr23wrx6svc0aq85axrfj0v2b2lkwial2pq"; depends=[broom_helpers cli dplyr forcats ggplot2 lifecycle magrittr patchwork purrr rlang scales stringr tidyr]; }; + ggstatsplot = derive2 { name="ggstatsplot"; version="0.12.3"; sha256="0lm48b664nin8f32a3xpqvc95cizi27sls5m4vrymfz3aarcwrxr"; depends=[correlation datawizard dplyr ggcorrplot ggplot2 ggrepel ggside ggsignif glue insight paletteer parameters patchwork performance purrr rlang statsExpressions tidyr]; }; ggstream = derive2 { name="ggstream"; version="0.1.0"; sha256="0d6g5916mfrg2srcqjhlpm4acp4g16vq9ks4x37yzkpr34vi5x7j"; depends=[dplyr forcats ggplot2 magrittr purrr tidyr]; }; ggstudent = derive2 { name="ggstudent"; version="0.1.1-1"; sha256="0qs27b4lksaaaspavkycbzf8cfjxjli7xrfjby71sl0lca3fwm1g"; depends=[dplyr ggplot2]; }; ggsurvey = derive2 { name="ggsurvey"; version="1.0.0"; sha256="1a50ac2546pxa35k59j4ih0csiyfjdgqfqwm3fb5ny7jx1mk0hmi"; depends=[dplyr ggplot2 hexbin survey]; }; - ggsurvfit = derive2 { name="ggsurvfit"; version="1.0.0"; sha256="1gb7plyg49zv1y2v1bwvk8afziqjr34d1ilwwiazls3pgcnm8si3"; depends=[broom cli dplyr ggplot2 glue gtable patchwork rlang survival tidyr]; }; + ggsurvfit = derive2 { name="ggsurvfit"; version="1.1.0"; sha256="0c3qv9gii3ndqip3nxs08bx7lvh6sm46mxz8nyi627zbgqmhwrr5"; depends=[broom cli dplyr ggplot2 glue gtable patchwork rlang survival tidyr]; }; ggswissmaps = derive2 { name="ggswissmaps"; version="0.1.1"; sha256="0is48x6k2p5dgj9q4km0dv33a9pcpfhlai9vz295y3acpyrkmnn4"; depends=[ggplot2]; }; ggtea = derive2 { name="ggtea"; version="0.1.1"; sha256="04g8g17ziw13rxjzkvgy5yd0z15ypxk0b8fq2y1vk8acsqr2dv11"; depends=[ggplot2]; }; ggtern = derive2 { name="ggtern"; version="3.5.0"; sha256="0ymly9vdzk7rd4p27m1262bm7fvim989yswgw3mr9y0422dn8awa"; depends=[compositions ggplot2 gridExtra gtable hexbin latex2exp lattice MASS plyr proto rlang scales]; }; @@ -11023,6 +11203,7 @@ in with self; { ggthemeUL = derive2 { name="ggthemeUL"; version="0.1.3"; sha256="0nv11db6ds7xshh7dkpz1agfq0r8a9z3qvgd3m1icqcg3w60as0y"; depends=[ggplot2]; }; ggthemes = derive2 { name="ggthemes"; version="5.1.0"; sha256="03mxigi34nd05wjigm8lpcbyhp4c8jxz7zm04qs27clbzsn1jj07"; depends=[ggplot2 lifecycle purrr scales stringr tibble]; }; ggtibble = derive2 { name="ggtibble"; version="1.0.0"; sha256="0mqwcy5gyb2dwnpkjzkyg9b3jy6jh9ck1h8z9ghvfssr2mkd17zz"; depends=[dplyr ggplot2 glue knitr purrr rlang tibble tidyr vctrs]; }; + ggtikz = derive2 { name="ggtikz"; version="0.1.3"; sha256="07af96qx8n4mal4jnnn8br3gf7bw22mk82c24csvqhki6q5w460z"; depends=[dplyr ggplot2 stringr tikzDevice]; }; ggtrace = derive2 { name="ggtrace"; version="0.2.0"; sha256="1zzdamzxkwimzjhrjf5nijj0r94l03nabny5gjv49kqlncjicr7r"; depends=[ggplot2 rlang]; }; ggtrendline = derive2 { name="ggtrendline"; version="1.0.3"; sha256="10ml5mdijh27b1js67zwaywn81bvz6aja1bn60k3rnr964nsljsj"; depends=[ggplot2]; }; ggtricks = derive2 { name="ggtricks"; version="0.1.0"; sha256="1bpf3a5da8csqzwyqw0xqkbki4jgyhsybj2lw8zs00vcdsg9bhhv"; depends=[cli ggplot2]; }; @@ -11030,32 +11211,32 @@ in with self; { ggvenn = derive2 { name="ggvenn"; version="0.1.10"; sha256="0gl7z8hrn2wmmb59fvfv2hsw40p629aj086dv0kwlv162zqidqfd"; depends=[dplyr ggplot2]; }; ggversa = derive2 { name="ggversa"; version="0.0.1"; sha256="0xqn8iznrm8q30pxwka88wi1z7lndi6lm12rq6ngcaxf294fbz01"; depends=[]; }; ggvis = derive2 { name="ggvis"; version="0.4.9"; sha256="0bx1bg19l8nfwzwhnn2jn0b0lwcb781l6v9k5zfsx44wg22d3fb9"; depends=[assertthat dplyr htmltools jsonlite magrittr rlang shiny]; }; - ggwordcloud = derive2 { name="ggwordcloud"; version="0.6.1"; sha256="1fbxpvylz0b911a4xg0ywqsgryfrshxlp18fvjg53xplxw1brfxp"; depends=[colorspace ggplot2 gridtext png Rcpp scales]; }; + ggwordcloud = derive2 { name="ggwordcloud"; version="0.6.2"; sha256="0zl50rksfxiw3ab1j26w27rypygrr28yysflg507djamnc2371gj"; depends=[colorspace ggplot2 gridtext png Rcpp scales]; }; ggx = derive2 { name="ggx"; version="0.1.1"; sha256="13yvckny2b7b7rhgi28xm8379paskin78wm5095s1ily9a2dxgkg"; depends=[ggplot2 sets]; }; - gh = derive2 { name="gh"; version="1.4.0"; sha256="0wcbnnws472v1i6q012pbdxjpsd4clj6a2cscf73g6s2336rzik8"; depends=[cli gitcreds httr2 ini jsonlite rlang]; }; + gh = derive2 { name="gh"; version="1.4.1"; sha256="1bwj8a2lfansyfx7fiwx2nv8yzhg1fi9ja1n6fk7dbzf64m3zgbn"; depends=[cli gitcreds glue httr2 ini jsonlite lifecycle rlang]; }; ghapps = derive2 { name="ghapps"; version="1.0.0"; sha256="12z234lc7iy8svnm37ybj9ym0zd3jq5q9fng9h7dxdw2p9id7y30"; depends=[gh jose openssl]; }; - ghclass = derive2 { name="ghclass"; version="0.2.1"; sha256="0jpfc2mjwi6i3bcrfjjl6k4im4m110pq2n00mij2n9czz6v2chla"; depends=[base64enc cli dplyr fs gh glue httr lubridate purrr rlang tibble whisker withr]; }; + ghclass = derive2 { name="ghclass"; version="0.3.0"; sha256="10sq9rissf3w7rp8449vzigl7bj7y3iqx0vci2m559ihjmsdkn6i"; depends=[base64enc cli dplyr fs gh glue httr lifecycle lubridate purrr rlang tibble whisker withr]; }; ghcm = derive2 { name="ghcm"; version="3.0.1"; sha256="18cp82bniz1mdrkfi6y6mrrjxz5jhkz4w21939c5wsz9mlp9d2bj"; depends=[CompQuadForm Rcpp]; }; ghibli = derive2 { name="ghibli"; version="0.3.4"; sha256="1qj5cysgbh9hq7q17p3vvaqychg3cyhyzlv1hs4jqqlb9z2cz1gr"; depends=[prismatic]; }; ghql = derive2 { name="ghql"; version="0.1.0"; sha256="19awg98r2hwwwwrwh0166y8ij1clf58vrf02i8fhhfzddx3an6bz"; depends=[crul graphql jsonlite R6]; }; ghyp = derive2 { name="ghyp"; version="1.6.4"; sha256="0964gr8hmqrbg7rwm4hplxfqz2iccpir1dchmnqidkjqj8p9yy1d"; depends=[MASS numDeriv]; }; ghypernet = derive2 { name="ghypernet"; version="1.1.0"; sha256="0k4w37vnhpanpa80la8rscgimnnzzid5v59109xfbbz1xxx1bb49"; depends=[dplyr extraDistr numbers pbmcapply plyr purrr reshape2 rlang rootSolve texreg]; }; - giacR = derive2 { name="giacR"; version="1.0.0"; sha256="12a6cj93id0x1xz39bcg52v7g1d9yd7k2nz2wiiljw2xgbirjjqz"; depends=[chromote jsonlite pingr processx R6]; }; + giacR = derive2 { name="giacR"; version="1.0.1"; sha256="0y7vcca2im6q70jxsjnf4a7jg66y66g941ad0d7iykw3c2cwx6g4"; depends=[chromote jsonlite pingr processx R6]; }; gibasa = derive2 { name="gibasa"; version="1.1.0"; sha256="1biy8vqvbc3mbf2p8kffpifdagyv7k5p28kdwyp9hgp996lj5pqk"; depends=[dplyr Matrix purrr Rcpp RcppParallel readr rlang stringi]; }; gibble = derive2 { name="gibble"; version="0.4.0"; sha256="19il4si7ch5jr7plr8qwv7jrc5kfkxmh5jrcdvbn688gxcnv7bs0"; depends=[dplyr rlang tibble]; }; - gie = derive2 { name="gie"; version="0.1.1"; sha256="1r3limgw4mql9zjsc085shbds7gdr1zlcwphxk96chmzsc693sdr"; depends=[curl dplyr httr lubridate magrittr purrr stringr]; }; + gie = derive2 { name="gie"; version="0.1.2"; sha256="0dgzmlza4mxghs3f9d81p03f91bz7v07af1d6zpfmaif3lzc2q77"; depends=[curl dplyr httr lubridate magrittr purrr stringr]; }; gif = derive2 { name="gif"; version="0.1.1"; sha256="1gh6h3cxf27x6wa3g28fi8famb1vvf69qgq8qw3ypdamc58avmp9"; depends=[MASS Matrix Rcpp RcppEigen]; }; gifski = derive2 { name="gifski"; version="1.12.0-2"; sha256="0ybv0fm4p23zfxnyjj97bym09r4brg9z26298ibxzl58j6r624r8"; depends=[]; }; gifti = derive2 { name="gifti"; version="0.8.0"; sha256="1gb3x4rln9vayjd9fgzb434mm3dwcqgrvlv6rmh4b39mjfm73sly"; depends=[base64enc R_utils xml2]; }; gigg = derive2 { name="gigg"; version="0.2.1"; sha256="0qb8w455a8wxc5ljmydq4xag2kbj5yk06an0pd9hd4k48wssg8la"; depends=[BH Rcpp RcppArmadillo]; }; gim = derive2 { name="gim"; version="0.33.1"; sha256="1km8pyr1qfzffm33ihhlgvc0qxgxxfi161vkrz77d1b7jkpdyxjj"; depends=[numDeriv]; }; - gimme = derive2 { name="gimme"; version="0.7-16"; sha256="0vimpnzvls4344wpx28iv2p91vsv74nkl0wwwgfnz6l5nfywdrqa"; depends=[data_tree igraph imputeTS lavaan MASS MIIVsem nloptr qgraph tseries]; }; + gimme = derive2 { name="gimme"; version="0.7-17"; sha256="0pa0mag0w7gxx4ikqs3c3k8g3ppi1fz3qkxmq2vmd48k7fyy7n0x"; depends=[data_tree igraph imputeTS lavaan MASS MIIVsem nloptr qgraph tseries]; }; gimmeTools = derive2 { name="gimmeTools"; version="0.1"; sha256="1g170rz3c3qx27yy67f7xab4gkm0pbbvwlwkcsczfxphad609ryl"; depends=[easycsv magrittr miniUI rhandsontable rintrojs rstudioapi shiny shinyjs shinyWidgets]; }; gimms = derive2 { name="gimms"; version="1.2.2"; sha256="0dhvi05mpwyx6cpcyk2nzvgd6c8byd7cmrd9crx83lvfa03smpng"; depends=[curl Kendall ncdf4 raster zyp]; }; giniVarCI = derive2 { name="giniVarCI"; version="0.0.1-3"; sha256="1yv97q6l8imd7z8zqykymmsx6905wrygj5l3arwdz9irfgvw55lx"; depends=[Rcpp]; }; ginormal = derive2 { name="ginormal"; version="0.0.2"; sha256="0b37np2h03m82dhww9slnchm3dk4qwfmj6v7q13li788cw7whid1"; depends=[BAS]; }; gips = derive2 { name="gips"; version="1.2.1"; sha256="0mvjgzqy3sqa5p1263v042k20j6hmlgli9llgq89y17d47njmfw4"; depends=[numbers permutations rlang]; }; - giscoR = derive2 { name="giscoR"; version="0.4.1"; sha256="00hszk0pnf5i65sp12073gq1bfybpaazdigs6q5j0gyvaqcacbl9"; depends=[countrycode geojsonsf rappdirs sf]; }; + giscoR = derive2 { name="giscoR"; version="0.5.0"; sha256="1cqc2mn4f6g18vb8cng0l11w1glyxk3k6sqsdzla0vbwlxs9d5z0"; depends=[countrycode geojsonsf jsonlite rappdirs sf]; }; gistr = derive2 { name="gistr"; version="0.9.0"; sha256="0ac9ikrdg6i8xvlma0gizvsdva46408lk7hvsgkqirhy2ljy02hp"; depends=[assertthat crul dplyr httr jsonlite knitr magrittr rmarkdown]; }; git2r = derive2 { name="git2r"; version="0.33.0"; sha256="158q1rzh9j0xb6l09j6banzvx8l26bhvip2z4lf6ymi21s6vcm8q"; depends=[]; }; git2rdata = derive2 { name="git2rdata"; version="0.4.0"; sha256="05hr4ks2rdnjhbd5v865r9h6gnw149n5h6nwilw5xfx00gj86b9d"; depends=[assertthat git2r yaml]; }; @@ -11068,7 +11249,7 @@ in with self; { githubinstall = derive2 { name="githubinstall"; version="0.2.2"; sha256="0hqh86r2007hzdbm8rr0fwqhhsna7ji8sdgmdnrxkxraa5f2pfz3"; depends=[curl data_table devtools httr jsonlite mockery]; }; githubr = derive2 { name="githubr"; version="0.9.1"; sha256="1h3yaz2snrlibl707rnv2l5y5r879dsprcr0a0vc8aliwdsmydvi"; depends=[dplyr gh gitcreds httr magrittr]; }; gitignore = derive2 { name="gitignore"; version="0.1.6"; sha256="1cjfqbch614w75lxc8pw44aryxgcswbhydd48q10ch128x2gvw5a"; depends=[clipr clisymbols crayon curl glue here jsonlite purrr xfun]; }; - gitlabr = derive2 { name="gitlabr"; version="2.0.1"; sha256="0h3md21ir0nw9n17y6sg8y7l4z2lk5f5bvz4q6v3cs7jn734imwb"; depends=[arpr base64enc dplyr httr magrittr purrr shiny stringr tibble]; }; + gitlabr = derive2 { name="gitlabr"; version="2.1.0"; sha256="1mlzg17pvbxgq8n09lajsb4qyfyl4ksyn7c2v5vlda94brvgspkd"; depends=[arpr base64enc dplyr httr magrittr purrr stringr tibble tidyr]; }; gitlink = derive2 { name="gitlink"; version="0.1.3"; sha256="1g34cyx35wlpq42alsayk69x708zxqgvbdndb7j6n1q0rm4vncvd"; depends=[htmltools rlang]; }; gitr = derive2 { name="gitr"; version="0.0.1"; sha256="09l22wv2r7l1ax17y1q1xmasibyqm71jk0nyvmvlawavkw6by658"; depends=[]; }; gittargets = derive2 { name="gittargets"; version="0.0.7"; sha256="0kgr3rcy261zlsc4a5sqvar6kwb23wcfdwv2rpjcfwdvghz3afzc"; depends=[callr cli data_table gert processx targets tibble uuid]; }; @@ -11078,7 +11259,6 @@ in with self; { gkgraphR = derive2 { name="gkgraphR"; version="1.0.2"; sha256="1sb52hhpwm3bq7rn2xdq5vly6z1c5yab9a26xzgj3c5s47vk02pa"; depends=[httr ISOcodes jsonlite]; }; gkmSVM = derive2 { name="gkmSVM"; version="0.83.0"; sha256="1bg9jw4ra76j132lkr0p5m2xlr952fdij1hn6f1v7g687l55m0k5"; depends=[kernlab Rcpp ROCR seqinr]; }; glamlasso = derive2 { name="glamlasso"; version="3.0.1"; sha256="0vzkszam7nz40v8pxq06jn3fgwa1nd3s485hgfkcv7r8pg2rp56q"; depends=[Rcpp RcppArmadillo]; }; - glancedata = derive2 { name="glancedata"; version="1.0.1"; sha256="01j7syjn33pc7hq032nmyak38wn35yv3n7is9g2ggs14kj3xqb0c"; depends=[dplyr forcats GGally ggplot2 gridExtra openxlsx purrr tibble tidyr]; }; glarma = derive2 { name="glarma"; version="1.6-0"; sha256="0n0mv4xvh5q3y383cs224x6r608ciw4822pkanvmcjsc9zl0z1ar"; depends=[MASS]; }; glassdoor = derive2 { name="glassdoor"; version="0.8.1"; sha256="0r85k1fyk8979ahfmd4vmzkhyvrlnpkgjwg1yi7092kpx8877lj0"; depends=[httr]; }; glasso = derive2 { name="glasso"; version="1.11"; sha256="02p3612rpydk195n2qr77lp1j2w8zsw1ckkk98c8angm4r5q8dsc"; depends=[]; }; @@ -11089,12 +11269,13 @@ in with self; { gld = derive2 { name="gld"; version="2.6.6"; sha256="1i7xpyxd7r1fkjy9zkzd3rfsnb35v5c5fkafs1zd9d8729wfj8za"; depends=[e1071 lmom]; }; gldrm = derive2 { name="gldrm"; version="1.6"; sha256="02xgkrh2wybf9prcrb55w5ingf6x8f5xzdcnh2fv4skr0ixn0gp8"; depends=[]; }; glinternet = derive2 { name="glinternet"; version="1.0.12"; sha256="0aphdscj0s6kqxlkgqkw2d6snrylz6hiis6307pl8ldh7q5cvm33"; depends=[]; }; - glinvci = derive2 { name="glinvci"; version="1.2.2"; sha256="0h8fv30gv4807yflymrla0hiy56sxvdm1530k1ag0gbq067i1sz8"; depends=[ape BB generics lbfgsb3c numDeriv optimx plyr rlang]; }; + glinvci = derive2 { name="glinvci"; version="1.2.4"; sha256="050rpdyp3xawkyjxcimjpbvn24677whlfhfmkyxijz7zqnvl7i8p"; depends=[ape BB generics lbfgsb3c numDeriv optimx plyr rlang]; }; gllm = derive2 { name="gllm"; version="0.38"; sha256="06sq7yk11rbqj8i900ss987fg9b232cirjxhdm1yl9xqz4inxvlg"; depends=[]; }; gllvm = derive2 { name="gllvm"; version="1.4.3"; sha256="1k3yw1flqzj151kqx8wyh54a7crh62ya700x5n4989ngx5071dv3"; depends=[alabama fishMod MASS Matrix mgcv mvabund nloptr RcppEigen statmod TMB]; }; glm_deploy = derive2 { name="glm.deploy"; version="1.0.4"; sha256="1akklvbhz2pp0sv1hax1jq0s9ajbfv1597z643gh5l9hwizj2h9m"; depends=[Rcpp]; }; glm_predict = derive2 { name="glm.predict"; version="4.3-0"; sha256="18cs6z6573vq8sdjb4kgz8kahizs9njdbip4cm1dk63ldjjrl0kf"; depends=[AER dfidx lme4 MASS mlogit nnet survey survival VGAM]; }; glm2 = derive2 { name="glm2"; version="1.2.1"; sha256="1byqlvpls23gzy7xlbs1kgfr4bsrmsrpc8rzzacf9czap1nlw39y"; depends=[]; }; + glmMisrep = derive2 { name="glmMisrep"; version="0.1.1"; sha256="0ymcgn42r3n6fhfp7rmkz033bmnqdshx71957zvbrmxjphkmr37b"; depends=[MASS poisson_glm_mix]; }; glmbb = derive2 { name="glmbb"; version="0.5-1"; sha256="1jy77z5fr781rm5mx6kszwi2zlvnpfwi24fn9vw1kza4jzcw9pjw"; depends=[digest]; }; glmc = derive2 { name="glmc"; version="0.3-1"; sha256="0x6jk2l5rpjkp5x815gpiwv8maa7mhmy6m8gaxbv1cbn3zyccynn"; depends=[emplik]; }; glme = derive2 { name="glme"; version="0.1.0"; sha256="1ysg1yx0pdyxlbkn36023230yky8wj3rvi3skrdqdjbnnyzhn49b"; depends=[dplyr nlme reshape]; }; @@ -11102,7 +11283,7 @@ in with self; { glmglrt = derive2 { name="glmglrt"; version="0.2.2"; sha256="1954ywshnqzr7h77wshf63y3zx3ra8mrfabg5dqjhkgv4rsk3h1y"; depends=[MASS parameters]; }; glmlep = derive2 { name="glmlep"; version="0.2"; sha256="0rq2vxbr732r725pn8qdvppxcrhjhyvlr550svfgy1inq985c1w4"; depends=[]; }; glmm = derive2 { name="glmm"; version="1.4.4"; sha256="0v8iill3503piyx3wjxd602hs6hgz9818ipqlvg34963hh4b4ixi"; depends=[doParallel foreach itertools Matrix mvtnorm trust]; }; - glmm_hp = derive2 { name="glmm.hp"; version="0.1-2"; sha256="14sp54h6lrn4bfi4n3ilp9asz442lcvy72yhcp5pjyynld2wm3c5"; depends=[ggplot2 lme4 MuMIn vegan]; }; + glmm_hp = derive2 { name="glmm.hp"; version="0.1-3"; sha256="07pqwgqdr2a1mxzh7sca6n0cklic4mmyp3vr6yk0485780ysh0wy"; depends=[ggplot2 lme4 MuMIn vegan]; }; glmmEP = derive2 { name="glmmEP"; version="1.0-3.1"; sha256="0fql85m0mxn58jh3mgrcw56bb4dx7amrz39ngqrljwi5pv5i7aj4"; depends=[lme4 matrixcalc]; }; glmmLasso = derive2 { name="glmmLasso"; version="1.6.3"; sha256="1b2wkmsmnhmkql0kin56faf64abc6hijrs6dlz8qvwcbqpgbpcig"; depends=[Matrix minqa Rcpp RcppEigen]; }; glmmML = derive2 { name="glmmML"; version="1.1.6"; sha256="0n3r1cpz7rgiighykbjfw1k5s1xgr1vdli960hmaadyy61jza417"; depends=[]; }; @@ -11110,19 +11291,19 @@ in with self; { glmmSeq = derive2 { name="glmmSeq"; version="0.5.5"; sha256="182pgwqqbgpkcvapkps7ahxa4ppic44j10081q0v9lp2cjdiv4qy"; depends=[car ggplot2 ggpubr glmmTMB lme4 lmerTest MASS pbapply pbmcapply plotly qvalue]; }; glmmTMB = derive2 { name="glmmTMB"; version="1.1.9"; sha256="0qw9ww3l506vivs6k8v5cdiv6lf9a32f0d1iq6bizxxh0ywsdmck"; depends=[lme4 Matrix mgcv nlme numDeriv RcppEigen TMB]; }; glmmfields = derive2 { name="glmmfields"; version="0.1.8"; sha256="0nn328dn7fbh3h0wnl4kahwrbq9ddr3hyqq7930raa0abimg8ykq"; depends=[assertthat BH broom broom_mixed cluster dplyr forcats ggplot2 loo mvtnorm nlme Rcpp RcppEigen RcppParallel reshape2 rstan rstantools StanHeaders tibble]; }; - glmmrBase = derive2 { name="glmmrBase"; version="0.7.1"; sha256="1g4hs75z5z5wp2jkwvpigyqc0lzmj47jasbiv4pjxvfmipj8mz3b"; depends=[BH Matrix R6 Rcpp RcppEigen RcppParallel rstan rstantools SparseChol StanHeaders]; }; - glmmrOptim = derive2 { name="glmmrOptim"; version="0.3.4"; sha256="0z3l7z6zvqf1ykb60crli30h2iaykdbzzbx1kmf86axp05d2rfbh"; depends=[BH digest glmmrBase Matrix Rcpp RcppEigen RcppProgress rminqa SparseChol]; }; + glmmrBase = derive2 { name="glmmrBase"; version="0.8.1"; sha256="1dam3dp32s3ybb656sfczba9vlan6bsd9n8x73p4faikfpjgyysb"; depends=[BH Matrix R6 Rcpp RcppEigen RcppParallel rstan rstantools SparseChol StanHeaders]; }; + glmmrOptim = derive2 { name="glmmrOptim"; version="0.3.5"; sha256="0aic2wc1f1qdj2g9g7zsaz4hckrgpy7w293harpjmq9ll3gxpfcz"; depends=[BH digest glmmrBase Matrix Rcpp RcppEigen RcppProgress rminqa SparseChol]; }; glmnet = derive2 { name="glmnet"; version="4.1-8"; sha256="1znw1p1mi7nv39l7albcg6sfxj7a1jyjw85hb3ginv870z7fbnqx"; depends=[foreach Matrix Rcpp RcppEigen shape survival]; }; glmnetSE = derive2 { name="glmnetSE"; version="0.0.1"; sha256="0qj3c8qrx3vl0dr9prravfjwzqv1yfi771xfss9d44wlvjz5f4gp"; depends=[boot glmnet]; }; glmnetUtils = derive2 { name="glmnetUtils"; version="1.1.9"; sha256="0rh07i9j6bxiqcl84d8jnn7dzqdwfdzak7w8bf4j4521r24mwm01"; depends=[glmnet Matrix]; }; glmnetcr = derive2 { name="glmnetcr"; version="1.0.6"; sha256="0cs0yj2js0920iggcw2vci5y9hnsm3hd7wpd7mwnx8mszwrklawg"; depends=[glmnet]; }; - glmnetr = derive2 { name="glmnetr"; version="0.4-4"; sha256="0z4yr54w3ykpj6x1da5mdics06rs4fb4i0zbq63wr4imkjvmph5x"; depends=[glmnet Matrix mlrMBO ParamHelpers randomForestSRC rpart smoof survival torch xgboost]; }; + glmnetr = derive2 { name="glmnetr"; version="0.5-1"; sha256="03jinkwfz8v7cbp0jj4hhr7sgn71giqin3bxs80hary4vx79vwsy"; depends=[aorsf DiceKriging glmnet Matrix mlrMBO ParamHelpers randomForestSRC rgenoud rpart smoof survival torch xgboost]; }; glmpath = derive2 { name="glmpath"; version="0.98"; sha256="1jbiqqd1s93i941dhyyx50zlgwavhyjfw8bx13z4gz05rdvi4gn8"; depends=[survival]; }; glmpathcr = derive2 { name="glmpathcr"; version="1.0.10"; sha256="03kjj1wcx8p2jcdqb70fsdz2ljiz37xaaahqadawr3vjs7x441q3"; depends=[glmpath]; }; glmpca = derive2 { name="glmpca"; version="0.2.0"; sha256="02xjf0gg52925hw9nw2j0znfmzfzfwbv0fxjl9d2fy9j63drr2h4"; depends=[MASS]; }; glmpermu = derive2 { name="glmpermu"; version="0.0.1"; sha256="09jm71izzdj4bhhd3fmcxjwc1b6q9qhbynx9bzm1g18zwr8kck7k"; depends=[]; }; glmtlp = derive2 { name="glmtlp"; version="2.0.1"; sha256="0ax3jhbib75gzp5a2y4nj80qss4qmn65rra8bsnkmwgcn4qg8xja"; depends=[doParallel foreach ggplot2]; }; - glmtoolbox = derive2 { name="glmtoolbox"; version="0.1.10"; sha256="0xkjz6y4dfnickcnb584xh3z3jrjclji6fsal2si70203n09p2gs"; depends=[Formula MASS numDeriv Rfast statmod SuppDists]; }; + glmtoolbox = derive2 { name="glmtoolbox"; version="0.1.11"; sha256="1d7nc2yr01wp2gjd6jx5i51z3vx5ppc625159l1rxp630d0xxq8f"; depends=[Formula MASS numDeriv Rfast statmod SuppDists]; }; glmtrans = derive2 { name="glmtrans"; version="2.0.0"; sha256="10d9z1rrjnxkw3nmim01ql5yfn1w62sncgclmprznr5kbna49yj3"; depends=[assertthat caret doParallel foreach formatR ggplot2 glmnet]; }; glmtree = derive2 { name="glmtree"; version="0.3.1"; sha256="0d0i9qhmib0rr15jm9kwl9jcfwhsagdr56jqgan5sr0hb4wbzzvw"; depends=[caret dplyr magrittr partykit]; }; glmulti = derive2 { name="glmulti"; version="1.0.8"; sha256="0zviahj99645s1xs2f9z7rnv95x4rdz7mfwzy3qjfw46yqpfj5cn"; depends=[leaps rJava]; }; @@ -11137,7 +11318,7 @@ in with self; { glober = derive2 { name="glober"; version="1.0"; sha256="05syd93995pcvzvrwd8hchs2dgklv627a7pias806vsbs8xbp2vg"; depends=[fda genlasso ggplot2 Matrix plot3D]; }; glogis = derive2 { name="glogis"; version="1.0-2"; sha256="15zk11p10v8fmqvmg9gdhxa0h6s5axvmdkxkpwrg8sgp2ln94fr9"; depends=[sandwich zoo]; }; glossary = derive2 { name="glossary"; version="1.0.0"; sha256="0p3sn30gpi1zbh498iv08n55sjpls0120cxcg9dkz0yjs60y2snl"; depends=[kableExtra knitr markdown rvest xml2 yaml]; }; - glossr = derive2 { name="glossr"; version="0.7.0"; sha256="1wh6gryarmlv1b8ca12h81m94wjlr0kkjr2ydlrwdyzr2cxhxav5"; depends=[cli dplyr flextable knitr magrittr purrr rlang stringr tibble tidyr]; }; + glossr = derive2 { name="glossr"; version="0.8.0"; sha256="1ip7s2whnid0ycdd554ncyvnazd2g7zmv16qfgfhjb0iy8ny3mc0"; depends=[cli dplyr knitr purrr rlang systemfonts tibble yaml]; }; glottospace = derive2 { name="glottospace"; version="0.0.112"; sha256="1bgyxki16mh38pw1476hq9f9r2899vs6ax7dsyrn1xzcad6x91y3"; depends=[dplyr ggplot2 magrittr purrr readxl rlang rnaturalearth rnaturalearthdata sf tibble tidyr tmap units writexl]; }; glow = derive2 { name="glow"; version="0.11.0"; sha256="1q8zci8jv71xzcxsg9b0h04mx11ykpsh4lnvkgg74zfsrf3sib0f"; depends=[ggplot2 R6 Rcpp RcppEigen RcppParallel]; }; glpkAPI = derive2 { name="glpkAPI"; version="1.3.4"; sha256="1cr40jksm27h0j1j0q1ngcf4cbrhrjz48m6z3c3jns8h17h8g8qh"; depends=[]; }; @@ -11163,6 +11344,7 @@ in with self; { gmpoly = derive2 { name="gmpoly"; version="1.1.0"; sha256="0rlmwlxyg9b8gqyrc7mbqv7x86v9pqj51pd847raq7x1smjnz1kg"; depends=[english gmp mvp purrr]; }; gms = derive2 { name="gms"; version="0.4.0"; sha256="1m7bhy4vsz6l09pal9ibjlskmbyjmc29hqwjim1x8yansd5bxpzv"; depends=[dplyr rlang stringr yaml]; }; gmt = derive2 { name="gmt"; version="2.0.3"; sha256="1clnhwxn1z1iyzx9ps9rkfv2xqdyqc73mcc77ysmlg5cncvm1hac"; depends=[]; }; + gmtFD = derive2 { name="gmtFD"; version="0.1.0"; sha256="0qayzxy2aqikndcmk25m26cjxdqf62d4pdk9aiclhw4acvq9awvz"; depends=[doParallel fda foreach GFDmcv MASS Matrix Rcpp RcppArmadillo]; }; gmvarkit = derive2 { name="gmvarkit"; version="2.1.2"; sha256="06w822gq2zigynzmqndd3wilqyh1clbx2a52c9x5mg9km4pp95mb"; depends=[Brobdingnag gsl mvnfast pbapply]; }; gmvjoint = derive2 { name="gmvjoint"; version="0.4.0"; sha256="1gycj6b51irzkv2rg6vvlanaiar8z54pqwd9qswlrw48wk2q074w"; depends=[glmmTMB MASS mvtnorm pracma Rcpp RcppArmadillo statmod survival xtable]; }; gmwmx = derive2 { name="gmwmx"; version="1.0.3"; sha256="1jp3jjg0znvqmir83ygvi1nnws6xs29cfccd79vbk8702k4i9y61"; depends=[fs longmemo ltsa Matrix Rcpp RcppArmadillo rjson stringi wv]; }; @@ -11177,10 +11359,10 @@ in with self; { gnumeric = derive2 { name="gnumeric"; version="0.7-10"; sha256="0x8w35wj81yx7ri2jvkafkmg8d68il6m5fl6gh97g9rg5w0xkz7n"; depends=[XML]; }; go2bigq = derive2 { name="go2bigq"; version="2.0.1"; sha256="0xz6im5gc214m11w70m83mnas09sql9i0lvbgyfy0qvizn6zhyl3"; depends=[gmp Rmpfr]; }; goalp = derive2 { name="goalp"; version="0.3.1"; sha256="1xr9bgizzsjr4nn41q1zi049wg9cw6qril60bri96x0xgc00qdpz"; depends=[lpSolve]; }; - goeveg = derive2 { name="goeveg"; version="0.7.4"; sha256="0ckklmjbyfyz2ng9rz5aiy7c6klw1gb1sqs826x2q2rbbbwy96cx"; depends=[fields Hmisc mgcv vegan]; }; + goat = derive2 { name="goat"; version="1.0"; sha256="154x643dlh614nasx8q77rksp0q9n19a6qnmc5gki0pxv6ysgyj6"; depends=[data_table dplyr ggplot2 ggraph igraph Matrix MonoPoly pheatmap Rcpp readxl tibble tidyr tidyselect treemap vctrs writexl]; }; + goeveg = derive2 { name="goeveg"; version="0.7.5"; sha256="1pdbl044xjganm8y7jg3j877bj1rinsr6k22b5b8ngm2gbdmril3"; depends=[fields Hmisc mgcv vegan]; }; gofCopula = derive2 { name="gofCopula"; version="0.4-1"; sha256="17bdrn8xsqjz64caa5wdigkv798i18gc2f9jiin1bz840bqn1abg"; depends=[copula crayon doSNOW foreach MASS numDeriv progress R_utils SparseGrid VineCopula yarrr]; }; gofar = derive2 { name="gofar"; version="0.1"; sha256="10c1qgmkdhzxk9m2sd0xxww453y9lf5vjsrbmrbzbln91i6svy8j"; depends=[glmnet magrittr MASS Rcpp RcppArmadillo rrpack]; }; - gofastr = derive2 { name="gofastr"; version="0.3.0"; sha256="02jn4xbbafl7siwvkqns1818wmw813x9cvqfcnpnmcippiqhrb0b"; depends=[data_table quanteda slam SnowballC tm]; }; gofcat = derive2 { name="gofcat"; version="0.1.2"; sha256="0jkkavws3p336i3gzlkd24q467zd1clfndcpimwc6scy8zh67q9l"; depends=[crayon epiR Matrix reshape stringr VGAM]; }; gofedf = derive2 { name="gofedf"; version="0.1.0"; sha256="12y6lhrpldj46adn3a7jz4snx79y9xdrzbgr5qa4gjl00w3nx6cn"; depends=[CompQuadForm glm2 MASS statmod]; }; goffda = derive2 { name="goffda"; version="0.1.2"; sha256="0d4w2rz7024j4vky1nynqfanfgp8rvgivl2p6b8l2ws98brlhy24"; depends=[fda_usc glmnet ks Rcpp RcppArmadillo]; }; @@ -11188,15 +11370,15 @@ in with self; { goft = derive2 { name="goft"; version="1.3.6"; sha256="0ag1bks44hm787sgbab70ab9q0dzbfsx70ldprafjx92gg1cqv5s"; depends=[fitdistrplus sn]; }; goftest = derive2 { name="goftest"; version="1.2-3"; sha256="06bz6k7smr4jbvzmb73qc5fkf4my59w5gbl18wlmpkkymsv78prs"; depends=[]; }; gogarch = derive2 { name="gogarch"; version="0.7-5"; sha256="01ikd7ngzgyrgkr637cxnj5xqmdmsj6szcr9f8wmrxvly0b3qf1i"; depends=[fastICA fGarch]; }; - goldfish = derive2 { name="goldfish"; version="1.6.4"; sha256="1syv7flh18cm1ypz0fj91qnjkc7zlzj4rkrj4cxag231jbqgzyd1"; depends=[changepoint generics ggplot2 Rcpp RcppArmadillo tibble]; }; + goldfish = derive2 { name="goldfish"; version="1.6.8"; sha256="1c49xmn29c1qvx2rmhyvwy5ql2b4zsk4chrv8bni6lwiprib5d9q"; depends=[changepoint generics ggplot2 Rcpp RcppArmadillo rlang tibble]; }; golem = derive2 { name="golem"; version="0.4.1"; sha256="0pcvp2rmwzvl0wi73fp9pmjq1rrknq2h45sfvbjhmbz8ilvr8zpa"; depends=[attempt config here htmltools rlang shiny yaml]; }; gomms = derive2 { name="gomms"; version="1.0"; sha256="1i9d5y28wrhal990x7xxy99v3z9y2pzlakj7wnynd3dpx5pqr0jj"; depends=[]; }; gompertztrunc = derive2 { name="gompertztrunc"; version="0.1.2"; sha256="0m1xnjn5fm3s475gjqpkdc589z3qbplzjd4f8ay3sy38pg8j48gz"; depends=[broom cowplot data_table dplyr flexsurv ggplot2 ggsci magrittr modelr rlang stringr tibble tidyr]; }; gontr = derive2 { name="gontr"; version="1.1.0"; sha256="0asvpc3nizcn7cqdxr1j9hvhprmrazd8c7a2svhmln4vg9x1zzkp"; depends=[]; }; - good = derive2 { name="good"; version="1.0.1"; sha256="0lgp8kpdiaprq78fzny5c344m2s1vb24y9x9m8rkg1kd769h56pv"; depends=[copula maxLik plyr]; }; - goodpractice = derive2 { name="goodpractice"; version="1.0.4"; sha256="039ivcb54v58fic8sy445s053yii34nzb170yn3fz6662ik8m8ax"; depends=[clisymbols covr crayon cyclocomp desc jsonlite lintr praise rcmdcheck rstudioapi whoami withr xml2 xmlparsedata]; }; + good = derive2 { name="good"; version="1.0.2"; sha256="06lzr8kb0pb5k10md23dlzkzx4qk8ajriwinj4mqhgd51manm3nk"; depends=[copula maxLik plyr]; }; + goodpractice = derive2 { name="goodpractice"; version="1.0.5"; sha256="1sz5np8lgs2s1rlswrjfw20x8c9lxdz1r0wxybrgakzlfpj1i85w"; depends=[clisymbols covr crayon cyclocomp desc jsonlite lintr praise rcmdcheck rstudioapi whoami withr xml2 xmlparsedata]; }; googleAnalyticsR = derive2 { name="googleAnalyticsR"; version="1.1.0"; sha256="0js73jwdsk3bgak61na0sqadjmb74b88rfgi0fxbgafz68xg5rgr"; depends=[assertthat cli dplyr googleAuthR httr jsonlite magrittr measurementProtocol memoise purrr rlang tibble tidyr usethis whisker]; }; - googleAuthR = derive2 { name="googleAuthR"; version="2.0.1"; sha256="0jx1p2yq9mm82bzw1hy75p30rhcmmadkh9qby9s1c5ahq8xsc6cv"; depends=[assertthat cli digest gargle httr jsonlite memoise rlang]; }; + googleAuthR = derive2 { name="googleAuthR"; version="2.0.2"; sha256="15ir747qmxdcfqvdpj48famrgd1c2r1l3gfawnv55akqbxdwhmgx"; depends=[assertthat cli digest gargle httr jsonlite memoise rlang]; }; googleCloudRunner = derive2 { name="googleCloudRunner"; version="0.5.0"; sha256="14nynl56gc8aj03wxbj243fz80j1wxd93ywfaivy1cgyfi3rid6z"; depends=[assertthat cli curl googleAuthR googleCloudStorageR googlePubsubR httr jose jsonlite openssl plumber usethis withr yaml]; }; googleCloudStorageR = derive2 { name="googleCloudStorageR"; version="0.7.0"; sha256="1yp8h87i17kald9pkr9icxd918n5vywk0h9q8lclip2slx9bry1p"; depends=[assertthat cli curl googleAuthR httr jsonlite openssl yaml zip]; }; googleCloudVisionR = derive2 { name="googleCloudVisionR"; version="0.2.0"; sha256="1n4gkmnwp9wadxz1izggxnpcpm4bz3imhq5y3i2szr8zwafcqqjv"; depends=[data_table glue googleAuthR jsonlite purrr]; }; @@ -11207,19 +11389,19 @@ in with self; { googlePublicData = derive2 { name="googlePublicData"; version="0.16.1"; sha256="15hyslpqvncg21q581h061rfyg99y8lavqw1x8hzl7xzd49bn9r5"; depends=[readxl XML]; }; googlePubsubR = derive2 { name="googlePubsubR"; version="0.0.4"; sha256="1f9nd93x2z82jwjw2nha2czcnix7r97h1g3llgfx1b970gsm3pk1"; depends=[cli googleAuthR magrittr]; }; googleTagManageR = derive2 { name="googleTagManageR"; version="0.2.0"; sha256="0ia3ndz5vf3bc5kckyxwn71nngml6p67v8r3n6h79s12xn9jzylg"; depends=[assertthat dplyr future googleAuthR httr jsonlite purrr]; }; - googleVis = derive2 { name="googleVis"; version="0.7.1"; sha256="067jcwbq0a06wbpaa46ngjs3hkpvz8q6v8019f15yr58kq2k2n9k"; depends=[jsonlite]; }; + googleVis = derive2 { name="googleVis"; version="0.7.3"; sha256="0swcf2vl3mvp2bsd7nra917pajyh27j2k3vmmrb6n8g55mazyisn"; depends=[jsonlite]; }; googleadsR = derive2 { name="googleadsR"; version="1.0.0"; sha256="02zr7y485bpp11z9njcb3c07aw454pvf8zsdqb4qswps6l1ni0gc"; depends=[jsonlite]; }; googledrive = derive2 { name="googledrive"; version="2.1.1"; sha256="10pv70nvsqh1yc12g5fj7avfihjzpj02m8s9f8sb0c1np9s4z2qb"; depends=[cli gargle glue httr jsonlite lifecycle magrittr pillar purrr rlang tibble uuid vctrs withr]; }; googlenlp = derive2 { name="googlenlp"; version="0.2.0"; sha256="0d0g18i3im2s5f14k69ym3vwf9a7zkaval3nwrip97xcl6kf4x9h"; depends=[dplyr httr jsonlite purrr readr rlang]; }; googler = derive2 { name="googler"; version="0.0.1"; sha256="1aayji3ncqxl58k29d93dbx05s9rp9bc63fl2cpl1cys7gilblxx"; depends=[jsonlite tibble]; }; googlesheets4 = derive2 { name="googlesheets4"; version="1.1.1"; sha256="1kzwhs9zrx1i4kqhdqrkzyhnwx25j8j2pcg7ja2dxfalihs67k65"; depends=[cellranger cli curl gargle glue googledrive httr ids lifecycle magrittr purrr rematch2 rlang tibble vctrs withr]; }; - googletraffic = derive2 { name="googletraffic"; version="0.1.5"; sha256="0r9v0nrn21khsirh12qn634qzcd4mgq36ax27gx087a6i97zxwnl"; depends=[ColorNameR dplyr googleway htmlwidgets plotwidgets png raster schemr sf sp stringr webshot2]; }; + googletraffic = derive2 { name="googletraffic"; version="0.1.6"; sha256="18hk7rg60s8bbr0kn0mi1j7r8iycjfmpnmp88lslzvhq0d1mvaxx"; depends=[ColorNameR dplyr googleway htmlwidgets plotwidgets png raster schemr sf sp stringr webshot2]; }; googleway = derive2 { name="googleway"; version="2.7.8"; sha256="17mihhyavl07aiyhm5pcsihmwznbdca5yfcaq4qk8kiyh81nnml0"; depends=[curl googlePolylines htmltools htmlwidgets jpeg jqr jsonlite magrittr scales shiny viridisLite]; }; gor = derive2 { name="gor"; version="1.0"; sha256="05wjmp8r58jv0ppq54vjw8xbwdlmksh5zch8cjm3ss20fsvqxdsj"; depends=[igraph]; }; goric = derive2 { name="goric"; version="1.1-2"; sha256="004nx29wz191rp0naa73r762bf6lap931lwrxifhz7izl47jzfj0"; depends=[MASS Matrix mvtnorm nlme quadprog]; }; gorica = derive2 { name="gorica"; version="0.1.4"; sha256="1r8dg9wcqxd53zm27mf0554x2zlsclbfmqqwjbkywa3np6gi358y"; depends=[bain lavaan limSolve lme4 MASS mvtnorm quadprog]; }; - gosset = derive2 { name="gosset"; version="1.0"; sha256="1as3p5mpkhg205ssxzf26xn84b8abgzp413dw2fganidh7i9dmff"; depends=[BradleyTerry2 DescTools ggparty ggplot2 ggrepel partykit patchwork PlackettLuce psychotools qvcalc tidyr]; }; - gotop = derive2 { name="gotop"; version="0.1.2"; sha256="1dvcgz7ha637ixjqmgcwhvl3f9kpx4fdq8im40iz8xwnxqwmrlgx"; depends=[htmltools jsonlite]; }; + gosset = derive2 { name="gosset"; version="1.3"; sha256="0k50vjfrqqkw9anq012pbq861lnq3ihjh310rp12xyvzbzf6d6c7"; depends=[BradleyTerry2 DescTools ggparty ggplot2 ggrepel partykit patchwork PlackettLuce psychotools qvcalc tidyr]; }; + gotop = derive2 { name="gotop"; version="0.1.4"; sha256="0q65qvzg5f36hp1f3yigmysy83x40jgz4c1ksch56b7svmfbrq0s"; depends=[htmltools jsonlite]; }; govStatJPN = derive2 { name="govStatJPN"; version="0.1"; sha256="03sywa7rl5rblvv370mfszz5ngp850qf32yydy1fdx10lv5amrfl"; depends=[]; }; govdown = derive2 { name="govdown"; version="0.10.1"; sha256="00ndpp3v6z2497xlhhc92pa7w93qk9x8m6ibswj9dfh978d07028"; depends=[rmarkdown]; }; govinfoR = derive2 { name="govinfoR"; version="0.0.3"; sha256="0rxlk5wib9l03g7lm97z3n3dcywzs86h8yv9hh0w0f4h0ya9zcj4"; depends=[cli dplyr httr2 janitor lubridate stringr tidyr]; }; @@ -11229,9 +11411,9 @@ in with self; { gp = derive2 { name="gp"; version="1.1"; sha256="0w5wcjzgjajfx29whqkn3xv3v9bn4q0almmmsb7qw79dnbv5c16s"; depends=[Rfast RNGforGPD]; }; gpairs = derive2 { name="gpairs"; version="1.3.3"; sha256="08m1ydrr239vnhjbl47mng3i2w9bqmd8fijrwsraq5ysvn826n27"; depends=[barcode colorspace lattice MASS vcd]; }; gpbStat = derive2 { name="gpbStat"; version="0.4.3"; sha256="07zjc033jazpmax7x96zd5g4z1rz9qmmfwzssl7p3d9ff7aiayvx"; depends=[dplyr magrittr purrr tibble tidyr]; }; - gpboost = derive2 { name="gpboost"; version="1.3.0"; sha256="0m79rm97n7hg7qjxcvywc0kk9dq56xsagci4jbfy41q9flrzilnh"; depends=[data_table Matrix R6 RJSONIO]; }; + gpboost = derive2 { name="gpboost"; version="1.5.0"; sha256="0wmf0vddb9w3sx2lsy9m80d7c52xz6sdmx3fdal8g8n898z1rk8h"; depends=[data_table Matrix R6 RJSONIO]; }; gpg = derive2 { name="gpg"; version="1.2.9"; sha256="0k2f00l400dcxa8akhy48a34w7nhbdmpq3nz6lbwp0cqa7aj678z"; depends=[askpass curl]; }; - gpindex = derive2 { name="gpindex"; version="0.6.0"; sha256="187h9bz9g8ca81jd00sppwckq94l1c27j5plq1hw8iirfjm1xap7"; depends=[]; }; + gpindex = derive2 { name="gpindex"; version="0.6.1"; sha256="1xl2hcw3qpqwlg655ajg8snyp41s5cb9kxridysch7fjmyj7iymy"; depends=[]; }; gpk = derive2 { name="gpk"; version="1.0"; sha256="1zfhkqyypb24mhbj2zi9qy3gw0kqxvlp8j5ni3zm7k5rz1bnrygg"; depends=[]; }; gpkg = derive2 { name="gpkg"; version="0.0.8"; sha256="0bx6mjvbzlli3fykrakkm8554hi4arf1ym1z9gcagybcjp4dbia1"; depends=[DBI]; }; gplite = derive2 { name="gplite"; version="0.13.0"; sha256="0nxms34dfmbi3rz6x0yz8pn9a1v6w4k2w6jz1qrbqclmlg66g8vs"; depends=[Matrix Rcpp RcppArmadillo]; }; @@ -11243,8 +11425,10 @@ in with self; { gps = derive2 { name="gps"; version="1.2"; sha256="06vz0vs95z7cbmgsf71114d2gaqx7bn4zl6m33qg22aflna4shsr"; depends=[Matrix]; }; gps_track = derive2 { name="gps.track"; version="1.0.0"; sha256="064l4pi44n3vwwz04rd6fs74lja2yvsr38nf911w7ighafp7s7ph"; depends=[nngeo raster sf sp]; }; gptoolsStan = derive2 { name="gptoolsStan"; version="0.1.0"; sha256="1f2aigkqpmbi8hxcivrbbfrpl3qs8fi2hcbvmcdc3k7j6znv4al3"; depends=[]; }; - gptstudio = derive2 { name="gptstudio"; version="0.3.0"; sha256="1530qk7189mcmv9m33r4v66mj0w429n2vj3sg5943r6f8fg3kaxz"; depends=[assertthat bslib callr cli colorspace glue htmltools htmlwidgets httr2 jsonlite magrittr purrr rlang rstudioapi shiny shiny_i18n stringr waiter yaml]; }; + gptr = derive2 { name="gptr"; version="0.6.0"; sha256="17kf5azrm8xhc26pkv7fsqlfw1430h6024n3nz01kfmjyjqs348m"; depends=[jsonlite RCurl]; }; + gptstudio = derive2 { name="gptstudio"; version="0.4.0"; sha256="0hlmpysw3wlz2nvixbdz2gd9nk290jpfj5jcjidi6cn3skykvkdv"; depends=[assertthat bslib cli colorspace curl fontawesome glue htmltools htmlwidgets httr2 ids jsonlite magrittr purrr R6 rlang rstudioapi rvest shiny shiny_i18n SSEparser stringr waiter yaml]; }; gptzeror = derive2 { name="gptzeror"; version="0.0.1"; sha256="1xdzg0xazim7qn54zh4wkix0xn0z49b3grrazr7xhjbqx29aca48"; depends=[cli curl dplyr httr2 lifecycle tidyr]; }; + gpuR = derive2 { name="gpuR"; version="2.0.6"; sha256="1z9s3c4lspbm29bp1l2sixlfps04aif70rv1p1db1f1xwk6vw3bn"; depends=[BH Rcpp RcppEigen RViennaCL]; }; gpx = derive2 { name="gpx"; version="1.1.0"; sha256="0x9b3mnbrim690l4wnyzk47bgywvnw4h4l8qznnx7zkpqib2hn5i"; depends=[lubridate rvest xml2]; }; gqlr = derive2 { name="gqlr"; version="0.0.2"; sha256="0gzhqyrbnz3qjzkr4slryrlfhlaxm474y9fahlj0sb0hvcx68pxj"; depends=[graphql jsonlite magrittr pryr R6]; }; gquad = derive2 { name="gquad"; version="2.1-2"; sha256="09hcs2lgqnim29gpd805b5ndxi22z2xwsf25rb1zckxf9c7bn7sj"; depends=[ape seqinr]; }; @@ -11257,7 +11441,7 @@ in with self; { gradeR = derive2 { name="gradeR"; version="1.0.10"; sha256="1ngfrminhsk3155da0vjmvrk66nbnak8p1ns20cw32qayq6wyrr2"; depends=[callr jsonlite testthat]; }; gradientPickerD3 = derive2 { name="gradientPickerD3"; version="0.1.0.0"; sha256="0b20iqfipr7migwk1fl4lvdf4ghprqivcgmchfshhr8q82hyd1q0"; depends=[htmlwidgets jsonlite shiny]; }; grafify = derive2 { name="grafify"; version="4.0.1"; sha256="0349sz0gykm69gf7n54g8snvjb8fkfx4cgfwp8bpvib4r9dbsllp"; depends=[car emmeans ggplot2 Hmisc lme4 lmerTest magrittr mgcv patchwork purrr tidyr]; }; - grafzahl = derive2 { name="grafzahl"; version="0.0.8"; sha256="1pccxzraz9sri69774svj3sb1fxq00lq8261z0fcm0j17mqmysyq"; depends=[jsonlite lime quanteda reticulate]; }; + grafzahl = derive2 { name="grafzahl"; version="0.0.11"; sha256="0zx6fqwklyi3sc1p59nb71mgrfnp7bqw5axmddj3706cawlrqrb8"; depends=[jsonlite lime quanteda reticulate]; }; grainscape = derive2 { name="grainscape"; version="0.4.4"; sha256="0c9ms97xnz7z5r2hhwbw0qpcmknp2wk327z95x751yjvgbps3lkg"; depends=[ggplot2 igraph raster Rcpp sf sp]; }; gramEvol = derive2 { name="gramEvol"; version="2.1-4"; sha256="1am5nlnyawi4lybi10ag4fdhddvbwsdzrmr6f66bzspdpl4s26g9"; depends=[]; }; grand = derive2 { name="grand"; version="0.9.0"; sha256="08lgwpkbamb7p5a59q0dp1n7np9kmmvccvg97bl7937ishx50mg5"; depends=[igraph]; }; @@ -11276,7 +11460,7 @@ in with self; { grapherator = derive2 { name="grapherator"; version="1.0.0"; sha256="071by9b8figbsf4g0f8a8mgcdksjksc57mnlgggilw7py1yjnjlh"; depends=[BBmisc checkmate deldir ggplot2 lhs reshape2 vegan]; }; graphframes = derive2 { name="graphframes"; version="0.1.2"; sha256="1bv7d0sggwab4rd486ayw9gkb5ja5p5fin5pn92xnrmz8cgwsfxq"; depends=[forge sparklyr tibble]; }; graphhopper = derive2 { name="graphhopper"; version="0.1.2"; sha256="1zrnwh86jv37z07b6l1i94dgjn8k3b3a3f76gfjsyyxvlc64i76x"; depends=[dplyr googlePolylines httr jsonlite magrittr tibble]; }; - graphicalExtremes = derive2 { name="graphicalExtremes"; version="0.3.1"; sha256="060lm9hjhcfci4lj843il038sla05ryzxgcbi2azh5pfq1y5vsl0"; depends=[corpcor edmcr glassoFast glmnet igraph mvtnorm osqp Rdpack]; }; + graphicalExtremes = derive2 { name="graphicalExtremes"; version="0.3.2"; sha256="18gyfynx9rd06168vv1qxa8hg7ibwv0h2mx1ppizrnrl7ciwwis1"; depends=[corpcor CVXR edmcr glassoFast glmnet igraph mvtnorm osqp Rdpack]; }; graphicalVAR = derive2 { name="graphicalVAR"; version="0.3.4"; sha256="1p5x77ck3prs8782kv176qq9d5ngw3zz3w6qg7aq5658pwc87gd3"; depends=[dplyr glasso glmnet igraph Matrix mvtnorm qgraph Rcpp RcppArmadillo rlang]; }; graphkernels = derive2 { name="graphkernels"; version="1.6.1"; sha256="1fwl5a13mdmia374zas0vvd4dlfnp4in9gj42c0iq01icy1wq0la"; depends=[igraph Rcpp RcppEigen]; }; graphlayouts = derive2 { name="graphlayouts"; version="1.1.1"; sha256="009q5y46lbizdabbb6a61xlfa3g5lf3nd9w42709lcxi0ad4bhkv"; depends=[igraph Rcpp RcppArmadillo]; }; @@ -11285,19 +11469,20 @@ in with self; { graphsim = derive2 { name="graphsim"; version="1.0.3"; sha256="16djk5zm2pnvfyb2783rdyi6a0gspm23br7xxgb2c8wfd9gf430n"; depends=[gplots igraph Matrix matrixcalc mvtnorm]; }; graposas = derive2 { name="graposas"; version="1.0.0"; sha256="0wyrzhmkswx7s2a78lzphqm3jz9akxc462gy0icpvxn2hff9wvki"; depends=[GA mvtnorm]; }; grateful = derive2 { name="grateful"; version="0.2.4"; sha256="0g1xn8chm4if31xfd012w6zj6gl7s19yifp1pyp6v0frpslcks4b"; depends=[knitr remotes renv rmarkdown rstudioapi]; }; - grates = derive2 { name="grates"; version="1.2.0"; sha256="0b6bisszv3nw90vsj1fpc9hmw0dw86p2lwm9kbmranrcb8m3zz6l"; depends=[]; }; - gratia = derive2 { name="gratia"; version="0.8.2"; sha256="0gfilxh697laf1y20kmrzjrgd1xypf529cw9xxzy64z7rn0jraih"; depends=[cli dplyr ggplot2 lifecycle mgcv mvnfast nlme patchwork pillar purrr rlang stringr tibble tidyr tidyselect vctrs]; }; + grates = derive2 { name="grates"; version="1.2.1"; sha256="1sqvrjyv8ncls9nvhfw6y4nyfdc349n8hyrmnfbqlm2rdhgnf6qr"; depends=[]; }; + gratia = derive2 { name="gratia"; version="0.9.0"; sha256="1hkfaw2vwm4dw73fn4glkwnhvbf2wc3iyz5979rsfabn5i6g91br"; depends=[cli dplyr ggokabeito ggplot2 lifecycle mgcv mvnfast nlme patchwork pillar purrr rlang stringr tibble tidyr tidyselect vctrs withr]; }; graticule = derive2 { name="graticule"; version="0.4.0"; sha256="0i2nhsrhixbwisgx8354aqsnik5sax9m63fzagmj4k3fcnpry7b0"; depends=[geosphere raster reproj sp]; }; - grattan = derive2 { name="grattan"; version="2024.0.0"; sha256="0wq7k7h4kgq7q5r53n53bddssywx6lb3jqi74jfd3gdgixx2sp6q"; depends=[assertthat checkmate data_table fastmatch forecast fy grattanInflators hutils hutilscpp ineq magrittr]; }; - grattanInflators = derive2 { name="grattanInflators"; version="0.5.0"; sha256="0lp000wgl1jkfhbb69kpxlpnarwwybzys6waxppacd5xlimynl12"; depends=[data_table fy hutils]; }; + gratis = derive2 { name="gratis"; version="1.0.7"; sha256="0y9gblkcn145r8kx4447waqwc59iibm6nlmdykf6vrwn1y5vssa3"; depends=[doRNG dplyr feasts fGarch foreach forecast GA generics magrittr mvtnorm polynom purrr shiny tibble tsfeatures tsibble]; }; + grattan = derive2 { name="grattan"; version="2024.1.1"; sha256="0cxgj20c7gk55p22rmy1al44if4pk90yf9zify2jz9h7pviwgpjx"; depends=[assertthat checkmate data_table fastmatch forecast fy grattanInflators hutils hutilscpp ineq magrittr]; }; + grattanInflators = derive2 { name="grattanInflators"; version="0.5.3"; sha256="1pky7gi9rwxggzv2rhqjkzlql16xs506ba0yhqy1dqs219k1dvwd"; depends=[data_table fy hutils]; }; gravitas = derive2 { name="gravitas"; version="0.1.3"; sha256="11n85bdmigqasbq8c1amj1k7manfvs3gnax2ihsf2vp56s9c463p"; depends=[dplyr ggplot2 ggridges ineq lubridate lvplot magrittr RColorBrewer rlang shiny stringr tibble tidyr tsibble]; }; gravity = derive2 { name="gravity"; version="1.1"; sha256="05kkprv63x9m715yv9kx2k70bqnkacc72zr0aljcj0ry10nl40c6"; depends=[censReg dplyr glm2 lmtest magrittr MASS multiwayvcov purrr Rdpack rlang sandwich survival tibble tidyr]; }; gravmagsubs = derive2 { name="gravmagsubs"; version="1.0.1"; sha256="1kc3dm2wmbwbad6sdhzs6bnpmri66142rc552cd75pijzbnymqvf"; depends=[Rcpp]; }; - greatR = derive2 { name="greatR"; version="1.1.0"; sha256="0mibjbzyk7fvmma596vs9mlf43spzx8qk6aj0622ajxb6lszdqmm"; depends=[cli data_table furrr future ggplot2 neldermead optimization scales]; }; + greatR = derive2 { name="greatR"; version="2.0.0"; sha256="0fb065y4k7zsxb91kswssfq8zlg1p9780mx8wnzxn1pydckn4z3n"; depends=[cli data_table furrr future ggplot2 neldermead optimization patchwork scales]; }; grec = derive2 { name="grec"; version="1.6.0"; sha256="1zv71cb6kj4bm11ihygzxhmc5hcxn7m4pmyga4fpxmc2xz8pv1sz"; depends=[abind imagine lifecycle raster terra]; }; greed = derive2 { name="greed"; version="0.6.1"; sha256="05p24991s97h0hmvv88s3hca9b50384hm6qm771dqznqs5m4ggrq"; depends=[cba cli future ggplot2 gridExtra gtable listenv Matrix Rcpp RcppArmadillo RSpectra]; }; greekLetters = derive2 { name="greekLetters"; version="1.0.2"; sha256="0c52lfpm0awd3hc6ggnjqz5ymcbbm74qlj9iznkd5gln85q29vqc"; depends=[assertthat stringr]; }; - greeks = derive2 { name="greeks"; version="1.3.5"; sha256="10i3v4rkbw3njpm86ss3r47k79yqp2j45k53rxvc56kxx9dsaqz4"; depends=[dqrng ggplot2 magrittr plotly Rcpp shiny tibble tidyr]; }; + greeks = derive2 { name="greeks"; version="1.4.2"; sha256="11ps312r6nhda5a2d7mjxzjnlvfj2kz31hyvnfngfpwdg3ndw1hr"; depends=[dqrng ggplot2 magrittr plotly Rcpp shiny tibble tidyr]; }; greenclust = derive2 { name="greenclust"; version="1.1.1"; sha256="1wdz2lrrchwsxm68mvjcx3nlnr93n0jj8d5gr0j55idn7wn73gdq"; depends=[]; }; greencrab_toolkit = derive2 { name="greencrab.toolkit"; version="0.2"; sha256="11lrbjm91m2lbgr0wdy84mal4qxs9x0bmniaijxpw9fdwrkqq0aw"; depends=[BH Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; gregRy = derive2 { name="gregRy"; version="0.1.0"; sha256="1b8c8wwp8r2v51ayy7rbav24wfz75z1pylg0p4vsasaw9p06dlbz"; depends=[dplyr magrittr purrr tidyr]; }; @@ -11320,7 +11505,7 @@ in with self; { gridGraphviz = derive2 { name="gridGraphviz"; version="0.3-1"; sha256="0yzy7w4bk3rn9yjqy06gzkcs0dla3n49z3v1z0mjikg8cd97d5ni"; depends=[graph Rgraphviz]; }; gridOT = derive2 { name="gridOT"; version="1.0.1"; sha256="106h1lk2fyfl68iwmbqbm9h8ip75ibanr1dsi6nrmd54pz475ry8"; depends=[Rcpp RcppArmadillo]; }; gridSVG = derive2 { name="gridSVG"; version="1.7-5"; sha256="1p8qnx9q96bni39x44l40rgcdi9r440zbipdfvkbs2paysx6mkr5"; depends=[jsonlite XML]; }; - gridpattern = derive2 { name="gridpattern"; version="1.1.1"; sha256="1v7xfgbnrr4v3arr7nm0663aywn47xb89sd0rn9s9dcz7r50aa2i"; depends=[glue memoise png rlang sf]; }; + gridpattern = derive2 { name="gridpattern"; version="1.2.2"; sha256="1fa787m4ns3s7xnai1kqplz32nhy4pa1v6w7kzyjv9qlyfhvrw92"; depends=[glue memoise png rlang sf]; }; gridsampler = derive2 { name="gridsampler"; version="0.6"; sha256="0wqpqg9c372sv8zqks6v93gawiyfghw58hn7m8q45dxpqm16ss3k"; depends=[BiasedUrn ggplot2 plyr reshape2 shiny shinyBS shinythemes]; }; gridstackeR = derive2 { name="gridstackeR"; version="0.1.0"; sha256="01yazynwprzjygkh0dwrlvbjsmxvfy1pxr0nldnbngmq10wvpp2n"; depends=[checkmate htmltools shiny shinyjs]; }; gridtext = derive2 { name="gridtext"; version="0.1.5"; sha256="0f7i2qb8fawi8agy2iz2c173kfwj7cbb5ikjix64nmzqc5j7363d"; depends=[curl jpeg markdown png Rcpp rlang stringr xml2]; }; @@ -11341,7 +11526,7 @@ in with self; { grouprar = derive2 { name="grouprar"; version="0.1.0"; sha256="0n7pd93a3v3ii85g2ms02zdvy8rkb0j8kfp1bvmfy71kd1ghc7d5"; depends=[extraDistr ggplot2 gridExtra stringr tidyr]; }; groupwalk = derive2 { name="groupwalk"; version="0.1.2"; sha256="1nhz9lyh863krxqqi189zpng12y658615w372km98scn1lwl6fi9"; depends=[]; }; grove = derive2 { name="grove"; version="1.1.1"; sha256="1flqjkmvl4wmz53hckn9j9w4lg4kjrjbx98hzlfkzc9ikkp68d7z"; depends=[Rcpp RcppArmadillo wavethresh]; }; - growR = derive2 { name="growR"; version="1.2.0"; sha256="1sw9sdv008n4xsv41yyrbq4qw9w0swg4ff2jaa41gvn35fax7blj"; depends=[R6 Rdpack rlang]; }; + growR = derive2 { name="growR"; version="1.3.0"; sha256="0z2kz7gd5grpb5kan6j6nbjsgdii7is4bwyx3jzsziq74q239fig"; depends=[R6 Rdpack rlang]; }; growfunctions = derive2 { name="growfunctions"; version="0.16"; sha256="1v1sawv9fbb6lw4ynjdkj02z8rv5k8pkw55wmg2ws3jisy3xrcm7"; depends=[ggplot2 Rcpp RcppArmadillo reshape2 spam]; }; growth = derive2 { name="growth"; version="1.1.1"; sha256="05yxjlbv1i4ly8yp3aqbxzq1z2mp7sfx7xyqw48qsdv0acqai7jy"; depends=[rmutil]; }; growthPheno = derive2 { name="growthPheno"; version="2.1.24"; sha256="0cwdxd47jpgvr9i7xj7hibaa8l8n7gm91i3qv5ikp9p2y93qwbzs"; depends=[dae GGally ggplot2 Hmisc JOPS RColorBrewer readxl reshape stringi]; }; @@ -11353,18 +11538,17 @@ in with self; { grpCox = derive2 { name="grpCox"; version="1.0.2"; sha256="02x98zmaa7f73qv62wzr0vyyci7kcx7mmyw7cm3inlyphlkywvlw"; depends=[colorspace MASS Matrix Rcpp RcppEigen]; }; grpSLOPE = derive2 { name="grpSLOPE"; version="0.3.3"; sha256="05417f0pnp21svi30vcbkkw16zyg1kxynfigh5w2jdjmd12cb899"; depends=[Rcpp]; }; grplasso = derive2 { name="grplasso"; version="0.4-7"; sha256="0jf48ahc6d6biwx235dlvbk1papxkqbcnvxsr93p5047pjm02y3a"; depends=[]; }; - grplassocat = derive2 { name="grplassocat"; version="1.0"; sha256="0pi5vq7yqg0ha91y6296ckshxyq3135cg6zcs9x6xba5m5024k4p"; depends=[grplasso]; }; - grpnet = derive2 { name="grpnet"; version="0.3"; sha256="0q9h02aqyc1ywdmnk7x9z6n6bpgmcmz1klb62nbvz6mhxq9mnv5m"; depends=[]; }; + grpnet = derive2 { name="grpnet"; version="0.4"; sha256="1ka9i7fg9y87rabjdnggclb1f395m1pbmhwics2wayd9q3m5a6mk"; depends=[]; }; grpreg = derive2 { name="grpreg"; version="3.4.0"; sha256="1bfnahkb249996m3qmf96g4ldgnw7xfcm2wr45ccrlk3mw5x4mzx"; depends=[Matrix]; }; grpsel = derive2 { name="grpsel"; version="1.3.1"; sha256="0b901si4xm6306mzfk3nmwg2h8pk9rhvv2m08v3qnbnxaw06my2h"; depends=[ggplot2 Rcpp RcppArmadillo]; }; grpseq = derive2 { name="grpseq"; version="1.0"; sha256="187c3y3rsls1a66phb6kvndfh0rz7h8kl6w10gi9k6r8q6isvl9i"; depends=[mvtnorm]; }; grr = derive2 { name="grr"; version="0.9.5"; sha256="0arbcgrvhkwb5xk4nry1ffg2qj0v8ivhjghdr505ib4357g0c9i9"; depends=[]; }; grt = derive2 { name="grt"; version="0.2.1"; sha256="1dw5rjs82r82l6qryyyq9cczm770v4iv60d7pi1nb4b0733ndbd5"; depends=[MASS]; }; grwat = derive2 { name="grwat"; version="0.0.4"; sha256="10sv1kzf9z1c27d99rvxvx1gmhga6rj1mcyfkvyg93gd8i1jwxg9"; depends=[cli dplyr ggplot2 lubridate magrittr mblm R_utils Rcpp rlang stringr tidyr trend zoo]; }; - gsDesign = derive2 { name="gsDesign"; version="3.6.1"; sha256="065nyxkcvfdxinbh03jayrh1fqf0pd0ppy5550wcrdlc66628swg"; depends=[dplyr ggplot2 gt magrittr r2rtf rlang tibble tidyr xtable]; }; - gsDesign2 = derive2 { name="gsDesign2"; version="1.1.1"; sha256="12wydy7gx2aml2i82adsqafqaq7sg6zvab38xwqp46jnmqc1isyk"; depends=[corpcor data_table dplyr gsDesign gt mvtnorm npsurvSS r2rtf Rcpp tibble tidyr]; }; + gsDesign = derive2 { name="gsDesign"; version="3.6.2"; sha256="171xbfyrnrsncg4znd8m0r1r9kxrdcxrs03ncmchq1qifq5nc4al"; depends=[dplyr ggplot2 gt magrittr r2rtf rlang tibble tidyr xtable]; }; + gsDesign2 = derive2 { name="gsDesign2"; version="1.1.2"; sha256="0kyj5pv5cr8ljbhzsly70115czhgx5wrpcgpd0jvv2djjf21klh2"; depends=[corpcor data_table dplyr gsDesign gt mvtnorm npsurvSS r2rtf Rcpp survival tibble tidyr]; }; gsEasy = derive2 { name="gsEasy"; version="1.5"; sha256="1mvqnyjzi5ik5bqisxpf6a592n9rnkv915kwnis238akwvkspspa"; depends=[ontologyIndex Rcpp]; }; - gsMAMS = derive2 { name="gsMAMS"; version="0.7.1"; sha256="00h6b0zxhiqpgngmwazx2lpzvy3x85mbishmmqn51v4k3568dw52"; depends=[mvtnorm survival]; }; + gsMAMS = derive2 { name="gsMAMS"; version="0.7.2"; sha256="0n5f1mq81pzbzk1bly8pdbw7ryyb081sg02kc3wiyklhk071la3c"; depends=[mvtnorm survival]; }; gsalib = derive2 { name="gsalib"; version="2.2.1"; sha256="145zyc2sqa0acn9crilpw5njms7w7ca3jgl499lhsahlb6ws98rx"; depends=[]; }; gsarima = derive2 { name="gsarima"; version="0.1-5"; sha256="0nmn4hlvhl8dw7pkpf010x9qjd6w8drdlcj47qv0sap8wngrwhzg"; depends=[MASS]; }; gsbDesign = derive2 { name="gsbDesign"; version="1.0-3"; sha256="07a5dpwfw052hx0ryrl54z4w71l9q6grh9cx5nf2h3v0lz45n6bp"; depends=[ggplot2 gsDesign lattice]; }; @@ -11376,11 +11560,11 @@ in with self; { gsignal = derive2 { name="gsignal"; version="0.3-5"; sha256="0qyb8p8vg7sfx6kgib03lwidxh9my669asbjwvbpwzxd4sb51gsf"; depends=[pracma Rcpp]; }; gsisdecoder = derive2 { name="gsisdecoder"; version="0.0.1"; sha256="1h7a9j4gsdk8nasfkzfizlarx335ra0j0yz98a2000v2qzm2a5qy"; depends=[Rcpp]; }; gsl = derive2 { name="gsl"; version="2.1-8"; sha256="159d782nz7fqhgcj3fa79hlmkdrqnkd0ypgzcl71kgas92zhjdpk"; depends=[]; }; - gslnls = derive2 { name="gslnls"; version="1.2.0"; sha256="1nxlxm882nbpyjnjlfbsj5wz03nv3kd0jylda7wpw51nqf1jp0mz"; depends=[Matrix]; }; + gslnls = derive2 { name="gslnls"; version="1.3.2"; sha256="1rfzdd9qsiqam5m9f2pi909lchcmmb1ljqiiwd5dpblbk8nqhm82"; depends=[Matrix]; }; gsloid = derive2 { name="gsloid"; version="0.2.0"; sha256="1z9fci21870d8z7qsc8hzj3vxlxrr7gxy1vibga3acayxz21lhvs"; depends=[]; }; gsmoothr = derive2 { name="gsmoothr"; version="0.1.7"; sha256="00z9852vn5pj04dhl3w36yk0xjawniay6iifw1i7fd8g98mgspxp"; depends=[]; }; gson = derive2 { name="gson"; version="0.1.0"; sha256="10d3v543bvsyrwg3dm04xpzxjvmba1d1fhcf2zfb3l36pvjvxp8l"; depends=[jsonlite rlang tidyr]; }; - gspcr = derive2 { name="gspcr"; version="0.9.4.1"; sha256="1ankzsqq1b662831bm3kdlzzdpl6nw05yira5yx36pm0vnhhcn7y"; depends=[dplyr FactoMineR ggplot2 MASS MLmetrics nnet PCAmixdata reshape2 rlang]; }; + gspcr = derive2 { name="gspcr"; version="0.9.5"; sha256="19k07yg3z2p63dgq8hyyqpnq2r23rwbh1wqwna4d4w1bif9vgq8b"; depends=[dplyr FactoMineR ggplot2 MASS MLmetrics nnet PCAmixdata reshape2 rlang]; }; gsrs = derive2 { name="gsrs"; version="0.1.1"; sha256="0x5fll59l000dqszy0gmhsfqgpaljc57j1grqg5c7y1p3vji38in"; depends=[doParallel foreach MASS]; }; gsrsb = derive2 { name="gsrsb"; version="1.2.1"; sha256="0b2dzacd5axd4pfhv0q1gd7hk0fbfj738zdlabzs8dc9737bykiq"; depends=[ldbounds mvtnorm xtable]; }; gss = derive2 { name="gss"; version="2.2-7"; sha256="0siz9xmfiirkg8sb0amzyp7k1mjbgz8jmsmlc8schw65093i84rv"; depends=[]; }; @@ -11394,8 +11578,9 @@ in with self; { gt4ireval = derive2 { name="gt4ireval"; version="2.0"; sha256="1d567iz57xqszm45l1wq4n2qrrmyz8ssll1vllfmncb9ibbnx4f3"; depends=[]; }; gtExtras = derive2 { name="gtExtras"; version="0.5.0"; sha256="000vwq4k0vrn75vzy6iflqydxl81rgn06a8kqca99gwywcqr3gvv"; depends=[cli commonmark dplyr fontawesome ggplot2 glue gt htmltools knitr paletteer rlang scales]; }; gtWAS = derive2 { name="gtWAS"; version="1.1.0"; sha256="1kbkz0iwc3gfj982m93m2wdr1xm5rhy70k6bdc7kms9ivh5fh6sh"; depends=[]; }; - gtable = derive2 { name="gtable"; version="0.3.4"; sha256="0xvrkhcv1896mf3n43mva2mrmk0d8np7sjrykpg1pv54f69h6ckh"; depends=[cli glue lifecycle rlang]; }; + gtable = derive2 { name="gtable"; version="0.3.5"; sha256="0wpavsypw2yp0pklmqw0qcwsh8smx5gr2kkxmgdmm52r0fiw37xi"; depends=[cli glue lifecycle rlang]; }; gte = derive2 { name="gte"; version="1.2-3"; sha256="0fnrpgfji5f1n8nra0d8xghqgsjil7r2j6xnbmfm7mjafcav4wwk"; depends=[survival]; }; + gtexture = derive2 { name="gtexture"; version="1.0.0"; sha256="1smlnnqsh1akjb2npn73qskq3dd3ypy40v3vkmqdf4qa2qx8yayk"; depends=[dlookr dplyr fitscape igraph magrittr rlang tidyr]; }; gtfs2emis = derive2 { name="gtfs2emis"; version="0.1.0"; sha256="1nh3m57xhh12sm18d5lvf0i9z4ayn6kgbmp036lw89wz10s42w6z"; depends=[checkmate data_table furrr future gtfs2gps sf sfheaders terra units]; }; gtfs2gps = derive2 { name="gtfs2gps"; version="2.1-1"; sha256="0k65iy7armdn13bs31wr6gq7hdxpz5nqqzpdxpm5g1mkxwc9fi1g"; depends=[checkmate data_table furrr future gtfstools lwgeom progressr Rcpp sf sfheaders terra units]; }; gtfsio = derive2 { name="gtfsio"; version="1.1.1"; sha256="06kw2r00y277a822qqgjifmrz0l6gfq1dx8znrc2yhrk0ynadsjz"; depends=[data_table zip]; }; @@ -11410,6 +11595,7 @@ in with self; { gtsummary = derive2 { name="gtsummary"; version="1.7.2"; sha256="02jbsdv8wwncnrmqmf12pz3ld759s8ll5dl5rrxv8ad6qgqjbhnx"; depends=[broom broom_helpers cli dplyr forcats glue gt knitr lifecycle purrr rlang stringr tibble tidyr vctrs]; }; guaguas = derive2 { name="guaguas"; version="0.3.0"; sha256="0ngdwg297ndn763vx0qnvcsy5bhsr026hv8hvwgrz5w32mpw252d"; depends=[]; }; guardianapi = derive2 { name="guardianapi"; version="0.1.1"; sha256="17xmmr6pfzhdnmf45jzvk84gbfnmlw1qfv1gqjaw85vgm8b6jn6l"; depends=[dplyr httr jsonlite rlang tibble]; }; + guescini = derive2 { name="guescini"; version="0.1.0"; sha256="05vz4lvwh01s24cdsklqypkxz64ixrj4la5l5x0jgg8vsshjc727"; depends=[tibble]; }; guess = derive2 { name="guess"; version="0.1"; sha256="198pxi0yipgm9wccpj3y4a0gkibhyxcmb7v5dz7ipzrk44ha5g6j"; depends=[Rsolnp]; }; guidedPLS = derive2 { name="guidedPLS"; version="1.0.0"; sha256="1gmprd6a5nyglm36sdyk9dqbgqavf3a7gzjbm5jzb5ybhj9r2w61"; depends=[irlba]; }; guildai = derive2 { name="guildai"; version="0.0.1"; sha256="1y3m1756450dzcz1m8fdj53p2bw9zhisnp67fr2fhmv6kga37995"; depends=[config dplyr jsonlite processx rappdirs readr rlang rstudioapi tibble yaml]; }; @@ -11427,12 +11613,13 @@ in with self; { gwaRs = derive2 { name="gwaRs"; version="0.3.0"; sha256="1mjwsf1sbrd88psiz6f74zddv1wvhpxk5nxbfjpdrxs74rkc36fs"; depends=[data_table dplyr ggplot2 ggrepel RColorBrewer scales tidyr]; }; gwasforest = derive2 { name="gwasforest"; version="1.0.0"; sha256="122fg4pc409lvw4yvrc8ijm6d6j29b4aacd319a16caxkkydgwlb"; depends=[colorspace data_table dplyr ggplot2 ggrepel glue]; }; gwasrapidd = derive2 { name="gwasrapidd"; version="0.99.17"; sha256="1fmymw7vm4ana86mwf8figda20l601c7c6nr14444647x8cimlhx"; depends=[assertthat concatenate dplyr glue httr jsonlite lubridate magrittr pingr plyr progress purrr rlang stringr testthat tibble tidyr urltools writexl]; }; - gwavr = derive2 { name="gwavr"; version="0.2.0"; sha256="0wlbyl3r4sxcjyfbymcrynkcaqmqivl4qhh14nxjrg8lji47lad6"; depends=[dplyr elevatr httr jsonlite leaflet leaflet_extras magrittr miniUI nhdplusTools promises purrr scales sf shiny shinyWidgets terra tidyr units whitebox]; }; + gwavr = derive2 { name="gwavr"; version="0.3.1"; sha256="1hr1d66n5xf7ppmag70lzdnwp3m2jcs1qmh1nzrqq0nbqmqg8nck"; depends=[dplyr elevatr htmlwidgets httr jsonlite leaflet leaflet_extras miniUI nhdplusTools promises purrr scales sf shiny shinyWidgets terra tidyr units whitebox]; }; gwbr = derive2 { name="gwbr"; version="1.0.5"; sha256="08yhg56i1xrkmfcyr87gz0w6mzsm0isg3fjm6kmmgsq522cj3jjb"; depends=[]; }; - gwid = derive2 { name="gwid"; version="0.1.0"; sha256="13r286v6ckp64y36x8av8rlsvwh6ynzvi378l9xxxxfzc26w3zij"; depends=[data_table gdsfmt ggplot2 Matrix piggyback plotly RcppRoll SNPRelate]; }; + gwid = derive2 { name="gwid"; version="0.2.0"; sha256="1qkj6773ywm3mxry9d9yzf2m52dcmjg5h5031h48x6gpg4qjf1k2"; depends=[data_table gdsfmt ggplot2 lattice Matrix piggyback plotly RcppRoll shiny SNPRelate]; }; gwpcormapper = derive2 { name="gwpcormapper"; version="0.1.3"; sha256="0d8skx6rxas5qvhg7ykhymrzd6dawj45421vr66r4wi4hbdfjbzx"; depends=[attempt config corpcor crosstalk dplyr DT geodist glue golem htmltools leaflet pkgload plotly processx Rcpp sf shiny shinydashboard shinyjs viridis]; }; gwrpvr = derive2 { name="gwrpvr"; version="1.0"; sha256="0x15nv2pfv99c04lgs6q6hgczarld34xc4aqw9bn179m7j02v6m3"; depends=[]; }; gwrr = derive2 { name="gwrr"; version="0.2-2"; sha256="1pn84056fdrrjq8m13671hn4gvz40z0jsi6r5kv5b82fwzj4g57y"; depends=[fields lars]; }; + gwzinbr = derive2 { name="gwzinbr"; version="0.1.0"; sha256="17i6y4zqr4p6zrp77pjhnpdq8wrannklc4ybmsbh8vmsq26in7d2"; depends=[sp]; }; gym = derive2 { name="gym"; version="0.1.0"; sha256="0vcwzgawqwjsf65hr1mbjkz3px8zsibfkn42jpsg39n13jpfjq8v"; depends=[httr jsonlite]; }; gyro = derive2 { name="gyro"; version="1.4.0"; sha256="0zgzqgfd97bxb4crijlc9byak4dl5zrhp6ynch8yda8m3rx1gz92"; depends=[clipr colorsGen cxhull Morpho plotrix Polychrome purrr RCDT Rcpp rgl rstudioapi Rvcg]; }; h0 = derive2 { name="h0"; version="1.0.1"; sha256="0nw671dgf50zqmw6j8znig6ksqf68hbshc8v87dcig70j1sqab4k"; depends=[]; }; @@ -11455,7 +11642,7 @@ in with self; { hackeRnews = derive2 { name="hackeRnews"; version="0.1.0"; sha256="0vrdbk4dxbykb3hs35nxkl3s2ds92gs5qz66p85w8j5zjmwbw2x6"; depends=[future_apply httr jsonlite tibble]; }; hacksaw = derive2 { name="hacksaw"; version="0.0.2"; sha256="1ls4l53bsaxyd6lwka9z9sb6ypa2ymbxpfxhsj9k966031jv2vk3"; depends=[dplyr magrittr purrr rlang tibble tidyselect zeallot]; }; hacksig = derive2 { name="hacksig"; version="0.1.2"; sha256="0sc35vyi00r2b3hgn1xw2zffd704adschjwhx0niv5a1l33dxbkp"; depends=[dplyr future_apply rlang tibble tidyr]; }; - hagis = derive2 { name="hagis"; version="3.1.11"; sha256="1s4n08zy7agqs8a1jzzyyba93j1nnd0d3bz63j5xd3yvw36brzjf"; depends=[data_table ggplot2 pander]; }; + hagis = derive2 { name="hagis"; version="3.1.12"; sha256="18mcd8vm2dy50wfwfxbih841z1l8yml6fvb6y5qqq7a04h09k590"; depends=[data_table ggplot2 pander]; }; hahmmr = derive2 { name="hahmmr"; version="1.0.0"; sha256="19bds84pkimr71dy1365b71k7ihn7x86yalgcmagvkxgygpg3409"; depends=[data_table dplyr GenomicRanges ggplot2 glue IRanges patchwork Rcpp RcppArmadillo roptim stringr tibble zoo]; }; hakaiApi = derive2 { name="hakaiApi"; version="1.0.2"; sha256="0lxqk4cp1s1sm3nbsp74q1bpklmph620c2f1kii97h6yimnq9bi0"; depends=[dplyr httr R6 readr tibble]; }; hal9001 = derive2 { name="hal9001"; version="0.4.6"; sha256="1p88rpm4alkr56w4cjl8sxj6ylq991dsny11njcdx5rzc25jh8qi"; depends=[assertthat data_table glmnet Matrix origami Rcpp RcppEigen stringr]; }; @@ -11466,7 +11653,7 @@ in with self; { hamlet = derive2 { name="hamlet"; version="0.9.6"; sha256="076fh28grlrv38qywshi79m84jsz1ck9k4n0rg4svvr3gqkdbcn2"; depends=[]; }; handcodeR = derive2 { name="handcodeR"; version="0.1.2"; sha256="1icr2474y2q2jnax7ps9lmh13hkrpq4z2yacffc1scm2cpg18y6a"; depends=[shiny shinyWidgets]; }; handlr = derive2 { name="handlr"; version="0.3.0"; sha256="0l0jwlslz2pyg7q447k56acfhgmx5njsriqdrwd02zzbsc3g6wm5"; depends=[crul jsonlite mime urltools xml2 yaml]; }; - handwriter = derive2 { name="handwriter"; version="3.0.0"; sha256="0kb09bl8x3jqhr99j454q00d4cwnih49gpqbjydb2wk2vxzvq4gj"; depends=[doParallel dplyr foreach ggplot2 igraph lpSolve magick mc2d png purrr Rcpp RcppArmadillo reshape2 Rfast rjags stringr tidyr]; }; + handwriter = derive2 { name="handwriter"; version="3.1.1"; sha256="1gwxp5nsw38f368z586hixk4i7b87vg0fcmxxdl2zldawv1sx0v9"; depends=[doParallel dplyr foreach ggplot2 igraph lpSolve magick mc2d png purrr Rcpp RcppArmadillo reshape2 Rfast rjags stringr tidyr]; }; handyFunctions = derive2 { name="handyFunctions"; version="0.1.0"; sha256="0y476acqdm73y19k8s9c9vy8xryyjg16pay3vikslwccv7kgsigz"; depends=[ggplot2 rlang stringr]; }; handyplots = derive2 { name="handyplots"; version="1.1.3"; sha256="0pcl0iichdw2lkv8y00mv6n6c0rvrnsk75ka5lwm2g7b64pphsvk"; depends=[]; }; hans = derive2 { name="hans"; version="0.1"; sha256="0hh2nlzxs2kj93yb7yfm873m6nymjw5qmkin3qqn3acza6dr0k6q"; depends=[Rcpp]; }; @@ -11477,11 +11664,11 @@ in with self; { haploR = derive2 { name="haploR"; version="4.0.7"; sha256="1s8f556d9x5h76gyl4wggcx01f4qrx0fp5mz46yk2x9qmwiir89v"; depends=[DT httr plyr RCurl RJSONIO RUnit tibble XML]; }; haplotyper = derive2 { name="haplotyper"; version="0.1"; sha256="0pcshlh29c4zazhkcq4371kqh9inrbx494y5a1qb1k2c92fkax31"; depends=[]; }; haplotypes = derive2 { name="haplotypes"; version="1.1.3.1"; sha256="0w61ww76fq4iqzi6w9q2649925m5agnjaqhij40dwxyzsyqv9zjd"; depends=[ape network phangorn plotrix sna]; }; - happign = derive2 { name="happign"; version="0.2.2"; sha256="1nzp41rnc5xjdhl9234gg646qrl86w7w8m3q46zxzdh3r5vvg43z"; depends=[archive dplyr httr2 jsonlite sf terra units xml2]; }; + happign = derive2 { name="happign"; version="0.3.0"; sha256="0mg3w5djg0hg8x1826kqj3b75zyhibcpxrh5sp6w17pmamfif9a4"; depends=[archive dplyr httr2 jsonlite sf terra xml2]; }; happytime = derive2 { name="happytime"; version="0.1.0"; sha256="03iblwb6w2dh9sibfi4nlswidck13hzsn7123838zp4sxfnrp041"; depends=[]; }; hapsim = derive2 { name="hapsim"; version="0.31"; sha256="0jw6iw89d4y8wjy58biv40szp123ql7frz1mmdjdxljmwaby963h"; depends=[MASS]; }; - harbinger = derive2 { name="harbinger"; version="1.0.737"; sha256="0amqpx3pfvnx30dknxs4759b7c4qd4839zkrwf4ayg5klc06v7zd"; depends=[changepoint daltoolbox dplyr dtwclust forecast ggplot2 reticulate rugarch stringr strucchange tsmp TSPred]; }; - hardhat = derive2 { name="hardhat"; version="1.3.1"; sha256="0v0vvvyy075f0j9ppqkhys6w2k7zmfdg0v77l430582nhrvp99hf"; depends=[cli glue rlang tibble vctrs]; }; + harbinger = derive2 { name="harbinger"; version="1.0.787"; sha256="0ibmcwxlcdw4k7xd0bdnixz5fbnc6avj6jg7sd9ij5kir82xi03f"; depends=[changepoint daltoolbox dplyr dtwclust forecast ggplot2 hht rugarch stringr strucchange tsmp wavelets zoo]; }; + hardhat = derive2 { name="hardhat"; version="1.4.0"; sha256="1bdkn80ab25n1rn3n3x1b3gs157888fak3s7i7c0r54gzkfj7l26"; depends=[cli glue rlang tibble vctrs]; }; harmonicmeanp = derive2 { name="harmonicmeanp"; version="3.0.1"; sha256="11lxiafclihb49j6psqrdb143sz1xv9v45fafj8dfm8r2yr5hp1g"; depends=[FMStable]; }; harmonizer = derive2 { name="harmonizer"; version="0.3.2"; sha256="05iiph9zx4wllviiwr92bhiq24bmi62iq9wjn8j91dvascd6xh5i"; depends=[]; }; harmony = derive2 { name="harmony"; version="1.2.0"; sha256="1df7bb9ba3m0c44fhmh8cs4hlkh4fffjwm8rz7l87lf5pdy7sg56"; depends=[cowplot dplyr ggplot2 Matrix Rcpp RcppArmadillo RcppProgress RhpcBLASctl rlang tibble]; }; @@ -11497,12 +11684,13 @@ in with self; { hawkesbow = derive2 { name="hawkesbow"; version="1.0.3"; sha256="1jbwvzw4j8l7ywrbm4bhxvwp1b3j4ahi6fchmmvfjnx0da1d8163"; depends=[BH nloptr Rcpp RcppArmadillo]; }; hazer = derive2 { name="hazer"; version="1.1.1"; sha256="1d1qj6mamgxlvxq2hjik69zfzackjz5819iss98jf5gdbdngw41x"; depends=[]; }; hbal = derive2 { name="hbal"; version="1.2.12"; sha256="1r3wlgvjy33cr0vi0lpckim4cybz67lh44fi6d36hms8pirnl4rl"; depends=[estimatr generics ggplot2 glmnet gridExtra gtable nloptr Rcpp RcppEigen stringr]; }; - hbamr = derive2 { name="hbamr"; version="2.2.1"; sha256="0szxmzjwcz83s9qb062xl6nbxiwhk19d550ghjdb7xnv5p7zxmss"; depends=[BH dplyr future future_apply ggplot2 loo matrixStats plyr progressr RColorBrewer Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders tidyr]; }; + hbamr = derive2 { name="hbamr"; version="2.3.1"; sha256="1cch2l4dazny7p5hn16v0fp5mir10fy4qa8ibpgx3j2vi8w05c1x"; depends=[BH colorspace dplyr future future_apply ggplot2 loo matrixStats plyr progressr RColorBrewer Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders tidyr]; }; hbbr = derive2 { name="hbbr"; version="1.1.2"; sha256="09sph4vliyb63pd0abq02ix5wz373r70kgldw44fm279zq4z772h"; depends=[R2jags]; }; hbim = derive2 { name="hbim"; version="1.1.2"; sha256="1wgzxmbdzigh9q6q2s4vfh58p8whmyp0jckfga1li5cibqbvpaf0"; depends=[mvtnorm]; }; hbmem = derive2 { name="hbmem"; version="0.3-4"; sha256="0qhxc784zhilxhijlsykl10cqlxk9ll8m2cz9s1cmz76hlvrn0y9"; depends=[]; }; hbsae = derive2 { name="hbsae"; version="1.2"; sha256="0fg782gxivkkwhqvxf09j1q20f2dqm7bd1y9bp99fy7mg88zp0gn"; depends=[Matrix]; }; hcandersenr = derive2 { name="hcandersenr"; version="0.2.0"; sha256="0r8z8kb9hwvgcsxbd7arbmqclhwlbcjpnf3p9mp5vgyxm84iz515"; depends=[]; }; + hcci = derive2 { name="hcci"; version="1.1.0"; sha256="1rkbds3inpkhpvqb7rhvvakf9n0xf1yr74c3ywm35lwv6lj8pi21"; depends=[]; }; hce = derive2 { name="hce"; version="0.6.0"; sha256="0a9fdb3mx1rgnmdpjxjwgj0xlcd2cw43ydrj5mmld186w0c14kdz"; depends=[]; }; hchinamap = derive2 { name="hchinamap"; version="0.1.0"; sha256="1pia593g50zf3286f9g51slkvrpj1iy7lws9d7a3nqgb2v3yji1y"; depends=[htmlwidgets]; }; hcidata = derive2 { name="hcidata"; version="0.1.0"; sha256="16qzll0rhfc6szi9y5hxycq5462jm78kla70fnv1sqw7n34pvpg5"; depends=[Rdpack]; }; @@ -11510,21 +11698,23 @@ in with self; { hctrial = derive2 { name="hctrial"; version="0.1.0"; sha256="19li8i8hx0r3b63q80cnj6pr72rdbmykxq0kcfbn4azq3sdd046y"; depends=[clinfun GenBinomApps]; }; hdImpute = derive2 { name="hdImpute"; version="0.2.1"; sha256="1gs3205z3v7zvr2xqi4jv8xpmngpw41nk0kbz7wx3g4a5152hagq"; depends=[cli dplyr magrittr missRanger plyr purrr tibble tidyr tidyselect]; }; hda = derive2 { name="hda"; version="0.2-14"; sha256="0azfxyws7yslcqplfddmdp5ngk91j5h7llvrg77yh5z0kkd09j1b"; depends=[e1071]; }; + hdbayes = derive2 { name="hdbayes"; version="0.0.3"; sha256="19c8nxa30sngrz8z01xc2qxkyi4vjjnvqacphm318ianpwi7pi69"; depends=[bridgesampling callr enrichwith formula_tools fs instantiate mclust posterior]; }; hdbinseg = derive2 { name="hdbinseg"; version="1.0.2"; sha256="0q5lfczymrd4ln04lbdysncx6ylcsgrk69mhvm7jjk7pybrpm9wq"; depends=[doParallel foreach iterators Rcpp RcppArmadillo]; }; hdbm = derive2 { name="hdbm"; version="0.9.0"; sha256="0lvaica195chl6bb10wvvr7fbmh8b954fpxcm9r0gyp0d0i2a2w4"; depends=[Rcpp RcppArmadillo]; }; hdbma = derive2 { name="hdbma"; version="1.0"; sha256="0dj9hh6x5096znl7naga0qrx2fwr4crgjk7fyk5vxn6v1gl3llrh"; depends=[gplots lattice MASS R2jags survival]; }; hdcate = derive2 { name="hdcate"; version="0.1.0"; sha256="1jv6y38lzvm75s44n1pjvkkf5xcvrvclil318gvx54b16hvgggcg"; depends=[caret hdm KernSmooth locpol R6]; }; + hdcuremodels = derive2 { name="hdcuremodels"; version="0.0.1"; sha256="09ih9jlz7l4vcgqhpy9h5c8j19c5fdfn4hhka85as762lxxbkwrl"; depends=[doParallel flexsurv flexsurvcure foreach ggplot2 ggpubr glmnet knockoff mvnfast plyr survival]; }; hdd = derive2 { name="hdd"; version="0.1.1"; sha256="1xl5p56qrnvli2ga1p8xyvgsp17jyjm0xng5prigyngnpj327qpk"; depends=[data_table dreamerr fst readr]; }; hddplot = derive2 { name="hddplot"; version="0.59-2"; sha256="1q7mz7yxb4qvprj431kxv46cf9myckkycfbi6nzbkqw8mpwg02qy"; depends=[MASS multtest]; }; hdf5r = derive2 { name="hdf5r"; version="1.3.10"; sha256="0khj94z6ls6dnc6fpxwf1w93mk6f3z2p39mbihf0lz52jc36wjcj"; depends=[bit64 R6]; }; - hdf5r_Extra = derive2 { name="hdf5r.Extra"; version="0.0.5"; sha256="0mz7ilgs2zldvij7927l651lvwrb7zdfyakc55rvj9ij9nwnvpfx"; depends=[checkmate dplyr easy_utils hdf5r Matrix MatrixExtra rlang]; }; + hdf5r_Extra = derive2 { name="hdf5r.Extra"; version="0.0.6"; sha256="0k8rvwxr30pbx0svikfar40465ff2daipsf91yp2px7hrgb4y129"; depends=[checkmate dplyr easy_utils hdf5r Matrix MatrixExtra rlang]; }; hdflex = derive2 { name="hdflex"; version="0.2.1"; sha256="1f02gkgry8zilrk3sl4dl2jkbnvqn9700lv8k5zlh4cangq5jp9n"; depends=[checkmate dplyr Rcpp RcppArmadillo roll stringr]; }; hdfqlr = derive2 { name="hdfqlr"; version="0.6-2"; sha256="07lfr0vblahh3xhckwmzbmlja0janb73qkl4663mqgp6xk21jmi1"; depends=[]; }; hdi = derive2 { name="hdi"; version="0.1-9"; sha256="0k35zqz58lcx5p7ijhks4j7kqp553zggvrx4lh6k4s85lp601x22"; depends=[glmnet linprog MASS scalreg]; }; hdiVAR = derive2 { name="hdiVAR"; version="1.0.2"; sha256="1vvsi1irnbjnyliz9wh783kbjkyz8agfbrx10436fsf8x33d1qs8"; depends=[abind lpSolve]; }; hdm = derive2 { name="hdm"; version="0.3.2"; sha256="0spy2a23b6hxw6dm6zjqya066ar0224b64lckh6hrapha8kv4m1k"; depends=[checkmate Formula ggplot2 glmnet MASS]; }; hdme = derive2 { name="hdme"; version="0.6.0"; sha256="04s9r29yjirkzki6drcyglh2hd712habzdgpw0fnf3cy9960wv4v"; depends=[ggplot2 glmnet Rcpp RcppArmadillo Rdpack Rglpk rlang]; }; - hdmed = derive2 { name="hdmed"; version="1.0.0"; sha256="19n1m8wrzwf4lvmfw1bgyhymxv79irs341yfnhlc8znq4nm35yfh"; depends=[bama foreach freebird gcdnet genlasso hdi iterators MASS mediation ncvreg]; }; + hdmed = derive2 { name="hdmed"; version="1.0.1"; sha256="1vmyf9w5dwl8ayxsk7ykd13hl41j4a435771rkgmkmnm5fbcqaai"; depends=[bama foreach freebird gcdnet genlasso hdi iterators MASS mediation ncvreg]; }; hdnom = derive2 { name="hdnom"; version="6.0.3"; sha256="0n6wvjkg4dyq140a5grpnv526v2z5m7w726cnslrshcj31mngr46"; depends=[foreach ggplot2 glmnet gridExtra ncvreg penalized survival]; }; hdpGLM = derive2 { name="hdpGLM"; version="1.0.3"; sha256="1hh0d0dmnqxzsfar86bd0cqjj5jljyhw073zi59bmjyg4m0rjyyn"; depends=[coda data_table dplyr formula_tools ggjoy ggplot2 ggpubr ggridges Hmisc isotone LaplacesDemon magrittr MASS MCMCpack mvtnorm png purrr questionr Rcpp RcppArmadillo rprojroot stringr tibble tidyr tidyverse]; }; hdpca = derive2 { name="hdpca"; version="1.1.5"; sha256="0xcakpnp363lz98y3h87p1yhj0gs3f94gx2i8kz4mcizn1ll5xbd"; depends=[boot lpSolve]; }; @@ -11532,11 +11722,13 @@ in with self; { hds = derive2 { name="hds"; version="0.8.1"; sha256="1smg5ixrl7f2x3wn7s5i26dyadn5sigpf4jsk236z1bhnz617ax4"; depends=[survival tensor]; }; headliner = derive2 { name="headliner"; version="0.0.3"; sha256="1llq007b032q526csfxxwrrwaxkzgq8wl4g4cr65j8biwwynpaba"; depends=[dplyr glue lubridate purrr rlang tibble tidyr]; }; healthcare_antitrust = derive2 { name="healthcare.antitrust"; version="0.1.4"; sha256="1584j0ljvxp4b1ly0gxs9sdsnvvg96f91x94v5xngr4zrvsc21ga"; depends=[]; }; + healthdb = derive2 { name="healthdb"; version="0.3.1"; sha256="1iyijm0hwqz0dypqfvk84iyj0qbh16sq09mcs2srj98yywd4nnz4"; depends=[clock data_table dbplyr dplyr glue lubridate magrittr purrr rlang stringr tidyr]; }; + healthequal = derive2 { name="healthequal"; version="1.0.0"; sha256="1n96x414pa3khgbvxczavddg2fzfjc3awrpnzd460x12lhw8lfgn"; depends=[dplyr emmeans marginaleffects rlang srvyr survey]; }; healthfinance = derive2 { name="healthfinance"; version="0.1.0"; sha256="163zhdd5mqp0q872dmr3xzw2ppapnwp46rr7vkkfnglz635nxvpz"; depends=[ggplot2 lubridate readr scales shiny tibble]; }; - healthyAddress = derive2 { name="healthyAddress"; version="0.2.0"; sha256="0lw8r4cw1axgkb23ikzsn7jkqplp8cpydmww1pklp3cp4arkddmy"; depends=[data_table fastmatch fst hutils hutilscpp magrittr qs]; }; + healthyAddress = derive2 { name="healthyAddress"; version="0.4.2"; sha256="1fbqka0gg7l11n6czb2z2480r7v5ispn54a17xjad547ndy12n5v"; depends=[data_table fastmatch fst hutils hutilscpp magrittr qs]; }; healthyR = derive2 { name="healthyR"; version="0.2.1"; sha256="0wlw6sd187sw5ar58c4a5yz9fw0bc044cik1xsq54ipp4xprlnxp"; depends=[cowplot dplyr ggplot2 lubridate magrittr plotly purrr rlang scales sqldf stringr tibble timetk writexl]; }; healthyR_ai = derive2 { name="healthyR.ai"; version="0.0.13"; sha256="0qck4118f0kg9rfnmjc14qh7kdzvxh28rdlydhz8i5j91a6731a4"; depends=[broom dials dplyr forcats ggplot2 ggrepel h2o magrittr modeltime parsnip purrr recipes rlang tibble tidyr tune workflows yardstick]; }; - healthyR_data = derive2 { name="healthyR.data"; version="1.0.3"; sha256="1bbxy7x7q1jn5l48li3pfiqisxrfw87nql20v5c2f06m67mn2mq8"; depends=[dplyr janitor rlang]; }; + healthyR_data = derive2 { name="healthyR.data"; version="1.1.0"; sha256="025pgadi0rgwz0yvkx3mgf6r66sk2phmsmvgpykwd6jxyfwix2yk"; depends=[dplyr httr2 janitor rlang stringr tidyr]; }; healthyR_ts = derive2 { name="healthyR.ts"; version="0.3.0"; sha256="1h8x47k239f8mmylpiydw7yf9r0synrzjhdk12a3nnbxbajn6iab"; depends=[cowplot dplyr forcats ggplot2 hardhat lubridate magrittr modeltime parsnip plotly purrr recipes rlang stringi tibble tidyr timetk workflowsets]; }; healthyverse = derive2 { name="healthyverse"; version="1.0.4"; sha256="1h3d8wq6if1nkqc1d3n6y0g7i7xsvx9ci09z3jvhqx62f464ybgm"; depends=[cli crayon dplyr healthyR healthyR_ai healthyR_data healthyR_ts magrittr purrr rlang rstudioapi tibble tidyAML TidyDensity]; }; heapsofpapers = derive2 { name="heapsofpapers"; version="0.1.0"; sha256="1b88ff4j6rh0qif43iyb12wipkkjmp5qx33qfzgffr5m54df4kfy"; depends=[aws_s3 curl dplyr fs magrittr rlang scales]; }; @@ -11546,18 +11738,21 @@ in with self; { heatmapFlex = derive2 { name="heatmapFlex"; version="0.1.2"; sha256="0va8ac2wf1mzm6zamhfpid3xkm7310c6b695c5wbc705nwijnd9q"; depends=[Biobase Heatplus RColorBrewer]; }; heatmaply = derive2 { name="heatmaply"; version="1.5.0"; sha256="1crdm7avxv3zx59byz2fqbcw95728crwf9cckjb9gal1065xv95c"; depends=[assertthat colorspace dendextend egg ggplot2 htmlwidgets magrittr plotly RColorBrewer reshape2 scales seriation viridis webshot]; }; heatwaveR = derive2 { name="heatwaveR"; version="0.4.6"; sha256="172qg8dgyn5lbwmyq8dxdccxr4aqaq6iixn5dqb4fy99ahgdbhyv"; depends=[data_table dplyr ggplot2 lubridate plyr Rcpp RcppArmadillo RcppRoll tibble]; }; + heck = derive2 { name="heck"; version="0.1.0"; sha256="0mpfxkzk171qql9jx8byaiyinyb1ibla11jzljlw9pkdf4gs6m4b"; depends=[]; }; heddlr = derive2 { name="heddlr"; version="0.6.0"; sha256="0ixmcgvfbq4hi3wv1fyzpwacmxmixsw5yq6mq5xygk6ji03m1v23"; depends=[rlang utf8 yaml]; }; hedgehog = derive2 { name="hedgehog"; version="0.1"; sha256="1mvjnm2zlc4pvw9vnhxr0dj1g1sfqvlrnnhcipzfbvr147yan9l5"; depends=[rlang testthat]; }; heemod = derive2 { name="heemod"; version="1.0.1"; sha256="09kj8gy74dklkbvxxh95qa5s7iaksvyamggppcpnp5c115625rrb"; depends=[dplyr ggplot2 glue lifecycle memoise mvnfast purrr rlang tibble vctrs]; }; + heimdall = derive2 { name="heimdall"; version="1.0.3"; sha256="02lpyiphzyirmi6fl0l4k3vm5b3gvw1f8ha5mmsrkcnnvixakb2y"; depends=[caret daltoolbox ggplot2]; }; heims = derive2 { name="heims"; version="0.4.0"; sha256="0vnq31jwn09grni4gdhf1hzd87b62as4f65b2qw7ky6mi38ahr5d"; depends=[bit64 data_table fastmatch hutils lubridate magrittr]; }; + heiscore = derive2 { name="heiscore"; version="0.0.1"; sha256="0bj1li0m4mpd04f4zqh1dj4v593cv5nvv17n2yasjbqrymi15mr5"; depends=[dplyr fmsb ggplot2 ggpubr magrittr RColorBrewer rlang shiny shinythemes stringr tibble tidyr]; }; helixvis = derive2 { name="helixvis"; version="1.0.1"; sha256="113rnpnrcnw18ks78fgq79zdrw3kmpzpimlc45gvj0za2fbyci3p"; depends=[ggforce ggplot2 rlang]; }; hellno = derive2 { name="hellno"; version="0.0.1"; sha256="1j787rw9hh75bvkckmlz5xkgwc22gd7si3mgjd7v60dd6lykfa88"; depends=[]; }; helloJavaWorld = derive2 { name="helloJavaWorld"; version="0.0-9"; sha256="1a8yxja54iqdy2k8bicrcx1y3rkgslas03is4v78yhbz42c9fi8s"; depends=[rJava]; }; hellorust = derive2 { name="hellorust"; version="1.2.0"; sha256="0x2lnbrii9z4kyd810rphcip9wpx7ibqx9b4fs5c5msrqa03amk3"; depends=[]; }; helminthR = derive2 { name="helminthR"; version="1.0.10"; sha256="0ssw0smxc5zx3d189fq8c6kdg6d7db1sd5iblhz54pg41j9fvqhq"; depends=[httr magrittr plyr rvest taxize xml2]; }; helsinki = derive2 { name="helsinki"; version="1.0.6"; sha256="1hsmxnfzbi8xvqz97rmq225w9prhxc558slmfxg03y5wpjqdpq4a"; depends=[curl dplyr httr jsonlite purrr sf xml2]; }; - hemispheR = derive2 { name="hemispheR"; version="1.1.3"; sha256="13h6x73dzz7azzw251qqnqnva7bpagq78xcv88fbys9fjfy6w7bd"; depends=[autothresholdr dismo dplyr jpeg scales sf terra tidyr]; }; - heplots = derive2 { name="heplots"; version="1.6.2"; sha256="09s3ys12p6rzyaza9dwvz83yifkbhkvfwcb0cwb3swd70zh9biml"; depends=[broom car magrittr MASS purrr rgl tibble]; }; + hemispheR = derive2 { name="hemispheR"; version="1.1.4"; sha256="1x372rbi112l5hdmlkbn5x90h8a6y71zngdlfn1p27c10klwaspy"; depends=[autothresholdr dismo dplyr jpeg scales sf terra tidyr]; }; + heplots = derive2 { name="heplots"; version="1.7.0"; sha256="0hkwfg2xfsmvxnzr2jdfxn93ny325rkhc2cakr4hvddvg65dckfx"; depends=[broom car magrittr MASS purrr rgl tibble]; }; here = derive2 { name="here"; version="1.0.1"; sha256="0srlr8h8qmr0wrmp7gs4g2ry5dni2hx8n947bik3s3a26f091v88"; depends=[rprojroot]; }; hereR = derive2 { name="hereR"; version="1.0.0"; sha256="0la67qdsq72x8k19v27g73fh6w04fdgfj1cxbd3a6w1sfvjvvy6z"; depends=[crul curl data_table flexpolyline jsonlite sf stringr]; }; heritability = derive2 { name="heritability"; version="1.4"; sha256="053fqjc8772gqhxnm2gn7yz747432kizn5q5060g5bd77v15jlhp"; depends=[MASS]; }; @@ -11575,10 +11770,9 @@ in with self; { hettreatreg = derive2 { name="hettreatreg"; version="0.1.0"; sha256="092xd2yndg5n5shxmcyn2gh6a6w1i1497cvj009ih3ax8hk3crf0"; depends=[]; }; hettx = derive2 { name="hettx"; version="0.1.3"; sha256="15i9n2fcfbkv11qlgh4gsjvfnzzziwbcn8izzxw2d0kbdhhk7h8c"; depends=[doParallel dplyr foreach formula_tools ggplot2 MASS moments mvtnorm plyr purrr quantreg tidyr]; }; hetu = derive2 { name="hetu"; version="1.0.7"; sha256="1ml3jzfc71j0d7a7yn97sbfzlpdpg46jpjcn6xbnh17xrqc1mv2a"; depends=[checkmate lubridate]; }; - heumilkr = derive2 { name="heumilkr"; version="0.1.0"; sha256="1m50lnvz2pljmbsc99z4q47nqd0k046zmf5r4vi6krfzyyx1g0lm"; depends=[cpp11 ggplot2 rlang]; }; + heumilkr = derive2 { name="heumilkr"; version="0.2.0"; sha256="0zpjmsk0vzz9x5nngznma3znpjlhjihxq0i9hrjx4nzbbbayf9qp"; depends=[cli cpp11 ggplot2 rlang xml2]; }; heuristica = derive2 { name="heuristica"; version="1.0.3"; sha256="1j88sviy6yabh5prab0f1snnicbg843kbwyawakj3xx3p43v23lb"; depends=[Hmisc]; }; heuristicsmineR = derive2 { name="heuristicsmineR"; version="0.3.0"; sha256="0w4f7xpz2342k38b5a7fs6fq50045hh2836390zg36nqdapg8vlv"; depends=[BH bupaR data_table DiagrammeR dplyr ggplot2 ggthemes magrittr petrinetR processmapR purrr Rcpp rlang scales stringr tidyr]; }; - hexFinder = derive2 { name="hexFinder"; version="0.8.2"; sha256="184fv8xbgaygsb8bxd0gzi1r5girc2i0s8816i7y5pb1ps8bqvzp"; depends=[ggplot2 glue hexSticker httr2 jsonlite magick pkgsearch purrr stringr]; }; hexSticker = derive2 { name="hexSticker"; version="0.4.9"; sha256="0d9sz2cshn4lq18kd9fkgvjm3v29h0k22b6228rq2q3zhxi97ra0"; depends=[ggimage ggplot2 hexbin showtext sysfonts]; }; hexView = derive2 { name="hexView"; version="0.3-4"; sha256="01hiqyibsd4as7jcklzg09pl12la341mg561vn16z4jzdarfvkfc"; depends=[]; }; hexbin = derive2 { name="hexbin"; version="1.28.3"; sha256="0pyy97bh9xf9hijg3iw1z4ri01571r1fx7xqm3fjkzx4q48kbcqf"; depends=[lattice]; }; @@ -11596,10 +11790,10 @@ in with self; { hgwrr = derive2 { name="hgwrr"; version="0.3-0"; sha256="0m3h5zwdnj4l7i6nh0mrjj4wprajgazninzffxpy14g7fy907ifn"; depends=[Rcpp RcppArmadillo]; }; hhh4contacts = derive2 { name="hhh4contacts"; version="0.13.3"; sha256="1hxdf8mkcaimglpq6z2gk523w7xh3ih0c2m9mlqbgrgnysb22biy"; depends=[sp surveillance]; }; hhi = derive2 { name="hhi"; version="1.2.0"; sha256="1yl52c3nqdi8v60sr01l0vv8359803dm2i4c9ifazgj3h3a4h0yp"; depends=[ggplot2]; }; - hhsmm = derive2 { name="hhsmm"; version="0.3.6"; sha256="0b7bjvhyva3858dv01s6r891jkk14gm01hjqsab32m9w1b4r477p"; depends=[CMAPSS magic MASS mice mvtnorm progress Rcpp Rdpack splines2]; }; + hhsmm = derive2 { name="hhsmm"; version="0.4.0"; sha256="15lqb4k8q0c9w2fi03ndrzs5vdnh7r5wa4ifpzqvggw5vrnfmfy8"; depends=[CMAPSS magic MASS mice mvtnorm progress Rcpp Rdpack splines2]; }; hht = derive2 { name="hht"; version="2.1.6"; sha256="13q30difb84byy62rrkxq2hjjl1526pn8j4qvhm5g3cgivvby5ci"; depends=[EMD fields]; }; hibayes = derive2 { name="hibayes"; version="3.0.3"; sha256="04vkvqha82cpmjflxir83208d9mxwip7wlbc3zd12apvrg2c91x6"; depends=[BH bigmemory CMplot Matrix Rcpp RcppArmadillo RcppProgress stringr]; }; - hicp = derive2 { name="hicp"; version="0.4.2"; sha256="0pqghxvby1ppjg1qx3wigak997a4rr9lpkxdwp2nq5z277znnrbl"; depends=[data_table restatapi]; }; + hicp = derive2 { name="hicp"; version="0.5.1"; sha256="1xzjlwbmibzs362k6c9y346scqvx3lf6n3pnq6bhbklwfw8jd3hz"; depends=[data_table restatapi]; }; hiddenf = derive2 { name="hiddenf"; version="2.0"; sha256="0shc1kfiq527mkc5i97zcm51hsvknnhjg7dyfvbfqyk145v6sz00"; depends=[]; }; hidecan = derive2 { name="hidecan"; version="1.1.0"; sha256="08yhjgmcmrnrm6rm0vlzvizadvywcs1p6mchw1synxvclfaxyi28"; depends=[dplyr ggnewscale ggplot2 ggrepel purrr shiny tibble tidyr viridis vroom]; }; hierBipartite = derive2 { name="hierBipartite"; version="0.0.2"; sha256="1f6agxrv363wksi33b29v42hys90351ninb4li9m52n0kzv25m1f"; depends=[irlba magrittr]; }; @@ -11610,7 +11804,6 @@ in with self; { highDmean = derive2 { name="highDmean"; version="0.1.0"; sha256="0z81iw1nb8y4pvmhk8ay9pq4kvqxwxwv8q6p47hy8s2b465sfy1f"; depends=[]; }; highMLR = derive2 { name="highMLR"; version="0.1.1"; sha256="0jkv6blkzdnn263wxy7p0hspgf5fchl5fbmzpqb5lfvl2f3pi3j9"; depends=[coxme dplyr gtools missForest mlr3 mlr3learners R6 survival tibble]; }; highOrderPortfolios = derive2 { name="highOrderPortfolios"; version="0.1.1"; sha256="0qjmxiv5dcpgyl5c9vbbizwwg4lpppc9z09rf4c4lf0dfrcj4c5i"; depends=[ECOSolveR fitHeavyTail lpSolveAPI nloptr PerformanceAnalytics quadprog]; }; - highSCREEN = derive2 { name="highSCREEN"; version="0.4"; sha256="1nd4jayfhz89kpk4i7s3n3wlza1ik4w3gspplnjmfz951f8i3wlg"; depends=[gplots]; }; highTtest = derive2 { name="highTtest"; version="1.3"; sha256="0w7114qnywpd3wcnxhpkmv0j7hqip25p6wdigg505k0gywanr7fp"; depends=[]; }; highcharter = derive2 { name="highcharter"; version="0.9.4"; sha256="02yyzfhzgkrp8hgdp2gyqrrvxzh9wqn3c90lyd9nlavn4qn4789z"; depends=[assertthat broom dplyr htmltools htmlwidgets igraph jsonlite lubridate magrittr purrr quantmod rjson rlang rlist stringr tibble tidyr xts yaml zoo]; }; highfrequency = derive2 { name="highfrequency"; version="1.0.1"; sha256="0jxkmgd3sfipz1z37w9flwy8i94q6vxwlxyaflfbprwlskmlnakd"; depends=[data_table numDeriv quantmod Rcpp RcppArmadillo RcppRoll robustbase Rsolnp sandwich xts zoo]; }; @@ -11618,7 +11811,7 @@ in with self; { highlightHTML = derive2 { name="highlightHTML"; version="0.2.5"; sha256="0j3zrvil7k5wfsbgfj2b4nbx77qsj3b4makv5angcf8s59p7q80r"; depends=[]; }; highlighter = derive2 { name="highlighter"; version="0.1"; sha256="1ksgqx2ryg5lfka93yns5cphnf4xc4v55ncmpisydjbcpzd2105c"; depends=[cli glue htmltools htmlwidgets rlang]; }; highmean = derive2 { name="highmean"; version="3.0"; sha256="1lq7z0l1737j4wvsy7951405afylyywp7vf2i7girzh459fdfzpc"; depends=[MASS mnormt mvtnorm]; }; - highr = derive2 { name="highr"; version="0.10"; sha256="0yrlpjs8qzq1d7iy4gypnf4x1gvxq6vaghkdh1kfv433yqgvqmgc"; depends=[xfun]; }; + highr = derive2 { name="highr"; version="0.11"; sha256="19z0gwdy46z6gb46b3fs2ljxa2cn0bpvx7aam0jk75h180l183g9"; depends=[xfun]; }; highriskzone = derive2 { name="highriskzone"; version="1.4.9"; sha256="0sg3a99pb2559chalxh66zv9mvwbgfx64vp1209vbhbx3sya48r2"; depends=[deldir fields ks maps Matrix mvtnorm polyclip spatstat spatstat_explore spatstat_geom spatstat_random splancs]; }; highs = derive2 { name="highs"; version="0.1-10"; sha256="1vjmzbfydlm434fa1mkwwfcdhmn6sq4ppib26nxfa9zakr7h7q2c"; depends=[checkmate Rcpp]; }; hightR = derive2 { name="hightR"; version="0.3.0"; sha256="0d4p9qcj7z0ayk4nb3pxnfwww29d7ks0jzavxsbz6m82g7x1pmyh"; depends=[]; }; @@ -11655,19 +11848,18 @@ in with self; { hmcdm = derive2 { name="hmcdm"; version="2.1.1"; sha256="0w3ldx8bwcqbc0mv1f8yiby08w4s37jc7gp3p53pmldqk65s7qfb"; depends=[bayesplot progress Rcpp RcppArmadillo rstantools]; }; hmclearn = derive2 { name="hmclearn"; version="0.0.5"; sha256="0zalvgnibd1kygryqcah5d008y6a0nxpy61yyiqsriw89r01jyjk"; depends=[bayesplot MASS mvtnorm]; }; hmeasure = derive2 { name="hmeasure"; version="1.0-2"; sha256="0l4nlny532kddiaa1nmgd37971whhwzb54mb1pvbwax7fsg6hmhw"; depends=[]; }; - hmer = derive2 { name="hmer"; version="1.5.6"; sha256="1rnav6vd67daf4v8x7038zvakx0hh7fgcmldsipknbkilm49vdh7"; depends=[cluster dplyr GGally ggbeeswarm ggplot2 isoband lhs MASS mvtnorm pdist purrr R6 rlang stringr tidyr viridis]; }; + hmer = derive2 { name="hmer"; version="1.6.0"; sha256="0536bdrg4cw4kqmx6czzh63b8wia6fhm02fvjv9irlmxqhmy0mxa"; depends=[cluster dplyr GGally ggbeeswarm ggplot2 isoband lhs MASS mvtnorm pdist purrr R6 rlang stringr viridis]; }; hmm_discnp = derive2 { name="hmm.discnp"; version="3.0-9"; sha256="1cwsgjf258hwyf12sn54iqiliikmadbknlvhclhmqrr2vvj7561f"; depends=[nnet]; }; hmmTMB = derive2 { name="hmmTMB"; version="1.0.2"; sha256="1vrjkq5vv70wjvg588w2q7sd8qhnp4iz3swx8yc3x8w7zpwkf0hn"; depends=[CircStats ggplot2 MASS Matrix mgcv optimx R6 RcppEigen stringr TMB tmbstan]; }; - hmmm = derive2 { name="hmmm"; version="1.0-4"; sha256="1sbr85lcmcw3lv0ygqwfbarr91dp3br1xnlygy49145cvl93nfci"; depends=[MASS mvtnorm nleqslv quadprog]; }; + hmmm = derive2 { name="hmmm"; version="1.0-5"; sha256="0fknljb97x0nkj904dxx98p0mmx238ak33cy3j4d0626a2589kyg"; depends=[MASS mvtnorm nleqslv quadprog]; }; hmmr = derive2 { name="hmmr"; version="1.0-0"; sha256="1m0jmw0i66hm5z5rycvpdmasq8zhgsz91km491n0n923mm480hmh"; depends=[depmixS4]; }; hms = derive2 { name="hms"; version="1.1.3"; sha256="10h2k5j97fggq3hc0qzxv1q9821y21m326v3x99zsvpl1b3g89p6"; depends=[lifecycle pkgconfig rlang vctrs]; }; hmsr = derive2 { name="hmsr"; version="1.0.1"; sha256="0zznji4cxkgbww7cyxad68bxmqf18y76wkyw9y03d97871jr0sny"; depends=[GA msm uuid]; }; hmstimer = derive2 { name="hmstimer"; version="0.2.1"; sha256="178jnxhbpa5y2k2cw3w7czyapb23n6yygmymijvn3pzcgx607y3v"; depends=[hms]; }; hnp = derive2 { name="hnp"; version="1.2-6"; sha256="12cbc353ipr2rcc93skf1766g38j1pvpdkqk3cswv0cxsjl2x7pl"; depends=[MASS]; }; - hoardeR = derive2 { name="hoardeR"; version="0.9.4-2"; sha256="1jdxfalmi4p7gwb7jndxbzbklv1fk0c57shnl4jz27s81lndg437"; depends=[bamsignals Biostrings data_table GenomicRanges GenomicTools_fileHandler httr IRanges KernSmooth knitr MASS R_utils RCurl rmarkdown Rsamtools S4Vectors seqinr stringr XML]; }; + hoardeR = derive2 { name="hoardeR"; version="0.10"; sha256="0maqypigq2942mqbnr7a11iryv6xhhfrnyarqw3r8z5zimjy1y7p"; depends=[bamsignals Biostrings data_table GenomicRanges GenomicTools_fileHandler httr IRanges KernSmooth knitr MASS R_utils RCurl rmarkdown Rsamtools S4Vectors seqinr stringr XML]; }; hoardr = derive2 { name="hoardr"; version="0.5.4"; sha256="0dws91z1a25ynkdjj3f1lgp6qbgvfgnqi0mw14f4b13m670il0sf"; depends=[digest R6 rappdirs]; }; hockeystick = derive2 { name="hockeystick"; version="0.8.4"; sha256="0l5sk4x66zalmznksf9c099jn9i2i90bs57h2f44z105hzpdi606"; depends=[dplyr ggplot2 jsonlite lubridate patchwork RColorBrewer readr rvest scales tibble tidyr treemapify]; }; - holdem = derive2 { name="holdem"; version="1.2"; sha256="0mcb4civ4p7apm7kfl88apvb4yznsmn4hggfggmjhs046g6bi2p7"; depends=[]; }; holiglm = derive2 { name="holiglm"; version="1.0.0"; sha256="02i6smmwmvbkx351ahjzz247kky377r6ara06c5wk5jrfsfjbbr7"; depends=[checkmate MASS ROI ROI_plugin_ecos slam SuppDists]; }; holland = derive2 { name="holland"; version="0.1.2-1"; sha256="0f5nr17rmx1m3g4aw6c1f82xdj2ll5nr8slm8ha80cg2i6a90v10"; depends=[MplusAutomation mvtnorm]; }; holodeck = derive2 { name="holodeck"; version="0.2.2"; sha256="1phaj4yw01301rgcdv4w44q6y5vxwggmks0xdbvg9i2ak3kjcyfp"; depends=[assertthat dplyr MASS purrr rlang tibble]; }; @@ -11691,7 +11883,7 @@ in with self; { housingData = derive2 { name="housingData"; version="0.3.0"; sha256="0ngfx2vjx705xixzpz0rgx1481cr2szj4yfi5g7ma1hhivddl7d1"; depends=[]; }; hover = derive2 { name="hover"; version="0.1.1"; sha256="09lpga8a87h6fyg0j3av4xjna300ifsx2ygzwsnvh2l1d70fwf8m"; depends=[htmltools shiny]; }; howManyImputations = derive2 { name="howManyImputations"; version="0.2.5"; sha256="1vcsf8l2hflr3csjrrgv4883hz0gb3vkaa26943wi8vss7h2lb4d"; depends=[mice]; }; - howler = derive2 { name="howler"; version="0.2.1"; sha256="00l1952hf2ngypg67y88rgn0xiicsjsyl6xf8r9r65ar9k0fl3yb"; depends=[htmlwidgets shiny]; }; + howler = derive2 { name="howler"; version="0.3.0"; sha256="1l66nkvca5ig7l133mdfs8g3x0s6agq3jkn3c358ypvls78v4dv8"; depends=[htmlwidgets shiny]; }; howzatR = derive2 { name="howzatR"; version="1.0.1"; sha256="00mv9qkn4ndp74jwqkjwqmy7j8ywhpl4ycg81yw3xlabbnqb292j"; depends=[magrittr rlang]; }; hpa = derive2 { name="hpa"; version="1.3.3"; sha256="1p3bi6syn211wp2xa90mcxsl11gk8w9rpn2axlxasnqc4c3ag64x"; depends=[Rcpp RcppArmadillo RcppParallel]; }; hpackedbubble = derive2 { name="hpackedbubble"; version="0.1.0"; sha256="1br7q4958f1zgvisglsaf41nz2ahnqi3bzazvlfnmk3nq03cb1ri"; depends=[htmlwidgets]; }; @@ -11720,21 +11912,22 @@ in with self; { html5 = derive2 { name="html5"; version="1.0.2"; sha256="1icji4y2x7bn4nrsf99n8b6g5v053bb9hpwvmp8bf5wh63d1ns8l"; depends=[]; }; htmlTable = derive2 { name="htmlTable"; version="2.4.2"; sha256="039nnxnvw5l284n7w8q0hnplm0b58nwhsrpjfi5asg61f9hxv0va"; depends=[checkmate htmltools htmlwidgets knitr magrittr rstudioapi stringr]; }; htmldf = derive2 { name="htmldf"; version="0.6.0"; sha256="19brwxqnsxzvgsqq3gsjkcyag9ag3xa3mrl5c4s7x48xx2knfh9q"; depends=[cld3 dplyr httr lubridate magrittr processx progress R_utils ranger rvest stringr tibble tidyr urltools xml2]; }; - htmltools = derive2 { name="htmltools"; version="0.5.7"; sha256="11mkk26pjck6r2w2nv6niy90c6l13g64zi01s3j4jgq634kdic7c"; depends=[base64enc digest ellipsis fastmap rlang]; }; + htmltools = derive2 { name="htmltools"; version="0.5.8.1"; sha256="0xpi2g87vwanp0kbs22j90pa2bban3nwrdjdb3257hq6xj9j5xpr"; depends=[base64enc digest fastmap rlang]; }; htmlwidgets = derive2 { name="htmlwidgets"; version="1.6.4"; sha256="1l0f7bz2icixsrgg5fg8k09mv0nq9vn5ch1fywkaqpa8605qzc3w"; depends=[htmltools jsonlite knitr rmarkdown yaml]; }; hts = derive2 { name="hts"; version="6.0.2"; sha256="06mmxdm7a2fb1r4mb2x12b00rnkaxlrmlkv5yizr3yixmn4is9wb"; depends=[forecast Matrix Rcpp RcppEigen SparseM]; }; htsr = derive2 { name="htsr"; version="2.1.4"; sha256="1z4s3xn82fq3gh2fp7ys0vifmpgxksi0hvjj9whlkjv2dmsnzqyz"; depends=[DBI dplyr fs ggplot2 lubridate purrr Rcpp readr readxl RSQLite shiny shinyFiles stringr tibble waiter WriteXLS]; }; + httk = derive2 { name="httk"; version="2.3.1"; sha256="1ws9bxrl0r59nni6avvr7qgs866p90l88x9xyfw2s90j5q2zzil5"; depends=[data_table deSolve ggplot2 magrittr msm mvtnorm purrr Rdpack survey truncnorm]; }; httpRequest = derive2 { name="httpRequest"; version="0.0.11"; sha256="0qsi01fcrkps0h6r7l3l5ph3zlq9gscmq19b9ah2q2qlcv3hk4cf"; depends=[]; }; httpcache = derive2 { name="httpcache"; version="1.2.0"; sha256="026sl19301al3sid9hlwq8jz5b0zvh9a4n3cl4niqvc2b57h133r"; depends=[digest httr]; }; httpcode = derive2 { name="httpcode"; version="0.3.0"; sha256="0xig0rvc81hg7mw0iq9s0an1nw24fg0kfs2p2n6dzhwl9w506fjr"; depends=[]; }; - httpgd = derive2 { name="httpgd"; version="2.0.1"; sha256="14i358r0pix6xl0i3byarasa6sry3qcajj6p49rlk7p4gw4lh85c"; depends=[AsioHeaders cpp11 unigd]; }; + httpgd = derive2 { name="httpgd"; version="2.0.2"; sha256="0y7c98a9xyk64wb81kmbdx1s04s70m5yv8d2nkf716mjq7mn89sg"; depends=[AsioHeaders cpp11 unigd]; }; httping = derive2 { name="httping"; version="0.2.0"; sha256="0hdcf51yak8yagy4xj9cyck934lgmvpkd08jvlql33ir5mqvvv3i"; depends=[httpcode httr jsonlite magrittr pryr]; }; httpproblems = derive2 { name="httpproblems"; version="1.0.1"; sha256="0zd683xd9f9hz6dxm4bmic54jqjcabr23kwl6afsmdjwnrwwsn06"; depends=[]; }; httptest = derive2 { name="httptest"; version="4.2.2"; sha256="0c370jxkd9dzqg5pdf2mcv2kjzr9zp9qai9riivjgygj6jhlcjav"; depends=[curl digest httr jsonlite testthat]; }; - httptest2 = derive2 { name="httptest2"; version="1.0.0"; sha256="0qgkw93a1cv1n81jvwp8i64snaac84rbr76mg8c5b4a2f4fhysi1"; depends=[digest httr2 jsonlite rlang testthat]; }; - httpuv = derive2 { name="httpuv"; version="1.6.14"; sha256="10fi7j8rpa55l7bdygxl608i6f927ws2y1lv4qz8g6dx4spaq9j0"; depends=[later promises R6 Rcpp]; }; + httptest2 = derive2 { name="httptest2"; version="1.1.0"; sha256="0vj6ynxc2xdq4xhl6df8aa3582s7jf5m71hxqxhjsjfqdzm72dv8"; depends=[digest httr2 jsonlite rlang testthat]; }; + httpuv = derive2 { name="httpuv"; version="1.6.15"; sha256="1l2y435i3dvq7fnalpvc7h5wh0sc5clygdvcvghz77d34cvfsvay"; depends=[later promises R6 Rcpp]; }; httr = derive2 { name="httr"; version="1.4.7"; sha256="0fisvq3zydmqagn7lj6x98zxkcl7l95gfydl27zkigb7zg1fcm8m"; depends=[curl jsonlite mime openssl R6]; }; - httr2 = derive2 { name="httr2"; version="1.0.0"; sha256="0jaajfr1hr6bzb1vz2nw2csl2l09kbq619vsq5yrlchcarpjv1fb"; depends=[cli curl glue lifecycle magrittr openssl R6 rappdirs rlang vctrs withr]; }; + httr2 = derive2 { name="httr2"; version="1.0.1"; sha256="1cpi2yr66g0nwd5ybz6254ivggvxql0bas2hwpakrcw1161jvs9k"; depends=[cli curl glue lifecycle magrittr openssl R6 rappdirs rlang vctrs withr]; }; hubeau = derive2 { name="hubeau"; version="0.5.0"; sha256="1fzy24wx93rc9niiksir0hys2f1slafrng9rkwmjaf51lsj0n1qw"; depends=[dplyr httr magrittr purrr tibble urltools]; }; hudr = derive2 { name="hudr"; version="1.2.0"; sha256="1kvqbgyhyr4lvzqvfsa1597px8ydqpacphnm902hchqv5qvbxgm4"; depends=[data_table httr janitor magrittr]; }; hues = derive2 { name="hues"; version="0.2.0"; sha256="062i7yc16nmnp15c1jh4xffw2lpklp36wkn1yvagh186ahnlgffx"; depends=[colorspace]; }; @@ -11758,7 +11951,7 @@ in with self; { hwriter = derive2 { name="hwriter"; version="1.3.2.1"; sha256="1wxnv8h9cs65m3z01dpnnkgn2cpwfsck70g1jz9nbkr7mdaa4bzd"; depends=[]; }; hwsdr = derive2 { name="hwsdr"; version="1.1"; sha256="1dfrqcd0nccrsv01hsvp2xic9nfhsqmvl7cqvv28amayqyv3lizk"; depends=[dplyr httr sf terra]; }; hwwntest = derive2 { name="hwwntest"; version="1.3.2"; sha256="1j6lpbrf3jp3nrz9m0s74inkr2ww4g8ajz30qjhlfwmacww0hdsg"; depends=[polynom wavethresh]; }; - hySAINT = derive2 { name="hySAINT"; version="1.2.0"; sha256="15rzlk599b5kanfqx4g9aaxnxvxk6nl6mlhvs97nn2aary91rci4"; depends=[energy Matrix pracma selectiveInference SIS VariableScreening]; }; + hySAINT = derive2 { name="hySAINT"; version="1.2.1"; sha256="1mmw0k63rci7w19livfv7mnsrqjwk0cc51wlyn58ksnf9bbqphch"; depends=[energy Matrix pracma selectiveInference SIS VariableScreening]; }; hySpc_testthat = derive2 { name="hySpc.testthat"; version="0.2.1"; sha256="12za828sw2al3aa236ksmnwxpy2sqw8gl8b3p3vvrjk1l31l1qcm"; depends=[testthat]; }; hybridModels = derive2 { name="hybridModels"; version="0.3.7"; sha256="0fj3dvv7s1hlicvlb077pkhbj894brzgdxhp67jck9zpy2qymzxq"; depends=[doParallel doRNG foreach ggplot2 GillespieSSA reshape2 stringr]; }; hybridogram = derive2 { name="hybridogram"; version="0.3.2"; sha256="14p2gwmgcaf84aycdc2a51frw2pccrffsjk8n83gvj2ans8phrr9"; depends=[pheatmap]; }; @@ -11767,8 +11960,9 @@ in with self; { hydflood = derive2 { name="hydflood"; version="0.5.7"; sha256="18gw2jipssaid5q004gyvfk56vgvajv69kd0f6zh2fp7sgq5w33d"; depends=[hyd1d raster Rdpack sf terra]; }; hydra = derive2 { name="hydra"; version="0.1.0"; sha256="0r3r8cds4h15narawxhzkrvgnf00vlgrgqdgnmbzjyyb1dmry8wn"; depends=[]; }; hydraulics = derive2 { name="hydraulics"; version="0.7.0"; sha256="0aw84gr2fcqgf20bjf9658wqyhlp40v3pkvsj72l27s39wma94xf"; depends=[ggplot2 gtools pracma purrr reshape2 tibble units]; }; + hydroDCindex = derive2 { name="hydroDCindex"; version="1.0.0"; sha256="0nci4jj2aca2kaq4cgrv9sq9pksjaagqik2y8j1c2a1w39qjzyan"; depends=[]; }; hydroEvents = derive2 { name="hydroEvents"; version="0.11"; sha256="1w433lmzk6lr2lnqn1qcq13c980kpi0r881cdzm56n53s89zdh36"; depends=[]; }; - hydroGOF = derive2 { name="hydroGOF"; version="0.5-4"; sha256="0fif5kwpkxkwfw00whfprwibg21bgyk2a93k6323k7gax2c3r5ff"; depends=[hydroTSM xts zoo]; }; + hydroGOF = derive2 { name="hydroGOF"; version="0.6-0"; sha256="17i68al88d4xvam1fq63knsqgd29s4wvpd31z6zhnbbcbpd3j67v"; depends=[hydroTSM xts zoo]; }; hydroTSM = derive2 { name="hydroTSM"; version="0.7-0"; sha256="13jaz7mrjmfvankncfmnwxa0m2r78a9p686h0my3m3sv9bvz1qd6"; depends=[classInt e1071 lattice xts zoo]; }; hydroToolkit = derive2 { name="hydroToolkit"; version="0.1.0"; sha256="0bij4365hczvq17wj9hp0570v35m8ili11mp9dzfj3mvhhqrc9p4"; depends=[ggplot2 lubridate plotly readxl reshape2]; }; hydrogeo = derive2 { name="hydrogeo"; version="0.6-1"; sha256="16m6yvr9yhvb0vdh9pqd6gzf3h9km7gd89y6risjddv6g83469k8"; depends=[]; }; @@ -11778,15 +11972,16 @@ in with self; { hydrostats = derive2 { name="hydrostats"; version="0.2.9"; sha256="11ipfp5dnl336wbsw0nrrcd68hccp8igvlrr93rc3hrvif3slkim"; depends=[]; }; hydrotoolbox = derive2 { name="hydrotoolbox"; version="1.1.2"; sha256="0m5crm8n8i3fv43am649cdyrbfcfbais8fwrg6c7zy81dbhmy9m9"; depends=[ggplot2 lubridate magrittr plotly Rcpp readxl reshape2 tibble zoo]; }; hyfo = derive2 { name="hyfo"; version="1.4.6"; sha256="03z36ddq6vpld1v876adp5xrz0hjy46vhs5sn8sgaa57fhmya6cm"; depends=[data_table ggplot2 lmom maps MASS moments ncdf4 plyr reshape2 sf sp zoo]; }; - hyper2 = derive2 { name="hyper2"; version="3.0-0"; sha256="09nq5vxih9f7731nrd5avpk6gw4wbh9rpq4bmq7373ikgc3qy3mf"; depends=[alabama calibrator cubature disordR magrittr mathjaxr partitions Rcpp Rdpack]; }; - hyperSpec = derive2 { name="hyperSpec"; version="0.100.0"; sha256="0m0ws6lm5q1555n0qhixj4fqq4bbcf7i7d73pg85z74a3058gk5s"; depends=[dplyr ggplot2 lattice latticeExtra lazyeval testthat xml2]; }; + hyper_fit = derive2 { name="hyper.fit"; version="1.2.1"; sha256="1w6ra4sqdvzcyhsiyi3lgzy9m4ca3898qjdssdfgmarkrc13bk3n"; depends=[LaplacesDemon magicaxis MASS rgl]; }; + hyper2 = derive2 { name="hyper2"; version="3.1-0"; sha256="11bn7rhadisb46ls6ph9xbixz9zygd4ivjn3hgbv6059l2f2v0i0"; depends=[alabama calibrator cubature disordR frab magrittr partitions Rcpp Rdpack]; }; + hyperSpec = derive2 { name="hyperSpec"; version="0.100.2"; sha256="0g4lc26prwpb7qsk4q0rzhzz7lw9x4hfrnsbzikwv3na6lqkhkip"; depends=[dplyr ggplot2 lattice latticeExtra lazyeval rlang testthat xml2]; }; hyperbolicDEA = derive2 { name="hyperbolicDEA"; version="1.0.0"; sha256="05iqbkg3id7ysfmandan416mczzc76qq6kz5lm7s9444a6101agf"; depends=[Benchmarking doParallel dplyr foreach lpSolveAPI nloptr]; }; hypercube = derive2 { name="hypercube"; version="0.2.1"; sha256="0m0n64rl5fnhvhfdknrza8a0h5lw8vbgakaqbyfx77ixhwqhjn1l"; depends=[dplyr plotly stringr]; }; hypergate = derive2 { name="hypergate"; version="0.8.5"; sha256="10lhjj8sgjv9p6v0n93f1jgybvgb1yr92slrqjdphag4clqvygw0"; depends=[]; }; hypergeo = derive2 { name="hypergeo"; version="1.2-13"; sha256="13jdiy216znwhr91iqnh03mvkmyscw439syb3h4i67dd78sphnvd"; depends=[contfrac deSolve elliptic]; }; hyperoverlap = derive2 { name="hyperoverlap"; version="1.1.1"; sha256="10kcphn5zl1pl70xg9bn947i9mbnjxk03p6y7xhdlv152cihffw0"; depends=[e1071 ggplot2 MASS matlib misc3d rgl]; }; hypersampleplan = derive2 { name="hypersampleplan"; version="0.1.1"; sha256="1sk3s1jm46ac4i7p433s3kyngj86kq2821zzhp30a3y8vi1j2psq"; depends=[]; }; - hypervolume = derive2 { name="hypervolume"; version="3.1.3"; sha256="03x5zf1w44m5xb255lg4mwg98sr2cl4wvy7wb13lpk098w71q2id"; depends=[caret data_table doParallel dplyr e1071 fastcluster foreach geometry ggplot2 hitandrun ks maps MASS mvtnorm palmerpenguins pbapply pdist progress purrr raster Rcpp RcppArmadillo sp terra]; }; + hypervolume = derive2 { name="hypervolume"; version="3.1.4"; sha256="1vw9s85gr1mv7c21x7rk66bz7wg3nfy874ixrhbcksyrxjq82q3c"; depends=[caret data_table doParallel dplyr e1071 fastcluster foreach geometry ggplot2 hitandrun ks maps MASS mvtnorm palmerpenguins pbapply pdist progress purrr raster Rcpp RcppArmadillo sp terra]; }; hypoRF = derive2 { name="hypoRF"; version="1.0.0"; sha256="1yyq1pjxm9p395wq4zfimvcagspl8vlk0kzpa92pr084q5f7jcyr"; depends=[ranger]; }; hypothesis = derive2 { name="hypothesis"; version="1.1.0"; sha256="0mllh8lamls0rrbr9d12xa7a56pa2zahvr243kbfmhad81nalpl7"; depends=[glue htmltools htmlwidgets httr jsonlite magrittr purrr rlang]; }; hypothesisr = derive2 { name="hypothesisr"; version="0.1.1"; sha256="0z06risagphhvqiw4lrxy52q6q2yr10w2yxsm8iz1wh9ik097pcv"; depends=[dplyr httr jsonlite]; }; @@ -11795,6 +11990,7 @@ in with self; { hystReet = derive2 { name="hystReet"; version="0.0.3"; sha256="1vrby9lgy0nm5wa5r1y3k3l2s9fc8vdf4szy8isvnzayr464xvwi"; depends=[httr jsonlite lubridate]; }; hystar = derive2 { name="hystar"; version="1.0.0"; sha256="1gyk78nfhhglry2dwy21h9s2hqlqisd7cffwg2864spmwml4brcf"; depends=[Rcpp]; }; hysteresis = derive2 { name="hysteresis"; version="2.7.2"; sha256="0jn8glihvnf6l6gf91cisqi4h1iscp7qqvchkbcvz0mv8cvklmg8"; depends=[car MASS msm]; }; + hytest = derive2 { name="hytest"; version="0.1.0"; sha256="0zqbfra2ynnk7xhqbisrbjycydz4f91m6aljyym67iv0lpizdrwi"; depends=[]; }; i18n = derive2 { name="i18n"; version="0.2.0"; sha256="1ksvrrpymflfbr7acnv3sh4xa0xqjp44ngdpkp500p50mwpww1wr"; depends=[magrittr]; }; i2extras = derive2 { name="i2extras"; version="0.2.1"; sha256="14k9s5ppq3c7ldh6gqi82awmkk34ac0br0qr42gqba9lrssf4bsr"; depends=[ciTools data_table dplyr ggplot2 incidence2 MASS rlang tibble tidyr tidyselect vctrs]; }; iAR = derive2 { name="iAR"; version="1.2.0"; sha256="0svxn81a0yq3m51594zrpy99i8p9zcfjzbxsi19yyfcm6iymzv24"; depends=[ggplot2 Rcpp RcppArmadillo Rdpack]; }; @@ -11802,7 +11998,6 @@ in with self; { iBART = derive2 { name="iBART"; version="1.0.0"; sha256="05vwwdlm78s7qa5lv717yvw48alk7k8wapcs9b1rcrhpam0kr1y3"; depends=[bartMachine foreach glmnet]; }; iBST = derive2 { name="iBST"; version="1.2"; sha256="0z7v679s5w270dfls61hh4fab9pzzj4lsqwsx06r59s0hlsrv5nw"; depends=[Rcpp rpart survival]; }; iBreakDown = derive2 { name="iBreakDown"; version="2.1.2"; sha256="1qacvfzknchfm27mhl7a357fnb6lzjkj4vh8lch5aljz82sdmdaf"; depends=[ggplot2]; }; - iC10 = derive2 { name="iC10"; version="1.5"; sha256="1xq6xv582wxdb0nc2nia3q38155gx8z26idiqyx7h1rjb20hhwdl"; depends=[iC10TrainingData impute pamr]; }; iC10TrainingData = derive2 { name="iC10TrainingData"; version="1.3.1"; sha256="175ymib3h359296hk36psryksisipx63ybvacz8hys21irzx58j1"; depends=[]; }; iCAMP = derive2 { name="iCAMP"; version="1.5.12"; sha256="0rx0mjkmlqf5awq387h1bzampvkwp67jbkjz29qmw85ma6vlqbpi"; depends=[ape bigmemory data_table DirichletReg Hmisc minpack_lm nortest permute vegan]; }; iCARH = derive2 { name="iCARH"; version="2.0.2.1"; sha256="1x703ydssmgb7j0hgqn3d5sh9457jgj7s2m8i12x2b9wvkh0fz8j"; depends=[abind ggplot2 glue igraph KEGGgraph MASS Matrix mc2d RCurl reshape2 rstan]; }; @@ -11814,16 +12009,17 @@ in with self; { iForecast = derive2 { name="iForecast"; version="1.0.7"; sha256="03g15xps3bymx2jj6j02pr1llk3lcb5lc3s5r0i2c86qc92lprch"; depends=[caret magrittr]; }; iGSEA = derive2 { name="iGSEA"; version="1.2"; sha256="1xlz8mbxqnrwyqj7jwma7vmvjlaccajbfxf3hi4wp5qs2pch8806"; depends=[]; }; iGasso = derive2 { name="iGasso"; version="1.6.1"; sha256="050jq6b4k8k8hj0cbxz6dzzjp5lgp8bf00aq9jxwb74pmvmsrlwq"; depends=[CompQuadForm lattice MASS MBESS]; }; - iGraphMatch = derive2 { name="iGraphMatch"; version="2.0.4"; sha256="1p0cp581h3pdarg9pglxsazdxdmnjwkib77cll71havjyl7i9b0z"; depends=[clue igraph irlba Matrix Rcpp]; }; + iGraphMatch = derive2 { name="iGraphMatch"; version="2.0.5"; sha256="1cbmcqvw8xk55lv3nxj3xzmkasvaayv04xnzqjdr16yvjznpzkfd"; depends=[clue igraph irlba Matrix Rcpp]; }; iIneq = derive2 { name="iIneq"; version="1.0.2"; sha256="15487majkslabw33dgqfx0jmbzzjhiy8z07bki5540d1wf6rmmnn"; depends=[doParallel foreach]; }; - iMRMC = derive2 { name="iMRMC"; version="1.2.5"; sha256="0a99arybhv5awlkrmzyv6m4cbdszw77qjw90ywwbddkccq1fq2h2"; depends=[]; }; + iMRMC = derive2 { name="iMRMC"; version="2.0.0"; sha256="13dz307rqyf9pm6pc8qzx2r8whvcm8k53pryzxh10pyqdswy8wgm"; depends=[]; }; iMediate = derive2 { name="iMediate"; version="0.5.5"; sha256="1lwhrzm4g2fcazh782g7p11v5pyx165ig1dzgkmdmjffpwk0w8b4"; depends=[MBESS mvtnorm plotly]; }; iNEXT = derive2 { name="iNEXT"; version="3.0.1"; sha256="1nf4jhwqx5im966qzq7si78c5q4jgsa73d74ya8q8aj02n49jcyy"; depends=[ggplot2 Rcpp reshape2]; }; - iNEXT_3D = derive2 { name="iNEXT.3D"; version="1.0.2"; sha256="09m4r8j5c56l7qxzz5kxx8pzbf7lri40vqz4s4arpj9b7b5imfl7"; depends=[ape dplyr ggplot2 phyclust Rcpp reshape2 tibble tidytree]; }; - iNEXT_beta3D = derive2 { name="iNEXT.beta3D"; version="1.0.0"; sha256="1ia5midwraq1im0gh61fcpg2whq43mlby80b92y5fjdhh0ghbx8f"; depends=[abind ape dplyr future_apply ggplot2 iNEXT_3D magrittr phyclust tibble tidyr tidytree]; }; + iNEXT_3D = derive2 { name="iNEXT.3D"; version="1.0.5"; sha256="1dpfwf95sin8yn9mn60d9jappsq1spm02x4p0ikjj637qwisgpjs"; depends=[ape dplyr ggplot2 phyclust Rcpp reshape2 tibble tidytree]; }; + iNEXT_4steps = derive2 { name="iNEXT.4steps"; version="1.0.0"; sha256="0kjzrgwhhzgvwyrcrqfbshscyrx34blfjxr23iay9wby6qpfmb1j"; depends=[dplyr ggplot2 ggpubr iNEXT_3D purrr reshape2]; }; + iNEXT_beta3D = derive2 { name="iNEXT.beta3D"; version="1.0.2"; sha256="176gy6ldgslg6r2c18fmfc98jljsvvgx5fmgv0g6jzl64kirc5j8"; depends=[abind ape dplyr future_apply ggplot2 iNEXT_3D magrittr phyclust tibble tidyr tidytree]; }; iNZightMR = derive2 { name="iNZightMR"; version="2.3.0"; sha256="162gw11lfg53m5iw18vr9kvbklr6601mi53fbczcv4ppfpnc5qwq"; depends=[]; }; iNZightPlots = derive2 { name="iNZightPlots"; version="2.15.3"; sha256="0pc1z7ikh3c2l5s1dljdzaqk83m6i5p64p771waz5frkyyf3bg4r"; depends=[boot chron colorspace dichromat emmeans expss hexbin hms iNZightMR iNZightTools lubridate magrittr quantreg rlang s20x scales stringr survey units]; }; - iNZightRegression = derive2 { name="iNZightRegression"; version="1.3.3"; sha256="1qlakpx509cfj9r6g0pw28s5wwjg9i0srvhjhzarq4myxzqd78yq"; depends=[car dplyr GGally ggplot2 ggrepel ggtext iNZightPlots multcomp patchwork]; }; + iNZightRegression = derive2 { name="iNZightRegression"; version="1.3.4"; sha256="0zqfb25gz4dwf0hqccgq3pb5wv2zmkw3ldkpscwkmc12pz2xm7im"; depends=[car dplyr GGally ggplot2 ggrepel ggtext iNZightPlots multcomp patchwork]; }; iNZightTS = derive2 { name="iNZightTS"; version="2.0.0"; sha256="1wzzzkl64m7mk0mpkvgkj7ahlqdja9hyhwficprd4kyqxrv00f0r"; depends=[colorspace dplyr evaluate fable fabletools feasts forcats ggplot2 ggtext glue lubridate patchwork rlang stringr tibble tidyr tsibble urca]; }; iNZightTools = derive2 { name="iNZightTools"; version="2.0.1"; sha256="0qmpj8hwg4gmbyhp4r1li3rrq2f5743kg04r7s7ii0j9gwsw3y0s"; depends=[DBI dplyr forcats glue magrittr purrr readr rlang srvyr stringr survey tibble tidyr units]; }; iRafNet = derive2 { name="iRafNet"; version="1.1-1"; sha256="0w9bry49apkrrrabglnv5w9l47jakmc30jh8q22a8gazwss293fb"; depends=[ROCR]; }; @@ -11864,7 +12060,7 @@ in with self; { iccCounts = derive2 { name="iccCounts"; version="1.1.2"; sha256="1g9fb42pdfa4jwwp789v22xzr9y69vf4ff06g2avxcv5s792i84w"; depends=[Deriv dplyr ggplot2 glmmTMB gridExtra VGAM]; }; iccTraj = derive2 { name="iccTraj"; version="1.0.4"; sha256="0chac68jsxnmy0whm7ajnlv68xdplwzy5xa7pdybyp3zlxyj35ss"; depends=[doParallel dplyr foreach magic purrr sp spacetime trajectories]; }; iccbeta = derive2 { name="iccbeta"; version="1.2.0"; sha256="03ms1c8qpbgxabj3hh4n0gwcazw6cd0cvixck5rz8fkvj04xzjak"; depends=[lme4 Rcpp RcppArmadillo]; }; - iccde = derive2 { name="iccde"; version="0.3.5"; sha256="1z7ra8s0sddjmbfb8flgp4kmz1ckgwshz8h2nnpbd3liav84b5xv"; depends=[]; }; + iccde = derive2 { name="iccde"; version="0.3.6"; sha256="1q6nrbhirrzjjmqwn7mc0wziknqx9zi70s5riza2ic5shgsjq87i"; depends=[]; }; icd_data = derive2 { name="icd.data"; version="1.0"; sha256="0cynr9327wfg88661w4hali48mb6ghyvlqgybsa38k9bbf57v8aa"; depends=[]; }; icdGLM = derive2 { name="icdGLM"; version="1.0.0"; sha256="1mh9kwn21n19v4lrmj33ghpna7dl66fx19gi6lcjanmrpzrkwdnz"; depends=[Matrix]; }; icdpicr = derive2 { name="icdpicr"; version="1.0.1"; sha256="099ipcpz1cff7cr572lww34az4wwym8phpbk2ph0545k2fk0c56d"; depends=[stringr]; }; @@ -11883,7 +12079,7 @@ in with self; { icesTAF = derive2 { name="icesTAF"; version="4.2.0"; sha256="0xifza8s24gy09fibqdpkh0zc723jkx09ycx44gqffrx0ch8syds"; depends=[data_tree purrr roxygen2 TAF]; }; icesVMS = derive2 { name="icesVMS"; version="1.1.4"; sha256="0ppml34s4zz3vav08fjaj71bml8amaslw22zmib0scvw8k70jlir"; depends=[glue httr icesConnect icesVocab]; }; icesVocab = derive2 { name="icesVocab"; version="1.2.0"; sha256="0cd2w0w2m176mpfd3lzvxl88bcli1qrkjrli539i764nlyh0ipl0"; depends=[xml2]; }; - ichimoku = derive2 { name="ichimoku"; version="1.5.0"; sha256="037w2mijv7srisypjydr6iwxf432gbcvvbmdghffax5lzh9lw266"; depends=[ggplot2 mirai nanonext RcppSimdJson secretbase shiny xts zoo]; }; + ichimoku = derive2 { name="ichimoku"; version="1.5.2"; sha256="0ssvsdkzh9mk6jcg88sljgqdcwwbwy55si855mk8ihpcddvsy61x"; depends=[ggplot2 mirai nanonext RcppSimdJson secretbase shiny xts zoo]; }; icmm = derive2 { name="icmm"; version="1.2"; sha256="179q8w60g4yrv6wqgfmg47by1zc1mbhsdjgl7jq4wirqvwnxvgym"; depends=[EbayesThresh]; }; icosa = derive2 { name="icosa"; version="0.11.0"; sha256="1z1xajdg7q5n3ijjy45klrh4q3i855afl9088f42dwidyban3w3h"; depends=[igraph Rcpp sf sp]; }; icpsrdata = derive2 { name="icpsrdata"; version="0.6.1"; sha256="0mc96yj0nld63s4bhagha9dp8c2a2c7qdnk3lfh7yk0vq9ghjfin"; depends=[httr purrr rvest]; }; @@ -11891,7 +12087,7 @@ in with self; { icrf = derive2 { name="icrf"; version="2.0.2"; sha256="1apd9klng8dhd9z9nzqzpx8i84rvpwgyam9mzyh8jk6vd49cgjaf"; depends=[]; }; icsw = derive2 { name="icsw"; version="1.0.0"; sha256="0g7bcqs0rpbs1p202i9wjbl8hhy3r196zambm044xyf7kvsbzzf6"; depends=[]; }; idar = derive2 { name="idar"; version="1.5"; sha256="0433kyhwzaicb10jmb6b6b6lbfhd5g2zsdrg6v02lndb2j7dlk5c"; depends=[ape FD picante spatstat spatstat_explore spatstat_geom spatstat_random]; }; - idarps = derive2 { name="idarps"; version="0.0.3"; sha256="15ckavi7j4afwyq3m0z2kpq2j93wxmjfnhn7lh6r4ymwmj7bbsvy"; depends=[]; }; + idarps = derive2 { name="idarps"; version="0.0.4"; sha256="0n76v5p69hkh98ckvcn8nwg6by29mmhkvbzffm52q5071qzx64b7"; depends=[]; }; idbr = derive2 { name="idbr"; version="1.2"; sha256="1qcply9n3027mqm5fwi8j4dvjxly7pxm74b0ffah8jjjr9hvk5rv"; depends=[countrycode dplyr httr jsonlite purrr rnaturalearthdata sf stringr]; }; idcnrba = derive2 { name="idcnrba"; version="1.1.0"; sha256="0kdsvp263q28fs0qdvrjshp02n6r01zwjj7sj7r24rxppn77xa40"; depends=[base64enc dplyr DT flexdashboard haven htmlwidgets markdown miniUI nrba openxlsx readr rmarkdown rstudioapi shiny shinyjs srvyr survey tibble]; }; ideamdb = derive2 { name="ideamdb"; version="0.0.9"; sha256="1f4dcv6c8ny7pik547f4840vhll26mzfcijnfsiqx31xhn0gsizd"; depends=[dplyr ggplot2 stringr tidyr]; }; @@ -11911,23 +12107,26 @@ in with self; { ie2misc = derive2 { name="ie2misc"; version="0.9.1"; sha256="09f40nn56s6j70zz1fhkf7yyzdrypjd7khar82ffj1gsr1k0rnzi"; depends=[assertthat checkmate data_table gWidgets2 lubridate mgsub openxlsx reader readxl stringi]; }; ie2miscdata = derive2 { name="ie2miscdata"; version="1.0.4"; sha256="18hvkip57gvrmz3m3p66mlw45h60091jxbd2b65dimmc0k6wi7q4"; depends=[]; }; ieeeround = derive2 { name="ieeeround"; version="0.2-0"; sha256="0xaxrlalyn8w0w4fva8fd86306nvw3iyz44r0hvay3gsrmgn3fjh"; depends=[]; }; - iemisc = derive2 { name="iemisc"; version="1.0.4"; sha256="1yrppxylsrlh1l549qn1x0qnyd32zj3a2xji1a3qiv1sd1h7js41"; depends=[anytime assertthat berryFunctions checkmate chem_databases data_table foreach fpCompare geosphere ggplot2 ggpubr gsubfn iemiscdata lubridate matlab matlab2r measurements mgsub pracma qdapRegex ramify rivr roperators round sf signal sjmisc stringi units USA_state_boundaries zoo]; }; - iemiscdata = derive2 { name="iemiscdata"; version="1.0.1"; sha256="10cixkyx1x9m0vblxp0jrbxz3aqxf64v11ls630q55r4803dpfyz"; depends=[]; }; - iemisctext = derive2 { name="iemisctext"; version="0.9.99"; sha256="02rr7sjjbrvfxwjl87f2ki245a8cw5fvx7z2z4rl8ixxlyxj9p5v"; depends=[]; }; + iemisc = derive2 { name="iemisc"; version="1.0.5"; sha256="0dr9p4y0vdwxsd5dqp5ahqnv1sfckb3xy9i0bbas009g5hnzxp92"; depends=[anytime assertthat berryFunctions checkmate chem_databases data_table foreach fpCompare geosphere ggplot2 ggpubr gsubfn iemiscdata lubridate matlab matlab2r measurements mgsub pracma qdapRegex ramify rivr roperators round sf signal sjmisc stringi units USA_state_boundaries zoo]; }; + iemiscdata = derive2 { name="iemiscdata"; version="1.0.2"; sha256="1wsakabhj9majl4w63bpc95ccdvfg7xz9arj0ikvdj6dh1ardac6"; depends=[]; }; + iemisctext = derive2 { name="iemisctext"; version="1.0.1"; sha256="0280wib0xdnjl2ff8pvshjaj6riaqbwp2v96z2nj1w0lahyq69a3"; depends=[]; }; + ieugwasr = derive2 { name="ieugwasr"; version="1.0.0"; sha256="0pgx2ii23rvflvz55hf31956rzp8y4avski27i2xmx3gqydzhgqr"; depends=[dplyr httr jsonlite]; }; ifCNVR = derive2 { name="ifCNVR"; version="0.1.0"; sha256="0qcmgd3vi413n4ipa6ybkr7a1kwxyr2al8cw4gfr8fp2av1sk4vc"; depends=[data_table isotree rmarkdown]; }; ifaTools = derive2 { name="ifaTools"; version="0.23"; sha256="16xf3165gkmh3f9843m0n4wqdwwdfs6rjh64qcpz8srsm2z5y3l2"; depends=[ggplot2 OpenMx reshape2 rpf shiny]; }; ifctools = derive2 { name="ifctools"; version="0.3.6"; sha256="1qw50vc3icdfchas1l4d3i3i1r0i0w0kj91xm4wkyj4fsl19qqam"; depends=[]; }; + ifo = derive2 { name="ifo"; version="0.1.0"; sha256="0f2c7c6z1h7b5c0g21yr2drb7yqk68ivnxaa8m3ck2xlm226fa5g"; depends=[readxl rvest tidyr]; }; ifpd = derive2 { name="ifpd"; version="0.1.0"; sha256="06vylxzwk2p5wprxvzwj6wydsa1v9pfzd1v03m0jwgwk272slfg6"; depends=[readxl zoo]; }; ifs = derive2 { name="ifs"; version="0.1.10"; sha256="0w27z3fjv007717dsn72bm9hbpgzd6pfib6maf9ihnsjllb6k0v5"; depends=[]; }; ig_vancouver_2014_topcolour = derive2 { name="ig.vancouver.2014.topcolour"; version="0.1.2.0"; sha256="0yclvm6xppf4w1qf25nf82hg1pliah68z7h3f683svv0j62q748h"; depends=[]; }; igate = derive2 { name="igate"; version="0.3.3"; sha256="0b8dk976z0764cmxwcq6w2f3akv7iivivharinq029p90b600qza"; depends=[dplyr ggplot2 kableExtra knitr rmarkdown stringr xtable]; }; igcop = derive2 { name="igcop"; version="1.0.2"; sha256="19ffvkpsg41ba41jl3nd4s41kw4f4ncwcgpsf2h9cm0y19l4dja0"; depends=[Rcpp rlang vctrs]; }; - iglu = derive2 { name="iglu"; version="4.0.0"; sha256="0gcw15pw54dngqlimdxl6jhq9pbaapw1zqyb6xf6pxxg6gb3k2fs"; depends=[caTools dplyr DT ggplot2 ggpubr gridExtra gtable hms lubridate magrittr patchwork pheatmap plotly scales shiny tibble tidyr zoo]; }; + iglu = derive2 { name="iglu"; version="4.1.6"; sha256="1v73715hjmmyn1264m0q1skirvgfjwx316vlslysr5bvbcwggljf"; depends=[caTools dplyr DT ggplot2 ggpubr gridExtra gtable hms lubridate magrittr patchwork pheatmap plotly scales shiny tibble tidyr zoo]; }; igoR = derive2 { name="igoR"; version="0.2.0"; sha256="06f9f363zf1k026a0xg5myydzhgl6kgkqp74sz0jwgl44j2zp44s"; depends=[]; }; igraph = derive2 { name="igraph"; version="2.0.3"; sha256="0xlg5lxzr8dc260fii43chsspqvb962i1yrcars988b78lnig2lf"; depends=[cli cpp11 lifecycle magrittr Matrix pkgconfig rlang vctrs]; }; igraphdata = derive2 { name="igraphdata"; version="1.0.1"; sha256="19w5npa4b8c054v94xlr7nmhhg2fhq4m8jbds86skp8zvipl4rkl"; depends=[]; }; igraphinshiny = derive2 { name="igraphinshiny"; version="0.1"; sha256="1ww5s4jfihzcx4k35lbhzsf54z720xh7b2p5alzk843m6rx77986"; depends=[igraph shiny]; }; igraphtosonia = derive2 { name="igraphtosonia"; version="1.0"; sha256="0vy9jnpjp68l8s0hi1l57j9p41c543h3iqv16pwl550f38zqp8j6"; depends=[igraph]; }; + igraphwalshdata = derive2 { name="igraphwalshdata"; version="0.1.0"; sha256="06d0z8vbmnxqvinicr9ywdkyisl3kg93wyh3981b1ifl16fm8rdd"; depends=[igraph]; }; igrf = derive2 { name="igrf"; version="1.0"; sha256="1287mx1fpbq9y8jbyb43hlignkqg313rn3kc52pm6b2n77ipkrc6"; depends=[]; }; ihclust = derive2 { name="ihclust"; version="0.1.0"; sha256="049jlx8bspl1md06zyh3m7fr666cymmcwarsjrkr8pdd7vlg918j"; depends=[doParallel factoextra foreach ggplot2]; }; iheatmapr = derive2 { name="iheatmapr"; version="0.7.1"; sha256="1c4dvp0mvw3m6x0kdw05yja2rm1mkrjjmjfj67f0vvs5sqyaqwhv"; depends=[fastcluster ggdendro htmlwidgets jsonlite knitr magrittr RColorBrewer scales]; }; @@ -11935,6 +12134,7 @@ in with self; { ihpdr = derive2 { name="ihpdr"; version="1.2.1"; sha256="1qa9ndb5aqbmlqbl0ivh10ddah2rbhsc6928dml20fjgz7lggdww"; depends=[curl dplyr httr lubridate magrittr purrr readxl rlang rvest tidyr xml2]; }; iimi = derive2 { name="iimi"; version="1.0.2"; sha256="1bkxbqxa6i42mvz7j3191pzd2z35pqbzmn2b0kgbijlrfv8rg18z"; depends=[Biostrings caret data_table dplyr GenomicAlignments IRanges mltools MTPS R_utils randomForest Rsamtools stringr xgboost]; }; ijtiff = derive2 { name="ijtiff"; version="2.3.4"; sha256="1abidy6fvz0qzxicviggkpvcq434cpbz4rm8nbxbfmyj3ndbadv9"; depends=[checkmate cli dplyr fs magrittr purrr readr rlang strex stringr withr zeallot]; }; + ilabelled = derive2 { name="ilabelled"; version="0.9.0"; sha256="0a77dq1bf0ha6r0l2x7kq8nbmssprs8m62b8jsw3yh12f3kh895v"; depends=[]; }; imabc = derive2 { name="imabc"; version="1.0.0"; sha256="1p420jlvqqcqdjqp7y4mcjkzimw3qiygph5yrvmm75znax3fkg4z"; depends=[data_table foreach lhs MASS truncnorm]; }; image_CannyEdges = derive2 { name="image.CannyEdges"; version="0.1.1"; sha256="04maxzls7rg9kqmv1r5lhg11c18z0fkskn7im7b4plq5larw122y"; depends=[Rcpp]; }; image_ContourDetector = derive2 { name="image.ContourDetector"; version="0.1.1"; sha256="0h9nq6k99rfmldw1c00k2anlpbjbpm26pp1d7jg2wz334dvlvlij"; depends=[Rcpp sp]; }; @@ -11950,7 +12150,7 @@ in with self; { imageData = derive2 { name="imageData"; version="0.1-62"; sha256="1q5s6zda1vvinp23afxjys3zl17xaidb11a7iibxpz6rla75183d"; depends=[dae GGally ggplot2 Hmisc RColorBrewer readxl reshape]; }; imagefluency = derive2 { name="imagefluency"; version="0.2.5"; sha256="1vvr66a3mr6gyhs0acymics9k6k9lq6kbmpy0k86z91fb34pipfz"; depends=[magick OpenImageR pracma R_utils readbitmap]; }; imagefx = derive2 { name="imagefx"; version="0.4.1"; sha256="1mxd33y8zbq8kig6m6xihb5w8wrjppgmpyjspvaxjwk7si9a09k1"; depends=[moments signal]; }; - imager = derive2 { name="imager"; version="0.45.8"; sha256="0vrv7m9b9w8xjqa9w17xvrmpl403476zr0l9wqdp9ir6ssvnaf2f"; depends=[downloader igraph jpeg magrittr png purrr Rcpp readbitmap stringr]; }; + imager = derive2 { name="imager"; version="1.0.2"; sha256="0sjn3ig5p020gml200cy5bdbrbql7qv1fqhhzjpcbmhprf39113w"; depends=[downloader igraph jpeg magrittr png purrr Rcpp readbitmap stringr]; }; imagerExtra = derive2 { name="imagerExtra"; version="1.3.2"; sha256="1f6mxfn7am4ph9acbbx53r4bk4vsm73p7arh8rvrsic9pgma3gqf"; depends=[fftwtools imager magrittr Rcpp]; }; imageseg = derive2 { name="imageseg"; version="0.5.0"; sha256="1ps303zcqmiy5jv65z1c1lyzbjdcb2akvy2rmcwbms8j7a1y1shg"; depends=[doParallel dplyr foreach keras magick magrittr purrr tibble]; }; imageviewer = derive2 { name="imageviewer"; version="0.1.0"; sha256="1rsrwy5v0gnsmbay1zqijhvll2l1bs844m52w65588j9nlx4fci9"; depends=[htmlwidgets]; }; @@ -11965,7 +12165,7 @@ in with self; { imgpalr = derive2 { name="imgpalr"; version="0.3.2"; sha256="0wdddswyakcgwvp75ydp8q3wmxdgrms8r2lh9jm024f8im3j5ccw"; depends=[downloader dplyr farver jpeg magrittr tibble]; }; imgrec = derive2 { name="imgrec"; version="0.1.3"; sha256="0va04b264v2ywvqdgmvigygsd5f6vdy5cj2ip2nsyi1fzh68hadx"; depends=[base64enc dplyr httr jsonlite knitr rlang]; }; imguR = derive2 { name="imguR"; version="1.0.3"; sha256="14f7ghgc8rbrpqb21rinfbrj1wh80i6ii0awwi814152v5qzj4b3"; depends=[httr jpeg png]; }; - iml = derive2 { name="iml"; version="0.11.1"; sha256="0fi37lv9czaxcc123f6r57607shqhs83ks96n2n0b93dl1qs0j52"; depends=[checkmate data_table Formula future future_apply ggplot2 Metrics prediction R6]; }; + iml = derive2 { name="iml"; version="0.11.3"; sha256="1d0p41byqpw7niyyyqcj00y43dmhqrm2csmbarcy8mz7n0i1842b"; depends=[checkmate data_table Formula future future_apply ggplot2 Metrics R6]; }; immcp = derive2 { name="immcp"; version="1.0.3"; sha256="0xjk0a1dr45rnf6fzir74805winn1wppci2wk7wr2pwpmba86vzq"; depends=[arules clusterProfiler DOSE dplyr factoextra ggheatmap ggplot2 igraph magrittr Matrix openxlsx org_Hs_eg_db pbapply proxyC purrr rlang visNetwork]; }; immer = derive2 { name="immer"; version="1.5-13"; sha256="0fw657vq0rj00kgkwam9wahf8sg9rf4jh0jmy154q6hq9f80v299"; depends=[CDM coda psychotools Rcpp RcppArmadillo sirt TAM]; }; immunarch = derive2 { name="immunarch"; version="0.9.1"; sha256="0z44z74zvb1ci931n8zxpvs36cpwx5my6qd77c4z50bgn2hr00rf"; depends=[airr ape circlize data_table doParallel dplyr dtplyr factoextra fpc ggalluvial ggplot2 ggpubr ggraph ggrepel ggseqlogo glue igraph jsonlite magrittr MASS patchwork phangorn pheatmap plyr purrr Rcpp readr readxl reshape2 rlang rlist Rtsne scales shiny shinythemes stringdist stringi stringr tibble tidyr tidyselect UpSetR uuid]; }; @@ -11996,16 +12196,16 @@ in with self; { imputeTestbench = derive2 { name="imputeTestbench"; version="3.0.3"; sha256="0yc1l3r7g7x2pgyli6j08ikvsbvr24kijnn7pdj54blw7c0pdmm2"; depends=[dplyr forecast ggplot2 imputeTS reshape2 tidyr zoo]; }; imsig = derive2 { name="imsig"; version="1.1.3"; sha256="175is0b39grc609dskv9274czv4iwnmlg81dl4nr01xdp6f7g487"; depends=[ggplot2 gridExtra HiClimR igraph RColorBrewer survival]; }; in2extRemes = derive2 { name="in2extRemes"; version="1.0-3"; sha256="1lgsqm29zmjyf8kynyra2p3q7bs4fyd7ac4v6s3pbahzhhzdk94y"; depends=[extRemes]; }; - inTextSummaryTable = derive2 { name="inTextSummaryTable"; version="3.3.2"; sha256="0h95h31ghcwm7fpp9sfvg3za6381ghcpz4qn4dmw28kh7gd76y96"; depends=[clinUtils cowplot flextable ggplot2 ggrepel magrittr officer plyr reshape2 scales]; }; - inTrees = derive2 { name="inTrees"; version="1.3"; sha256="1afyjh2winb591am1cawchkysyslzv01nwyihvjb7n844pqr5s2j"; depends=[arules data_table gbm RRF xgboost xtable]; }; + inTextSummaryTable = derive2 { name="inTextSummaryTable"; version="3.3.3"; sha256="0zxxny28pra5hcfjijrki7qm29n9ys2mskcnqyvy6nn2b4y7p8wj"; depends=[clinUtils cowplot flextable ggplot2 ggrepel magrittr officer plyr reshape2 scales]; }; + inTrees = derive2 { name="inTrees"; version="1.4"; sha256="18gbw7v4xbsxdifk32qga3h3j17w40ljs1mkk0b4fzwin9z4sh27"; depends=[arules data_table gbm RRF xgboost xtable]; }; inaparc = derive2 { name="inaparc"; version="1.2.0"; sha256="0y3m2g5y12wj4af1wiqyi7nlb11avissd59g202rha0wqwzd8q3f"; depends=[kpeaks lhs]; }; inbreedR = derive2 { name="inbreedR"; version="0.3.3"; sha256="0g7h4jgmnbpm4c6pb6fkmpzdg4adkc0k72444jpxbvyddq3hqh24"; depends=[data_table]; }; incR = derive2 { name="incR"; version="2.1.0"; sha256="0mis4hwd9mw7ji322yqidiz8d9qsb4jkpndfdskxrrmpfpha9r91"; depends=[ggplot2 lubridate suncalc]; }; inca = derive2 { name="inca"; version="0.0.4"; sha256="1r3niibd6pja59am8in9gpyvxi2g5bh8bqqhdixzwaj3xzyyipii"; depends=[Matrix Rcpp RcppArmadillo]; }; incase = derive2 { name="incase"; version="0.3.2"; sha256="06qzzvxxwi0dp7ln864qszvk9xqbb4rgx5mbnkcvji7in6k2yj0n"; depends=[backports cli magrittr plu rlang]; }; incgraph = derive2 { name="incgraph"; version="1.0.1"; sha256="0zjvxk2krdlm5bcr0m80nxy46f69a1xadfjw5sjw249b28wdclml"; depends=[BH dplyr orca purrr Rcpp testthat tibble]; }; - incidence = derive2 { name="incidence"; version="1.7.3"; sha256="1wdxh2p7scm419fqki0i7vsz45rd7557h5n3zf9fshb8x1fdf2z7"; depends=[aweek ggplot2]; }; - incidence2 = derive2 { name="incidence2"; version="2.2.3"; sha256="0l8qk8wvwnnjw81gvsm3f4j0qmj7801mka03wbnkhr90ii23f9x6"; depends=[data_table grates pillar]; }; + incidence = derive2 { name="incidence"; version="1.7.5"; sha256="0ysvrbvgk7xiv2d931mgb8q18fxjhlknrlww7myidv7n5250sd0v"; depends=[aweek ggplot2]; }; + incidence2 = derive2 { name="incidence2"; version="2.3.1"; sha256="1zv31csmvfia8m1z1cql17my5xvnhfjc6647g0f4bpcba33vqk9i"; depends=[data_table dplyr grates pillar rlang tibble tidyr tidyselect vctrs]; }; incidental = derive2 { name="incidental"; version="0.1"; sha256="012pdwrkzlbnrrkvy67l6nvs1lrjgrzhfh3v4rqzk2ypdvfm3wmx"; depends=[dlnm ggplot2 MASS matrixStats numDeriv]; }; incidentally = derive2 { name="incidentally"; version="1.0.2"; sha256="063m672ym9w5zmzvdhr17smqy1mffkl3vls7nhpsxc4bjswqls2g"; depends=[igraph Matrix xml2]; }; inctools = derive2 { name="inctools"; version="1.0.15"; sha256="0ikldiwgizs2p9vcalk5729dr6krysnyr4ni0ybg9gljw7iafdlf"; depends=[binom cubature doParallel dplyr foreach ggplot2 glm2 magrittr plyr pracma rlang tibble tmvtnorm]; }; @@ -12024,8 +12224,8 @@ in with self; { ineq_2d = derive2 { name="ineq.2d"; version="0.1.0"; sha256="1l1d29krk1v66v4x66py8s6p30x6xw6d969ixcqnfsdyvbz3pwly"; depends=[]; }; ineqJD = derive2 { name="ineqJD"; version="1.0"; sha256="0anv384jwzn5gkc0jqsl81bkmrjd21br99c5q30xd6ncxavj4s57"; depends=[]; }; inet = derive2 { name="inet"; version="0.1.0"; sha256="1kjy2kgi5v29yk6pv776gwdqzkscjh96p3iv1j906vh47zp8wrag"; depends=[glmnet hdi MASS]; }; - infer = derive2 { name="infer"; version="1.0.6"; sha256="0rlb7l6jl6f5kgzd9s08bifgvyafvjyfpazgqzl0w1ki875642n1"; depends=[broom cli dplyr generics ggplot2 glue magrittr patchwork purrr rlang tibble tidyr vctrs]; }; - inferCSN = derive2 { name="inferCSN"; version="1.0.1"; sha256="18fqffkkvy4jzfqr71gmfva2hjb0mdhb6z4sd6pfvijg8r1d74yv"; depends=[ComplexHeatmap doParallel dplyr foreach ggnetwork ggplot2 ggraph Matrix patchwork progress purrr Rcpp RcppArmadillo]; }; + infer = derive2 { name="infer"; version="1.0.7"; sha256="0a4hb83xrj3c6rbficds9h7lgra04f004wn6kfpszszz0is7k0r9"; depends=[broom cli dplyr generics ggplot2 glue lifecycle magrittr patchwork purrr rlang tibble tidyr vctrs]; }; + inferCSN = derive2 { name="inferCSN"; version="1.0.3"; sha256="1c2aaysyjvxxynwp877bhi9w3lrydg96gp2is6a919dgmwi7ilvx"; depends=[ComplexHeatmap doParallel dplyr foreach ggnetwork ggplot2 ggraph Matrix patchwork progress purrr Rcpp RcppArmadillo]; }; inferference = derive2 { name="inferference"; version="1.0.2"; sha256="171h9zhvaza7fklcg07wk9sm8k2fy39k3cdjkzb3vk8p8acd051v"; depends=[Formula lme4 numDeriv]; }; inferr = derive2 { name="inferr"; version="0.3.1"; sha256="1ma90f31jcd65l5v3wqbx4x61gw3iay1a2hwjsd5aln1ivbgmzsv"; depends=[data_table magrittr Rcpp]; }; infinitefactor = derive2 { name="infinitefactor"; version="1.0"; sha256="0j6f9q8z81znwakyx4h0l8ypz0y4yv11d7l3rwljmn4rgspyjl5c"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; }; @@ -12039,7 +12239,7 @@ in with self; { influxdbclient = derive2 { name="influxdbclient"; version="0.1.2"; sha256="0zyb6ycyw03kwg8f27vhy14i0bh58j040bjbi9vm1m692hcvcqcd"; depends=[bit64 httr jsonlite nanotime plyr R6]; }; influxdbr = derive2 { name="influxdbr"; version="0.14.2"; sha256="03dzw86mvbc8w38q9skjki1z17vc04k9q8dx7sd3xg6xbr10f9d9"; depends=[dplyr httr jsonlite magrittr purrr rlang tibble tidyr xts zoo]; }; infoDecompuTE = derive2 { name="infoDecompuTE"; version="0.6.2"; sha256="0r1capiv4zr31dsy0sqly9zb00i86zq2ihbgsmb5g4cy0f04xlqz"; depends=[MASS]; }; - infoelectoral = derive2 { name="infoelectoral"; version="1.0.0"; sha256="0zrrc32xmw020djddfxdzsz5vch9aw4abqb04y9z3j5h14i07a1z"; depends=[dplyr stringr]; }; + infoelectoral = derive2 { name="infoelectoral"; version="1.0.2"; sha256="1ni00y4wni9dgpaj6x2p50bgmzfh2ybr350ywqmnwz5q30r9kjsm"; depends=[dplyr httr stringr]; }; informedSen = derive2 { name="informedSen"; version="1.0.7"; sha256="1zb93289jszyj57ji00r35hx8ralxw2n6i384h6myxddgl377qfv"; depends=[sensitivitymult]; }; infotheo = derive2 { name="infotheo"; version="1.2.0.1"; sha256="1m1979vf8rvq3534mp1hihfadikhxrg3p6ac3hirz96kgb4qxyy0"; depends=[]; }; infraFDTD_assist = derive2 { name="infraFDTD.assist"; version="0.6"; sha256="04j5nl5vxk79iciz6s9bpiyn319c2dbh7fdahgwira2r30w2fxv9"; depends=[fields]; }; @@ -12049,7 +12249,7 @@ in with self; { injurytools = derive2 { name="injurytools"; version="1.0.3"; sha256="0nk6rnyg8f2n7fki42xr8vradzkkmljrvd1ynh9p781849y77jz0"; depends=[checkmate dplyr forcats ggplot2 lubridate metR purrr rlang stringr tidyr tidyselect withr]; }; inlabru = derive2 { name="inlabru"; version="2.10.1"; sha256="1sazv0jz458lvdslza1d4y53q6ws9rn2g6sfgv3hin30qk6jzizg"; depends=[dplyr fmesher lifecycle magrittr Matrix MatrixModels plyr rlang sf sp terra tibble withr]; }; inlcolor = derive2 { name="inlcolor"; version="1.0.6"; sha256="0yhhy7yrycxg58shfwrja2zfdixss2wldi6qg262dfa9w6j68brj"; depends=[checkmate rlang scales]; }; - inldata = derive2 { name="inldata"; version="1.1.4"; sha256="0b1lnbb21knr33yy6a2lswxhhxxdm6nw9zw1h7chmba9gb7gf24m"; depends=[checkmate sf stringi terra]; }; + inldata = derive2 { name="inldata"; version="1.2.3"; sha256="0155mx8nx5g1vp3mcfar0n4qbxqyvs0fzqnmd8skrrygfk1aw0y5"; depends=[checkmate sf stringi terra]; }; inline = derive2 { name="inline"; version="0.3.19"; sha256="1mcr9hgq6kkq03n7pkcccxa7vg8jma0q7lfxc5vvkc6snydk1s8f"; depends=[]; }; inlinedocs = derive2 { name="inlinedocs"; version="2023.9.4"; sha256="115mng6fmjacb2mqa85mdqz79yfpgn08rshigsqcb2h234k0wnk3"; depends=[]; }; inlpubs = derive2 { name="inlpubs"; version="1.1.1"; sha256="0gg39mkid9s57hd9r5y5pa8228m965diz61s94v38qyix8pjdj37"; depends=[checkmate tm]; }; @@ -12061,7 +12261,7 @@ in with self; { insect = derive2 { name="insect"; version="1.4.2"; sha256="0pbac9il1jrhii0hxvvqjc3phyr2iamxwzanxx5mrkyjh2wsl3jh"; depends=[ape aphid kmer openssl phylogram RANN seqinr xml2]; }; insectDisease = derive2 { name="insectDisease"; version="1.2.2"; sha256="1ncj5fgmx19caf8m2p3ij5iamk941m9y725gs0nqpa9m6zfnzgf8"; depends=[plyr taxize]; }; insee = derive2 { name="insee"; version="1.1.5"; sha256="1f6y19dysm0mh3fkrwnqcgi5j1lzy08m3ij3wrx26q2vgwv5lkfg"; depends=[crayon dplyr httr openssl purrr rappdirs rlang stringr tibble tidyselect xml2]; }; - insight = derive2 { name="insight"; version="0.19.10"; sha256="0sh7pwnrlggizzpi0smpdq9fds2v8ql3bwdg4yxa2z2apaq3xk6y"; depends=[]; }; + insight = derive2 { name="insight"; version="0.20.1"; sha256="19lg5dipnwlfxzcpq2mj348f8pnzn6i7sj77hf5ppzha370acgy2"; depends=[]; }; inspectdf = derive2 { name="inspectdf"; version="0.0.12"; sha256="1k9dszjfpvpc10qr9nbw5r55mdwslgblhlrgnqjnwx9i89j03mlk"; depends=[dplyr ggfittext ggplot2 magrittr progress Rcpp rlang tibble tidyr]; }; inspector = derive2 { name="inspector"; version="1.0.3"; sha256="16gc98af6wmwf32fz8zml5v17g5lkiybzyzsqgphx0k19hrbc6kr"; depends=[Rdpack]; }; instaR = derive2 { name="instaR"; version="0.2.4"; sha256="0c4m471ragkpksr0h21cdgnjxcknf01xqz543dahxgzjg9ncjwhg"; depends=[httr jsonlite]; }; @@ -12070,11 +12270,10 @@ in with self; { installr = derive2 { name="installr"; version="0.23.4"; sha256="1qlwcww3bgbdfqk2qi1vvis11bnvkkwa6h2l195knhx0i0ha8pfj"; depends=[stringr]; }; instantiate = derive2 { name="instantiate"; version="0.2.2"; sha256="0nmx2r0hkzbm5bzz28yvzdphkxhzcnd9dgi88wixzkbnmhny83d2"; depends=[callr fs rlang]; }; insuranceData = derive2 { name="insuranceData"; version="1.0"; sha256="0wryh8i1v3bnpbqn6d6dpxr9bwwl6mnh5cb5igz0yanh4m1rx96w"; depends=[]; }; - insurancerating = derive2 { name="insurancerating"; version="0.7.2"; sha256="0yllp7r1jmv09py3v8blir7nc3vpd8y5a8b3r8k5ncyx7k56nbwh"; depends=[ciTools classInt colorspace data_table DHARMa dplyr evtree fitdistrplus ggplot2 insight lubridate magrittr mgcv patchwork scales stringr]; }; + insurancerating = derive2 { name="insurancerating"; version="0.7.4"; sha256="1bfl5khi70cfqg1kx0fa7ym6nxqhvk1rjff91kvxbc8q2nxj6wda"; depends=[ciTools classInt colorspace data_table DHARMa dplyr evtree fitdistrplus ggplot2 insight lubridate mgcv patchwork scales stringr]; }; intRegGOF = derive2 { name="intRegGOF"; version="0.85-5"; sha256="0xjq8vdlgqlzrvp752gd4qfrpnpapx7k6xzfsvfril8ngvm9a162"; depends=[]; }; intRinsic = derive2 { name="intRinsic"; version="1.0.2"; sha256="07hs1srvdzrqqqzzxkbrc10sns3i7nlp41b3ysaf1j03jgxwdyid"; depends=[dplyr FNN ggplot2 knitr latex2exp Rcpp RcppArmadillo reshape2 rlang salso]; }; intRvals = derive2 { name="intRvals"; version="1.0.1"; sha256="013n0qp12dqnnk931rvs6lql2r13z5j4jf27s4aqfyd80mnl5w7k"; depends=[lme4 plyr]; }; - intSDM = derive2 { name="intSDM"; version="2.0.2"; sha256="01gsq853vxkch69pmgypd4h5yfq1fnawa7qlamxglcxy6zmn3269"; depends=[blockCV geodata ggplot2 giscoR inlabru PointedSDMs R6 rgbif sf terra tidyterra]; }; intamap = derive2 { name="intamap"; version="1.5-7"; sha256="1rvjqv58bfsya6sc9kbqkln3f9zw3cvqhqsdxfsksvjybnmychxq"; depends=[automap doParallel evd foreach gstat MASS MBA mvtnorm sf sp]; }; intamapInteractive = derive2 { name="intamapInteractive"; version="1.2-6"; sha256="0mdn4fmc7skmf61pshyyc6g3xlxa2friyy0kzhn5d6q5ni3fm7rb"; depends=[automap gstat intamap sf sp spatstat_geom spcosa]; }; intccr = derive2 { name="intccr"; version="3.0.4"; sha256="1bpzsik6yypkxskp7ar8a1j0wmndsx41xn4kaffz0fni988l23hc"; depends=[alabama doParallel foreach MASS splines2]; }; @@ -12110,15 +12309,15 @@ in with self; { intervalaverage = derive2 { name="intervalaverage"; version="0.8.0"; sha256="07p9r358q3jxm8n7nypxmvpfnh61njivcwaplgzzxrlcbway6fq9"; depends=[data_table Rcpp]; }; intervals = derive2 { name="intervals"; version="0.15.4"; sha256="13wzwg5yc1wr8ww8bhv9x5ha78yajsfmb9phq4nbgrxkmbiy3h2h"; depends=[]; }; intervcomp = derive2 { name="intervcomp"; version="0.1.2"; sha256="1l6x1fl84li6is3b92b96q3fbv0rpgqy2lvw9cbi2cq8nh9imnyx"; depends=[]; }; - inti = derive2 { name="inti"; version="0.6.4"; sha256="0rfz3mipacp76dhn63616npn89jhhagmzx60r8l30kaarjm37y83"; depends=[agricolae dplyr DT emmeans FactoMineR ggplot2 lme4 purrr shiny stringi stringr tibble tidyr]; }; + inti = derive2 { name="inti"; version="0.6.5"; sha256="1zbfxc34613r460mhln3qn4fsx999vi4qamf5c8pkjdwyd8nvvbz"; depends=[agricolae dplyr DT emmeans FactoMineR ggplot2 googlesheets4 lme4 purrr shiny stringi stringr tibble tidyr]; }; intkrige = derive2 { name="intkrige"; version="1.0.1"; sha256="1p3fn5nzn1iliy025187k590qrsw3z3d47p67gzwwd6h050yrl86"; depends=[gstat raster Rcpp RcppArmadillo Rdpack sp]; }; intmap = derive2 { name="intmap"; version="1.0.0"; sha256="1fxq0jkahangv4pwsvnrr4iq2y6qp61l81b28yzwl74b0lmx6hbf"; depends=[BH maybe R6 Rcpp]; }; intmed = derive2 { name="intmed"; version="0.1.2"; sha256="0amcqzinj35yvb9nfy808bz098dqmnds13z335lgqm6sykriyjpl"; depends=[doParallel dplyr foreach MASS mice stringr tibble]; }; intradayModel = derive2 { name="intradayModel"; version="0.0.1"; sha256="1rpcm6bix06lwkj7wndy3zarbxwm24x15vwwb2gfqj0527pvk0gl"; depends=[ggplot2 magrittr patchwork reshape2 scales xts zoo]; }; intrinsicDimension = derive2 { name="intrinsicDimension"; version="1.2.0"; sha256="0cka20ifxx9njnvp18bzhrvmh3cwjnxkc0a23qzi43dahc51ijbc"; depends=[yaImpute]; }; - intrinsicFRP = derive2 { name="intrinsicFRP"; version="2.0.1"; sha256="1grcbqncx2j0y71r3l7qapj4d4sgzdgqfz4336lgbndpqvlc538x"; depends=[Rcpp RcppArmadillo]; }; + intrinsicFRP = derive2 { name="intrinsicFRP"; version="2.1.0"; sha256="1ji707s5501m6q8b2bgjd8d6avylb441710dkxaj96sznn8jf4ig"; depends=[glmnet Rcpp RcppArmadillo]; }; intrinsicKappa = derive2 { name="intrinsicKappa"; version="0.1"; sha256="13m0k1r6l2havl6qi8m6403zkdbma47i29yb6xr9xnyqij2392qz"; depends=[]; }; - intrval = derive2 { name="intrval"; version="0.1-2"; sha256="1fbgl2r359aml6cfz8x7h0381kxfx1dy0hr0c7012vr66f6c2lhi"; depends=[]; }; + intrval = derive2 { name="intrval"; version="0.1-3"; sha256="0pq2pbvhhczh90p78zcgv5n1wgw0jswly8g5bfqxq5j2nhd8imbd"; depends=[]; }; intsurv = derive2 { name="intsurv"; version="0.2.2"; sha256="02ds4gikrgg19knylg68ziani702dyhqc37fhf9j7awa1qxy2r9l"; depends=[Rcpp RcppArmadillo]; }; intsvy = derive2 { name="intsvy"; version="2.9"; sha256="0bk8v9ds6jrp7pvw63k777wj4pvg5nx1df4w5jz1hhr0gsv0jw8v"; depends=[dplyr foreign ggplot2 Hmisc memisc plyr reshape]; }; inum = derive2 { name="inum"; version="1.0-5"; sha256="1gbbsffbzxjrgi8yw21fl35fsbx7ns8hdrhja50byfqvnghbg5p6"; depends=[libcoin]; }; @@ -12153,6 +12352,7 @@ in with self; { ipcwswitch = derive2 { name="ipcwswitch"; version="1.0.4"; sha256="12z16c8sv1nhdv70kwx1a0wh588znkv5y5r0s9kcws0n3rjhzh9p"; depends=[survival]; }; ipdw = derive2 { name="ipdw"; version="2.0-0"; sha256="0lgxassvdd8vc4fyc84rbwwgdis7h4p5psqxxyb7xznm3zdzxc7h"; depends=[gdistance raster sf]; }; ipeadatar = derive2 { name="ipeadatar"; version="0.1.6"; sha256="1j600mhvy023ry9hx8ib6wqdv4mip1cjbwzs9190v8qpc9r2a460"; depends=[curl dplyr jsonlite lubridate magrittr purrr rlang sjlabelled stringr]; }; + ipeaplot = derive2 { name="ipeaplot"; version="0.3.1"; sha256="0bhqgxx2jc8abn73slk2w0961d51kx0sj5cs8b3livp3idxdrl4l"; depends=[checkmate extrafont ggplot2 ggthemes paletteer rlang scales showtext]; }; iperform = derive2 { name="iperform"; version="0.0.3"; sha256="0d54xd7aw5ipsgg4542k4b5gzysgsc76713jmq7kcd1djr56nk0v"; depends=[lubridate matrixStats]; }; ipflasso = derive2 { name="ipflasso"; version="1.1"; sha256="0gf1yj35vr92qi59hffcf4hzrh2b439kfd6m745wgpxq6wic1hs3"; depends=[glmnet survival]; }; ipfp = derive2 { name="ipfp"; version="1.0.2"; sha256="00588swwr7gz7gjx0clz55fgi4rm2h715fdmhsgm171bdmakh20r"; depends=[]; }; @@ -12165,9 +12365,9 @@ in with self; { ipolygrowth = derive2 { name="ipolygrowth"; version="0.1.2"; sha256="0q3n2mbkkra09kxq3scglli0ghj4g0j4xv3py9maq0ii7mbx0547"; depends=[dplyr magrittr rlang tidyr tidyselect]; }; ipr = derive2 { name="ipr"; version="0.1.0"; sha256="1db06r784c6jga0anp6p5b3k47yfhr84nzxyjn52pc9zkg3yifjm"; depends=[]; }; ipred = derive2 { name="ipred"; version="0.9-14"; sha256="0dcgabbqk7lb8pfqs06ix87caf5c9p6kcppi5sskv76h8z43vj41"; depends=[class MASS nnet prodlim rpart survival]; }; - iprior = derive2 { name="iprior"; version="0.7.3"; sha256="15qzqwikxy85fcd7psz363b5wb0kpi85icfyb47hbgdhln8fi2qb"; depends=[doSNOW foreach ggplot2 mvtnorm Rcpp RcppEigen reshape2 scales]; }; - ips = derive2 { name="ips"; version="0.0.11"; sha256="02jxanfhsjrabj33nwjv71vdc87hiyzikyqrfdj9ix6dky6lm199"; depends=[ape phangorn plyr seqinr XML]; }; - ipsRdbs = derive2 { name="ipsRdbs"; version="0.2.6"; sha256="16qyq2jzv5nhwsnsg20213vhg62aqjk2fx9mr2343dlx5j3cjvb3"; depends=[extraDistr ggplot2 Rdpack]; }; + iprior = derive2 { name="iprior"; version="0.7.4"; sha256="0zhyr19m6yxhn3gskfm14hmag5vjz1008fhxli2cg14z6hsdl1ww"; depends=[doSNOW foreach ggplot2 mvtnorm Rcpp RcppEigen reshape2 scales]; }; + ips = derive2 { name="ips"; version="0.0.12"; sha256="0vnsalm94vzagksqv4ph6x7vdwhd1lq278sak30pr4m9bc9xxchw"; depends=[ape data_table phangorn plyr XML]; }; + ipsRdbs = derive2 { name="ipsRdbs"; version="1.0.0"; sha256="018l91i88scak8mhz2p1a13dds7kyzig6wb8442hmzkwg63xi764"; depends=[extraDistr ggplot2 Rdpack]; }; ipsecr = derive2 { name="ipsecr"; version="1.4.1"; sha256="10kliwx8rn4xrcrrmmmr0n2f01dynms5l9lk5xzbyr853x4am5bl"; depends=[BH MASS nlme Rcpp RcppArmadillo secr stringr]; }; ipsfs = derive2 { name="ipsfs"; version="1.0.0"; sha256="1cpa0m19nddpp852vyiqw0azx8idyaqv225akfyrych9y8kw9n4d"; depends=[]; }; ipumsr = derive2 { name="ipumsr"; version="0.7.2"; sha256="0zkj33xg6b7aapmp8qd333qc6mmcwhbqx3pd8ibhdlcd1pc89hww"; depends=[dplyr haven hipread httr jsonlite lifecycle purrr R6 readr rlang tibble tidyselect xml2 zeallot]; }; @@ -12177,8 +12377,8 @@ in with self; { iq = derive2 { name="iq"; version="1.9.12"; sha256="0ka189anzdyfbf1gyhbsq40rsf4b85ragjg84mwfcgwk324y307c"; depends=[Rcpp RcppEigen]; }; ir = derive2 { name="ir"; version="0.2.1"; sha256="1ck5247w5lxffd2x3jrslfx13jigik48xmcnkr7my2kzjmnqiyr1"; depends=[baseline ChemoSpec dplyr ggplot2 hyperSpec lifecycle magrittr purrr Rdpack rlang signal stringr tibble tidyr units]; }; irace = derive2 { name="irace"; version="3.5"; sha256="1x0b0qr1ccq3s4d6k3z6dz94z4caxsmaywwdalw4isd7lm28d4nr"; depends=[R6]; }; - iraceplot = derive2 { name="iraceplot"; version="1.2"; sha256="0891wmk7m62qr0rzxxyzz7vpmzhjllj0d36vjafcf5bf12v0yzqk"; depends=[cli dplyr DT forcats ggforce ggplot2 gridExtra irace knitr matrixStats plotly rlang rmarkdown tibble tidyr truncnorm viridisLite withr]; }; - irboost = derive2 { name="irboost"; version="0.1-1.3"; sha256="0a7d3scikj4lmnh70vwck8gkbzh4d49j4yw5gk5bfi8nx1hfi47v"; depends=[mpath xgboost]; }; + iraceplot = derive2 { name="iraceplot"; version="1.3"; sha256="19scipjkxf08wmsv7vwscx3j120444l5ncin9l8fq1i3jq5w6pjy"; depends=[cli dplyr DT forcats ggforce ggplot2 gridExtra irace knitr labeling matrixStats plotly rlang rmarkdown tibble tidyr truncnorm viridisLite withr]; }; + irboost = derive2 { name="irboost"; version="0.1-1.5"; sha256="0bn27mng7bacgxk13qf6pgyf0h0i6wphpdgp1ily00dphair6rva"; depends=[mpath xgboost]; }; ircor = derive2 { name="ircor"; version="1.0"; sha256="07apa4l4ib11xw25d44b403s3la29sqlid13q41hjrlfxafm91ld"; depends=[]; }; irg = derive2 { name="irg"; version="0.1.6"; sha256="1c9v5yk1512ga51356fjyl8zblw61p9m55vx89fy81qi0vcwxrgj"; depends=[chk data_table RcppRoll]; }; irlba = derive2 { name="irlba"; version="2.3.5.1"; sha256="1ky5nlmyrnwz6121wwqd8p8r1ycnjkl5r290k4x2477rzs267zic"; depends=[Matrix]; }; @@ -12215,7 +12415,7 @@ in with self; { isocalcR = derive2 { name="isocalcR"; version="0.1.1"; sha256="1nn7pd0xj2j3xi5bvd6fvm062h1j0g1nxmp374r313fi2b0qcp0c"; depends=[]; }; isocat = derive2 { name="isocat"; version="0.3.0"; sha256="0y6b7pgg20lgcl2bwvc76ha02qzra76g2jchbfzrc4np8hdd75ma"; depends=[foreach magrittr plyr raster sp]; }; isocir = derive2 { name="isocir"; version="2.0-7.1"; sha256="0jgm0a26frq4fs5d578c44bpn15nshvzmrqfzcbwydf58x7w6sj2"; depends=[circular combinat TSP]; }; - isocountry = derive2 { name="isocountry"; version="0.1.0"; sha256="0z9m666h86zjzbfv1fvnhajcqzywc0bswvhj5rax2x1gzg2rc4fc"; depends=[tibble]; }; + isocountry = derive2 { name="isocountry"; version="0.2.0"; sha256="0n2sx731jy42g3yr3c6jba1x3fx42rczq95cwi94f4i78vsphl4f"; depends=[tibble]; }; isodistrreg = derive2 { name="isodistrreg"; version="0.1.0"; sha256="0na7jipwzr16afvz2l6wxh62mv0mrq1ma1qwxnys83zhr0dca099"; depends=[Matrix osqp Rcpp]; }; isogeochem = derive2 { name="isogeochem"; version="1.1.1"; sha256="112pcgbafjkgbfdkqvgz5i5iscfkjasq88k58az50cf47bqsqg0g"; depends=[]; }; isokernel = derive2 { name="isokernel"; version="0.1.0"; sha256="04mrbq2822yhcq4q82xwm61a38zsk6w55jgjkp0xnardpv8a39pb"; depends=[Matrix RANN]; }; @@ -12224,8 +12424,8 @@ in with self; { isopleuros = derive2 { name="isopleuros"; version="1.2.0"; sha256="1vqazdpg8whpx5nw8gq8bchh93dl04xmygs9as1k5yx1sijw164j"; depends=[]; }; isotone = derive2 { name="isotone"; version="1.1-1"; sha256="0kpzcfxac3yrvw4rszzc99r1mw78pq6bsgg0h332jamwvffhasgn"; depends=[nnls]; }; isotonic_pen = derive2 { name="isotonic.pen"; version="1.0"; sha256="1lgw15df08f4dhrjjfr0jqkcvxwad92kflj2px526pcxwkj7cj3i"; depends=[coneproj Matrix]; }; - isotracer = derive2 { name="isotracer"; version="1.1.5"; sha256="0qxdri6dq920d39ip1f37h1nzw90fr51bq4xc1m5bjv7vkqrqbks"; depends=[BH coda data_table dplyr latex2exp magrittr pillar purrr Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders tibble tidyr tidyselect]; }; - isotree = derive2 { name="isotree"; version="0.5.24-3"; sha256="02cnk9y8kc5zc9jzzhhxhgqi2z19yj2glvylbmydiagwli1aqvfl"; depends=[Rcpp]; }; + isotracer = derive2 { name="isotracer"; version="1.1.6"; sha256="0yapaaycakxzq6h3r2zp72zwf514qs64lhygiy3ix0dwxzafnh3b"; depends=[BH coda data_table dplyr latex2exp magrittr pillar purrr Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders tibble tidyr tidyselect]; }; + isotree = derive2 { name="isotree"; version="0.6.1-1"; sha256="0v0lr1aimlvgm6bpnaz1z4707fnrqvzfc3rziz0vcbzgycs0abvd"; depends=[jsonlite Rcpp]; }; ispd = derive2 { name="ispd"; version="0.2"; sha256="06h4z342d17rkpr2wwck4sq79kprdq6fgqf10jg8cs1f52q6pq0h"; depends=[ibd]; }; ispdata = derive2 { name="ispdata"; version="1.1.2"; sha256="16vzfwn4q1q0k1m01ibknwm37j2d4x63a3zrrqj25mq8nrg134bs"; depends=[curl dplyr janitor openxlsx readr sf]; }; istacr = derive2 { name="istacr"; version="0.2.2"; sha256="1hg94p0b5zkj50ckxrgas2a8rdwh0avspykscincxkfi0wk1cx0r"; depends=[jsonlite]; }; @@ -12244,7 +12444,7 @@ in with self; { itertools2 = derive2 { name="itertools2"; version="0.1.1"; sha256="0yra3x9ddvn5pp3jibm69205zazv81bz0cflw4mdvxpqadaf9f96"; depends=[iterators]; }; itol_toolkit = derive2 { name="itol.toolkit"; version="1.1.7"; sha256="0p29p8qk03aqcmxdskrf2mjms1isffwwxgh1kr38fxi43f3kc9q0"; depends=[ape colourpicker data_table dplyr ggsci miniUI purrr RColorBrewer rstudioapi seqinr shiny stringr tidyr wesanderson]; }; itp = derive2 { name="itp"; version="1.2.1"; sha256="0nj497zmdgh6y5npf7727gqn9f9pm5rv9bm0xfn8419lb9n3ann3"; depends=[Rcpp]; }; - itraxR = derive2 { name="itraxR"; version="1.12.1"; sha256="0s3arm3ln2p92by8lfj5fl1rh7cspj9v2q30rb4r99vncxp85alk"; depends=[broom compositions dplyr ggcorrplot ggplot2 janitor munsellinterpol readr rlang stringr tibble tidyr tiff]; }; + itraxR = derive2 { name="itraxR"; version="1.12.2"; sha256="0wp0kdzh8wlh3g2gxjz8lbylpwq3hzv5b6hwpvv2wabr1zhg1ya9"; depends=[broom compositions dplyr ggcorrplot ggplot2 janitor munsellinterpol readr rlang stringr tibble tidyr tiff]; }; its_analysis = derive2 { name="its.analysis"; version="1.6.0"; sha256="1ig7yq59y5xl1z182bbvgx8vsqs9sb1xscf6zxqn1qmy9f0ggf7v"; depends=[boot car forecast ggplot2 plyr]; }; itsadug = derive2 { name="itsadug"; version="2.4.1"; sha256="1sdqs279qxr3993hw08xg7b54yq03jw1597cqn6cf24sh9vpw9m1"; depends=[mgcv plotfunctions]; }; itscalledsoccer = derive2 { name="itscalledsoccer"; version="0.2.4"; sha256="1xyfs9y60mrmmrpx5rhm2xg3ysgc75wfb62vb63rr7nlv6sfisgl"; depends=[clisymbols crayon data_table dplyr glue httpcache httr jsonlite magrittr R6 rlang stringi tidyr]; }; @@ -12260,8 +12460,7 @@ in with self; { ivmodel = derive2 { name="ivmodel"; version="1.9.1"; sha256="1glm4nwlzyzwbv3nbi23qslnnqf47ps7iyd3wbr1bfdln0sr2s0l"; depends=[Formula ggplot2 Matrix reshape2]; }; ivmte = derive2 { name="ivmte"; version="1.4.0"; sha256="1bwvkw04pn4mf7iyfvaiabgx0qd83si13sr9jpqim9zqqhf1c1dc"; depends=[Formula]; }; ivo_table = derive2 { name="ivo.table"; version="0.4.1"; sha256="0hs3x52566y7axri1wyzr2c5w156nwfiq0j9sddvl1lcvsrxdivg"; depends=[checkmate dplyr flextable officer tidyr]; }; - ivprobit = derive2 { name="ivprobit"; version="1.1"; sha256="05b5gf5gmi2yrkg61n7w12qlgpnjakd1z8hhqxy6py8hahsf84gm"; depends=[Formula]; }; - ivreg = derive2 { name="ivreg"; version="0.6-2"; sha256="15iqj8rzmb1hybvnw8h6v321sj4pv7bg67nfk8g9bpzyds3zm9xl"; depends=[car Formula lmtest MASS]; }; + ivreg = derive2 { name="ivreg"; version="0.6-3"; sha256="1ccxs6bblknss41605vvvb473s936rvgj7ls7sd9ismxgq83ad5k"; depends=[car Formula lmtest MASS]; }; ivs = derive2 { name="ivs"; version="0.2.0"; sha256="06gjlmqqwlp86l708lk36vnxj83r082mbcccvp3x6g0apiy8ak98"; depends=[glue lifecycle rlang vctrs]; }; ivsacim = derive2 { name="ivsacim"; version="2.1.0"; sha256="0pldg086kaaqc2wab1m61anabqaf0mffv1hsb8plz1qn2f8gdcp3"; depends=[Rcpp RcppArmadillo]; }; ivtools = derive2 { name="ivtools"; version="2.3.0"; sha256="1wv0r9dy893hafbbrjcjrphb8dgql71ya4zfbkl5dfp7d4ncfxl0"; depends=[ahaz data_table nleqslv numDeriv Rcpp survival]; }; @@ -12274,7 +12473,7 @@ in with self; { jaatha = derive2 { name="jaatha"; version="3.2.5"; sha256="0npqpb6p4ap64mn5x2y424ayz1gy9s2b1ls4f4bs9l9mhr60z4jy"; depends=[assertthat R6]; }; jab_adverse_reactions = derive2 { name="jab.adverse.reactions"; version="1.0.3"; sha256="18rfaiv2w7lvd5psj6qkyfdc363y3xfrrg5fhmcv4s4n0cj8kbsv"; depends=[]; }; jaccard = derive2 { name="jaccard"; version="0.1.0"; sha256="1dmla6qc1k8iw2d7zfjqhf13gqd2lpsrj09yh47ljf994fpab936"; depends=[dplyr magrittr qvalue Rcpp]; }; - jack = derive2 { name="jack"; version="5.3.0"; sha256="0qxshhyrplq5bfgb1spjfh7iwazbjna5hv2rkn6fwbrpgvbc9jrg"; depends=[BH DescTools gmp multicool mvp partitions qspray Rcpp spray]; }; + jack = derive2 { name="jack"; version="6.0.0"; sha256="11clvyv09kfxwwbx1kmxzvc8j6frkx45k8hzcvjigbc8wais7ffi"; depends=[BH DescTools gmp multicool mvp partitions qspray ratioOfQsprays Rcpp RcppArmadillo RcppCGAL spray symbolicQspray]; }; jackalope = derive2 { name="jackalope"; version="1.1.5"; sha256="18k130d95k0zd7f88gbh0gnjmc41kyii82phslmrhyigrizhjq82"; depends=[ape R6 Rcpp RcppArmadillo RcppProgress Rhtslib zlibbioc]; }; jackknifeR = derive2 { name="jackknifeR"; version="1.2.0"; sha256="0s2kf0r102gwcrjd2ggimyxw99nwcdd0pfwgyw922f2kzwf0rxq6"; depends=[doParallel foreach]; }; jackstrap = derive2 { name="jackstrap"; version="0.1.0"; sha256="09y9pgb920lnbzlgm6j188q8lw1air83kx383a2f89zz7hhgg7jr"; depends=[Benchmarking doParallel dplyr fBasics foreach ggplot2 plyr reshape rlang scales tidyr]; }; @@ -12285,15 +12484,16 @@ in with self; { jage = derive2 { name="jage"; version="0.1.0"; sha256="159qgsj0syk6vg4sn4y2kk18hsm1xcp5i2cfjq8srgq14cdh91bd"; depends=[data_table mvtnorm pracma]; }; jaggR = derive2 { name="jaggR"; version="0.1.1"; sha256="0qd4kwcc8zcvg2p1njcv7z4y5ssg77zsylph5bcaqdjxq996q7rv"; depends=[formatR glue]; }; jagsUI = derive2 { name="jagsUI"; version="1.6.2"; sha256="012s8dcfaxvswwyjjff0x5c7cpvqqqx0zav0wjqm8gzq9pyv0lsn"; depends=[coda rjags]; }; - jagshelper = derive2 { name="jagshelper"; version="0.2.2"; sha256="00g5pw6kzi5hzplnzb8x3z4a895hwccf17hhwplzrlhrs77ras2c"; depends=[jagsUI MASS]; }; - jagstargets = derive2 { name="jagstargets"; version="1.1.0"; sha256="12iiqma5b114rnbcknid0qhhc1wr5hm4p2hg8d0bmxhsxnr9hfkr"; depends=[coda digest fst posterior purrr qs R2jags rjags rlang tarchetypes targets tibble withr]; }; + jagshelper = derive2 { name="jagshelper"; version="0.2.3"; sha256="1q5y38jzxmvdicjcmck0bmai6xvpi3hzzngrsgdy5bks9mqdgnlj"; depends=[jagsUI MASS]; }; + jagstargets = derive2 { name="jagstargets"; version="1.2.0"; sha256="10bx1sy5lcq1k1nliiwqjyq5hrywa97dh5zyyjdxq9rh94xhcc7p"; depends=[coda fst posterior purrr qs R2jags rjags rlang secretbase tarchetypes targets tibble tidyselect withr]; }; jalcal = derive2 { name="jalcal"; version="0.1.0"; sha256="19smqrhvab8f2xb8pa8x6gmvr0r2lwvqisfahixs7aa8lxi708jw"; depends=[]; }; janeaustenr = derive2 { name="janeaustenr"; version="1.0.0"; sha256="1ap8p1lpbj2wz90mpf1vbyzhv2spzv03bi8lwzpsir2y77hjxhxl"; depends=[]; }; janitor = derive2 { name="janitor"; version="2.2.0"; sha256="1bmsyrmy833kzj3s9s6207f54bx1ca0ianwhiyrlp0jfbqcd1m99"; depends=[dplyr hms lifecycle lubridate magrittr purrr rlang snakecase stringi stringr tidyr tidyselect]; }; janus = derive2 { name="janus"; version="1.0.0"; sha256="0dpd24qxwlnrrjyx2gffsmfbsf1schfnq9ck75k9935gmwy2ig04"; depends=[dplyr forcats ggplot2 hash keras lubridate Metrics narray purrr RcppAlgos readr reticulate Rmpfr StatRank tensorflow tictoc]; }; japanstat = derive2 { name="japanstat"; version="0.1.0"; sha256="0rd2q23s9r075ns47ccmr8fjvdcv2jncjs9w1c668s597cwkf6lb"; depends=[cli dplyr httr pillar progress purrr rlang stringi stringr tibble tidyr vctrs]; }; - jarbes = derive2 { name="jarbes"; version="2.0.0"; sha256="0lx565m9abvai47ndpryxbhpsdnh76sbaf0mixpd58raqnysc26b"; depends=[ggExtra ggplot2 gridExtra MASS mcmcplots R2jags rjags tidyr tidyverse]; }; + jarbes = derive2 { name="jarbes"; version="2.2.1"; sha256="1gpm7by9wmqgr69876wqd1w3nrzmzsgchh2xlsf37jxz2m5827c0"; depends=[bookdown GGally ggExtra ggplot2 gridExtra kableExtra MASS mcmcplots qpdf R2jags rjags tidyr]; }; jcext = derive2 { name="jcext"; version="0.1.1"; sha256="02zppiyq3gy551zi1g00gam1w4y1wgzn5zi9wrcz8yw915dla0ix"; depends=[ggplot2 maps RColorBrewer rworldmap sp stringr]; }; + jcolors = derive2 { name="jcolors"; version="0.0.5"; sha256="13rwxavq6zrzq9k6x436ydl1rr98qz7ab6npkg82hwqvx3k30n57"; depends=[ggplot2 scales]; }; jcp = derive2 { name="jcp"; version="1.2"; sha256="120hhysgnb5992ss2ays7ksyy0xb251lsxgnxihc11h2rqg6wqv8"; depends=[]; }; jdenticon = derive2 { name="jdenticon"; version="0.1.1"; sha256="19gczsf3b00rm1hbqf2azsxh698h0xbbdn3fx3nj5hr7ka24chzr"; depends=[fs glue jsonlite magick processx yesno]; }; jds_rmd = derive2 { name="jds.rmd"; version="0.3.3"; sha256="1ylpq3b6vqi8gj2q2vfkl9zshkwcn08mqms9rpvlwc34wrp09ian"; depends=[bookdown rmarkdown]; }; @@ -12301,9 +12501,9 @@ in with self; { jenga = derive2 { name="jenga"; version="1.3.0"; sha256="0yq1nkaakzajjdk3w6hzikl6pwqx0546mcb1ik688b0l55vmwphc"; depends=[abind dplyr entropy fANCOVA fastDummies ggplot2 greybox imputeTS lubridate modeest moments narray philentropy purrr readr Rfast scales tictoc]; }; jetpack = derive2 { name="jetpack"; version="0.5.5"; sha256="0c2vvayci7jm1p97ccgb5nccrgvdyid4fgh12cab18xwrwx1hzxx"; depends=[desc docopt remotes renv]; }; jetset = derive2 { name="jetset"; version="3.4.0"; sha256="0c99h5npsv2gf5d59s4qhkaqmjhbwa3prcykk24wzhnpfq6y6xhp"; depends=[AnnotationDbi org_Hs_eg_db]; }; - jewel = derive2 { name="jewel"; version="2.0.1"; sha256="0lj97bgqd2q3s2dcksn1nv4wwiw4ik9aimwa7kamfl0lmrlcz165"; depends=[igraph MASS Matrix matrixcalc purrr SMUT]; }; + jewel = derive2 { name="jewel"; version="2.0.2"; sha256="100lj4ydw7gx93lmnckxivb65yzjwi0cn5l070ss8532wrm297r3"; depends=[igraph MASS Matrix matrixcalc purrr SMUT]; }; jfa = derive2 { name="jfa"; version="0.7.1"; sha256="167n554hpmz4iqszlsjzjiphsf857hysfjkd2gx9kwv6r1crmv3k"; depends=[bde BH extraDistr ggplot2 Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders truncdist]; }; - jgsbook = derive2 { name="jgsbook"; version="1.0.4"; sha256="14rjs7ja2aj6rrq1xfv4r8zisnw4mkxiiwr7l8x7cai484adfqbf"; depends=[curl httr jsonlite statip]; }; + jgsbook = derive2 { name="jgsbook"; version="1.0.5"; sha256="0d54cdvx97787vwm9pqcmfx66y0l1crz4w16khpqr2k4nqixnkqk"; depends=[curl httr jsonlite statip]; }; jiebaR = derive2 { name="jiebaR"; version="0.11"; sha256="08v64xwr9jp4vh88x7y935khh4cmj8rwsjaxfd2c67n0445qppmd"; depends=[jiebaRD Rcpp]; }; jiebaRD = derive2 { name="jiebaRD"; version="0.1"; sha256="1wadpcdca4pm56r8q22y4axmqdbb2dazsh2vlhjy73rpymqfcph4"; depends=[]; }; jinjar = derive2 { name="jinjar"; version="0.3.1"; sha256="0d65a85pain2h642h4dd7sry58jkn2rkmaavzwiixp63j0gmixn8"; depends=[cli cpp11 fs jsonlite rlang]; }; @@ -12319,11 +12519,11 @@ in with self; { jmetrik = derive2 { name="jmetrik"; version="1.1"; sha256="1if1kxx8apgkbxpkjnlj2lpsfnyj2splsg1p3j5vxa7q6wx70f9j"; depends=[]; }; jmotif = derive2 { name="jmotif"; version="1.1.1"; sha256="0b2qllpfgs6q5fwfhxl5b4xdyzbvnja7ld766akf0xxznxvglkrg"; depends=[Rcpp RcppArmadillo]; }; jmuOutlier = derive2 { name="jmuOutlier"; version="2.2"; sha256="1vj9n1hsf780f7l0a22kmi3qm84j4dzjybjkh5zwh6bhwfjnjws3"; depends=[]; }; - jmv = derive2 { name="jmv"; version="2.4.11"; sha256="02iaasl3crg924y3dipv7pjq67nj9lf2i2j53pa4ccwz22nrpsbw"; depends=[afex BayesFactor car dplyr emmeans GGally ggplot2 ggrepel ggridges GPArotation jmvcore lavaan magrittr MASS multcomp mvnormtest nnet PMCMR psych R6 ROCR vcd vcdExtra]; }; - jmvReadWrite = derive2 { name="jmvReadWrite"; version="0.4.4"; sha256="13c4ja0b5162j19pkiwk3lvn41ak5ckwvhb9zh8p2l2hdnw48zgh"; depends=[jsonlite zip]; }; + jmv = derive2 { name="jmv"; version="2.5.5"; sha256="0d98sk8c6m6zi1p8wycdmk5xh48ji04lrhmqpj5q081llv30y31m"; depends=[afex BayesFactor car dplyr emmeans GGally ggplot2 ggrepel ggridges GPArotation jmvcore lavaan magrittr MASS multcomp mvnormtest nnet PMCMR psych R6 ROCR vcd vcdExtra]; }; + jmvReadWrite = derive2 { name="jmvReadWrite"; version="0.4.6"; sha256="02db03vmj377z5nyc7j8myrcxq48wqspnjf1v1sksdz66jxh4f7k"; depends=[jsonlite zip]; }; jmvconnect = derive2 { name="jmvconnect"; version="2.3.13"; sha256="0b5klfn4986haw3hhy3aarf88g08s1d46b8xrpxxqnwqw8yd7l88"; depends=[BH evaluate httr jmvcore rappdirs Rcpp]; }; jmvcore = derive2 { name="jmvcore"; version="2.4.7"; sha256="1pzcv5rkkhff73cf9kfp56d5frk5vjjj6ls1cd4bskyrm0754p3a"; depends=[base64enc jsonlite R6 rlang stringi]; }; - job = derive2 { name="job"; version="0.3.0"; sha256="0d7pw3q5lqlgmav1vx63y8l6gdav96656bg378wj001rx5gx052h"; depends=[digest rstudioapi]; }; + job = derive2 { name="job"; version="0.3.1"; sha256="14i0ljq2wp9k8112fr27sz0bc0zi2a68kls8vw5h3qa5n40v27cc"; depends=[digest rstudioapi]; }; jocre = derive2 { name="jocre"; version="0.3.3"; sha256="1i9n3r16pq6r4sy3fc1rxpil5ws8v2is0xdxafinvwr1hzkv1gz6"; depends=[boot KernSmooth plyr TSP]; }; joinXL = derive2 { name="joinXL"; version="1.0.1"; sha256="1l76bckjz5r1kdsh0s10i0gpca12rkfkp14346fn7avdcw73v23i"; depends=[data_table openxlsx R_utils rChoiceDialogs Rcpp readxl rJava timeDate timeSeries]; }; joineR = derive2 { name="joineR"; version="1.2.8"; sha256="0hf83115g5m0m1wv9yji2wvyzb5j4wrzbzkspdcswk9i4hkmp4h7"; depends=[lattice MASS nlme statmod survival]; }; @@ -12338,15 +12538,15 @@ in with self; { jointVIP = derive2 { name="jointVIP"; version="0.1.2"; sha256="1m1fqngc2000i7mfp6rcs5js0bg0kzspmavi55ksrb1kybf8rh7k"; depends=[ggplot2 ggrepel]; }; jointseg = derive2 { name="jointseg"; version="1.0.2"; sha256="0zilkxk30w3l9mwikmsgvpy5misjggs98c3bjrjy1pfc4b0is943"; depends=[acnr DNAcopy matrixStats]; }; jomo = derive2 { name="jomo"; version="2.7-6"; sha256="1np2sw0kq21kdhkv227pz2rqvpxg06r3mk93ggkrz5nl45ajmyiz"; depends=[lme4 MASS ordinal survival tibble]; }; - jordan = derive2 { name="jordan"; version="1.0-1"; sha256="1d0my0lf8bmlmygz9f23skywzsrhy4xaykyrblbmhb00l0vxpa5s"; depends=[emulator mathjaxr onion]; }; + jordan = derive2 { name="jordan"; version="1.0-5"; sha256="10va924f3fjasmqahlrk0k7fmnyjfqmkcgimqpvhfk0vwgr8pv3a"; depends=[emulator mathjaxr Matrix onion]; }; josaplay = derive2 { name="josaplay"; version="0.1.3"; sha256="0q6kjk3mjxwbqvq3zz0ylpi1viznp9pxzngqpjzv5sibv0ndh0lf"; depends=[magrittr utf8]; }; jose = derive2 { name="jose"; version="1.2.0"; sha256="09k6wnnqlsbmlag4156rcsnavph52grqagkax9kd1sxgpknril3v"; depends=[jsonlite openssl]; }; jot = derive2 { name="jot"; version="0.0.4"; sha256="0pzlj9vcz7p3zcg2y32cir593x193cxswkc3y9d1xh58vamrgs60"; depends=[cli yaml]; }; journalabbr = derive2 { name="journalabbr"; version="0.4.3"; sha256="0cp319v6r70kralxblfwvii8glx040fxwiqbfrdq50cpyvf7vv5k"; depends=[data_table httr purrr shiny stringi stringr tidytable]; }; - joyn = derive2 { name="joyn"; version="0.1.4"; sha256="17x9rwcrqv7qx9w0cfyshjsij9cdl0fk13cfqbv0ibnc2nfycw87"; depends=[cli data_table glue rlang]; }; - jpcity = derive2 { name="jpcity"; version="0.1.1"; sha256="0aw97p2ac8kb32f0lmji7xqr985vxl1i708pjaghzc3q1w8mx9ab"; depends=[cli dplyr lubridate pillar purrr rlang stringr tibble vctrs]; }; + joyn = derive2 { name="joyn"; version="0.2.0"; sha256="0p8s90fkjwlllhk7a60xs6pfvgbhyz5sk3rdvdp5sb4l037rb4m2"; depends=[cli collapse data_table lifecycle rlang]; }; + jpcity = derive2 { name="jpcity"; version="0.2.1"; sha256="1wpznczyx9vmhyznzph0f4lc2rl5x3nhdygp2yfq3hl0kwxrgzfz"; depends=[cli dplyr lifecycle lubridate pillar purrr rlang stringr tibble vctrs]; }; jpeg = derive2 { name="jpeg"; version="0.1-10"; sha256="1jkqj58hj33ar9wyl7c1cnj3h42icq7crmjk93n933q8qc4zdnf8"; depends=[]; }; - jpgrid = derive2 { name="jpgrid"; version="0.3.1"; sha256="0pp5nwvv0sglr089m78q4kaq7pkj7w2qdylpaahyjqb4iqk06grh"; depends=[cli dplyr geosphere lifecycle pillar purrr rlang sf stars stringr tibble tidyr tidyselect units vctrs]; }; + jpgrid = derive2 { name="jpgrid"; version="0.4.0"; sha256="01x2iyc37pfd1rz4avgiv1ng1d5g4hpi4viv8y0pcb9rpv3dymw1"; depends=[cli dplyr lifecycle pillar purrr rlang sf stars stringr tibble tidygraph tidyr units vctrs]; }; jpmesh = derive2 { name="jpmesh"; version="2.1.0"; sha256="0q8adf582h92qwdwgh4dk53s8rixrrh96r8vzy6bwxvizqf0i3y8"; depends=[leaflet magrittr memoise miniUI purrr rlang sf shiny tibble units vctrs]; }; jpstat = derive2 { name="jpstat"; version="0.4.0"; sha256="1vzqipxk019f9chm9nxcsifiv3i2cmqvwgyx45zrh2cxsrn8bhvk"; depends=[dplyr httr lifecycle navigatr pillar purrr rlang stickyr stringr tibble tidyr vctrs]; }; jqbr = derive2 { name="jqbr"; version="1.0.3"; sha256="1afraa18zwv3lbgxpqj4zkvlhzmv5ziajww1iccpkr7ca1rn4zk3"; depends=[htmltools jsonlite shiny]; }; @@ -12359,10 +12559,10 @@ in with self; { jrvFinance = derive2 { name="jrvFinance"; version="1.4.3"; sha256="0g3w65avys5chni0zlahzwqgv09z9na08yhay385ax33ddwrcrjv"; depends=[]; }; js = derive2 { name="js"; version="1.2"; sha256="0s5rj845255a4fzv4h76gcnnqyl5cg3c03r2ay3f00jxnxvvigcg"; depends=[V8]; }; jsTree = derive2 { name="jsTree"; version="1.2"; sha256="06mmz55brm6w19vnlk1w8qaz0n3czlyl4fs62nzgdlsdjn8pad1h"; depends=[data_table htmltools htmlwidgets jsonlite]; }; - jsTreeR = derive2 { name="jsTreeR"; version="2.5.0"; sha256="0qkywv3var6ash1vsl684pjhwrn7hmw3nl6i5kcqvb7xijs20cwp"; depends=[base64enc fontawesome htmltools htmlwidgets jquerylib miniUI R_utils rstudioapi shiny shinyAce]; }; + jsTreeR = derive2 { name="jsTreeR"; version="2.6.0"; sha256="1wck0wnj41qs3cjjmp4b8bnjy7l736k5xqq89al40am0ixnf86bs"; depends=[base64enc fontawesome htmltools htmlwidgets jquerylib miniUI R_utils rstudioapi shiny shinyAce]; }; jshintr = derive2 { name="jshintr"; version="0.1.0"; sha256="08j28c2ab9fh6g7qp2vl8j5hz5kkikvl2id979kv92ach9vranyd"; depends=[htmltools htmlwidgets rstudioapi]; }; jskm = derive2 { name="jskm"; version="0.5.3"; sha256="078aij3n53q1pj5wb32bvmzncw9hhwxxp3s0lg8iqgpcyb4cgbj0"; depends=[ggplot2 ggpubr patchwork scales survey survival]; }; - jsmodule = derive2 { name="jsmodule"; version="1.5.1"; sha256="1n3fq2i53vsbh0z6p8142mi00cy9zxbsh34s048h97hg0ljzwkz6"; depends=[data_table DT epiDisplay forestploter geepack GGally ggplot2 ggpubr haven Hmisc jskm jstable labelled MatchIt maxstat officer pROC purrr RColorBrewer readr readxl rstudioapi rvg see shiny shinycustomloader shinyWidgets survey survIDINRI survival timeROC]; }; + jsmodule = derive2 { name="jsmodule"; version="1.5.5"; sha256="1av1c6wza8rrd7klkzhy5y7ncp3xc07bmvm32vskm7nkfglcky4k"; depends=[data_table DT epiDisplay flextable forestploter geepack GGally ggplot2 ggpubr haven Hmisc jskm jstable labelled MatchIt maxstat officer pROC purrr RColorBrewer readr readxl rstudioapi rvg scales see shiny shinycustomloader shinyjs shinyWidgets survey survIDINRI survival timeROC]; }; json2aRgs = derive2 { name="json2aRgs"; version="0.3.0"; sha256="0n1kj1kll6x7ar00y32pf8z38z7z1bnj29nlv9dx068n4kmy89v7"; depends=[jsonlite yaml]; }; json64 = derive2 { name="json64"; version="0.1.3"; sha256="19q8qgf4wnd3np12ajy180klpjy0g2csw5micwb4sl7qfzl6wc7j"; depends=[jsonlite]; }; jsonNormalize = derive2 { name="jsonNormalize"; version="1.0.0"; sha256="1szvi8c0r75jv7y2y1jsampb783svvx04x4rvyw8v9qkiw0qpfis"; depends=[rstudioapi V8]; }; @@ -12372,7 +12572,8 @@ in with self; { jsonlite = derive2 { name="jsonlite"; version="1.8.8"; sha256="196an37f118qw43vyfaygh01dirh3hyz84ix8bbs6fsck0b17qkx"; depends=[]; }; jsonstat = derive2 { name="jsonstat"; version="0.0.2"; sha256="0p0d3snl1971p5ikrkmwqrjjh4fy0b89qk3rnd1dayfb0r80xnnj"; depends=[cli dplyr jsonlite rlang]; }; jsonvalidate = derive2 { name="jsonvalidate"; version="1.3.2"; sha256="0myvm93azl6mj60l8fp91qa3ln3nnwj4p48xli8k215sm6zhhv1b"; depends=[V8]; }; - jstable = derive2 { name="jstable"; version="1.1.7"; sha256="1rg913xfyzyxrfpvidxh80y4m4ls9ns14d24j2kv7qsaxhzq00si"; depends=[coxme data_table dplyr geepack labelled lme4 magrittr purrr survey survival tableone tibble]; }; + jstable = derive2 { name="jstable"; version="1.2.6"; sha256="1g8qfbm8fxjm48dwmwfgckdsynicbmpnj35yjy34nal98qs5andp"; depends=[coxme data_table dplyr geepack labelled lme4 magrittr purrr survey survival tableone tibble]; }; + jstager = derive2 { name="jstager"; version="0.0.2"; sha256="14n4j8imka9rrnxidvsh3rax4qqbg2ccnj6pwcwgqyw897fimjkv"; depends=[dplyr httr openxlsx rvest tibble xml2]; }; jstor = derive2 { name="jstor"; version="0.3.11"; sha256="1n5l6wz93bjhhhpikmvmjd5famxbrsk3d6z61bb7sp6xvslychlj"; depends=[cli crayon dplyr furrr magrittr pryr purrr readr rlang stringr tibble tidyr xml2]; }; jtdm = derive2 { name="jtdm"; version="0.1-2"; sha256="034hajlqz7mypnia77nm1fihhc5sjwaxvrk83qj1miqd5yilygvx"; depends=[ggforce ggplot2 gridExtra mniw mvtnorm reshape2]; }; jti = derive2 { name="jti"; version="0.8.4"; sha256="0jxqv3xa9yyzizx1rhxjv65c8b253shridy57skrd5kya701n460"; depends=[igraph Rcpp RcppArmadillo sparta]; }; @@ -12387,6 +12588,7 @@ in with self; { jvcoords = derive2 { name="jvcoords"; version="1.0.3"; sha256="1ixmz3pj18zddgah59iqd4zbm5praw0dvn6c93dn5mrwx92pa65c"; depends=[]; }; jvnVaR = derive2 { name="jvnVaR"; version="1.0"; sha256="0zh0dc6wqlrxn5r2yv9vkpyfb8xsbdidkjv9g6qr94fyxlbs4yci"; depends=[]; }; k5 = derive2 { name="k5"; version="0.2.1"; sha256="0mlanbp48b6y2wvcr6q1nka27vm861zyvlzj6fs046rw7qnzmg1k"; depends=[clipr dplyr fs ggplot2 glue lubridate magrittr purrr readr rlang stringr tibble usethis]; }; + kDGLM = derive2 { name="kDGLM"; version="1.2.0"; sha256="10is3f3gcax317gxkbvsv35385q9cjmxb14dfxxmq7y7aw4p6iqb"; depends=[extraDistr generics Rdpack Rfast]; }; kNNvs = derive2 { name="kNNvs"; version="0.1.0"; sha256="1zbfk8fanwmzn0ryhyxmq7npl1pysgnhs4chpfi1kxlnlbgfxfl1"; depends=[]; }; kSamples = derive2 { name="kSamples"; version="1.2-10"; sha256="13ap5ggid3w3s3k5mzz1ir31j96hjg6msa2s1hcy66zv242wqrid"; depends=[SuppDists]; }; kStatistics = derive2 { name="kStatistics"; version="2.1.1"; sha256="149aly73m7ls4pvyhg861j6yi2yyyr4hdwzh53hfyrakr73rq7y4"; depends=[]; }; @@ -12396,15 +12598,16 @@ in with self; { kairos = derive2 { name="kairos"; version="2.1.0"; sha256="1n59sicqffj7gn3l2726w0dnfxx4j8h16jkjv5lp4h3acpdnx6c9"; depends=[aion arkhe dimensio extraDistr]; }; kalmanfilter = derive2 { name="kalmanfilter"; version="2.1.1"; sha256="0d45gx7r7d80bvn57g5xy24pf193ds3nyi5b8alpn4f5y93iy86h"; depends=[Rcpp RcppArmadillo]; }; kamila = derive2 { name="kamila"; version="0.1.2"; sha256="01rwalv2qigxl3j3jyhrdbxlarwf0xdc8xa6c42sgcl6qpna5vn7"; depends=[abind gtools KernSmooth plyr Rcpp]; }; - kangar00 = derive2 { name="kangar00"; version="1.4.1"; sha256="0c3wrzk7k322xj0yzladxdhh2j91qm7m0dyqqqfsshfkh8d22m48"; depends=[bigmemory biomaRt CompQuadForm data_table igraph KEGGgraph lattice sqldf]; }; - kanjistat = derive2 { name="kanjistat"; version="0.9.1"; sha256="0yp5x1zvf8k4gaz2fpi6qa1mpfkmsvdv7y0b7scbf168yjqq8m7a"; depends=[crayon dendextend gsubfn lifecycle png purrr rlang ROI showtext stringi stringr sysfonts transport xml2]; }; - kantorovich = derive2 { name="kantorovich"; version="3.1.0"; sha256="0hhqglqasc76pcybz7jc18dsq3bhgmbw11d2zc3xy8vg8i0ykz63"; depends=[CVXR gmp lpSolve ompr ompr_roi rcdd Rglpk ROI_plugin_glpk slam]; }; + kangar00 = derive2 { name="kangar00"; version="1.4.2"; sha256="14i4i7m5y02hybllkawwxlc4g0j4lr1pybqip6zpqd612j5q4mfm"; depends=[bigmemory CompQuadForm data_table igraph lattice sqldf]; }; + kanjistat = derive2 { name="kanjistat"; version="0.14.1"; sha256="1d6r923xczhr75dmb3vq2pr3l9maigk8zvvk4r5x0jlh8sgrwdr0"; depends=[crayon dendextend gsubfn lifecycle Matrix png purrr RANN Rcpp rlang ROI showtext stringi stringr sysfonts transport xml2]; }; + kantorovich = derive2 { name="kantorovich"; version="3.2.0"; sha256="1fvf2j518h6mfjrkh7c9swpi8adfd6a5pr7b6pc6al16jbvbw3rf"; depends=[CVXR gmp lpSolve ompr ompr_roi rcdd Rglpk ROI_plugin_glpk slam]; }; kaos = derive2 { name="kaos"; version="0.1.2"; sha256="0hzzb8ldydl4g3cl1579q8jv835q4cdmn8agafp6qqdhwi1xxw8k"; depends=[ggplot2 reshape2]; }; kaphom = derive2 { name="kaphom"; version="0.3"; sha256="081drgckirc0wv2viyhhnabrlfzi0nkpq6pffw2rxfjyxdsyvnwa"; depends=[]; }; kappaSize = derive2 { name="kappaSize"; version="1.2"; sha256="0lrcyj85zcl73m6bhbzl6rkprrfpfwmm4amyjkg1xsasy5zlwk67"; depends=[]; }; kappalab = derive2 { name="kappalab"; version="0.4-12"; sha256="130k24wzan7slgvfld3yi12x8h9ybvwddfzdcvj3xvn7ijhjj25k"; depends=[kernlab lpSolve quadprog]; }; karaoke = derive2 { name="karaoke"; version="2.0"; sha256="09fxf2pgs7nj96p8cfwc8ghwl8aqk6zal8njizbrz19m6l7ygxmk"; depends=[seewave tuneR]; }; karel = derive2 { name="karel"; version="0.1.1"; sha256="0nvzvd8aq0sipcvn8agjjd2k1wykpgc99nrrk2cxrlvsjbpd2w52"; depends=[dplyr gganimate ggplot2 gifski magrittr purrr tidyr]; }; + karlen = derive2 { name="karlen"; version="0.0.2"; sha256="0600m0hgll7sl8v3ah3g2dl5wa4brc929mp27iid9d1s9brhzgxv"; depends=[tibble]; }; karyotapR = derive2 { name="karyotapR"; version="1.0.1"; sha256="01mxsv4ky6d16xjkvi6lc2cfvrdll6whyizxf500m8ds9bdlmqha"; depends=[circlize cli ComplexHeatmap dbscan dplyr fitdistrplus GenomicRanges ggplot2 gtools IRanges magrittr purrr rhdf5 rlang S4Vectors SingleCellExperiment SummarizedExperiment tibble tidyr umap viridisLite]; }; katex = derive2 { name="katex"; version="1.4.1"; sha256="18cziglz8qy1v9gfcjiixq2d3l3na5p51zrxpy3x8asjiddq13d3"; depends=[V8]; }; kayadata = derive2 { name="kayadata"; version="1.3.0"; sha256="1fq8yaiis38avmnklq2g17sz1aphplraqgw40q5zfs1kdvhr39gp"; depends=[dplyr forcats ggplot2 magrittr purrr scales stringr tidyr]; }; @@ -12414,7 +12617,7 @@ in with self; { kde1d = derive2 { name="kde1d"; version="1.0.7"; sha256="1z6g54qhiry04hx39akz1ll78rw49w7gwkcbjagxyrfq8gswa2yn"; depends=[BH randtoolbox Rcpp RcppEigen]; }; kdecopula = derive2 { name="kdecopula"; version="0.9.2"; sha256="0g5c12wm3byd4chd8i9mxv599gsf4ip4qghx83j3mmhsmn05zf4y"; depends=[lattice locfit qrng quadprog Rcpp RcppArmadillo]; }; kdensity = derive2 { name="kdensity"; version="1.1.0"; sha256="07d1p3ysdm66a9sf0gih5xjb3wfab44c3sr8aaraz22s2a9q9b55"; depends=[assertthat EQL univariateML]; }; - kdevine = derive2 { name="kdevine"; version="0.4.4"; sha256="1508dyjqn4vrs83b70h06ffygrx6iwqcaa360b08j3qlrlq742c6"; depends=[cctools doParallel foreach kdecopula KernSmooth MASS qrng Rcpp VineCopula]; }; + kdevine = derive2 { name="kdevine"; version="0.4.5"; sha256="0d157kl8x9jq4h8h0r8iia25wwdw1syc4f1iqp5mgn3l4kgark9s"; depends=[cctools doParallel foreach kdecopula KernSmooth MASS qrng Rcpp VineCopula]; }; kdist = derive2 { name="kdist"; version="0.2"; sha256="18q7njvsb9sbm412c6ms4b4nxg768z9qahws5rnin06gvb25nfcx"; depends=[]; }; kdpee = derive2 { name="kdpee"; version="1.0.0"; sha256="1vrpr1rkk0ypl5yi3cjgw0fglyx9r2fbcq21n172ax0w3kdyflgk"; depends=[checkmate]; }; kdry = derive2 { name="kdry"; version="0.0.2"; sha256="0svmm8ycl3gk0z9w2rps4hdqyrc6k3nl024fbmq3dwa3vlv56rs0"; depends=[data_table doParallel foreach Hmisc magrittr]; }; @@ -12427,21 +12630,20 @@ in with self; { kerDAA = derive2 { name="kerDAA"; version="0.1.1"; sha256="0z27qkfasjian0wwn0q4400153ni5h0c6297j4b0qqjl3ylaqakb"; depends=[mvtnorm]; }; kerSeg = derive2 { name="kerSeg"; version="1.1"; sha256="15j3l9zlyg0hax5ynj9pvf0h60yr1y7wcx5v5zvk64ssmdyw0cdc"; depends=[Rcpp]; }; kerTests = derive2 { name="kerTests"; version="0.1.4"; sha256="135v5lcnvmlcabgqnlcba9q0wc51ajcklz04bknz3psaqv71bp71"; depends=[]; }; - keras = derive2 { name="keras"; version="2.13.0"; sha256="1xjmkrz06rh8767pfqi81fgkljkyb4i7bzllahw7b62b9s2wp38l"; depends=[generics glue magrittr R6 reticulate rlang tensorflow tfruns zeallot]; }; - keras3 = derive2 { name="keras3"; version="0.1.0"; sha256="017rdqpgxg28zpxdx4r63k51qz4sm4nzhdms0gh8cp7fafa34nkv"; depends=[cli fastmap generics glue magrittr reticulate rlang tensorflow tfruns zeallot]; }; - kerastuneR = derive2 { name="kerastuneR"; version="0.1.0.6"; sha256="0n72m527slplgxxp7i5i91cpzbzgrlwmfc8gj2hs3wv41jrr1xl6"; depends=[crayon data_table dplyr echarts4r magick plotly reticulate rjson RJSONIO rstudioapi tensorflow tidyjson]; }; + keras = derive2 { name="keras"; version="2.15.0"; sha256="0xahkgww3dzp8vjz0456sn6ihz0w0q0dz1gnmx07r2vx81isirvc"; depends=[generics glue magrittr R6 reticulate rlang tensorflow tfruns zeallot]; }; + keras3 = derive2 { name="keras3"; version="1.0.0"; sha256="173l57wgnbjwmb8cgsmifk22dwiib50mkx0k68v080iavh4x44g6"; depends=[cli fastmap generics glue magrittr reticulate rlang tensorflow tfruns zeallot]; }; + kerastuneR = derive2 { name="kerastuneR"; version="0.1.0.7"; sha256="05hyhgbc2533az1yrjj8v8idky0xwn20mxd92dna0is6pddf75hv"; depends=[crayon data_table dplyr echarts4r magick plotly reticulate rjson RJSONIO rstudioapi tensorflow tidyjson]; }; kergp = derive2 { name="kergp"; version="0.5.7"; sha256="0cf6acz09cbzhnl26x2z0s674mvikl9lq31mdl2s10y6ah00cpsk"; depends=[doFuture doParallel lattice MASS nloptr numDeriv Rcpp testthat]; }; kerndwd = derive2 { name="kerndwd"; version="2.0.3"; sha256="0lvm007wzhyagyafmq47819hn66riwdcpymn56clc1sgch9i933m"; depends=[]; }; kernelFactory = derive2 { name="kernelFactory"; version="0.3.0"; sha256="001kw9k3ivd4drd4mwqapkkk3f4jgljiaprhg2630hmll064s89j"; depends=[AUC genalg kernlab randomForest]; }; kernelboot = derive2 { name="kernelboot"; version="0.1.10"; sha256="1fv00hbm4l5dxcw8hq2wlfxng49bc8k608ny70g3fy0grkh7r8vy"; depends=[future future_apply parallelly Rcpp]; }; - kernelshap = derive2 { name="kernelshap"; version="0.4.1"; sha256="11h5zxyxzdaw9dkxngcxpirhagd45f9n83v7db9pjcl2bjigip3n"; depends=[foreach]; }; + kernelshap = derive2 { name="kernelshap"; version="0.5.0"; sha256="0wxv9b0h5kzikxglmhcirjpa0dv488ibdxd7n1x5ii6wz2bpzn7i"; depends=[foreach]; }; kernhaz = derive2 { name="kernhaz"; version="0.1.0"; sha256="1cxwjnfyhxfjdbhs21airycs704jic21pdpsbxsx37wkl11cxpai"; depends=[doParallel foreach GA rgl]; }; kernlab = derive2 { name="kernlab"; version="0.9-32"; sha256="1p3gbn9qgc6yqx9irkl8c23khvkx77jl96hk9hn4vsrx6i7g6kk5"; depends=[]; }; kernplus = derive2 { name="kernplus"; version="0.1.2"; sha256="0z5zpj89nw7cdphg6frmjwqjxsl6g95xsa8zgsxmw2q75wwj1saz"; depends=[circular KernSmooth mixtools]; }; kernscr = derive2 { name="kernscr"; version="1.0.6"; sha256="0vk0ppb24la6876sw96kk5s3lw4qqs56m507xncbdvjjgw6pq180"; depends=[MASS mvtnorm]; }; - kernstadapt = derive2 { name="kernstadapt"; version="0.0.2"; sha256="0hbzc0xqlgs3kbblm247hkaic7s9a5slz22slh5dz9ddgfdy1z21"; depends=[misc3d sparr spatstat_explore spatstat_geom spatstat_random spatstat_utils]; }; kesernetwork = derive2 { name="kesernetwork"; version="0.1.0"; sha256="0q42zry3qgg38aas0cxy7lwpj9mj45crcbs353d1d1is0w1avh09"; depends=[config data_table dplyr DT ggplot2 golem htmltools plotly reactable rintrojs rlang shiny shinyBS shinycssloaders shinydashboard shinydashboardPlus shinyhelper shinyWidgets stringr visNetwork yaml]; }; - keyATM = derive2 { name="keyATM"; version="0.5.1"; sha256="00zwjhp0ghw9zbdrn7l6v8kb3ir9abck8328abz7x54xv80v9rlb"; depends=[cli dplyr fastmap fs future_apply ggplot2 ggrepel magrittr MASS Matrix matrixNormal pgdraw purrr quanteda Rcpp RcppEigen rlang stringr tibble tidyr tidyselect]; }; + keyATM = derive2 { name="keyATM"; version="0.5.2"; sha256="1xd5ps0m6ymbdia89n2lr03pjhxhwsjwd648xpq42wkvir8an1nv"; depends=[cli dplyr fastmap fs future_apply ggplot2 ggrepel magrittr MASS Matrix matrixNormal pgdraw purrr quanteda Rcpp RcppEigen rlang stringr tibble tidyr tidyselect]; }; keyToEnglish = derive2 { name="keyToEnglish"; version="0.2.1"; sha256="1wzn93gp1v6y8qh9kypydqadnf6fc7xzjili77b7j402hvb0a8zg"; depends=[jsonlite openssl stringr]; }; keyholder = derive2 { name="keyholder"; version="0.1.7"; sha256="19xbzpanwyfxywzki3m5jvams40ppxkplm7p1jqm6d5rviidiq1j"; depends=[dplyr rlang tibble]; }; keyperm = derive2 { name="keyperm"; version="0.1.1"; sha256="11jwh704iq134imv9p7brnjpvzbqyvd5bdw7id0ggnf7kp2w5rbj"; depends=[Rcpp slam tm]; }; @@ -12459,7 +12661,7 @@ in with self; { kgp = derive2 { name="kgp"; version="1.1.1"; sha256="021113hqs7ack852mksssaac1lj0k4mpf94yiws67qiygmsa693k"; depends=[]; }; kgrams = derive2 { name="kgrams"; version="0.2.0"; sha256="09py3p85ffa03m3xjvwscz4w61k1yxkxqy96im06509bx51qha0q"; depends=[Rcpp RcppProgress Rdpack rlang]; }; kgschart = derive2 { name="kgschart"; version="1.3.5"; sha256="1gdsrmnv8z99cldvig7grlq8gsbv3wpx7zdamw85lz563n4ln94d"; depends=[abind deepnet ggplot2 gridExtra magrittr matrixStats nnet png shiny stringr]; }; - khisr = derive2 { name="khisr"; version="1.0.1"; sha256="0kaq64iz9wz38gh207lr6qw4ljiszh8ra1xg1p8zz1vs1vsip2dg"; depends=[cli curl dplyr httr2 jsonlite magrittr purrr rlang stringr tidyr withr]; }; + khisr = derive2 { name="khisr"; version="1.0.4"; sha256="00myg7anp5c85bnxamwp59q0f2rgj9fqmsnzcj3ijbrqs1fdz1s3"; depends=[cli curl dplyr httr2 janitor jsonlite lifecycle lubridate magrittr purrr rlang stringr tidyr withr]; }; khroma = derive2 { name="khroma"; version="1.12.0"; sha256="1w3rd98m3qk21p8zh3b13x9jbms5zd51il917qxdnxcyc4166n5s"; depends=[]; }; kibior = derive2 { name="kibior"; version="0.1.1"; sha256="1acrdlqbklhhd69i1gija8r3nsdgcnfvk5ngz7b2ndy2f58w5ynf"; depends=[Biostrings data_table dplyr elastic jsonlite magrittr purrr R6 rio Rsamtools rtracklayer stringr tibble tidyr]; }; kidney_epi = derive2 { name="kidney.epi"; version="1.2.0"; sha256="1hd6w7kxim5slmmqalf5sfjg8jcvhyzn5g4gf6h0lmaprsfszhja"; depends=[]; }; @@ -12476,7 +12678,7 @@ in with self; { kirby21_t1 = derive2 { name="kirby21.t1"; version="1.7.0"; sha256="0bv8rrk9jh02h3gill1g2w246j4zv98cjchz7i2c092lvqps8szs"; depends=[kirby21_base]; }; kisopenapi = derive2 { name="kisopenapi"; version="0.0.2"; sha256="0vyz546nwxpz88hbjqp2q8ad9zqp1syln4yzmfdpzj8aqkdc3b0h"; depends=[cli data_table httr2 jsonlite]; }; kissmig = derive2 { name="kissmig"; version="1.0-4"; sha256="0qm9psbi42xv69y2095j6nk51w15x6gl71qjhmfk9jq0r9llfbax"; depends=[raster Rcpp]; }; - kit = derive2 { name="kit"; version="0.0.16"; sha256="17zvwj43vwq7cgw648iwriwq591llccynmd1fsrbx5110g30yjrr"; depends=[]; }; + kit = derive2 { name="kit"; version="0.0.18"; sha256="0iv1bnh9gcxdxm4ydgsgsgrhygy7km94y3azk4q4xmg6s362q7hq"; depends=[]; }; kitagawa = derive2 { name="kitagawa"; version="3.1.2"; sha256="0xn1gwa0whw6glypsf8wwrw0rlzy3xglqr7gdl5c7ldd5v1dffq9"; depends=[Bessel kelvin psd]; }; kiwisR = derive2 { name="kiwisR"; version="0.2.0"; sha256="14fzf72swy221jcbiplss9dh7g03idrpbbyvbxp4bcqpxwr6hbsa"; depends=[dplyr httr jsonlite lubridate purrr tibble]; }; kknn = derive2 { name="kknn"; version="1.3.1"; sha256="1nzkg3dxaiqp87p56wm895qx5xn86hv5hjr73qvl1yiaxiq0x112"; depends=[igraph Matrix]; }; @@ -12484,6 +12686,7 @@ in with self; { klaR = derive2 { name="klaR"; version="1.7-3"; sha256="1rg3p3y984s7k7y14agbh3kxh21rrvan3yzpvfimpnvw04f08v6k"; depends=[combinat MASS questionr]; }; klassR = derive2 { name="klassR"; version="0.2.3"; sha256="0qq290c2n8diy3sgldw64bvsqsddfqpkb2cmqgdn9m6a0m3cg6s0"; depends=[httr jsonlite tm]; }; klausuR = derive2 { name="klausuR"; version="0.12-14"; sha256="1nc84q5jaya4d7bi1m8zwbmyfsxzmv470nq2nj2j8xn5jv6ch4a5"; depends=[psych xtable]; }; + kldest = derive2 { name="kldest"; version="1.0.0"; sha256="0wy2cdkf6jmqw4hw1hs7vdwxvqn5yh4al71b5nvhixby4mck0cm3"; depends=[RANN]; }; kldtools = derive2 { name="kldtools"; version="1.2"; sha256="1r6j6ddylzxsfmymnf8hp7sm8c2ckr8xrdz75xlkgp4fgay106r2"; depends=[]; }; klexdatr = derive2 { name="klexdatr"; version="0.1.2"; sha256="141xs03sb0ixhjpr388fwf5h124mqkbj0k1xqw0whdhrm5051qsz"; depends=[sf]; }; klic = derive2 { name="klic"; version="1.0.4"; sha256="1ggsdq8xcg6hi12rq356myhngx3j475gpwlvpynm1581r4z0lkbk"; depends=[cluster coca Matrix pheatmap RColorBrewer]; }; @@ -12501,12 +12704,13 @@ in with self; { kmodR = derive2 { name="kmodR"; version="0.2.0"; sha256="1khp383k5rr7nnn1fih7wfw6k202igxcj3ddwawyp895qa9w12cj"; depends=[]; }; knitLatex = derive2 { name="knitLatex"; version="0.9.0"; sha256="1igacc2sx8897wmnhh8kngd0fq6zqbi30chy5c8jw60zc38mi3wi"; depends=[knitr]; }; knitcitations = derive2 { name="knitcitations"; version="1.0.12"; sha256="1c7pl8jh61pv0brqanmyfy6s0ipxn312b2hjypcsjaph6b8mhj2q"; depends=[digest httr RefManageR]; }; - knitr = derive2 { name="knitr"; version="1.45"; sha256="1yw4fnzm8lvh6kpcdlvr1fahz7421h5mmaris58zlgn57fjxwbpf"; depends=[evaluate highr xfun yaml]; }; + knitr = derive2 { name="knitr"; version="1.47"; sha256="1kx6g8ddbigwx3bmq771gwi3din3fxjn59l801904kjaz6dq9pgs"; depends=[evaluate highr xfun yaml]; }; knitrBootstrap = derive2 { name="knitrBootstrap"; version="1.0.3"; sha256="157mn2gm7djfiw1b55vdr2ylrmgxlpfg95bmm82ghv5g6vr26smd"; depends=[knitr markdown rmarkdown]; }; knitrProgressBar = derive2 { name="knitrProgressBar"; version="1.1.0"; sha256="18v5jrscfrin3mcs63bpj0q1drxk3zkhlbw93sqh0qrq04d4x02v"; depends=[R_oo R6]; }; knitrdata = derive2 { name="knitrdata"; version="0.6.1"; sha256="1am79r4rkrw7vjmyzc0cq4p52l2ypdw99rfhrvdsaq11yllx08mx"; depends=[knitr xfun]; }; knitxl = derive2 { name="knitxl"; version="0.1.0"; sha256="1l0qq9mqfwkxkkms8xrmf7wzrgg27syrndng7vrrymda67pcxnl4"; depends=[commonmark glue knitr magrittr openxlsx purrr R6 readbitmap readr stringr xml2 yaml]; }; knn_covertree = derive2 { name="knn.covertree"; version="1.0"; sha256="0msfcmwydws7q7m5jdb0dxab0nkbl7mq5llg6v3r4qrnlvrdggvz"; depends=[Matrix Rcpp RcppEigen]; }; + knnmi = derive2 { name="knnmi"; version="1.0"; sha256="16cdga8q6vl289yh7520khyfsg9aih7crq9wa13sn6lnimfah49r"; depends=[]; }; knnp = derive2 { name="knnp"; version="2.0.0"; sha256="0qgq8la3zndlb1wwqv9b2kw52y9ns36pi4ds68pkm81bhzq5nqis"; depends=[doParallel foreach forecast parallelDist plyr]; }; knnwtsim = derive2 { name="knnwtsim"; version="1.0.0"; sha256="1sxz1hzbx41z3w1qf2zf8fmf3pd64jrnc37ndxx28yc70vhwjd1n"; depends=[]; }; knockoff = derive2 { name="knockoff"; version="0.3.6"; sha256="1fj6n39i8wfkc16pmkl8jli81nny8sjjfdgklys4mbcavcmlrv5g"; depends=[corpcor glmnet gtools Matrix Rdsdp RSpectra]; }; @@ -12519,7 +12723,7 @@ in with self; { kohonen = derive2 { name="kohonen"; version="3.0.12"; sha256="188cxw2fvpfr3dyi8g52igcyc8d5jffyn6rhc84dja52da8lp520"; depends=[Rcpp]; }; kokudosuuchi = derive2 { name="kokudosuuchi"; version="1.0.0"; sha256="0h4r7bd9989pahx34lc2i5h1f8nipir941l7sahhgz28lskfkc3h"; depends=[glue rlang sf stringr tibble]; }; komaletter = derive2 { name="komaletter"; version="0.5.0"; sha256="1wk1bhn699295pjj0ap6qkh11khdbx0nfxih74w1in53k4d3dajg"; depends=[rmarkdown]; }; - konfound = derive2 { name="konfound"; version="0.5.0"; sha256="03phg563qigb8j8r35aj5v1r2m2v2lfncipqv684hskfx2bk9vww"; depends=[broom broom_mixed crayon dplyr ggplot2 ggrepel lavaan lme4 margins pbkrtest purrr rlang tibble tidyr]; }; + konfound = derive2 { name="konfound"; version="0.5.1"; sha256="0gyz5n6x0brkv7c7j1k1fgna8bm1xl9i32qyxsl6h3lhqqi185dh"; depends=[broom broom_mixed crayon dplyr ggplot2 ggrepel lavaan lme4 pbkrtest purrr rlang tibble tidyr]; }; kosel = derive2 { name="kosel"; version="0.0.1"; sha256="1gdsy4i58byqxddpsm5nk1r3hlgik5gs2b8jqcm8n1r4ib6pg0ay"; depends=[glmnet ordinalNet]; }; kosis = derive2 { name="kosis"; version="0.0.1"; sha256="0nxrv1a48smgp36zcny38yfcz5dkx1dic4zicqkpvm93vf7jqn5i"; depends=[data_table httr jsonlite tibble]; }; kpcalg = derive2 { name="kpcalg"; version="1.0.1"; sha256="1gd5bisyfwb12l9jmwhi2arlxrabc01vgv4m1qqs23vybsd6yh52"; depends=[energy graph kernlab mgcv pcalg RSpectra]; }; @@ -12547,7 +12751,7 @@ in with self; { kuiper_2samp = derive2 { name="kuiper.2samp"; version="1.0"; sha256="0gcgayh7qdic9zprdvs6r8qvpqs467zrm0qzp2acb7alcp01jhpi"; depends=[]; }; kutils = derive2 { name="kutils"; version="1.73"; sha256="0xqg1s48afpn2w0mlqfwz3sj1gdjf05cpxq4z9r01k1476lvh6c9"; depends=[foreign openxlsx plyr RUnit xtable]; }; kvh = derive2 { name="kvh"; version="1.4.2"; sha256="0lx7p2rgvcjgg99chcan0qb9hafx226sqvdb1g1xpkdwvzbyxci8"; depends=[Rcpp]; }; - kyotil = derive2 { name="kyotil"; version="2024.1-30"; sha256="1gp9ijpar560ysssdf1xc96h4a1fvdi130pmaqdxq0r2wfxyn1m3"; depends=[]; }; + kyotil = derive2 { name="kyotil"; version="2024.5-8"; sha256="1jcnk7bx12hjb8ycm1v93bsksgmcwb6m8kn7l4ipc00qwkzhs6r2"; depends=[]; }; kza = derive2 { name="kza"; version="4.1.0.1"; sha256="1vx7wc8iwmr9d6ff2kcy6y3nyfj6jfzv4hxkv1fsas0rbjgfick4"; depends=[]; }; kzs = derive2 { name="kzs"; version="1.4"; sha256="1srffwfg0ps8zx0c6hs2rc2y2p01qjl5g1ypqsbhq88vkcppx1w9"; depends=[lattice]; }; l0ara = derive2 { name="l0ara"; version="0.1.6"; sha256="1cv48rbq080z7zx32hmlkpq7mi5axr09a1hyv3knl1vb9gql4qjq"; depends=[Rcpp RcppArmadillo]; }; @@ -12562,9 +12766,9 @@ in with self; { labelVector = derive2 { name="labelVector"; version="0.1.2"; sha256="06pqkgn852min2mqhjkia6qqdwkp8cz32lbxzp3a2b8bcggbijn4"; depends=[]; }; labeleR = derive2 { name="labeleR"; version="0.1.2"; sha256="0a70jq7r9nvh84kaqig05qgv1yliv8vgf45f2nbpdq4slr5aq3rc"; depends=[rmarkdown]; }; labeling = derive2 { name="labeling"; version="0.4.3"; sha256="1wk4wa1s8f17b5lf8vs5hxsmyadp2ccmyg4hamq7sdvlrk14yby6"; depends=[]; }; - labelled = derive2 { name="labelled"; version="2.12.0"; sha256="1f6jh1mrbwb3v1kc49pb65sf5ffqs0h9vizpig4r5rhhv4n3q17y"; depends=[dplyr haven lifecycle rlang stringr tidyr vctrs]; }; + labelled = derive2 { name="labelled"; version="2.13.0"; sha256="0dx2zwympwlys8ndyfz2qki3xywz7sqxfkbd8y52zdj34fj84bly"; depends=[dplyr haven lifecycle rlang stringr tidyr tidyselect vctrs]; }; labelmachine = derive2 { name="labelmachine"; version="1.0.0"; sha256="18l7argmf7d60cv34w7acjg4bk08nhi2cc5p61sx2zmq28v8nndr"; depends=[yaml]; }; - labelr = derive2 { name="labelr"; version="0.1.3"; sha256="0naalvy2bzi0hqnzr1aqm3r4dkkz293n7f9djvy9i4y0qv5gl9pj"; depends=[]; }; + labelr = derive2 { name="labelr"; version="0.1.6"; sha256="1nf1gr876zr0l9nxisvy1h7k0f3a9f49g257lh967n9iin6vrj4q"; depends=[]; }; lablaster = derive2 { name="lablaster"; version="1.0.1"; sha256="082gyfqaakl08d016p7sk1qapdkpry82sbxcsj46z50ls7sza3ab"; depends=[ggplot2 magrittr rlang scales smooth]; }; labourR = derive2 { name="labourR"; version="1.0.0"; sha256="0skr8qr1m849l3gpcsn5bjxyjczlzzmsm2j6xcmxv33lf95qg6gi"; depends=[cld2 data_table magrittr stopwords stringdist]; }; labsimplex = derive2 { name="labsimplex"; version="0.1.2"; sha256="07is5vi1y7qw9fjhhjf65z6fm77v26qgy908zhhp2581qqyn0b5s"; depends=[ggplot2 scatterplot3d]; }; @@ -12575,17 +12779,20 @@ in with self; { lactater = derive2 { name="lactater"; version="0.2.0"; sha256="11wv998mapys2hgwwdgvgllcjsd4y7g7p19kg419xlx3py0c077p"; depends=[broom dplyr forcats ggplot2 ggtext lubridate magrittr minpack_lm patchwork pracma rlang segmented stringr tidyr]; }; lactcurves = derive2 { name="lactcurves"; version="1.1.0"; sha256="1ksllpgz519gzrs8gwfgg7743vj3j7ikmbwgisdjs77sdxxl7xyz"; depends=[orthopolynom polynom]; }; lacunaritycovariance = derive2 { name="lacunaritycovariance"; version="1.1-7"; sha256="10l5q4plnh1nnbcb3zh68mglrilcmlxsviznli8w8vzj2h5yfnhm"; depends=[RcppRoll spatstat spatstat_explore spatstat_geom spatstat_random]; }; + lacunr = derive2 { name="lacunr"; version="1.0.1"; sha256="132k5vis9k3snhfy3zl0py039pm1b12k70qijdkq11knhlng7b1b"; depends=[abind data_table ggplot2 Rcpp RcppArmadillo RcppThread rlang]; }; laeken = derive2 { name="laeken"; version="0.5.3"; sha256="02z8jyya6xv0pyfqaalbry174fw44h13s7p1jk5b4h9a9x4myjb0"; depends=[boot MASS]; }; lagged = derive2 { name="lagged"; version="0.3.2"; sha256="1ss69jdmfz2al131mvhflaa4hcg71a0balpnc8vkf0f9svhkcs52"; depends=[]; }; lagsarlmtree = derive2 { name="lagsarlmtree"; version="1.0-1"; sha256="1v3a580scxb1v5na3ab3ax9qlzbnay7nhm3ln5l8f9zgsqrg5lyh"; depends=[Formula partykit spatialreg]; }; lakemorpho = derive2 { name="lakemorpho"; version="1.3.2"; sha256="11bvrr4h9bxa01sf6qilgglhljmfpfil5yz1xrwlyaiv091gvlfp"; depends=[cluster geosphere raster sf sp]; }; laketemps = derive2 { name="laketemps"; version="0.5.1"; sha256="04742r379bzgbfr4243wwkb26cvfmnw50jzgygq7vblq00grzska"; depends=[dplyr reshape2]; }; + lakhesis = derive2 { name="lakhesis"; version="0.0.1"; sha256="0jbzzpvqid3samq90m3d8p0ac2cfh1qaqiglr19xpzlif63sl34y"; depends=[bslib ca ggplot2 Rdpack readr shiny shinydashboard]; }; lamW = derive2 { name="lamW"; version="2.2.3"; sha256="0jq3xq2ll4lpj8f5aqwazqlb978nzyk7hln4iwlzrlkkcqc35qm1"; depends=[Rcpp RcppParallel]; }; lambda_r = derive2 { name="lambda.r"; version="1.2.4"; sha256="1mh1g0gsd58gng0hb29vww2yqb2jfs07kba5kxnnqck5j3izwlnj"; depends=[formatR]; }; lambdaTS = derive2 { name="lambdaTS"; version="1.1"; sha256="0fb44q5997588y6cv10kq3jv3qvwhg99q15i4cka4hsww08i9ib2"; depends=[abind bizdays car fANCOVA ggplot2 imputeTS lubridate modeest narray purrr readr scales stringr tictoc torch]; }; lambdr = derive2 { name="lambdr"; version="1.2.5"; sha256="1vbaxy15a925lmc9a6d0b9yxivw0gd6pw4a89acg797y84fgmyl4"; depends=[httr jsonlite logger]; }; lamle = derive2 { name="lamle"; version="0.3.1"; sha256="08fsylhqpk8hqm9kbqc4vlhmpaddr9cpgjjxvlfc9xqhnyhg7p3d"; depends=[fastGHQuad mvtnorm numDeriv Rcpp RcppArmadillo]; }; lamme = derive2 { name="lamme"; version="0.0.1"; sha256="1x9jl79iqikpjixajly1k8w2nkzskns2m0v242giknl0ikw298h1"; depends=[]; }; + lancor = derive2 { name="lancor"; version="0.1.2"; sha256="1wb50jy9qkb7knkmg2ghjb6h1s1c0y8mghaxn41pmbm9jzk8q6ym"; depends=[acepack arrangements boot sn]; }; landest = derive2 { name="landest"; version="1.2"; sha256="1cr1qiz42j64yxpbpyll1l3lxazh1qq0ia4mh0qdyjk14kyyf9q0"; depends=[survival]; }; landform = derive2 { name="landform"; version="0.2"; sha256="0i99glylj0nz3r5i0p22ng9aygmjkh7q2ynw02z7jm3bfpw0wmv0"; depends=[terra]; }; landmix = derive2 { name="landmix"; version="1.0"; sha256="0qa5l82102r8y7sj7v5vcpqg93j2bpszp7fhlbxrzjxpisdh9vgx"; depends=[]; }; @@ -12593,7 +12800,7 @@ in with self; { landpred = derive2 { name="landpred"; version="1.2"; sha256="0xbmr896fyl2gvh6vy7fy7aixa5n2ycvwm509z6ys5wh0r8p296k"; depends=[survival]; }; landsat = derive2 { name="landsat"; version="1.1.2"; sha256="13xjpw9hd1hhcs6d7xw9dc36808zjyqw3isn0ayafpww0wvv073n"; depends=[lmodel2 mgcv sp]; }; landscapeR = derive2 { name="landscapeR"; version="1.2"; sha256="1zm5mj861ycbc2m28yjqnkifx8grc4l718mf8r422m78jfakvcjy"; depends=[raster Rcpp]; }; - landscapemetrics = derive2 { name="landscapemetrics"; version="2.1.1"; sha256="0l5slwq0mgkchs1pn3ns4qzgsf994xn73waqsvrwl4vb99a3d2aj"; depends=[cli ggplot2 Rcpp RcppArmadillo terra tibble]; }; + landscapemetrics = derive2 { name="landscapemetrics"; version="2.1.2"; sha256="0inzgd76wm63d35hwxz6if0y5glyl7v3zyl26z0c3sxxpnpq14bm"; depends=[cli ggplot2 Rcpp RcppArmadillo terra tibble]; }; landscapetools = derive2 { name="landscapetools"; version="0.5.0"; sha256="11zp6r414nkj8vhsbryzhkxmpal2bva8msaxf1v69xax70ilxyf1"; depends=[ggplot2 raster Rcpp tibble]; }; landsepi = derive2 { name="landsepi"; version="1.4.0"; sha256="0hd4cvik5bfw2yjls4wxnzxq7ylcg69yz34ncj7c3zrg4agka1nm"; depends=[DBI deSolve doParallel fields foreach Matrix mvtnorm Rcpp RSQLite sf sp splancs testthat]; }; langevitour = derive2 { name="langevitour"; version="0.7"; sha256="1q1g2rz5z7wpk5fb0d2rcxw8hi8frs9360n2z6zv8d376r9i1lfr"; depends=[assertthat crosstalk htmlwidgets RANN]; }; @@ -12603,7 +12810,7 @@ in with self; { languageserversetup = derive2 { name="languageserversetup"; version="0.1.2"; sha256="05i8kcp1zpbkrqpq5vxxvxk9p7phyngxl0q6v76va0i7qnmy1v7a"; depends=[]; }; lans2r = derive2 { name="lans2r"; version="1.2.0"; sha256="0hk7rklkic4frp5w6k9kn5xi8hf3s87bgbjm58ca79sh3iyl0cnv"; depends=[dplyr ggplot2 R_matlab reshape2 rlang tidyr]; }; lar = derive2 { name="lar"; version="0.1-2"; sha256="0qda0y4ag10kg83wxs3z754kc8c1dg2rwciy64klk7an4ln43i5b"; depends=[data_table treemap xlsx]; }; - lares = derive2 { name="lares"; version="5.2.5"; sha256="0nri8k87yr49p3h6szjsj73v6dlf1w62dd59vmj47sr1c83avnla"; depends=[dplyr ggplot2 httr jsonlite lubridate openxlsx patchwork pROC rlang rpart rpart_plot rvest stringr tidyr yaml]; }; + lares = derive2 { name="lares"; version="5.2.8"; sha256="1859nwb7ymdamk7akwrmq011var821cww0bg6k89d5sjhs529jd7"; depends=[dplyr ggplot2 httr jsonlite lubridate openxlsx patchwork pROC rlang rpart rpart_plot rvest stringr tidyr yaml]; }; lareshiny = derive2 { name="lareshiny"; version="0.0.3"; sha256="00pmlq3gz06p1g6xzx5y6n7ybljrhhmjnhi25chv3ii13r3nlfvf"; depends=[dplyr DT htmltools miniUI shiny shinydashboard shinyWidgets]; }; lars = derive2 { name="lars"; version="1.3"; sha256="17al1g0pvfz9frs2kxicqr8dyp7ciz3x87yx2l4lqd53ls6nm7n6"; depends=[]; }; lassopv = derive2 { name="lassopv"; version="0.2.0"; sha256="0yawnjw063jypk3riy9xab9cmliv6c9dnabi18670khd3gzb2r9z"; depends=[lars]; }; @@ -12611,6 +12818,7 @@ in with self; { latcontrol = derive2 { name="latcontrol"; version="0.1.0"; sha256="0y5amp5w8faw69lsi55akqfzgr8bwacvyi0whkxz2ik9dlxcwv3b"; depends=[lavaan]; }; latdiag = derive2 { name="latdiag"; version="0.3"; sha256="13wk8vhiwr9drcx5f4wlgbin6hc83zv54yr4h3qhjagm3hxcxbw0"; depends=[Rdpack]; }; latenetwork = derive2 { name="latenetwork"; version="1.0.1"; sha256="0isqjsivywv51h1lf4fwvscib8sfgnpvvdq6gj9zzz7nrjpgf7k1"; depends=[igraph statip]; }; + latentFactoR = derive2 { name="latentFactoR"; version="0.0.6"; sha256="0zcvy7dafigv2zwjyyiwrs7zjn2j933ynfbwsk6qgzfbw1khh9bk"; depends=[BBmisc EGAnet fspe googledrive ineq lavaan Matrix mlr mvtnorm psych rstudioapi xgboost]; }; latentcor = derive2 { name="latentcor"; version="2.0.1"; sha256="0c8ygjdqxb9zs6b42ncqh5va80vxamdphja18x8dazygynmcgjr0"; depends=[doFuture doRNG fMultivar foreach future geometry ggplot2 heatmaply MASS Matrix microbenchmark mnormt pcaPP plotly]; }; latentgraph = derive2 { name="latentgraph"; version="1.1"; sha256="11h7nrd81licvdikiwwfkz4x9i7drz09w5ns672b7fw0pj4qqgsr"; depends=[glmnet MASS pracma Rcpp RcppArmadillo]; }; latentnet = derive2 { name="latentnet"; version="2.11.0"; sha256="1vd004bqcgjip2wrs5znk15yy45ay07cv4pa94x93kyri64v1g2g"; depends=[abind coda ergm MASS mvtnorm network sna statnet_common]; }; @@ -12618,17 +12826,17 @@ in with self; { latex2exp = derive2 { name="latex2exp"; version="0.9.6"; sha256="1jp0l0hi5kv4yh28qg2yj2z5fj33gnfvdz2g2v4ibn516fj2d636"; depends=[magrittr stringr]; }; latexdiffr = derive2 { name="latexdiffr"; version="0.2.0"; sha256="02myc3pgf8zmfd6ljknqlqakhhgb1dna2rbfa89v85gmf4fhsshh"; depends=[assertthat fs rprojroot]; }; latexpdf = derive2 { name="latexpdf"; version="0.1.8"; sha256="1drpb4mal389k7z3pcfkz68n3q5z1qjqdwp7q7k25awpvxjbrfbg"; depends=[]; }; - latrend = derive2 { name="latrend"; version="1.6.0"; sha256="06q23pl3x4fgxfaypl0xp74mmhwf31rq2yqp4fipcscyqcf1223c"; depends=[assertthat data_table foreach magrittr matrixStats R_utils Rdpack rlang rmarkdown]; }; + latrend = derive2 { name="latrend"; version="1.6.1"; sha256="1g5hhl8himv1g3v70vs42jsxn1h04knh73m6yhzkgc2bnj16hr2r"; depends=[assertthat data_table foreach magrittr matrixStats R_utils Rdpack rlang rmarkdown]; }; latte = derive2 { name="latte"; version="0.2.1"; sha256="1dcwxxj3yran5a3a8vvdfmx4ap69ql2jncxvmci4p4vcw4ki9j9g"; depends=[dplyr ggplot2 glue magrittr memoise mpoly stringr usethis]; }; lattice = derive2 { name="lattice"; version="0.22-6"; sha256="1xq09lfjlca6c7mn412hjjav0q66p7wmjrwx5f3ygv3jwh8p4dsb"; depends=[]; }; latticeExtra = derive2 { name="latticeExtra"; version="0.6-30"; sha256="1vcy4xr6c53nbvnxikjnlf5kd3n5hf4d8dzj5d41hj322dlsfl65"; depends=[interp jpeg lattice MASS png RColorBrewer]; }; lava = derive2 { name="lava"; version="1.8.0"; sha256="0zz8hzmqd4qa14y52c8gw9hr6gn0d7srffrddxrmhb01rbp9dfcd"; depends=[cli future_apply numDeriv progressr SQUAREM survival]; }; lavaSearch2 = derive2 { name="lavaSearch2"; version="2.0.3"; sha256="1z5aaajlgmn6i9jvziz2blrxkrnqfsyfgpflblxac5ljwmnw7yvn"; depends=[abind doParallel ggplot2 lava MASS Matrix multcomp mvtnorm nlme Rcpp RcppArmadillo reshape2 sandwich]; }; - lavaan = derive2 { name="lavaan"; version="0.6-17"; sha256="1bppbv17b35h48vfci6zplix9zb5isi210za52cs9yyc68g2acwj"; depends=[MASS mnormt numDeriv pbivnorm quadprog]; }; + lavaan = derive2 { name="lavaan"; version="0.6-18"; sha256="0lfz92dgqna6r6fcn2slads0gkqanqbny85jih9j08sadk6wl1xr"; depends=[MASS mnormt numDeriv pbivnorm quadprog]; }; lavaan_shiny = derive2 { name="lavaan.shiny"; version="1.2"; sha256="0qgswdpxb5af0l3v70sg0jrgsdwr88gz6zzwbk3pw5x6qnvnwb6r"; depends=[lavaan psych semPlot shiny shinyAce]; }; lavaanExtra = derive2 { name="lavaanExtra"; version="0.2.0"; sha256="0q443wx983vy2i4bn39psw2nwaqzjncdpm7lpwsj7bifjnsic5sb"; depends=[insight lavaan]; }; lavaanPlot = derive2 { name="lavaanPlot"; version="0.8.1"; sha256="08isy888r5ispw2i74arnkc52qdba28yl6mzypx6j33rkbnbxrai"; depends=[DiagrammeR dplyr lavaan magrittr purrr rlang stringr]; }; - lavacreg = derive2 { name="lavacreg"; version="0.2-1"; sha256="0hfkwsgkws1h910b3dgp7ka1mqmb5dnikrdjcsn99vfm61mq0rxk"; depends=[fastGHQuad pracma Rcpp RcppArmadillo SparseGrid]; }; + lavacreg = derive2 { name="lavacreg"; version="0.2-2"; sha256="0jbqf52j5iva39lf9w34aabg6wh5i8rczln3l7pbdyz9lmvmgycc"; depends=[fastGHQuad pracma Rcpp RcppArmadillo SparseGrid]; }; lawstat = derive2 { name="lawstat"; version="3.6"; sha256="1bmv3aw4z07ypsb1z65kwdybg6c268vdy46q9nri8xsmrby3fw8b"; depends=[Kendall mvtnorm Rdpack]; }; lax = derive2 { name="lax"; version="1.2.3"; sha256="1ddl7vgf8xmp4scpiifxvjzzqifcp9q6xiw7kg4cl204scm5z39w"; depends=[chandwich exdex numDeriv revdbayes sandwich]; }; lay = derive2 { name="lay"; version="0.1.3"; sha256="0cg3sxbphmfyzdbqrgij5nm8xvhp5dizbjx82pl0xx1ms5p40b0r"; depends=[purrr rlang tibble vctrs]; }; @@ -12643,7 +12851,7 @@ in with self; { lazytrade = derive2 { name="lazytrade"; version="0.5.3"; sha256="055wyaf36f5g27wly24i0sbf2k0rriga8xcgn241gszlzagrnh55"; depends=[cluster dplyr ggplot2 h2o lifecycle lubridate openssl readr ReinforcementLearning stringr tibble]; }; lba = derive2 { name="lba"; version="2.4.52"; sha256="04w275da78naxz1imbw78kpd0rns4ipmjgfs4f23h1q8zp5711fw"; depends=[alabama MASS plotrix rgl scatterplot3d]; }; lbfgs = derive2 { name="lbfgs"; version="1.2.1.2"; sha256="04fx9v1dn8rn09h98zxp71zcxidjmhmcv190h7mvbj3pqf3dh2bv"; depends=[Rcpp]; }; - lbfgsb3c = derive2 { name="lbfgsb3c"; version="2020-3.3"; sha256="0wk3jk94rrdjy5jj5d4a7szyx9xa4pw42s4ycwbcg23b4vas9r30"; depends=[numDeriv Rcpp RcppArmadillo]; }; + lbfgsb3c = derive2 { name="lbfgsb3c"; version="2024-3.4"; sha256="1dsacah7srkg0i9anl283244mvi8chkjkfplzj00dfzcj8nv2cgm"; depends=[numDeriv Rcpp RcppArmadillo]; }; lbm = derive2 { name="lbm"; version="0.9.0.2"; sha256="0mn0k5liwrnbsl5lf4k5b8j2y79bkk689v8wrvcmj3l7q2abaxhf"; depends=[]; }; lboxcox = derive2 { name="lboxcox"; version="1.2"; sha256="0jklfgw7dwslafsivb9z2q1vgv367kk9gbgjabz04y0kracxaa8q"; depends=[doParallel dplyr foreach MASS maxLik R_utils survey]; }; lbreg = derive2 { name="lbreg"; version="1.3"; sha256="1z9vixf6sl0k9lizngc3859lk32srkk1d8y133sl6s37ppmqb4s2"; depends=[MASS]; }; @@ -12657,11 +12865,11 @@ in with self; { lcpm = derive2 { name="lcpm"; version="0.1.1"; sha256="0pqmizli5rhyaxvxrjycf8d5kqrm23i3vdz00r8zmijjpiz2p9s2"; depends=[Matrix numDeriv plyr]; }; lcra = derive2 { name="lcra"; version="1.1.5"; sha256="0bzv6m2113hzxxlinicc2x296vi7q5z1d31gqzri70klwn9qqy1l"; depends=[coda rjags rlang]; }; lcsm = derive2 { name="lcsm"; version="0.3.2"; sha256="13iy0d37rqlw7k6xgb2rsd2pz1rrjbc5c14gqaxgwmz9pk93dlxp"; depends=[broom cli dplyr ggplot2 lavaan magrittr purrr rlang semPlot stringr tibble tidyr]; }; - lctools = derive2 { name="lctools"; version="0.2-8"; sha256="03k6d78lzc8jxndnwh39h6fagr6ibhr9354vzvsw873912sxs8c9"; depends=[MASS pscl reshape sp weights]; }; + lctools = derive2 { name="lctools"; version="0.2-10"; sha256="0gv8glxwdjpmx9cvadf8ww9k79wps107h29i02mcsa43mvcb22k1"; depends=[MASS pscl reshape sp weights]; }; lcyanalysis = derive2 { name="lcyanalysis"; version="1.0.4"; sha256="0pwr6r8nbvmppqwd9gxap6v49l7iaq5syaq11spxp5yc2h3pa2rg"; depends=[quantmod TTR xts zoo]; }; - lda = derive2 { name="lda"; version="1.4.2"; sha256="03r4h5kgr8mfy44p66mfj5bp4k00g8zh4a1mhn46jw14pkhs21jn"; depends=[]; }; + lda = derive2 { name="lda"; version="1.5.2"; sha256="1m0g2mz7rhjsp6pm784qjngzrb6kp69zjb85fflm48q0drw59lwm"; depends=[]; }; ldaPrototype = derive2 { name="ldaPrototype"; version="0.3.1"; sha256="1gnwss71488837ry9zhri7yv68hhnrckrn8qb1b8sszvsch5apan"; depends=[batchtools checkmate colorspace data_table dendextend fs future lda parallelMap progress]; }; - ldamatch = derive2 { name="ldamatch"; version="1.0.2"; sha256="1nzl9pf223z2nwpaw5721qw8p1va70avpjwj1myv9q054zaspmgb"; depends=[car data_table entropy foreach gmp iterators iterpc kSamples RUnit]; }; + ldamatch = derive2 { name="ldamatch"; version="1.0.3"; sha256="1vksgild5j7g1skx28jki9kjknc08h2xf715azyfqgbmvbkkljgc"; depends=[car data_table entropy foreach gmp iterators iterpc kSamples RUnit]; }; ldatuning = derive2 { name="ldatuning"; version="1.0.2"; sha256="0367y6k5i4sccwfcm89xyc62qblrlwnm6hsa2jf346rnrfz9hkkc"; depends=[ggplot2 reshape2 Rmpfr scales slam topicmodels]; }; ldbod = derive2 { name="ldbod"; version="0.1.2"; sha256="1ylzkswnhf4jnjx2ijasy49pj78ffx333za0bx2fnf3g85kicqiv"; depends=[mnormt RANN]; }; ldbounds = derive2 { name="ldbounds"; version="2.0.2"; sha256="19xx8a4qn9lz8r9hf344xn2rhr177nzscivxgsai9n3gwjc893d9"; depends=[]; }; @@ -12677,10 +12885,10 @@ in with self; { leafdown = derive2 { name="leafdown"; version="1.2.0"; sha256="0gpb37yjsjirglndld84bky83yyhy16qfk1wawkfpjv8j9pdfnqf"; depends=[checkmate leaflet magrittr R6 shiny shinyjs]; }; leafem = derive2 { name="leafem"; version="0.2.3"; sha256="1qvmygxm5957k7mnbi05vs3sjcwng9f18hbxx6143nl38fm5pzfy"; depends=[base64enc geojsonsf htmltools htmlwidgets leaflet png raster sf]; }; leafgl = derive2 { name="leafgl"; version="0.1.1"; sha256="042jps6zh4xr0xj19a7fbgrcb6q6gsw2q5f191lyskr8iajdrz1h"; depends=[geojsonsf htmltools jsonify leaflet sf]; }; - leaflegend = derive2 { name="leaflegend"; version="1.2.0"; sha256="026ng3lvlpb313sck0wic2nvlh5kd9li83f8md88zi54wz4m7gl7"; depends=[base64enc htmltools htmlwidgets leaflet]; }; - leaflet = derive2 { name="leaflet"; version="2.2.1"; sha256="1gfsf7bsmp418zv4gpk5i1xg5vvgqwpdkznnvj5x0mk4rcqk1i81"; depends=[crosstalk htmltools htmlwidgets jquerylib leaflet_providers magrittr png raster RColorBrewer scales sp viridis xfun]; }; + leaflegend = derive2 { name="leaflegend"; version="1.2.1"; sha256="1lh6c0v365aaqygwfgzbgiy3g3wlq6w0nw0drdlhcgckw7a68mk2"; depends=[base64enc htmltools htmlwidgets leaflet]; }; + leaflet = derive2 { name="leaflet"; version="2.2.2"; sha256="1sxq38dcjhn1bkav7fxglzk8nwi5p32jia2nhijcq5j1766pp1yj"; depends=[crosstalk htmltools htmlwidgets jquerylib leaflet_providers magrittr png raster RColorBrewer scales sp viridisLite xfun]; }; leaflet_esri = derive2 { name="leaflet.esri"; version="1.0.0"; sha256="01bwzxh2rdhpvvazaxsji8axl765q1ix1fdxla6i61nvqkpw3dz1"; depends=[htmltools leaflet leaflet_extras]; }; - leaflet_extras = derive2 { name="leaflet.extras"; version="1.0.0"; sha256="0li7651cwlz7sg04xdrmvhkrf0n6amaydck7gqz0wkb6wq8hcyzw"; depends=[htmltools htmlwidgets leaflet magrittr stringr]; }; + leaflet_extras = derive2 { name="leaflet.extras"; version="2.0.0"; sha256="0bhqid6sqgfmk8ipjy34h54la0mbx02169rc7l3h3fkqs8ffpw0c"; depends=[htmltools htmlwidgets leaflet magrittr stringr]; }; leaflet_extras2 = derive2 { name="leaflet.extras2"; version="1.2.2"; sha256="0r17wj2qg85y6wcszmbq6nf49k5ddsfprqdscqg2bwdszxrvw2c9"; depends=[htmltools leaflet magrittr]; }; leaflet_minicharts = derive2 { name="leaflet.minicharts"; version="0.6.2"; sha256="0pmgr9c3z5zdm13kb17ldjdl3i792mv20gbxzn1asfyf7csp7jxi"; depends=[htmltools leaflet]; }; leaflet_providers = derive2 { name="leaflet.providers"; version="2.0.0"; sha256="0rl69bfx2l10x80rl8cppqch3fnd05sk9w29h8589jc8h3ffmkn5"; depends=[htmltools]; }; @@ -12688,22 +12896,24 @@ in with self; { leafpop = derive2 { name="leafpop"; version="0.1.0"; sha256="1ccxglglfxbm9rlz1lx0jrp6h38w6gld3rld0cxdjjnvw636hm3f"; depends=[base64enc brew htmltools htmlwidgets sf svglite uuid]; }; leafsync = derive2 { name="leafsync"; version="0.1.0"; sha256="0p6pb7w5yz2wj33kdh7ixii9f6b8zv018psp6b7ifr7npgdxi3vx"; depends=[htmltools htmlwidgets leaflet]; }; leaftime = derive2 { name="leaftime"; version="0.2.0"; sha256="10ij06rq7kmfnzfa629l2kskwj96lh87m00wi9b1aq15b5h7bxls"; depends=[htmltools htmlwidgets leaflet]; }; + leakyIV = derive2 { name="leakyIV"; version="0.0.1"; sha256="1pdxyw9sd78nwy70xlrckdjvdgrhcdjywrnbmilrffpzhb6hgky0"; depends=[corpcor data_table foreach glasso Matrix mvnfast]; }; leanpubr = derive2 { name="leanpubr"; version="0.3.1"; sha256="0c8pmzn25cwv0wccf30zrrqrs5amlk8iqyyva9vp9976wzwgbxrx"; depends=[httr jsonlite xml2]; }; leapp = derive2 { name="leapp"; version="1.3"; sha256="0w6pi527s4fig50zlwhqsp6zfdgqyyislm01vvp5rvxg7kskr5xr"; depends=[corpcor MASS sva]; }; - leaps = derive2 { name="leaps"; version="3.1"; sha256="1dn3yl1p03n0iynd1vsdkrr0fhmvgrmfkv37y7n371765h83lz1x"; depends=[]; }; + leaps = derive2 { name="leaps"; version="3.2"; sha256="1bbgm6l12gj1y28ks21awxphpmp07hb0ffiyrw7dqp3fcyxvxmm0"; depends=[]; }; learnPopGen = derive2 { name="learnPopGen"; version="1.0.4"; sha256="04wxina3n2bspxdp3d4bgqrwyxqxx46pfp8zgzr3rsj89ml8if9l"; depends=[gtools phytools]; }; learningr = derive2 { name="learningr"; version="0.29.1"; sha256="0z3rs7y9yd81f14sbk3dwq1ifr4vca2s3kl1gnkqlns3dycgyp08"; depends=[plyr]; }; learningtower = derive2 { name="learningtower"; version="1.0.1"; sha256="041hx9a1jq5aw6gbgb1xj8pl9dhc3kb85cx670nkc3ngaj4j2g17"; depends=[dplyr tibble]; }; learnr = derive2 { name="learnr"; version="0.11.5"; sha256="01xig6ijsjnkwdjh03zdp86mqm5pjlqp9br34pn644rf98qg8k2y"; depends=[checkmate digest ellipsis evaluate htmltools htmlwidgets jsonlite knitr lifecycle markdown promises rappdirs renv rlang rmarkdown rprojroot shiny withr]; }; - learnrbook = derive2 { name="learnrbook"; version="1.0.2-1"; sha256="1m642zwbn10p355s8rhdrh61q9n85mh8xj4jhvramii2f09bzyhn"; depends=[]; }; + learnrbook = derive2 { name="learnrbook"; version="2.0.1"; sha256="0yrh3d75zl4rqc22prw3rnwhzxh1nb9mk1rwdh2rr4sw71nmbvyv"; depends=[]; }; leastcostpath = derive2 { name="leastcostpath"; version="2.0.12"; sha256="0nkahghj9vvhcsq8h39y8kvcpgglwhnb0wcdhvkqzwnsparl58kd"; depends=[doParallel foreach gstat igraph Matrix sf terra]; }; - ledger = derive2 { name="ledger"; version="2.0.9"; sha256="0ynr1g7vfkabl78zjnshyxixk45g28bi9h1p4zjfl83009yhqjwx"; depends=[dplyr rlang stringr tibble tidyr tidyselect]; }; + ledger = derive2 { name="ledger"; version="2.0.11"; sha256="0l26s7mnfrn9yi03xdx2i0965p17vif6cks1k9fi6h8lbfdj3id7"; depends=[dplyr rlang stringr tibble tidyr tidyselect]; }; leem = derive2 { name="leem"; version="0.1.0"; sha256="1sm9v3m95fbg3apvv3jjf47qxn8v6ipdsm1103dqk4zngmsz4xia"; depends=[tkrplot]; }; lefko3 = derive2 { name="lefko3"; version="6.2.1"; sha256="027x9k6wl59mbwfi1pd8jjhj60sbxi4gw27xb47rksbwkqbp0q4d"; depends=[BH glmmTMB lme4 MASS Matrix MuMIn pscl Rcpp RcppArmadillo VGAM]; }; legion = derive2 { name="legion"; version="0.1.2"; sha256="0463a743n6k21v6nyacmp2li9dngaaww9lh83150621s7pdycw3s"; depends=[generics greybox nloptr Rcpp RcppArmadillo smooth zoo]; }; legislatoR = derive2 { name="legislatoR"; version="1.1.0"; sha256="12ij2xqasc4j7gx79wzbdg3wvg8dn9azj0qj61s4c6ficyr0x0bv"; depends=[curl dplyr]; }; legocolors = derive2 { name="legocolors"; version="0.3.1"; sha256="0ds9c2x0x590yk7mrjm4hh7k72p51slssg7jlprd71mw6hry91ma"; depends=[]; }; lehdr = derive2 { name="lehdr"; version="1.1.3"; sha256="0jkfnda7dpkhvlam6l4r5b80yrrhnvlx61frxi56qr7mws5z2h1w"; depends=[dplyr glue httr2 magrittr readr rlang stringr]; }; + lehuynh = derive2 { name="lehuynh"; version="0.1.1"; sha256="1959f73184l8npcvcrqxnnmw5xzc3f99mj8jsaq3ldaqfqhkrrpp"; depends=[brms dplyr fs ggplot2 ggpubr magrittr purrr readxl rio stringr tibble usethis]; }; leiden = derive2 { name="leiden"; version="0.4.3.1"; sha256="1qihzjrwcb09aga27frcdrdv4dp0g295dbrk07fqykbjlb7vpv59"; depends=[igraph Matrix reticulate]; }; leidenAlg = derive2 { name="leidenAlg"; version="1.1.3"; sha256="0g4gs6rrz3wn97ag7wsfr6qa4zgb75i0k9jc1siii4pf6h689d1x"; depends=[igraph Matrix Rcpp RcppArmadillo RcppEigen sccore]; }; leidenbase = derive2 { name="leidenbase"; version="0.1.27"; sha256="09vvkn8czf6w4vib5jf3np2q9w3i8xdl2fbcikvzrb4ah9l8l5n3"; depends=[igraph]; }; @@ -12712,12 +12922,12 @@ in with self; { lemon = derive2 { name="lemon"; version="0.4.9"; sha256="1yjam478s6sz1spggybb34akpmpgq8ybyrhzy3b1v9s1j81b6k87"; depends=[ggplot2 gridExtra gtable knitr lattice plyr scales]; }; lenght = derive2 { name="lenght"; version="0.1.0"; sha256="0w7r5rizif2g6dg5ldcdnd0lj1s6v2z46w9j9g0zdlidx83a8vdn"; depends=[]; }; lenses = derive2 { name="lenses"; version="0.0.3"; sha256="08akwzlc5gk2rxbh9xp67n5ahdcld60932ascczjv0accrkxizhk"; depends=[magrittr rlang tidyselect]; }; - leontief = derive2 { name="leontief"; version="0.2"; sha256="1gy23047c6gci9m83yrb662d5685x1kky6m94w68swms59gdc6yp"; depends=[Rcpp RcppArmadillo]; }; + leontief = derive2 { name="leontief"; version="0.3"; sha256="0ms50fqnbfvwj5a2a0s647nyzpcbxyzf61f3rcp9h1qf1wil860b"; depends=[]; }; leprechaun = derive2 { name="leprechaun"; version="1.0.0"; sha256="1y30s519502bqabzsf1njf3zzqlbmr4sbmsm57ci1r6dv4miijkh"; depends=[cli fs jsonlite roxygen2 usethis]; }; leptokurticMixture = derive2 { name="leptokurticMixture"; version="1.1"; sha256="0k107im942mi6kkd8sx7qj6h8hfa3gv3bnjz5jl34a98kj91hk49"; depends=[]; }; lero_lero = derive2 { name="lero.lero"; version="0.2"; sha256="03ll7jzcay0swwpmxyf0y9k2h8mxx4p5v3ggm9dgdz4j99934l70"; depends=[]; }; less = derive2 { name="less"; version="0.1.0"; sha256="1pgixa04rjngfg0yhxyg4qhd6g0pj8zyb3q8mfa3fjxzpywdy70a"; depends=[caret e1071 FNN MLmetrics pracma R6 randomForest RANN rpart wordspace]; }; - lessR = derive2 { name="lessR"; version="4.3.0"; sha256="16nnnswv7d0dz4bw8fvys1i7zd6c56l419fyk9bv0k37vhdnrini"; depends=[colorspace ellipse knitr lattice latticeExtra leaps openxlsx robustbase shiny]; }; + lessR = derive2 { name="lessR"; version="4.3.3"; sha256="0yg9galvwnjzgkfj8hrmrscsdd7qh0g9fqxdqh444wkfarw55n0k"; depends=[colorspace ellipse knitr lattice latticeExtra leaps openxlsx robustbase shiny]; }; lessSEM = derive2 { name="lessSEM"; version="1.5.5"; sha256="10wh8rx3rbr3gprmd5x633k68hxc1afqm6m5l3cinib4acdp0r22"; depends=[ggplot2 lavaan mvtnorm numDeriv Rcpp RcppArmadillo RcppParallel rlang stringr tidyr]; }; lest = derive2 { name="lest"; version="1.1.0"; sha256="1d69kvdl31crv4ik8bwylq3s3f4skzrjc4x49c79w443g64n2jp9"; depends=[]; }; lestat = derive2 { name="lestat"; version="1.9"; sha256="1skxymdf3ncmdbskh7711xxgwsmwxfxnl52gcgw06jscx6s6wrsd"; depends=[MASS]; }; @@ -12733,6 +12943,7 @@ in with self; { lfe = derive2 { name="lfe"; version="3.0-0"; sha256="16838gqglnc2l5hnyv46fpikh6h0l5yy59rmbisxpl1j571hab9l"; depends=[Formula Matrix sandwich xtable]; }; lfl = derive2 { name="lfl"; version="2.2.0"; sha256="02kd7fz12v6xl1f3lv7kkxccln4fm8dmvbn7m9prbiawrbmy16dx"; depends=[e1071 foreach forecast plyr Rcpp tseries zoo]; }; lfmm = derive2 { name="lfmm"; version="1.1"; sha256="1v2sb2qghwcln3b5rpzhakg562izlzyxzvz49nz74y0rh2gx7g9i"; depends=[foreach ggplot2 knitr MASS purrr Rcpp RcppEigen readr rmarkdown RSpectra]; }; + lfproQC = derive2 { name="lfproQC"; version="0.1.0"; sha256="0cs6x5nqwm1n11i287f26x4lclpmd5vwj9wwnzlr7cr95riwrqxk"; depends=[dplyr ggplot2 Hmisc laeken limma magrittr MASS matrixStats pcaMethods plotly reshape reshape2 tidyr tidyselect VIM vsn]; }; lfstat = derive2 { name="lfstat"; version="0.9.12"; sha256="0hl5b78llydcphbrg04fi5b4v7p6xxwlcwpl70m2537gra52wvdr"; depends=[dygraphs lattice latticeExtra lmom lmomRFA plyr scales xts zoo]; }; lg = derive2 { name="lg"; version="0.4.1"; sha256="1srlklq6hkb4yd3lbbazswj866i3wzk2524hhj1v45yr7d5qhxv0"; depends=[ggplot2 ks localgauss logspline mvtnorm np tseries]; }; lgarch = derive2 { name="lgarch"; version="0.6-2"; sha256="05xksc4d6dbf5ls4lf2gpk9xyi99fikr7dva88b84rfgads1yhrh"; depends=[zoo]; }; @@ -12748,13 +12959,14 @@ in with self; { libbib = derive2 { name="libbib"; version="1.6.4"; sha256="1jcdsvg5xgc7yzdc00k2brsiviyzflsdgiyk77icw08bwlbxh9mk"; depends=[curl data_table pbapply stringr xml2]; }; libcoin = derive2 { name="libcoin"; version="1.0-10"; sha256="1bvysrq2s3951vr5ab1jzbz4hyx5j04yzh04vxdpd287bm4y08rh"; depends=[mvtnorm]; }; libgeos = derive2 { name="libgeos"; version="3.11.1-2"; sha256="0d4gfcll0z4f57sv8vax2bbc4fvs4da4510qwisd7wf5ghjhsbb0"; depends=[]; }; - libr = derive2 { name="libr"; version="1.3.1"; sha256="16cs8kpn6l8h1333cglsh50qydjk821bqyyyipn39s8v45yxzigf"; depends=[common crayon data_table dplyr haven openxlsx Rcpp readr readxl tibble]; }; + libr = derive2 { name="libr"; version="1.3.3"; sha256="0xx4wpkwnraw3w0mf6k3p1l3y27dd1h94wvi3nbalyb8vm6igjiz"; depends=[common crayon data_table dplyr haven openxlsx Rcpp readr readxl tibble]; }; librarian = derive2 { name="librarian"; version="1.8.1"; sha256="0bbgx9pdwcv64p6zdrw3m0893ar4bw6z90vhbgplp53l65cch548"; depends=[BiocManager remotes]; }; librarysnapshot = derive2 { name="librarysnapshot"; version="0.1.2"; sha256="0v4x564zpm58kxs5n84bi6mcjhbzjg6a2lc30vsc8kbm3qy0nq38"; depends=[]; }; - libstable4u = derive2 { name="libstable4u"; version="1.0.3"; sha256="1qhq255s20h30wrbfwdda35gjiijs9vri49jq2cnhl2kwmcgg71b"; depends=[Rcpp RcppGSL]; }; + libstable4u = derive2 { name="libstable4u"; version="1.0.4"; sha256="1szyqm1vfx2c0mjzazg58jmw10a816279wa0blmwzvjs3ik7qfl3"; depends=[Rcpp RcppGSL]; }; lidR = derive2 { name="lidR"; version="4.1.1"; sha256="0n0w5qv5mjfnxk7wixwivm68y8pb67sqyfkqinq85rnybhgzshmd"; depends=[BH classInt data_table glue lazyeval Rcpp RcppArmadillo rgl rlas sf stars terra]; }; lidaRtRee = derive2 { name="lidaRtRee"; version="4.0.5"; sha256="1a3c0lmmg3my5rwaq30gcg3jhrd1dndlsa49dgav3gv9l214ri3w"; depends=[car gvlma imager leaps lidR reldist sf terra]; }; - lifeR = derive2 { name="lifeR"; version="1.0.1"; sha256="1bgs8m2a4k4p31lw50kgv9mg0hg7afdaxg9sy6ss1n5s68920h5w"; depends=[curl dplyr ggplot2 jsonlite knitr maptiles readr rmarkdown stringr terra tidyterra]; }; + lievens = derive2 { name="lievens"; version="0.0.1"; sha256="0px5fi06cl8kvi8wgs2nh616acznx108nfphhlfkp2x00hapln6z"; depends=[tibble]; }; + lifeR = derive2 { name="lifeR"; version="1.0.2"; sha256="0cr70wcj84k3h6vgxw9s98md7q63q4qvxdp5065j4vwf49igi492"; depends=[curl dplyr ggplot2 jsonlite knitr maptiles readr rmarkdown stringr terra tidyterra]; }; lifecontingencies = derive2 { name="lifecontingencies"; version="1.3.11"; sha256="1wz0v7abl3g3kgbp613rx5rw2ryxahk1h8bk8d3p5v7wyfwqignh"; depends=[markovchain Rcpp]; }; lifecourse = derive2 { name="lifecourse"; version="2.0"; sha256="1m8ihqvzhzpq2m2pdvh37bpq9pdbj23r3y0jkl3q8farh3qj473d"; depends=[TraMineR]; }; lifecycle = derive2 { name="lifecycle"; version="1.0.4"; sha256="1k4ibf2x90xgmzaq47vf9wrsh6a2fp2lg1l8bq89632bx33x795d"; depends=[cli glue rlang]; }; @@ -12762,8 +12974,7 @@ in with self; { liftLRD = derive2 { name="liftLRD"; version="1.0-9"; sha256="11xrh4pjvlqb0297a2wzngpa1m3b09axvcfd16hg393rifrisgh4"; depends=[adlift nlt]; }; liftr = derive2 { name="liftr"; version="0.9.2"; sha256="0azi831c4f0vcq27a3q86vj90zvwrzcy4plhj9hqkk4qz8xw113x"; depends=[knitr rmarkdown rstudioapi stringr yaml]; }; lifx = derive2 { name="lifx"; version="0.2.0"; sha256="0p9ljd3s3lc1rkhzpp801izy9y52f0yc1dsrsxwx5gi89cnib596"; depends=[assertthat crayon curl httr jsonlite]; }; - liger = derive2 { name="liger"; version="2.0.1"; sha256="121ipwznm40x2xhhlxd20385va4nmvgni5dg24lbhyfn5sb3dsy1"; depends=[matrixStats Rcpp RcppArmadillo]; }; - lightgbm = derive2 { name="lightgbm"; version="4.3.0"; sha256="1kk2jj7d1adqi9x1q3jij7fy8h9vc6bvzcz7jhi4bd9cybw8gpnh"; depends=[data_table jsonlite Matrix R6]; }; + lightgbm = derive2 { name="lightgbm"; version="4.4.0"; sha256="082xmr33ki16i52a3z6lv9niv46pi4dbp0j3qn421sxml4115sf1"; depends=[data_table jsonlite Matrix R6]; }; lightparser = derive2 { name="lightparser"; version="0.1.0"; sha256="176lsx2qmy3iqwg1ashf81hj8biwvplcs4y5fbw0mb34fw93n876"; depends=[knitr rlang tibble yaml]; }; lightr = derive2 { name="lightr"; version="1.7.1"; sha256="0wbrwkkz11cp4n0ikxc541y9hpav5kvr4fv9s9llrd1ammpkzfw3"; depends=[future_apply progressr xml2]; }; lightsout = derive2 { name="lightsout"; version="0.3.2"; sha256="0wkpg4yvn2br0r1vb23vl4ayhg4m8zph57p67wf3a4c0xqga3kvr"; depends=[magrittr shiny shinyjs]; }; @@ -12776,6 +12987,7 @@ in with self; { lillies = derive2 { name="lillies"; version="0.2.12"; sha256="1ys1fzi9azj0nxvf8byy30zbcf7p90p18842kwy98m6my8iwqqj2"; depends=[dplyr knitr pracma progress rlang survival tidyr]; }; limSolve = derive2 { name="limSolve"; version="1.5.7.1"; sha256="14jvx0sjjdsm6fxvdck648h12sl4cmy8sgw8jx1744pmpcbm5555"; depends=[lpSolve MASS quadprog]; }; lime = derive2 { name="lime"; version="0.5.3"; sha256="157ph4a1h3025nx5v8lw63bbrzk4skw2rnnw1g7h4d3qggcmlhf9"; depends=[assertthat ggplot2 glmnet gower Matrix Rcpp RcppEigen stringi]; }; + limexhub = derive2 { name="limexhub"; version="0.1.5"; sha256="1f5s1m544fsm0dv5kd5g198f9f2lkz89f58pf28d4hvx89cmf103"; depends=[data_table httr jsonlite]; }; liminal = derive2 { name="liminal"; version="0.1.2"; sha256="1ka16fm0gzhpydlk5pjf1vjcb7ygx1d3iv4z8cs6ywzrq4bb5r61"; depends=[dplyr jsonlite matrixStats miniUI rlang shiny tourr vegawidget]; }; limonaid = derive2 { name="limonaid"; version="0.1.5"; sha256="04w9g0gv1cihljvmh1y40ygckhhv4jrg970913npvk5nc3id3bqd"; depends=[httr jsonlite R6]; }; limorhyde = derive2 { name="limorhyde"; version="1.0.1"; sha256="0ksz8chs5v7qss5yf24zcpszi6v0ylbn98zaxy7mz62qfx5i441g"; depends=[pbs]; }; @@ -12788,18 +13000,19 @@ in with self; { lindia = derive2 { name="lindia"; version="0.10"; sha256="0i4mi19pcbpiqbwzj5ga9jhzi0z1qsf779kndyz9sdd9wgxdz8zg"; depends=[ggplot2 gridExtra MASS]; }; linearModel = derive2 { name="linearModel"; version="1.0.2"; sha256="032liplyjw7n0ylvpqv038pf8sbfbcz58zka5rr76cvh2xzf87vg"; depends=[]; }; lineartestr = derive2 { name="lineartestr"; version="1.0.0"; sha256="0bzsywk97j2mmsi7pj9267za1q2601crynh9kszwj6xjbg08nvsm"; depends=[dplyr forecast ggplot2 Matrix readr sandwich tidyr viridis]; }; - linelist = derive2 { name="linelist"; version="1.1.0"; sha256="1f9alw5vvrb6nyzy2mfhyc4vqn2q05gwgr0hw9rajm84ym0l0g2r"; depends=[checkmate dplyr lifecycle rlang tidyselect]; }; + linelist = derive2 { name="linelist"; version="1.1.3"; sha256="0bpsz61pdx3vl88g006iy5gzl1f2lwsfws6gjm1aki9rsih8fx0x"; depends=[checkmate dplyr lifecycle rlang tidyselect]; }; + linelistBayes = derive2 { name="linelistBayes"; version="1.0"; sha256="08xgqp1ldb76063k4dgyjjdzk50l4x0ddz1q3y4zzf4jfisp9720"; depends=[coda dplyr lubridate magrittr Rcpp RcppArmadillo]; }; linemap = derive2 { name="linemap"; version="0.3.0"; sha256="1fyvab2m742klsl94k2vc5qv0ykwcj0ybm3vv0mdv94nlmcm2gk7"; depends=[terra]; }; lineup = derive2 { name="lineup"; version="0.42"; sha256="1k6l3vl9g6cz3jl1fz6r1dm3lfpmis6yylra69c3s8l8l4fz0gzy"; depends=[class qtl]; }; lineup2 = derive2 { name="lineup2"; version="0.6"; sha256="0qkxwn30g0bjm9aq9a59pb3xq844qr43ribnk607zlf8lwbibsk2"; depends=[Rcpp]; }; lineupjs = derive2 { name="lineupjs"; version="4.6.0"; sha256="198a87hhn1f77ix3mrv8mi04qxlv392aw1cg852h8s6sr2ayxqgl"; depends=[htmlwidgets]; }; lingdist = derive2 { name="lingdist"; version="1.0"; sha256="17mcr487bb7brmjzbiq71snxxaxnfg33ml3dqdfldv13i8nv3shi"; depends=[Rcpp RcppThread]; }; lingglosses = derive2 { name="lingglosses"; version="0.0.7"; sha256="0qa42bjx9mszdfnzgmi7i23czrqnz8vbdaj0vq5sx8rn547dhymx"; depends=[htmltools kableExtra knitr rmarkdown]; }; - lingmatch = derive2 { name="lingmatch"; version="1.0.6"; sha256="01cp6sdns2bgfclcz21fhb69q39sr1zqxx2h582kp5s86ikkxbr3"; depends=[BH Matrix Rcpp RcppParallel]; }; + lingmatch = derive2 { name="lingmatch"; version="1.0.7"; sha256="0qciq4dcxsv33scvzcn3lmivisq7hl3llky1p9fj2xjlgc5l53yv"; depends=[BH Matrix Rcpp RcppParallel]; }; lingtypology = derive2 { name="lingtypology"; version="1.1.17"; sha256="07r9p41jhrx7hgy5h3bfhnry5b88chbim6nnvisw5v39b2mm1p9n"; depends=[jsonlite leaflet leaflet_minicharts stringdist]; }; linguisticsdown = derive2 { name="linguisticsdown"; version="1.2.0"; sha256="1y2g8h0p4q4mjrawzyprsdw8ynqcbpnjypyhdaf03pcwqglcirkl"; depends=[DT knitr magrittr miniUI rstudioapi shiny stringr]; }; link = derive2 { name="link"; version="2024.4.0"; sha256="0yz610hi3si6z9kgfzhn5wj00kbp7bfqfbg1iqs871jcwihbz5xc"; depends=[bslib downlit glue htmltools httr2 knitr rlang stringr xml2]; }; - link2GI = derive2 { name="link2GI"; version="0.5-3"; sha256="192f3cilra1lq8wg2hn41z2a7ag4m9svkc6smw0rf7np2xv9b2a6"; depends=[devtools R_utils roxygen2 sf stringr terra xfun xml2]; }; + link2GI = derive2 { name="link2GI"; version="0.6-1"; sha256="0ivzbmvwxx2v0pk7f1y84jxad5pvpl4m6czmjkga52wnk0y5dnn1"; depends=[brew devtools git2r R_utils renv roxygen2 rstudioapi sf terra xfun xml2 yaml]; }; linkcomm = derive2 { name="linkcomm"; version="1.0-14"; sha256="15xm4c7sqpid1vjra250dnvdx98qgzbzmvaycf3zqqnqcmy5bw9n"; depends=[dynamicTreeCut igraph RColorBrewer]; }; linkedInadsR = derive2 { name="linkedInadsR"; version="0.1.0"; sha256="1849n9lk3j6jryshz9vz6pxsrqarzqjfrnf91xiwws8kiv65v8p4"; depends=[jsonlite]; }; linkprediction = derive2 { name="linkprediction"; version="1.0-0"; sha256="0p2abdq6ad689236w2d0khlycpjgy6j7xrlb96ngl6csgxwm07bl"; depends=[igraph intergraph]; }; @@ -12809,7 +13022,7 @@ in with self; { linpk = derive2 { name="linpk"; version="1.1.2"; sha256="0i87sfh01dl3xqs5vy3ha2prg952zpiq8fbl2amaiamg1qwl2y34"; depends=[mvtnorm]; }; linprog = derive2 { name="linprog"; version="0.9-4"; sha256="1d34m2nyk7m6j2dci69bhy5mlw479xax1517j7f14pq7vhpsm9l1"; depends=[lpSolve]; }; lintools = derive2 { name="lintools"; version="0.1.7"; sha256="03sfx1w3kl7xk79bpw6hddk7xylh2w2fp9zsgbd50150xp49p1ah"; depends=[]; }; - lintr = derive2 { name="lintr"; version="3.1.1"; sha256="07c7h30nh1529wba8xkyg2sapj6r7jjckrxyzhrg2ssfwzs4dwdw"; depends=[backports codetools cyclocomp digest glue knitr rex xml2 xmlparsedata]; }; + lintr = derive2 { name="lintr"; version="3.1.2"; sha256="0xska080wnifvibywmwalmp4a0xdnsgpn0k3m5ahjbqckfcpklrm"; depends=[backports codetools cyclocomp digest glue knitr rex xml2 xmlparsedata]; }; lipidmapsR = derive2 { name="lipidmapsR"; version="1.0.4"; sha256="19yrqd28z5dvpvi0igarmz9fpv08yx78221nzrwc8yxp6m1agkgc"; depends=[httr RJSONIO]; }; lipidomeR = derive2 { name="lipidomeR"; version="0.1.2"; sha256="1a9zi821mn7w18lg7psc9bagi3c5snvwqgda2f10rw5jff60fkfd"; depends=[BiocManager dplyr ggplot2 knitr limma reshape2 shadowtext stringr tableone tidyr]; }; liqueueR = derive2 { name="liqueueR"; version="0.0.1"; sha256="0rpjib0dz39la63gy9bw9gmdfq2fcx40y4y4wcb6ky41qcjdp1nd"; depends=[itertools]; }; @@ -12819,7 +13032,7 @@ in with self; { list = derive2 { name="list"; version="9.2.6"; sha256="1r1j4jk54mcvsgxm2gxpjh66h13frdiq9cszc0wxg1zfrpcisava"; depends=[arm coda corpcor gamlss_dist magic MASS mvtnorm quadprog sandwich VGAM]; }; listArray = derive2 { name="listArray"; version="0.1.1"; sha256="0j8hdsda7p6m1q06mi32yh3wqsdjr77kb8js42nm63dgpfy7mvv5"; depends=[]; }; listWithDefaults = derive2 { name="listWithDefaults"; version="1.2.0"; sha256="1rv9jq9zlr5dm08mimba6ni2p5vkfybrgrqk1alm7y6mqpx56byp"; depends=[assertthat]; }; - listarrays = derive2 { name="listarrays"; version="0.3.1"; sha256="0nfpqywq9pl9yj566y0jw0h89g0ppsc614538ns1jc3l5r2myils"; depends=[]; }; + listarrays = derive2 { name="listarrays"; version="0.4.0"; sha256="1zrvab4d28rk0sp3prwmxn290423j83dvhbpc23d2c5601wlga9j"; depends=[]; }; listcomp = derive2 { name="listcomp"; version="0.4.1"; sha256="0h3wmlm3y3vr21x4ik785ring57z5cjhlwvsljh06m5m3fkv8nxr"; depends=[rlang]; }; listcompr = derive2 { name="listcompr"; version="0.4.0"; sha256="1pmk56wz6yl1qixfk9ci1p96z7qwz65xyb6k5k46l5nbwal6ik4a"; depends=[]; }; listdown = derive2 { name="listdown"; version="0.5.7"; sha256="0dw41ylja9ibznsqfr0621sqsmwb4kzlrwaycjl2hc4wmbabbliv"; depends=[checkmate fs rmarkdown tibble yaml]; }; @@ -12851,7 +13064,8 @@ in with self; { lmap = derive2 { name="lmap"; version="0.1.2"; sha256="08bdznssicrl493zv5qa1vyjh38zhb83rwnipq83zi4qfp2s8n5p"; depends=[dplyr fmdu ggforce ggplot2 ggrepel magrittr MASS nnet Rfast]; }; lmboot = derive2 { name="lmboot"; version="0.0.1"; sha256="1v7a3vlv0187mpg3y3pj7f3pbk1v5n6amw732chy10vdw5nmfkwd"; depends=[evd]; }; lmds = derive2 { name="lmds"; version="0.1.0"; sha256="130azb0nc2wwxv0qi8v5s4rd02p9lc92zwn634pv7b8awbw81i65"; depends=[assertthat dynutils irlba Matrix]; }; - lme4 = derive2 { name="lme4"; version="1.1-35.1"; sha256="0nzv1a22pfsf2ryw91h16ic4cb8y8g6wh0gx3msr7gv8dwwi3974"; depends=[boot lattice MASS Matrix minqa nlme nloptr Rcpp RcppEigen]; }; + lme4 = derive2 { name="lme4"; version="1.1-35.3"; sha256="0ij37wly0d28x143xdkjry5jsj4chlbli2fl9zbp8fkcgh95r1xl"; depends=[boot lattice MASS Matrix minqa nlme nloptr Rcpp RcppEigen]; }; + lme4breeding = derive2 { name="lme4breeding"; version="1.0.1"; sha256="12156nll73lwmf0si6pm46gvkc3pdgqwg6yc9bqdvgdggf7pnjqc"; depends=[crayon lme4 Matrix]; }; lmeInfo = derive2 { name="lmeInfo"; version="0.3.2"; sha256="11sqfb9bj7npngli4h0mzjd2pqjjkza2zmq4b9g2fhmm9r2b0zvd"; depends=[nlme]; }; lmeSplines = derive2 { name="lmeSplines"; version="1.1-12"; sha256="140l95c6yys2rdpyh7clqx4x4qfd4w36hpz6jkb2ygbh90ikzi2r"; depends=[nlme]; }; lmerPerm = derive2 { name="lmerPerm"; version="0.1.9"; sha256="1z69qr8nz89f4qbkyjs4n171yz9g6znxkgykrn0k3qbd3d7r9jds"; depends=[lmerTest]; }; @@ -12868,19 +13082,19 @@ in with self; { lmom = derive2 { name="lmom"; version="3.0"; sha256="1482kbb4cm65m2d1xlxml93yjd3d43iiap6nvzg5vd33i9iyh2jb"; depends=[]; }; lmomPi = derive2 { name="lmomPi"; version="0.6.6"; sha256="0a9ddfaa3micj3q7wcpkcsxhbd6dv3gn19rdy7ll3f76g63pknf1"; depends=[lmom stringr]; }; lmomRFA = derive2 { name="lmomRFA"; version="3.6"; sha256="1av113gxif93v26g2x4c4l4fbax42w5bv3560p5sgdxbnb7sdmqp"; depends=[lmom]; }; - lmomco = derive2 { name="lmomco"; version="2.4.14"; sha256="09adqsf70jz1rhwlzq8f9cwr1gf36l80l2vfhrsw3hh18cszs44k"; depends=[goftest Lmoments MASS]; }; + lmomco = derive2 { name="lmomco"; version="2.5.1"; sha256="0jkqm5cavixb1wfcw00k0pa6y8j252h6mhq5ldcz1qakp07rhzb4"; depends=[goftest Lmoments MASS]; }; lmreg = derive2 { name="lmreg"; version="1.2"; sha256="02a4nqqcfkjlq21mpk8abd4lj4ib2nps3ndf7zgmzygkd1z0df18"; depends=[MASS]; }; lmridge = derive2 { name="lmridge"; version="1.2.2"; sha256="1lngzhxgjdg4j2bxi680zdsj0ambrpn23v2ib0mbilscbv3p8701"; depends=[]; }; lmtest = derive2 { name="lmtest"; version="0.9-40"; sha256="15yr2kx08wy085bnziqmj1p6hf9mg3qp2a8465jk2df6di6hsh34"; depends=[zoo]; }; lmtestrob = derive2 { name="lmtestrob"; version="0.1"; sha256="1637x7wp2kb97xbllyd0kwxszcjlajfr0c9qa956cn6fdk9yi61d"; depends=[MASS]; }; - lmtp = derive2 { name="lmtp"; version="1.3.2"; sha256="124rahrbvrkr1mvazjwz7b42333az9sh26nml9snrcicl0ysjyzv"; depends=[checkmate cli data_table future generics nnls origami progressr R6 SuperLearner]; }; + lmtp = derive2 { name="lmtp"; version="1.3.3"; sha256="12vq5rail8xdw84ms6nv4ncmdygk485vffyzqc9kcc7wxlbr127i"; depends=[checkmate cli data_table future generics nnls origami progressr R6 SuperLearner]; }; lmviz = derive2 { name="lmviz"; version="0.2.0"; sha256="0sl2k02m5bxkb4jg8y666ln0xxhr4dhsfz9hlp55p9smlhycl5s2"; depends=[car lmtest MASS mgcv rgl scatterplot3d shiny shinyjs]; }; lmw = derive2 { name="lmw"; version="0.0.2"; sha256="1ij9jdf8zr0pq4q5qxgvnvjf4ciqr86p39ajq5v6zlinbcs7qaiq"; depends=[backports chk sandwich]; }; lncDIFF = derive2 { name="lncDIFF"; version="1.0.0"; sha256="012dwrcp0pny59hvzj7mnyyc3nijcjgxc0dyx7ab2fknp9bhs5w8"; depends=[]; }; lnmCluster = derive2 { name="lnmCluster"; version="0.3.1"; sha256="1y5zf2m4kgysm15xnbd1zc21svif2mxpm1zla4nhg68hljl41j8s"; depends=[foreach gtools MASS mclust pgmm Rcpp stringr]; }; loa = derive2 { name="loa"; version="0.2.48.3"; sha256="1fa1yxpsydx2kjbnj00vn9zv4dw9awng4lxrcllcgzkir9bikgq0"; depends=[lattice MASS mgcv OpenStreetMap plyr png RColorBrewer RgoogleMaps sp]; }; - loadeR = derive2 { name="loadeR"; version="1.1.8"; sha256="0bh5c16sdgirw0pmpmg6mvglv9zlaz9l2mfmk85rxvg00zw0qrq4"; depends=[caret colourpicker config data_table DT echarts4r golem htmltools htmlwidgets readxl rlang shiny shinyAce shinycustomloader shinydashboard shinydashboardPlus shinyjs writexl]; }; - loadings = derive2 { name="loadings"; version="0.4.1"; sha256="1ig9wz27mc5jdkah4z9ngdpanl5xcay2d27vdbfhannsw5i0lcdy"; depends=[geigen]; }; + loadeR = derive2 { name="loadeR"; version="1.2.0"; sha256="0hxvmhl0xyyxjiinbh55clwdzihpxyw61k1gm6wcvj8hs21y8sl0"; depends=[caret colourpicker config data_table DT echarts4r golem htmltools htmlwidgets readxl rlang shiny shinyAce shinycustomloader shinydashboard shinydashboardPlus shinyjs writexl]; }; + loadings = derive2 { name="loadings"; version="0.5.1"; sha256="0ar8xryk8xd2p5zscwshk83pg3ivwbp60kmjamjzwk56fjn8zb9k"; depends=[geigen]; }; loadshaper = derive2 { name="loadshaper"; version="1.1.1"; sha256="10fypkybqi6kpvxcrwsvzczqc11mihyj5f1d3jhd22s8llm8k0gc"; depends=[]; }; lobstr = derive2 { name="lobstr"; version="1.1.2"; sha256="060p7b7i2qx09d7nf0kdl85r9j886fivrkrsl2bn10cggvnk7icv"; depends=[cpp11 crayon prettyunits rlang]; }; locStra = derive2 { name="locStra"; version="1.9"; sha256="0vblsxdlngpa0mzyay9w23nx85riq0dwjc04z20vyha0vdsnkfk6"; depends=[bigsnpr Matrix Rcpp RcppEigen Rdpack RSpectra]; }; @@ -12901,12 +13115,11 @@ in with self; { locits = derive2 { name="locits"; version="1.7.7"; sha256="13y313z0wmhrqfzgr3dbcmkdg6507p0wdvyxrnz1vm0rjwqv4911"; depends=[igraph wavethresh]; }; locpol = derive2 { name="locpol"; version="0.8.0"; sha256="1bip9x45kdnwc14rvk3ckzfbs32yc2wiid1ypmbbin4mk7364zxk"; depends=[]; }; locpolExpectile = derive2 { name="locpolExpectile"; version="0.1.1"; sha256="1phwcnbk1vmdk3qmfx2nd6crplly2lb8gb57yl67ky3c4sryh358"; depends=[expectreg lestat locpol matrixcalc quantreg]; }; - locuszoomr = derive2 { name="locuszoomr"; version="0.2.1"; sha256="0ydz82vrqv5kwchsafnq15kfdz8vd7jzaxa3b8v7s7r2qfh23603"; depends=[AnnotationFilter BiocGenerics cowplot dplyr ensembldb GenomeInfoDb GenomicRanges gggrid ggplot2 ggrepel IRanges LDlinkR memoise plotly rlang rtracklayer zoo]; }; + locuszoomr = derive2 { name="locuszoomr"; version="0.3.0"; sha256="1bah3sr0srnvafm69h62hfw5gajsnrasqwzzsk391ga73mqbi8mz"; depends=[AnnotationFilter BiocGenerics cowplot dplyr ensembldb GenomeInfoDb GenomicRanges gggrid ggplot2 ggrepel IRanges LDlinkR memoise plotly rlang rtracklayer zoo]; }; lodGWAS = derive2 { name="lodGWAS"; version="1.0-7"; sha256="0g5b44d3wb5hnx5l2n76myb1pc9ml3a052n1a4gvgqapa5as35s2"; depends=[rms survival]; }; loder = derive2 { name="loder"; version="0.2.1"; sha256="19l3rim2k3kd15i86gdbwlma63w68n1cjqbahqbrgck2irx9f6vy"; depends=[]; }; lodi = derive2 { name="lodi"; version="0.9.2"; sha256="16xqcza87gsqi6kzx0bdv3w9zyvvppjd20rq08lc8vb75nlkx1yb"; depends=[rlang]; }; lodr = derive2 { name="lodr"; version="1.0"; sha256="0bmdw489dv1069krnx9yi0bcgx1vx4ymc6s4pix4shha5c5fbiz4"; depends=[Rcpp RcppArmadillo Rdpack]; }; - loe = derive2 { name="loe"; version="1.1"; sha256="1n16pgfxg9vcn729xxjbbvavg2ywbdcch9v2ph8nv3z7psc0q46c"; depends=[MASS]; }; loedata = derive2 { name="loedata"; version="1.0.1"; sha256="01w0f83n1jzchw12w1wg18lq6idlp9ywr52nipg2l7pn9aa30gvv"; depends=[]; }; loewesadditivity = derive2 { name="loewesadditivity"; version="0.1.0"; sha256="0j9vvh2ys09hy2k3mbrlf0p493ymrxvfsdcjw0p6rlls54z9lqqc"; depends=[dplyr ggplot2 gridExtra magrittr metR rlang rootSolve tidyr viridis]; }; log = derive2 { name="log"; version="1.1.1"; sha256="1vzssrg2qqxd27b9d36v3mmkhgkx8n724ql9yhl5p8dy28zgsdxd"; depends=[cli crayon R6]; }; @@ -12921,10 +13134,12 @@ in with self; { logger = derive2 { name="logger"; version="0.3.0"; sha256="0ivhrmq408pb7gx7yhmrn6mjkx15dvkb4bpk4z5y642l3j2vv9vd"; depends=[]; }; logging = derive2 { name="logging"; version="0.10-108"; sha256="13gd40ygx586vs6xcp6clg69a92aj8zxlk1rn3xzkx8klfjimjc5"; depends=[]; }; loggit = derive2 { name="loggit"; version="2.1.1"; sha256="1fkr2fnfazxhm3pq0gysxhz6aqsdx38d017y0xbmlsg9hfgfx6q1"; depends=[]; }; + loggit2 = derive2 { name="loggit2"; version="2.3.0"; sha256="06gvfh3jhgfiyxi950648ha123np77xqd2n2rh41pf1ipnhaxpca"; depends=[]; }; logiBin = derive2 { name="logiBin"; version="0.3"; sha256="06y5bqm3j6xdr1cd607v2sqkghnd2bv6bvxc6cz8dvp8jabqa0zm"; depends=[data_table doParallel foreach iterators partykit]; }; logib = derive2 { name="logib"; version="0.1.2"; sha256="09c528wrgyk0cg1flx2fsl53q4v9442rr44g9kh5jznqs788608b"; depends=[lubridate readxl]; }; logicDT = derive2 { name="logicDT"; version="1.0.4"; sha256="0i60wqhhmscwhbcyril4n2g1hxja5w225s4vvnk778kd7s1ig6g2"; depends=[glmnet]; }; logihist = derive2 { name="logihist"; version="1.0"; sha256="1q3322rh3g31c5i80aw54pln0m1jgxmbx30cn31nlh3ijkvnpq9a"; depends=[ggplot2]; }; + login = derive2 { name="login"; version="0.9.3"; sha256="0sar30sy0g9pa3qsw68a3mfqwq1c2c5kqs8am8dljvf419pdbyrp"; depends=[cookies DBI digest emayili htmltools shiny shinybusy shinyjs stringr]; }; logistf = derive2 { name="logistf"; version="1.26.0"; sha256="02qrh07c13khlpz3z3f6qq827h37j91i88n7jn3c8ky6r1lfa5pr"; depends=[formula_tools Matrix mgcv mice]; }; logistic4p = derive2 { name="logistic4p"; version="1.6"; sha256="1gyg6wmv15l9kn30icrbh3zny0h419la6722nynv80ls0r2b495g"; depends=[MASS]; }; logisticPCA = derive2 { name="logisticPCA"; version="0.2"; sha256="07ikyn127ld0fjdw7x911wrswqwqpw4lbcz0iffvh6jfjkgyk341"; depends=[ggplot2]; }; @@ -12935,16 +13150,15 @@ in with self; { loglognorm = derive2 { name="loglognorm"; version="1.0.2"; sha256="0ha1b7hl86486v38ap9rm71wwvg95szqx5rb5q097vm6dl091qcr"; depends=[]; }; logmult = derive2 { name="logmult"; version="0.7.4"; sha256="1k9izgna3bfi8gvnpks85gj3zv3lp35991ml58q7pcqqr78giii2"; depends=[gnm qvcalc]; }; lognorm = derive2 { name="lognorm"; version="0.1.10"; sha256="021g3g7hyxcrj2lzqfjxj2ypcn8c6qminr0l6sdydynvjdjjv0pc"; depends=[Matrix]; }; - logr = derive2 { name="logr"; version="1.3.6"; sha256="1ndipzwlmql6qrkb9x0h1lw22rgr71vf0q2xr67a1gdqjn758vqg"; depends=[common withr]; }; - logrx = derive2 { name="logrx"; version="0.3.0"; sha256="1qqy4hm0l6fijkzlxrzj1i65bdi3lf1p3mwd7jwm66yi9ynwkkbz"; depends=[digest dplyr lifecycle magrittr miniUI purrr rlang rstudioapi sessioninfo shiny stringi stringr tibble tidyr waiter]; }; - logspline = derive2 { name="logspline"; version="2.1.21"; sha256="0xqbk3h28gkx3haj7hdg314616x673cmg9ia148g0q9j3zqkqflf"; depends=[]; }; - lokern = derive2 { name="lokern"; version="1.1-10.1"; sha256="0l49ib9qnifpxacifxq5m9kmp3ralz9bdwv37zzazjbkm15zng4d"; depends=[sfsmisc]; }; + logr = derive2 { name="logr"; version="1.3.8"; sha256="0d1r5ka83nd9s3b62m0wd7vdhfff7x229w9w8xll180qdswq04ay"; depends=[common withr]; }; + logrx = derive2 { name="logrx"; version="0.3.1"; sha256="1dnz6g3rz15gl747gn9vbr5y67zlyqffqwmp5rqvwg75ga5mhkx3"; depends=[digest dplyr lifecycle magrittr miniUI purrr rlang rstudioapi sessioninfo shiny stringi stringr tibble tidyr waiter]; }; + logspline = derive2 { name="logspline"; version="2.1.22"; sha256="00pdcfj1hmafxzs7gqw3n072p6pxp9hvsdm062n0xkiby6igffkp"; depends=[]; }; + lokern = derive2 { name="lokern"; version="1.1-11"; sha256="1psv3c59lxn7nrb04v7kydlk4q1cg3v8hb1s1v2al19f0p2jhyhz"; depends=[sfsmisc]; }; lolR = derive2 { name="lolR"; version="2.1"; sha256="0lrmn9lzyyfr1y0i7qp6xfpdxyisbkajwg0jkrqkiw687psnh2rc"; depends=[abind ggplot2 irlba MASS pls robust robustbase]; }; lolliplot = derive2 { name="lolliplot"; version="0.2.2"; sha256="1rr0j0y298dmmllck11jq36glxczcsz6z7kw9290k77z75fi3vzi"; depends=[GenomicRanges grImport IRanges scales]; }; lolog = derive2 { name="lolog"; version="1.3.1"; sha256="0hc95ff1radpc8q0xnrvhsgbhf902fhhhkjmj51sxds4mn5wdaj3"; depends=[BH ggplot2 intergraph Matrix network Rcpp reshape2]; }; - lomb = derive2 { name="lomb"; version="2.2.0"; sha256="0hb9ilybd9b4i0b5778b4lin899gnix2xwxlcqiy05lhb8qxzzij"; depends=[ggplot2 gridExtra plotly pracma]; }; + lomb = derive2 { name="lomb"; version="2.5.0"; sha256="1jlmdbxlxk2a1sbkzn3x18z82i0mwhjhy72j1l02qcnyxp3clbh4"; depends=[ggplot2 gridExtra knitr plotly pracma]; }; long2lstmarray = derive2 { name="long2lstmarray"; version="0.2.0"; sha256="1d0w5qqqq3jak72ci7p12rcs4hjwmvwlaf47pibc6y9lax609kxw"; depends=[abind dplyr]; }; - longCatEDA = derive2 { name="longCatEDA"; version="0.31"; sha256="0dji41lsknfwmgb2fczzm37dm97wvi45rh878w7pwlzwdh9vq8va"; depends=[]; }; longROC = derive2 { name="longROC"; version="1.0"; sha256="1fs11vqi4hy99d7shzzdvd6ic5gay6rh2027w6j0qpd04n8q88m8"; depends=[survival]; }; longRPart2 = derive2 { name="longRPart2"; version="0.2.3"; sha256="1vqcsxi6c4hqrpk3ns7yhghfryin1psxl38qkz2xz8cvyn58f685"; depends=[formula_tools ggplot2 MASS nlme rpart]; }; longclust = derive2 { name="longclust"; version="1.5"; sha256="0x44arc5c3xnrby1c8f5q3lvbipjsm3gsair99ybrzs4j31sgcky"; depends=[]; }; @@ -12958,6 +13172,7 @@ in with self; { longmemo = derive2 { name="longmemo"; version="1.1-2"; sha256="01rj5x9cgscsrakbx9155mbvs35fd3j484cfz5cds9vl521fjr3r"; depends=[]; }; longmixr = derive2 { name="longmixr"; version="1.0.0"; sha256="03hh1zrpxqnal4j7rmlllzdhhmrvbdnvdr7rd955hlnkr9946p6c"; depends=[checkmate ConsensusClusterPlus flexmix StatMatch]; }; longpower = derive2 { name="longpower"; version="1.0.25"; sha256="023s4ckc6695l51025qji2ggkad8cj0gz5h4zmk7i5d3pwk7g14y"; depends=[lme4 nlme]; }; + longreadvqs = derive2 { name="longreadvqs"; version="0.1.2"; sha256="07pdnipq4nl7v8sgbfrcz7slz36gnfj3zj6i6pcvq6zh4fy1bw3g"; depends=[ape Biostrings cowplot dplyr ggplot2 ggpubr magrittr plyr purrr QSutils RColorBrewer reshape2 scales seqinr stringdist stringr tibble tidyr]; }; longsurr = derive2 { name="longsurr"; version="1.0"; sha256="0hlsgf7cfqg3f9m3hmqhsfa8a5xqwb3k0z22dzkrcmxynikc416s"; depends=[dplyr fda fda_usc fdapace fs glue grf here KernSmooth lme4 magrittr mgcv mvnfast plyr purrr readr refund Rsurrogate stringr tibble tidyr]; }; longurl = derive2 { name="longurl"; version="0.3.3"; sha256="16r6gzyfy7aq8sqdzvc6wqinfp0yj46bsz4yg8n3jf0jdyx0zrc8"; depends=[httr]; }; loo = derive2 { name="loo"; version="2.7.0"; sha256="0dnbbflglm7b29vr11rfrawnys9s3rl4h00h6xh9smjyalqz6r3n"; depends=[checkmate matrixStats posterior]; }; @@ -12966,24 +13181,25 @@ in with self; { lookupTable = derive2 { name="lookupTable"; version="0.1"; sha256="0ipy0glrad2gfr75kd8p3999xnfw4pgpbg6p064qa8ljqg0n1s49"; depends=[data_table dplyr]; }; loon = derive2 { name="loon"; version="1.4.1"; sha256="096501q5lxxi9qcnziambi2zj09s8gwv6x85qjqa50bysqfjzdn2"; depends=[gridExtra]; }; loon_data = derive2 { name="loon.data"; version="0.1.3"; sha256="0sdld3yggjadykqaljf0p4cymy2c47yaxjphc6jwyragzpv4awzw"; depends=[]; }; - loon_ggplot = derive2 { name="loon.ggplot"; version="1.3.3"; sha256="15by2z3iy5p3frhb1y8rg17gbdds45b01qpcya210hia52b9vdlq"; depends=[cli ggmulti ggplot2 gridExtra loon patchwork rlang scales]; }; + loon_ggplot = derive2 { name="loon.ggplot"; version="1.3.4"; sha256="1ysdzsb2cc6ps3mbssxgnwpd0j4m5zj14f7b49py939yl4qg42cj"; depends=[cli ggmulti ggplot2 gridExtra loon patchwork rlang scales]; }; loon_shiny = derive2 { name="loon.shiny"; version="1.0.3"; sha256="1bv8a4rrrlf80r9pidjxaaql4rrm6gz13pjz1mii97q9s3xjn0id"; depends=[base64enc colourpicker gridExtra loon loon_ggplot shiny]; }; - loon_tourr = derive2 { name="loon.tourr"; version="0.1.3"; sha256="1vdxqdsr89gzvsw9gx001rw416586lqyq0rp3g55n1lh6h9cy19d"; depends=[loon loon_ggplot MASS tibble tourr]; }; + loon_tourr = derive2 { name="loon.tourr"; version="0.1.4"; sha256="1ggy3kkz86lk332pnlihc1i2bki3nks7r2bvl6bprcmds9lg689i"; depends=[loon loon_ggplot MASS tibble tourr]; }; lorad = derive2 { name="lorad"; version="0.0.1.0"; sha256="1pab66bngvcmk38id42ns6imdn014g14j6inrdkj39v6djy8xg0w"; depends=[]; }; lordif = derive2 { name="lordif"; version="0.3-3"; sha256="1yby9fvzdi1dzvzp6d6h144k1p9nfacd8l5bd66dmhnc8sp2nlx5"; depends=[mirt rms]; }; lorec = derive2 { name="lorec"; version="0.6.1"; sha256="0mgypd8awixh1lzbh5559br4k7vi3pfmwniqhgh68wc06sc6bn65"; depends=[]; }; lorem = derive2 { name="lorem"; version="1.0.0"; sha256="06pi088m1j60p3ckvz0mdfjlzqfdcjmzlalhy8pipnysv90ln5rm"; depends=[htmltools knitr]; }; - lorentz = derive2 { name="lorentz"; version="1.0-5"; sha256="1py2s4x6vnlyyf5fnwbhws00dmf5qyzmx8wza337w3nzxkr6ns6b"; depends=[emulator magic magrittr tensor]; }; + lorentz = derive2 { name="lorentz"; version="1.1-1"; sha256="1idkqxpmjqvh5jy8jmz0m40bbfyi6sk0h75hbb7sb36b1ryc5sn3"; depends=[emulator magic magrittr tensor]; }; lorenz = derive2 { name="lorenz"; version="0.1.0"; sha256="1zclxjr1ya4rc48hm8a1s6ayr4yvjydgwwsi4fwg3qqf4mspa2dl"; depends=[dineq magrittr]; }; lori = derive2 { name="lori"; version="2.2.2"; sha256="1153ilp1i849rwbbms4vfc6c1mxgpav04zfqm2sdj7s63nvknx6r"; depends=[data_table rARPACK svd]; }; lotri = derive2 { name="lotri"; version="0.4.3"; sha256="1r24ldi8asa2n1w4czrwl5kp6b7xq27prrsxf23f436zfc4hhjvl"; depends=[crayon]; }; + lotterybr = derive2 { name="lotterybr"; version="0.2.0"; sha256="1p0cv9g01l02917nndnw6f0wkms4kqpyiiddpjg251iy5j4qyl1k"; depends=[dplyr ggplot2 plotly shiny]; }; lowmemtkmeans = derive2 { name="lowmemtkmeans"; version="0.1.2"; sha256="08zhdw48rzw47yzhg4s37bkliyngxs46cyb57dvng1s3m0w0dhvi"; depends=[Rcpp RcppArmadillo]; }; lowpassFilter = derive2 { name="lowpassFilter"; version="1.0-2"; sha256="1ic4xissqm7cq951yw7cf74a520mnm34yr6mlw1byhn5w4nzbk2x"; depends=[Rcpp]; }; lpSolve = derive2 { name="lpSolve"; version="5.6.20"; sha256="1nr1vjz6ma42kxbcay4g9j30r9srkbw79f06sdnc68sid2h0dziz"; depends=[]; }; lpSolveAPI = derive2 { name="lpSolveAPI"; version="5.5.2.0-17.11"; sha256="191zjgyap3kcsvh8fygqqyr9p0agbzm160fzynnpaxf19yp6r3dh"; depends=[]; }; lpacf = derive2 { name="lpacf"; version="1.0.1"; sha256="0lg1r7pjg9f5msvjqaq93v43mssvq7jqgv2canhp3wybnmcw0p8v"; depends=[locits wavethresh]; }; lpc = derive2 { name="lpc"; version="1.0.2.1"; sha256="1g1dzm7pcrbrdk1dmhbdhj58j69dzar41al3i8q4gysf3adqzsvv"; depends=[]; }; - lpcde = derive2 { name="lpcde"; version="0.1.2"; sha256="1i20ipc96anm40j10j9098sy7jhz7zcjslr12va2i47fhw1mfy88"; depends=[combinat ggplot2 MASS Matrix mvtnorm purrr Rcpp RcppArmadillo]; }; + lpcde = derive2 { name="lpcde"; version="0.1.4"; sha256="0gb130x8177bcw3snrndm87p21na6v3zayqcn9z16rviiyy1nscg"; depends=[combinat ggplot2 MASS Matrix mvtnorm purrr Rcpp RcppArmadillo Rdpack]; }; lpda = derive2 { name="lpda"; version="1.0.1"; sha256="0q54jid3vj5js0bhf4v4w5v3pmh4rr8dv0igcb2525fl731jsqfk"; depends=[Rglpk]; }; lpdensity = derive2 { name="lpdensity"; version="2.4"; sha256="1vbbvg2wb2jggqls185bwpm8c8ky6693kai3lr5xz4r8f6ivdm29"; depends=[ggplot2 MASS]; }; lphom = derive2 { name="lphom"; version="0.3.5-5"; sha256="08rnymy72p0c06mx6n70s2xirigp21d7g3dwnapad7w7iajw7iqf"; depends=[lpSolve]; }; @@ -12999,9 +13215,9 @@ in with self; { lrequire = derive2 { name="lrequire"; version="0.1.3"; sha256="03c8h9v2xhlv7bj5jv117a27gaqaly2kdxs9zyihsm9yh9rg3d79"; depends=[]; }; lrgs = derive2 { name="lrgs"; version="0.5.4"; sha256="0mf6wqlv21z68w81hvpmhgngvdsklf3x2678d9c9lxfmqmpv4a7y"; depends=[mvtnorm]; }; lrmest = derive2 { name="lrmest"; version="3.0"; sha256="1yddkgza672z9y0ipgl92pg9prhmr387zsqf0qbi9k2yzfz2vvs6"; depends=[MASS psych]; }; - lrstat = derive2 { name="lrstat"; version="0.2.4"; sha256="1qwyp7dg6w2wr7rgyn6gwin502azygy33966a62rycl65shdbljp"; depends=[lpSolve mvtnorm Rcpp shiny]; }; + lrstat = derive2 { name="lrstat"; version="0.2.7"; sha256="1r25716gq78imyy0f2cja2vh1ldjn5766iaa65x4z5rdcz3gcd80"; depends=[lpSolve mvtnorm Rcpp shiny]; }; lsa = derive2 { name="lsa"; version="0.73.3"; sha256="16k1g0kh3yaw7azg76aqf3hn3b6jgqg92xx0syai8l0my9ci2zzh"; depends=[SnowballC]; }; - lsasim = derive2 { name="lsasim"; version="2.1.4"; sha256="197grlgxvilw43lyjprmik0pjgns979xksi4pv422h9x9fwwyqpn"; depends=[cli mvtnorm polycor]; }; + lsasim = derive2 { name="lsasim"; version="2.1.5"; sha256="1qxnf2s02sw5zx9snyszr6h5n2qw81d2qrj8i1d37kzk1hzkvxcd"; depends=[cli mvtnorm polycor]; }; lsbclust = derive2 { name="lsbclust"; version="1.1"; sha256="1pbai58pfvhfcrd0nj13d54vrn9wrx2xapqhgqa1pkrjwbk5amj7"; depends=[clue doParallel foreach ggplot2 gridExtra mvtnorm plyr Rcpp reshape2]; }; lsbs = derive2 { name="lsbs"; version="0.1"; sha256="14aq80zg89lq7hffv1v1m4n7hbzqzxkazcga4y2fq40ij3v7kv6n"; depends=[ks Matrix numDeriv]; }; lsdbc = derive2 { name="lsdbc"; version="0.1.0"; sha256="1dk07zlvwwfhlll21ql264gx94v3jvgidy3yvxidwmhnyc1vx80x"; depends=[]; }; @@ -13009,7 +13225,7 @@ in with self; { lsirm12pl = derive2 { name="lsirm12pl"; version="1.3.1"; sha256="0w26zq4lylg9x2qyxx4d46phlkih2cdcgjar45k9x7fav8gw6cry"; depends=[coda dplyr fpc ggplot2 GPArotation gridExtra kernlab MCMCpack plotly pROC Rcpp RcppArmadillo rlang spatstat spatstat_geom spatstat_random]; }; lsl = derive2 { name="lsl"; version="0.5.6"; sha256="1hwzklx1qp5ljc059j2hridg3caw4cgn7rbqs8xh2arzcvqdw3rb"; depends=[ggplot2 lavaan reshape2]; }; lslx = derive2 { name="lslx"; version="0.6.11"; sha256="1mjkz3zgcajrrkq1igqq0a1rpxwvv41ankr5mj6mcjqpg4ggng1p"; depends=[ggplot2 R6 Rcpp RcppEigen]; }; - lsm = derive2 { name="lsm"; version="0.2.1.2"; sha256="1sp6c3r3g0q9lynzpcjvfwrp7xml11q66cqcisjvidm79vxjgi5v"; depends=[dplyr ggplot2]; }; + lsm = derive2 { name="lsm"; version="0.2.1.4"; sha256="0dfjz547fkysghv5mb5xhc91aqijz7falir1rkwshib55bb3ijl7"; depends=[dplyr ggplot2]; }; lsmeans = derive2 { name="lsmeans"; version="2.30-0"; sha256="1z35dzfgib0fk201gzjhgmnryhl3mkz50gz8g6nfv4mj9kzc5x5f"; depends=[emmeans]; }; lsnstat = derive2 { name="lsnstat"; version="1.0.0"; sha256="1ydda46j5yv51yq1pgf4nihsg5ihayk603vn3yxzhnnb1r3azh4w"; depends=[dplyr httr jsonlite]; }; lspartition = derive2 { name="lspartition"; version="0.4"; sha256="1n0pag5l4kx211dl5z9xbqijp7l04jcm0i6jgvkk2b0x9v32q4r5"; depends=[combinat dplyr ggplot2 MASS matrixStats mgcv pracma]; }; @@ -13028,7 +13244,7 @@ in with self; { ltsk = derive2 { name="ltsk"; version="1.1.1"; sha256="01f0jvm4fihssgfhb062wlqqvrfdikixycxfz93dkqahjmrjz5dl"; depends=[]; }; ltsspca = derive2 { name="ltsspca"; version="0.1.0"; sha256="0hgl2zd8y01z8mhnqg1hlv1l7klpwhwk7q8b99pw9vgnh1f2gnfs"; depends=[pracma Rcpp RcppArmadillo]; }; ltxsparklines = derive2 { name="ltxsparklines"; version="1.1.3"; sha256="0f2ycgjdw9z9m730wh3k362aq71mwmxhnsxhcjxhj8c4lknr50br"; depends=[]; }; - luajr = derive2 { name="luajr"; version="0.1.6"; sha256="171bzic19brmrvd201xr1jaj56a830iflkzb9xxbly4rh0kagqxx"; depends=[]; }; + luajr = derive2 { name="luajr"; version="0.1.7"; sha256="123zvkq57n787l1aqnyddxzd1d45899hlbgb5ikzk1xy85851zsr"; depends=[]; }; lubridate = derive2 { name="lubridate"; version="1.9.3"; sha256="1zvzycng2hsks9d7552nb93abzjrs43c975rc16s3c1is8318vib"; depends=[generics timechange]; }; luca = derive2 { name="luca"; version="1.0-6"; sha256="0zrxrwpk7iblpysd4fbh50s5bmvd5l1bzbd8rdyk06wby6bcs1rk"; depends=[genetics survival]; }; lucas = derive2 { name="lucas"; version="1.0"; sha256="1ws35f2pq2y7nnik40nj4qpz1d499gfc5isr1409pwy6r5knb78q"; depends=[DBI plyr rpostgis RPostgreSQL]; }; @@ -13047,20 +13263,21 @@ in with self; { lvplot = derive2 { name="lvplot"; version="0.2.1"; sha256="0zby40866kvqxdz4hk6r0f4rfh7rzmy0n899cjjg5rqzcap7s5di"; depends=[ggplot2 RColorBrewer tibble]; }; lwgeom = derive2 { name="lwgeom"; version="0.2-14"; sha256="174jpsri9xpr9zb5hvzqhbhnajqw3aa38ajy1skl7ky8vgvnrnr6"; depends=[Rcpp sf units]; }; lwqs = derive2 { name="lwqs"; version="0.5.0"; sha256="11hkz3b3sgm6v30gwaq463klljjf6c4qx26a5ccc1wl6r439gxqp"; depends=[data_table gamm4 ggplot2 gridExtra gWQS plyr]; }; + lzstring = derive2 { name="lzstring"; version="0.1.2"; sha256="1wp822my088gzp8n1w97rk081qijls3p0lx749l1y68j44mhk8w9"; depends=[cpp11]; }; m2b = derive2 { name="m2b"; version="1.0"; sha256="0agzw67mmwrw1f61yn24z5w1pgjssdapg3li0a53i3ylnij45mzr"; depends=[caret caTools e1071 geosphere ggplot2 randomForest]; }; m2r = derive2 { name="m2r"; version="1.0.2"; sha256="0vwvpalap4z5x2004c92n0ka7i4l64ry5n8pmxs4vjpd8fyx91gc"; depends=[gmp memoise mpoly Rcpp stringr usethis]; }; m5 = derive2 { name="m5"; version="0.1.1"; sha256="0cw9b31j564qc5s1b37r1p425p4gndlzgwy34cn0m2c65jwiyf6h"; depends=[data_table lubridate stringi]; }; m61r = derive2 { name="m61r"; version="0.0.3"; sha256="0mhi70rvqgzrgmp261shlq5jdxxhjawdxfsfr0cyfyyils7xs7ln"; depends=[]; }; mAr = derive2 { name="mAr"; version="1.2-0"; sha256="1yrsa2k9v11b3jczblf7fwdmyyybbmychl5cqlfj309s986zry5d"; depends=[MASS]; }; - mBvs = derive2 { name="mBvs"; version="1.6"; sha256="14ds64mm0nrrpfr01kmx5fsvl0kqzhiq8qgmzgmyzs7c4hcs3050"; depends=[]; }; + mBvs = derive2 { name="mBvs"; version="1.92"; sha256="1r6dv8w4y6d4m4yw84cnsvl7f3r5dhj3qrrzk7qb23gzds8pcv84"; depends=[mvtnorm]; }; mDAG = derive2 { name="mDAG"; version="1.2.2"; sha256="0k85sl0jmpcpiz92cz6x3kd8jc6yyfv9z4wm1kyaikcf5q4qlad4"; depends=[bnlearn logistf mgm nnet pcalg Rcpp RcppArmadillo]; }; mExplorer = derive2 { name="mExplorer"; version="1.0.0"; sha256="1563d9r7f25vw5vsph21z3dwz9n40dpaiyx28ay1bbp5i1x2l3rb"; depends=[nnet qusage]; }; mFD = derive2 { name="mFD"; version="1.0.7"; sha256="1jr5d5669mz4ifacaghnj7109ypfrikagjgxi2a33iqj0g63x3hp"; depends=[ade4 ape betapart cluster dendextend FactoMineR gawdis geometry ggplot2 ggrepel Hmisc patchwork reshape2 rstatix vegan]; }; mFDP = derive2 { name="mFDP"; version="0.1.0"; sha256="0mvqg3qpv1zcj5lsk36dw4qs75i66cmv4qazpmsilhfh0v46p2dx"; depends=[]; }; - mFLICA = derive2 { name="mFLICA"; version="0.1.5"; sha256="0znjp95ifwqpqwrnlcb77r1cdwpvbpql6ggnck018xddc8x40hzv"; depends=[dtw ggplot2]; }; + mFLICA = derive2 { name="mFLICA"; version="0.1.6"; sha256="02h53v124j38scl816ci8z5wfcrmh9p6m08fk2hhw973h7c6xbmy"; depends=[ggplot2]; }; mFilter = derive2 { name="mFilter"; version="0.1-5"; sha256="0anc93mciq8j64knd0i38sfgv10w1gd375wnfzn1fq8sj3lby7kb"; depends=[]; }; mHG = derive2 { name="mHG"; version="1.1"; sha256="1rz5ncrvvv9h9grls15apa63v2nh9j87fmp4mwjjil37jx6a5zki"; depends=[]; }; - mHMMbayes = derive2 { name="mHMMbayes"; version="1.0.0"; sha256="19zqqq0dz3fscch5vxy1lfyq4hfmdbvzfqqm123l5snbdk52l4li"; depends=[MCMCpack mvtnorm Rcpp Rdpack]; }; + mHMMbayes = derive2 { name="mHMMbayes"; version="1.1.0"; sha256="1z13zzim90akaz82dbp8s81zyhcd3xmx3wmqvkcaq5wqh2p64s7a"; depends=[MCMCpack mvtnorm Rcpp Rdpack]; }; mMARCH_AC = derive2 { name="mMARCH.AC"; version="2.9.2.0"; sha256="0lp32m6cfplbm72g0j1cm1c7rcpmy5jrsd3p577p9a4bwqf5ynxc"; depends=[abind accelerometry ActCR ActFrag cosinor cosinor2 denseFLMM dplyr GGIR ineq kableExtra minpack_lm refund survival tidyr xlsx zoo]; }; mMPA = derive2 { name="mMPA"; version="1.2.0"; sha256="0g4zjknz52fpk7f436j95aw93aa8q2jwcrb1pqkm294kr276nnd9"; depends=[]; }; mRMRe = derive2 { name="mRMRe"; version="2.1.2.1"; sha256="1nbz2rq6fzzy01vhizpszw47c8yha1rvks6hf5dh0dx4h8p3jg6m"; depends=[igraph survival]; }; @@ -13089,10 +13306,10 @@ in with self; { madness = derive2 { name="madness"; version="0.2.8"; sha256="1a0jcvy7xq654hcjv0nsjfhwh9fgxzhk7grjy209mgzmkivdinpq"; depends=[expm Matrix matrixcalc]; }; madr = derive2 { name="madr"; version="1.0.0"; sha256="0lzg75kphz4a0w6n0jbsq87g72jvrbkyas4j813mryq2nv4lmsl4"; depends=[]; }; madrat = derive2 { name="madrat"; version="3.6.4"; sha256="03wkzpr0nx50li0g69fn2fznfh6nbg4sdpymsilx3387v50vc9vs"; depends=[callr digest igraph magclass Matrix pkgload renv stringi withr yaml]; }; - madshapR = derive2 { name="madshapR"; version="1.0.3"; sha256="1dnw1mpby6kmfmya2vrsrk7lx9f1dh8sp7rwp29kjnm6j6inzm60"; depends=[bookdown crayon dplyr DT fabR forcats fs ggplot2 haven janitor knitr lifecycle lubridate readr rlang stringr tidyr tidytext]; }; + madshapR = derive2 { name="madshapR"; version="1.1.0"; sha256="035hxkkhxi68id1f3q9qyl82kzphq9als60x7wv03gmzi6fn85zy"; depends=[bookdown crayon dplyr DT fabR forcats fs ggplot2 haven janitor knitr lifecycle lubridate readr rlang stringr tidyr tidytext]; }; madsim = derive2 { name="madsim"; version="1.2.1"; sha256="11gfyimbz363p5xy1x6rsz5fcgzcr55myc5aaz5lazjkcnfn17aq"; depends=[]; }; magclass = derive2 { name="magclass"; version="6.13.2"; sha256="1nv500vlmrl4d8rkmrk0fkklwigablb7ybgwr42zx50vjd9wz850"; depends=[abind data_table]; }; - magi = derive2 { name="magi"; version="1.2.2"; sha256="0pj45j5qy3gqcl1v95cv2bmxsiimyz87wprf6g1v5sgb90fg2yjp"; depends=[BH deSolve gridBase gridExtra Rcpp RcppArmadillo roptim]; }; + magi = derive2 { name="magi"; version="1.2.3"; sha256="047wzhqkdpjlhz7r6cks7pwvjc4bwv8hsd41zqm5gcvfhwjrnyxm"; depends=[BH deSolve gridBase gridExtra Rcpp RcppArmadillo roptim]; }; magic = derive2 { name="magic"; version="1.6-1"; sha256="0xkrrg5qk62pfqx0avijdjaljzslpwd0hv2m52qnqwrbx5xfqyfa"; depends=[abind]; }; magicLamp = derive2 { name="magicLamp"; version="0.1.0"; sha256="1nfcnbqd6vawz8l3vgkbhmm462xdvaa4pn6axzmz8hl05xv2k3cv"; depends=[httr tibble]; }; magicaxis = derive2 { name="magicaxis"; version="2.4.5"; sha256="04wj0g345mlndd1s7v7klxldxlp293xdgjyrnfpzxckg59804j3d"; depends=[celestial mapproj MASS plotrix RANN sm]; }; @@ -13113,7 +13330,7 @@ in with self; { makeProject = derive2 { name="makeProject"; version="1.0"; sha256="09q8xa5j4s5spgzzr3y06l3xis93lqxlx0q66s2nczrhd8nrz3ca"; depends=[]; }; makedummies = derive2 { name="makedummies"; version="1.2.1"; sha256="062rvijhy2dybpgxzp44cg46bfyb8lp9yasv3mhskhf3yg717sqp"; depends=[tibble]; }; makeit = derive2 { name="makeit"; version="1.0.1"; sha256="1x0dwffzz1i88h9mqcigihm52fi47439jmd1v9712sf3h7hf5iiy"; depends=[]; }; - makemyprior = derive2 { name="makemyprior"; version="1.2.0"; sha256="0a99jabji1rlpgxayxvydnvp8wbbg6fb0694xbvwyqqva18yb9m2"; depends=[ggplot2 MASS Matrix rlang shiny shinyBS shinyjs visNetwork]; }; + makemyprior = derive2 { name="makemyprior"; version="1.2.1"; sha256="02zhgskkfr964g813rly0lym4j0msgmyggfgz6l00vcpnffqy9fq"; depends=[ggplot2 MASS Matrix rlang shiny shinyBS shinyjs visNetwork]; }; makepipe = derive2 { name="makepipe"; version="0.2.1"; sha256="0mhabnmpvjamgam63nrjdimn94azn8crafr9jcwsr08lzlbv9kmv"; depends=[cli nomnoml R6 roxygen2]; }; maketools = derive2 { name="maketools"; version="1.3.0"; sha256="06n14v9wrvbdplb42w7yqjjf8r995335fs2pn2b5848m0mrknsbv"; depends=[sys]; }; makeunique = derive2 { name="makeunique"; version="1.0.0"; sha256="0pf8cl6p3q9fzj20s4gm8amw29291xf6711v0pmp0rcnwva1zav0"; depends=[]; }; @@ -13130,22 +13347,22 @@ in with self; { manet = derive2 { name="manet"; version="2.0"; sha256="1dnacgkdjmn7yiqk71qx5jgfipbpvqfdnrdd8wm0b9p8kgw4x7n4"; depends=[combinat igraph mclust MCMCpack]; }; manhattanly = derive2 { name="manhattanly"; version="0.3.0"; sha256="007qvfzq8fyvnirywfpl6n1gqxxizz32z4xbgnnx7riyb7nxl1qh"; depends=[ggplot2 magrittr plotly]; }; manhplot = derive2 { name="manhplot"; version="1.1"; sha256="17yw10gpfp6bqmilb09v61jd2amz6cv1z38si4nqnhbvmac065qd"; depends=[ggplot2 ggrepel gridExtra reshape2]; }; - manifestoR = derive2 { name="manifestoR"; version="1.5.0"; sha256="0b4x4ampzmxcmlcyvl683rwynzwjg1cyx5zpamgy8027fh376zcp"; depends=[base64enc dplyr DT functional htmltools htmlwidgets httr jsonlite magrittr NLP psych purrr readr tibble tidyselect tm zoo]; }; + manifestoR = derive2 { name="manifestoR"; version="1.6.0"; sha256="1ghzhsd7apib775h2nmv33mvwg5yqwp5w9bn7alppgfa16yznf31"; depends=[base64enc dplyr DT functional htmltools htmlwidgets httr jsonlite magrittr NLP psych purrr readr tibble tidyselect tm zoo]; }; manifold = derive2 { name="manifold"; version="0.1.1"; sha256="1amvx0f0q4s2qgn7q23gp967bcm0djbnb8bmf1bf3fm3iyn432hv"; depends=[Matrix Rcpp RcppArmadillo]; }; manipulate = derive2 { name="manipulate"; version="1.0.1"; sha256="1klknqdfppi5lf6zbda3r2aqzsghabcsaxmvd3vw3cy3aa984zky"; depends=[]; }; manipulateWidget = derive2 { name="manipulateWidget"; version="0.11.1"; sha256="1dpgzmiv08afm57yxr017b014lfn9h3pa4w65prk5k3dgn6p4wsv"; depends=[base64enc codetools htmltools htmlwidgets knitr miniUI shiny shinyjs webshot]; }; manta = derive2 { name="manta"; version="1.0.1"; sha256="1qlmpg4afplhi4m3maws0njx11am28f7hry9rb3k9mxlvss6cr66"; depends=[]; }; - manydata = derive2 { name="manydata"; version="0.9.2"; sha256="1pd8fdj2sccqakyf2d2mdnkbsdx5pjb3pr81y7hxy557fahhxbff"; depends=[cli dplyr ggplot2 httr jsonlite messydates plyr purrr remotes stringr tidyr usethis zoo]; }; + manydata = derive2 { name="manydata"; version="0.9.3"; sha256="18v7sm5i3xnffcv3p17xb5hx0dnlyarahv6b7j0208d7hsjg2pf0"; depends=[cli dplyr ggplot2 httr jsonlite messydates plyr purrr remotes stringr tidyr usethis zoo]; }; manymodelr = derive2 { name="manymodelr"; version="0.3.7"; sha256="0kc4y9i21qkcg0pkwlas2mm06s54s70w5ybw4215qjwiy6xax268"; depends=[caret dplyr e1071 ggplot2 lme4 Metrics]; }; - manymome = derive2 { name="manymome"; version="0.1.14"; sha256="0w8gf920qj46y62ga017rk0f4306jasqprplfn7j3vdnx8l9qmdr"; depends=[boot ggplot2 igraph lavaan MASS pbapply]; }; + manymome = derive2 { name="manymome"; version="0.2.2"; sha256="1j7rvk3xdxxji7l1jqi0fgv9x9vwrymdmfpj7plg8vc53apnfy5f"; depends=[boot ggplot2 igraph lavaan MASS pbapply]; }; manymome_table = derive2 { name="manymome.table"; version="0.3.0"; sha256="01znxw82k2ycp8cncbayn0c4jhkydd5nvydfyxv1bwgixdkad1ff"; depends=[flextable manymome]; }; manynet = derive2 { name="manynet"; version="0.4.4"; sha256="1k17yikr7p6pvx5sm3k4xr0954r0a9sllrwywbkwz11w5703sk3y"; depends=[dplyr ggplot2 ggraph igraph network pillar tidygraph]; }; maotai = derive2 { name="maotai"; version="0.2.5"; sha256="1axr16xs366011vkx3j8mljq98923kscz8wrl9m1zprw3pqif6jr"; depends=[cluster dbscan fastcluster labdsv Matrix pracma RANN Rcpp RcppArmadillo RcppDist Rdpack RSpectra Rtsne shapes]; }; - mapSpain = derive2 { name="mapSpain"; version="0.9.0"; sha256="15ww2b9n3vd41dm6iz13ir2z477smabyc7417rvbnjr09jr7h37w"; depends=[countrycode giscoR rappdirs sf]; }; + mapSpain = derive2 { name="mapSpain"; version="0.9.1"; sha256="144i03v3sjq1fsywhc2dgkm7p5gg019gvd5milga6hiirnhm3k5d"; depends=[countrycode giscoR rappdirs sf]; }; mapStats = derive2 { name="mapStats"; version="3.1"; sha256="1jf5dgf9i9339xzk9fbipy9b2fkwdv6sy1ciif921snwj176zck9"; depends=[classInt colorspace Hmisc lattice RColorBrewer reshape2 sf sp survey ttutils]; }; - mapaccuracy = derive2 { name="mapaccuracy"; version="0.1.1"; sha256="0bw69w2875z8s6ywifyx5yphzfrcv2nfbqbz1hy90x93iw6v5y0n"; depends=[assertthat]; }; + mapaccuracy = derive2 { name="mapaccuracy"; version="0.1.2"; sha256="1bz1c346y70wzv900lvf63j59f3sk9fdf1nh8p81fz4f5dbck1qp"; depends=[]; }; mapbayr = derive2 { name="mapbayr"; version="0.10.0"; sha256="07bl6vp86c7ydwln130d2ccvizwjvd7zq1l4ifl1nspbh6p0i359"; depends=[dplyr ggplot2 magrittr mrgsolve progress purrr rlang stringr tidyr]; }; - mapboxapi = derive2 { name="mapboxapi"; version="0.5.3"; sha256="0xb75j7k2pl0c726wamv15ask5xqajmwxf0b0ssy6y1xjb46frar"; depends=[aws_s3 curl dplyr geojsonsf httr jpeg jsonlite leaflet magick png protolite purrr raster rlang sf slippymath stringi tidyr units]; }; + mapboxapi = derive2 { name="mapboxapi"; version="0.6"; sha256="1nvs5ikg3vrcvbidpl50gp84vjig7j3k1wjkhqk6jpr4dspi4p60"; depends=[aws_s3 curl dplyr geojsonsf htmltools httr jpeg jsonlite leaflet magick png protolite purrr raster rlang sf slippymath stringi tidyr units]; }; mapboxer = derive2 { name="mapboxer"; version="0.4.0"; sha256="0f873js87dgk8nqnhpxh88svvsbnk81vkm7gycb62mkr4xqsgqs7"; depends=[geojsonsf htmltools htmlwidgets magrittr purrr yaml]; }; mapcan = derive2 { name="mapcan"; version="0.0.1"; sha256="1a4135wc1h4nzcv6xq0bg75i744wyq8p7q0ix7y2x2gb6s35w46k"; depends=[dplyr ggplot2 magrittr]; }; mapchina = derive2 { name="mapchina"; version="0.1.0"; sha256="0f6ayq4izqxcj0hi2vfg0pc239hxgg7abb5476v5mfjjyi156mni"; depends=[sf]; }; @@ -13156,8 +13373,9 @@ in with self; { mapi = derive2 { name="mapi"; version="1.0.5"; sha256="1yljvapzkb43i2sbqsmn5aqp95hm8gjkz8m41x1chwyfddrzjsbw"; depends=[data_table pbapply Rcpp sf]; }; mapiso = derive2 { name="mapiso"; version="0.3.0"; sha256="11mrvk45znna6irsd8mmkk8h63dm6wjlpsy0h8p3bldvk5mc8fi9"; depends=[isoband sf]; }; maplegend = derive2 { name="maplegend"; version="0.1.0"; sha256="1jngbampps5gn3xdy292466qq4nhx0k7c08mams84xmmb9jbq0h0"; depends=[]; }; - mapme_biodiversity = derive2 { name="mapme.biodiversity"; version="0.5.0"; sha256="0md2glm5zqqsf0vqxj14ln2l7cxx5cfg3v7kkikdx1nn38l6ixaz"; depends=[curl dplyr furrr httr magrittr progressr purrr R_utils rvest sf stringr terra tibble tidyr tidyselect]; }; - mapmisc = derive2 { name="mapmisc"; version="2.0.6"; sha256="1s8sp1yrdx43jwzxcqvkj74h33xrb9wh70gkgcs608z7l4rliam3"; depends=[geosphere terra]; }; + mapme_biodiversity = derive2 { name="mapme.biodiversity"; version="0.7.0"; sha256="093ffdmnfgfjs4ja07xp9knalnqx9il08vbkiq8i0y21g3q11k62"; depends=[dplyr furrr httr magrittr purrr R_utils sf terra tibble tidyr]; }; + mapmisc = derive2 { name="mapmisc"; version="2.1.0"; sha256="1syznp0kh4alv8p4sc6zmphkpqpk9si3sddfizqlprp3ypm5gi85"; depends=[geosphere terra]; }; + mapmixture = derive2 { name="mapmixture"; version="1.1.3"; sha256="0ndr0ds8fjlrx54042ch9ks07b6983fnqj84zih57aa4xk8y8sng"; depends=[bslib colourpicker dplyr ggplot2 ggspatial htmltools purrr rlang rnaturalearthdata sf shiny shinyFeedback shinyjs shinyWidgets stringr tidyr waiter]; }; mapping = derive2 { name="mapping"; version="1.4.1"; sha256="0c1kghgzkbicy35dgwbyw6085glagdnck4dkcj7z89i3mgrjm17s"; depends=[cartography curl dplyr geojsonio ggplot2 htmltools httr jsonlite leaflet leafpop leafsync mapview s2 sf stringi stringr tmap tmaptools viridisLite]; }; mappings = derive2 { name="mappings"; version="0.1"; sha256="1f7m6nbdzdcxsk4m8rh8fzrck8pzxl2lgfz5c6wramwmp8rxczzb"; depends=[]; }; mapplots = derive2 { name="mapplots"; version="1.5.2"; sha256="064a3jc7p4wh5x8rxmjap6kqkg19zfkq8ac820d9sm35d0fia3pd"; depends=[]; }; @@ -13170,26 +13388,26 @@ in with self; { mapsRinteractive = derive2 { name="mapsRinteractive"; version="2.0.1"; sha256="0v2ijx54nyfgnxh77d47lsflvqfcbdzza3finfx3z1dwl6sdd056"; depends=[gstat terra]; }; mapsapi = derive2 { name="mapsapi"; version="0.5.4"; sha256="0gk5k0zf3yzq7rzw17j7ph3fzpf6q6j777ri242wmi75xzkamrsc"; depends=[bitops httr RgoogleMaps sf stars xml2]; }; mapscanner = derive2 { name="mapscanner"; version="0.0.6"; sha256="017m33v2523rjmspfbzq1xnb3clzmbn4p1qqzp480j71wy5c1dry"; depends=[cli curl fs glue magick magrittr memoise pdftools png purrr raster Rcpp reproj RNiftyReg sf slippymath tibble]; }; - mapsf = derive2 { name="mapsf"; version="0.9.0"; sha256="16ynjfydwipg7x1l9l5hkqvrqz2a4yxs756il43hhgpz9i13pnqv"; depends=[classInt maplegend s2 sf]; }; + mapsf = derive2 { name="mapsf"; version="0.10.1"; sha256="134hmnlbc7pmazkfm3jmisklgpnxvjhdwfandxclxy4pfrp92ixq"; depends=[classInt maplegend s2 sf]; }; maptiles = derive2 { name="maptiles"; version="0.7.0"; sha256="064lxy2qzawbbdv69zpzkn2nbchvlcw4zjpxl5h44qrriivd60hh"; depends=[curl digest png sf slippymath terra]; }; maptpx = derive2 { name="maptpx"; version="1.9-7"; sha256="0f85i3vwr5rvz261z6j7x15gsahxrq4qqddfb0qyhypgihvwh857"; depends=[slam]; }; maptree = derive2 { name="maptree"; version="1.4-8"; sha256="1x35nk4fi2b62krcvcv187n5sbqrgvw4pbm7r19ps3jlanpi5ksm"; depends=[cluster rpart]; }; mapview = derive2 { name="mapview"; version="2.11.2"; sha256="1c18fc8r5anc9wn541dzhchys2pmxc7pp797bq065brs5drpyka1"; depends=[base64enc htmltools htmlwidgets lattice leafem leaflet leafpop png raster satellite scales servr sf sp]; }; - maq = derive2 { name="maq"; version="0.3.1"; sha256="1b835hw79kkmvmpln7mszczdhhqh5q371f2jviqabjl58b6wcsyd"; depends=[Rcpp]; }; + maq = derive2 { name="maq"; version="0.4.0"; sha256="1rfwnwx9qglr49ymhhpglywrc6w2ilryiwxykxy0rdawml4zcw3j"; depends=[Rcpp]; }; mar1s = derive2 { name="mar1s"; version="2.1.1"; sha256="1ljkvgxrramfx1rnp2rg6516mjxaa6s96amrnmqymnyjz7wlf37l"; depends=[cmrutils fda zoo]; }; maraca = derive2 { name="maraca"; version="0.7"; sha256="0sy5vmgkbcr1gi7l0hkdzdmibkgs1yvbgj14sfi4jc8zabwbpkz2"; depends=[checkmate dplyr ggplot2 hce lifecycle patchwork tidyr]; }; - marble = derive2 { name="marble"; version="0.0.2"; sha256="15m65ikk52khjrwgy2xl8pj671rf3yfqjghx2zdcs43afsyfisa0"; depends=[Rcpp RcppArmadillo]; }; + marble = derive2 { name="marble"; version="0.0.3"; sha256="1jrk7dvb6ni950skdfqav40wr9s942w6fiysg8y1mk6q69aihzf6"; depends=[Rcpp RcppArmadillo]; }; march = derive2 { name="march"; version="3.3.2"; sha256="1qdjajb5mkq2r7p224kbxhf01s75hry5c5hx1cnsb48dfzd2s5xg"; depends=[]; }; marcher = derive2 { name="marcher"; version="0.0-2"; sha256="0hcxbfrwniih4kvx5sxhlffz1pc87kf52v8hvaf193rhhdykis5q"; depends=[magrittr Matrix minpack_lm mvtnorm numDeriv plyr RColorBrewer scales zoo]; }; marelac = derive2 { name="marelac"; version="2.1.11"; sha256="0wl1z4sq61qq8d3szcd772rw35mlcrf7d9g8q9dr0znwvfj9gqdh"; depends=[seacarb shape]; }; marg = derive2 { name="marg"; version="1.2-2.1"; sha256="1r6rl7dhvm8dghm7pm4hfw3924qja65hczl6d47v9ixnv4rxyzr9"; depends=[statmod survival]; }; margaret = derive2 { name="margaret"; version="0.1.4"; sha256="1hyflwfw9pphcbxnx9wf0alqi17s5k3j7wvh95ka2h9fvyrpj11r"; depends=[devtools dplyr httr igraph lubridate purrr readr rlang rvest scholar stringi stringr tibble tidyr tidytext tidyverse treemapify usethis widyr writexl]; }; - marginaleffects = derive2 { name="marginaleffects"; version="0.18.0"; sha256="1q8jlhwka0ji70agj98c3g01894xnl5cj9khhr1imk3ljx72fxrp"; depends=[checkmate data_table generics insight Rcpp RcppEigen rlang]; }; - marginalizedRisk = derive2 { name="marginalizedRisk"; version="2024.1-27"; sha256="0lsa4q0jmc9ldjsfpbw7kxg2wd0gca9w2299j38md3x5lb2k87g5"; depends=[]; }; - margins = derive2 { name="margins"; version="0.3.26.1"; sha256="00n3ldhln4dk8r8dck5wvv39hdgb3nynqpp192lhf74x6zs1h4j4"; depends=[data_table MASS prediction]; }; + marginaleffects = derive2 { name="marginaleffects"; version="0.21.0"; sha256="1zq9xkaacgy3d3rsbhdjaprd352mcpbfwn9jazijx6csjs5pxqmp"; depends=[checkmate data_table generics insight Rcpp RcppEigen rlang]; }; + marginalizedRisk = derive2 { name="marginalizedRisk"; version="2024.5-17"; sha256="1f0qql4nvd5bkvkx0wn8w7fjzplabm5is8ms8rl6bpayfhaa6zai"; depends=[]; }; + margins = derive2 { name="margins"; version="0.3.27"; sha256="1jlxg8pwmyd4nzmczp2909rjd68nz7vl8m2g35jywh05b85b0slk"; depends=[data_table MASS prediction]; }; marima = derive2 { name="marima"; version="2.2"; sha256="03nvh93r4052li84yjqzc106gwh1542q9s192s980gs6sgy8scm6"; depends=[]; }; - mark = derive2 { name="mark"; version="0.7.0"; sha256="0zbzp4y7gh6bq20ymfpmfihxn0z8gl0xn5fcshikh59ikqrm0mff"; depends=[cli fs fuj magrittr rlang]; }; - markdown = derive2 { name="markdown"; version="1.12"; sha256="182b290dj0c6m4qf4azyih521ski0ssk1awzmbzfbqlcy3lf7p3x"; depends=[commonmark xfun]; }; + mark = derive2 { name="mark"; version="0.8.0"; sha256="16gzi253s6mdqr5axhp1fk0vcqc2sslnb8nmwjxarrcgh8d22ba3"; depends=[cli fs fuj magrittr rlang]; }; + markdown = derive2 { name="markdown"; version="1.13"; sha256="1nfgngskgb4r34r3cnkm0gn7p1axpcb7rpyi0jxg4nygfk322m1q"; depends=[commonmark xfun]; }; markdownInput = derive2 { name="markdownInput"; version="0.1.2"; sha256="1qxil2liikbbn6w8niyc03fwqvwvdv6wiy98ip8j77729i7g2hln"; depends=[markdown shiny shinyAce]; }; marked = derive2 { name="marked"; version="1.2.8"; sha256="1i5vay60g6ddqnnqdj89yhsqxdcw9yzqpwq9gv7qc1psb8f77052"; depends=[bookdown coda data_table expm kableExtra knitr lme4 Matrix numDeriv optimx R2admb Rcpp TMB truncnorm]; }; markerpen = derive2 { name="markerpen"; version="0.1.1"; sha256="0i9md9vbqkxibjkn37givxzq8mq0232cvv2fyz6g8cj6flxm6vzr"; depends=[Rcpp RcppEigen RSpectra]; }; @@ -13203,17 +13421,17 @@ in with self; { marmap = derive2 { name="marmap"; version="1.0.10"; sha256="0zmik6hpc44syknn7k9pbmy01jpnlp4sc9n3rhslrpnks39l0hvq"; depends=[adehabitatMA DBI gdistance geosphere ggplot2 ncdf4 plotrix raster reshape2 RSQLite shape sp]; }; marp = derive2 { name="marp"; version="0.1.0"; sha256="0vywqsvmhghldrpnh2dpkgz41r7q463whfhgrn38pg8jnyhliiwi"; depends=[gtools statmod VGAM]; }; marqLevAlg = derive2 { name="marqLevAlg"; version="2.0.8"; sha256="172zr3jg48wr631l61811vd04llm3chirdhbp2mc8zryn3bbcd6n"; depends=[doParallel foreach]; }; + marquee = derive2 { name="marquee"; version="0.1.0"; sha256="150rnn4pk8wc5h1gpb7grsyxxbf3xjjain03xfc0hnx8s6c3fjzg"; depends=[cli cpp11 glue jpeg png rlang systemfonts textshaping vctrs]; }; marradistrees = derive2 { name="marradistrees"; version="1.0"; sha256="1pl7mw354wczyplylk0w6k026ngf741dn4lq7cd87hnjcfifn86i"; depends=[]; }; - mas = derive2 { name="mas"; version="0.2.1"; sha256="1c62fa1r36nymf2s6lxa6zg0j9zl527szn1gh3m0mcs1nx36lal5"; depends=[Rcpp RcppEigen truncdist]; }; + mas = derive2 { name="mas"; version="0.3"; sha256="1d6ca7dj8bxrq0ka552sjb38j004bl1lzhfm14syr4h4wp08028m"; depends=[Rcpp RcppEigen truncdist]; }; mase = derive2 { name="mase"; version="0.1.5.2"; sha256="0fvbsw6y5whysm70wr74pzj5knnw91gzpihi9snq69q1axg7yc17"; depends=[boot dplyr ellipsis glmnet Rcpp RcppEigen Rdpack rpms survey tidyr]; }; mashr = derive2 { name="mashr"; version="0.2.79"; sha256="11pqhnzp1svhs565hm0v15ip1pgnl609ssm4d0qzl8vm4xq3d2qm"; depends=[abind ashr assertthat mvtnorm plyr Rcpp RcppArmadillo RcppGSL rmeta softImpute]; }; maskRangeR = derive2 { name="maskRangeR"; version="1.1"; sha256="1pdj0jdxrqss6hp20163fh1ywdd6wmwjl4s8gnpd3m9d1j955gr3"; depends=[dplyr e1071 lubridate magrittr raster sp]; }; masscor = derive2 { name="masscor"; version="0.0.7.1"; sha256="1153gx648csmzc2znf7l84f134qzp238hqj2s60r9najk1pczgf6"; depends=[metRology]; }; massiveGST = derive2 { name="massiveGST"; version="1.2.3"; sha256="13qhn15gr4fvri1p843zz7y1q6701qmkxq5lysydfmdaxp5hsaxd"; depends=[formattable igraph msigdbr visNetwork WriteXLS]; }; - mastif = derive2 { name="mastif"; version="2.2"; sha256="19i6hpwc6shyz9gr6xakg9s79crv1zwn8sqraf9k62scc22dl1p9"; depends=[cluster corrplot RANN Rcpp RcppArmadillo repmis robustbase stringi stringr xtable]; }; + mastif = derive2 { name="mastif"; version="2.3"; sha256="04m2cpcq1n27zmckj6hz6yvzcs6ray53z4nwab3vza9pjaa0m6ab"; depends=[cluster corrplot RANN Rcpp RcppArmadillo repmis robustbase stringi stringr xtable]; }; matRiks = derive2 { name="matRiks"; version="0.1.3"; sha256="0npl1dkjc4q4rgfhqd80xg7v751dkxbfc3rnj93rw3z2mdwkk50i"; depends=[DescTools]; }; matahari = derive2 { name="matahari"; version="0.1.3"; sha256="03mhn4qh1vcz2hr0mxp6gijwgrzvbpfb8dq7lqhchbk5gq5g3fnh"; depends=[clipr jsonlite purrr readr rlang rstudioapi tibble]; }; - match2C = derive2 { name="match2C"; version="1.2.4"; sha256="05g0g471dfxrfxq9a5l5zgj16m4kh39wfihjj8fdd9b7qxji7ps8"; depends=[ggplot2 mvnfast rcbalance Rcpp]; }; matchFeat = derive2 { name="matchFeat"; version="1.0"; sha256="0jh484rr71b7887igfslbg7xbr661l9c34d650xd7ajx4gfpn540"; depends=[clue foreach]; }; matchMulti = derive2 { name="matchMulti"; version="1.1.12"; sha256="1mkp4pkqhfrv3a0js8yc25gd2ifk8wwyrsskwggyxpqv6pnmpapw"; depends=[coin dplyr magrittr MASS mvtnorm plyr rcbsubset rlang sandwich weights]; }; matchingMarkets = derive2 { name="matchingMarkets"; version="1.0-4"; sha256="0rrwzbzb8nmqriw0kvk07ypmvbxg429xfv79a60s79qqffc1vryd"; depends=[lattice lpSolve partitions Rcpp RcppArmadillo RcppProgress rJava]; }; @@ -13238,7 +13456,7 @@ in with self; { matrixLaplacian = derive2 { name="matrixLaplacian"; version="1.0"; sha256="1ixqdv3sz3sc79wn3vqhlq79j7x7cvl878m5hgvbcg6klfvlmmci"; depends=[scatterplot3d]; }; matrixNormal = derive2 { name="matrixNormal"; version="0.1.1"; sha256="0l89s33sjxjb7dyzfny6v7cjw8qmlps4z1bjmlzvcka4qbn6kc2z"; depends=[mvtnorm]; }; matrixProfile = derive2 { name="matrixProfile"; version="0.5.0"; sha256="0nd54k878xf7hzwxawh03c3na4jfvb68afarkwrmmffjlp3i8a9g"; depends=[fftw signal TTR zoo]; }; - matrixStats = derive2 { name="matrixStats"; version="1.2.0"; sha256="0ws5lmzqm42vrn5791l21zr05l78x0xi6b89jw0gi0vjb4pc20z4"; depends=[]; }; + matrixStats = derive2 { name="matrixStats"; version="1.3.0"; sha256="0ni4jgw3jfbwakzrcz6jcjr1zsnaq924jz2a9d8kq92vv43ycgj1"; depends=[]; }; matrixStrucTest = derive2 { name="matrixStrucTest"; version="1.0.0"; sha256="06la9xmpi1viyjml4m1akbna3lwkz5lnq95v1nnf73i9zpfwz03k"; depends=[]; }; matrixTests = derive2 { name="matrixTests"; version="0.2.3"; sha256="0d7i00cxzszfdnjm8q5b72ildic8nig6fbw7rba6acdnllpp7sza"; depends=[matrixStats]; }; matrixcalc = derive2 { name="matrixcalc"; version="1.0-6"; sha256="09pk0ym6qzribxc6v18cpb6478i4r4kzxpkljjbb3n323zqx5iqb"; depends=[]; }; @@ -13251,6 +13469,7 @@ in with self; { matsindf = derive2 { name="matsindf"; version="0.4.8"; sha256="0jvgf87zrd1mrs3rrk4g1mfmf5ja1ww0pqf5cjvdw2id9vvc11jq"; depends=[assertthat dplyr lifecycle magrittr matsbyname purrr rlang tibble tidyr]; }; matuR = derive2 { name="matuR"; version="0.0.1.0"; sha256="01nxs4czzs1kcxk63nwr2gnvffmlnx3yfllrhi8khdkj498s6sx1"; depends=[dplyr ggplot2 ggrepel lubridate magrittr tidyr]; }; mau = derive2 { name="mau"; version="0.1.2"; sha256="1wgiai8f1kbjh9hfwv4m0kavd44ib5xb33p8m16zpawnw14m7sj5"; depends=[data_table ggplot2 gtools igraph RColorBrewer Rdpack stringr]; }; + mauricer = derive2 { name="mauricer"; version="2.5.4"; sha256="0v0wwyfq3zj6p1w6qx6jmqm4cr5jg6l3caq8ycxbylqcmrqqp6ij"; depends=[beastier stringr]; }; maxLik = derive2 { name="maxLik"; version="1.5-2.1"; sha256="0pcjhf8r7xz93qp4phs6l4i56y30ksivgv5ysnjh6khbdmicfm6h"; depends=[generics miscTools sandwich]; }; maxcombo = derive2 { name="maxcombo"; version="1.0"; sha256="1hwv38a07ry5fv53r2vizifj83xf98znix8nx4zshqyk38vblgp5"; depends=[dplyr magrittr MCMCpack mstate mvtnorm purrr rlang survival]; }; maximin = derive2 { name="maximin"; version="1.0-5"; sha256="1nk2qdj9kap16fakwzvswzhc3id7p06xhw48j8nnz5ffg79ai604"; depends=[plgp]; }; @@ -13272,20 +13491,20 @@ in with self; { mbir = derive2 { name="mbir"; version="1.3.5"; sha256="10sd5gk2k94cmi49nbpywqvh9bxj9q3psa3d00zmw1a7d6c0jjpd"; depends=[effsize psych]; }; mblm = derive2 { name="mblm"; version="0.12.1"; sha256="1fipb3bryaimr30lcxsxrn0ymv24z39swca7s4z7p9xcfg3ban1b"; depends=[]; }; mbmixture = derive2 { name="mbmixture"; version="0.4"; sha256="0g74jzhdf8grrp7pipj1m6hvyv4akycabm0ingy505a5a546ddzg"; depends=[numDeriv]; }; - mboost = derive2 { name="mboost"; version="2.9-9"; sha256="1apcd90xsr9hl5f1szhyibdx61zi4p6s9bvag8bdk2yj4kqq6fmz"; depends=[lattice Matrix nnls partykit quadprog stabs survival]; }; + mboost = derive2 { name="mboost"; version="2.9-10"; sha256="13dhs3q9gf5n6kwf6j3b29gvwxnkycfkpsw5fr4lnhllm9zs84z7"; depends=[lattice Matrix nnls partykit quadprog stabs survival]; }; mbr = derive2 { name="mbr"; version="0.0.1"; sha256="08534d0ssj5zli7880a2wzl46ydf87gn5xlv6xp0iph71wlpc52y"; depends=[data_table dplR MASS Matrix Rfast]; }; mbrdr = derive2 { name="mbrdr"; version="1.1.1"; sha256="1ck0l2zp10xlg2d99glb76fxhc1r21aknk8x8452v25gpaqvir4c"; depends=[]; }; mbreaks = derive2 { name="mbreaks"; version="1.0.0"; sha256="1vnrn7f19j52jn707ps9mjz5p0rgcm7mmwbq585hf4c4mbyglrbz"; depends=[ggplot2]; }; mbrglm = derive2 { name="mbrglm"; version="0.0.1"; sha256="0yxq1xk8qy5hpiqqldyrs78lp4ggdp5lj2lmh8rqq1xvsfr6nrh4"; depends=[enrichwith nleqslv]; }; mbsts = derive2 { name="mbsts"; version="3.0"; sha256="0qgb74ah1jq6rla2qkid1i75xjp2l9qxkpbbqilhzqg64rkcn9ha"; depends=[BBmisc ggplot2 KFAS MASS Matrix matrixStats MCMCpack pscl reshape2]; }; mc_heterogeneity = derive2 { name="mc.heterogeneity"; version="0.1.2"; sha256="1nsqbc4cqyg6g3s6ish3fbhqygy1kay68smbv0rhivp0x0dv7can"; depends=[boot_heterogeneity metafor]; }; - mc2d = derive2 { name="mc2d"; version="0.2.0"; sha256="07h2gvmdfqjydikxksbqhikihg46fv6xyn8vk5kyni6x75gp9abk"; depends=[ggplot2 ggpubr mvtnorm]; }; + mc2d = derive2 { name="mc2d"; version="0.2.1"; sha256="06kva55vm2cldd95caw5hfx0xjadyhgkqi0y9pyz7hs3zg0zq9xy"; depends=[ggplot2 ggpubr mvtnorm]; }; mcMST = derive2 { name="mcMST"; version="1.1.1"; sha256="058da7hhcizh902pj99wmf5mhfd6fhpjvf6cprbsl0fx19x9l14w"; depends=[BBmisc checkmate ecr ggplot2 grapherator gtools igraph qgraph vegan viridis]; }; mcStats = derive2 { name="mcStats"; version="0.1.2"; sha256="1r8dxdfcvznl2968xr6fbany1rh7wq5z1p7fhdf5g4b5l28j8pf9"; depends=[dplyr ggplot2 ggthemes gridExtra magrittr rlang tidyr]; }; mcauchyd = derive2 { name="mcauchyd"; version="1.2.0"; sha256="18615ac3z8vgkqr0xslaama9sbvn7m4p116vv8l2wz65f623l0d4"; depends=[lifecycle MASS rgl]; }; mcb = derive2 { name="mcb"; version="0.1.15"; sha256="0k986m2vyvfqxw3jmlyvf6r5bq68y92fymy03lffq5lmiqhypixj"; depends=[ggplot2 glmnet lars leaps MASS ncvreg reshape2 smoothmest]; }; mcbiopi = derive2 { name="mcbiopi"; version="1.1.6"; sha256="1caw2sy15hw2zw0bdynwnsa7hn4rly34hlxp06nwm5lssz8l2597"; depends=[]; }; - mcboost = derive2 { name="mcboost"; version="0.4.2"; sha256="0748av1dy6fag33slhi24km17qpi7y6cydl1vmdhxz96902lcr5r"; depends=[backports checkmate data_table glmnet mlr3 mlr3misc mlr3pipelines R6 rmarkdown rpart]; }; + mcboost = derive2 { name="mcboost"; version="0.4.3"; sha256="17zflvafz6w91lxbr8saasxp9bn18bla1jqg53fka2k8fnziz4g8"; depends=[backports checkmate data_table glmnet mlr3 mlr3misc mlr3pipelines R6 rmarkdown rpart]; }; mcca = derive2 { name="mcca"; version="0.7.0"; sha256="01nm0plgkik241qhd06v1vs84lf7agc0vkxa27cpr5qlfl4cm4zb"; depends=[caret e1071 MASS nnet pROC rgl rpart]; }; mccca = derive2 { name="mccca"; version="1.1.0.1"; sha256="1bmcncm53pbmc9dv61rwmp8xk9zf70ihw2gg6d0lmd1sgmf5i4hz"; depends=[ggplot2 magic RColorBrewer Rcpp RcppArmadillo stringr wordcloud]; }; mccf1 = derive2 { name="mccf1"; version="1.1"; sha256="023pvjfc1iv7hac3gz5rakg6ljs92j0qfm4givad5iiwv5n4k3zr"; depends=[ggplot2 ROCR]; }; @@ -13295,11 +13514,11 @@ in with self; { mcemGLM = derive2 { name="mcemGLM"; version="1.1.3"; sha256="0159zak179ziax5n1mmncidg50cjiqzfyc8j96585csah1dzx01d"; depends=[Rcpp RcppArmadillo trust]; }; mcen = derive2 { name="mcen"; version="1.2.1"; sha256="16f7860h6hbpnv1drk793mz3vwm9q4ar6xkag05z0p22p69mm4qy"; depends=[faraway flexclust glmnet Matrix]; }; mcga = derive2 { name="mcga"; version="3.0.7"; sha256="16vy5iy4k5i3mqchrrh8r229hyhwq4n2clvvp2mpz1iasvq7qz4f"; depends=[GA Rcpp]; }; - mcgf = derive2 { name="mcgf"; version="1.0.1"; sha256="0yk0981qkd0irgifqh9i6pkca4yp7hn35ckyiicq3khyyy3hmbw7"; depends=[MASS sp]; }; + mcgf = derive2 { name="mcgf"; version="1.1.0"; sha256="0lgvd9ibyg2rbccz9q5mmh0d85bli8qi7jwwh5kh5bbp754vss1f"; depends=[MASS sp]; }; mcgibbsit = derive2 { name="mcgibbsit"; version="1.2.2"; sha256="1ykg2g57zxaw2z9f7sgyd6kc6wx1lmad13asiy7q79ydzw8x8smw"; depends=[coda]; }; mclm = derive2 { name="mclm"; version="0.2.7"; sha256="1vpg6xsa8im60ld5mlm6yhf2prs6kmwn0sn12b9g8v27dgw3h0iq"; depends=[ca crayon dplyr Rcpp readr stringi stringr tibble tm xml2 yaml]; }; mclogit = derive2 { name="mclogit"; version="0.9.6"; sha256="0sbglgak6jhhpx65jnj59hbpvzs8qjsdjc4w02z0m5j9hrnmzp4s"; depends=[Matrix memisc]; }; - mclust = derive2 { name="mclust"; version="6.1"; sha256="0mchdxkc3y0v6dw8fzjnlqd6f3zrafm3xf1c53s6ps529b66kx2x"; depends=[]; }; + mclust = derive2 { name="mclust"; version="6.1.1"; sha256="0xb726ssy224mzfg37nq5hffkdwi2hwjp1y9gwngk9vfbs703myx"; depends=[]; }; mclustAddons = derive2 { name="mclustAddons"; version="0.8"; sha256="12wlj1rl5d384fydk27rpm62ghmwv3iax4nfsrcpczxrfk8zshc9"; depends=[foreach iterators mclust Rcpp RcppArmadillo]; }; mclustcomp = derive2 { name="mclustcomp"; version="0.3.3"; sha256="1kxrms77m7n9lv32771zvwg82xqh5kx8al6f0bknsj8idq8aqbh3"; depends=[Rcpp RcppArmadillo Rdpack]; }; mcmc = derive2 { name="mcmc"; version="0.9-8"; sha256="19vfh868lr4a491gc2x2b2xs83gldw294zbl4bqsgs2q9c6l81ka"; depends=[]; }; @@ -13318,8 +13537,10 @@ in with self; { mcparallelDo = derive2 { name="mcparallelDo"; version="1.1.0"; sha256="1ivh0d4f7ks6xwcjywk62h1zhr7h5bbhzpisky7973wi4g8vipbn"; depends=[checkmate R_utils R6]; }; mcprofile = derive2 { name="mcprofile"; version="1.0-1"; sha256="118n3pxzjm4j9y09d1n2hw7pm0b8b0m8mnm5v9kq76vignklh75l"; depends=[ggplot2 mvtnorm quadprog]; }; mcr = derive2 { name="mcr"; version="1.3.3"; sha256="1blaswdd1754fg6xdznkqq1igj6i6x8r3r9vdn3jpfq41qba5d40"; depends=[robslopes]; }; + mcrPioda = derive2 { name="mcrPioda"; version="1.3.3"; sha256="16n9dgmv3cjk4qy27n62n5hw43slp8hxkfdhbl60qxyrmw80lijn"; depends=[mixtools robslopes rrcov]; }; mcradds = derive2 { name="mcradds"; version="1.1.0"; sha256="11pa8y6q20rqsflxlsnyjq79l6xbfqy1739zvnvdl024mv0jvrw7"; depends=[boot checkmate DescTools dplyr formatters ggplot2 lifecycle magrittr mcr pROC purrr rlang tibble tidyr VCA]; }; mcreplicate = derive2 { name="mcreplicate"; version="0.1.2"; sha256="12pmfp75sc00cdrkx4xniq74qqx3y67qxwdrrbp2mf562pdn2gmn"; depends=[]; }; + mcstatsim = derive2 { name="mcstatsim"; version="0.1.0"; sha256="13ifkqx2c9v0pvkjg0r0sy07s2q7rp7wfx4q27vx4d7f7yk6va6r"; depends=[]; }; mctest = derive2 { name="mctest"; version="1.3.1"; sha256="1d248r9ifwl1xhvka6z69l943rvbq7s7ag6vqp9lljkcybvg75f2"; depends=[]; }; mctq = derive2 { name="mctq"; version="0.3.2"; sha256="1qp9jmpi6pbzn8jqg0i35zznc1sawi1jnky5cdf26hlyi2bjxy48"; depends=[checkmate cli dplyr ggplot2 hms lifecycle lubridate]; }; mcunit = derive2 { name="mcunit"; version="0.3.2"; sha256="16nnm50g87iaf058b1w5w5hphx99xplczndcbv1356f2gs2gfy6l"; depends=[Rdpack rlang simctest testthat]; }; @@ -13331,6 +13552,7 @@ in with self; { mda = derive2 { name="mda"; version="0.5-4"; sha256="0nd7p3yz7qdzka7jizymv5vhbhzb4v8bjpmmn5wa83vxh0l7ypzj"; depends=[class]; }; mdatools = derive2 { name="mdatools"; version="0.14.1"; sha256="1fbjrg0xwa9bgm8gkvd2xk17xax3yzf3zjzkh7c9627v8r6gnp8j"; depends=[Matrix]; }; mdbr = derive2 { name="mdbr"; version="0.2.1"; sha256="0mzd0qvwq3dvqdhp0dk7ad11m9bqh8jf3m7b8i6255s7c3rs3r0h"; depends=[readr]; }; + mddmaps = derive2 { name="mddmaps"; version="1.3.0"; sha256="1yxq4mzw67wfnbhfrllxpq0warpwfqsq6lfwnpr3cwbfqbil60p0"; depends=[httr progress readr stringr terra]; }; mde = derive2 { name="mde"; version="0.3.2"; sha256="121bzypndsx4abls1f7rjrvg98rqkb155vd5aiql8vi1lwgzy9jl"; depends=[dplyr tidyr]; }; mded = derive2 { name="mded"; version="0.1-2"; sha256="1j8fcz5yc70p9qd9l010xj1b625scdps8z1pqh75b45p2hiqbhlc"; depends=[]; }; mdendro = derive2 { name="mdendro"; version="2.2.1"; sha256="0am5kda7ydwiniqmypzmmqnaz4pkd9hp82vm0pdk3plak5b0dz6w"; depends=[Rcpp]; }; @@ -13354,13 +13576,14 @@ in with self; { measurements = derive2 { name="measurements"; version="1.5.1"; sha256="061xjwsacsk8vblva4s09xdrvd7kfgxydnpgr7imigyny01c5bh9"; depends=[]; }; measures = derive2 { name="measures"; version="0.3"; sha256="0325hhncg9fhq28cfl1hk6rhcmzzcngsmnkmbn9ri3b4hwqlafal"; depends=[]; }; meboot = derive2 { name="meboot"; version="1.4-9.4"; sha256="0akap3dl6nsfvh2f6d96ij6dvbblyrdnbqqh23ay8ah0r51zx9fs"; depends=[dynlm hdrcde nlme tdigest]; }; - meconetcomp = derive2 { name="meconetcomp"; version="0.4.1"; sha256="1nq65cb8hzm0wvlp2sm3xbl2s79n7l6fklww20xzyyx0z5z7f1j6"; depends=[dplyr ggplot2 ggpubr igraph magrittr microeco R6 reshape2]; }; + meconetcomp = derive2 { name="meconetcomp"; version="0.5.0"; sha256="0fxgm8bhjs1vn1l0vb7jx7gvg3w4k0bwng66sfp87l5b0z2j082q"; depends=[dplyr ggplot2 ggpubr igraph magrittr microeco R6 reshape2]; }; mecor = derive2 { name="mecor"; version="1.0.0"; sha256="0jcqf6d7x16hs0mrnkawlkl9idd2g5zb6l6mqdavkdx43fhk38j4"; depends=[lme4 lmerTest numDeriv]; }; mecoturn = derive2 { name="mecoturn"; version="0.3.0"; sha256="1qr7p50wplg3nwvaz595nxfrf5b1dc8l4y13jx65r8kvksqrl07g"; depends=[betareg ggplot2 ggpubr glmmTMB GUniFrac lmerTest magrittr microeco R6]; }; medExtractR = derive2 { name="medExtractR"; version="0.4.1"; sha256="0dn85yj61mz62bdxxvaxads6j9qf209sypmdvb9jx83c2sc7f4g6"; depends=[stringi stringr]; }; medScan = derive2 { name="medScan"; version="1.0.2"; sha256="17h97fnklci6prj62nzg49dcczns7s1yzi410jrdypsfhpz912kv"; depends=[fdrtool HDMT locfdr qqman qvalue]; }; mederrRank = derive2 { name="mederrRank"; version="0.1.0"; sha256="01dv7dabp2mvn99szaf8l44gbsy7zrllcm55zy6rbd0g9989ilnl"; depends=[BB numDeriv]; }; - medfate = derive2 { name="medfate"; version="3.2.0"; sha256="1g8911izvcicfc7jyrz5n77ra8zsmf6qj4811v3xc0pjck71a0yq"; depends=[ggplot2 meteoland Rcpp shiny]; }; + medfate = derive2 { name="medfate"; version="4.3.1"; sha256="0gs47ms58s86nclz1p1b12xi34b4p3q5py7f5kda4pffpbd9msh0"; depends=[ggplot2 meteoland Rcpp shiny]; }; + medfateland = derive2 { name="medfateland"; version="2.4.3"; sha256="0h24s5sg2nl83jqarb6m6sw5gi0d5x9284ysgl2p38637qrim55w"; depends=[cli dplyr ggplot2 httr jsonlite lifecycle medfate meteoland Rcpp rlang sf shiny stars terra tibble tidyr tidyterra]; }; medflex = derive2 { name="medflex"; version="0.6-10"; sha256="0cybshbk2qvh38n9sc6qf9jwjhzs4zz31awx3bbyqfwzjgzai2dx"; depends=[boot car Matrix multcomp sandwich]; }; mediacloudr = derive2 { name="mediacloudr"; version="0.1.0"; sha256="1r11mpz44msla71lqw45r9s8z7rwvbnqi026l0ljx6crby183h0w"; depends=[httr jsonlite rvest xml2]; }; mediateP = derive2 { name="mediateP"; version="0.2.0"; sha256="0qmams2hdvhq7abfidblgdz44nh5ja3byn233q3k61hvz7asxmc7"; depends=[boot]; }; @@ -13370,14 +13593,15 @@ in with self; { medicalrisk = derive2 { name="medicalrisk"; version="1.3"; sha256="12p3mjy6lphjajxz7is04cahp0598ip9ixfkdimvw1k8n5hs9mj0"; depends=[hash plyr reshape2]; }; medicare = derive2 { name="medicare"; version="0.2.1"; sha256="00a1gml2khzisdavnaip6ap4bw45b17nbl9cqb1mqrm4y0p9gm16"; depends=[]; }; meditations = derive2 { name="meditations"; version="1.0.1"; sha256="0wnx3zadpngfch0sb0ifqvsmzl613639f1yazwsgvhk29mycx4ss"; depends=[]; }; - medrxivr = derive2 { name="medrxivr"; version="0.0.5"; sha256="19gakl39n2jch84sv35jkk4g2c0k4h3ch3l3hz1w5p94mn2jlgqr"; depends=[bib2df curl data_table dplyr httr jsonlite lubridate progress purrr rlang stringr tibble vroom]; }; + medparser = derive2 { name="medparser"; version="0.1.0"; sha256="1xgylvgjcaxw49sy65chwr56iinsmfm0bj32mw1f4ssc6l0bm2ab"; depends=[]; }; meerva = derive2 { name="meerva"; version="0.2-2"; sha256="1q1q6ydn1zwv8vif14qs2zgijhrdrnpx1ibd5afp2lb6yn8qd61i"; depends=[dplyr ggplot2 matrixcalc mvtnorm survival tidyr]; }; meetupapi = derive2 { name="meetupapi"; version="0.1.0"; sha256="1iaxpfzgn478np9cjwz0zalfy1p7jwabnwpfv31svw052i8bs9yl"; depends=[dplyr httr magrittr purrr]; }; - mefa = derive2 { name="mefa"; version="3.2-8"; sha256="0agq3vk0dw7i6plz3killybsf8jb57fmlbh5zq1h8lgy1dqry55a"; depends=[]; }; - mefa4 = derive2 { name="mefa4"; version="0.3-9"; sha256="0g46z14r7d8wkyxsp58i6007r9jljf269snrbachamy2wlmpc1g1"; depends=[Matrix]; }; + mefa = derive2 { name="mefa"; version="3.2-9"; sha256="1rllkxp218qsa1c0aaa5zdky5bh2rzqbhdc2n14bmvv4jlgzrl8c"; depends=[]; }; + mefa4 = derive2 { name="mefa4"; version="0.3-11"; sha256="02npawccc316vwgmk0yna7wvlxzsbdishxzmfd4wgl7g218wjk3m"; depends=[Matrix]; }; + mefdind = derive2 { name="mefdind"; version="0.1"; sha256="1w52c5bq0jy38d8lkf9dglw3nr3c8dqvhdk4mmhc3q8r5x3a8cz0"; depends=[rvest stringr]; }; meifly = derive2 { name="meifly"; version="0.3.1"; sha256="0pgmxa4g16zhx3jx5g56h2s1f4cr4bkz3bp7404dm2729083rvjx"; depends=[leaps MASS plyr]; }; mekko = derive2 { name="mekko"; version="0.1.0"; sha256="09y50k4r4mnx351a5zhkqg9s2xyl3d149dhmfy2z6hzm5yg2ajyi"; depends=[ggplot2]; }; - melt = derive2 { name="melt"; version="1.11.2"; sha256="1dkdw3pjrwpl126kvhwani5k49gljm53pfij8bvlzbl4y44fks6d"; depends=[BH checkmate dqrng Rcpp RcppEigen]; }; + melt = derive2 { name="melt"; version="1.11.4"; sha256="19g5cd8fnvvqlvrvim47ra53svjk07cr4dmgn3h6x13wkv0grg46"; depends=[BH checkmate dqrng Rcpp RcppEigen]; }; meltr = derive2 { name="meltr"; version="1.0.2"; sha256="1h2a09n0az9s81m9n4a0h3dckxxgb9vpj03kal29ms0zwn525xpx"; depends=[cli cpp11 R6 rlang tibble]; }; meltt = derive2 { name="meltt"; version="0.4.3"; sha256="1j2iz05xr9ddj9pk2yw7j7kjfr9rxmxkk123c6336fqdm14wvd21"; depends=[dplyr ggplot2 leaflet plyr Rcpp RcppArmadillo reticulate shiny shinyjs tibble tidyr]; }; mem = derive2 { name="mem"; version="2.18"; sha256="1jz2zadwm9gvlgfr1dvi8m6p3zm3bjz4n4apkbpj8g594ghcbrpx"; depends=[boot dplyr EnvStats ggplot2 mclust purrr RColorBrewer RcppRoll sm tidyr]; }; @@ -13390,7 +13614,7 @@ in with self; { memo = derive2 { name="memo"; version="1.1.1"; sha256="1gqdb8y2khcnd1h2906kz1k7x58lw2ri48s9glfjq6whpj6bzpdk"; depends=[digest]; }; memochange = derive2 { name="memochange"; version="1.1.1"; sha256="144134kpchb7ps8b2g7pyga5add0iqphzcwygf11aybmbzmp90x7"; depends=[forecast fracdiff longmemo LongMemoryTS sandwich strucchange urca]; }; memofunc = derive2 { name="memofunc"; version="1.0.2"; sha256="02y32mnwafqnsvs3vy4g8v0jmdvnx935dqavy3q1f2n8c76p0bk9"; depends=[digest magrittr uuid]; }; - memoiR = derive2 { name="memoiR"; version="1.2-7"; sha256="132pf6phcrwkwky6pr7k5g5zbh2qx1vp420j38blilh2phvgdhl6"; depends=[bookdown distill rmarkdown rmdformats usethis]; }; + memoiR = derive2 { name="memoiR"; version="1.2-9"; sha256="0asaw2xfnbn0g37y0h4lz223hh4xkaa6z8679mbvp4pk7p86b95s"; depends=[bookdown distill rmarkdown rmdformats usethis]; }; memoise = derive2 { name="memoise"; version="2.0.1"; sha256="1srdzv2bp0splislrabmf1sfbqfi3hn189nq7kxhgjn8k3p38l7q"; depends=[cachem rlang]; }; memor = derive2 { name="memor"; version="0.2.3"; sha256="1b3rjh121in7gi6khbhh2d1r0998a24ifcg6hpv8cdksl6lhm330"; depends=[knitr rmarkdown yaml]; }; memoria = derive2 { name="memoria"; version="1.0.0"; sha256="05nx6xkgf1mkn1ajjizwp66xhn7ddbvgdnmkdbcl4s7sq456vczw"; depends=[cowplot ggplot2 HH ranger stringr tidyr viridis viridisLite zoo]; }; @@ -13406,7 +13630,7 @@ in with self; { messaging = derive2 { name="messaging"; version="0.1.0"; sha256="0q19cqp1zgh0yhk1ql0jqf414bhx6jwhkairq6wx2cmkli2g7k1y"; depends=[dplyr glue magrittr rlang stringr]; }; messi = derive2 { name="messi"; version="0.1.1"; sha256="1z3fjxfmvxc9zr98zmkd84rj27iabjmw71hwqgnbjwcw5mnw2b5h"; depends=[ggplot2 MASS patchwork progress]; }; messy_cats = derive2 { name="messy.cats"; version="1.0"; sha256="0znjp1wcrkpgm778z5iqw91bnk8vv0x04dpng8pcmh0igsmc3j68"; depends=[dplyr gt rapportools stringdist stringr varhandle]; }; - messydates = derive2 { name="messydates"; version="0.3.5"; sha256="1iqh72avq8pvirzpg227iyhhd413g2d07pa8blkqx5d4wdqnlwna"; depends=[dplyr lubridate purrr stringr tibble]; }; + messydates = derive2 { name="messydates"; version="0.4.1"; sha256="1zljfs9igcm95s8dmiqn18b4dhpzgrll6zcfbwwsi35kl03b7655"; depends=[dplyr lubridate purrr stringr tibble]; }; metR = derive2 { name="metR"; version="0.15.0"; sha256="17qhx6jx8h9dxfzxgg4nx3nx4xjnjpz9r0cix0qqbgngri55lap0"; depends=[checkmate data_table digest Formula formula_tools ggplot2 gtable isoband lubridate memoise plyr purrr scales sf stringr]; }; metRology = derive2 { name="metRology"; version="0.9-28-1"; sha256="1syjwblyd18myxrs0hx4m91fgb6zs3r4g7w701j2f2pw6j9mvz0y"; depends=[MASS numDeriv robustbase]; }; meta = derive2 { name="meta"; version="7.0-0"; sha256="0zfyjyaabwgzlnws8ny2r7f1qr6h827kba4fddv44aqd9z4xksnq"; depends=[CompQuadForm dplyr lme4 magrittr metadat metafor purrr readr stringr xml2]; }; @@ -13424,7 +13648,7 @@ in with self; { metaRNASeq = derive2 { name="metaRNASeq"; version="1.0.7"; sha256="1c9qxac7439wxnmr1jah37pmski5wyap1vd4nb8gvq4indbdiaz2"; depends=[]; }; metaRange = derive2 { name="metaRange"; version="1.1.4"; sha256="05x7rs4ah42326xmpm4spm2ysmlw2c6cs1fxgngy9ndz6k2dmb64"; depends=[checkmate R6 Rcpp RcppArmadillo terra]; }; metaSDTreg = derive2 { name="metaSDTreg"; version="0.2.2"; sha256="00lwfx083a449yppnh3zai2hyzc0g53v8nr8r4ippdv088612iq6"; depends=[Matrix maxLik ordinal truncnorm]; }; - metaSEM = derive2 { name="metaSEM"; version="1.3.1"; sha256="0m3nc5kazi6pa7aih56g2022kklf56yk4f7lv0hlmjszhc6rhpww"; depends=[ellipse lavaan MASS Matrix mvtnorm numDeriv OpenMx]; }; + metaSEM = derive2 { name="metaSEM"; version="1.4.0"; sha256="1gkgcczdm14cz2z4ys9qxy068g1ma6sik5ycas3z6m5rgwbd2amy"; depends=[ellipse lavaan MASS Matrix mvtnorm numDeriv OpenMx]; }; metaSurvival = derive2 { name="metaSurvival"; version="0.1.0"; sha256="05f103fi287y64gys73a55snw54bnph69q8dykfii10dykd44g0y"; depends=[mvtnorm survival]; }; metabias = derive2 { name="metabias"; version="0.1.1"; sha256="0xgckbyxjb6s43b3z48cxb2jbyd7jaw17x0w3wiafqjbz9ahzdmk"; depends=[Rdpack]; }; metaboData = derive2 { name="metaboData"; version="0.6.3"; sha256="0a8jz7q0a5dri5p2qyw0ah0j4w0xjyfj6gkh2gcsazac1d5fl02i"; depends=[dplyr fs magrittr piggyback purrr readr rlang stringr tibble yaml]; }; @@ -13434,12 +13658,12 @@ in with self; { metacoder = derive2 { name="metacoder"; version="0.3.7"; sha256="0f7y7yzkqblqal71lp2kip8lzismdzlj3cpw0mb15hvca9dz12x4"; depends=[ape cowplot crayon dplyr GA ggfittext ggplot2 igraph lazyeval magrittr R6 Rcpp RCurl readr rlang seqinr stringr taxize tibble vegan]; }; metacom = derive2 { name="metacom"; version="1.5.3"; sha256="0c0gzn28cl2sl52wx2n36jm9c18d9s3yqjyx88kgbmd9069z1nvk"; depends=[vegan]; }; metaconfoundr = derive2 { name="metaconfoundr"; version="0.1.2"; sha256="0aiz10wjb24p52hx5srmws7myncjdvhd8kxbnxyaxg31wgxl3183"; depends=[dplyr forcats ggplot2 magrittr purrr rlang shiny stringr tibble tidyr tidyselect]; }; - metacore = derive2 { name="metacore"; version="0.1.2"; sha256="0pc0z0i4psm00pack5rx4pmg0cq9x0yiv8xwmnkn80rl3yhagq98"; depends=[dplyr magrittr purrr R6 readxl rlang stringr tibble tidyr tidyselect xml2]; }; + metacore = derive2 { name="metacore"; version="0.1.3"; sha256="06ba9p1by6hfagj0s43b6dwwfci5fczl2fr7kw3cchqsr90y3vfr"; depends=[dplyr magrittr purrr R6 readxl rlang stringr tibble tidyr tidyselect xml2]; }; metadat = derive2 { name="metadat"; version="1.2-0"; sha256="1f7mb3pw5d0akr09jjva06ay223izhpzbr21bapnw99x1kiybk7h"; depends=[mathjaxr]; }; metadynminer = derive2 { name="metadynminer"; version="0.1.7"; sha256="0ch86qqs3872d28c8wrs24ryg2xahqsmndmzjc3z6qznkrq1adzh"; depends=[Rcpp]; }; metadynminer3d = derive2 { name="metadynminer3d"; version="0.0.2"; sha256="1y1csfp57qrv394hj96yr5v3brxw7v0a07k2pg7ypw08gshvgqjm"; depends=[metadynminer misc3d Rcpp rgl]; }; metafolio = derive2 { name="metafolio"; version="0.1.2"; sha256="11y2igvwwkr4dj7v8ip66w1psi9wzb8q3sy018lhaxb42s1lspbh"; depends=[colorspace MASS plyr Rcpp RcppArmadillo]; }; - metafor = derive2 { name="metafor"; version="4.4-0"; sha256="1m4762fn4zbjpnx9vxyy9gvzyzn3avxnqpzmbj45w8241g3s1b32"; depends=[mathjaxr Matrix metadat nlme numDeriv pbapply]; }; + metafor = derive2 { name="metafor"; version="4.6-0"; sha256="0rl6w4j1fqvr7vn0dbzmir28xbi2wdn9m3lrxwjvvf47pp1lqd07"; depends=[mathjaxr Matrix metadat nlme numDeriv pbapply]; }; metaforest = derive2 { name="metaforest"; version="0.1.4"; sha256="1b578s08621x5g2sqgi88sdlknq3zaql5xbhdggzml8c0n7lhbc1"; depends=[data_table ggplot2 gtable metafor ranger]; }; metafuse = derive2 { name="metafuse"; version="2.0-1"; sha256="1zdw22f5kzvy2xr3c2csy873hcags60as567brc2sw17d0apfy8j"; depends=[evd glmnet MASS Matrix]; }; metagam = derive2 { name="metagam"; version="0.4.0"; sha256="1kpxf2jxbx13if3ir9iqsqbdg6gg0l9pa3qnxmff4w5dd59by5kd"; depends=[ggplot2 metafor mgcv rlang]; }; @@ -13449,8 +13673,8 @@ in with self; { metainc = derive2 { name="metainc"; version="0.2-0"; sha256="12kli07sh2b2ynpaasqmx2vfxnvv50brfcqnrgsk9abapy8ckfag"; depends=[confintr ggplot2 meta]; }; metajam = derive2 { name="metajam"; version="0.2.3"; sha256="0ryzsnwfhapsyz40ckjj6gn2chf37m62z3l7xv703878bghpdqwc"; depends=[dataone dplyr EML emld lubridate purrr readr rlang stringr tibble tidyr]; }; metalite = derive2 { name="metalite"; version="0.1.3"; sha256="1pai4a5mnba80cyvhpdxhk0hwzhmw2xa23px1x7154ddl6rnykvg"; depends=[glue rlang]; }; - metalite_ae = derive2 { name="metalite.ae"; version="0.1.1"; sha256="0z33yj8v67mkjg47zd627mnp0p1b2gnlvj7gf0d7np1j38572j1s"; depends=[dplyr glue metalite r2rtf tidyr]; }; - metalite_table1 = derive2 { name="metalite.table1"; version="0.3.0"; sha256="042y400x994qhwidw5nadxf8mqd6kkrl081bzi6v1bqa17y8qw6c"; depends=[htmltools jsonlite metalite r2rtf reactable]; }; + metalite_ae = derive2 { name="metalite.ae"; version="0.1.2"; sha256="0vf8v6nf4f7lagfzs4dr6q5gz2dh18wal74xmlfaw7cmw42z8nsh"; depends=[glue metalite r2rtf]; }; + metalite_table1 = derive2 { name="metalite.table1"; version="0.4.0"; sha256="1vg6mprn2c633qr5v1rfgbg5bwc621chy69c8k1yz700rhzapcfa"; depends=[htmltools jsonlite metalite r2rtf reactable]; }; metamedian = derive2 { name="metamedian"; version="1.1.1"; sha256="17p8npnaddsdikii9c8zhvbwhkpwgncksipzsslrs7d4pz6wlfvf"; depends=[estmeansd Hmisc metaBLUE metafor]; }; metamer = derive2 { name="metamer"; version="0.3.0"; sha256="0b427cbasy1irks9jy5kjg3ay5xa01dcalhl8g14smhkdv5054wz"; depends=[FNN progress]; }; metamicrobiomeR = derive2 { name="metamicrobiomeR"; version="1.2"; sha256="0fgdjy2s47pqmb9x79a4sf0kn4hbc49rd41jnzw0d3ll1l9kwy7f"; depends=[compositions dplyr gamlss gdata ggplot2 gridExtra lme4 lmerTest matrixStats meta plyr tidyr zCompositions]; }; @@ -13458,7 +13682,7 @@ in with self; { metan = derive2 { name="metan"; version="1.18.0"; sha256="0m7czvd7djv80c6kly8ckgs9m5ld0rqnd92y76n181d2xk9l6ypc"; depends=[dplyr GGally ggforce ggplot2 ggrepel lme4 lmerTest magrittr mathjaxr patchwork purrr rlang tibble tidyr tidyselect]; }; metanetwork = derive2 { name="metanetwork"; version="0.7.0"; sha256="0rlnalmfmiih154zq6rk4sq12y7nr8fn1ws8mrlryy04gznz6igw"; depends=[dplyr GGally ggimage ggplot2 igraph intergraph magrittr Matrix network RColorBrewer rlang sna visNetwork]; }; metansue = derive2 { name="metansue"; version="2.5"; sha256="098f3jfqxraf86p6ciqpryqs1vwbhsmy3wngqj50d5ndf302qxmc"; depends=[]; }; - metap = derive2 { name="metap"; version="1.9"; sha256="1w4mv7vb94d4pkllvabz9az8sbrbfhigxw4is3j0jzi1pnlyc8kg"; depends=[lattice mathjaxr mutoss qqconf Rdpack TFisher]; }; + metap = derive2 { name="metap"; version="1.10"; sha256="18l86026g5g0pdihw41h7yck1ad5k43bb7as5qih2k5xkr680mzx"; depends=[lattice mathjaxr mutoss qqconf Rdpack TFisher]; }; metapack = derive2 { name="metapack"; version="0.3"; sha256="17j3xivpyq17is5vzmca9zck6dryzfnrzddvppik4ml3xq122br9"; depends=[BH Formula ggplot2 gridExtra Rcpp RcppArmadillo RcppProgress]; }; metaplot = derive2 { name="metaplot"; version="0.8.4"; sha256="1ywr26sqbj0gqcyn4nqj0xi9018dzxwvm663xdrm31wnchh8iivg"; depends=[dplyr encode ggplot2 gridExtra gtable lattice magrittr rlang scales tidyr]; }; metaplus = derive2 { name="metaplus"; version="1.0-4"; sha256="1lrlw5h3fgcrp0cdawxala36m8mpljbmp20fhf4sc0qj51h2ccs4"; depends=[bbmle boot doParallel doRNG fastGHQuad foreach lme4 MASS metafor numDeriv Rfast]; }; @@ -13476,7 +13700,7 @@ in with self; { metaviz = derive2 { name="metaviz"; version="0.3.1"; sha256="0jvv49rw66v7saj2y1q88rp6fyzq7473af5d3k77ymvjbpqyrbyz"; depends=[dplyr ggplot2 ggpubr gridExtra metafor nullabor RColorBrewer]; }; metawho = derive2 { name="metawho"; version="0.2.0"; sha256="1mflkrlnb1wk9vbbj621cy64s78q677d8fcnsi1ybh49k7sqmw20"; depends=[dplyr forestmodel magrittr metafor purrr rlang]; }; meteR = derive2 { name="meteR"; version="1.2"; sha256="02637d3dnfq0jv9d74y99x7ms89y3jcmkpazc44g44sa7jx4i510"; depends=[distr nleqslv]; }; - meteo = derive2 { name="meteo"; version="2.0-2"; sha256="18aiy133527cxa3qj2mjwik6d7w6kgs7qmb5zywsbvb2bc3hmn5v"; depends=[caret CAST data_table DescTools doParallel dplyr foreach gstat nabor plyr ranger raster sf sftime snowfall sp spacetime terra units]; }; + meteo = derive2 { name="meteo"; version="2.0-3"; sha256="1l3656yh0ggjd7kyvkknn6a6ad1z45qpxrndgkp52cph2607n324"; depends=[caret CAST data_table DescTools doParallel dplyr foreach gstat jsonlite nabor plyr ranger raster sf sftime snowfall sp spacetime terra units]; }; meteoEVT = derive2 { name="meteoEVT"; version="0.1.0"; sha256="1i3zi1cgzv6lymmd7m92rmhmnxmdvi5nl367hnfbgxzy44van8l8"; depends=[ncdf4 purrr]; }; meteoForecast = derive2 { name="meteoForecast"; version="0.56"; sha256="0nbjl4x06ni6jk8ji6n3cgd07iszw87lwg52rp8avvsz3kh19p5c"; depends=[ncdf4 raster sp XML zoo]; }; meteoland = derive2 { name="meteoland"; version="2.2.1"; sha256="1543ka7yd7v1yca7my1114mb5j6wmn7dsj3kcr7gj8z99v8mxadk"; depends=[assertthat cli cubelyr dplyr lifecycle lubridate ncdfgeom ncmeta purrr Rcpp rlang sf stars tidyr units]; }; @@ -13488,22 +13712,22 @@ in with self; { metools = derive2 { name="metools"; version="1.0.0"; sha256="05l49ifx2nnlbdxh2qhdb0islf95fc67720rm5in7mrlida4khnq"; depends=[ggplot2 lubridate scales stringr tibble tidyr]; }; metrica = derive2 { name="metrica"; version="2.0.3"; sha256="10pkd29vcrm74fxf4i5bmkrj6528vfzipf53nfdpic9bavk2s2i7"; depends=[DBI dplyr energy ggplot2 ggpp minerva rlang RSQLite tidyr]; }; metricminer = derive2 { name="metricminer"; version="0.5.1"; sha256="156fzmcwgabi95qdjy7pq415l505y5mzcc99l77ykbf56w9fa9qs"; depends=[assertthat dplyr getPass gh googledrive googlesheets4 httr janitor jsonlite lubridate openssl purrr stringr tidyr]; }; - metricsgraphics = derive2 { name="metricsgraphics"; version="0.9.0"; sha256="1zbx82b34y0rr4w7rzvyc1nzk95w6cdkg0j1kkshbmkvplq6v9i4"; depends=[htmltools htmlwidgets magrittr]; }; metrix = derive2 { name="metrix"; version="1.1.0"; sha256="0ixp868pag05a6h4l8q4x55w0dg4xki4q6klfi9dzx82knzb7s9l"; depends=[Matrix stringr vegan]; }; metro = derive2 { name="metro"; version="0.9.3"; sha256="1dm759z7rb86fnqmrhzbnljhq9v60w8gspy09zkzjdfjzn06q17d"; depends=[geodist hms httr jsonlite tibble]; }; metropolis = derive2 { name="metropolis"; version="0.1.8"; sha256="031fcy0v13bvy7gg26988fvpqdsfndx2rynkhb1jvirnrf0fngy4"; depends=[coda]; }; mets = derive2 { name="mets"; version="1.3.4"; sha256="0yisa6v0apxxw5ycjhc3hcghlmvzzaq431z8nzsrw5jc2g13c0ca"; depends=[lava mvtnorm numDeriv Rcpp RcppArmadillo survival timereg]; }; metsyn = derive2 { name="metsyn"; version="0.1.2"; sha256="0iwp0nz07yd33qd93fjblmvik1l1xkv6rkccn3054zs2bkrzjq4f"; depends=[foreach readr stringr tibble]; }; mev = derive2 { name="mev"; version="1.16"; sha256="0kavj6mzzsjxkac2q0fxyhnzwy51pwld4r77fg024ggliiswjmms"; depends=[alabama nleqslv Rcpp RcppArmadillo Rsolnp]; }; + mevr = derive2 { name="mevr"; version="1.0.0"; sha256="0klhmlhn2v4ncsrwvpzhxxn8bbrjn5qjzi6rlxrxmp9yfk5wnxhy"; depends=[bamlss doParallel dplyr EnvStats foreach mgcv rlang]; }; mewAvg = derive2 { name="mewAvg"; version="0.3.1"; sha256="1pnjzfq4rdjjlqp1mxxlpkhkfgq1nym8pgaqrvpm76zw4xnx7p7m"; depends=[]; }; mexhaz = derive2 { name="mexhaz"; version="2.5"; sha256="0lpymgfknr8szpxf7g7qmvdklsclfsmvjjws7cdpxsiv6hv8y3p2"; depends=[lamW MASS numDeriv statmod survival]; }; mexicolors = derive2 { name="mexicolors"; version="0.2.0"; sha256="0vbhwaq19hqd63qjybssgqxkawjr6vnar6k0nrb583hh1q9hjyg2"; depends=[]; }; mfGARCH = derive2 { name="mfGARCH"; version="0.2.1"; sha256="1pcabijwhdxhdlrdjvi2zl8la939igsdy3j1yv0ic8wvkpw1sh4x"; depends=[maxLik numDeriv Rcpp zoo]; }; mfaces = derive2 { name="mfaces"; version="0.1-4"; sha256="0svvnpka2y1p21gvdyc7csw6m0g3kziszw2ll9bq5gpcnl69qk4n"; depends=[face Matrix matrixcalc mgcv]; }; mfdb = derive2 { name="mfdb"; version="7.3-1"; sha256="1l7bvacmvh53rq91jqdb6zqjn3974sy838zfvgfb6nam54r080y4"; depends=[DBI duckdb getPass logging rlang RPostgres RSQLite]; }; - mfp = derive2 { name="mfp"; version="1.5.4"; sha256="0a4gfip5y42hn0pk8y8zmvlj65nr5a2ni77z14m1xj1azb9222by"; depends=[numDeriv survival]; }; + mfp = derive2 { name="mfp"; version="1.5.4.1"; sha256="17sww972ymnddbi54575hdalbshfq81m849795pmi38j3mrhz25m"; depends=[numDeriv survival]; }; mfp2 = derive2 { name="mfp2"; version="1.0.0"; sha256="03xv7zjdcsnyrawwpjgfw5g59h7miwh68wkmbvfkd8wxnfcdmmmv"; depends=[ggplot2 survival]; }; - mfpp = derive2 { name="mfpp"; version="0.0.5"; sha256="0i8yp3rmhqy8w6xvdlkg6k8vm3hdihsqrrc94sbx1c1nsd5p2m95"; depends=[genalg ggplot2 igraph nsga2R pracma reshape2 Rfast]; }; + mfpp = derive2 { name="mfpp"; version="0.0.7"; sha256="1z250grk06cmclyz4v3qnxdy43dm5vcrcq1rglpps3cfrg09i2g1"; depends=[genalg ggplot2 igraph nsga2R pracma reshape2 Rfast]; }; mfx = derive2 { name="mfx"; version="1.2-2"; sha256="04pwp67i4sn4rf497pgy6qifwvrcmwyxn8x5sn96fy8qyrdzjfhj"; depends=[betareg lmtest MASS sandwich]; }; mgarchBEKK = derive2 { name="mgarchBEKK"; version="0.0.5"; sha256="0i5f8xghdch9d1cvfgiq2pscpq53ms7ik7jk16gss8i0cx2d3m94"; depends=[mvtnorm tseries]; }; mgc = derive2 { name="mgc"; version="2.0.2"; sha256="1l9qs4nz1rn56qp569nh26yz3c7i4zh3r43c209zh7kvizpagx0i"; depends=[abind boot energy MASS raster]; }; @@ -13517,13 +13741,13 @@ in with self; { mgpStreamingSDK = derive2 { name="mgpStreamingSDK"; version="0.2.0"; sha256="1fgcca0jca0jw6gpcqjb5wrcl9x3r2hfhf1xwiwv2w1m7bhc3mkp"; depends=[R6 reticulate]; }; mgss = derive2 { name="mgss"; version="1.2"; sha256="0czzr5hc9sr8yc362q9xag3vphwk1gfahczpya2mh1l6fsa74fbn"; depends=[combinat Matrix Rcpp statmod]; }; mgsub = derive2 { name="mgsub"; version="1.7.3"; sha256="1mci6x65h94qiz9cwikx2inbrwkykv43zbs8abfbx416zrh2bbn9"; depends=[]; }; - mgwnbr = derive2 { name="mgwnbr"; version="0.1.0"; sha256="0c9y3jfg1s5cvpw6yjjcq80shdx1khx799qpcvba534vgz3mkh49"; depends=[sp]; }; + mgwnbr = derive2 { name="mgwnbr"; version="0.2.0"; sha256="0vmpvfnnq1ylsivizz888akaq74ybz890nspj40zx5wr7dv2rkz7"; depends=[sp]; }; + mgwrhw = derive2 { name="mgwrhw"; version="1.1.1.5"; sha256="0nk07rl4g4l9ng4fq9xh1smxz705akn25svadjwn17wvm9wjg7dk"; depends=[dplyr ggplot2 psych sf spgwr tidyr]; }; mgwrsar = derive2 { name="mgwrsar"; version="1.0.5"; sha256="0xhxx1x625igm54n5wpl4aavcqg9dx9nmazr330538p334df3z8h"; depends=[caret doParallel dplyr foreach ggplot2 gridExtra htmltools knitr leaflet mapview Matrix mboost mgcv microbenchmark nabor Rcpp RcppEigen rlang sf sp spgwr]; }; mhazard = derive2 { name="mhazard"; version="0.2.3"; sha256="030r0l11qplmypwfk45mj31gba96xda7nxzgiyjsgrb20jmcsja5"; depends=[boot plot3D Rcpp RcppArmadillo rootSolve survival]; }; mhcnuggetsr = derive2 { name="mhcnuggetsr"; version="1.1"; sha256="0fq0niigf4lb6jqcy0w4mkfy65pxrw4brf3pg2nvmgnv3c91lgsb"; depends=[rappdirs reticulate stringr tibble]; }; mhsmm = derive2 { name="mhsmm"; version="0.4.21"; sha256="1fibgpl65bl3rwlf9dhlams3gxbjqgwcd26gb0flp4wln6pl8d99"; depends=[mvtnorm]; }; mhtboot = derive2 { name="mhtboot"; version="1.3.3"; sha256="1z0p8ny9lpnrshgas7cad2lv7j0blw0n6ihiimw600n70h73jwrn"; depends=[ggplot2 reshape2]; }; - mhurdle = derive2 { name="mhurdle"; version="1.3-0"; sha256="1in07zk29z5fhrg75wl1fwbrsny4ihjnrqyh2kz1bd448p10f295"; depends=[Formula generics margins maxLik numDeriv prediction Rdpack survival truncreg]; }; mi = derive2 { name="mi"; version="1.1"; sha256="11f75ivnax6p48mp2pasprws488cm2daym87sw2mcrywvf89fyjd"; depends=[arm Matrix]; }; mi4p = derive2 { name="mi4p"; version="1.1"; sha256="1fl5vbykgw3wihv1gqbnqrfjiyng8mzfdg469x6y12mxdrgl4myj"; depends=[emmeans foreach imp4p impute limma mice stringr]; }; miCoPTCM = derive2 { name="miCoPTCM"; version="1.1"; sha256="0bmb06rb53fq8ylcvz693akmz7nkjj50c6ypxsjbfp4crllpi5v9"; depends=[distr MASS nleqslv survival]; }; @@ -13555,17 +13779,18 @@ in with self; { microPop = derive2 { name="microPop"; version="1.6"; sha256="0if218csmnp5vcbcgr9zjk8d7y17al04rpfhjvp76v03xvwjizp5"; depends=[deSolve testthat visNetwork]; }; microbats = derive2 { name="microbats"; version="0.1-1"; sha256="1mahvblaiwg1xk2s34wd1ic8ddc9lh6g0azik2pd97bsf0krkyw8"; depends=[]; }; microbenchmark = derive2 { name="microbenchmark"; version="1.4.10"; sha256="10dlp4295jb5l7lhz80f4mkz3jccv02v277z666wx3bhfaz43k04"; depends=[]; }; - microbial = derive2 { name="microbial"; version="0.0.20"; sha256="1y5vhh4sq22c4wxb3c9rzj53niacn97vfg0484d9wkcjb179lc79"; depends=[broom DESeq2 dplyr edgeR ggplot2 ggpubr magrittr phangorn phyloseq plyr randomForest rlang rstatix S4Vectors SummarizedExperiment testthat tidyr vegan]; }; + microbial = derive2 { name="microbial"; version="0.0.21"; sha256="1d2sr4wwjlxcaxqr57gzf8m2pydgx4kp3h8mgyxzcm4s00i8m5bc"; depends=[broom DESeq2 dplyr edgeR ggplot2 ggpubr magrittr phangorn phyloseq plyr randomForest rlang rstatix S4Vectors SummarizedExperiment tidyr vegan]; }; microclass = derive2 { name="microclass"; version="1.2"; sha256="0q6mn1hbi6nk29x2x5a1wcdqp06mjggbrpglk5i8pp4gkqlzhl8q"; depends=[dplyr microcontax microseq Rcpp RcppEigen RcppParallel rlang stringr tibble]; }; microcontax = derive2 { name="microcontax"; version="1.2"; sha256="004g979hyg0asbah7hxr445fidil4ibw1b8pqpjdbgmpm1qgvw7y"; depends=[microseq]; }; - microeco = derive2 { name="microeco"; version="1.5.0"; sha256="0ksrw3vfaj7w19vaf16hc4gg63cailqy1fzjqi8f6m81bzhrydnk"; depends=[ape data_table dplyr ggplot2 igraph magrittr R6 RColorBrewer reshape2 rlang scales tibble vegan]; }; + microdiluteR = derive2 { name="microdiluteR"; version="1.0.1"; sha256="1x039ja5bwshblc4zr5pnj1mn7jn1x92fddjcjd08y75sgcbi5ng"; depends=[dplyr ggh4x ggplot2 ggthemes magrittr purrr rlang rstatix stringr tibble vctrs]; }; + microeco = derive2 { name="microeco"; version="1.7.1"; sha256="1w01k7vd1s5w3xkjxkz5gwbql92k3r2nvxzhxhbpkj9amz1rb5wl"; depends=[ape data_table dplyr ggplot2 igraph magrittr R6 RColorBrewer reshape2 rlang scales tibble vegan]; }; microhaplot = derive2 { name="microhaplot"; version="1.0.1"; sha256="0g15g7d19yz11nn2g0h8h2m8k1cvmpryz72pnalgv5yi58md5l5i"; depends=[dplyr DT ggiraph ggplot2 gtools magrittr scales shiny shinyBS shinyWidgets tidyr]; }; micromap = derive2 { name="micromap"; version="1.9.8"; sha256="129q0a6jywxmhgddyacjl150zfxr04qdv17pqngp4xl0rd9r5zcz"; depends=[ggplot2 RColorBrewer sf sp]; }; - micromapST = derive2 { name="micromapST"; version="3.0.2"; sha256="1r7lkwhqmcby1wjva9fij7b62vk4aqrwn4maj1zfpcm9f9s90jvp"; depends=[labeling RColorBrewer readxl rmapshaper sf spdep stringr writexl]; }; + micromapST = derive2 { name="micromapST"; version="3.0.3"; sha256="0zg0wgqlk9z9k3qhcnd8y8swa7p3g8q30fvw3g0n71dd4vqxzdcl"; depends=[labeling RColorBrewer readxl rmapshaper sf spdep stringr writexl]; }; micromodal = derive2 { name="micromodal"; version="1.0.0"; sha256="0qf5ckfcnkviilb2la8la9sjfcir7c79v4981jrpsxfy9n6y39vm"; depends=[htmltools]; }; + micronutr = derive2 { name="micronutr"; version="0.1.1"; sha256="0gi2d8xkl1df5sncp4ndljfpd2wgkv9d634k3rk1cw4if0dp955c"; depends=[]; }; micropan = derive2 { name="micropan"; version="2.1"; sha256="16zs6sqi2c5lwzhd5gbyddp8q4gx5r5sg0pbpk7924i8x4hh081h"; depends=[dplyr igraph microseq rlang stringr tibble]; }; microplot = derive2 { name="microplot"; version="1.0-45"; sha256="0qprvn5zv9ai30lhd8qykffc5f8va886kc5qka34940lin63v389"; depends=[cowplot flextable ggplot2 HH Hmisc htmltools lattice officer]; }; - microsamplingDesign = derive2 { name="microsamplingDesign"; version="1.0.8"; sha256="0swaqvzqbmlk9j2gr8z7x7xrkr38xndprg9k66whzcigxfh8nhiz"; depends=[abind deSolve devtools ggplot2 gridExtra gtools knitr MASS matrixcalc matrixStats plyr Rcpp RcppArmadillo readr reshape2 shiny stringr]; }; microseq = derive2 { name="microseq"; version="2.1.6"; sha256="1xa8r908jic06kv1qjmdidh3zzslbimjyhsy6v27xqzrh45svq4c"; depends=[data_table dplyr Rcpp rlang stringr tibble]; }; microsimulation = derive2 { name="microsimulation"; version="1.4.3"; sha256="0vn7lx6qa0dqd7h208s36jwcxswmnhdp4kazkavagd61sqr2gah2"; depends=[ascii Rcpp RcppArmadillo survival]; }; microsynth = derive2 { name="microsynth"; version="2.0.44"; sha256="1a8xh4aqv0177p9vp05i6c881k4pkyyha7izbq3j3ssyb9id7yy6"; depends=[kernlab pracma survey]; }; @@ -13576,9 +13801,10 @@ in with self; { midasml = derive2 { name="midasml"; version="0.1.10"; sha256="0jhrifvqcis2lj59vybgkzgmdmxwfqmsbxijwcz8hsprshr69xl9"; depends=[doParallel doRNG foreach lubridate Matrix randtoolbox snow]; }; midasr = derive2 { name="midasr"; version="0.8"; sha256="0mzyxf8q2wmbsiczkhhgigy7jmi8zr4w4a83f97va35vfhxi217k"; depends=[forecast Formula MASS Matrix numDeriv optimx quantreg sandwich texreg zoo]; }; midastouch = derive2 { name="midastouch"; version="1.3"; sha256="1pjzcf0hjfhr5p0la8pz1njw7bhfrcrzpqfsdqk2z5c6dbh4awzq"; depends=[]; }; - midfieldr = derive2 { name="midfieldr"; version="1.0.1"; sha256="1ckvwmlnpcvxavikhwjw029xh4w9153gkfwabilxzw58l8nwlry5"; depends=[checkmate data_table wrapr]; }; + midfieldr = derive2 { name="midfieldr"; version="1.0.2"; sha256="18zh3nm8k13hzaa0rih4f76q7zj16qww2aaamifhhfimgpn9iib5"; depends=[checkmate data_table wrapr]; }; + midi = derive2 { name="midi"; version="0.1.0"; sha256="06dc0lazi7pkdm66isaqa9igfrl8dq4klpg06aggmilgay09fi5s"; depends=[cli ggplot2 plotly purrr R6 rlang withr]; }; midrangeMCP = derive2 { name="midrangeMCP"; version="3.1.1"; sha256="1yfwyglyxxk4i914m8n148cjydlcg7r16zl8acb1w8h963svirk9"; depends=[SMR writexl xtable]; }; - miesmuschel = derive2 { name="miesmuschel"; version="0.0.3"; sha256="0gqdq1qsai0rql8l1s7qqdijxhjc48bkkx16c1k36c3skf2lam52"; depends=[bbotk checkmate data_table lgr matrixStats mlr3misc paradox R6]; }; + miesmuschel = derive2 { name="miesmuschel"; version="0.0.4-1"; sha256="1n2svgi926m8i8d1yzj4dyy1nhxr8m46qp3fpi2kjnprxs303rnd"; depends=[bbotk checkmate data_table lgr matrixStats mlr3misc paradox R6]; }; mifa = derive2 { name="mifa"; version="0.2.0"; sha256="1rj3ba746f8759gird0vpvyb4fl0z2ihccpiv3qkr3sc64wgplln"; depends=[checkmate dplyr mice]; }; migest = derive2 { name="migest"; version="2.0.4"; sha256="0gksf8f1arpzxmcid1vskkf4s2r6k4n0ss85cag9429lmjpix5h4"; depends=[circlize dplyr forcats magrittr matrixStats migration_indices mipfp purrr stringr tibble tidyr]; }; migraph = derive2 { name="migraph"; version="1.3.4"; sha256="1j43apygc7m5gff07zabv3plm3hhhnv091fdxkvzlms9w0f2j1zy"; depends=[dplyr furrr future generics ggplot2 igraph manynet network pillar purrr rlang sna tidygraph tidyr]; }; @@ -13601,7 +13827,7 @@ in with self; { mineSweepR = derive2 { name="mineSweepR"; version="0.1.1"; sha256="0bnaa0652pspsd80v66b83np58429g8044941bsmr3apgf8660gj"; depends=[ComplexHeatmap dplyr gsignal hms InteractiveComplexHeatmap mgc mmand pals rlang]; }; mined = derive2 { name="mined"; version="1.0-3"; sha256="1ilfwm42r2mkcdxphqkz7b4szfr4m9gpfi9qid3625sq3rjk622r"; depends=[Rcpp RcppEigen]; }; minerva = derive2 { name="minerva"; version="1.5.10"; sha256="03srkii3rmx40lyr050bnrxil6w0hfv5pr64k339m66ciwyka9ig"; depends=[Rcpp RcppArmadillo]; }; - miniCRAN = derive2 { name="miniCRAN"; version="0.2.16"; sha256="1rr5wrh27055ikkvpsf19q9bkfhckafgmrn174iwzjh9s42w3nbq"; depends=[assertthat httr igraph]; }; + miniCRAN = derive2 { name="miniCRAN"; version="0.3.0"; sha256="1dfqish0vhvdp1a6kiw18z088sghndv9pviby51s7kqv0bjs3ca7"; depends=[assertthat httr igraph]; }; miniGUI = derive2 { name="miniGUI"; version="0.8-1"; sha256="0qb2fbkjwzn909yrk89d4951bwf8n05i0s265l8v2d4lpns9hc2i"; depends=[]; }; miniMeta = derive2 { name="miniMeta"; version="0.3.1"; sha256="0qd55a0a03a3q62hjpmi0815x4jff6zhrxavm1wb46c09y1hm62j"; depends=[colourpicker jsonlite markdown meta metafor readxl rhandsontable shiny shinyjs shinyWidgets WriteXLS]; }; miniPCH = derive2 { name="miniPCH"; version="0.3.2"; sha256="1z8zsagas50ndwygkxfdi933x5vq3dmq5kwmi3lg28hqdaf2hcnm"; depends=[checkmate Rcpp RcppArmadillo]; }; @@ -13610,17 +13836,17 @@ in with self; { minimalRSD = derive2 { name="minimalRSD"; version="1.0.0"; sha256="1p1jpi8lnv952k4c1wjgbgpb0hv4zg0f9qrd43cx0caibkqvhzf7"; depends=[]; }; minimap = derive2 { name="minimap"; version="0.1.0"; sha256="0y5yzic9pwpzs01gnl82syankijcjp85n22jn5zda0bp3y01r53r"; depends=[]; }; minimax = derive2 { name="minimax"; version="1.1.1"; sha256="1jx90xbxflsi1q2wm3dl4vhz246yxbvhc8zybiv5f7fafam28h6p"; depends=[]; }; - minimaxApprox = derive2 { name="minimaxApprox"; version="0.4.1"; sha256="01jcj0hx3iab06wdb17ngjdx4npdz64jjngm1d9vxixl4gipr30k"; depends=[]; }; + minimaxApprox = derive2 { name="minimaxApprox"; version="0.4.2"; sha256="069r2wcjlkv91vqvs7s089hmclngcrvawycr5vkfp65l7rlrg1qp"; depends=[]; }; minioclient = derive2 { name="minioclient"; version="0.0.6"; sha256="1caqigfjlga5vv5nk7k0jmzhiakj4xrbvpf43n0byygqqfpxd6i8"; depends=[fs glue jsonlite processx]; }; minpack_lm = derive2 { name="minpack.lm"; version="1.2-4"; sha256="0cg7arnmb7x6v5x487gkc2k4i5gchgdwblrrd0k0vw1w6pza83z3"; depends=[]; }; - minqa = derive2 { name="minqa"; version="1.2.6"; sha256="0421b4ysslaqmdgwlz080abis8m4xkcvjq7lx1wywbsz1s2vi9si"; depends=[Rcpp]; }; + minqa = derive2 { name="minqa"; version="1.2.7"; sha256="1qigwpcj8mz1fgq4ikq64pkqfwgw50bd928xbc4xaq6q3sflbwvn"; depends=[Rcpp]; }; minque = derive2 { name="minque"; version="2.0.0"; sha256="0pczdg22i3if048i64chzcpnv3ay8p0anmhwjmzm29577z0jgms8"; depends=[]; }; minsample1 = derive2 { name="minsample1"; version="0.1.0"; sha256="13kmqxa3pbllv16fzn0v7msffsaar79y8xnvnbrcfhwa76031f8f"; depends=[]; }; minsample2 = derive2 { name="minsample2"; version="0.1.0"; sha256="0q1rp6mdyhcp806a0m0sr4ldm5rj78wk2fljzylxfjs4c734lpbk"; depends=[]; }; + minty = derive2 { name="minty"; version="0.0.1"; sha256="1kbs4f36s5bnjpc5wcqawbk154n9wjpf549hsjj4xdcg7ihcdgfg"; depends=[cpp11 tzdb]; }; mipfp = derive2 { name="mipfp"; version="3.2.1"; sha256="1gxazpg81vj5dywpb6jb29188jw28qil6pfygawa7znnjn3k5ca6"; depends=[cmm numDeriv Rsolnp]; }; mipplot = derive2 { name="mipplot"; version="0.3.1"; sha256="126arvxq6gmaiwk3n3p0slnb1mhs3qf993m4lx95nlmnv612ag66"; depends=[data_table dplyr ggplot2 readr readxl reshape reshape2 rlang shiny shiny_i18n shinyalert shinyWidgets showtext showtextdb stringr tidyr]; }; - mirai = derive2 { name="mirai"; version="0.12.1"; sha256="0565cx9gl1wzkapcy102yicyhpw3wc4xcjxsk58585zdxjvpr2ym"; depends=[nanonext]; }; - mirai_promises = derive2 { name="mirai.promises"; version="0.4.1"; sha256="0yi9ks737b3afdbpj088lh33h2hb9bx993j2ag0klbwsfz2dffmi"; depends=[nanonext promises]; }; + mirai = derive2 { name="mirai"; version="1.1.0"; sha256="0nq3wrgizlii8a17i033glbl5ixgdwjxzpyi5yzf0icxbqaylm5w"; depends=[nanonext]; }; mirt = derive2 { name="mirt"; version="1.41"; sha256="0qx8qr4zd5jliamsmpr0c321g3k9ks1ki4fvy5lia3xgihp2s6yh"; depends=[dcurver Deriv GPArotation gridExtra lattice Matrix mgcv pbapply Rcpp RcppArmadillo vegan]; }; mirtCAT = derive2 { name="mirtCAT"; version="1.13"; sha256="1vlv93wjwj3ajf0mqjz38bi9fdk1sl0wqyqr7kjhhdj4znhrprbs"; depends=[lattice lpSolve markdown mirt pbapply Rcpp RcppArmadillo shiny]; }; mirtjml = derive2 { name="mirtjml"; version="1.4.0"; sha256="1zvm8acywpzi87lz0hpxmr8c9kyqkbx0490q3vlwxd90ffcdp9ml"; depends=[GPArotation Rcpp RcppArmadillo]; }; @@ -13637,7 +13863,6 @@ in with self; { miselect = derive2 { name="miselect"; version="0.9.2"; sha256="01jvxv79irqq1xkl826kqrdx9yx73lifb5xq90f5d34qycp1nxzi"; depends=[]; }; mispitools = derive2 { name="mispitools"; version="1.0.0"; sha256="1s54dm6c48ahib2p5firx3l0fxqxrcvfpk02smisbxna85vbfwd5"; depends=[DirichletReg dplyr forrel ggplot2 highcharter patchwork pedtools plotly purrr reshape2 shiny tidyr tidyverse]; }; mispr = derive2 { name="mispr"; version="1.0.0"; sha256="166piax3f7di8h0i07fbdx45lxz1p47j378v6yl6zdc3525adpjx"; depends=[e1071 MASS penalized]; }; - misreport = derive2 { name="misreport"; version="0.1.1"; sha256="1f78zcw4cg51mjvflhwd64hip2gj8x9ng1mhh4w43yv3x8hmbd6h"; depends=[mvtnorm numDeriv VGAM]; }; missCforest = derive2 { name="missCforest"; version="0.0.8"; sha256="1xdff1iddvagsw5b27wl0hbv21baj8cnkg17imfg9fkh1fik2s00"; depends=[partykit]; }; missCompare = derive2 { name="missCompare"; version="1.0.3"; sha256="03j69xw54d076znx19dplw4xznvgky90hxh3wgypg0g5pjg63y53"; depends=[Amelia data_table dplyr ggdendro ggplot2 Hmisc ltm magrittr MASS Matrix mi mice missForest missMDA pcaMethods plyr rlang tidyr VIM]; }; missDeaths = derive2 { name="missDeaths"; version="2.7"; sha256="1c8vbc7r1g4dkngmal6iqg7piw656h1vc6cmpkv16vjn4j0w2n2c"; depends=[cmprsk MASS mitools Rcpp relsurv rms survival]; }; @@ -13652,14 +13877,14 @@ in with self; { missingHE = derive2 { name="missingHE"; version="1.5.0"; sha256="0my6a768w7lixh6cw453bl2nrb5aqdiri309p5kp4psp17pzllak"; depends=[bayesplot BCEA coda ggmcmc ggplot2 ggpubr ggthemes gridExtra loo mcmcplots mcmcr R2jags]; }; missoNet = derive2 { name="missoNet"; version="1.2.0"; sha256="1k7959wjxxpzgrnwil7n51zf76zyri8c2m4m5h2w9az5pil2qmf0"; depends=[circlize ComplexHeatmap glasso mvtnorm pbapply Rcpp RcppArmadillo scatterplot3d]; }; misspi = derive2 { name="misspi"; version="0.1.0"; sha256="0rbkwfq3b7gvq3qwn3acbrdv4npvm5ixz6y7877alraqd0qjg1c8"; depends=[doParallel doSNOW foreach ggplot2 glmnet lightgbm plotly SIS]; }; - mistat = derive2 { name="mistat"; version="2.0.4"; sha256="1hr1gps0w3mfphnc221c6k7h7rwk1f7g6nxkxkb9g8sdacr7ijhh"; depends=[]; }; mistr = derive2 { name="mistr"; version="0.0.6"; sha256="103gvzcyrxscpsd8kv6zj8zx3r9mlbdjwd56msy0ngzcgrb4sb9d"; depends=[bbmle]; }; mistral = derive2 { name="mistral"; version="2.2.2"; sha256="1ssgglw2y1bkhlwcrmw8bv8ic6vl5nj4l482hlq8kv1dgyrnbsas"; depends=[DiceKriging doParallel e1071 foreach ggplot2 iterators Matrix mvtnorm quadprog Rcpp]; }; - misty = derive2 { name="misty"; version="0.6.2"; sha256="1jhmpw6hn11yqwx6iw8p7zfw28m60p8gdqhp1sc0wwhvz86ywns5"; depends=[ggplot2 haven lavaan lme4 nlme norm readxl rstudioapi writexl]; }; + misty = derive2 { name="misty"; version="0.6.3"; sha256="1s0vkxxh13r62rdq2xlwkw93chi862ynr7lznp29g5iz3r3dz103"; depends=[ggplot2 haven lavaan lme4 nlme norm readxl rstudioapi writexl]; }; + misuvi = derive2 { name="misuvi"; version="0.1.0"; sha256="0l62hm1d9bjxn53k50aq71i9f8fgj8v55m75l3f9qc88wr8fhqf2"; depends=[curl sf tigris]; }; mitml = derive2 { name="mitml"; version="0.4-5"; sha256="1szfw993ma4qn377bab08bkvm4s0sxs5x2hdcj9kgk47661fqsh5"; depends=[haven jomo pan]; }; mitools = derive2 { name="mitools"; version="2.4"; sha256="0c2x2n1p53lcw0vx4vmy5j7m2f95i7g2iwbryl89imr99rvz617j"; depends=[DBI]; }; mitre = derive2 { name="mitre"; version="1.0.0"; sha256="0r5phzxiibwwhx3qh623grfy070c3vzm4q07rzhsp5q5ycb5jhn5"; depends=[dplyr igraph jsonlite plyr RJSONIO rlang stringr tidyr]; }; - mix = derive2 { name="mix"; version="1.0-11"; sha256="1q565ymc1lh24lv0v70qwqb0p0nagg2jcz2nf7dz964bsnp20wjf"; depends=[]; }; + mix = derive2 { name="mix"; version="1.0-12"; sha256="05a3mklaawkch7spcin1rfzx556w315bklwipd64kzhfxj5nds1x"; depends=[]; }; mixAK = derive2 { name="mixAK"; version="5.7"; sha256="08n6shkibidqjmxjpjny48drxk3lmmnylh9l9ad3lrf8i2ixriqp"; depends=[coda colorspace fastGHQuad lme4 mnormt]; }; mixAR = derive2 { name="mixAR"; version="0.22.8"; sha256="1fr3i54yvxqvh78pgn8y5hdwp1sf00gl9shg5bc7nnmmm84ki78q"; depends=[BB combinat e1071 fGarch gbutils MCMCpack mvtnorm permute Rdpack timeDate]; }; mixIndependR = derive2 { name="mixIndependR"; version="1.0.0"; sha256="0wjzs56axdjas2a9ynw3gd78h0fgcfjpx3bk7nm895lmadyzih6y"; depends=[data_table]; }; @@ -13703,7 +13928,7 @@ in with self; { mkssd = derive2 { name="mkssd"; version="1.2"; sha256="1vgg5azr4qydqb6xbdbff9256bwz7gl3k3hpn7998rm9jhdmynnd"; depends=[]; }; mlVAR = derive2 { name="mlVAR"; version="0.5.2"; sha256="0xvkhbjkzrvg9x5rd1yn9kzk27f4khwil1837l83jyd33hlyfsj3"; depends=[abind arm clusterGeneration corpcor dplyr graphicalVAR lme4 MplusAutomation mvtnorm plyr qgraph rlang]; }; mlapi = derive2 { name="mlapi"; version="0.1.1"; sha256="1qyiii6x9b89i4pd4yi2zd23aabpmnpj18gqi5va0zy0l8r7kknr"; depends=[Matrix R6]; }; - mlbench = derive2 { name="mlbench"; version="2.1-3.1"; sha256="1w2w7nkrp69c0di0lss82jf4fbxdpqwxzqa2lrp55av8i7awdzks"; depends=[]; }; + mlbench = derive2 { name="mlbench"; version="2.1-5"; sha256="0vz7r4f0d0k7i9dx3r7gz8i7rs9f7b96qfjdajphqz6smm9ddgsd"; depends=[]; }; mlbplotR = derive2 { name="mlbplotR"; version="1.1.0"; sha256="02509dghl22zwgbb94d794d61970svz1pqrx49bp8l9y3if9n36d"; depends=[cli data_table ggplot2 gt lifecycle magick magrittr rlang scales]; }; mlbstats = derive2 { name="mlbstats"; version="0.1.0"; sha256="1pfsc1pc5986gykx8l6afahszhaj4940l8g33fdxyy7194kbcz70"; depends=[]; }; mldr = derive2 { name="mldr"; version="0.4.3"; sha256="07lbxpydz78fya11bl3l1ckhbps3nx43ddh3z09ygg70jjbdhxwq"; depends=[circlize shiny XML]; }; @@ -13712,61 +13937,65 @@ in with self; { mle_tools = derive2 { name="mle.tools"; version="1.0.0"; sha256="02yndj1if31zr9y805mq5km5n8jz4w9jz1bmaz9nnqsqimrnigrb"; depends=[]; }; mlearning = derive2 { name="mlearning"; version="1.2.1"; sha256="0fh28i36smpybhzd2kni435m7wf20i3yib6h7jy173r1v5adzkba"; depends=[class e1071 ipred MASS nnet randomForest rpart]; }; mlegp = derive2 { name="mlegp"; version="3.1.9"; sha256="1cs0l04axp6f6f6m4h4kw8z4pasxgp5la3xib04wxzb2l4bnsab3"; depends=[]; }; + mlelod = derive2 { name="mlelod"; version="1.0.0.1"; sha256="1rjdpc252ydxsh878nlgw65s41wl2hn5iwvd8mskxs72in9m8qsm"; depends=[]; }; mlergm = derive2 { name="mlergm"; version="0.8"; sha256="0bpdljmbn4lfm263jcsp0hrknixn49m7hqsx0jjk3pfwhgjlajh8"; depends=[cowplot ergm GGally ggplot2 lpSolve Matrix network plyr reshape2 sna stringr]; }; mlexperiments = derive2 { name="mlexperiments"; version="0.0.3"; sha256="0xkrppicb8h9ccnk25bl957ip6di19vk6fnc25r8q4ckpsyw2kz1"; depends=[data_table kdry progress R6 splitTools]; }; mlf = derive2 { name="mlf"; version="1.2.1"; sha256="09ihnibpknpp26hdlbxyr99yz7z0n8qpsjs5aq3zngng0yh3wdn9"; depends=[]; }; mlfit = derive2 { name="mlfit"; version="0.5.3"; sha256="0nyk5vmy2gkpz022djacy80gibskv96z0rsmjz2rw14zhc5kizsh"; depends=[BB dplyr forcats hms kimisc lifecycle Matrix plyr rlang tibble wrswoR]; }; - mlflow = derive2 { name="mlflow"; version="2.11.1"; sha256="0y3xii7jw3kc6fw3qv0jig8hgjcczsm05y4gwd7c7r8y9dvna741"; depends=[base64enc forge fs git2r glue httpuv httr ini jsonlite openssl processx purrr rlang swagger tibble withr yaml zeallot]; }; + mlflow = derive2 { name="mlflow"; version="2.13.1"; sha256="0jzqqdwychrandbcsih3g1gcpj0hg7lw53c6c762akll14g7yd5k"; depends=[base64enc forge fs git2r glue httpuv httr ini jsonlite openssl processx purrr rlang swagger tibble withr yaml zeallot]; }; mlim = derive2 { name="mlim"; version="0.3.0"; sha256="16p3nprnxc0cghfbwcs3hf57aasqpvd4qv3wajhzrajqhmclzn0q"; depends=[curl h2o md_log memuse mice missRanger]; }; mllrnrs = derive2 { name="mllrnrs"; version="0.0.3"; sha256="08xrinkbl4bws7hbid6907b618mqays4zimkwdni9s2amah3ja4b"; depends=[data_table kdry mlexperiments R6]; }; mlmRev = derive2 { name="mlmRev"; version="1.0-8"; sha256="0ln4nazhc1prnlmvhfzhx268vx3klb0xnz1nsiwh0pwyskskyzym"; depends=[lme4]; }; mlma = derive2 { name="mlma"; version="6.3-1"; sha256="16v3rwdc7kzn2k84ghkss14p1kqx86md9k1xv2k2x187f5lncamh"; depends=[abind car coxme gplots lme4 survival]; }; - mlmhelpr = derive2 { name="mlmhelpr"; version="0.1.0"; sha256="1liqawmdz3a8jxnlbhxx9iz5nlybkyz7jr719y0xkqz4h741bj5s"; depends=[lme4 mathjaxr Rdpack]; }; + mlmhelpr = derive2 { name="mlmhelpr"; version="0.1.1"; sha256="16p94w6lh6k5dlfmi1kfdnm7q05c0d30gf08qcm9z9mm9yyilp0d"; depends=[lme4 mathjaxr Rdpack]; }; mlmi = derive2 { name="mlmi"; version="1.1.2"; sha256="1nkg7h0r716yv9y6xnx8qcpvrqr6cxlhqrcyiihkwgwbmkgkp5sz"; depends=[cat gsl MASS Matrix mix nlme norm]; }; mlmm_gwas = derive2 { name="mlmm.gwas"; version="1.0.6"; sha256="14xp8k7sww1skyw5l2006gpaw2c6yrri5nmfx4yav4vqdlhcj2k1"; depends=[coxme Matrix multcomp multcompView sommer]; }; - mlmpower = derive2 { name="mlmpower"; version="1.0.6"; sha256="1zj0irg72swii56rfx6ipjlzyvn1jickfv8aq2g301hh1npnfw1s"; depends=[cli lme4 lmerTest varTestnlme]; }; + mlmpower = derive2 { name="mlmpower"; version="1.0.8"; sha256="0sakpiqi220j00w8s251ajaknm2lcg9jf9kif4l4qnz6z2vzn7y2"; depends=[cli lme4 lmerTest varTestnlme]; }; mlmtools = derive2 { name="mlmtools"; version="1.0.2"; sha256="1fwa0cwrrhzxr5zkvmf0q1w2wlrhj58lwmrvqxfn00v0v9d6bi0g"; depends=[ggplot2 lme4]; }; mlmts = derive2 { name="mlmts"; version="1.1.1"; sha256="10xy4qzdik1rjs11ql798ig7y5cm3hjc61n5dhxfzpi1w0wk3smi"; depends=[AID caret ClusterR complexplus DescTools dtw e1071 fda_usc forecast freqdom geigen ggplot2 igraph MASS Matrix MTS multiwave pracma pspline psych quantspec randomForest ranger Rdpack Rfast TSA TSclust TSdist tseries tseriesChaos tsfeatures waveslim]; }; mlogit = derive2 { name="mlogit"; version="1.1-1"; sha256="0hyi6gi03n895iydrfr1ba2ifbsd6lyjyhkq62d95ghhniysjgkg"; depends=[dfidx Formula lmtest MASS Rdpack statmod zoo]; }; mlogitBMA = derive2 { name="mlogitBMA"; version="0.1-7"; sha256="0q8c5897z8f519nf6p55ksc610a9dbpnah2rr4srij4gs9a4clx1"; depends=[abind BMA maxLik]; }; - mlpack = derive2 { name="mlpack"; version="4.3.0.1"; sha256="0sam788qzqqqxs06hrzyndbkvpkyfsz4l2dfl1zrchyws7qk2rdd"; depends=[Rcpp RcppArmadillo RcppEnsmallen]; }; + mlpack = derive2 { name="mlpack"; version="4.4.0"; sha256="0x8apd4pyyg5i326z7259y604yqcw02l1537nm83rdczrs5c9r3z"; depends=[Rcpp RcppArmadillo RcppEnsmallen]; }; mlpwr = derive2 { name="mlpwr"; version="1.1.0"; sha256="18w0vklxy61v0r33xi57j3s76iwsb2cs2cjhg1gjyxzl07byj89j"; depends=[DiceKriging digest ggplot2 randtoolbox rgenoud rlist WeightSVM]; }; mlquantify = derive2 { name="mlquantify"; version="0.2.0"; sha256="1fpwvix0f4bmqb1y1b6wryndqp6j24dwsspbfx1zrnhzwj1v4i9i"; depends=[caret FNN randomForest]; }; - mlr = derive2 { name="mlr"; version="2.19.1"; sha256="00jjhvaqifj6glqsyzixlp56bvlch5smck8kk3klcmwx9pasyllx"; depends=[backports BBmisc checkmate data_table ggplot2 parallelMap ParamHelpers stringi survival XML]; }; - mlr3 = derive2 { name="mlr3"; version="0.18.0"; sha256="0v83lwigpm227dqr8hz5x1khcjqf3q0glqvz812sckbcf74ibhdz"; depends=[backports checkmate data_table evaluate future future_apply lgr mlbench mlr3measures mlr3misc palmerpenguins paradox parallelly R6 RhpcBLASctl uuid]; }; + mlr = derive2 { name="mlr"; version="2.19.2"; sha256="1icpa3xa0f7l40i52l3pl43m98j69r75qnqf1yp7wyh6y54p1rl5"; depends=[backports BBmisc checkmate data_table ggplot2 parallelMap ParamHelpers stringi survival XML]; }; + mlr3 = derive2 { name="mlr3"; version="0.19.0"; sha256="0dgik4lfrw5m2sqxp33kzkdp7ihlcm27y5p5g5b9wah7h7ramiqs"; depends=[backports checkmate data_table evaluate future future_apply lgr mlbench mlr3measures mlr3misc palmerpenguins paradox parallelly R6 RhpcBLASctl uuid]; }; mlr3batchmark = derive2 { name="mlr3batchmark"; version="0.1.1"; sha256="1qirzjmb17y1rzq69x1lpl56qk5w63zjq30if97vfab3spsd2ilf"; depends=[batchtools checkmate data_table lgr mlr3 mlr3misc uuid]; }; mlr3benchmark = derive2 { name="mlr3benchmark"; version="0.1.6"; sha256="1bhn0lm0k9dm9mbji6cwgqkwsa1qg928fbjs8chra9s3d3bzcb0x"; depends=[checkmate data_table ggplot2 mlr3misc R6]; }; mlr3cluster = derive2 { name="mlr3cluster"; version="0.1.9"; sha256="09fsw2b43f9m7clv1qwylimyz622snhn9ykq3xwbiric7zr4ca91"; depends=[backports checkmate clue cluster data_table fpc mlr3 mlr3misc paradox R6]; }; mlr3data = derive2 { name="mlr3data"; version="0.7.0"; sha256="04hwmj8cdszwgd845va26pgzdw0k4cm025zjrmp3fr7ypp73mirg"; depends=[]; }; mlr3db = derive2 { name="mlr3db"; version="0.5.2"; sha256="1cq22h9yj27ighh4clyak1xwx2wb5v4803hd7lrhnlgzs85dmhj2"; depends=[backports checkmate data_table mlr3 mlr3misc R6]; }; mlr3fairness = derive2 { name="mlr3fairness"; version="0.3.2"; sha256="0rm6l50prwjjy55p14zs9mkdrczbyl7f63fqsmh7r5xjahcsnfi7"; depends=[checkmate data_table ggplot2 mlr3 mlr3learners mlr3measures mlr3misc mlr3pipelines paradox R6 rlang]; }; - mlr3filters = derive2 { name="mlr3filters"; version="0.7.1"; sha256="07qgk26ls8wgf9k82xlnsjwi7mpnpgi7i2yplfb5hsqn8nfj6hcc"; depends=[backports checkmate data_table mlr3 mlr3misc paradox R6]; }; + mlr3fda = derive2 { name="mlr3fda"; version="0.1.2"; sha256="1r1dqhh9s09vz3fsxwss7af7wb4nmm7lynh9wl67mjs52yf5d4k2"; depends=[checkmate data_table lgr mlr3 mlr3misc mlr3pipelines paradox R6 tf]; }; + mlr3filters = derive2 { name="mlr3filters"; version="0.8.0"; sha256="16z359bc2li7f35xk4g08np3r2a3127avv0ak6bn9bywcs13z6bl"; depends=[backports checkmate data_table mlr3 mlr3misc paradox R6]; }; mlr3fselect = derive2 { name="mlr3fselect"; version="0.12.0"; sha256="1f18y4ahnjzlwk9pfs87i80kb6z84hgyc5cdlj3mafawq790hg1h"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc paradox R6]; }; mlr3hyperband = derive2 { name="mlr3hyperband"; version="0.5.0"; sha256="1x6vfhadxlb4c9q61d5qv957mkyfwdwchzbg3flfd0j28b4bck1p"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc mlr3tuning paradox R6]; }; mlr3learners = derive2 { name="mlr3learners"; version="0.6.0"; sha256="06gz6h19cnb62js1b35nddy453dyj64mr788p8ww56kgfk6yzxr8"; depends=[checkmate data_table mlr3 mlr3misc paradox R6]; }; mlr3mbo = derive2 { name="mlr3mbo"; version="0.2.2"; sha256="0jdj5dx6jb7n0g950h0j8jhafdj5mcalv5vxfiyf07myr6mjipri"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc mlr3tuning paradox R6 spacefillr]; }; mlr3measures = derive2 { name="mlr3measures"; version="0.5.0"; sha256="0k0i1xx63lds1870p2ljy1dlp2i376gdd0sq9s4xiqljqjb8va57"; depends=[checkmate PRROC]; }; - mlr3misc = derive2 { name="mlr3misc"; version="0.14.0"; sha256="19q20ld2phplrg6jqg849rjpi8yl3j5v1d8bgzagyyhka3nxn4fx"; depends=[backports checkmate data_table digest R6]; }; - mlr3oml = derive2 { name="mlr3oml"; version="0.9.0"; sha256="08px4k8qrwwsay0f9h1nkpf7w30z0n4w189q2ijhb3kbrd0jhf1j"; depends=[backports bit64 checkmate curl data_table jsonlite lgr mlr3 mlr3misc paradox R6 stringi uuid withr]; }; - mlr3pipelines = derive2 { name="mlr3pipelines"; version="0.5.0-2"; sha256="0iv09qmr1gpipcylw8mp1y7kqjljy8p5sx466l1wxfaqkf7kw15j"; depends=[backports checkmate data_table digest lgr mlr3 mlr3misc paradox R6 withr]; }; + mlr3misc = derive2 { name="mlr3misc"; version="0.15.0"; sha256="1l40l0sx1dgs2rdblx7pd9nk93flad6y1mvppzg7qf4cyn8gfc3x"; depends=[backports checkmate data_table digest R6]; }; + mlr3oml = derive2 { name="mlr3oml"; version="0.10.0"; sha256="0qlgqq22zy5kdgp6l6fg3yx8ywxpy4yaa2567j9z1pg5ij9yd49h"; depends=[backports bit64 checkmate curl data_table jsonlite lgr mlr3 mlr3misc paradox R6 stringi uuid withr]; }; + mlr3pipelines = derive2 { name="mlr3pipelines"; version="0.5.2"; sha256="1glp4z5wnvcsil37gzvbvazn73088vilks9c5limnwhz8f454147"; depends=[backports checkmate data_table digest lgr mlr3 mlr3misc paradox R6 withr]; }; + mlr3resampling = derive2 { name="mlr3resampling"; version="2024.4.14"; sha256="0fgn46vh8m9i2vb3ppkghl54a4rrp2mw8fm54l2kzj53y6hsjbvd"; depends=[checkmate data_table mlr3 mlr3misc paradox R6]; }; mlr3shiny = derive2 { name="mlr3shiny"; version="0.3.0"; sha256="0rv5ybg6l1n7j6gq8wmvl1gd1mdmqd52vl91hkpv9k1l1w8m8mph"; depends=[data_table dplyr DT Metrics mlr3 mlr3learners mlr3measures mlr3pipelines patchwork plyr purrr shiny shinyalert shinydashboard shinyjs shinyWidgets stringr]; }; mlr3spatial = derive2 { name="mlr3spatial"; version="0.5.0"; sha256="105wscgkrlgckrmisr1b5xf8wlj9w2w7ir8w1280isyg2zp1gva8"; depends=[checkmate data_table lgr mlr3 mlr3misc R6 sf terra]; }; - mlr3spatiotempcv = derive2 { name="mlr3spatiotempcv"; version="2.3.0"; sha256="0a9vkq0s1g0sav78gmg0wz5yq871151rzavg6prhn4yqiznr0rwm"; depends=[checkmate data_table ggplot2 mlr3 mlr3misc paradox R6]; }; + mlr3spatiotempcv = derive2 { name="mlr3spatiotempcv"; version="2.3.1"; sha256="04n5bzppkj9fmdhd54qk8738id0sfd3ij7p31l3hxmjbak5inh83"; depends=[checkmate data_table ggplot2 mlr3 mlr3misc paradox R6]; }; + mlr3summary = derive2 { name="mlr3summary"; version="0.1.0"; sha256="16r9sjjjy3f3aqjw1npibqk0pwhdajh6r3rkrypjfl80mhk9fpi4"; depends=[backports checkmate cli data_table future_apply mlr3 mlr3misc]; }; mlr3tuning = derive2 { name="mlr3tuning"; version="0.20.0"; sha256="1y1cqfqdx9v0lfb4619y2hw6clhhjzi7hjwrpwzdpd7ymcx3dgi3"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc paradox R6]; }; mlr3tuningspaces = derive2 { name="mlr3tuningspaces"; version="0.5.0"; sha256="1snrd7xq388mvqh0ydaxvx8k9iwp40g06c3irp0m718jw3wsz5vm"; depends=[checkmate data_table mlr3 mlr3misc mlr3tuning paradox R6]; }; mlr3verse = derive2 { name="mlr3verse"; version="0.2.8"; sha256="0ld4vch1qdq3gh8vhj38s2wz7acn5z7f8hxmnwnrq22g44gckd8s"; depends=[bbotk data_table mlr3 mlr3cluster mlr3data mlr3filters mlr3fselect mlr3hyperband mlr3learners mlr3mbo mlr3misc mlr3pipelines mlr3tuning mlr3tuningspaces mlr3viz paradox]; }; mlr3viz = derive2 { name="mlr3viz"; version="0.8.0"; sha256="1m2f54yqhk1bd4c30vd1z509yblz6y4i8qkwhg73aa1sflnsycvf"; depends=[checkmate data_table ggplot2 mlr3misc scales viridis]; }; mlrCPO = derive2 { name="mlrCPO"; version="0.3.7-7"; sha256="0nia2f8j5vgiradlcqi618mlv7146ml2pvbzh4p89p1pk75p6v0l"; depends=[backports BBmisc checkmate mlr ParamHelpers stringi]; }; mlrMBO = derive2 { name="mlrMBO"; version="1.1.5.1"; sha256="16fwj7m28g4km7yalqppxmh3lw2jln0z072l6awia38qkdg6xwhc"; depends=[backports BBmisc checkmate data_table lhs mlr parallelMap ParamHelpers smoof]; }; - mlrintermbo = derive2 { name="mlrintermbo"; version="0.5.0"; sha256="1nyaqf6vkckdh7jb27iwv5dnvrh4bp0kkc5jzbqkyi8af11phg1l"; depends=[backports bbotk callr checkmate data_table lhs mlr3misc mlr3tuning paradox R6]; }; + mlrintermbo = derive2 { name="mlrintermbo"; version="0.5.1-1"; sha256="0hghnpsh6jm3vghn03v483cmqin2wxsvcahhzjg6x0wdszhmskhv"; depends=[backports bbotk callr checkmate data_table lhs mlr3misc mlr3tuning paradox R6]; }; mlrpro = derive2 { name="mlrpro"; version="0.1.2"; sha256="1j8w8ji1n6cahcbyi1q4zq8gmhpcl15pb97f7bl1km29f4x4f272"; depends=[car dplyr MASS]; }; mlrv = derive2 { name="mlrv"; version="0.1.1"; sha256="1r6q8wakvyz0d1fjc0xpl66yxj0c9jr721yx3h3986x6gi6s0k81"; depends=[doParallel foreach magrittr mathjaxr numDeriv Rcpp RcppArmadillo xtable]; }; mlsbm = derive2 { name="mlsbm"; version="0.99.2"; sha256="1p6fflhjbbyzx51hb77aak1kdabjrmzd7b47vdcanhb0vd263aby"; depends=[Rcpp RcppArmadillo]; }; mlsjunkgen = derive2 { name="mlsjunkgen"; version="0.1.2"; sha256="1icsssgi5xf420ajagr9nw0wgbxpfm7dsd5b7s77vyh5hsfzm1z3"; depends=[]; }; - mlstrOpalr = derive2 { name="mlstrOpalr"; version="1.0.2"; sha256="0lifas5irjhyrys6ykbm1pji7rnhr4mg1f0asi26i8pk3048ri25"; depends=[dplyr fabR madshapR opalr rlang stringr tidyr]; }; + mlstrOpalr = derive2 { name="mlstrOpalr"; version="1.0.3"; sha256="11h9i5yljd7k68rz1gj131yzv6idj7ji3fya7kc7rgpinivqxnxa"; depends=[dplyr fabR madshapR opalr rlang stringr tidyr]; }; mlsurvlrnrs = derive2 { name="mlsurvlrnrs"; version="0.0.3"; sha256="0x4spjcgbqz13fxnyabd1vypbdg6r94zmh7h5h65rhnb5j8fgsm3"; depends=[data_table kdry mlexperiments mllrnrs R6]; }; - mlt = derive2 { name="mlt"; version="1.5-0"; sha256="0l44l3p3f6px8kamli3fq479jy99wjfy8q8hkqjlwidr261bv6mz"; depends=[alabama basefun BB coneproj Matrix nloptr numDeriv sandwich survival variables]; }; - mlt_docreg = derive2 { name="mlt.docreg"; version="1.1-7"; sha256="05vrgddg4j2yc6b07dqypid9gvvpilv9ky2bgwml0az629666111"; depends=[eha flexsurv lattice mlt multcomp numDeriv survival truncreg]; }; + mlt = derive2 { name="mlt"; version="1.5-1"; sha256="1bhcw5b2mwvr9qsssxd9qd9qn5k0v8g925dqfm1ziycniaprm9g6"; depends=[alabama basefun BB coneproj Matrix nloptr numDeriv sandwich survival variables]; }; + mlt_docreg = derive2 { name="mlt.docreg"; version="1.1-8"; sha256="1hyzfz2s27n4bavz9b9g50w5fdhinj4dgijadbll52dih7v97dnl"; depends=[eha flexsurv lattice mlt multcomp numDeriv survival truncreg]; }; mltest = derive2 { name="mltest"; version="1.0.1"; sha256="14gyssfph088v936mpywmd4y8z9vdv0zk8638vlg23j8cf5j4al2"; depends=[]; }; mltools = derive2 { name="mltools"; version="0.3.5"; sha256="045v28w7vz1zjxim8vfc6ncvg2mavr1q332x0hzlqpfzrk7gz4vh"; depends=[data_table Matrix]; }; mlxR = derive2 { name="mlxR"; version="4.2.0"; sha256="0pr564376q7pn0wbbw5q9mjfzdc0bpq1g4xj0bcdmb64binqllvb"; depends=[ggplot2]; }; @@ -13784,20 +14013,18 @@ in with self; { mmconvert = derive2 { name="mmconvert"; version="0.10"; sha256="1bmvcvkisqmfnpwwwb8fvnqq5fbdd6ppsi6iw9parbmzrnir8zmj"; depends=[Rcpp]; }; mme = derive2 { name="mme"; version="0.1-6"; sha256="1k60y1yrf7fv939v32kf3il7r3cws0kih4bpm0ap28fvbx3vr3yb"; depends=[MASS Matrix]; }; mmeln = derive2 { name="mmeln"; version="1.5"; sha256="06knagiyhm24rk4m2p7yz61sscxplwpwbwf1356jazxp7y0v61xp"; depends=[]; }; - mmeta = derive2 { name="mmeta"; version="3.0.0"; sha256="088mynadrcwrw7g31f6p0g3ykq2q44mwsbpp056v8s19hq5pxjn1"; depends=[aod ggplot2]; }; mmiCATs = derive2 { name="mmiCATs"; version="0.1.1"; sha256="1dnh77ac2m8sbv3ly1wny2nn86f13bs90f91gzzy83x2r4a3bvfj"; depends=[broom broom_mixed clusterSEs DT lmerTest MASS mmcards robust robustbase shiny shinythemes]; }; - mmibain = derive2 { name="mmibain"; version="0.1.1"; sha256="0m7ivz6ms06s9zh2696jz04cb1p8xhpippygvil9f16259a8yvrw"; depends=[bain broom car e1071 igraph lavaan mmcards psych shiny shinythemes]; }; + mmibain = derive2 { name="mmibain"; version="0.2.0"; sha256="1ii2lfsbmp0n85a3y76zp87fpj5nm5ndigjyl09sl0cl2g8q7ql7"; depends=[bain broom car DT e1071 ggplot2 igraph lavaan mmcards psych shiny shinythemes]; }; mmirestriktor = derive2 { name="mmirestriktor"; version="0.2.1"; sha256="1qgj3rrri87dj3h3v6r7f5kjyy8b85qn0s7i62qll0lf8fnj334d"; depends=[DT MASS mmcards restriktor shiny shinythemes]; }; mmmgee = derive2 { name="mmmgee"; version="1.20"; sha256="0y3pwnc9h7y2l9cvgfl62nl1vnnkla2y8082jhdvxsb3mk88rgad"; depends=[Matrix mvtnorm]; }; mmod = derive2 { name="mmod"; version="1.3.3"; sha256="1dz6887mlqbagjj98wcabmxj9hvsz8pgsizy1fqkwjhhs44c62y4"; depends=[adegenet pegas]; }; mmodely = derive2 { name="mmodely"; version="0.2.5"; sha256="0fw2ncva8y5jxybi51bbqygkag5zaswni8bfg4gf78yjvjw3iyj5"; depends=[ape caper caroline]; }; mmpca = derive2 { name="mmpca"; version="2.0.3"; sha256="1kzjwl0sn8cdgw3jw95lg90vgh47iw293ffn7c0fb9kgxisd6dma"; depends=[digest Rcpp RcppEigen RcppGSL]; }; - mmpf = derive2 { name="mmpf"; version="0.0.5"; sha256="1w1ll1l7yzwb1wmlrcfpgqyzni7yb20kxy422y867hx2ndxlfwpz"; depends=[checkmate data_table]; }; mmpp = derive2 { name="mmpp"; version="0.6"; sha256="16aypjf4i0ya3qgxqrrg8y0xbnq1pnqky1dpkgln5q494hphyg91"; depends=[]; }; mmr = derive2 { name="mmr"; version="0.1.0"; sha256="0by2v47b4kpjhfxzzl6kc1shw7g46nwnww4rq333r2cywvrbkk4w"; depends=[]; }; mmrm = derive2 { name="mmrm"; version="0.3.11"; sha256="1w7kpjsa59zri2jqaxlr4b7lg57xrnnwlak9wb6midlb3n8pw5f1"; depends=[checkmate generics lifecycle Matrix nlme Rcpp RcppEigen Rdpack stringr testthat tibble TMB]; }; mmsample = derive2 { name="mmsample"; version="0.1"; sha256="0mdd2zryadd31a5pls5fvlxx52mr54jsi1i6mwrs4y7rl3i9v95z"; depends=[MASS Rcpp RcppArmadillo]; }; - mmstat4 = derive2 { name="mmstat4"; version="0.1.6"; sha256="0glbf5s0d0l52by6iygnmr9yz6gw1mycgypfkfciixys4zii9ylj"; depends=[digest httr rappdirs rio rstudioapi shiny]; }; + mmstat4 = derive2 { name="mmstat4"; version="0.2.1"; sha256="0n6vj5s5jlj09nmzhyv64ll07s4q7ci0q80xvl9zpa3idmbqjw24"; depends=[crayon digest httr knitr rappdirs reticulate rio rstudioapi shiny stringdist]; }; mmtsne = derive2 { name="mmtsne"; version="0.1.0"; sha256="1by0hrggla6idc1isnq072i1wfpw4x7id3hkg8l65gy8iycccd12"; depends=[]; }; mnda = derive2 { name="mnda"; version="1.0.9"; sha256="1lmkxdfym1jfq05vpjky1b6nz1xwzsdh9mz3017v23qyg7dmbzyi"; depends=[aggregation assertthat ggplot2 ggraph igraph keras magrittr MASS Matrix reticulate tensorflow usethis]; }; mnet = derive2 { name="mnet"; version="0.1.2"; sha256="02chp8g5303nbcbvfmm10lh63170290fyg9kbfxgr2krg08gbr1v"; depends=[doParallel foreach mlVAR]; }; @@ -13820,7 +14047,7 @@ in with self; { mod09nrt = derive2 { name="mod09nrt"; version="0.14"; sha256="1wn1y33bj9r712l0f063j5gcl423anjzmvgfy0ddihcrbpz4l7a0"; depends=[]; }; mod2rm = derive2 { name="mod2rm"; version="0.2.1"; sha256="1adx8ndz299hzlljahvbv1px60dfchwh2ic6njr12k3zcm52rsby"; depends=[ggplot2 scales]; }; modACDC = derive2 { name="modACDC"; version="2.0.1"; sha256="1djgkch4lyca46vy8djqfk3qwi8zx21j4hkwylkydlgl9fzk59j3"; depends=[CCP data_table doParallel foreach genieclust genio ggplot2 partition tibble tidyr]; }; - modEvA = derive2 { name="modEvA"; version="3.13.3"; sha256="1j1i9dyanv23szfsn0v1s4is2w5a5gvf9blg29q28ymn7v4xhig9"; depends=[terra]; }; + modEvA = derive2 { name="modEvA"; version="3.17"; sha256="1c7kv3jn38kxxxgzmpanla5jnhadh3qzvjw8w5bivdmv1gda6yzj"; depends=[terra]; }; modMax = derive2 { name="modMax"; version="1.1"; sha256="1mx4623az7vzaqf530pklx7j92qwwq93pa2416lnr24jjcxgva2h"; depends=[gtools igraph]; }; modQR = derive2 { name="modQR"; version="0.1.3"; sha256="15ks5i7s19r4s9faxn36qlcf4y150b6xji970kxgilcgxvfqkgd8"; depends=[geometry lpSolve]; }; modTurPoint = derive2 { name="modTurPoint"; version="0.1.0"; sha256="1m24vsi80ln1r7sr40pipaaanyc60yfxmjzf8l7nfy3yvyr8zqpn"; depends=[]; }; @@ -13832,26 +14059,26 @@ in with self; { modelObj = derive2 { name="modelObj"; version="4.2"; sha256="0qj8ri7aw9lc7cc7rcs618bcbarcs29zgbz8l74s55qajvwpssg0"; depends=[]; }; modelSSE = derive2 { name="modelSSE"; version="0.1-3"; sha256="0fqxwdsvfpzd182pwwib2ci6q76hzlw5ykkwzk20l5hglhdf057q"; depends=[Delaporte]; }; modelStudio = derive2 { name="modelStudio"; version="3.1.2"; sha256="10d1z0l5wfbyl2dm4n705bmj8wa5a99jnp4w6z66bx7cqamxapa3"; depends=[DALEX digest iBreakDown ingredients jsonlite progress r2d3]; }; - modelbased = derive2 { name="modelbased"; version="0.8.7"; sha256="0xzayaxqlmzgpsc80gabmhwy1mv1cdn1zp9mkq9bmcgh6p3635vw"; depends=[bayestestR datawizard effectsize insight parameters performance]; }; + modelbased = derive2 { name="modelbased"; version="0.8.8"; sha256="0fksigmpps5xrxqk2v7afm1zsg87mc11bfid160f84wixfk7hqw6"; depends=[bayestestR datawizard effectsize insight parameters performance]; }; modelbpp = derive2 { name="modelbpp"; version="0.1.3"; sha256="1mji4i8xpl833lhs6prbvfy6vz4276qhi4zidy8rhdl6szvq8r6s"; depends=[igraph lavaan pbapply]; }; modelc = derive2 { name="modelc"; version="1.0.0.0"; sha256="0xz1zgv5yyvq0yfnhm1kvb4wvlyn4ccd0lkwji55vq8hndvjvk98"; depends=[]; }; modeldata = derive2 { name="modeldata"; version="1.3.0"; sha256="035gyxgs9byij9d5vpw35a96f7xlhfj3k6c140mql4yfplm5rk23"; depends=[dplyr MASS purrr rlang tibble]; }; - modeldatatoo = derive2 { name="modeldatatoo"; version="0.2.1"; sha256="0qric17sxfy4w4pgp8cvmm30vq9lddk58hzqrm5f7s63ydjb4n2i"; depends=[pins]; }; + modeldatatoo = derive2 { name="modeldatatoo"; version="0.3.0"; sha256="07wjrwgmg96gj8mxsx8g33l3609hrk4wvw31ml1sw3jgxpfziw7r"; depends=[pins]; }; modeldb = derive2 { name="modeldb"; version="0.3.0"; sha256="109ggy93ikcc5mv8jx8z8kx41pzzbz96mgqzwf8z7175ir6bql6z"; depends=[cli dplyr ggplot2 progress purrr rlang tibble tidypredict]; }; modelenv = derive2 { name="modelenv"; version="0.1.1"; sha256="1pnc3bs2fzanqzjv2y8a7yy6s8hmwwsccjc8pvifff5kp557a6di"; depends=[glue rlang tibble vctrs]; }; modelfactory = derive2 { name="modelfactory"; version="1.0.0"; sha256="1bdcfcbd1lnx683npvwbxigqg3mbgnm2ji46nfywbay6disrc15h"; depends=[dplyr MASS tibble]; }; modelfree = derive2 { name="modelfree"; version="1.2"; sha256="08kqc5a5ray0wgnd8c6d1frqzg9q990j1p78j7j7c5xll402c8ns"; depends=[PolynomF SparseM]; }; + modelgrid = derive2 { name="modelgrid"; version="1.2.0"; sha256="0i8sdyp5ngpwzjcqyk4galnn42vzqspndffj7kcimikvrk30b4d7"; depends=[caret dplyr magrittr purrr]; }; modelimpact = derive2 { name="modelimpact"; version="1.0.0"; sha256="16sy7r6bw5nzx77rd27ihgvp7bs39xchgid94ssklj6syc3kn2vq"; depends=[dplyr magrittr]; }; modelr = derive2 { name="modelr"; version="0.1.11"; sha256="1lvv6gac3g4x1d58chbvlxlkd77qz21a3rlb64jvzwycx43dbswl"; depends=[broom magrittr purrr rlang tibble tidyr tidyselect vctrs]; }; - modelsummary = derive2 { name="modelsummary"; version="1.4.5"; sha256="1jams44j0alfpk2lza4w2yfmq2h12kxnbhznndyz57pfajyh7glx"; depends=[checkmate data_table generics glue insight kableExtra parameters performance tables tinytable]; }; - modeltests = derive2 { name="modeltests"; version="0.1.5"; sha256="032rd168blk73147fvxxxfnzwwmb92252qpdk5ljcb2mzv3id7x3"; depends=[dplyr generics purrr testthat tibble]; }; + modelsummary = derive2 { name="modelsummary"; version="2.1.1"; sha256="1sqb5c34ymv2bvkrc2c3fd24ajjn2zz0rhasv3gdmbrp8fxgyxf8"; depends=[checkmate data_table generics glue insight parameters performance tables tinytable]; }; + modeltests = derive2 { name="modeltests"; version="0.1.6"; sha256="112pwkrg3d1lmcqhs946nm4dxhp9h7gvjibvhcjzlmd1d0qhlivc"; depends=[dplyr generics purrr testthat tibble]; }; modeltime = derive2 { name="modeltime"; version="1.2.8"; sha256="1wvmz4wr972msfrld26ygahn1sky3p10x18975kbaksrw8qgz4ag"; depends=[cli dials doParallel dplyr forcats foreach forecast ggplot2 glue gt hardhat janitor magrittr parallelly parsnip plotly prophet purrr reactable rlang scales StanHeaders stringr tibble tidymodels tidyr tidyverse timetk workflows xgboost yardstick]; }; - modeltime_ensemble = derive2 { name="modeltime.ensemble"; version="1.0.3"; sha256="17mnz2x7i540gzwpqca106saafvsns9ar1q09pnnzkx2m4xv322i"; depends=[cli doParallel dplyr foreach generics glue magrittr modeltime modeltime_resample parsnip purrr recipes rlang rsample stringr tibble tictoc tidyr timetk tune workflows yardstick]; }; modeltime_resample = derive2 { name="modeltime.resample"; version="0.2.3"; sha256="0prc4q5s6iwhknxlbaq43cyhmzwnmi52akpaf1zizw4c6flgny3v"; depends=[cli crayon dials dplyr forcats ggplot2 glue hardhat magrittr modeltime parsnip plotly progressr purrr recipes rlang rsample stringr tibble tictoc tidyr timetk tune workflows yardstick]; }; modeltools = derive2 { name="modeltools"; version="0.2-23"; sha256="1vqh69256h344sbj5affm0kmc77dakrxp6442xfdnfd0y5d8sgkb"; depends=[]; }; modelwordcloud = derive2 { name="modelwordcloud"; version="0.1"; sha256="0ardib0h923i7jk8bgcq6pn2zazx9acf9sdggifsk46hdz8hvqnm"; depends=[]; }; moder = derive2 { name="moder"; version="0.2.1"; sha256="19lz6jl9lhzwafmxx8yp7sx5lkz2xixk2yl5ys5l82am402d1wwb"; depends=[]; }; - moderate_mediation = derive2 { name="moderate.mediation"; version="0.0.8"; sha256="1rzn9s9zxwwwamgjrr925q59h3pywvsl4k0wahm1b5m9cii0g1bl"; depends=[cowplot distr doSNOW earth foreach ggplot2 mvtnorm reshape2 scales]; }; + moderate_mediation = derive2 { name="moderate.mediation"; version="0.0.10"; sha256="1xpyjrp5mxlca9naiz7npa2gqqx9py74w8k4c81djwjxqgn93g60"; depends=[cowplot distr doSNOW earth foreach ggplot2 mvtnorm reshape2 scales]; }; modernVA = derive2 { name="modernVA"; version="0.1.3"; sha256="0hk98m83gpy12yffj4hl3qjl6fc75hsmw8j2577w4j073aml8x6p"; depends=[]; }; moderndive = derive2 { name="moderndive"; version="0.5.5"; sha256="0bgq6wsyyi6nsxqqh2k3zsmk64pfvb57z8pzk8ych3xih491hzlm"; depends=[broom dplyr formula_tools ggplot2 glue infer janitor knitr magrittr rlang stringr tibble]; }; modest = derive2 { name="modest"; version="0.3-1"; sha256="07rs014hdcabp2n0gg14pz2gmqgbw38vjv7a80vkzzh3601hxqws"; depends=[knitr rhandsontable shiny shinyBS]; }; @@ -13862,13 +14089,13 @@ in with self; { modmarg = derive2 { name="modmarg"; version="0.9.6"; sha256="1l57sqhv1xm5g3z9rdlhkkq6gpbn7a3z8bk4dhvzm44xcfv8hi3i"; depends=[]; }; modnets = derive2 { name="modnets"; version="0.9.0"; sha256="01mh7sbgq3796h6ciih5xww8hm0xn8975jv0784yw15hxhzfchci"; depends=[abind corpcor ggplot2 glinternet glmnet gridExtra gtools igraph interactionTest leaps lme4 lmerTest Matrix mvtnorm pbapply plyr psych qgraph reshape2 systemfit]; }; modopt_matlab = derive2 { name="modopt.matlab"; version="1.0-2"; sha256="0g5mswalv4y7p1k3n8a6qf7wb072m4bjq2ml2j83dz2j2bmvygsd"; depends=[ROI ROI_plugin_glpk ROI_plugin_quadprog]; }; - modsem = derive2 { name="modsem"; version="0.1.0"; sha256="1blww1n3kr994s793nmwmcbw4vihzcsg8lyrkma1mxpf3a8c4w7w"; depends=[dplyr lavaan MplusAutomation nlsem purrr R6 Rcpp rlang stringr]; }; + modsem = derive2 { name="modsem"; version="0.1.4"; sha256="06abbk34blacwf7w38fxjh88l26v7wcpg8svmj76ll2pssybxv8r"; depends=[dplyr gaussquad ggplot2 lavaan MplusAutomation mvnfast mvtnorm nlme purrr R6 Rcpp RcppArmadillo rlang stringr]; }; moduleColor = derive2 { name="moduleColor"; version="1.8-4"; sha256="0p45cc21vxjgjn91n0s09l20mf4a8vrkh1d9i27ndn5msrpwn15k"; depends=[dynamicTreeCut impute]; }; modules = derive2 { name="modules"; version="0.13.0"; sha256="1z67nyjxcvz8hrmzbj2igvb43lgrn7s977r7wmfjdnr7cvr44fsm"; depends=[]; }; moexer = derive2 { name="moexer"; version="0.3.0"; sha256="09jr2vhj00k1cv1a0ki68mkd3mhky3smxwkaxw2m2d0h8w34jsyi"; depends=[assertthat cli dplyr ggplot2 glue httr jsonlite lubridate purrr readr rlang stringr tibble]; }; mogavs = derive2 { name="mogavs"; version="1.1.0"; sha256="0lhmwdv991bv7j8k066jr7ii94w60ydjpf5pzmv8jlblf3w2pr02"; depends=[cvTools]; }; mojson = derive2 { name="mojson"; version="0.1"; sha256="077c92jhizpvg5gdwq1zb0d74m743l5qylj6df8hhgyvahswnhnq"; depends=[compareDF iterators magrittr RJSONIO stringr tidyr]; }; - mokken = derive2 { name="mokken"; version="3.1.0"; sha256="1lm5wjczk6ibma3jxvj8pnc7n7zdb40sn692w958p7q6xmqd25nd"; depends=[poLCA Rcpp]; }; + mokken = derive2 { name="mokken"; version="3.1.1"; sha256="0jnc3gsa4qfl4f6pg42m3mqncz0dgmdlx5jwhr0ck4gy02rpjv59"; depends=[poLCA Rcpp]; }; molaR = derive2 { name="molaR"; version="5.3"; sha256="01l68a4jsp0dlylnp9ij1db0q4510l38jlql787bi6ah07xwf8zq"; depends=[alphahull pracma rgl Rvcg]; }; mombf = derive2 { name="mombf"; version="3.5.4"; sha256="0pyq8jlx36075b77p5kalq5fn0y8f3s7l8crn3gvpjmp9shqv22y"; depends=[dplyr glasso glmnet intervals Matrix mclust mgcv mvtnorm ncvreg pracma Rcpp RcppArmadillo sparseMatrixStats survival]; }; momentchi2 = derive2 { name="momentchi2"; version="0.1.5"; sha256="1fv0jmwws4mkl9dsaybfpj29ncvqx2idsijgwz2qjblcg309a6k9"; depends=[]; }; @@ -13878,7 +14105,7 @@ in with self; { monaco = derive2 { name="monaco"; version="0.2.2"; sha256="109m9rvy39bp7j3jj8y6qdr4dran0qqvcx267mvil9c8ipxr89ms"; depends=[htmltools htmlwidgets rstudioapi shiny]; }; monashtipr = derive2 { name="monashtipr"; version="0.1.0"; sha256="050xa9ghhf5xy76vndry7rhqn3hn0lhz6wjwz9vxk6mcfy5j2wq5"; depends=[glue httr lifecycle magrittr purrr rlang rvest xml2]; }; mondate = derive2 { name="mondate"; version="1.0"; sha256="1spz3xv450mw0i984hjp6r4lk653nmjawf9cipv9z7isc4zv3ac3"; depends=[]; }; - mongolite = derive2 { name="mongolite"; version="2.7.3"; sha256="0ddzxqcp756yl9jn690bnzn54cb51i2vg3ciyc88sn1yms1vkfnm"; depends=[jsonlite mime openssl]; }; + mongolite = derive2 { name="mongolite"; version="2.8.0"; sha256="0hmh7rvzjrmmq0rxs510lw0829h4fqrfhpszi7sz48zl2yp85zwn"; depends=[jsonlite mime openssl]; }; mongopipe = derive2 { name="mongopipe"; version="0.1.1"; sha256="081l6d1kwh30wq5kwz9dd2a9221x9139x1xbvfiqixwv0g9sjjy0"; depends=[jsonlite magrittr rlang]; }; monitOS = derive2 { name="monitOS"; version="0.1.5"; sha256="0hdyxb1f2hy3fjbmjf60xnb0x61cga047g007jr9rpb5cimnpk7b"; depends=[glue shiny shinydashboard]; }; monitoR = derive2 { name="monitoR"; version="1.0.7"; sha256="1h1g0m1j13mz37xxwck4s7a0bfqvi0nrzfw60j7bkzaah8zxcc9n"; depends=[tuneR]; }; @@ -13895,10 +14122,10 @@ in with self; { monreg = derive2 { name="monreg"; version="0.1.4.1"; sha256="1i0dxv6azb6x2i7yd9w0254b50qgiidccrn5jn6rqvb5y3dj2rn1"; depends=[]; }; moodef = derive2 { name="moodef"; version="1.1.0"; sha256="03crry7lkk04nm6vh9fgzmyq27xvzs4c8nal1j46bbrkb8i984bq"; depends=[blastula glue magick purrr readr readxl snakecase tibble tidyr xlsx xml2]; }; moodleR = derive2 { name="moodleR"; version="1.0.1"; sha256="0wbrnbs03i6xzyhq82d75yjryfqfl11k55sj9h0j9f7z46dq7glp"; depends=[anytime cli config DBI dplyr ggplot2 ggwordcloud glue lifecycle rlang RMariaDB RPostgres RSQLite scales stringr tidytext usethis]; }; - moodlequizR = derive2 { name="moodlequizR"; version="2.1.0"; sha256="0riwdmf0hmmywdi5zib8zwjfmifvlrfjm10amryzyrwj5jj74689"; depends=[base64 mvtnorm shiny]; }; + moodlequizR = derive2 { name="moodlequizR"; version="2.1.1"; sha256="1bigckdga0jqn0qx5y2x0g74g1ln2hmsdyrjvfmp0cvmscr9w271"; depends=[base64 mvtnorm NMcalc shiny]; }; moonBook = derive2 { name="moonBook"; version="0.3.1"; sha256="1ml4vvm0mvrprpyi0l50aw38brx18bk2qny4gybmkvlbakalz9bx"; depends=[crayon magrittr nortest sjmisc stringr survival]; }; moose = derive2 { name="moose"; version="0.0.1"; sha256="06zjg3dbb4ascnbi3k2cpzswi2mybdbm55d3d5zj17bpa6j0j4cz"; depends=[]; }; - mop = derive2 { name="mop"; version="0.1.1"; sha256="0vi9ff1mmpz1ihkmvddfwxh3x5zrdxbc3m2drnpsifil3sg2d9x8"; depends=[doSNOW foreach Rcpp snow terra]; }; + mop = derive2 { name="mop"; version="0.1.2"; sha256="1x17mnh2lrgkqr1nzhk5dxmwpv9812i3ryvlspqhbrfadj3s76l7"; depends=[doSNOW foreach Rcpp snow terra]; }; mopac = derive2 { name="mopac"; version="0.1.0"; sha256="07ljy6rwicyrv20l7zyxq2lb7qqfpl5mpv834m2n5c4air7sy23m"; depends=[]; }; moreparty = derive2 { name="moreparty"; version="0.4"; sha256="0zny9bffj8dfl6i76ylrcgrbfbawk6aksdfkn4vf57zg7qfv0yqh"; depends=[datamods DT foreach ggplot2 iml MASS measures party partykit pdp phosphoricons plyr rclipboard rlang shiny shinyWidgets varImp vip]; }; morepls = derive2 { name="morepls"; version="0.1"; sha256="14rpzq9833b5idf8jzx83rdmy3w7bk44iafpf5ynlnvz7lyc96fv"; depends=[ggplot2 ggrepel pls rlang]; }; @@ -13908,6 +14135,7 @@ in with self; { morphemepiece_data = derive2 { name="morphemepiece.data"; version="1.2.0"; sha256="1fs1g5vv5qwrab0cj5wff4r9skiaa5mwfawa2j32skga6niaqydz"; depends=[]; }; morpheus = derive2 { name="morpheus"; version="1.0-4"; sha256="0y9immrs87yghp0j1h0vp1fhiah5wddfj6pj2hgcqch1imxprhy7"; depends=[jointDiag MASS pracma]; }; morphomap = derive2 { name="morphomap"; version="1.5"; sha256="0kin6jvg3vlsbga0zr34nnq1zixicw7vsphiw45aifyfbnwiw0av"; depends=[Arothron colorRamps DescTools geometry lattice mgcv Morpho oce rgl Rvcg sp]; }; + morrowplots = derive2 { name="morrowplots"; version="0.1.0"; sha256="09kpsarbv32cylr0qp067m184lnj95p50ayi49w7sgwrs70xdanb"; depends=[]; }; morse = derive2 { name="morse"; version="3.3.2"; sha256="0534k96fhfdkfr3dh6q85fmsqqld7xv1zxvikwcb6z6by3nr9cpp"; depends=[coda deSolve dplyr epitools ggplot2 gridExtra magrittr reshape2 rjags tibble tidyr zoo]; }; mort = derive2 { name="mort"; version="0.0.1"; sha256="09z5j2kknm8jk9153hxkyw5wk08bl2733jjdgy3g0iwna6fl5wrr"; depends=[lubridate rlang]; }; mortAAR = derive2 { name="mortAAR"; version="1.1.6"; sha256="1n3s704k2lqpcbzk8rqa28jcqz37g2bdjkj6x1bygcbfdic2z0dc"; depends=[magrittr Rdpack reshape2 rlang tibble]; }; @@ -13929,7 +14157,7 @@ in with self; { mousetrap = derive2 { name="mousetrap"; version="3.2.3"; sha256="05dxbzwghm8gj6jwwy9wyz0xwyrj614x7db00zlb3gwz1kkyd9sz"; depends=[cstab diptest dplyr fastcluster fields ggplot2 lifecycle magrittr pracma psych RColorBrewer Rcpp rlang scales tidyr]; }; movMF = derive2 { name="movMF"; version="0.2-8"; sha256="1rxi0qk5lg4nyhsbmpdkfj9ygnhx8zdkamb6s5hyjgw5z6lm6ni6"; depends=[clue skmeans slam]; }; move = derive2 { name="move"; version="4.2.4"; sha256="1i6qyx4i8vb2g7i8c2hwjia81m2wd3pyvp6hf6f64j4lcrnafqz7"; depends=[geosphere httr memoise raster Rcpp sp terra xml2]; }; - move2 = derive2 { name="move2"; version="0.2.7"; sha256="1r6xz7848g3fykm4l4iqf08ylyi9sg25y37h3iwcaj4zsdpj28l4"; depends=[assertthat bit64 cli dplyr rlang sf tibble tidyselect units vctrs vroom]; }; + move2 = derive2 { name="move2"; version="0.3.0"; sha256="0ms6s0znjdrf7sfs7ydy6jfic39xi8fbd4r89z3scks7lhm0q1qb"; depends=[assertthat bit64 cli dplyr rlang sf tibble tidyselect units vctrs vroom]; }; moveHMM = derive2 { name="moveHMM"; version="1.9"; sha256="0dq6p13rfv0dryl323zqc0ix12vzn0qaykb9qnxiipwvj0j3qmz2"; depends=[boot CircStats geosphere ggmap ggplot2 MASS numDeriv Rcpp RcppArmadillo sp]; }; moveWindSpeed = derive2 { name="moveWindSpeed"; version="0.2.4"; sha256="0gj8qivwgxh9xzyfldb5hqmd8qi2q9xcazdl9iz39fxvwdshravz"; depends=[move Rcpp]; }; movecost = derive2 { name="movecost"; version="2.1"; sha256="1rq0q8myszcssdxn77lrf7z6yisc5318k32qxaj98rpggr7pfs93"; depends=[chron elevatr gdistance Matrix raster sf sp terra]; }; @@ -13939,8 +14167,9 @@ in with self; { mp = derive2 { name="mp"; version="0.4.1"; sha256="0awvwqwb25q47j14b450k1k5mh2yzwhn7gizjv5j7lyiamk30iwq"; depends=[Rcpp RcppArmadillo]; }; mpae = derive2 { name="mpae"; version="0.1.2"; sha256="0a6fbnqvp0fhbni0qivnrcdmbvlzy6biv5qgk9d13ydqaz15vbms"; depends=[caret RcmdrMisc]; }; mpath = derive2 { name="mpath"; version="0.4-2.25"; sha256="1131bmp0jqz846snjbg57pd8kmn2jynz4xsck119qxspclw476ab"; depends=[bst doParallel foreach glmnet MASS numDeriv pamr pscl WeightSVM]; }; - mpathsenser = derive2 { name="mpathsenser"; version="1.2.2"; sha256="04yhhwphkrsbrlmalzknf7n4x1kc3pfjpsz4zkhj4g1h7ajviq5j"; depends=[DBI dbplyr dplyr furrr jsonlite lifecycle lubridate purrr rlang RSQLite tibble tidyr]; }; + mpathsenser = derive2 { name="mpathsenser"; version="1.2.3"; sha256="12hhcw76gn7mfd3xjsb7an7bwz95any8l89pglrk0bmj8iwhsns2"; depends=[DBI dbplyr dplyr furrr jsonlite lifecycle lubridate purrr rlang RSQLite tibble tidyr]; }; mpindex = derive2 { name="mpindex"; version="0.2.1"; sha256="1csza6krcjclp98b9wj424vkmq5jfg2pglqrsp72pwagpas4dsg7"; depends=[dplyr jsonlite openxlsx purrr stringr tibble tidyr]; }; + mpitbR = derive2 { name="mpitbR"; version="1.0.0"; sha256="01p82d0dzjlq3b0zyg25i7fh6l0amj55kcavcysqsjy2i0352fvb"; depends=[purrr survey]; }; mplot = derive2 { name="mplot"; version="1.0.6"; sha256="15cmwk4lphxy5p3azy9lwhij76127h9g4g1j1sv59mbqvrqid0sk"; depends=[bestglm doParallel doRNG dplyr foreach ggplot2 glmnet googleVis leaps magrittr plyr reshape2 scales shiny shinydashboard tidyr]; }; mplusParallel_automation = derive2 { name="mplusParallel.automation"; version="0.0.1.1"; sha256="012zbd09vqln1xb8lj6akiv1nyhiayiwiwbk8q70yv1mfpj5jgpm"; depends=[dplyr furrr future MplusAutomation]; }; mpm = derive2 { name="mpm"; version="1.0-23"; sha256="1jpv2ddmw7aarqbbyfys1yb840arw33319wnny3v2hk84hldmayj"; depends=[KernSmooth MASS]; }; @@ -13961,14 +14190,14 @@ in with self; { mra = derive2 { name="mra"; version="2.16.11"; sha256="0268msdy4cs2ifpagmwiabi6aav54ckn214ai18aqv2h97hmixw0"; depends=[]; }; mratios = derive2 { name="mratios"; version="1.4.2"; sha256="18pi0dks0qmw0gv76yqm4gvxdqrcvr25j1vb8k4mkp5p35kzkzff"; depends=[multcomp mvtnorm survival survPresmooth]; }; mrbayes = derive2 { name="mrbayes"; version="0.5.1"; sha256="11n3d18di01vmwqs5a0i1h8839aammzbcavi1jk58bmrwb3l771j"; depends=[BH plyr Rcpp RcppEigen rstan rstantools StanHeaders]; }; - mrbin = derive2 { name="mrbin"; version="1.7.4"; sha256="11k7k88ax9jpad32nbv52hkdrsh1px1aid3j54gbmvhf3kbqasmd"; depends=[]; }; + mrbin = derive2 { name="mrbin"; version="1.7.5"; sha256="1pa6acqry480xf2hng10m2i3wlh9k5rxfxl8zarlpcczg8pb1pv2"; depends=[]; }; mrbsizeR = derive2 { name="mrbsizeR"; version="1.3"; sha256="150ipzlkfzl3dpl4pkjdnrcxr82x9pb2rzhmgl3f02xd35x6am5z"; depends=[fields maps Rcpp]; }; mrct = derive2 { name="mrct"; version="0.0.1.0"; sha256="0sgdkkg7x3zly7s35gz7mz79wrwlvnrp8mm7rabqs2lw7lc93lza"; depends=[fda fdapace ggplot2 Rdpack reshape2 robustbase]; }; mrds = derive2 { name="mrds"; version="2.3.0"; sha256="1arp1nk393wbbvasvsp3mb08lbvl3y38bw06sxyk148za3lnhkhq"; depends=[mgcv numDeriv optimx Rsolnp]; }; mreg = derive2 { name="mreg"; version="1.2.1"; sha256="1j958jkibjlvjh0nwbwmqk7imcv3srhnzg28gs9j5p8xhyx12i0f"; depends=[]; }; mrf = derive2 { name="mrf"; version="0.1.6"; sha256="0jqpx0ng0l8f7y941awpi82yqbv8ir0sixiw6zdkqpj82d9a7j9m"; depends=[DEoptim forecast limSolve monmlp nnfor]; }; mrf2d = derive2 { name="mrf2d"; version="1.0"; sha256="0fmxn178bkw77iz51bnjxala9xmhs44km57m8msvlw0k69sddyif"; depends=[dplyr ggplot2 Rcpp RcppArmadillo Rdpack tidyr]; }; - mrfDepth = derive2 { name="mrfDepth"; version="1.0.16"; sha256="1xxq8in957zk04n4zha05p65y0h72gvfgmbqdv7b6cmwdmmms3hj"; depends=[abind geometry ggplot2 matrixStats Rcpp RcppArmadillo RcppEigen reshape2]; }; + mrfDepth = derive2 { name="mrfDepth"; version="1.0.17"; sha256="05k7pzjry3dd7api52wlybl7k83jq0v6a306sdl9wcsqv95lw0mc"; depends=[abind geometry ggplot2 matrixStats Rcpp RcppArmadillo RcppEigen reshape2]; }; mrfse = derive2 { name="mrfse"; version="0.4.1"; sha256="1kk6j7x4z4vaiwnd2mv2brzd1z7g4kyxxylxf31971i6klnsn4zb"; depends=[gtools Rcpp Rfast]; }; mrgsim_parallel = derive2 { name="mrgsim.parallel"; version="0.2.1"; sha256="074c47fkwy5n9x89dswi3ybnck1f0rlbyad6by32jyslw8bz76ln"; depends=[callr dplyr fst future future_apply mrgsolve]; }; mrgsim_sa = derive2 { name="mrgsim.sa"; version="0.2.0"; sha256="1ag6zxfyrcm1lipab6kpjbphvbamgyv3wgz8yf0qdj5dy0ra06hy"; depends=[assertthat dplyr ggplot2 glue mrgsolve patchwork purrr rlang tibble tidyr tidyselect withr]; }; @@ -13977,14 +14206,13 @@ in with self; { mritc = derive2 { name="mritc"; version="0.5-3"; sha256="1bpnm2qzq67dgjxsa4wxn51f4a4cxal5r6abgs3m7p5a9a16jmjp"; depends=[lattice misc3d oro_nifti]; }; mro = derive2 { name="mro"; version="0.1.1"; sha256="00gc2hd8q5hb2xrswclcqqw1gxl83zmpma6bhsggg3kppsw1dpjv"; depends=[MASS matrixcalc]; }; mrregression = derive2 { name="mrregression"; version="1.0.0"; sha256="1yy2sjs0b67bqyggzypp2g7x4fdmi86jx2nbcp2n7hcf9cdacysi"; depends=[data_table Rcpp]; }; - ms_sev = derive2 { name="ms.sev"; version="1.0.4"; sha256="1sr2rgiskgwjhwif70qj6ga8i8kg4bh342hff66b2a54rxrchmw5"; depends=[]; }; msBP = derive2 { name="msBP"; version="1.4-1"; sha256="1n833ghqh9n5m2qx8njsq5njbcap67y1v71a0vm1p2igh0f8b54i"; depends=[]; }; msSPChelpR = derive2 { name="msSPChelpR"; version="0.9.1"; sha256="0m2cijzdgxq3f0ncqvk8klb2hvndm5rzl4swwh62wck12n7z250g"; depends=[cli dplyr lubridate magrittr purrr rlang sjlabelled stringr tidyr tidyselect tidytable]; }; msaFACE = derive2 { name="msaFACE"; version="0.1.0"; sha256="1lh8crz507nlddm946lmn73xbnsh4cs0kg238ysnsvxs726c83fs"; depends=[]; }; msaR = derive2 { name="msaR"; version="0.6.0"; sha256="12d6vql85d1mzcy889z7pbmldcwwmzijimcr9frm12ahmka81byx"; depends=[ape htmlwidgets]; }; msae = derive2 { name="msae"; version="0.1.5"; sha256="0ra4qj0yvyi4nl492hqj7l6cpyxwm1hq7mm15sip4rk2fm7h0kjf"; depends=[magic]; }; msaeHB = derive2 { name="msaeHB"; version="0.1.0"; sha256="1grmkr146csyim1lpgingjnp4km3sqlpzihln9cpkqaqhvl8rycj"; depends=[coda rjags]; }; - msaenet = derive2 { name="msaenet"; version="3.1.1"; sha256="1lidrw79z7r463zfdbxcjpj6y0s7hhrwypjb13d28jyw8n6ijv3x"; depends=[foreach glmnet Matrix mvtnorm ncvreg survival]; }; + msaenet = derive2 { name="msaenet"; version="3.1.2"; sha256="1gs5mcwdkc3wwaa49liywsrl8454801i6jiylfksyw1rlqlcnz9p"; depends=[foreach glmnet Matrix mvtnorm ncvreg survival]; }; msamp = derive2 { name="msamp"; version="1.0.0"; sha256="0r5m50x8l5dijy7nzcbxl3ipfnkgvaa9r580b6b71ny3madsc8rh"; depends=[]; }; msce = derive2 { name="msce"; version="1.0.1"; sha256="1x9ivc2bjp07pdn15p3qds00m1m00amcg2dfcdjsgbkx9x1kkfab"; depends=[Rcpp RcppParallel]; }; mschart = derive2 { name="mschart"; version="0.4.0"; sha256="0znylmkzqsk9qw640bhqnn4np748s9q1zcwgyavb3b808nfcv6ri"; depends=[cellranger data_table htmltools officer writexl xml2]; }; @@ -13993,8 +14221,8 @@ in with self; { mscstts = derive2 { name="mscstts"; version="0.6.3"; sha256="1yqb9p7404yh9bjjjpy83k7yssvvpn3v9vddy47pgwjv4hbpbq19"; depends=[httr jsonlite tuneR]; }; mscsweblm4r = derive2 { name="mscsweblm4r"; version="0.1.2"; sha256="031s00wpr9zfjpii56m67q1phn05vqlhb8cfzhyf6fbrxvpb8k7n"; depends=[httr jsonlite pander]; }; msd = derive2 { name="msd"; version="0.3.1"; sha256="0n3zg2mwbmazbkk41jv94v28glj38d7f08d3w3xrlnlr9gsqh4sd"; depends=[]; }; - msda = derive2 { name="msda"; version="1.0.3"; sha256="0lq6mqhksd35qpwl6ira72mwdzlpaxiv1wzms441r2fh1j0957dp"; depends=[MASS Matrix]; }; msde = derive2 { name="msde"; version="1.0.5"; sha256="0q2jy5f8r5gfj2w8r0kmbgal3wjk37h62ahhjzbphrd8ghdf7za8"; depends=[Rcpp RcppProgress whisker]; }; + msdrought = derive2 { name="msdrought"; version="0.1.0"; sha256="1h8g8i1f8hynr32c7xiz72ykqd0l4fnh8vl3dhm8agxa8l0ksjpm"; depends=[ggplot2 lubridate quantmod signal xts]; }; mseapca = derive2 { name="mseapca"; version="2.0.3"; sha256="0kmli8dmkv7dacb52dz84plhr4ncagch2kzh61amhga4chwqhwzq"; depends=[loadings XML]; }; msentropy = derive2 { name="msentropy"; version="0.1.4"; sha256="1wn71xqpzs06rnp27ci0lw86blyb25k9xkpkqwdv6656shf21iqp"; depends=[Rcpp]; }; msgpackR = derive2 { name="msgpackR"; version="1.1"; sha256="0a6vm4q1zfy8wlvhl9wfy09ig1iag9fvjasz5w9bll7idky4ldx5"; depends=[]; }; @@ -14021,6 +14249,8 @@ in with self; { mstudentd = derive2 { name="mstudentd"; version="1.0.0"; sha256="03css731hv96nj8y07y4ngzv97fypiqcfynscxw5fx0s05c51331"; depends=[MASS rgl]; }; msu = derive2 { name="msu"; version="0.0.1"; sha256="1vhh9725dbywmzihnmsq1jircpn91r8227j2f76fvma9rwss90p7"; depends=[entropy]; }; mt = derive2 { name="mt"; version="2.0-1.20"; sha256="12r7hs83ijn7vw1qqgfrmd5ff7x6p3hxmaxnr3bjr5h2gd6sj42l"; depends=[class e1071 ellipse lattice latticeExtra MASS pls randomForest]; }; + mtanan = derive2 { name="mtanan"; version="0.0.1"; sha256="10j1p5za9f9g9ygzpljfbnmhp32w6bmx9xwnjl84q32nkvagrmpx"; depends=[]; }; + mtarm = derive2 { name="mtarm"; version="0.1.1"; sha256="1zmqpaw7yirs62xg20vfp6m481089651z5qhr52lqsqy537z2vby"; depends=[coda Formula GIGrvg]; }; mtb = derive2 { name="mtb"; version="0.1.8"; sha256="1xlm3s34y9g4g6nqzm7zwl08j6587qnzmr5xx0fwgiv5mr45jdz4"; depends=[data_table ggplot2 htmltools labeling scales]; }; mtdesign = derive2 { name="mtdesign"; version="0.1.0"; sha256="0fnyw6zcls12b6mmr9pxj3b9vs8pv1ik3h671kmxfgv1k6dwn6b9"; depends=[BH dplyr ggplot2 logger magrittr Rcpp rlang tibble tidyr]; }; mthapower = derive2 { name="mthapower"; version="0.1.1"; sha256="0g6dn0qn7z6qc1gbzspy1n7b803427bc9fv5yqk7j8i1is1p8h94"; depends=[]; }; @@ -14037,13 +14267,14 @@ in with self; { muhaz = derive2 { name="muhaz"; version="1.2.6.4"; sha256="1ddy8ayr4rdhzcipdvxdwd7z5g9hfp0ppacl7xf6f2612cn1185g"; depends=[survival]; }; muir = derive2 { name="muir"; version="0.1.0"; sha256="0h3qaqf549v40ms7c851sspaxzidmdpcj89ycdmfp94b2q3bmz98"; depends=[DiagrammeR dplyr stringr]; }; mulSEM = derive2 { name="mulSEM"; version="1.0"; sha256="00lx8w3xxm7zdwv07pc3z5vsl4l1rj95s9wwil9y55bpf2ih4yp2"; depends=[OpenMx]; }; + mulea = derive2 { name="mulea"; version="1.0.0"; sha256="07rhgf0qiwjxr0ckyizyry0vk33jfl2zh3lqipg0rc6s083shgv3"; depends=[data_table dplyr fgsea ggplot2 ggraph magrittr plyr Rcpp readr rlang scales stringi tibble tidygraph tidyverse]; }; mulgar = derive2 { name="mulgar"; version="1.0.2"; sha256="00yaxi14x7g0pzdj65hgs2xm9m7w1w6xjhparbhcjz1jd34ga30y"; depends=[dplyr geozoo ggplot2 purrr tibble tidyr]; }; mully = derive2 { name="mully"; version="2.1.38"; sha256="1lvyj1kyi9ad2byhc1amrjasc2brv7g4d2i08rf7149vp35cwrsg"; depends=[igraph randomcoloR rgl]; }; mulset = derive2 { name="mulset"; version="1.0.0"; sha256="0pigiy6hfiqh6x4zx6zqn3ykk36s3abzzyb67jdlf4jzc5zhrl9g"; depends=[digest gtools]; }; mult_latent_reg = derive2 { name="mult.latent.reg"; version="0.1.7"; sha256="0lvkysncxjlzlzdy1a7vvcr03sd6vcfqgflgaxxy6k1j9qvx92wf"; depends=[lme4 matrixStats mvtnorm]; }; multDM = derive2 { name="multDM"; version="1.1.4"; sha256="132kqbrg1ism2byhal50j0hr0qqlnd30db9z6vvjc977d03hf41l"; depends=[MTS]; }; multIntTestFunc = derive2 { name="multIntTestFunc"; version="0.2.0"; sha256="0z2wsbhb8lbmb5favqaang3rq4fk6ln9d5spssinzlbpqb04y6nk"; depends=[mvtnorm pracma]; }; - multbxxc = derive2 { name="multbxxc"; version="1.0.1"; sha256="1ip5awjc2ljpy6nsr4y42x0yg4n7lyaxp9kzfjvwp41k9lriz4gm"; depends=[Rcpp RcppArmadillo rmumps]; }; + multbxxc = derive2 { name="multbxxc"; version="1.0.2"; sha256="1g8m3mgqfvqf097rd3v78575gci77gphygjv66n0nlnv06hqrhr1"; depends=[Rcpp RcppArmadillo rmumps]; }; multcomp = derive2 { name="multcomp"; version="1.4-25"; sha256="10njzzxdi3jw5f419s7chcynxkzyqmmvzf7jk7ybdrwrlqhpiylx"; depends=[codetools mvtnorm sandwich survival TH_data]; }; multcompView = derive2 { name="multcompView"; version="0.1-10"; sha256="12mdk12xciq1d3zn94rixahhcah2qq41lvb5n4kzgjaq4yr4kwiq"; depends=[]; }; multe = derive2 { name="multe"; version="1.0.0"; sha256="05hp59lsf0zdbp6lkyf9yq1i0isi68zgqwxxkssgw4r6w5yfh84g"; depends=[nnet]; }; @@ -14060,7 +14291,7 @@ in with self; { multiRDPG = derive2 { name="multiRDPG"; version="1.0.1"; sha256="0r6n148pakixw4caj0zwib8zirgl98lm0mxqmhvmqjh389icskxc"; depends=[]; }; multiROC = derive2 { name="multiROC"; version="1.1.1"; sha256="15ydbxpkdyvsc55di13jvwh9p6dzxc1yj93w1cwsd8jp2y10wsd3"; depends=[boot magrittr zoo]; }; multiUS = derive2 { name="multiUS"; version="1.2.3"; sha256="0wdvrkl6xvk8xpkm9n0hd5pjks3350ms09jrfqnnxyf3dsbs68dc"; depends=[gplots MASS]; }; - multibias = derive2 { name="multibias"; version="1.4.0"; sha256="0zm0hamwrdhqclaqq783lm42smpz6qmwhrrqi4ci3w3r40jllfpf"; depends=[dplyr magrittr rlang]; }; + multibias = derive2 { name="multibias"; version="1.5.0"; sha256="171fag2qx8vbydcajai2dq50l9hrhsrlifrni87b07pzsm6bv7nc"; depends=[dplyr magrittr rlang]; }; multibiasmeta = derive2 { name="multibiasmeta"; version="0.2.2"; sha256="04qnb3l2y86xy8f1j754g8fy6hc1a26rwdznaka789k3dkkckk93"; depends=[dplyr EValue metabias metafor purrr Rdpack rlang robumeta]; }; multibiplotGUI = derive2 { name="multibiplotGUI"; version="1.1"; sha256="08vmdhrn6qqq57q818cqnmsw7qaa4gnw3m5myzp4dc85njgzzi02"; depends=[cluster dendroextras MASS Matrix plotrix rgl shapes tcltk2 tkrplot]; }; multiblock = derive2 { name="multiblock"; version="0.8.8.1"; sha256="0b4xk6pr4ffs44iras74mswligfyrx52fgm5yvcs5f4y94bsd6pp"; depends=[ade4 car lme4 MASS mixlm plotrix pls plsVarSel pracma progress Rcpp RcppEigen RSpectra SSBtools]; }; @@ -14077,15 +14308,14 @@ in with self; { multifear = derive2 { name="multifear"; version="0.1.3"; sha256="0240dk3cqdm9x9y139p5i0gj374f58qxnqw32cii1abhv852ijfm"; depends=[BayesFactor bayestestR bootstrap broom dplyr effectsize effsize esc ez forestplot ggplot2 nlme purrr reshape2 stringr tibble]; }; multifunc = derive2 { name="multifunc"; version="0.9.4"; sha256="0gxgxfh8vmczc7dc4awfmmmwds98kk9d5c9rk1lz1himp19mqsj4"; depends=[broom dplyr magrittr MASS purrr]; }; multifwf = derive2 { name="multifwf"; version="0.2.2"; sha256="1l6z3pzz6g6w1spp1f918jh6w0jm93qyc882rj8jhn1198d2s8nd"; depends=[]; }; - multigraph = derive2 { name="multigraph"; version="0.99"; sha256="0hya5r8ak7vk0sda7flhj69cc87b56sxqwz09x2vfg0z05gxi3il"; depends=[multiplex]; }; + multigraph = derive2 { name="multigraph"; version="0.99-3"; sha256="0q634jsr1m9nzn4g3bcy5dxl26bdzdg6imcym2jifaa29b7m1790"; depends=[multiplex]; }; multigraphr = derive2 { name="multigraphr"; version="0.2.0"; sha256="13ac16zghccdapr0kmkcrj11b0ipgaajdpps867sgk6yqd7pyizx"; depends=[]; }; - multigroup = derive2 { name="multigroup"; version="0.4.5"; sha256="1d3m2c3md9iiv1gfqfyik1xj3fsas85bmf2vbkaks8ljxa42f55k"; depends=[MASS]; }; multilaterals = derive2 { name="multilaterals"; version="1.0"; sha256="11zfdhn6qzqz0n31g23bn40wnfzkjndb753iiqvihirphzb74v5v"; depends=[ape igraph]; }; - multilevLCA = derive2 { name="multilevLCA"; version="1.5"; sha256="10fwcyvq5a820ji2n2m2smd450yw31lqjmd1aaxi7lr30sv7ijv8"; depends=[dplyr foreach klaR magrittr MASS Rcpp RcppArmadillo tidyr]; }; + multilevLCA = derive2 { name="multilevLCA"; version="1.5.1"; sha256="0cf51abcypl3a3xl0lhvb614ja83s6nkcc0glws9x112wwm2dgs4"; depends=[dplyr foreach klaR magrittr MASS Rcpp RcppArmadillo tidyr]; }; multilevel = derive2 { name="multilevel"; version="2.7"; sha256="0ds7q3q2ncldb4iik24xisyxyyv1yv8l1yz7zd7cy036bna1yp5i"; depends=[MASS nlme]; }; multilevelPSA = derive2 { name="multilevelPSA"; version="1.2.5"; sha256="0926jaicdxk846vyfphb2hyg3zan3wal44x1bwamws0zf4flc4hj"; depends=[ggplot2 MASS party plyr PSAgraphics psych reshape xtable]; }; multilevelTools = derive2 { name="multilevelTools"; version="0.1.1"; sha256="01fzx7j0mkb4fr7axv34184w6w5nfsdcr51nscci1mi5b2805x1s"; depends=[cowplot data_table extraoperators ggplot2 JWileymisc lavaan lme4 lmerTest nlme zoo]; }; - multilevelcoda = derive2 { name="multilevelcoda"; version="1.2.3"; sha256="0v499gb26g14c207fqp5z9z0j76q0yk5mgfpmhj35377pib7c14b"; depends=[abind bayesplot bayestestR brms bslib compositions data_table doFuture DT emmeans extraoperators foreach ggplot2 hrbrthemes insight loo plotly shiny]; }; + multilevelcoda = derive2 { name="multilevelcoda"; version="1.3.0"; sha256="1hmnapmcaa1m56afvx3ylikii462fhq8qy64xs0a8gpkg9d5ir0v"; depends=[abind bayesplot bayestestR brms bslib compositions data_table doFuture DT extraoperators foreach future ggplot2 hrbrthemes insight loo plotly shiny shinystan]; }; multilevelmediation = derive2 { name="multilevelmediation"; version="0.3.1"; sha256="0aq38qz4i05sn3qa1f0lwpf57r4aya30i028gfdj66w0nh766pg0"; depends=[brms furrr future matrixcalc MCMCpack nlme parallelly posterior tidyr]; }; multilevelmod = derive2 { name="multilevelmod"; version="1.0.0"; sha256="0sq16w2a0wvxbvca5wknc77lzkdfvr8j71bc0d569hdfm59nrp2k"; depends=[dplyr lme4 parsnip purrr rlang tibble withr]; }; multilinguer = derive2 { name="multilinguer"; version="0.2.4"; sha256="16r8ishisrh5xxjvdqaczqd16fva9fhw7h1sk076if452wwwk3zl"; depends=[askpass rappdirs sys usethis]; }; @@ -14097,14 +14327,14 @@ in with self; { multiness = derive2 { name="multiness"; version="1.0.2"; sha256="08bgjs2mrmsdvha10dr74262yk5ghyflvs8pqbl7bc8aws7lv8f5"; depends=[glmnet Matrix RSpectra]; }; multinet = derive2 { name="multinet"; version="4.1.2"; sha256="0i87r6k6pzr7gbspcq9d101gwnnlwqpr0y4s1dgqsa2abivk0p55"; depends=[igraph RColorBrewer Rcpp]; }; multinets = derive2 { name="multinets"; version="0.2.2"; sha256="1i5jsq1xy0g0l5d1z3hz4gj6inj4rhd6lf2s5xzd5k8ccp5aba8c"; depends=[igraph Rcpp]; }; - multinma = derive2 { name="multinma"; version="0.6.1"; sha256="04vc1669z94gmzy6ldsndsmf386mvxbadxcpv1p2mbsigpppk498"; depends=[bayesplot BH copula dplyr forcats ggdist ggplot2 ggraph glue igraph Matrix purrr randtoolbox Rcpp RcppEigen RcppParallel Rdpack rlang rstan rstantools StanHeaders stringr survival tibble tidyr truncdist]; }; + multinma = derive2 { name="multinma"; version="0.7.1"; sha256="0p0bw7kz1i7bnmwzyzn7gbblpq05rf2axcklppj9h072ysh1x7mn"; depends=[bayesplot BH copula dplyr forcats ggdist ggplot2 ggraph glue igraph Matrix purrr randtoolbox Rcpp RcppEigen RcppParallel Rdpack rlang rstan rstantools StanHeaders stringr survival tibble tidyr truncdist]; }; multinomialLogitMix = derive2 { name="multinomialLogitMix"; version="1.1"; sha256="11mv9xsixcjqv3cq5ay1id3736gzdk192cw2z9khlv1j9bf1x4xh"; depends=[coda doParallel foreach ggplot2 label_switching MASS matrixStats mvtnorm RColorBrewer Rcpp RcppArmadillo]; }; multinomineq = derive2 { name="multinomineq"; version="0.2.6"; sha256="0ip5ax1s7bk98hq9yqvhx0hiawxbac901zw41v0issq302dhvylk"; depends=[coda quadprog Rcpp RcppArmadillo RcppProgress RcppXPtrUtils Rglpk]; }; multiocc = derive2 { name="multiocc"; version="0.2.1"; sha256="1ndwky6rjyb7x0mg2xx5lsxr5yyhg7a9jrwmwryjg6jsw23965qx"; depends=[coda interp MASS tmvtnorm truncnorm]; }; - multipanelfigure = derive2 { name="multipanelfigure"; version="2.1.5"; sha256="1jy23qp49kxn83gnrls6ci247zd430zgbyab1rn7l6ahazzcra72"; depends=[assertive_base assertive_files assertive_numbers ggplot2 gridGraphics gtable magick magrittr stringi]; }; + multipanelfigure = derive2 { name="multipanelfigure"; version="2.1.6"; sha256="0f35hfpd5sxjawpq33bwlabppfy8s7x53p6fmzpxlpdgnw61kg7v"; depends=[ggplot2 gridGraphics gtable magick magrittr stringi]; }; multipleDL = derive2 { name="multipleDL"; version="1.0.0"; sha256="0b8858w0g45xkhschg742kxicd1cp4xhfacn0q3yh17k2fcif7r3"; depends=[BH Rcpp RcppEigen RcppParallel rstan rstantools SparseM StanHeaders]; }; multipleNCC = derive2 { name="multipleNCC"; version="1.2-4"; sha256="0vgldg31mb57l5lig9l4clv060fiwx842adv1qbdirfrpyrg295i"; depends=[mgcv survival]; }; - multipleOutcomes = derive2 { name="multipleOutcomes"; version="0.2"; sha256="0wkfrz8v7sfgwiqlvia2rmiryiwz53n0qzlg05p0sgh90p38w037"; depends=[dplyr ggplot2 mvtnorm tidyr]; }; + multipleOutcomes = derive2 { name="multipleOutcomes"; version="0.4"; sha256="1hdz7nsk8737pdnqf33ggddn23pm488i60w5cpq0qwynck5mk4rh"; depends=[dplyr momentfit numDeriv stringr survival]; }; multiplestressR = derive2 { name="multiplestressR"; version="0.1.1"; sha256="167ch16bdlk4syjbgn1149q1np90w6299ph35p9npdh1zcynm95f"; depends=[ggplot2 patchwork viridis]; }; multiplex = derive2 { name="multiplex"; version="3.1.1"; sha256="0y7bcqdma20ca4a7f20kwrhji7mc1rris31kqfb3ps7zwj9bkp3h"; depends=[]; }; multipol = derive2 { name="multipol"; version="1.0-9"; sha256="0cn6l0f1mn3n2rzsfr6ncc37aqc7ij9a8pkxbxq74j11bib0bhsf"; depends=[abind]; }; @@ -14119,6 +14349,7 @@ in with self; { multitool = derive2 { name="multitool"; version="0.1.4"; sha256="1z8yby5prfmp0p9gia8pmr54sw017rqbpblhxk6qxz3w9vnl4zp8"; depends=[clipr correlation DiagrammeR dplyr flextable furrr future ggdist ggplot2 glue lme4 moments parameters performance purrr rlang stringr tibble tidyr]; }; multivar = derive2 { name="multivar"; version="1.1.0"; sha256="1jyz921m16g24gjmscsz2mi78ng3c5hzhbcankdq9x1i7kdcqawi"; depends=[ggplot2 glmnet MASS Matrix Rcpp RcppArmadillo reshape2 vars]; }; multivariance = derive2 { name="multivariance"; version="2.4.1"; sha256="1jbv1rhdy6jgvyhwz25hry3xmnxfsl8pwf0j4rj9r8rg6ik8rv1w"; depends=[igraph microbenchmark Rcpp]; }; + multivarious = derive2 { name="multivarious"; version="0.2.0"; sha256="1lgb7agfdq4fiwg2c2f6an2bx7krl84n79d7744rc514rgl0klp0"; depends=[chk corpcor fitdistrplus glmnet irlba Matrix matrixStats pls proxy purrr rlang RSpectra rsvd svd]; }; multivator = derive2 { name="multivator"; version="1.1-11"; sha256="1r9v15bg0kyhq5xqzkpj6ilz745q6k3j46zh1n68pf17zmi0k0ww"; depends=[emulator mathjaxr mvtnorm]; }; multiverse = derive2 { name="multiverse"; version="0.6.1"; sha256="0l3h4pg450brw27n0jhc3k5fsl57kczxsmzzs3ffj9lwrpnvvn7z"; depends=[berryFunctions collections dplyr evaluate formatR future_apply knitr magrittr purrr R6 rlang rstudioapi tibble tidyr tidyselect]; }; multiview = derive2 { name="multiview"; version="0.8"; sha256="1kf16w4wbj84383hvqxhrqlvghyra22p7k9vs03axqxqkhl8krhz"; depends=[glmnet Matrix RColorBrewer Rcpp RcppEigen survival]; }; @@ -14127,7 +14358,7 @@ in with self; { multiwayvcov = derive2 { name="multiwayvcov"; version="1.2.3"; sha256="1znsmca16jac8s5z0j64cck27pvf88anm1mfblabqchqqcz1ykfc"; depends=[boot sandwich]; }; multxpert = derive2 { name="multxpert"; version="0.1.1"; sha256="1lq5lgdjaaacipkjqxz6jxsm6b8zfbjsf7rs135a7n6w7qh35pvw"; depends=[mvtnorm]; }; munfold = derive2 { name="munfold"; version="0.3.5"; sha256="17zizx9r0f8dxb7dkgn1nn0fp7ydy6r155p1zfz0v93jc26lc1hb"; depends=[MASS memisc]; }; - munsell = derive2 { name="munsell"; version="0.5.0"; sha256="16g1fzisbpqb15yh3pqf3iia4csppva5dnv1z88x9dg263xskwyh"; depends=[colorspace]; }; + munsell = derive2 { name="munsell"; version="0.5.1"; sha256="19i9jjawlqciw4n4h99a4sm0lbc77la3pqyzjvnwsrh7qjdgv8h3"; depends=[colorspace]; }; munsellinterpol = derive2 { name="munsellinterpol"; version="3.0-0"; sha256="15314dr42sikw8i1qdi5rw8r52whgxsda6m2jbldxdc67vlwmcwd"; depends=[rootSolve spacesRGB spacesXYZ]; }; murphydiagram = derive2 { name="murphydiagram"; version="0.12.2"; sha256="0f699cdfsl4f9w9f18cxkdlq1vyhsv83ynl6ck0r3wwh8f1zsmnd"; depends=[]; }; musclesyneRgies = derive2 { name="musclesyneRgies"; version="1.2.5"; sha256="1d99icy9hal9q716wpcl1xz2qjhqpshnxp761yqln0wina0241rj"; depends=[FNN ggplot2 gridExtra plyr proxy reshape2 signal umap]; }; @@ -14155,10 +14386,11 @@ in with self; { mvShapiroTest = derive2 { name="mvShapiroTest"; version="1.0"; sha256="0zcv5l28gwipkmymk12l4wcj9v047pr8k8q5avljdrs2a37f74v1"; depends=[]; }; mvabund = derive2 { name="mvabund"; version="4.2.1"; sha256="01kss9dx4an1ir5zs46jypvhj8sdc8wcs00i1223ai09av4lcsgd"; depends=[MASS Rcpp RcppGSL statmod tweedie]; }; mvbutils = derive2 { name="mvbutils"; version="2.8.232"; sha256="0awd0jy492ha321c20kmmgl20kqphdmrmswakc0rq6h8z9d55kdg"; depends=[]; }; - mvcauchy = derive2 { name="mvcauchy"; version="1.0"; sha256="1szrzlyg1bsdbkmix4b8z301m5i7z38lba1wv1a8cw7v5hv74kjx"; depends=[Rfast Rfast2]; }; + mvcauchy = derive2 { name="mvcauchy"; version="1.1"; sha256="0vnf5q71hkj6nqljm73rcmvr7ir6zhp4qwrjvi49d6zxpdrs8yx1"; depends=[Rfast Rfast2]; }; mvctm = derive2 { name="mvctm"; version="1.2"; sha256="0810bmk748cvbls4djspqvkk65j605djqicqg4rkwy2a799l3rgc"; depends=[Formula MNM nlme quantreg Rfit SpatialNP]; }; mvdalab = derive2 { name="mvdalab"; version="1.7"; sha256="0iblpg5yi9ig4hi6ff84m9pfgyrpkyfc9m9m98dpngpbhxfqnvhq"; depends=[car ggplot2 MASS moments penalized plyr reshape2 sn]; }; mverse = derive2 { name="mverse"; version="0.1.0"; sha256="1qj77s98j05j8d1k1w3h56c7z2i1j973mflhklxhb3xxc7plyk3y"; depends=[broom cowplot dplyr ggplot2 ggraph igraph magrittr multiverse rlang stringr tidyr tidyselect]; }; + mvgam = derive2 { name="mvgam"; version="1.1.1"; sha256="1hgrhly2wsrmsgbd888sx38hyl44bgicw54z8bgf4i54n4mmw8ph"; depends=[bayesplot brms dplyr ggplot2 insight loo magrittr marginaleffects Matrix matrixStats mgcv mvnfast pbapply posterior purrr Rcpp RcppArmadillo rlang rstan rstantools scoringRules smooth zoo]; }; mvgb = derive2 { name="mvgb"; version="0.0.4"; sha256="1928mfbhlhwh03xiwlf5mvn6yp0i95rlknqb132b5hdsd3y5xin3"; depends=[]; }; mvglmmRank = derive2 { name="mvglmmRank"; version="1.2-4"; sha256="09mkjx3xrpnv681d07z91g60fq7bna6142b2hh9xvh5nxcqixdnf"; depends=[MASS Matrix numDeriv]; }; mvhist = derive2 { name="mvhist"; version="1.1"; sha256="057yhkivcfjm9yazx0x8rn2xysgyc6y7nlcxpjl00yfi7wcjpmlh"; depends=[mvmesh rcdd rgl SimplicialCubature]; }; @@ -14173,7 +14405,7 @@ in with self; { mvnimpute = derive2 { name="mvnimpute"; version="1.0.1"; sha256="0131dm8ma7qrzqsfdkdcp1vh0jcz3am3mry6x96m8fm3npi4dldz"; depends=[ggplot2 LaplacesDemon MASS Rcpp RcppArmadillo RcppDist reshape2 rlang truncnorm]; }; mvnmle = derive2 { name="mvnmle"; version="0.1-11.2"; sha256="06ysl7ff0gy5iiggaicrk1x3sav86iz45zks6ybd3k9516qjjn39"; depends=[]; }; mvnormalTest = derive2 { name="mvnormalTest"; version="1.0.0"; sha256="1hbapcmj1rzrdzlbkay94f3r2388sk60zizh48vbbkc83qlm7xbr"; depends=[copula moments nortest]; }; - mvnormtest = derive2 { name="mvnormtest"; version="0.1-9"; sha256="1iaxjwp7bgxhaa4xqvgqb61316mq2fb0452d0pabhmbxkvmvdnj6"; depends=[]; }; + mvnormtest = derive2 { name="mvnormtest"; version="0.1-9-3"; sha256="1hxxy08ldm2dczjfb34q1xk8yfs54pdishq4hnws8xy0cjh4xngg"; depends=[]; }; mvnpermute = derive2 { name="mvnpermute"; version="1.0.1"; sha256="0jszhq2mfqm7k7zvmn1m286gnafpng6ybmvmwzmzzwla9f7sacjx"; depends=[]; }; mvord = derive2 { name="mvord"; version="1.2.2"; sha256="15ln55a1lxpfka4lva84nsznbl8wgi95hvbr8wisqh05c5940s3x"; depends=[BB dfoptim MASS Matrix minqa mnormt mvtnorm numDeriv optimx pbivnorm ucminf]; }; mvoutlier = derive2 { name="mvoutlier"; version="2.1.1"; sha256="1ll6zsy8svcsb3h60p0z2zpbgn919j9w0mamsdvvzi87dyy4hars"; depends=[robustbase sgeostat]; }; @@ -14183,17 +14415,17 @@ in with self; { mvs = derive2 { name="mvs"; version="1.0.2"; sha256="1p0782c940chysr4sk746gl9gjxzx7rx8xyxbkdp3y6z0904ib5w"; depends=[foreach glmnet]; }; mvst = derive2 { name="mvst"; version="1.1.1"; sha256="0zfy7lgghmx6ziybxp3w1dar49bhnpzxjmdkzdnkcicrc4yjdl7w"; depends=[MCMCpack mnormt mvtnorm]; }; mvtmeta = derive2 { name="mvtmeta"; version="1.1"; sha256="0s0s5922c5rs8cqk100nci3akqnhbvibm2n2gn8049v3qcyfajyb"; depends=[gtools]; }; - mvtnorm = derive2 { name="mvtnorm"; version="1.2-4"; sha256="1zws7myh61622v46gir6bs0dpyp6siz0hx7lrsvymshn02xqg0l4"; depends=[]; }; + mvtnorm = derive2 { name="mvtnorm"; version="1.2-5"; sha256="19pdwdkhc7bv6r9xkzpxmpgmz7mvsrzxfvj6jy02hpjdlaiq4y4y"; depends=[]; }; mvtsplot = derive2 { name="mvtsplot"; version="1.0-4"; sha256="1391m4r58hbaqbq46isi15jx6vhx7frdspbs1ippbpw7rsanch9w"; depends=[RColorBrewer]; }; mwTensor = derive2 { name="mwTensor"; version="1.1.0"; sha256="113asdl3hm1kk31x29x89bz3zxccrhbh64xl2fcgds1mkw0gr3mn"; depends=[ccTensor igraph iTensor MASS nnTensor rTensor]; }; mwa = derive2 { name="mwa"; version="0.4.4"; sha256="0f994xpylqhhwwr3rv0y5y68989ssy7q4pb3hawq0ww0l3wj9lmd"; depends=[cem MASS rJava]; }; - mwcsr = derive2 { name="mwcsr"; version="0.1.8"; sha256="0vyvxw708c2m832jwsnfd8jfig5qbnixfl85frpch1c9qqp3238p"; depends=[igraph Rcpp]; }; mwlaxeref = derive2 { name="mwlaxeref"; version="0.0.1"; sha256="1rpm2l10xipggva5ghlvg0h9w0nvwkpc9a2ai1j4skp3f30zgczz"; depends=[dplyr rlang]; }; mwshiny = derive2 { name="mwshiny"; version="2.1.0"; sha256="0c1a0d9qnaszffhzanmk31mdxqi7j3rn6bk7a3dwg4bq1da3rlgl"; depends=[htmltools shiny]; }; + mxfda = derive2 { name="mxfda"; version="0.2.1"; sha256="0msfkyxdyy8p3rwxqyzqy9jmsjnv3ra7qspm1cfql3azpmhs8k4s"; depends=[dplyr ggplot2 lifecycle magrittr mgcv purrr refund reshape2 rlang SimDesign SpatEntropy spatstat_explore spatstat_geom tidyr]; }; mxkssd = derive2 { name="mxkssd"; version="1.2"; sha256="19zz5y5gz84a7qicaj3v2j6l558vr6w8lcy67b3kmkq64mnnirda"; depends=[]; }; mxmmod = derive2 { name="mxmmod"; version="1.1.0"; sha256="0x4m6y4ngb3vm9xpvwvn1zcbch2fhz8pb267hg2sb3kk5m504xxq"; depends=[OpenMx]; }; mxnorm = derive2 { name="mxnorm"; version="1.0.3"; sha256="01845m5h4rd38n0fll2k2d9hw6j9dbjgs7kmwy30g9lkffvv73s8"; depends=[caret data_table dplyr e1071 fda fossil ggplot2 glue KernSmooth kSamples lme4 magrittr psych reticulate rlang stringr tidyr uwot]; }; - mxsem = derive2 { name="mxsem"; version="0.0.8"; sha256="1a1fg5463vrcqgjz2yr5r26s937jdg1i3pq27kp0zwsa9fa3i5na"; depends=[dplyr OpenMx Rcpp]; }; + mxsem = derive2 { name="mxsem"; version="0.0.9"; sha256="1n8dwb41gr2z8sjrkf0f75mcrvigr5p9p399s5bbi74kf9dsw0hr"; depends=[dplyr OpenMx Rcpp]; }; myCRAN = derive2 { name="myCRAN"; version="1.1"; sha256="1b92jyk2nwlqx0sx05b1gj3ivy33rjz1394gazl0xm98jj1c1vkx"; depends=[cranlogs pkgsearch]; }; myClim = derive2 { name="myClim"; version="1.1.0"; sha256="1wy5yzx4z2c9n9bq3imih339h20wigwy7120kk3wclpfxvhfi2b4"; depends=[data_table dplyr ggforce ggplot2 lubridate plotly progress purrr stringr tibble tidyr viridis vroom zoo]; }; myTAI = derive2 { name="myTAI"; version="0.9.3"; sha256="0fd6srvwzqir8zif56cnyi02c952fgc67xzc17wn7xvmvljfvh4x"; depends=[cpp11 doParallel dplyr edgeR fitdistrplus foreach ggplot2 gridExtra nortest RColorBrewer Rcpp RcppArmadillo readr reshape2 scales taxize tibble]; }; @@ -14201,14 +14433,15 @@ in with self; { mycor = derive2 { name="mycor"; version="0.1.1"; sha256="00hqmvga22bv43833s974s7ky7lbry3r2bb5kza7kvkn1p6773rg"; depends=[lattice]; }; mzipmed = derive2 { name="mzipmed"; version="1.4.0"; sha256="18k7ffq9mkslkxz4j0xj3xh0050gkysp2cls6w7825warflgclwz"; depends=[MASS matrixStats sandwich]; }; n1qn1 = derive2 { name="n1qn1"; version="6.0.1-11"; sha256="17p48wm0wcw46lk9382yd9xpzx4rygdjyrbfdi6xnph1k5phjxpj"; depends=[Rcpp RcppArmadillo]; }; - nCopula = derive2 { name="nCopula"; version="0.1.1"; sha256="03qbfvx0lg9prg52fk1jxar2bng2x6scac4g2c64kvp6vmf6x4mv"; depends=[copula Deriv stringi stringr]; }; nFactors = derive2 { name="nFactors"; version="2.4.1.1"; sha256="08gydk231zijw3inp6d3hnc5mz0zywi4vzlvqb4jmibhv0hncdxv"; depends=[lattice MASS psych]; }; + nFunNN = derive2 { name="nFunNN"; version="1.0"; sha256="07ivkql315nd68x4z7amnpbkznj3d6x8msrjfnmj2g5y8dgwmmny"; depends=[fda torch]; }; nJira = derive2 { name="nJira"; version="0.1.1"; sha256="0vh167kxljp68f0dx307wl6fp8nlp34vgrkr815z30mhx03p8j9r"; depends=[httr plyr rjson]; }; nLTT = derive2 { name="nLTT"; version="1.4.9"; sha256="1h87iwzy988jx1i70nxv24c3gjirrga5c3fw5al86m7qr1nz4sps"; depends=[ape coda testit]; }; nRegression = derive2 { name="nRegression"; version="0.5.1"; sha256="0d02zgb25g67vgbilwvx7qqqaznzbhqfnllp41fn4rr5ysrc01l0"; depends=[covr data_table simitation]; }; na_tools = derive2 { name="na.tools"; version="0.3.1"; sha256="1lbzsckfg297n85kzbin65x1l6qgg9l50hd3xi2gflxc7n2xb8bw"; depends=[]; }; naaccr = derive2 { name="naaccr"; version="2.0.2"; sha256="1j30fb7qvxzpx0y7hq8sbqvszwjfnc4r2g0j8885fmn2wxvcgzdx"; depends=[data_table stringi XML]; }; nabor = derive2 { name="nabor"; version="0.5.0"; sha256="1nj39cdfwrmhgsi3cq8imxv3n6xzc1v6dzdb2cf2hybjk368v4s7"; depends=[BH Rcpp RcppEigen]; }; + nadiv = derive2 { name="nadiv"; version="2.18.0"; sha256="0n8hwf8mic479knq3dp6l49aw6injsk5f9jfsxl2qs5q4wsqsx76"; depends=[Matrix]; }; naflex = derive2 { name="naflex"; version="0.1.0"; sha256="18fqfhm6p38z4h8dznac5v8yz53n86cw2x6ma29kvcbvdp4r3yd2"; depends=[]; }; naijR = derive2 { name="naijR"; version="0.6.0"; sha256="1108fz4rhckmb2d9s63rjb44dpfazhvhsqprgx82akbssr7xf9br"; depends=[cli lifecycle mapdata maps RColorBrewer rlang sf stringi]; }; naive = derive2 { name="naive"; version="1.2.3"; sha256="0ha54lc6g6yvh5g3kw5hdp2l7y2xi85b3ills3w1x092gma1q2cy"; depends=[entropy fANCOVA fastDummies ggplot2 greybox imputeTS lubridate modeest moments philentropy purrr readr Rfast scales tictoc]; }; @@ -14221,9 +14454,10 @@ in with self; { nametagger = derive2 { name="nametagger"; version="0.1.3"; sha256="1m6g8fx9fvd8zzvv4c9dh1dw63dkvl9i5mz8rqgvwqgqdvvvw1vi"; depends=[Rcpp]; }; nandb = derive2 { name="nandb"; version="2.1.0"; sha256="1rbn4nibjzvwpccpmqn84w9a167f1avyl18kjlapy5dhafvixgbz"; depends=[assertthat autothresholdr BBmisc checkmate detrendr dplyr filesstrings ggplot2 glue ijtiff magrittr purrr Rcpp reshape2 rlang stringr viridis withr]; }; naniar = derive2 { name="naniar"; version="1.1.0"; sha256="0i3gijr1l7hbcp75cyj26pxmm493lnvasl8aba9vv4w8lz1lck59"; depends=[cli dplyr forcats ggplot2 glue lifecycle magrittr norm purrr rlang tibble tidyr UpSetR vctrs viridis visdat]; }; - nanoarrow = derive2 { name="nanoarrow"; version="0.4.0.1"; sha256="16vspbc31585f5wys634i4nyr43f6fzj6fgss8f5rdvvf73d2h4p"; depends=[]; }; - nanonext = derive2 { name="nanonext"; version="0.13.2"; sha256="1ylf8qrsapzkyprpxhrdj4nzfdgpb33srbc2kj732dcpzh6gs5ld"; depends=[]; }; - nanostringr = derive2 { name="nanostringr"; version="0.4.1"; sha256="1sivaycgg1j3q9iapy2nq7mp8cak316rgn475sv7pa57ig6g9b7b"; depends=[assertthat ccaPP dplyr purrr rlang tidyr]; }; + nanoarrow = derive2 { name="nanoarrow"; version="0.5.0.1"; sha256="0rd2nd5b3zhfb4i8gygp9nrn9hbvzqqra0rzdp4msr11r4nkgh15"; depends=[]; }; + nanonext = derive2 { name="nanonext"; version="1.1.0"; sha256="1j0xiww92kasy3ks3mrwxqk8gbfwqzyqnmanbcjswa4xiycqzsgv"; depends=[later]; }; + nanoparquet = derive2 { name="nanoparquet"; version="0.3.0"; sha256="1q7msg1jc6mggggzm3sfcq7s6n8x0llmb7qbggqci4zai45dpj6b"; depends=[]; }; + nanostringr = derive2 { name="nanostringr"; version="0.4.2"; sha256="0a6avc8gzq0mdswlsmp9i8pzk83cw2ziwrxfjphqa42akafzd63k"; depends=[assertthat ccaPP dplyr purrr rlang tidyr]; }; nanotime = derive2 { name="nanotime"; version="0.3.7"; sha256="05fbdhbax6k1glidmgl0zjc7y7v1ppbpz4422q3jmxmfack7hwd7"; depends=[bit64 Rcpp RcppCCTZ RcppDate zoo]; }; naptanr = derive2 { name="naptanr"; version="1.0.1"; sha256="074pxm1c8k24b3gbn3ibbwpsixbmjq3wx9agxg3ljflny2s6hhqp"; depends=[data_table httr]; }; naptime = derive2 { name="naptime"; version="1.3.0"; sha256="1cadfv5sdsmz61kf96hf2gbnghf24q40g5c3h9b8prvkxslap691"; depends=[lubridate]; }; @@ -14231,7 +14465,7 @@ in with self; { narray = derive2 { name="narray"; version="0.5.1"; sha256="0vpx1fl24ba1c5x3bw0n8bx5yp77gsqybaxgbq6mj6by29ggq73l"; depends=[progress Rcpp stringr]; }; naryn = derive2 { name="naryn"; version="2.6.26"; sha256="0v41cmmg19w2rfyndxzsv3k9h1clfc0p2py3mq47zl79qv79vqbr"; depends=[dplyr glue lifecycle magrittr purrr stringr tidyr yaml]; }; nasadata = derive2 { name="nasadata"; version="0.9.0"; sha256="0y88qdy8c1y0prsajxic5vdqfixv9knjsbhw3vbfac8wv3a69bjl"; depends=[dplyr jsonlite plyr png]; }; - nasapower = derive2 { name="nasapower"; version="4.2.0"; sha256="1lrrpqjhq6s3bj905zkakri2l8igczchmvqp8lm5r93v1s8kbxyf"; depends=[cli crul jsonlite lubridate readr rlang tibble]; }; + nasapower = derive2 { name="nasapower"; version="4.2.1"; sha256="064n7yd5qkaqx1q5s16bm6fvkjlqjknrkkcpin5hz2nishmkqqwb"; depends=[cli crul jsonlite lubridate readr rlang tibble]; }; nasaweather = derive2 { name="nasaweather"; version="0.1"; sha256="05pqrsf2vmkzc7l4jvvqbi8wf9f46854y73q2gilag62s85vm9xb"; depends=[]; }; naspaclust = derive2 { name="naspaclust"; version="0.2.1"; sha256="1p4ilv2z5140h4kdix2w1v32vz1n8v33wq0fhc8n8mi7baknhd1i"; depends=[beepr rdist Rdpack stabledist]; }; nat = derive2 { name="nat"; version="1.8.24"; sha256="1r3p5vwk96d93z8qm1lrb6g16l9fm2gcwy4h4n8clmxnpnimkj3k"; depends=[digest filehash igraph nabor nat_utils plyr rgl yaml]; }; @@ -14256,20 +14490,21 @@ in with self; { nberwp = derive2 { name="nberwp"; version="1.2.0"; sha256="0v1y51rmm0h3w0v5y97wprhdhyc14r4iprdpkmdh8q9ajj1ds1c0"; depends=[]; }; nbfar = derive2 { name="nbfar"; version="0.1"; sha256="1gr9q83ff950x2lcyv9apsnjah4kpi8805mci9m0s3gvr7llpjq4"; depends=[glmnet magrittr MASS mpath Rcpp RcppArmadillo RcppParallel rrpack]; }; nblR = derive2 { name="nblR"; version="0.0.4"; sha256="1p1m1jml7grpjfp5qibffm3dx8zz37h216bpcwybm293naprmbfr"; depends=[cli magrittr]; }; - nbpMatching = derive2 { name="nbpMatching"; version="1.5.4"; sha256="0f7avg06lr5a1yixrl6mhcs98ywa91qbfkc7qlz2pxzpc1v13ffb"; depends=[Hmisc MASS]; }; + nbpMatching = derive2 { name="nbpMatching"; version="1.5.5"; sha256="0r9q4vkqsrb1m0kzwgih797r3shy04fd185z3rwdi3w4cs03xydp"; depends=[Hmisc MASS]; }; nc = derive2 { name="nc"; version="2024.2.21"; sha256="00m2128n3mpl9i77qcdrr49swpj2lr5wif8xxkfimhm3fciw2fgh"; depends=[data_table]; }; ncappc = derive2 { name="ncappc"; version="0.3.0"; sha256="0bf00iskrd3x43839bwn957mi3qvm2dhcmqa7hl1ib0gp2r1cnzx"; depends=[bookdown Cairo dplyr ggplot2 gridExtra gtable knitr lazyeval magrittr PopED purrr readr reshape2 rlang rmarkdown scales tibble tidyr xtable]; }; ncar = derive2 { name="ncar"; version="0.5.0"; sha256="1cyf06bml2dfdilvyzhal42s56a70fd88wk5zkmrgblckvfyl3cg"; depends=[NonCompart rtf]; }; ncbit = derive2 { name="ncbit"; version="2013.03.29.1"; sha256="01352byijhwhcb7jji7bf5cm6v2yfz925f8wbivrx12x0c65fzw4"; depends=[]; }; ncdf4 = derive2 { name="ncdf4"; version="1.22"; sha256="040jpcgsb98s6knch0z3f3f5fpmlwks1grpvb9k8s02c9w0a5adr"; depends=[]; }; ncdf4_helpers = derive2 { name="ncdf4.helpers"; version="0.3-6"; sha256="0qnm41rbxb6v7aqh1mdkjhcc2rhs4wg6wmrllldzd99mzz8slv1r"; depends=[abind ncdf4 PCICt]; }; + ncdfCF = derive2 { name="ncdfCF"; version="0.1.1"; sha256="1q6q36zml4lm3yznsb245ll80a1mdgykmrk6chq0ymn64azbd73l"; depends=[CFtime RNetCDF stringr]; }; ncdfgeom = derive2 { name="ncdfgeom"; version="1.1.6"; sha256="1scbcysklqi761xbjxkdb54m3k31hps58lyg2l01m9pk117ywkz5"; depends=[areal dplyr ncmeta RNetCDF sf stars]; }; ncdump = derive2 { name="ncdump"; version="0.0.3"; sha256="09g98mzpky32z41jf23ahzhyv34l34y1gqq99j2hl4pqlvvhxs9i"; depends=[dplyr ncdf4]; }; ncf = derive2 { name="ncf"; version="1.3-2"; sha256="1lqswih19g76aswnf6xygficzf7ri3yayqicifj8cqx8iwvrk91y"; depends=[]; }; - ncmeta = derive2 { name="ncmeta"; version="0.3.6"; sha256="0pk5wn0hmf5n1bgx96xighpmr2kkka3fgl6was9z2rsr0k981mc2"; depends=[dplyr rlang RNetCDF tibble tidyr]; }; + ncmeta = derive2 { name="ncmeta"; version="0.4.0"; sha256="1aamxs3yza1hsgvkp6740lv1dc21a87mzl06n6w3zxkjshri020w"; depends=[CFtime dplyr rlang RNetCDF tibble tidyr]; }; ncodeR = derive2 { name="ncodeR"; version="0.2.0.1"; sha256="1pxiqxhq2rxs8rxxhw1hbds7z2qkf7ws26a8wsbw815yn6jm10n8"; depends=[cli R6 rhoR]; }; ncpen = derive2 { name="ncpen"; version="1.0.0"; sha256="0vl4cbrsifr5s1691gacmp0lk3aqyq0yfafafzv6g3zygi4igrsa"; depends=[Rcpp RcppArmadillo]; }; - ncvreg = derive2 { name="ncvreg"; version="3.14.1"; sha256="1q6klmyf7gbzkinjhv83k8gn95jgn3vkc927wsmffqjqc3d71rd7"; depends=[]; }; + ncvreg = derive2 { name="ncvreg"; version="3.14.2"; sha256="1hbidxb9f6ygvjkvcdr1b642akgz25kzamnav55snjny82fmfspv"; depends=[]; }; nda = derive2 { name="nda"; version="0.1.13"; sha256="1v3nfjq0v0vjv3871qsx7sxl5b6p74187cvacj3jfjyxbzghb8pc"; depends=[energy igraph MASS Matrix ppcor psych visNetwork]; }; ndi = derive2 { name="ndi"; version="0.1.5"; sha256="0gfjh6wsdcbjw6xyyr863gc7rxridm84d6x05b0yk105yxhi5vpk"; depends=[car dplyr MASS Matrix psych sf stringr tidycensus tidyr]; }; ndjson = derive2 { name="ndjson"; version="0.9.0"; sha256="18j5bibranvbv84hvbsg6glmvhfancdsf2w6j99n3nw53bcgb12d"; depends=[data_table Rcpp tibble]; }; @@ -14285,7 +14520,7 @@ in with self; { needmining = derive2 { name="needmining"; version="0.1.1"; sha256="0qsj0ihjchrnl4s44rpsizbcz033z00dmzvic2y1msv0bnfawl6p"; depends=[randomForest rtweet SnowballC SparseM stringr tau tm]; }; needs = derive2 { name="needs"; version="0.0.3"; sha256="16dkjpijz3rz7kd5ggxsdg55iwd42nll1vk6g5ix4xdbqrx6cp9x"; depends=[]; }; negenes = derive2 { name="negenes"; version="1.0-12"; sha256="0b82822vl86gni0pv5f6pjfzmks35i7q2rqkhgyb9z9c677g991q"; depends=[]; }; - negligible = derive2 { name="negligible"; version="0.1.6"; sha256="0igx64jfxv2dracfg220dkhds6sanjxjsnn9nmax5kr00hzrgfwx"; depends=[DescTools dplyr e1071 fungible ggplot2 lavaan MBESS nptest rockchalk tidyr WRS2]; }; + negligible = derive2 { name="negligible"; version="0.1.8"; sha256="0ammn1zfzy2q4vd20bj40ix58lz5rkjl7csyp98hq6mq2h091gmv"; depends=[DescTools dplyr e1071 ez fungible ggplot2 lavaan MBESS nptest rockchalk WRS2]; }; neighbours = derive2 { name="neighbours"; version="0.1-3"; sha256="0q0d8504kjvsgik7pdhsgh9n1xszxa7p4mzpxajki2ym0x7hqx9k"; depends=[]; }; neighbr = derive2 { name="neighbr"; version="1.0.3"; sha256="1rmglfjmx6bfd4w1cpx4rvp7hy2vqvcamy854h5dq0l3kwk4pjcm"; depends=[]; }; neldermead = derive2 { name="neldermead"; version="1.0-12"; sha256="0ws2knrq3b3icv6fzimypzwvzvqf0sayi2ndhacn6lk4snms5pm3"; depends=[optimbase optimsimplex]; }; @@ -14295,11 +14530,11 @@ in with self; { neo4jshell = derive2 { name="neo4jshell"; version="0.1.2"; sha256="0dkdg8ljyv7pi6zkpsq5akkl35vrhkr78xvc2ky99gwjsr0z77hf"; depends=[fs magrittr R_utils ssh sys]; }; neo4r = derive2 { name="neo4r"; version="0.1.1"; sha256="0s4rjhn2mc8ca4p8p474a83dc277vrf7l968xwxkiac0d4fgbra7"; depends=[attempt data_table glue httr igraph jsonlite magrittr purrr R6 rlang rstudioapi shiny tibble tidyr tidyselect]; }; neojags = derive2 { name="neojags"; version="0.1.4"; sha256="10z5x78a3mjy5jbxlzfzsixp6w8y0v0mkxnwf5bq3rk5dgnga0g0"; depends=[coda rjags runjags]; }; - neonOS = derive2 { name="neonOS"; version="1.0.0"; sha256="11jgsf8c7rjfdbn9qljirzwvpnn4wckid4p4syx6py3dqjb4r19f"; depends=[curl data_table httr jsonlite]; }; - neonPlantEcology = derive2 { name="neonPlantEcology"; version="1.5.0"; sha256="1g3j07jrmh9hdalnlbkrawk5gqyhs6y8yhnl1wi7lp6m2vvcgr15"; depends=[data_table dplyr dtplyr ggplot2 ggpubr lubridate neonUtilities sf stringr tibble tidyr vegan]; }; - neonUtilities = derive2 { name="neonUtilities"; version="2.4.1"; sha256="1jrda57yi64lgr8c5z5lchbdin2fs47pb9q4rr6fwh5rzm6hf10x"; depends=[curl data_table downloader httr jsonlite pbapply R_utils stringr tidyr]; }; - neonstore = derive2 { name="neonstore"; version="0.5.0"; sha256="1hj45bfx4m8afnggrhq47wxhvc37pkr87ilizxx2xa1f0vrwp8i0"; depends=[cachem DBI duckdb duckdbfs glue httr memoise progress R_utils thor vroom zip]; }; - neotoma2 = derive2 { name="neotoma2"; version="1.0.3"; sha256="1a7qcpypbr7vakrzl039ckv3cdy040gl6m3jpya1s284r30b12fx"; depends=[assertthat dplyr geojsonsf gtools httr jsonlite leaflet lubridate magrittr progress purrr rlang sf stringr tidyr uuid wk]; }; + neonOS = derive2 { name="neonOS"; version="1.1.0"; sha256="0qqm5g6h67v96kv8sjgiq15v0vkg5m7q96hkhhi3m5c4gkkj8wi0"; depends=[curl data_table httr jsonlite]; }; + neonPlantEcology = derive2 { name="neonPlantEcology"; version="1.6.1"; sha256="0z41a5dsbvxkfx0yhqpqdzlzh7b4k4af54yj1rdpgp6gzwfd32nw"; depends=[data_table dplyr dtplyr ggplot2 ggpubr lubridate neonUtilities sf stringr tibble tidyr vegan]; }; + neonSoilFlux = derive2 { name="neonSoilFlux"; version="1.0.0"; sha256="0mi03k83q7hr1i9wi91dkbg4a6kydpxxxs5cihr6h47jaz2m87aj"; depends=[dplyr ggplot2 lubridate neonUtilities purrr stringr tibble tidyr tidyselect]; }; + neonUtilities = derive2 { name="neonUtilities"; version="2.4.2"; sha256="0mx0pj6zxi0kqn2bqhyrn4bwg9jl151lv3fhk7llswivxp8fzd1p"; depends=[curl data_table downloader httr jsonlite pbapply R_utils stringr tidyr]; }; + neonstore = derive2 { name="neonstore"; version="0.5.1"; sha256="16xbvqk02ihqv2lilgsmp777v93m2m6px9wcmpg8lm8xhrbyj4gr"; depends=[cachem DBI duckdb duckdbfs glue httr memoise progress R_utils thor vroom zip]; }; nephro = derive2 { name="nephro"; version="1.4"; sha256="12rrc46dniw09a6402ns868h9c6f0grpsk3wv29z4l92338waiwb"; depends=[]; }; neptune = derive2 { name="neptune"; version="0.2.3"; sha256="04d5rdcvnik9rj58npvs5z1r6ngs9hzc24wzix64czcynkkvkad0"; depends=[ggplot2 htmlwidgets plotly reticulate rstudioapi this_path]; }; nesRdata = derive2 { name="nesRdata"; version="0.3.1"; sha256="1lxvg11g8nizfn8sghirq2749fs9i4w1wiaz3v1djqbkzqcqfrcj"; depends=[dataone dplyr purrr rappdirs readr]; }; @@ -14317,8 +14552,8 @@ in with self; { netShiny = derive2 { name="netShiny"; version="1.0"; sha256="1k6dmhkjf29ww31c15jms0yxwyiqq1z7a9115zwbg620cjd3m6fm"; depends=[colourpicker DT future future_callr ggplot2 ggVennDiagram igraph ipc magrittr Matrix netgwas plotly promises readxl shiny shinyBS shinycssloaders shinydashboard shinyjs shinyscreenshot shinyWidgets visNetwork]; }; netUtils = derive2 { name="netUtils"; version="0.8.2"; sha256="0laha093wxkvs06wh2hsmyxypn89n7vlh183zw6k26d67vl15a6j"; depends=[igraph Rcpp RcppArmadillo]; }; netassoc = derive2 { name="netassoc"; version="0.7.0"; sha256="0hbyg31r9sjp0dyxlbsbw7r1kb1dwr0apilsw8saf1vlqwsiasga"; depends=[corpcor huge igraph infotheo vegan]; }; - netchain = derive2 { name="netchain"; version="0.2.0"; sha256="1skpf1n6a17mjkcxqpl6vrskk04yvqa0v4n2zw9x5r1h46q9m6qk"; depends=[gtools igraph Matrix Rcpp stringr]; }; netcmc = derive2 { name="netcmc"; version="1.0.2"; sha256="0w5xnnfglg0nm59wwqh2dpwkz0zlly3r2997wncf5whz5j4vcy88"; depends=[coda ggplot2 MASS MCMCpack mvtnorm Rcpp RcppArmadillo RcppProgress]; }; + netcom = derive2 { name="netcom"; version="2.1.7"; sha256="1zbpr0bm9g0890isd4x6gfpk6lg5z823q5lym6mhww9gk7b4xl9q"; depends=[clue doParallel dplyr expm foreach GenSA ggfortify ggplot2 ggraph igraph magrittr Matrix optimx pdist pracma reshape2 rlang tibble vegan]; }; netcontrol = derive2 { name="netcontrol"; version="0.1"; sha256="1gskb728ycnhz9a9g9ghm0dz3ajf3dzgyv23bsk9i01wj9hrxhc0"; depends=[expm MASS Matrix pracma Rcpp RcppArmadillo Rdpack]; }; netcox = derive2 { name="netcox"; version="1.0.1"; sha256="04biaynmvqrilp0kdxw55b990j7iqnvn8gr07dhzm9f7r9sr7xk6"; depends=[glmnet Rcpp survival]; }; netdiffuseR = derive2 { name="netdiffuseR"; version="1.22.6"; sha256="0f4d0x03970iqxkbr0r9jm8gf28r79rimfnfr1djcajzihxaj7l6"; depends=[boot igraph MASS MatchIt Matrix network networkDynamic Rcpp RcppArmadillo sna SparseM viridisLite]; }; @@ -14351,9 +14586,9 @@ in with self; { networktools = derive2 { name="networktools"; version="1.5.2"; sha256="0w2q5ncni5nv7lg9vm3bpxj64pg0f6w0rxknli0dy1q0asq4aw47"; depends=[cocor eigenmodel ggplot2 gridExtra igraph psych qgraph R_utils RColorBrewer reshape2 smacof wordcloud]; }; networktree = derive2 { name="networktree"; version="1.0.1"; sha256="0hkrqpx7b6sxalw1qyrncck70mx6p5gr57mf558l5mlqi52v7hg0"; depends=[Formula gridBase Matrix mvtnorm partykit qgraph reshape2]; }; neuRosim = derive2 { name="neuRosim"; version="0.2-14"; sha256="1ndgpx748q7flqbb0bbjzdnynd5vp85k6wi4karxgvgihsxn9hkz"; depends=[deSolve]; }; - neuralGAM = derive2 { name="neuralGAM"; version="1.1.0"; sha256="10v47gqr2y7md9j4807zsnckavlv4p9lggj5ywkizhwgmdfn4bxx"; depends=[formula_tools ggplot2 gridExtra keras magrittr reticulate tensorflow]; }; + neuralGAM = derive2 { name="neuralGAM"; version="1.1.1"; sha256="1dnqbz83px2sd58i6jfsp1nimm6k2ffsas270rsc1av5nr6zd4wh"; depends=[formula_tools ggplot2 gridExtra keras magrittr reticulate tensorflow]; }; neuralnet = derive2 { name="neuralnet"; version="1.44.2"; sha256="09l808vgjh059a3f94vgsprfyp5c1hrbjn6i1cn34cxnbljwsrjz"; depends=[Deriv MASS]; }; - neurobase = derive2 { name="neurobase"; version="1.32.3"; sha256="0jg4fspqmdbrisxxwbpql5kv9am3d02m5j2dp8305p8dl0wz5vyj"; depends=[abind matrixStats oro_nifti R_utils RNifti]; }; + neurobase = derive2 { name="neurobase"; version="1.32.4"; sha256="0jgf7zv4j2r09is0r8fkizgy0mz3c0iyldhw8f1fgys4gwzia7cc"; depends=[abind matrixStats oro_nifti R_utils RNifti]; }; neuroblastoma = derive2 { name="neuroblastoma"; version="2023.9.3"; sha256="18n2ysrxb47wn5xpf906i5hn84f45r3ijla7sravyrsh8lbx6xih"; depends=[]; }; neurocInstall = derive2 { name="neurocInstall"; version="0.12.0"; sha256="1fkb6ji9gigqdjl50hbgdgfidqpjgqlh1aidf6vn4qnfr92bsvqf"; depends=[devtools]; }; neurohcp = derive2 { name="neurohcp"; version="0.9.0"; sha256="02z0lhmw2mr2fk8d8wp7nfcrfl8izds68zskm5j0xfabfb4dwkbx"; depends=[aws_s3 base64enc digest httr xml2]; }; @@ -14365,17 +14600,18 @@ in with self; { neverhpfilter = derive2 { name="neverhpfilter"; version="0.4-0"; sha256="097nfz30pf4bd95l943ccsvndni0n8c6gpcdk5dv02802mcg0h81"; depends=[xts zoo]; }; new_dist = derive2 { name="new.dist"; version="0.1.1"; sha256="1zkmwqhamrw7g4d1hffsyhcsjf0z0nmmgnixc7wny0qqpmyqlb2n"; depends=[expint pracma VGAM]; }; newFocus = derive2 { name="newFocus"; version="1.1"; sha256="0j7wl4yf4dnz4vbbnhsk39w9zqbnad2lhxwqbns1plhdd02hzsfr"; depends=[ctgt]; }; + newIMVC = derive2 { name="newIMVC"; version="0.1.0"; sha256="1zxdrrc4w93a3r2zibip7s8h75mjf0ir3wpy310s83cas2nywqvx"; depends=[CompQuadForm expm GGMridge limma quantreg]; }; newTestSurvRec = derive2 { name="newTestSurvRec"; version="1.0.2"; sha256="06p782md33wqh5wa1735yg5i01d42p74kl7h5qhqs9cd732ls6pz"; depends=[]; }; newsanchor = derive2 { name="newsanchor"; version="0.1.1"; sha256="1s8qhq9jk5gnsimnvy7kdayya0ks0ly309l7zxm5rafj5x7k5vwn"; depends=[askpass devtools httr jsonlite lubridate tidyr xml2]; }; newscatcheR = derive2 { name="newscatcheR"; version="0.1.2"; sha256="18r9lmg9q6fj0ggnpqggqywsbycblsdc42mdcpc2abzp98dsvww9"; depends=[tidyRSS]; }; - newsmap = derive2 { name="newsmap"; version="0.8.3"; sha256="08gdjszasfc62yz7q4s6a5971v0c0ddncryyfq1blpi6qqikjyhj"; depends=[Matrix quanteda quanteda_textstats stringi]; }; + newsmap = derive2 { name="newsmap"; version="0.9.0"; sha256="103if7yh378c91bwq4j22p3krg00hwzah5wi1pjnni65yjjg2bqa"; depends=[Matrix quanteda quanteda_textstats stringi]; }; newsmd = derive2 { name="newsmd"; version="0.5.1"; sha256="06iq628ysfbaawhx5yxkxh8a9d3nmzq87n80l88kj84k1lg1s5ph"; depends=[R6]; }; nextGenShinyApps = derive2 { name="nextGenShinyApps"; version="2.0"; sha256="0994y5qnhxp23c6m08mgr9pp44jcm277qwxzq4fnsdy0gndcjrcw"; depends=[htmltools quickcode shiny]; }; nexus = derive2 { name="nexus"; version="0.2.0"; sha256="0dyhgd18kz7yfdziycxkmqb58zx99fr99wxp3dfjfxip537sx1sn"; depends=[arkhe dimensio isopleuros MASS]; }; nfer = derive2 { name="nfer"; version="1.1.3"; sha256="0s19ks4ildxqdbm4nv40f6c0rs1a6h9vx46654k8n0q18bgia448"; depends=[]; }; nfl4th = derive2 { name="nfl4th"; version="1.0.4"; sha256="1ilvchs7g26ks6wgb8s8av0pm10s161fqiahcwbsm5xfy9bh8q78"; depends=[backports curl dplyr glue httr janitor jsonlite magrittr mgcv nflfastR nflreadr purrr rlang stringr tibble tidyr tidyselect xgboost]; }; nflfastR = derive2 { name="nflfastR"; version="4.6.1"; sha256="0b9pn53kzgf0bni98j6f06piwp21wxkm15k9hvhbq0g3x9sj0zqg"; depends=[cli curl data_table dplyr fastrmodels furrr future glue janitor mgcv nflreadr progressr rlang stringr tibble tidyr tidyselect xgboost]; }; - nflplotR = derive2 { name="nflplotR"; version="1.3.0"; sha256="11rmfwgpa5r0n98r4prngbfgdvk55vxkzp7pl5qlddhbh5jjcl9y"; depends=[cachem cli data_table ggpath ggplot2 gt lifecycle magick memoise nflreadr rappdirs rlang scales]; }; + nflplotR = derive2 { name="nflplotR"; version="1.3.1"; sha256="1j6vhd1ysanc47ixa56gj0dgxqhiwdkbvkcmhdpkwc3zs5c78lzn"; depends=[cachem cli data_table ggpath ggplot2 gt lifecycle magick memoise nflreadr rappdirs rlang scales]; }; nflreadr = derive2 { name="nflreadr"; version="1.4.0"; sha256="1437nzvqj0w5p3wxb0zfwjkn34ssd4q9zbsw0lmrbs0afifaf6dd"; depends=[cachem cli curl data_table glue memoise rappdirs rlang]; }; nflseedR = derive2 { name="nflseedR"; version="1.2.0"; sha256="0nk6264alv0d8d1wj7xqk4m57rl1w185jj5qj58d9hwiy2wmzvqz"; depends=[cli data_table dplyr furrr future gsubfn magrittr nflreadr progressr purrr rlang tibble tidyr]; }; nflverse = derive2 { name="nflverse"; version="1.0.3"; sha256="1pamkg80b83gb5ab3zshh36xsr31ihv6qbh1aa42m6k4g1wk5g3r"; depends=[cli crayon magrittr nfl4th nflfastR nflplotR nflreadr nflseedR rlang rstudioapi]; }; @@ -14385,12 +14621,12 @@ in with self; { ngramr = derive2 { name="ngramr"; version="1.9.3"; sha256="0iiaw8w3z8r45i129r78jwj4yicrp3lfzp7im6qmfn9k6v2bpsfv"; depends=[cli curl dplyr ggplot2 httr rjson rlang scales stringr textutils tibble tidyr xml2]; }; ngramrr = derive2 { name="ngramrr"; version="0.2.0"; sha256="1p8s4p3h27g647rxx9qjfad5dzbngjbmvhw4gz0jbsmfqrsf72by"; depends=[tau tm]; }; ngspatial = derive2 { name="ngspatial"; version="1.2-2"; sha256="09hdvmbna4m62zv18k5kj9718wzw7p43wnal2j6aa0m5sd2rx9rz"; depends=[batchmeans Rcpp RcppArmadillo]; }; - nhanesA = derive2 { name="nhanesA"; version="1.0"; sha256="18r4cps3z4jg15nxy15g23k044rzhqnxaf679imw6w8sij2a4drc"; depends=[foreign plyr rvest stringr xml2]; }; + nhanesA = derive2 { name="nhanesA"; version="1.1"; sha256="10vbgwz0m94yqjydrylyl699j92yr1f7j9cc23q9v4grg7zspk0b"; depends=[foreign plyr rvest stringr xml2]; }; nhdR = derive2 { name="nhdR"; version="0.6.1"; sha256="1cf3lfkflwbvswdqnp74zrb7ndc2vbm9jj8dny1gqq3x9ciiy8gw"; depends=[curl digest dplyr foreign ggplot2 httr maps memoise purrr rappdirs rlang rvest sf stringr units xml2]; }; - nhdplusTools = derive2 { name="nhdplusTools"; version="1.0.0"; sha256="109gipkpmszipljm19c1f9mrjpf647vk9kyz7dwcpwlra7x21ay3"; depends=[arrow dataRetrieval dplyr fst httr hydroloom jsonlite magrittr mapsf maptiles pbapply R_utils sf tidyr units xml2 zip]; }; + nhdplusTools = derive2 { name="nhdplusTools"; version="1.2.1"; sha256="13jms0cfccydcc5jz2mv6ych8zwsvxf2g6qzspa9vqxyjdq1wzqn"; depends=[arrow dataRetrieval digest dplyr fst httr hydroloom jsonlite magrittr mapsf maptiles memoise pbapply R_utils sf tidyr units xml2 zip]; }; nhlapi = derive2 { name="nhlapi"; version="0.1.4"; sha256="1c5s7fd9agzk20xi8v38dk8ih6lmn8c90mxncyr996bhipgr7vl3"; depends=[jsonlite]; }; nhm = derive2 { name="nhm"; version="0.1.1"; sha256="1xc2kfc4g9f9nmsgm2fk5qhvlghgcyqiz9b5vr34a1x73cs9g0b8"; depends=[deSolve maxLik mvtnorm]; }; - nhppp = derive2 { name="nhppp"; version="0.1.3"; sha256="07arj7i9d51b7v0wk7dpvgy09rzyd3infybhj3x4ipcgp5zh18kj"; depends=[lifecycle rstream]; }; + nhppp = derive2 { name="nhppp"; version="0.1.4"; sha256="0822xcv2yq6f12naphh6d29q0215nwamf342fji6nffj6flfhh8d"; depends=[lifecycle Rcpp rstream]; }; nhs_predict = derive2 { name="nhs.predict"; version="1.4.0"; sha256="0lgyi1v940pjqfpwligw5ml6vagiz8wwsxbr9kfd1j70b5i0kjwd"; depends=[]; }; nhsnumber = derive2 { name="nhsnumber"; version="0.1.2"; sha256="10vm3591gjr13ggnagjkh0v2915yl05mwyphpckimmrrbc3zsdip"; depends=[]; }; nhstplot = derive2 { name="nhstplot"; version="1.3.0"; sha256="162v85h9prl2kcchm219577ljw2an2hjapxyqxiv6xymp06cw4bn"; depends=[ggplot2]; }; @@ -14399,23 +14635,25 @@ in with self; { nic = derive2 { name="nic"; version="0.0.2"; sha256="1bsmwdnkxmpp1wr7w4qmpm1x8vgllif0yqbn4n0k477bzlm9p7m4"; depends=[]; }; nice = derive2 { name="nice"; version="0.4-2"; sha256="0v4vd66kcblm0mq1ri73hs9vv79h03wmh7h60bj7vj1dlf4yzqj5"; depends=[]; }; nicheROVER = derive2 { name="nicheROVER"; version="1.1.2"; sha256="03xal1bm4wfvq6943v1n3d0782yxcmlqjwxj4i0dgr3yi72759x2"; depends=[]; }; + nichetools = derive2 { name="nichetools"; version="0.2.0"; sha256="12hcgqwq74pkf0x4240blb699qnazsls1dsni9arnf9hq06zypdy"; depends=[cli dplyr ellipse lifecycle nicheROVER purrr rlang tibble tidyr]; }; nichevol = derive2 { name="nichevol"; version="0.1.20"; sha256="18c3l9mm4dh0pxpliv2sx7nyijdhmzgcd36xkzclhhh067lxifrs"; depends=[ape castor geiger stringr terra]; }; nieve = derive2 { name="nieve"; version="0.1.3"; sha256="0r1acnb771wvxnpjzgrvxfs8fc6xibgggxk4smhq62nnyjlp0big"; depends=[]; }; nifti_io = derive2 { name="nifti.io"; version="1.0.0"; sha256="03p0gn6id5bkn0qxf7v3splykpi9wpbasrhf2937gp25bsynrpjm"; depends=[]; }; nilde = derive2 { name="nilde"; version="1.1-7"; sha256="014scmwhq9i66i2mhvrb71y6ccv0xzjqfgm2sqff9lzjv9smy2im"; depends=[]; }; nima = derive2 { name="nima"; version="0.6.2"; sha256="0n8r8h1m0v0ssbpv6p32jby49f45qbicwr0awm7x054p48qk49cy"; depends=[assertthat dplyr ggplot2 ggthemes gridExtra gtools scales]; }; - nimble = derive2 { name="nimble"; version="1.1.0"; sha256="16f1ljp6kiirc8kihib4d076k7czjhlh4bavrlhi1nllaf6q5p8b"; depends=[coda igraph numDeriv pracma R6]; }; - nimbleAPT = derive2 { name="nimbleAPT"; version="1.0.4"; sha256="0615fm6sa6nf607ay98r81m0pp8yvydpwzn3972imf87irps2k3l"; depends=[nimble]; }; + nimble = derive2 { name="nimble"; version="1.2.0"; sha256="16mq49fynkq3ki7g4dv5cxc493gi1sh728jaslzxzh1124n645f4"; depends=[coda igraph numDeriv pracma R6]; }; + nimbleAPT = derive2 { name="nimbleAPT"; version="1.0.6"; sha256="17sv1f5dnrp33qfv7gr1s3isvwd79vnfiphjz45c7b4l28h3g2i6"; depends=[nimble]; }; nimbleCarbon = derive2 { name="nimbleCarbon"; version="0.2.5"; sha256="0gqzdiid3x5k8286j3wy31pha76diniyj7si0mzrmq13kw77lsls"; depends=[coda doSNOW foreach nimble rcarbon snow]; }; nimbleEcology = derive2 { name="nimbleEcology"; version="0.4.1"; sha256="1z4byxsana1fa2y7qhmiqbb8ana6zbas0cmbgcc703mqh1642jb2"; depends=[nimble]; }; nimbleHMC = derive2 { name="nimbleHMC"; version="0.2.1"; sha256="1id9pqs1phc2vf8mwz2gdgirhmki4shw8h77828nbj10b3zik3zj"; depends=[nimble]; }; - nimbleNoBounds = derive2 { name="nimbleNoBounds"; version="1.0.2"; sha256="1sbaj1ayvqn86av045h5n7rrlw5r3zyk1i6v5v9sjm3f9pxyffgw"; depends=[nimble]; }; + nimbleNoBounds = derive2 { name="nimbleNoBounds"; version="1.0.3"; sha256="16dl6gh5lgih4wcfb31vkbzn9knmjicfzi1bkw0j62ah39vhhdh9"; depends=[nimble]; }; nimbleSCR = derive2 { name="nimbleSCR"; version="0.2.1"; sha256="1gyc93isivvq0b8fv4pb2g3mpr1n7jfpj9bs86a417iwbf34x4a4"; depends=[nimble]; }; - nimbleSMC = derive2 { name="nimbleSMC"; version="0.11.0"; sha256="14ps01rphi31570m2qhmgpjhdn73aldhm5a20y6fqf3j24k86jys"; depends=[nimble]; }; + nimbleSMC = derive2 { name="nimbleSMC"; version="0.11.1"; sha256="1sh1jaf8hyndazxbfjblfn1mkwqk8gwdqcdmgciqvyw3chsddv9v"; depends=[nimble]; }; nipals = derive2 { name="nipals"; version="0.8"; sha256="0nv7h68hysxnpiinmgw6v3bz4ya53c0p96k9bfvcmalfb7hs8j5z"; depends=[]; }; - nipnTK = derive2 { name="nipnTK"; version="0.1.0"; sha256="0imy2x1h9d842ssw7hmmh21c4mj7s6y05mmjin1270skbnrk2zmr"; depends=[bbw withr]; }; + nipnTK = derive2 { name="nipnTK"; version="0.2.0"; sha256="0y20nik6jrypywqr809891amf9aq6bwf1p0vskr43p0scblbbv0b"; depends=[withr]; }; nivm = derive2 { name="nivm"; version="0.5"; sha256="194kc743hqjalvkvh80y2rj25b8caklcb15pi72d6r02apyvw43d"; depends=[bpcp ssanv]; }; nixmass = derive2 { name="nixmass"; version="1.0.2"; sha256="0g8hm0mnbwahbnk44rfciiggxn5bscfni5gqc6y3za496cf9wlk1"; depends=[lubridate zoo]; }; + nixtlar = derive2 { name="nixtlar"; version="0.5.2"; sha256="0r0vcrwpx7gyndbp6wwvlzvvl1ivk2js13m7lgpkdhriwy4bws9v"; depends=[dplyr ggplot2 httr2 lubridate rlang tidyr tidyselect tsibble]; }; njgeo = derive2 { name="njgeo"; version="0.1.0"; sha256="1cc6gm0l5z31hqif2d8wd503pb48xsmyr28pbildkxgy9z022af5"; depends=[curl dplyr httr jsonlite sf]; }; njtr1 = derive2 { name="njtr1"; version="0.3.2"; sha256="1fyp9myzlx670xjpzxq4ivbl1qs7f3rz6n424ydp1ml994mz709a"; depends=[curl dplyr httr lubridate readr stringi stringr tidyselect]; }; nlMS = derive2 { name="nlMS"; version="1.1"; sha256="01ijg1bp3r0dg8ph7qpsx3hqzrrvfhbykml20hqchxk7c5n2w9wz"; depends=[nlme]; }; @@ -14424,16 +14662,16 @@ in with self; { nleqslv = derive2 { name="nleqslv"; version="3.3.5"; sha256="0fjby0qva2lp2i7x752wva0z15xqys9fgrrcfimqszg65wnig60j"; depends=[]; }; nlgm = derive2 { name="nlgm"; version="1.0"; sha256="03byqqj8ayq7hbaab4cfrk0nbxmiiq2c2i98szfydzkimhrw922a"; depends=[ggplot2 Rfast Rfast2]; }; nlist = derive2 { name="nlist"; version="0.3.3"; sha256="1wq7bp834c7cl37wbrgd9ars3mm0s5c3l3fxlrry728a27c27f9h"; depends=[abind chk coda extras generics lifecycle purrr term tibble universals]; }; - nlive = derive2 { name="nlive"; version="0.2.0"; sha256="15h55ck0xha905wjg89rf8gcz49c3kpd5sqb2xxxkg9z4mlbn1q8"; depends=[dplyr ggplot2 knitr lcmm nlraa Rmisc saemix sitar sqldf]; }; - nlme = derive2 { name="nlme"; version="3.1-164"; sha256="1s6lpp4hpjhyn7ygfngw2f60a40kbbikd0y2wqzbhdvhrqha19br"; depends=[lattice]; }; + nlive = derive2 { name="nlive"; version="0.6.0"; sha256="07an5ds2v7hv15062dcbggdl04b2jqx7mil8a50n6jzdr2x0rb54"; depends=[dplyr fastDummies ggplot2 knitr lcmm nlraa Rmisc saemix sitar sqldf]; }; + nlme = derive2 { name="nlme"; version="3.1-165"; sha256="16clxh0b8sr2k3vddfip3awimn17ffkd5kwgygi8n4y2jfjbndzw"; depends=[lattice]; }; nlmeU = derive2 { name="nlmeU"; version="0.70-9"; sha256="10vk098mv8h9hv6cn8sih2fmg9cjsqmvndqzqm8bbaahla1v6n7q"; depends=[nlme]; }; nlmeVPC = derive2 { name="nlmeVPC"; version="2.6"; sha256="0ymiif377c6rjplzvs3s4bgc62ymw2l3cigx8rh779blb0w90qf8"; depends=[ggplot2 Hmisc optimx quantreg Rcpp RcppArmadillo timeDate]; }; - nlmixr2 = derive2 { name="nlmixr2"; version="2.1.1"; sha256="1br3q49ikx50brca5n6y7kmzxzjjl767hy3gg6as6y9khsaclazc"; depends=[cli crayon lotri magrittr nlmixr2data nlmixr2est nlmixr2extra nlmixr2plot rxode2]; }; + nlmixr2 = derive2 { name="nlmixr2"; version="2.1.2"; sha256="1mfc9gyz21796j7h9g18hrkisrd6vyw4nc5dpfdd9r0abp8x61aw"; depends=[cli crayon lotri magrittr nlmixr2data nlmixr2est nlmixr2extra nlmixr2plot rxode2]; }; nlmixr2data = derive2 { name="nlmixr2data"; version="2.0.9"; sha256="0m1ymsx509zs6w9h92q9h8xyrbv4y7vhdcvfnvw1j4z0055592wg"; depends=[]; }; - nlmixr2est = derive2 { name="nlmixr2est"; version="2.2.1"; sha256="0k279z2lm0dw5pkjj9s8dwg4wisbc29s5xff8hwafdiq0jnxngr4"; depends=[backports BH checkmate cli knitr lbfgsb3c lotri magrittr Matrix minqa n1qn1 nlme nlmixr2data Rcpp RcppArmadillo rex rxode2 rxode2parse rxode2random symengine]; }; - nlmixr2extra = derive2 { name="nlmixr2extra"; version="2.0.9"; sha256="154i98p0zavl5jl7rrincxrchrzd52454ma2jd2cjxhns7nwz3c5"; depends=[checkmate cli crayon data_table digest ggplot2 ggtext knitr lotri nlme nlmixr2est Rcpp RcppArmadillo rxode2 symengine]; }; + nlmixr2est = derive2 { name="nlmixr2est"; version="2.2.2"; sha256="1g25cqh3yybq9lxbxma3fd11jw1wgpnadxjx78sqqbzwx54xiawf"; depends=[backports BH checkmate cli knitr lbfgsb3c lotri magrittr Matrix minqa n1qn1 nlme nlmixr2data Rcpp RcppArmadillo rex rxode2 rxode2parse rxode2random symengine]; }; + nlmixr2extra = derive2 { name="nlmixr2extra"; version="2.0.10"; sha256="03k8f6v6qqgbl8ngga0n6xyx2kz98xfv6kvi7rad9n90fpdqiaxl"; depends=[checkmate cli crayon data_table digest ggplot2 ggtext knitr lotri nlme nlmixr2est Rcpp RcppArmadillo rxode2 symengine]; }; nlmixr2lib = derive2 { name="nlmixr2lib"; version="0.2.0"; sha256="1clar5nw77dc07q1l014ajc5avfdd2n82chdpbv1gcs2mfyrwr9r"; depends=[checkmate cli nlmixr2est rxode2]; }; - nlmixr2plot = derive2 { name="nlmixr2plot"; version="2.0.8"; sha256="0w6y80ih5fj9s0in46wgdwfy479pnv4r8k5l722kzkn70wr14gx6"; depends=[ggplot2 nlmixr2est nlmixr2extra rxode2 vpc xgxr]; }; + nlmixr2plot = derive2 { name="nlmixr2plot"; version="2.0.9"; sha256="0n0crjmb5mwnrq52hf9hwi36ggvwrpyxsr9gm608dwwxky8zmrwg"; depends=[ggplot2 nlmixr2est nlmixr2extra rxode2 vpc xgxr]; }; nlmixr2rpt = derive2 { name="nlmixr2rpt"; version="0.2.0"; sha256="1lc7pmh97wggfms2in37f5bdrri914ninr58ah92215p3fxcqmls"; depends=[cli dplyr flextable ggforce ggplot2 ggpubr nlmixr2 nlmixr2extra onbrand rxode2 stringr xpose xpose_nlmixr2 yaml]; }; nlmm = derive2 { name="nlmm"; version="1.1.0"; sha256="0mi9nsdzsvaxfb3n3z3rijd8saw4l7x3g2gq8ivzxyilyav5anxb"; depends=[BH gsl lqmm MASS Matrix mvtnorm nlme numDeriv Qtools Rcpp RcppArmadillo statmod]; }; nlmrt = derive2 { name="nlmrt"; version="2016.3.2"; sha256="1g0qq0a933ay65gkp04qgn2wqk6vw79pj2a228c2ski4rcmkjxyn"; depends=[]; }; @@ -14461,7 +14699,7 @@ in with self; { nlts = derive2 { name="nlts"; version="1.0-2"; sha256="0s49qjwavl9ns2746nn4zy4h4dh0njfcvznm3qd61qhs7np9w1db"; depends=[acepack locfit]; }; nmaINLA = derive2 { name="nmaINLA"; version="1.1.0"; sha256="1qjb5n1qr89rv2a5ay2p74cs3i6swkn8wllklgn57fnahb9pcrgi"; depends=[]; }; nmadb = derive2 { name="nmadb"; version="1.2.0"; sha256="17r5vc57ilhy6cfcqpfyp9nzzjaa5gc8qkgfn3y8sppqh1g1mi40"; depends=[devtools jsonlite RCurl readxl]; }; - nmaplateplot = derive2 { name="nmaplateplot"; version="1.0.1"; sha256="1k6i4d1n2cadhp1nzb7ij1d58wrgyhrqpwq1flixgkyrzz375z9g"; depends=[ggplot2]; }; + nmaplateplot = derive2 { name="nmaplateplot"; version="1.0.2"; sha256="0vc9v5xvcl8k312dng7z5xaz7k9a93hsayjncpij59fcrr01n16b"; depends=[ggplot2]; }; nmarank = derive2 { name="nmarank"; version="0.3-0"; sha256="1i2vagjq96q2vhr2lxbm3hqspddfq9qkqjcr8smni6ikmw32akil"; depends=[data_tree dplyr MASS meta mvtnorm netmeta rlang tibble tidyr]; }; nmathresh = derive2 { name="nmathresh"; version="0.1.6"; sha256="1jrf7k7an5y867k40aj28ib7vrjyqky2cslwzmfx28snp8ns1vd3"; depends=[ggplot2 gridExtra gtable Matrix nnls]; }; nmfbin = derive2 { name="nmfbin"; version="0.2.1"; sha256="1g2yhb2g11fd0dl4xiq2xhjizyzg7f8x3rm01gjbdp1c68vlsf8q"; depends=[]; }; @@ -14472,15 +14710,15 @@ in with self; { nn2poly = derive2 { name="nn2poly"; version="0.1.1"; sha256="03p3asvx1913lkmi6f1bq71wxm83qc0lbniv4s9s9fcv13md3xml"; depends=[generics matrixStats pracma Rcpp RcppArmadillo]; }; nnGarrote = derive2 { name="nnGarrote"; version="1.0.4"; sha256="0km7vx9qkfijj2af5ma4q88mhgkrw361hpv3n8dyzpr8654hrw4v"; depends=[glmnet]; }; nnR = derive2 { name="nnR"; version="0.1.0"; sha256="1wxryfkmachsv5m3bbb7ym70p55l36b218q8r2wjy4bl0cwi83jp"; depends=[]; }; - nnTensor = derive2 { name="nnTensor"; version="1.2.0"; sha256="1anyqk1pafvw20rgsbxcl604qdhnbcymfin3yz9nv2v4mv4sf1ci"; depends=[fields ggplot2 MASS plot3D rTensor tagcloud]; }; + nnTensor = derive2 { name="nnTensor"; version="1.3.0"; sha256="1kkv3788qh3ls49d2ixvpyky96qz0qij8mbxaczqgrdmxpyfnc8k"; depends=[fields ggplot2 MASS plot3D rTensor tagcloud]; }; nna = derive2 { name="nna"; version="0.0.2.1"; sha256="17cz1jf7iv61wspqldfdwbdjhlr0wq09idkzlivfb8aik5w9f0z5"; depends=[]; }; nncc = derive2 { name="nncc"; version="2.0.0"; sha256="0sm54rskw84g3gl04i0cs1vhg3na54lbcwn1gh0yibfk7ihwf91q"; depends=[cluster dplyr furrr ggplot2 igraph rlang tidyr]; }; nndiagram = derive2 { name="nndiagram"; version="1.0.0"; sha256="0x6gv8rmvnqvvwxgqmkybmvmf4g94im0lardkmb5a043krvgh3i4"; depends=[dplyr]; }; nnet = derive2 { name="nnet"; version="7.3-19"; sha256="1rrc70shnrnn7gyq5fhnmw841a06d8y0vp5pp8xv1lvhj931y959"; depends=[]; }; nnfor = derive2 { name="nnfor"; version="0.9.9"; sha256="0jrp840vr5jyk76808l0d1r46hhvz0l0vimwdc82wilfh8sb5sz5"; depends=[forecast generics glmnet MASS neuralnet plotrix tsutils uroot]; }; - nngeo = derive2 { name="nngeo"; version="0.4.7"; sha256="0scfclw2prjfgm1liwbbys9ds00pyb0fk8q0mw6d6nqnbrw9kfnd"; depends=[data_table nabor sf units]; }; + nngeo = derive2 { name="nngeo"; version="0.4.8"; sha256="18rww271wm9k8v1jibs6ans549yrz0zzl2c63sgdd1f9kkhr2apm"; depends=[data_table nabor sf units]; }; nnlasso = derive2 { name="nnlasso"; version="0.3"; sha256="1n7karlmgq61z9ywfx9xb5wvmxx40ydpnzzazj1xr70qlv5m0qk4"; depends=[]; }; - nnlib2Rcpp = derive2 { name="nnlib2Rcpp"; version="0.2.5"; sha256="1xmwx6vg4zrn81d34jsvzf61yh0g8nmssg87van25ysgxm6gzqs2"; depends=[Rcpp]; }; + nnlib2Rcpp = derive2 { name="nnlib2Rcpp"; version="0.2.8"; sha256="06fb4wh39gdlywpyj86hnys87mrwrx2m6dw16zkrs1kawg4z5gvm"; depends=[class Rcpp]; }; nnls = derive2 { name="nnls"; version="1.5"; sha256="0lilga63p7k5mkkfcf5p3swx76vwysl979jxszm6svzqhsrgww6d"; depends=[]; }; nnspat = derive2 { name="nnspat"; version="0.1.2"; sha256="1svqdb20x5d4wsbi97lhjwkhl623ksawf4w4w1f0hwsx0f3xjzvi"; depends=[MASS pcds Rdpack]; }; nnt = derive2 { name="nnt"; version="0.1.4"; sha256="1rrqq8m3plsq13hsh53h948wbx37gl87hplj4ms2pxxf1zwqsmnj"; depends=[survival survRM2]; }; @@ -14503,29 +14741,30 @@ in with self; { nolock = derive2 { name="nolock"; version="1.1.0"; sha256="1d909qq6091rbsmnls2lc8l64iy7cam281s4854v4iar8l4dxh77"; depends=[crayon NCmisc rstudioapi stringr]; }; nombre = derive2 { name="nombre"; version="0.4.1"; sha256="16hpr628j8rzxg5k71qsgc9xhz1w4gpi3fry5vp1mbwvalmlish2"; depends=[fracture]; }; nomclust = derive2 { name="nomclust"; version="2.8.0"; sha256="1bl92zaf4iidm48xjxj0v812lx7gk3i3frvb59xr71y91ranwjpv"; depends=[cluster clValid Rcpp]; }; - nominatimlite = derive2 { name="nominatimlite"; version="0.3.0"; sha256="1pxajzf5pbqr7klzsd3kry7fxvs3va2si45irz07v3v7nr2a1id8"; depends=[dplyr jsonlite lifecycle sf]; }; + nominatimlite = derive2 { name="nominatimlite"; version="0.4.0"; sha256="1qvbg4dpy65xjmh7i96xhm7cw07w375hm119540gqmc9z1zdh4g3"; depends=[dplyr jsonlite sf]; }; nomisr = derive2 { name="nomisr"; version="0.4.7"; sha256="0mf301nhsl71h79jxfkwa27j5nifsxp7y6vxbnx87rybr80b3hg1"; depends=[dplyr httr jsonlite rlang rsdmx snakecase tibble]; }; nomnoml = derive2 { name="nomnoml"; version="0.3.0"; sha256="0akxxc2yjpn0h7xvfpflmazihxnk9hpkn0l3353gbll388qxd620"; depends=[htmlwidgets lifecycle png rlang webshot2]; }; nomogramEx = derive2 { name="nomogramEx"; version="3.0"; sha256="16235rwblnzn8k53817llwy2pzhnpifh6ij159nxymjm8ar9qpbp"; depends=[pracma rms]; }; nomogramFormula = derive2 { name="nomogramFormula"; version="1.2.0.0"; sha256="1j6g5kndl0n2g8acwq8pn09sk0bjcsphbcd77ha1j5dnwdmy73c0"; depends=[do Hmisc rms]; }; - nomordR = derive2 { name="nomordR"; version="0.1"; sha256="02d5gk5pd4vpd61ys9x81maxjrmbshx1wdv6xxsvafrnz7a7pmks"; depends=[]; }; nonLinearDotPlot = derive2 { name="nonLinearDotPlot"; version="0.5.0"; sha256="073qgada7bqz8jnpac4f3qb9iwsaiyb5m5y0fjgvyrjnjij29zxk"; depends=[]; }; noncompliance = derive2 { name="noncompliance"; version="0.2.2"; sha256="1lcybgj95z7lz7p26xbsdiv0vvms4ab4f8kad0pclacf1l43v0j6"; depends=[data_table Rcpp]; }; noncomplyR = derive2 { name="noncomplyR"; version="1.0"; sha256="1a9m6r9cizw42nmy24jdsrsbllg5z84fs8b239axnh1fxzskg2qy"; depends=[MCMCpack]; }; nonet = derive2 { name="nonet"; version="0.4.0"; sha256="1043vplj8libbzll172h82dfwnz2lsdba5na2g9liryg8p08h4v8"; depends=[caret dplyr e1071 ggplot2 glmnet pROC purrr randomForest rlang rlist tidyverse]; }; nonlinearICP = derive2 { name="nonlinearICP"; version="0.1.2.1"; sha256="1m9a1f0yrbjl0nx2l7r76pyi78b2bxj8v4jx92yga91f975mw6np"; depends=[caTools CondIndTests data_tree randomForest]; }; - nonlinearTseries = derive2 { name="nonlinearTseries"; version="0.2.12"; sha256="0fdyr7a5pac40wrrn6frj0q8pn03dic5a2rls3zr85yj48mimyfs"; depends=[lifecycle Matrix Rcpp RcppArmadillo tseries zoo]; }; + nonlinearTseries = derive2 { name="nonlinearTseries"; version="0.3.0"; sha256="1qzg5azydivxp04bs1s3m21bigacyrv6cak3cx7xpgq2w4fnb3br"; depends=[lifecycle Matrix Rcpp RcppArmadillo tseries zoo]; }; nonmem2R = derive2 { name="nonmem2R"; version="0.2.5"; sha256="0py0nn8sn9p4lcdbjsfmz3z0ch3i3qbvfjifmjzdhdjgd9vvi19r"; depends=[ggplot2 gridExtra lattice latticeExtra MASS mvtnorm reshape2 splines2]; }; - nonmem2rx = derive2 { name="nonmem2rx"; version="0.1.3"; sha256="008lxg0n09alrv07i96crs430q6zvg5siasyqrfmaahq7cclsynn"; depends=[checkmate cli crayon data_table digest dparser ggforce ggplot2 lotri magrittr qs Rcpp rxode2 rxode2parse xml2]; }; + nonmem2rx = derive2 { name="nonmem2rx"; version="0.1.4"; sha256="08yyh7jwlqfxprwrs2f3pgjzlii66p98ixnd5r2jliqdzxbx1ciy"; depends=[checkmate cli crayon data_table digest dparser ggforce ggplot2 lotri magrittr qs Rcpp rxode2 rxode2parse xml2]; }; nonmemica = derive2 { name="nonmemica"; version="1.0.8"; sha256="000pjp7zk3pw7xhg0w8363b1q52l6ikqjpvdxjd1kb61y99bi6m2"; depends=[csv dplyr encode lazyeval magrittr metaplot rlang spec tidyr xml2]; }; nonneg_cg = derive2 { name="nonneg.cg"; version="0.1.6-1"; sha256="1ppwv5yad8v7qhjr4z5p5vl51ry3sxqbmg0ynkx11j67byggn6xf"; depends=[Rcpp]; }; - nonnest2 = derive2 { name="nonnest2"; version="0.5-6"; sha256="1s31a03c148azvc20ihmz8vhzgs7a3r0nxzf806zsr5j1zsl94dm"; depends=[CompQuadForm lavaan mvtnorm sandwich]; }; + nonnest2 = derive2 { name="nonnest2"; version="0.5-7"; sha256="0gnv538wskgyp6v08b0grz76mfpc1qlbp0r5w19b9lrv9d3c4h74"; depends=[CompQuadForm lavaan mvtnorm sandwich]; }; nonpar = derive2 { name="nonpar"; version="1.0.2"; sha256="0gflldd3kjbpdlvbwi073igj6shcqr9g5x6zcp5gfa12404qpflq"; depends=[]; }; nonparaeff = derive2 { name="nonparaeff"; version="0.5-13"; sha256="04ya0b4nwfcyw7asby8j5npa59p8w8ri3cifpigvqmdg47v9kzmc"; depends=[geometry Hmisc lpSolve]; }; nonparametric_bayes = derive2 { name="nonparametric.bayes"; version="0.0.1"; sha256="1acrjh0fcr15b9k2hpg0ihfav0w2lzjdpjyayz3f4hx596j32vi8"; depends=[mvtnorm progress]; }; + nonprobsvy = derive2 { name="nonprobsvy"; version="0.1.0"; sha256="0p5x88dgas0hy3xydn5803pybf5ryxc85gzn9fb2c5kdrv2v0pcr"; depends=[doParallel foreach MASS mathjaxr Matrix maxLik ncvreg nleqslv RANN Rcpp RcppArmadillo survey]; }; nopaco = derive2 { name="nopaco"; version="1.0.7"; sha256="0ffcbrk3l2xprd4jiilvk6i5l39x4mi7vrx4irzqnf3m9nwsz6w5"; depends=[Matrix]; }; nopp = derive2 { name="nopp"; version="1.1.2"; sha256="1kcgwhwj02bivqqd86l9gk3gqiws9c4kjcsjmd0arcfd1bcygbj2"; depends=[MASS mlogit]; }; - nor1mix = derive2 { name="nor1mix"; version="1.3-2"; sha256="0252kqhdsp374isc59pm1c6dmsb16jibpnsp1bpyh4k5mg73cdj6"; depends=[]; }; + nor1mix = derive2 { name="nor1mix"; version="1.3-3"; sha256="0vh7vlvijska09rm0cb2lakwhjm38mc4daksc2zniyj7r3wd1gwp"; depends=[]; }; + norMmix = derive2 { name="norMmix"; version="0.1-1"; sha256="1nkgidzbqp83bqvkpalxs58s2blpx9s1j9dm2i13plfx3kv0d6x3"; depends=[cluster MASS mclust mvtnorm sfsmisc]; }; nord = derive2 { name="nord"; version="1.0.0"; sha256="1gisqca85vzbqq5hs5bgqjgrjyksxj176x97kv9vv6mwll8kijl9"; depends=[ggplot2]; }; nordklimdata1 = derive2 { name="nordklimdata1"; version="1.2"; sha256="0c2hbh3qy8nrs275lxpzfgqsfgwp81m4kv0layvnjj09fcybm54x"; depends=[]; }; norm = derive2 { name="norm"; version="1.0-11.1"; sha256="1g33g721c0f2b275b334ir6n0h81fh567vs9vrxk60y21z1ydzy2"; depends=[]; }; @@ -14539,15 +14778,15 @@ in with self; { nortestARMA = derive2 { name="nortestARMA"; version="1.0.2"; sha256="11ala9z0snsbn1xmj9yzs4kyh9js1w19x0dnnmh5cbr9bi7aag50"; depends=[astsa]; }; nortsTest = derive2 { name="nortsTest"; version="1.1.2"; sha256="0z3ganmaz3p0s957g123gcmcf6x01gvsmrl6ddi3n588hysscqsy"; depends=[cowplot forecast ggplot2 gridExtra MASS nortest tseries uroot zoo]; }; nos = derive2 { name="nos"; version="2.0.0"; sha256="1a2wgakyrp5gn0gxms83nmajxfr9b5r8pz5s4pccc0m325glzbqr"; depends=[bipartite dplyr gmp]; }; - nose = derive2 { name="nose"; version="1.0"; sha256="17l78vmfqc22inq6zaqpnk2m91wp0nfjbbwfcpfqykf8lk9ipqna"; depends=[]; }; nosoi = derive2 { name="nosoi"; version="1.1.2"; sha256="15s2asw2jn890dyjnx4rnv499wv6ks9k7vfpbcm2sznw95rmwc67"; depends=[data_table raster]; }; not = derive2 { name="not"; version="1.5"; sha256="0g40500h2cwimzf7w3zqas924i4cvxddmqv0ysqrm4r7y2dpv48i"; depends=[]; }; - notebookutils = derive2 { name="notebookutils"; version="1.5.1"; sha256="0f1vwc4y91k3yxsbbr7c47z3gwr3zk9dlyp3xx2ggrk4nnqhlafb"; depends=[]; }; + notebookutils = derive2 { name="notebookutils"; version="1.5.3"; sha256="09jqh44jfbbqq34xkr6bznwc7swwjawfjpacikxpg3009i847pbl"; depends=[]; }; notifyme = derive2 { name="notifyme"; version="0.3.0"; sha256="0b6xrv6c4id7rs0dafg96pl4brn4yma5xh9wjz78ql44bg3w5s91"; depends=[dplyr httr magrittr]; }; novelforestSG = derive2 { name="novelforestSG"; version="2.1.0"; sha256="17xjcpb1chvclqwjc3948lf4n730s91hczdb73b5b620w276mdz2"; depends=[]; }; novelqualcodes = derive2 { name="novelqualcodes"; version="0.13.1"; sha256="0126nkn68hgw258zqpp0abcq1a3s0v2x0b3nc9brrzvfl2ynpnpm"; depends=[ggpattern ggplot2 naturalsort readxl]; }; noweb = derive2 { name="noweb"; version="1.1-4"; sha256="16425n0cqfkjqs8wv1vkxbdm5xlryvsa2sxwa3nqjsfj6d7pc6mv"; depends=[]; }; np = derive2 { name="np"; version="0.60-17"; sha256="0dkz8aing2zdah83sjs874cxgwyzx82x60idziqfbhjf4g5mfyfr"; depends=[boot cubature quadprog quantreg]; }; + npDoseResponse = derive2 { name="npDoseResponse"; version="0.1"; sha256="0gfr210xxq1lq4c60a1fzwjcqcs9m9jixlqlzy0mblbcab3br6h1"; depends=[]; }; npExact = derive2 { name="npExact"; version="0.2"; sha256="055wm5lcj98wb71lqp2zdyl8kkwvi6lwmnaylynvr907xqabaqvd"; depends=[]; }; npIntFactRep = derive2 { name="npIntFactRep"; version="1.5"; sha256="14ms66ppzb4jjsa3fparic6gdn913f6wv2ccjyb02j1ahs4iaa4g"; depends=[ez plyr]; }; npROCRegression = derive2 { name="npROCRegression"; version="1.0-7"; sha256="0fl10gj6s09gfmb7wl1y62fr49qnckjqxbzhjkyx029v9klbfvp7"; depends=[lattice]; }; @@ -14567,7 +14806,7 @@ in with self; { npcurePK = derive2 { name="npcurePK"; version="1.0-2"; sha256="1p1vl9w8z8xq6bfsn1kgq5cnzyf4aiax8iis0vb4xcxrb2wl0mav"; depends=[data_table DescTools doParallel foreach npcure]; }; npde = derive2 { name="npde"; version="3.5"; sha256="04bksbziqapj1nx0xnjrhgapfd6mxfh5kbyvf86k02jszmxlzr4d"; depends=[ggplot2 gridExtra mclust rlang scales]; }; nph = derive2 { name="nph"; version="2.1"; sha256="100x7ar498s18rs8m4bx0kf4h8vqk1clb4z4kdnlni16lrpc90hy"; depends=[ggplot2 muhaz multcomp mvtnorm survival]; }; - nphPower = derive2 { name="nphPower"; version="1.0.0"; sha256="0jqrbjm56nmhrmhsidz0bzyifq6kpqch8r64j8vd98b7xgcb6w4h"; depends=[MASS mvtnorm survival zoo]; }; + nphPower = derive2 { name="nphPower"; version="1.1.0"; sha256="0mvynqmpsgfwmvxi478mkw15rscxdb6mvrj1djfhhm54h0w0133k"; depends=[MASS mvtnorm survival zoo]; }; nphRCT = derive2 { name="nphRCT"; version="0.1.0"; sha256="0b29izx3rz17g0jx72s33jj8ps0z3kq8fj2v0035hcjacnswz9ya"; depends=[ggplot2 purrr survival]; }; npi = derive2 { name="npi"; version="0.2.0"; sha256="0akf9m46iy18nqm678sga1dxq1135jj33yrxz30yhd75w6nicgri"; depends=[checkLuhn checkmate curl dplyr glue httr magrittr purrr rlang stringr tibble tidyr]; }; nplplot = derive2 { name="nplplot"; version="4.7"; sha256="18959kvp68h3lp1zwv726rfsj509mcdmjx0qh41qrff76cdhvrb7"; depends=[]; }; @@ -14580,28 +14819,28 @@ in with self; { npordtests = derive2 { name="npordtests"; version="1.2"; sha256="1axzcyy45h3rs67m0i3cvwbmza1mnmraxan9j4zlpxdd5x9nz4h8"; depends=[]; }; nppbib = derive2 { name="nppbib"; version="1.2-0"; sha256="1nn6wf89jhr3gy4rcd6px0cd5b1bsr7pbaxng4adba8n3yrss7vs"; depends=[]; }; npphen = derive2 { name="npphen"; version="2.0.0"; sha256="17q9zhh7abpsddb25km1y6kyijlf6lh8j43lqv58jsjig98rrk6w"; depends=[ks lubridate terra]; }; - npreg = derive2 { name="npreg"; version="1.0-9"; sha256="10pgcjhiannvxkbsw3ywkjzmgsq2m7dqwqhxkfcdnbc052n7s6di"; depends=[]; }; + npreg = derive2 { name="npreg"; version="1.1.0"; sha256="09z51svfigw7xzs8s20m19amy2ypi9gdihqsjvqngh6pwsci5v9n"; depends=[]; }; npregderiv = derive2 { name="npregderiv"; version="1.0"; sha256="1k873cs3rs15l13z8017n4anacandx7di6yk1zlamcc5p3vlh59n"; depends=[]; }; npregfast = derive2 { name="npregfast"; version="1.5.2"; sha256="1d2p23qqwa06rxfl5v9bcvq2j6pcsvjywq74qgrflkjk45g2kjb5"; depends=[doParallel foreach ggplot2 mgcv sfsmisc shiny shinyjs wesanderson]; }; nprobust = derive2 { name="nprobust"; version="0.4.0"; sha256="1vry64r3xms6xls6bqq918prjyhs5svhl2yjvq0jxycaaqw2sgyp"; depends=[ggplot2 Rcpp RcppArmadillo]; }; nproc = derive2 { name="nproc"; version="2.1.5"; sha256="1p5wjz0rafg27fsl48l9pmki3px1k0pav3ignz4swik5i1nhnc8w"; depends=[ada e1071 glmnet MASS naivebayes randomForest ROCR tree]; }; nprotreg = derive2 { name="nprotreg"; version="1.1.1"; sha256="152z2wsm4gwqw51imk80vxg9spvl9293vqsja8d8gh1rmsm6m5r2"; depends=[foreach]; }; npsf = derive2 { name="npsf"; version="0.8.0"; sha256="011y8k3sdhhgzf4yn0wdxx55yv4kdpgyhj0bbm6krjdpphnr9557"; depends=[Formula Rcpp]; }; - npsm = derive2 { name="npsm"; version="1.1.1"; sha256="0ri0nn7ahagwcgyq75z20a2xprfagwxynjim8q9ls5y7vav17486"; depends=[class plyr Rfit]; }; + npsm = derive2 { name="npsm"; version="2.0.0"; sha256="0d2pa55jcxrphmsnv0wcv3xsdidjcr8b8s9krbal27rjrvqqh27s"; depends=[class plyr Rfit]; }; npsp = derive2 { name="npsp"; version="0.7-13"; sha256="1js40ir7gb0r24aiv9biyvf1mddhmaxkdlraflcay7w6b9yir2jm"; depends=[quadprog sp spam]; }; - npsr = derive2 { name="npsr"; version="0.1.1"; sha256="1fzvilzjg9z05991sr1s1bdp17kfl6d1580qdllk8is9ac06np0v"; depends=[gmp infotheo MASS]; }; npsurv = derive2 { name="npsurv"; version="0.5-0"; sha256="1ihxhb42cga1hssj2jv4ah0f4hlwsky899ij5261fzh1wxvdp1xw"; depends=[lsei]; }; - npsurvSS = derive2 { name="npsurvSS"; version="1.0.1"; sha256="0k9xvxii5527vynf7yy50j7z4jhxgk5ydhdcaaygm9ynx5yq14ip"; depends=[]; }; + npsurvSS = derive2 { name="npsurvSS"; version="1.1.0"; sha256="070sggfz5p3zmf1dxrjnrhh2xj27azcc7sgv33libzbc3hsi3dg7"; depends=[]; }; nptest = derive2 { name="nptest"; version="1.1"; sha256="1yfxpw3xlscv0maqgvadxj93qgs25w027lk2br1zlckll8dvdakz"; depends=[]; }; npwbs = derive2 { name="npwbs"; version="0.2.0"; sha256="029vxc6iy1p6nv0vw6097rvpkwlf0a24643gr6dbycpbail9qlqg"; depends=[]; }; nrba = derive2 { name="nrba"; version="0.3.1"; sha256="1d3mgz9riy14a7n7swzizjl8y5qmbk9p9c01ml968nk60ivb6ppv"; depends=[broom dplyr magrittr rlang srvyr survey svrep tidyr]; }; nricens = derive2 { name="nricens"; version="1.6"; sha256="0fpgp6k3mhb0qxbx6248k9bscnmlzwj70mqh631a1nc4cpdjvw3q"; depends=[survival]; }; - nsRFA = derive2 { name="nsRFA"; version="0.7-16"; sha256="1l6072fqpqlzpp5350mg98vsv0w58mcn8masvyivfqqw9v5h4bzn"; depends=[]; }; + nsRFA = derive2 { name="nsRFA"; version="0.7-17"; sha256="083ljzfpcxq769xwb0vfk20kj38gbq22vxf5j597b4qlvdwh5qbq"; depends=[]; }; nsROC = derive2 { name="nsROC"; version="1.1"; sha256="1fi7k61fja98kpn528jprjdycwz01rnqm368m82anxh21k7q4s1m"; depends=[sde survival]; }; nsarfima = derive2 { name="nsarfima"; version="0.2.0.0"; sha256="0sv63anrsh0ajfvvkb44zsvc7sxws3xpsgwxqa951gy98w8h58g5"; depends=[]; }; nscancor = derive2 { name="nscancor"; version="0.7.0-6"; sha256="1fcw3qpsc7kpg2ha1qkp2277ir2kyhy71vjwypfp49y7nqiwm7kh"; depends=[]; }; nse = derive2 { name="nse"; version="1.21"; sha256="0mw2ijc6z0l8sa7z5fbcapp1rl87zhh5v32iw1mcjw4khwc93bk7"; depends=[coda mcmc mcmcse np Rcpp sandwich]; }; - nser = derive2 { name="nser"; version="1.5.1"; sha256="1bsdq4hym492hw6sq7swbxqbk7x7q085crqd7f8ch4s9zxfijj5l"; depends=[curl dplyr googleVis lubridate magrittr purrr readr reticulate rvest stringr xml2]; }; + nseq = derive2 { name="nseq"; version="0.1.1"; sha256="189s543dchbjki4vj4yszmlnarpghdn4s53k2mlwfzps1m7m39df"; depends=[checkmate]; }; + nser = derive2 { name="nser"; version="1.5.2"; sha256="0p7yz561m85962l0cfld7aa932rkiypjg8lc46zf43wzk2idlgxi"; depends=[curl dplyr googleVis lubridate magrittr purrr readr reticulate rvest stringr xml2]; }; nseval = derive2 { name="nseval"; version="0.5.1"; sha256="10b9kvvnlgc0jpbjnpkjmrkbl8plbkbggckwzy41kv41ha7rgda2"; depends=[]; }; nsga2R = derive2 { name="nsga2R"; version="1.1"; sha256="1b3kkd1mi6g13bl2mkzqyvz0ki296fa9pv055r8mpkdm6gk12lb4"; depends=[mco]; }; nsga3 = derive2 { name="nsga3"; version="0.0.3"; sha256="1jv3kw22jw24n7lnwhq3857mygr2yfv8c5xp3lbqqgz5840cdfa1"; depends=[mlr parallelMap rPref xgboost]; }; @@ -14611,8 +14850,9 @@ in with self; { nsprcomp = derive2 { name="nsprcomp"; version="0.5.1-2"; sha256="1zlc1ximx96f235c0l8qfs6vbp1kpnbf943wxsfahnnlnxvwi59f"; depends=[]; }; nswgeo = derive2 { name="nswgeo"; version="0.4.0"; sha256="18s7mkcf32h7si5b9n1djqz9jl24n6f6pg38ifafb1a5jnkwqs2f"; depends=[cartographer sf]; }; nsyllable = derive2 { name="nsyllable"; version="1.0.1"; sha256="1rxzfivg5pkx8485l4bxxrdnvik31g5jps5l386x0w7mfs6498jg"; depends=[]; }; - ntdr = derive2 { name="ntdr"; version="0.3.3"; sha256="1v8lwsp9c81pg0i140fc9zfng6cf4a0p0jyc2k8gdg7hsl9dwks1"; depends=[curl dplyr httr lubridate purrr readxl rvest tidyr]; }; - ntsDists = derive2 { name="ntsDists"; version="2.0.0"; sha256="1a0yqnrryx6irvcab4iwgnv6wmsndij4ycgbq2kbv86zkw2rgw59"; depends=[]; }; + ntdr = derive2 { name="ntdr"; version="0.3.4"; sha256="1s4zqfi9nyr1sksiq0bpdjgnv32qp1yk3igqs5jsrzdrgzbda1z9"; depends=[curl dplyr httr lubridate purrr readxl rvest tidyr]; }; + ntranova = derive2 { name="ntranova"; version="0.0.1"; sha256="0is9avgam63irzrah6s8yfkh9amwq9rsfhlpfx9s375ih8d3pzww"; depends=[]; }; + ntsDists = derive2 { name="ntsDists"; version="2.1.1"; sha256="02q78hzqv5306fgy590y951ybvixaibmslhvgb34rfp8fnpj1zm3"; depends=[]; }; nucim = derive2 { name="nucim"; version="1.0.11"; sha256="12qfs4xd8lnkjhb0gkvxym07rndrwh5idvppj16v78amrk96rj5z"; depends=[bioimagetools EBImage fields stringr]; }; nuggets = derive2 { name="nuggets"; version="1.0.2"; sha256="1ijlzcp42bhb2qpnnv9gi3nm87pprgs54m8s6vl7lgqv2njdasdg"; depends=[cli Rcpp rlang testthat tibble tidyr tidyselect]; }; nullabor = derive2 { name="nullabor"; version="0.3.9"; sha256="19nfmsnzndg9pdjg7m9w4vm4c3209ny52cpjdhmmhggvf7dxaiyg"; depends=[dplyr forecast fpc ggplot2 magrittr MASS moments purrr rlang tibble tidyr tsibble viridis]; }; @@ -14621,6 +14861,7 @@ in with self; { numKM = derive2 { name="numKM"; version="0.2.0"; sha256="0g5jw12fmfc6nl6a3ghpslkjd2d7pbihl70sks35r7dalmr6ihzk"; depends=[survival]; }; numOSL = derive2 { name="numOSL"; version="2.8"; sha256="08bkwr4mx7lxlwfavxggvfn6cbn3wqhyix0wbh92ayb2y92c7fp4"; depends=[]; }; numbat = derive2 { name="numbat"; version="1.4.0"; sha256="1a9rcna5m7lyh56d8dwwzq32svgad8vwidikna1j2j63i4frjms4"; depends=[ape caTools data_table dendextend dplyr GenomicRanges ggplot2 ggraph ggtree glue hahmmr igraph IRanges logger magrittr Matrix optparse parallelDist patchwork pryr purrr R_utils Rcpp RcppArmadillo RhpcBLASctl roptim scales scistreer stringr tibble tidygraph tidyr vcfR zoo]; }; + numberize = derive2 { name="numberize"; version="1.0.0"; sha256="1p3zcknlrv4ayyxk79vd021r9jwk2dxwp3saryzn4vgj8fnac8iy"; depends=[]; }; numberofalleles = derive2 { name="numberofalleles"; version="1.0.1"; sha256="0rjl21844yqp2503gy71c6vg8xywc4lcx7qr9vwvkjw5wiwxls11"; depends=[partitions pedtools Rcpp ribd]; }; numbers = derive2 { name="numbers"; version="0.8-5"; sha256="02r2mlq3jygvwi7anbrrid6693qc7iklxhc9ksmqjdlmgzdxxmbp"; depends=[]; }; numbersBR = derive2 { name="numbersBR"; version="0.0.2"; sha256="0ihxlny745gpz1ngq862rydn1zwn8zni1xw9mmgw8hkylsrnjfq8"; depends=[stringr]; }; @@ -14636,8 +14877,9 @@ in with self; { nzffdr = derive2 { name="nzffdr"; version="2.1.0"; sha256="14s2dfrrknaswg4l69lncsdbd7algpd9pzgrhpip0vbmyq9pa2ni"; depends=[curl httr rlang stringi tidyr xml2]; }; nzilbb_labbcat = derive2 { name="nzilbb.labbcat"; version="1.3-0"; sha256="1nrd67d78klhnbslrpqaigbv1qrvl2nr6l9qhmgm2j34qpjrv7n5"; depends=[httr jsonlite rstudioapi stringr]; }; nzpullover = derive2 { name="nzpullover"; version="0.3.0"; sha256="0b3mz5i58m48fa1x7gv4l3gqj0gvrar201ph2l1gkbcnfmazwjp8"; depends=[]; }; + o2geosocial = derive2 { name="o2geosocial"; version="1.1.2"; sha256="0myzr25jjjvlszr0j5ay2nha1nrccwhgh0qd01p52xrlggfjhz1g"; depends=[data_table geosphere ggplot2 outbreaker2 Rcpp visNetwork]; }; o2plsda = derive2 { name="o2plsda"; version="0.0.18"; sha256="17dmb82q4g7lspvrvrz9324qinkr07vlhxsr2vd5ikj7cqxivgmv"; depends=[dplyr ggplot2 ggrepel magrittr Rcpp RcppArmadillo]; }; - oHMMed = derive2 { name="oHMMed"; version="1.0.1"; sha256="17g74kss72l2isxl5klpdx7prq5fgpbf90cq9as8v6a9pkl75wif"; depends=[cvms ggmcmc ggplot2 gridExtra mistr scales vcd]; }; + oHMMed = derive2 { name="oHMMed"; version="1.0.2"; sha256="09ii42791qyfzc641906k92p5nd8r162jji3fxjdidw2ncwnnn8b"; depends=[cvms ggmcmc ggplot2 gridExtra mistr scales vcd]; }; oRus = derive2 { name="oRus"; version="1.0.0"; sha256="0q6hgiidcpm95pyisndihxjg78v6k1zycdqd72309aankdk0g5h4"; depends=[dplyr knitr rmarkdown stringr tibble tidytext tm topicmodels xlsx]; }; oaColors = derive2 { name="oaColors"; version="0.0.4"; sha256="040sdqrk9dciylnnrrshlj06s9qhvngii9shx1p8412ip7mk8r1m"; depends=[MASS RColorBrewer]; }; oaPlots = derive2 { name="oaPlots"; version="0.0.25"; sha256="0c5ig1ar02vg38pjjmp3gd53ij1j7pzajs0zrlfajz141qkv2ysr"; depends=[ggplot2 oaColors]; }; @@ -14658,14 +14900,14 @@ in with self; { oc = derive2 { name="oc"; version="1.2.1"; sha256="0g4ij5g2xkkd73srm21b2xc170rgwbdsdx2qjkp3pr30axb0bf91"; depends=[pscl]; }; occ = derive2 { name="occ"; version="1.1"; sha256="1aka29qqwbd494kvi15yyyqkb9hks4ky2gcvykxhx2drm2fnsn4g"; depends=[]; }; occCite = derive2 { name="occCite"; version="0.5.6"; sha256="08bc0pi2i2fmc9fcmir150b7g8jnd58q3qaakw2gk25yjy14rp7j"; depends=[bib2df BIEN curl DBI dplyr ggplot2 htmltools httr leaflet lubridate RColorBrewer rgbif rlang RPostgreSQL stringr taxize tidyr viridis waffle]; }; - occumb = derive2 { name="occumb"; version="1.0.3"; sha256="1gvcfhj3lhqj9y9qm3fh0f66bckv4wslpy9ri1dan96lp4qlqx2f"; depends=[checkmate crayon jagsUI knitr]; }; + occumb = derive2 { name="occumb"; version="1.1.0"; sha256="1rfaswipykflwkdiacq66ibbvf2hzzal2ffibsgrl8q1m6frj5k3"; depends=[checkmate crayon jagsUI knitr]; }; occupancy = derive2 { name="occupancy"; version="1.2"; sha256="0j50vg1405n1hp72xqsq1hp3gdbfx5yq9w1zdv6dzjc6vjhbx00d"; depends=[matrixStats]; }; occupationMeasurement = derive2 { name="occupationMeasurement"; version="0.3.2"; sha256="03kq8sbcbb1swnc7rl2qqzmvlhfb7n5ba8q546v657cm35h15rr9"; depends=[data_table digest shiny stringdist stringr text2vec tm]; }; ocd = derive2 { name="ocd"; version="1.1"; sha256="06pyc352pvn85k76z9797gwk0ksbb3snvh6krysp68k3lcygq872"; depends=[]; }; oce = derive2 { name="oce"; version="1.8-2"; sha256="1a9zld3q009v9bvqpkn4fy0qfrsjmcz9j1f0jva75ygi8hdywpyg"; depends=[gsw Rcpp]; }; oceCens = derive2 { name="oceCens"; version="0.1.2"; sha256="1ckp89n22scmjli30x99iaxgyk41a27v1n9gxjp9n29y66lw71nb"; depends=[survival]; }; oceanexplorer = derive2 { name="oceanexplorer"; version="0.1.0"; sha256="07l2la7nrqj8bsyv0flyjs08wishlvq6v2hx5n1g9kag4bcfl6vz"; depends=[bslib dplyr DT fs ggplot2 glue maps miniUI ncmeta purrr rlang RNetCDF rstudioapi sf shiny shinyFeedback shinyjs stars thematic waiter]; }; - oceanic = derive2 { name="oceanic"; version="0.1.6"; sha256="12lrn13xfrxny8nqhjh5qg61bx1y8akyqxf7slbpg9npbwp04f1n"; depends=[broom ggplot2 maps sf sp spData]; }; + oceanic = derive2 { name="oceanic"; version="0.1.7"; sha256="0nfz257i0gfkqvnpi4gaki79mgh1ff6h075dyylk0fs0gw01dddm"; depends=[broom ggplot2 maps sf sp spData]; }; oceanis = derive2 { name="oceanis"; version="1.8.5"; sha256="13zdzqjlf5pihji6np9a3m2j5ycy4jvfl75knzry2ir78zr9ngj7"; depends=[classInt dplyr DT ggplot2 htmlwidgets leaflet leaflet_extras lwgeom sf shiny shinyBS shinyjs shinythemes stringr webshot zip]; }; oceanmap = derive2 { name="oceanmap"; version="0.1.6"; sha256="12ppcqk2s14p7hg0a6b3hgnz90dxn3kagfgkpykz6ks93vjy8pd7"; depends=[abind extrafont fields ggedit ggplot2 lubridate mapdata maps ncdf4 plotly plotrix raster reshape2 sf sp]; }; oceanwaves = derive2 { name="oceanwaves"; version="0.2.0"; sha256="1v4gj4ippv1l3r77z2ic19x5zi5lpsh5wihaqay3264zhpb3kv9a"; depends=[bspec ggplot2 signal]; }; @@ -14673,13 +14915,12 @@ in with self; { ocf = derive2 { name="ocf"; version="1.0.0"; sha256="04d0j863a2zqj3v9s9iwlc4v7fxpp6cydpphxcfr6n22f8ciq5bd"; depends=[glmnet Matrix orf ranger Rcpp RcppEigen stringr]; }; ockc = derive2 { name="ockc"; version="1.1"; sha256="1iqv9vjdcv96a8k5ccrh6r3jpjq39g4g0qjhb4hzvfv17p28rpcb"; depends=[flexclust modeltools]; }; oclust = derive2 { name="oclust"; version="0.2.0"; sha256="08247vcjs7hhzbj69f2x39n5y5ycns0qd7pdlvpwyn4j7yd1ji31"; depends=[dbscan entropy MASS mclust mixture mvtnorm]; }; - ocomposition = derive2 { name="ocomposition"; version="1.1"; sha256="0fk8ia95yjlvyvmjw7qg72piqa40kcqq9wlb3flc6a81pys1ycb5"; depends=[bayesm coda]; }; ocp = derive2 { name="ocp"; version="0.1.1"; sha256="0q52s8j3z3xwnma3sxx6019qxid66bf0a43w4g8xjagplwps57dx"; depends=[]; }; ocs4R = derive2 { name="ocs4R"; version="0.2-3"; sha256="09zl9jl1kzvyq0wccp41j32pr3as93qh250iaawhwkpcswjpyl89"; depends=[curl httr jsonlite keyring openssl R6 XML]; }; octopus = derive2 { name="octopus"; version="0.4.2"; sha256="0a24czpsvq5xpr3g9m6d2bsd3dv5jcr2m724gz4z3c56f4xbxd8b"; depends=[bslib data_table DBI dplyr DT glue httr janitor rio shiny shinyAce shinyjs]; }; octopusR = derive2 { name="octopusR"; version="1.0.1"; sha256="1hah1zphwrvj1kx344s9nxq8bw4q358fz9j487hi6dkfhjvg7j21"; depends=[askpass cli glue httr2 rlang tibble]; }; od = derive2 { name="od"; version="0.4.4"; sha256="0msfgqcx2qh728fqzdkhaab7b5na8wa3sga7hfzvxjy996bdfliw"; depends=[sfheaders vctrs]; }; - odbc = derive2 { name="odbc"; version="1.4.2"; sha256="00x6cwfga2x3mbjf849wj96v3mwaa1nz1kr6pa9k3bm1k32zkym7"; depends=[bit64 blob DBI hms lifecycle Rcpp rlang]; }; + odbc = derive2 { name="odbc"; version="1.5.0"; sha256="1c49209bf1swsk5mhwb4zxymlg5dha9rg500nq83kbgib6ikkk9f"; depends=[bit64 blob cli DBI hms lifecycle Rcpp rlang]; }; odbr = derive2 { name="odbr"; version="0.1.0"; sha256="03bdhmya86whrzijc8h6gvd4yzmivdskm42a80n4ryqn4szfyrpd"; depends=[data_table fs haven piggyback R_utils sf usethis]; }; oddnet = derive2 { name="oddnet"; version="0.1.1"; sha256="0wa3vjjsn9f60b4c2l43sy41x0qhkbsg0yjy1ki6pgflgavr9ldg"; depends=[dplyr fable fabletools igraph lookout pcaPP rlang tibble tidyr tsibble]; }; odds_converter = derive2 { name="odds.converter"; version="1.4.8"; sha256="09s8pg55gpsxmrbimzg5rsr1n07la93781sar6vab5p9zn9zxgx4"; depends=[]; }; @@ -14691,9 +14932,8 @@ in with self; { odetector = derive2 { name="odetector"; version="1.0.1"; sha256="094i6ykv3s0c5yhdnlgpkz1wb6pr9k6r3vsh7zgkxyy5iayi6dlv"; depends=[ppclust]; }; odin = derive2 { name="odin"; version="1.2.5"; sha256="1fczgf3x35inlyhkw1h4mf8j9alrv4w98b9jfmbc2a9q29gi161p"; depends=[cinterpolate deSolve digest glue jsonlite R6 ring withr]; }; odk = derive2 { name="odk"; version="1.5"; sha256="0fcnr4c1clwx1sk6fgg4cx506gdi90n2h05g0i47p4s5bra0qwwl"; depends=[gsheet openxlsx]; }; - odpc = derive2 { name="odpc"; version="2.0.5"; sha256="0cbkq8parb8br1j386xk5mgwz8gkmwvp79f9sjvzhs7z6wlbp0pv"; depends=[doParallel foreach forecast MASS Rcpp RcppArmadillo]; }; odr = derive2 { name="odr"; version="1.4.4"; sha256="037v6523kbl0izfzyg6lp6h4r5p8w23dp8r1fpx07wyr34q2w8vn"; depends=[]; }; - oeli = derive2 { name="oeli"; version="0.4.1"; sha256="0jmzi65d565p2cifsj20c5q08v79hzda766g2afr698fxhvdjkrw"; depends=[benchmarkme checkmate cli ggplot2 hexSticker latex2exp Rcpp RcppArmadillo rprojroot showtext sysfonts testthat usethis]; }; + oeli = derive2 { name="oeli"; version="0.5.0"; sha256="0v6pk49arigm9v979in9h06pqhz3gz56a1d7vcbd1pxqa8y4ypaz"; depends=[benchmarkme checkmate cli ggplot2 hexSticker latex2exp Rcpp RcppArmadillo rprojroot showtext sysfonts testthat usethis]; }; oem = derive2 { name="oem"; version="2.0.11"; sha256="0p9s68zgma9mcjnz0xg6h07yp38rqj209asg18hji8528iazbv8g"; depends=[BH bigmemory foreach Matrix Rcpp RcppArmadillo RcppEigen]; }; oenb = derive2 { name="oenb"; version="0.0.2"; sha256="1jgxw7ycx2lcdzglg9nix8k08fs4r6i5jdsjzrd6w1dg6smsinl5"; depends=[dplyr XML]; }; oesr = derive2 { name="oesr"; version="0.1.0"; sha256="078jjvm9d0g8jaab0x2z4h7h8m2pznamiglhkwv07xc65cskjmpb"; depends=[broom dplyr estimatr extrafont ggplot2 rlang sandwich tibble]; }; @@ -14701,9 +14941,10 @@ in with self; { oews2021 = derive2 { name="oews2021"; version="1.0.0"; sha256="0b03jqn7bz528qky6h35h3kxr6pnfqpllc4h2lgpf790slsfc054"; depends=[]; }; ofGEM = derive2 { name="ofGEM"; version="1.0"; sha256="0xdkl8k12an9pdy6i5nay4m2iakrwsp0lr3zl8gphii75j0ywz7k"; depends=[CompQuadForm forestplot MASS]; }; officedown = derive2 { name="officedown"; version="0.3.1"; sha256="0ymidhrnbk8z7ni4y0ngizyc7d3f35nmhmhpfqw8jg9faizich8z"; depends=[knitr memoise officer rlang rmarkdown rvg uuid xml2 yaml]; }; - officer = derive2 { name="officer"; version="0.6.5"; sha256="1lzpabpdrwx3331b9qn43376r25bzgph1j9gbxzqjhzr1h871cpb"; depends=[openssl R6 ragg uuid xml2 zip]; }; + officer = derive2 { name="officer"; version="0.6.6"; sha256="04mlmq64gjdicdlai78iy28n8z64p3k4mnk4k381znlrj9x3zz7i"; depends=[openssl R6 ragg uuid xml2 zip]; }; offlineChange = derive2 { name="offlineChange"; version="0.0.4"; sha256="005afrm4ki4zz3zkgrf8c1v9gf5cjhc5g50mjkqya3r8npaccwq2"; depends=[Rcpp]; }; - offsetreg = derive2 { name="offsetreg"; version="1.0.0"; sha256="1bnb41q8n3bmh73r44mlf70icy7mma1rixdhxkz6xmmss5cs88zp"; depends=[generics glue parsnip poissonreg rlang]; }; + offsetreg = derive2 { name="offsetreg"; version="1.1.0"; sha256="1nxiaz5p3s4i3dxl3cph5c8aily3d6g212086wrxy38jyqk55xkm"; depends=[generics glue parsnip poissonreg rlang]; }; + ofpetrial = derive2 { name="ofpetrial"; version="0.1.1"; sha256="1wid8d4m8bk087z8fi4ls493p1g30cymyl5xcbzcv0an2rkd739j"; depends=[bookdown data_table dplyr ggExtra ggplot2 ggpubr leaflet lwgeom magrittr purrr rmarkdown sf terra tibble tidyr tmap zip]; }; oglmx = derive2 { name="oglmx"; version="3.0.0.0"; sha256="13axmhbqhv4kkcdsdmp9r7p0d0kyqlsaqgyyllbkxlxb4hfz79b6"; depends=[maxLik]; }; ogrdbstats = derive2 { name="ogrdbstats"; version="0.5.0"; sha256="140i4wippqr1260a1c4syg6lfspkf9q8rifnalf6iaaqx2bz4yfq"; depends=[alakazam argparser Biostrings bookdown ComplexHeatmap data_table dplyr ggplot2 gridExtra magrittr RColorBrewer scales stringdist stringr tidyr tigger]; }; ohenery = derive2 { name="ohenery"; version="0.1.1"; sha256="0i7cc110c30y7dm86srh2xkikkmlr28mvy0kkjxywxmiwnrsmzjq"; depends=[dplyr magrittr maxLik Rcpp]; }; @@ -14715,6 +14956,7 @@ in with self; { ojsr = derive2 { name="ojsr"; version="0.1.2"; sha256="0nwdws9kqnya9qjc939b7ksrf7ri6d25zzcdxhyhabirhnrqdg7m"; depends=[dplyr magrittr purrr rlang rvest tidyr urltools xml2]; }; okxAPI = derive2 { name="okxAPI"; version="0.1.1"; sha256="0wysfpkij9l265clw6qi4zpr1c860idxfp82xz2nmy1l5b2n8ri0"; depends=[base64enc data_table digest httr jsonlite R6 websocket]; }; olctools = derive2 { name="olctools"; version="0.3.0"; sha256="1gbchwynvmryarz32f24v56kj57h7x6nrrm878fkjkpq140cqwzz"; depends=[Rcpp]; }; + ollamar = derive2 { name="ollamar"; version="1.1.1"; sha256="0zw71221fyjczkfj47hbs2ddl7p8h8igzp9zijfb5c6m4qg03gbl"; depends=[glue httr2 jsonlite tibble]; }; ollg = derive2 { name="ollg"; version="1.0.0"; sha256="1xjfn3hlmmx65kphchhxqa9fx6qmkiyx24lp19si1y3v92wdv2i9"; depends=[]; }; ollggamma = derive2 { name="ollggamma"; version="1.0.2"; sha256="1990hr9gww636xr4gkvc816hd0pc78nw3ypbzflkh5g3pmsn7bc2"; depends=[]; }; olr = derive2 { name="olr"; version="1.1"; sha256="1l6m2gbglh8idy4k2q23qgfb7in1a6pnwiji1gbygfan6paw4xza"; depends=[plyr]; }; @@ -14722,9 +14964,9 @@ in with self; { omics = derive2 { name="omics"; version="0.1-5"; sha256="1y2x33mfgq98nglhvpr1wq1v6nfiq4njy2yac47x72rpwxsj9vb1"; depends=[lme4 pheatmap]; }; omicsTools = derive2 { name="omicsTools"; version="1.0.5"; sha256="0k6cpdxafz6x5360m97x8mvvi09mb36yx42slkq6nr4axpm089pf"; depends=[bs4Dash config dplyr DT golem magrittr readr shiny tibble]; }; omicwas = derive2 { name="omicwas"; version="0.8.0"; sha256="03l53vbsard0hpaffcaa9l1aa3nh3w16j00k2jz2jqrrg02z0d7h"; depends=[broom data_table dplyr ff glmnet magrittr MASS matrixStats purrr rlang tidyr]; }; - omnibus = derive2 { name="omnibus"; version="1.2.9"; sha256="1shd5a519vac8m80869hssjfhl3i5k9ia0z2a0dgfbqsdd591nsv"; depends=[]; }; - omock = derive2 { name="omock"; version="0.1.0"; sha256="10fnmrsh1002sg8s7l7ksy5k4kyd4lkh1d3c6aijq6fw2523cqsk"; depends=[cli dplyr lubridate omopgenerics purrr rlang snakecase stringr]; }; - omopgenerics = derive2 { name="omopgenerics"; version="0.1.2"; sha256="0xawvpkvzffsqs378sl2h79014vadmwxhr98wgl2kj41ywyiif29"; depends=[cli dbplyr dplyr glue rlang snakecase stringr tidyr]; }; + omnibus = derive2 { name="omnibus"; version="1.2.13"; sha256="0a528lk2snhav6yw6z1sx6il5sazjqwfs2vb2c6smy9frs3vlgq7"; depends=[]; }; + omock = derive2 { name="omock"; version="0.2.0"; sha256="14qqvjviwr45x5g9i036pkd9y0qjaqhx27win3j1xb4c8mj20k02"; depends=[cli dplyr lubridate omopgenerics purrr rlang snakecase]; }; + omopgenerics = derive2 { name="omopgenerics"; version="0.2.1"; sha256="15vqym797spa9fcxq25is2fjc5q6id4h731vh720wjg857aja4h0"; depends=[cli dbplyr dplyr glue rlang snakecase stringr tidyr]; }; ompr = derive2 { name="ompr"; version="1.0.4"; sha256="02glc09yrdvwls0i8ik1wh6fp3qa9ry55xd3yy3xk0rav8r3hcj3"; depends=[data_table fastmap lazyeval listcomp Matrix rlang]; }; ompr_roi = derive2 { name="ompr.roi"; version="1.0.2"; sha256="1w0cyw5ixkri8523vdcfrlaf49farhgdf1bxiizwk5gppb3w5ibl"; depends=[Matrix ompr ROI slam]; }; omsvg = derive2 { name="omsvg"; version="0.1.0"; sha256="018sphpmmgpq5alag0il83q51f3r3jx3pnnzjrvg4gn6691nkwvz"; depends=[dplyr gt htmltools magrittr rlang sass xml2]; }; @@ -14734,7 +14976,7 @@ in with self; { onbrand = derive2 { name="onbrand"; version="1.0.5"; sha256="1iyizky2vrdpl325qg4mllzgs2aabshpp7cshvldfyxnlw4dxvrn"; depends=[digest dplyr flextable ggplot2 magrittr officer rlang stringr yaml]; }; onc_api = derive2 { name="onc.api"; version="2.0.1.0"; sha256="10scbhg6aniqzrbkblhfhz9ni710xzppbzfrr4wrhsy1z5y2nfwc"; depends=[anytime crayon httr humanize lubridate stringi testthat tictoc]; }; once = derive2 { name="once"; version="0.4.1"; sha256="0yshpww3rq68m0qx7kid3zlcxi1nf81vmziclyvpg61aikj8fhx5"; depends=[magrittr]; }; - oncoPredict = derive2 { name="oncoPredict"; version="0.2"; sha256="1slq5vp78n5hcq24vlg35r6xansdgriyjw8y9iyb0lj3cdaq38c3"; depends=[BiocGenerics car gdata genefilter GenomicFeatures GenomicRanges glmnet IRanges maftools org_Hs_eg_db pls preprocessCore readxl ridge S4Vectors sva tidyverse TxDb_Hsapiens_UCSC_hg19_knownGene]; }; + oncoPredict = derive2 { name="oncoPredict"; version="1.2"; sha256="0cp0b0d5nbanflp1jrkvdcybjii4lzv275d880wbadsx960rax2l"; depends=[BiocGenerics car GenomicFeatures GenomicRanges glmnet IRanges org_Hs_eg_db pls preprocessCore ridge S4Vectors sva TCGAbiolinks tidyverse TxDb_Hsapiens_UCSC_hg19_knownGene]; }; oncomsm = derive2 { name="oncomsm"; version="0.1.4"; sha256="1crjpfa7yxcafnhsxs2sbf153lsr9ffaqdxjxp0zkd7hiash0mfm"; depends=[BH checkmate dplyr furrr ggplot2 magrittr purrr Rcpp RcppEigen RcppNumerical RcppParallel rlang rstan rstantools StanHeaders stringr tibble tidyr]; }; oncrawlR = derive2 { name="oncrawlR"; version="0.2.0"; sha256="0cm26diaf3jlzfrpgh13q0hakakmj6vy41wk9z0w81az4jcg9sn9"; depends=[caret DALEX dplyr e1071 formattable fs ggplot2 htmltools jsonlite pdp pROC RCurl readr rjson rlang rlist scales sparkline tidyr webshot xgboost]; }; ondisc = derive2 { name="ondisc"; version="1.0.0"; sha256="071jrldclkaz5lfp3k5fh1ilpgvvcnakh2vvnr69n3pri9dl3fls"; depends=[crayon data_table dplyr magrittr Matrix Rcpp readr rhdf5 Rhdf5lib]; }; @@ -14744,7 +14986,7 @@ in with self; { onemap = derive2 { name="onemap"; version="3.0.0"; sha256="0h5bi4zyiglic60msrkfny28k1rb7avqbs87ipzwwayb452b970c"; depends=[dendextend dplyr ggplot2 ggpubr htmlwidgets plotly princurve RColorBrewer Rcpp rebus reshape2 smacof tidyr vcfR]; }; onetime = derive2 { name="onetime"; version="0.2.0"; sha256="1yyi8r8dniavsjlqmj5z9x52av2qz0iz01i2r7qx69apqbkwd57b"; depends=[filelock rappdirs]; }; onewaytests = derive2 { name="onewaytests"; version="3.0"; sha256="0qmzgg869pdj3sfi8znd02z62px9n04fxl1psrfw8mxl4ainp0v7"; depends=[car ggplot2 moments nortest wesanderson]; }; - onion = derive2 { name="onion"; version="1.5-0"; sha256="07q5wwphb6jsk7ya7hgsf5782yalvhyc7h43hsd9rg4rhpmy8in9"; depends=[emulator]; }; + onion = derive2 { name="onion"; version="1.5-3"; sha256="0ja3nqi684c314hh9y5lp59bdfi01vycz17ridw1xlzh89na8c60"; depends=[emulator freealg mathjaxr Matrix]; }; onlineBcp = derive2 { name="onlineBcp"; version="0.1.8"; sha256="1pwpnmpgh3hl8mv1pbn577dn832nxbsfaxn3hqghvs4dn06lwngf"; depends=[VIM]; }; onlineCOV = derive2 { name="onlineCOV"; version="1.3"; sha256="04ikvsd76f6xhja7djyv433m88lfj2vf0y9qi6x1s4i9kh8xkbz9"; depends=[]; }; onlinePCA = derive2 { name="onlinePCA"; version="1.3.2"; sha256="1xc9kjqvpspymywzaykw4nw14y43fi4ydwj4jfhvx5ws51f7y9i8"; depends=[Rcpp RcppArmadillo RSpectra]; }; @@ -14756,50 +14998,50 @@ in with self; { onpoint = derive2 { name="onpoint"; version="1.0.5"; sha256="1ib7bj8y1ykrsl84bjz0y6ncc9rj5pazad9541vpn3xpr7c11xj1"; depends=[ggplot2 spatstat_explore spatstat_geom spatstat_random]; }; onsr = derive2 { name="onsr"; version="1.0.2"; sha256="07aa0rq41vw4xy76fwwjwcvl2bv15phh5bsk4xb3j7gahy6g9xxi"; depends=[httr jsonlite readr tibble]; }; onsvplot = derive2 { name="onsvplot"; version="0.3.2"; sha256="06jkq25ivi8qn3c46616a7z47g2qfjpvnfwlzjx8shw4c36j5737"; depends=[ggplot2]; }; + onsvtables = derive2 { name="onsvtables"; version="0.1.0"; sha256="181z69m5ws74wzrka6xb9cxz3yr1m7z57yyr401mxiz4cd466xlw"; depends=[gt]; }; ontoFAST = derive2 { name="ontoFAST"; version="1.0.0"; sha256="0l3d8bp86849rp0qrs1dfv7bjmrfdqvahb1x656vk69fi20722ma"; depends=[dplyr ontologyIndex pbapply plyr shiny shinydashboard stringr sunburstR usethis visNetwork]; }; ontologics = derive2 { name="ontologics"; version="0.7.0"; sha256="1ggdnydxl5xdh8vjjxna778d3c3wvw1rcvvjdcnrllms8i30cvga"; depends=[beepr checkmate dplyr fuzzyjoin httr magrittr purrr rdflib readr rlang stringr tibble tidyr tidyselect]; }; ontologyIndex = derive2 { name="ontologyIndex"; version="2.12"; sha256="0gf0z0vgc1f4f70f2zpwz9bka0gbgbj4w3fcxncv1b7lbrxddrd8"; depends=[]; }; ontologyPlot = derive2 { name="ontologyPlot"; version="1.7"; sha256="06ynryr4yx2mg85v12vhggx795hwwwfniskv3dgmb5nmrxhvh26m"; depends=[ontologyIndex paintmap Rgraphviz]; }; - ontologySimilarity = derive2 { name="ontologySimilarity"; version="2.5"; sha256="035z572lbsfcnr9c0hl8gir1kgk0dw8dxzr3v8dqd93k6jr6kaxb"; depends=[ontologyIndex Rcpp]; }; + ontologySimilarity = derive2 { name="ontologySimilarity"; version="2.7"; sha256="03fga6xqvxpa3hwf5pb0dzyz4scz2szvbgm8bsj1wl35gl477cjp"; depends=[ontologyIndex Rcpp]; }; ontophylo = derive2 { name="ontophylo"; version="1.1.3"; sha256="1pb8w39ckx2ffchrrxp1jqs555b5bfz7cv5kbwgyzpfshv9s0ca4"; depends=[ape dplyr fANCOVA ggplot2 grImport magrittr ontologyIndex phytools purrr RColorBrewer stringdist tibble tidyr truncnorm]; }; - oolong = derive2 { name="oolong"; version="0.6.0"; sha256="1siqix9npnhk7flc1dafpg6xpvn8i1fkvid2yfpk966qx4cg2ggk"; depends=[cli cowplot digest ggplot2 irr purrr quanteda R6 seededlda shiny tibble]; }; + oolong = derive2 { name="oolong"; version="0.6.1"; sha256="10fn3llypnglz6i02pii7i4lki0hrh46b76y8wd7df8j4bcixnn5"; depends=[cli cowplot digest ggplot2 irr purrr quanteda R6 seededlda shiny tibble]; }; oompaBase = derive2 { name="oompaBase"; version="3.2.9"; sha256="1cmw2s5dznmv675484jgvkzgvi6vhg0zbxsq6zhpqsisf672pjhl"; depends=[cluster]; }; - oompaData = derive2 { name="oompaData"; version="3.1.3"; sha256="0gdp7bghgpz3q0h06w8r926x7wkpcvkpyf0v5qfi1qixbpvk5fdf"; depends=[]; }; + oompaData = derive2 { name="oompaData"; version="3.1.4"; sha256="0g9d551djqa67y2l9nmajnsgf7kys4jcvgi3yx7az7jgm44j8986"; depends=[]; }; ooplah = derive2 { name="ooplah"; version="0.2.0"; sha256="1p74jh9g62yicrw0lhpbn0diqi2myl24z28kpd2b3mglyffadr0b"; depends=[R6]; }; oosse = derive2 { name="oosse"; version="1.0.11"; sha256="08nx25j5m6vqg9hqns6psldfdmsb81ixjlzdhxpx392ad0j4yfbx"; depends=[BiocParallel doParallel Matrix Rdpack]; }; oottest = derive2 { name="oottest"; version="0.9.1"; sha256="1y0k0jcncjkcgfxybs2yyfcc7ywa49jnalrw8mn7m04h58gqg77x"; depends=[]; }; - opGMMassessment = derive2 { name="opGMMassessment"; version="0.3.5"; sha256="09ii297524q2bgw2iqvd4s5bhnmm6gm5dh4lxskq1yxynfqdl77r"; depends=[AdaptGauss caTools cluster ClusterR DataVisualizations DistributionOptimization doParallel dplyr foreach ggplot2 mclust mixAK mixtools multimode NbClust rlang]; }; + opGMMassessment = derive2 { name="opGMMassessment"; version="0.4"; sha256="0qnxq9i0spygz2lmjb23y94r9cgvkkariv0v8llqdb6l89bhfdqm"; depends=[AdaptGauss caTools cluster ClusterR DataVisualizations DistributionOptimization doParallel dplyr foreach ggplot2 mclust mixAK mixtools multimode NbClust rlang]; }; opa = derive2 { name="opa"; version="0.8.3"; sha256="09k3bkh2glkl0sf5pcbii9cxq6ijpdsayncb02dm0ing2bh9kh0m"; depends=[lattice Rcpp RcppArmadillo]; }; opalr = derive2 { name="opalr"; version="3.4.1"; sha256="14pv1rbmmhgcid2gcs1hxwr8a84jn6cyrqpfjlw10ia76qd63qkk"; depends=[httr jsonlite labelled mime progress readr tibble]; }; - opdisDownsampling = derive2 { name="opdisDownsampling"; version="0.8.3"; sha256="0aq7ghy5syiic0nplnp74qhyw1yxih9bsfc0jgvz45zvcsp4gdwx"; depends=[benchmarkme caTools doParallel foreach memuse pracma twosamples]; }; + opdisDownsampling = derive2 { name="opdisDownsampling"; version="1.0.1"; sha256="10r6s87ffxzdcrwfwxwikxilpd4ccksma9g9sbz80l3mhlakvskl"; depends=[caTools doParallel foreach pbmcapply pracma twosamples]; }; openCR = derive2 { name="openCR"; version="2.2.6"; sha256="08cqv6xxv35hzllab0glb42h54racgqk0x3dvam6lk7c561kbas4"; depends=[abind BH MASS nlme plyr Rcpp RcppParallel secr stringr]; }; openEBGM = derive2 { name="openEBGM"; version="0.9.1"; sha256="19q5xlvgc91mcr6sjzppgkmvdlfb6cr7rs952i2yys3w7ylwk3bj"; depends=[data_table ggplot2]; }; openMSE = derive2 { name="openMSE"; version="1.0.0"; sha256="15jp9hybnkwmnkcqawhpd3y3imq6wfxxzxzh90yx4cvzky36hf89"; depends=[crayon DLMtool MSEtool SAMtool]; }; openNLP = derive2 { name="openNLP"; version="0.2-7"; sha256="15yl74wv6w1d2wwpn1xlkkpam3c62977gnqal651fv623v29gg35"; depends=[NLP openNLPdata rJava]; }; openNLPdata = derive2 { name="openNLPdata"; version="1.5.3-5"; sha256="03a194yjzlxymq64c6pd28ja71gv2z5465hb7qmxbw0gqpirz3l0"; depends=[rJava]; }; - openSkies = derive2 { name="openSkies"; version="1.1.6"; sha256="03nlbmxp36z82myrbamwl1zngsnfxfw80niisapv53n605p4lrg1"; depends=[cluster dbscan ggmap ggplot2 httr magick R6 ssh xml2]; }; + openSkies = derive2 { name="openSkies"; version="1.2.1"; sha256="0ky11gpgnf2afv6kzhwbzwzrmril99ixxxzzmav3h9hzcig3igyj"; depends=[cluster DBI dbscan ggmap ggplot2 httr magick R6 RPresto ssh xml2]; }; openVA = derive2 { name="openVA"; version="1.1.2"; sha256="0ywf9hh4liz992ym1xdqpk4pnywy9azasyvqdy3ih8idmj3y5h0d"; depends=[cli crayon ggplot2 InSilicoVA InterVA4 InterVA5 Tariff]; }; openai = derive2 { name="openai"; version="0.4.1"; sha256="1fi1nc9c7kfnig6b5ifpb1v9r3gxszk984rwyq7i1lb6s5jv0b9z"; depends=[assertthat glue httr jsonlite lifecycle magrittr]; }; openair = derive2 { name="openair"; version="2.18-2"; sha256="1pw4bdqkd515n7fdcjavjmanhpaywxamzywgiaz4nk5bqq5mh84b"; depends=[cli cluster dplyr hexbin lattice latticeExtra lubridate mapproj MASS mgcv purrr Rcpp readr rlang tibble tidyr]; }; - openairmaps = derive2 { name="openairmaps"; version="0.8.1"; sha256="14jb8a3i5ywzfqlqgy6smcfrj7lrq4fzamvcwdp9za5cxk9yi8cj"; depends=[cli dplyr forcats ggmap ggplot2 ggtext leaflet lifecycle lubridate magrittr mgcv openair purrr rlang sf stringr tibble tidyr]; }; - openaistream = derive2 { name="openaistream"; version="0.2.0"; sha256="1wafn299pv6bwk3qbzvfqi0l3x8639dx3cgz99a8vkrv5n68y47c"; depends=[curl httr2 iterators jsonlite R6]; }; - openalexR = derive2 { name="openalexR"; version="1.2.3"; sha256="1ww45blq54lq55ypassmanabnfs8lv2p72gh6qlmha45mnhkwh51"; depends=[httr jsonlite progress tibble]; }; + openairmaps = derive2 { name="openairmaps"; version="0.9.0"; sha256="1g3jxks2qvys3rv5z4lz0889fq5b5wyjmzfgcj6pl3l67lgy5yj1"; depends=[cli dplyr forcats ggplot2 ggspatial ggtext leaflet lifecycle lubridate magrittr mgcv openair prettymapr purrr rlang rosm sf stringr tibble tidyr]; }; + openaistream = derive2 { name="openaistream"; version="0.3.0"; sha256="0zihkpq6p7a3n0qdwpazds4qbpagk7zh6ziflm9194vbygyskv2z"; depends=[curl httr2 iterators jsonlite R6]; }; + openalexR = derive2 { name="openalexR"; version="1.3.1"; sha256="1hhsqzplcp0xr70q9g5k45ra92c3i9rnk4xdbjnjzwyqhmjf1fiw"; depends=[httr jsonlite progress tibble]; }; openbankeR = derive2 { name="openbankeR"; version="0.1.1"; sha256="04jh3nnp53dzbk96dcz0xi67jqmp66mzbj81cy8mhhd2rl5ry9cj"; depends=[dplyr glue httpcode httr jsonlite magrittr tidyr]; }; openblender = derive2 { name="openblender"; version="0.5.81"; sha256="01akixxj04kgrxhv04icrivfpnipnpg9j62i3y19q3jkl9846lh1"; depends=[httr jsonlite]; }; opencage = derive2 { name="opencage"; version="0.2.2"; sha256="1sjkpp6cj6ivd68p6ql6vwgdvy0fwfkjv84wgwgb4i7f4mnxgnff"; depends=[crul dplyr jsonlite lifecycle memoise progress purrr ratelimitr rlang tibble tidyr withr]; }; - opencpu = derive2 { name="opencpu"; version="2.2.11"; sha256="1hdvfbzc8xmv8hrmchad590f91s4vq1nq83wi2ffh4n7q6ixr03s"; depends=[brew curl evaluate httpuv jsonlite knitr mime openssl protolite rappdirs remotes rlang sys vctrs webutils zip]; }; + opencpu = derive2 { name="opencpu"; version="2.2.12"; sha256="144rq0lyag4b93gshjaf4zghshnvx5vcbnahy4x43f22r0zq5gkv"; depends=[brew curl evaluate httpuv jsonlite knitr mime openssl protolite rappdirs remotes rlang sys vctrs webutils zip]; }; opencv = derive2 { name="opencv"; version="0.4.0"; sha256="0bplljn5qpgb3yp3jlmr99vrffqr53q8hlznbzpmj78kn5f1j71y"; depends=[magrittr Rcpp]; }; opendatatoronto = derive2 { name="opendatatoronto"; version="0.1.5"; sha256="1fiviazs0ydxvmsqaayhwnxf4wl4sx1psn8i5mpis7218d9ihagy"; depends=[ckanr curl magrittr readxl sf tibble xml2]; }; opendotaR = derive2 { name="opendotaR"; version="0.1.4"; sha256="17cygsw3nkg6zincfrcdh1509rlz3n5zrv9wvv7mjngm61sn79nf"; depends=[dplyr jsonlite lubridate]; }; openeo = derive2 { name="openeo"; version="1.3.1"; sha256="02rm34mgjhcb3pp71x0rspyz7cmpmj4g5rs93xnly304il8v0rx2"; depends=[base64enc htmltools httr2 IRdisplay jsonlite lubridate R6 rlang sf]; }; - openintro = derive2 { name="openintro"; version="2.4.0"; sha256="1svvlhdnv8dvqwphsn83asfd5xzvvar2bz334aqndqx76dv9j88j"; depends=[airports cherryblossom ggplot2 readr rmarkdown tibble usdata]; }; + openintro = derive2 { name="openintro"; version="2.5.0"; sha256="0d9x109806ylay80ih6zrfqqjylbi0ralr9k7rz6xar40rimzb5z"; depends=[airports cherryblossom ggplot2 readr rmarkdown tibble usdata]; }; openmeteo = derive2 { name="openmeteo"; version="0.2.4"; sha256="147zc2mn9ma6rkdz5czkmq8pp9slkvz44vf00mi64jkq2gp9kfpx"; depends=[dplyr httr testthat tibble tibblify tidyr yaml]; }; openmetrics = derive2 { name="openmetrics"; version="0.3.0"; sha256="0bcljsirlkxn0h87j2g2jb6spcik84h7nms06mcj40ckx188yr82"; depends=[R6]; }; - openscoring = derive2 { name="openscoring"; version="1.0.1"; sha256="0cyay8gahv8xyssyjhc18myvzi060rvlkakf69w2xpfkrfjsk2rf"; depends=[cli glue httr jsonlite lifecycle rlang stringr]; }; - openssl = derive2 { name="openssl"; version="2.1.1"; sha256="1p2bnr4z4vx3yqq5isqb3z4d9vg2isiz8i0h3vxdb5ramzwjd9zs"; depends=[askpass]; }; - opentripplanner = derive2 { name="opentripplanner"; version="0.5.1"; sha256="04qf01jy675glwnxjf430z43c9hi5dxjv6g2h85ny778hzvhq087"; depends=[checkmate curl data_table geodist googlePolylines progressr purrr RcppSimdJson rjson sf sfheaders]; }; + openssl = derive2 { name="openssl"; version="2.2.0"; sha256="1cyx2yv2l446xwf0a0im70zfd6jlpg8113ncgdydajyvx1mb9f0q"; depends=[askpass]; }; + opentripplanner = derive2 { name="opentripplanner"; version="0.5.2"; sha256="0h0dq72gfiyhnl9j8pdr295a93xcd59mqag4ca5hnvq8v93hn0cc"; depends=[checkmate curl data_table geodist googlePolylines progressr purrr RcppSimdJson rjson sf sfheaders]; }; openxlsx = derive2 { name="openxlsx"; version="4.2.5.2"; sha256="0rwvzhk2brhbf1cdpg5jmwiwx5jhr9ybzvnhw0pg4bl3wpkqjw7f"; depends=[Rcpp stringi zip]; }; - openxlsx2 = derive2 { name="openxlsx2"; version="1.4"; sha256="0hrikqbmylr0sbxq478alm290c5a8mlxwxmnhlzxvbmzfbv2ywhl"; depends=[magrittr R6 Rcpp stringi zip]; }; + openxlsx2 = derive2 { name="openxlsx2"; version="1.7"; sha256="0kkkb755z2wqyjszpqsq3db489qblbkq733lr83sj01b00chw0sy"; depends=[magrittr R6 Rcpp stringi zip]; }; opera = derive2 { name="opera"; version="1.2.0"; sha256="09gh0c74y3n25f9p1rya8ybql5mfaqkcnr8i8wwwzfm67vqdfrnh"; depends=[alabama htmltools htmlwidgets pipeR rAmCharts Rcpp RcppEigen Rdpack]; }; operator_tools = derive2 { name="operator.tools"; version="1.6.3"; sha256="1v4dg7xhz24dnp0zxn815x1405ig64ibii6y40la1gvmzcc41dz5"; depends=[]; }; operators = derive2 { name="operators"; version="0.1-8"; sha256="0zgcv2q46qyqv4dhbd33s4044zjw38w8dqfpzs0c1lxjpkil3dnx"; depends=[]; }; @@ -14814,11 +15056,12 @@ in with self; { optbin = derive2 { name="optbin"; version="1.3"; sha256="09pdmbvhwj7g13bqcql70x1c6l1islyasbhxcbqdf1cr7r6ylysz"; depends=[]; }; optedr = derive2 { name="optedr"; version="2.0.0"; sha256="17r0axfh7yjv5xj9060vi5vysnmi38pz5dsvm0fazfcpzzlxnld7"; depends=[cli crayon dplyr ggplot2 nleqslv purrr rlang shiny]; }; optextras = derive2 { name="optextras"; version="2019-12.4"; sha256="1sqkid6h13h8i8wzri26s828ycwlxlwpwxd85r8bw9h8hs1n602r"; depends=[numDeriv]; }; + optiSel = derive2 { name="optiSel"; version="2.0.8"; sha256="1fgh9lb4pmis8wm9vr5p7883xnhx50r5a2swdy2vlhwpgcc3caqz"; depends=[data_table doParallel ECOSolveR foreach kinship2 magic MASS Matrix nadiv optiSolve pedigree plyr pspline purrr quadprog Rcpp RcppArmadillo reshape2 stringr]; }; optiSolve = derive2 { name="optiSolve"; version="1.0"; sha256="0mhl5gdz3y3cs3p6v7z4n50na3sqj0w739gixcf4qgb1ppx0h1xa"; depends=[alabama cccp MASS Matrix nloptr plyr Rcpp shapes stringr]; }; optic = derive2 { name="optic"; version="1.0.1"; sha256="166ngas1zp1ln951n26kmyfj9jcpi2fm2g2yxs9vs4as6fl1yf2n"; depends=[did dplyr future_apply lmtest magrittr MASS purrr R6 rlang sandwich tidyr]; }; optical = derive2 { name="optical"; version="1.7.1"; sha256="1g400s4xbf9c8ss02qhm6q31sv7mrki4a9x1fdjjsyrgmclv9q2s"; depends=[]; }; opticskxi = derive2 { name="opticskxi"; version="0.1"; sha256="1vdz5sgjgyh2nj034w87d2yxcbbg97f1b0vijlwzwjkrfz5knfhl"; depends=[ggplot2 magrittr]; }; - opticut = derive2 { name="opticut"; version="0.1-2"; sha256="1j479wa7mlp62c2y7shha1w7ybhfy8wvjfaz27kmwd1f61ma1g0l"; depends=[betareg MASS mefa4 pbapply pscl ResourceSelection]; }; + opticut = derive2 { name="opticut"; version="0.1-3"; sha256="1knjxfz52gisnkz62m885zf4gn73dnkhc0q2wfvmhj02vqq0sfhf"; depends=[betareg MASS mefa4 pbapply pscl ResourceSelection]; }; optifunset = derive2 { name="optifunset"; version="1.0"; sha256="18pvdl04ln1i0w30ljdb3k86j27zg2nvrn3ws54c1g6zg9haqhbg"; depends=[]; }; optigrab = derive2 { name="optigrab"; version="0.9.2.1"; sha256="1c3q4kx8rkgpjsy0hy2w2dd9kv51avnw1ab82hzmjgngfnvaig0n"; depends=[magrittr stringi]; }; optim_functions = derive2 { name="optim.functions"; version="0.1"; sha256="1la3v8yd9cdichp3mka4x86hr9lynh6qfg7h9ab6cwijw6kzkn6g"; depends=[lhs randtoolbox stringr]; }; @@ -14827,27 +15070,28 @@ in with self; { optimParallel = derive2 { name="optimParallel"; version="1.0-2"; sha256="178ayfaivkbxkghxbg97lx4gl27kxkmgaaw9y8q5206r4cncd6qg"; depends=[]; }; optimStrat = derive2 { name="optimStrat"; version="2.4"; sha256="0p52ly7yfz9jjlhd5912xdv1j01j1ccm57ygp9nz3rks7fi3b5r5"; depends=[cubature mvtnorm shiny]; }; optimalThreshold = derive2 { name="optimalThreshold"; version="1.0"; sha256="1m39q36p7i7z31b90awriq5jf9rfybyw5lj3m1w33v2ssipkzp1n"; depends=[ars coda HDInterval mgcv rjags]; }; - optimall = derive2 { name="optimall"; version="0.1.5"; sha256="15390zp1hacxvm64a3b0c8837q0js1vbwipk5fpvx17p76c24dzv"; depends=[dplyr glue magrittr rlang tibble]; }; + optimall = derive2 { name="optimall"; version="1.1.1"; sha256="0pc7bswfaz0fc9mjr8m29xvm9a1015fb80sr7si65zkkmjhxwldz"; depends=[dplyr glue magrittr rlang tibble]; }; optimbase = derive2 { name="optimbase"; version="1.0-10"; sha256="0hdzbqr03jwy1vz3q9iw0kvii5p9g1vm4c3hs3jxszcj1rgrfm12"; depends=[Matrix]; }; optimg = derive2 { name="optimg"; version="0.1.2"; sha256="0fc7d3g5nxjjcbwh6v5m0ryhanw80v250j8m7j2gv4c9ql4g650d"; depends=[ucminf]; }; optimization = derive2 { name="optimization"; version="1.0-9"; sha256="1pg9a78hhm0h4pfagj13r1dmynv714knhw2dxhzhcvlgk9inpam8"; depends=[colorspace Rcpp]; }; - optimizeR = derive2 { name="optimizeR"; version="1.0.5"; sha256="1izw17wa59kk27bmbamb1nwcd4hhfn5p9hw3ismm48zxcxzz82cy"; depends=[checkmate cli lbfgsb3c oeli R6 TestFunctions ucminf]; }; + optimizeR = derive2 { name="optimizeR"; version="1.1.0"; sha256="07p7bjh0jhg74csh094473dflpc1va4p45laxbdwv3hbxagk1zkx"; depends=[checkmate cli lbfgsb3c oeli R6 TestFunctions ucminf]; }; optimos_prime = derive2 { name="optimos.prime"; version="0.1.2"; sha256="1a76gfzpd2s4gq15cd3frndak7wc6q3xqh9sllkk665031fx6z1h"; depends=[ggplot2 plotly tidyverse]; }; optimsimplex = derive2 { name="optimsimplex"; version="1.0-8"; sha256="1q5hfbiq265q5im6wg78spaqsfj421hpzh8bz51zmi188h6xwnwr"; depends=[optimbase]; }; optimus = derive2 { name="optimus"; version="0.2.0"; sha256="01njyjfrm6kjwx2qq41c0hsgxzydnrmr3538cpbfdn5i0z5blgyx"; depends=[mvabund ordinal]; }; optimx = derive2 { name="optimx"; version="2023-10.21"; sha256="1da4daxgk4kbq1n2mn72482c3j96wba0xf4mzffgasn20ib2swqd"; depends=[nloptr numDeriv pracma]; }; optional = derive2 { name="optional"; version="2.0.1"; sha256="1q7k9rsa7m3ag7mwx88101ksy0c01gk0xl0425jfkwm0d4g5pyy0"; depends=[magrittr]; }; - options = derive2 { name="options"; version="0.1.0"; sha256="0pprbp2pxvgh120f8dahswws44gpdm4f4nlq3h3nvqrlhnspwnb8"; depends=[]; }; + options = derive2 { name="options"; version="0.2.0"; sha256="02qnbipdmnw01f40300pg1ycrcbnr37f8yiqbabm6jznf6r4ihm9"; depends=[]; }; optionstrat = derive2 { name="optionstrat"; version="1.4.1"; sha256="0vidaf888zdls5yxy7637fqg6r39l3rxw9bhn16s4xmag7kawljv"; depends=[]; }; + optiscale = derive2 { name="optiscale"; version="1.2.3"; sha256="06qx6fha6vz46bchqswkdv3blxkpv2zg21kiwnb0rzz66srfkljn"; depends=[lattice]; }; optistock = derive2 { name="optistock"; version="0.0.2"; sha256="1wl637hgdhiyk56xv39bb8m4v6nnlqyy6vgkradf90k084m9q52p"; depends=[]; }; optmatch = derive2 { name="optmatch"; version="0.10.7"; sha256="07bx6bs5kk9pv0a2nsvq5y4bq4z17sa5f54kpxpim476xd8w43rk"; depends=[dplyr Rcpp rlemon tibble]; }; - optparse = derive2 { name="optparse"; version="1.7.4"; sha256="122x490161f836l7mmd021dpylz50qrqdhjcgvkd8wpsjijxd8lk"; depends=[getopt]; }; + optparse = derive2 { name="optparse"; version="1.7.5"; sha256="04jp85jik1zkbb08w44m2h0hqyzd80w4pjnfp1lnwy40ax81gj8c"; depends=[getopt]; }; optpart = derive2 { name="optpart"; version="3.0-3"; sha256="18h659gbgzflq81lcchc058xjgljkmhpsjkh51ylygwrv1qjrz2i"; depends=[cluster labdsv MASS plotrix]; }; optrcdmaeAT = derive2 { name="optrcdmaeAT"; version="1.0.0"; sha256="16g4612mwyfsckn6l71fbrjnnjv4yvnac1cccbrn3k8jh07qgb1h"; depends=[igraph MASS Matrix]; }; optrefine = derive2 { name="optrefine"; version="1.1.0"; sha256="1ijahjraiaax0xyr1y4s3aq1b4xk8h7ablrvy2m2fr879q3xfi9i"; depends=[ggplot2 MASS Rglpk sampling]; }; optweight = derive2 { name="optweight"; version="0.2.5"; sha256="1mfk9sp47flqq7i762wip5191j8m0q9kbyxs4a7f0pd76qwf67q2"; depends=[ggplot2 Matrix osqp]; }; opusminer = derive2 { name="opusminer"; version="0.1-1"; sha256="1vw6pbk1iiaxmfws95wmwf56p3afk10s5c3x9f0lliamckpyzkck"; depends=[arules Matrix Rcpp]; }; - orbweaver = derive2 { name="orbweaver"; version="0.0.3"; sha256="0lmxcjh621nsq5qrhg76h034dnzsybxs7r3sbqr91lifl2mpdnsd"; depends=[]; }; + orbweaver = derive2 { name="orbweaver"; version="0.10.2"; sha256="1n8gay2nsxh0pc1jc6hgs2n5knk5ajaaqisq2l5dsnkl172r62rf"; depends=[glue rlang]; }; orca = derive2 { name="orca"; version="1.1-2"; sha256="0nzm0i0ms2l4n10pgs1jg7mb9pd1k3pg7nvyd0w3ivq490g2py79"; depends=[]; }; orclus = derive2 { name="orclus"; version="0.2-6"; sha256="0d78mn2vl2yxlvdswyxkxp9zg59b8cvfksz9m56kddn79aps1ikl"; depends=[]; }; orcutt = derive2 { name="orcutt"; version="2.3"; sha256="0pj7pqzbcg4gp35nsz3avyawmx69dgj0l2w0x8ypw5qwl4zhmnyk"; depends=[lmtest]; }; @@ -14869,18 +15113,18 @@ in with self; { ordinalRR = derive2 { name="ordinalRR"; version="1.1"; sha256="1sfkq8gryyls22208ympw5scgb4jkd27pyc1qklw4x7cz9wfnfbp"; depends=[rjags]; }; ordinalbayes = derive2 { name="ordinalbayes"; version="0.1.1"; sha256="13f9rv6gndjr18rfk60rmginzam1xjsssjn45l6hhl6y3gglsyzh"; depends=[coda dclone DESeq2 devtools runjags SummarizedExperiment]; }; ordinalgmifs = derive2 { name="ordinalgmifs"; version="1.0.8"; sha256="0c97c3zss34x9n8szr95z51qx8ix55mlrbqvg8dz128xpd3684rj"; depends=[survival]; }; - ordinalpattern = derive2 { name="ordinalpattern"; version="0.2.3"; sha256="1xxii1lxbkip778wj92kicj4xlpriqa47b258bvmng2s4djkmg0y"; depends=[gtools mvtnorm]; }; + ordinalpattern = derive2 { name="ordinalpattern"; version="0.2.4"; sha256="0d2vb73318agam3bmcva2mirwlskhfl66jzla36yihkb2r64cxgn"; depends=[gtools mvtnorm]; }; ordr = derive2 { name="ordr"; version="0.1.1"; sha256="07nsl6mdm4dmyl8vsqzcpd2mihcxsm68gjx3v1dfqgjqmz477nvf"; depends=[dplyr generics ggplot2 ggrepel labeling magrittr purrr rlang scales stringr tibble tidyr tidyselect]; }; ore = derive2 { name="ore"; version="1.7.4.1"; sha256="01ayvjyjbarmi7l2jwp7bp4m0k42zy8bvf9rbwynfwmm8mv6vx0j"; depends=[]; }; oreo = derive2 { name="oreo"; version="1.0"; sha256="1qzv6fjana5fx45msqasqfniiancsch6j8r1llh1xyg2wjhqdj23"; depends=[fftwtools ggplot2 gridExtra openxlsx pracma scales spectral]; }; orf = derive2 { name="orf"; version="0.1.4"; sha256="1njcnya5f2wx50l7gyf53js16xj1y6pwgbghxq4nm4grf2ck3mz1"; depends=[ggplot2 ranger Rcpp xtable]; }; - org = derive2 { name="org"; version="2022.11.23"; sha256="0ppiwdzy7x0fnqq5j23dim4g64cn3bq72v2vd91c2i3sg4n5ahlk"; depends=[]; }; + org = derive2 { name="org"; version="2024.6.5"; sha256="1kpaij3qz6amccf01kplmx6ql90qkkqmswq364jj5x2jwx7k5w26"; depends=[]; }; orgR = derive2 { name="orgR"; version="0.9.0"; sha256="1q4qbwnbhmja8rqiph7g7m4wxhzhk9mh91x1jgbnky8bs4ljdgrx"; depends=[data_table ggplot2 ggthemes lubridate stringr]; }; organizr = derive2 { name="organizr"; version="0.1.0"; sha256="1i6j7c7d588gnjmh3ddknrs95mhw6ikq53c6wd3zy82lmjvh96bv"; depends=[fs here readr rlang rstudioapi stringr]; }; orgutils = derive2 { name="orgutils"; version="0.5-0"; sha256="1gvj82m67xmi0kwd883zmqgxnc621q30bgbnnszm5fnb3y2ni7d6"; depends=[textutils]; }; orientlib = derive2 { name="orientlib"; version="0.10.5"; sha256="05xwx040l1ln06rkmsg8l4394b3inaf663mw4fng54wwacgv9jfj"; depends=[]; }; origami = derive2 { name="origami"; version="1.0.7"; sha256="0b66alm1mr6vsgj5cgliqxw8vpm1x504qs42crlf0n6339a38h5l"; depends=[abind assertthat data_table future future_apply listenv]; }; - origin = derive2 { name="origin"; version="1.1.1"; sha256="0m10x4d8qh67davyznx759blrb548jk8d7my2zc285yax0d6wp5z"; depends=[cli rstudioapi]; }; + origin = derive2 { name="origin"; version="1.1.2"; sha256="0gnq66zsnmnwsn0xaxavw4ipkcb91371g5rh7i9pk863q7fvzkc0"; depends=[cli rstudioapi]; }; orloca = derive2 { name="orloca"; version="5.6"; sha256="0zfi64whis248fi5fggjqym7jhyh7ix7l371kchkdxcib3xylnps"; depends=[knitr png rmarkdown ucminf]; }; orloca_es = derive2 { name="orloca.es"; version="4.9"; sha256="00zb08dqcsh1ljl4f2djm1pwbrfbaddgapn3v8nascmwxlhb2hkw"; depends=[orloca]; }; ormBigData = derive2 { name="ormBigData"; version="0.0.1"; sha256="1rq202k4assmij21bjjk1ba7121p5p3rp21k548cc6lk81xj1rcc"; depends=[benchmarkme doParallel foreach Hmisc iterators rms SparseM]; }; @@ -14903,9 +15147,9 @@ in with self; { oskeyring = derive2 { name="oskeyring"; version="0.1.6"; sha256="1fsgz4jln3nk53bxpmjpc7dcapc9j1wdqlrab169ymvrlzypgvqc"; depends=[]; }; osmclass = derive2 { name="osmclass"; version="0.1.3"; sha256="16vpb1fq93s386anvyl6i8ynk5mijs0c40sh86lcpmp9wmdb6msp"; depends=[collapse data_table stringi]; }; osmdata = derive2 { name="osmdata"; version="0.2.5"; sha256="0073dnnznq479ffnizrv8wqmfiv3gmdmmlkmkh1hxgr7p32v1i4z"; depends=[curl httr2 lubridate magrittr Rcpp reproj rvest tibble xml2]; }; - osmextract = derive2 { name="osmextract"; version="0.5.0"; sha256="0fapfydxgm9wliqqapjdrpcj7w4f1s9k8ff8nw6hki8hh5hyrk4x"; depends=[httr jsonlite sf]; }; - osqp = derive2 { name="osqp"; version="0.6.3.2"; sha256="0i1jh3fr8d45b7inq9s6iyqszhh18hps8jpzkm0hzgj2k8r3nm0q"; depends=[Matrix R6 Rcpp]; }; - osrm = derive2 { name="osrm"; version="4.1.1"; sha256="05zvsmgrfg8143cma3xr2c758a7lbabsb53sxzw5xkc7z19amfyb"; depends=[curl googlePolylines mapiso RcppSimdJson sf]; }; + osmextract = derive2 { name="osmextract"; version="0.5.1"; sha256="03q3ra119j8rxkqasyxg0m4dlcpb378milfa1mwihsmmq4qd6ak5"; depends=[httr jsonlite sf]; }; + osqp = derive2 { name="osqp"; version="0.6.3.3"; sha256="1fzmw813iab07vnc714zyaszbnsagbmba7j69la36hvnqx78wggz"; depends=[Matrix R6 Rcpp]; }; + osrm = derive2 { name="osrm"; version="4.2.0"; sha256="1256pksd8mxzxi1vnl6ghhyl8f7g2li4wabs0kllw9i54yxvc83b"; depends=[curl googlePolylines mapiso RcppSimdJson sf]; }; osrmr = derive2 { name="osrmr"; version="0.1.36"; sha256="1vnf6g1d9fjckz9ay910nb9gr1km2adwk3b0k460mxvpr36izkh7"; depends=[assertthat bitops R_utils rjson stringr]; }; otargen = derive2 { name="otargen"; version="1.1.1"; sha256="0hdnxwrlqchmbbg3fvcbfdr6m3igdcmd1i0plmhh2vy5xg3fn1r9"; depends=[cli dplyr ggiraphExtra ggplot2 ggrepel ghql janitor jsonlite magrittr rlang stringr tibble tidyr]; }; otinference = derive2 { name="otinference"; version="0.1.0"; sha256="1l75jjnkyk8yzaw9zyk45jq9ys304i6pzm2xd5apxrb1jk75a3li"; depends=[MASS Rglpk sm transport]; }; @@ -14923,9 +15167,9 @@ in with self; { outbreaker2 = derive2 { name="outbreaker2"; version="1.1.3"; sha256="06wlmf51ciy7zy5nchfn2myvkwrvq44cnzzjl75vz32ixn8iy56v"; depends=[ape ggplot2 magrittr Rcpp visNetwork]; }; outbreaks = derive2 { name="outbreaks"; version="1.9.0"; sha256="0x6r4rzcvd1rp8j4brq9c0zl2xsl5jfi18dny20an7aqk310p11v"; depends=[]; }; outcomerate = derive2 { name="outcomerate"; version="1.0.1"; sha256="07mwml7r98qjgvrp938sqf7klyspz110583j0zwb72j69n4whmrj"; depends=[Rdpack]; }; - outerbase = derive2 { name="outerbase"; version="0.1.0"; sha256="18c73vp0fjcgg4vhf9bfxm21j8s85cmicqi5j76q0wm800qaqvm9"; depends=[Rcpp RcppArmadillo]; }; outlierensembles = derive2 { name="outlierensembles"; version="0.1.0"; sha256="0m2iaf3rbpwvyrjz6qglbrinmz676hnbqqm6vc38zb3k3cjcllaq"; depends=[airt apcluster EstCRM psych]; }; outliers = derive2 { name="outliers"; version="0.15"; sha256="1yrmwvjjb0a6sbx940k9svf23cykcxz8rrwcgyic7lpgzbrdfcfc"; depends=[]; }; + outliers_ts_oga = derive2 { name="outliers.ts.oga"; version="0.0.1"; sha256="1v10v4nw7xkrranv4pa4xqw3cayb1lq2p3qda76w6vxxwfch32pi"; depends=[caret forecast gsarima parallelly robust SLBDD]; }; outliertree = derive2 { name="outliertree"; version="1.9.0"; sha256="1sk4bdkqd4i47zh0hlaviyif936v608qrgirpi6pdry3r24jgwbl"; depends=[Rcereal Rcpp]; }; outreg = derive2 { name="outreg"; version="0.2.2"; sha256="04f1x7mxq4swbd7bfwjjgx4838jm6qj4piaighmhcscwrdkxa1cp"; depends=[magrittr reshape2 sandwich stringr tidyr]; }; overdisp = derive2 { name="overdisp"; version="0.1.2"; sha256="155zkxpv0jqy21winp3r17vnrd6xh2a92glha4d9i2vi541d9kix"; depends=[]; }; @@ -14957,7 +15201,7 @@ in with self; { pROC = derive2 { name="pROC"; version="1.18.5"; sha256="129cnh3kh9sr42nc7n9f14kr9svi3501834x40njynnzlr0wi4sm"; depends=[plyr Rcpp]; }; pRSR = derive2 { name="pRSR"; version="3.1.1"; sha256="1irx95b7cwvx3gpn9brjjn4k947m8frz542r18nilc9f1159mb3s"; depends=[]; }; pRecipe = derive2 { name="pRecipe"; version="3.0.1-3"; sha256="0mwv2xrxp4iws19dwph713xqnkgq3fnwfq1vmw68934qacyjmk79"; depends=[data_table doParallel foreach ggplot2 ggpubr lubridate magrittr ncdf4 openair raster scales sf sp]; }; - pRepDesigns = derive2 { name="pRepDesigns"; version="1.1.0"; sha256="1bsdgd6zaywr5bh96khjinp5qrv72ibv9y60v63rqzpkdixdzp5z"; depends=[]; }; + pRepDesigns = derive2 { name="pRepDesigns"; version="1.2.0"; sha256="1n8yzn4k3gsldrxr7fs7qmys854lfl54cwssd47w1k7kr259gvdg"; depends=[]; }; pTITAN2 = derive2 { name="pTITAN2"; version="1.0.2"; sha256="1mwx7k8ql4l572xvwb5gns9n4kqk779wwm4sg7nbgzz8xvcdh665"; depends=[data_table]; }; pa = derive2 { name="pa"; version="1.2-4"; sha256="0rjq0b68qh5ayn5nd174bw6h7d707fy4kli1zi74vj4yc51z0las"; depends=[ggplot2]; }; pack = derive2 { name="pack"; version="0.1-1"; sha256="0x4p8clwp49s2y67y7in530xwhjngnqwagf9xnyb1jp0z3myd3r7"; depends=[]; }; @@ -14965,7 +15209,7 @@ in with self; { packHV = derive2 { name="packHV"; version="2.2"; sha256="0bj7zhlz2283y1hfdqdn7xil4wscwri1f5hszarwjwczx4n5sv81"; depends=[survival WriteXLS]; }; packMBPLSDA = derive2 { name="packMBPLSDA"; version="0.9.0"; sha256="1d9plb88d4hic6881ibij888ic3p65d0ijlsyxcghi93ag3wsfj3"; depends=[ade4 doParallel FactoMineR foreach MASS pROC]; }; packageDiff = derive2 { name="packageDiff"; version="0.1"; sha256="0qxgx2ac0x7p9j9clj7hgjahf7xwzcjkcw0d2n6w0r9c4g0mw9w2"; depends=[diffr htmlwidgets]; }; - packageRank = derive2 { name="packageRank"; version="0.8.3"; sha256="04hr4ygpb4wxairlsr4z4knqs5797jspj2mpisd2ci233b6k4y0s"; depends=[cranlogs curl data_table ggplot2 ISOcodes memoise pkgsearch R_utils RCurl rversions sugrrants]; }; + packageRank = derive2 { name="packageRank"; version="0.9.1"; sha256="1d8savfry05xy3lxd5yhvmpky34563y433yxqsa2v6p252s6d6p7"; depends=[cranlogs curl data_table ggplot2 ISOcodes memoise pkgsearch R_utils RCurl rlang rversions sugrrants]; }; packagefinder = derive2 { name="packagefinder"; version="0.3.5"; sha256="1fxv6q6pla3yfr32z6j5g4f0c0f1f9gsyn4w8bp23692lfpip721"; depends=[clipr crayon formattable htmlTable httr jsonlite lubridate pander reactable shiny shinybusy shinyjs stringr textutils tidyr]; }; packagepal = derive2 { name="packagepal"; version="0.1.0"; sha256="0l49qfxdf54m07dpbj3gb3safh4nbc5hz1vgh4dyqxnkrvmh49xl"; depends=[available cli usethis]; }; packager = derive2 { name="packager"; version="1.15.2"; sha256="0kvlc0cn3v1wpffh4hn29q8jgfxxg4pcxnfnnhykbx13wilrvrph"; depends=[callr checkmate codetools crayon cyclocomp desc fakemake fritools fs gert httr pkgbuild pkgload rcmdcheck remotes rhub rprojroot tinytest whisker whoami]; }; @@ -14984,7 +15228,6 @@ in with self; { pagenum = derive2 { name="pagenum"; version="1.2"; sha256="0nid26wmrm76ifxqpqqry232q4alf80i7df1rg237qil8asx06k1"; depends=[]; }; pageviews = derive2 { name="pageviews"; version="0.6.0"; sha256="187gy6czxkicxghhklma87pfa23xcm07c4n9jfsr5yl9hwwfcna6"; depends=[curl httr jsonlite]; }; pagoda2 = derive2 { name="pagoda2"; version="1.0.12"; sha256="1kck12ri52nwsrxhjs8ghjji3rv1dxxjy8bxn1kk1hbg30265fsw"; depends=[dendsort drat fastcluster igraph irlba magrittr MASS Matrix mgcv N2R plyr R_utils R6 Rcpp RcppArmadillo RcppEigen RcppProgress rjson rlang RMTstat Rook Rtsne sccore urltools]; }; - pagoo = derive2 { name="pagoo"; version="0.3.17"; sha256="0scf40vyw7lh5jh4p28894fa05nfl8n71g55w9bs9gbkszmn792k"; depends=[BiocGenerics Biostrings dendextend DT GenomicRanges ggfortify ggplot2 heatmaply magrittr plotly R6 reshape2 S4Vectors shiny shinydashboard shinyWidgets vegan]; }; painbow = derive2 { name="painbow"; version="1.0.1"; sha256="10c8spknh7sqa4vl0q4bjdwd03nl4qk28hj2qa9sbyb1ryc7p4j9"; depends=[ggplot2]; }; painter = derive2 { name="painter"; version="0.1.0"; sha256="0qr6p13h50rlavcsamxmijfr4dfrbv1k088m28qf8a4gam3ap85b"; depends=[]; }; paintingr = derive2 { name="paintingr"; version="0.1.0"; sha256="0km21rv6f137nngx4nzamplzgzhfgijlh1skfvvkp0cbjxv17cpi"; depends=[]; }; @@ -14994,11 +15237,11 @@ in with self; { pairwiseCI = derive2 { name="pairwiseCI"; version="0.1-27"; sha256="0yp9nibdrsddjqq6vdlfbpvmfgm209h99b6qqqd6wgfzng327822"; depends=[boot coin MASS MCPAN mcprofile]; }; pak = derive2 { name="pak"; version="0.7.2"; sha256="0bgl3np3x2a4si99mx618jd8c4skq8bfdnxjwq7m59bapqc1s7c8"; depends=[]; }; palaeoSig = derive2 { name="palaeoSig"; version="2.1-3"; sha256="121akb42lqzp2vvfj6kjlaxsivxd71r7vnwyg6pcymkin94r8c3k"; depends=[assertr dplyr forcats ggplot2 ggrepel magrittr MASS mgcv purrr rioja rlang TeachingDemos tibble tidyr vegan]; }; - palaeoverse = derive2 { name="palaeoverse"; version="1.2.1"; sha256="0jvc6gamlzvam3r2iwgjz02hpj47ya7vacvq2mpqbgc6sbnjmi7k"; depends=[ape curl geosphere h3jsr httr pbapply sf stringdist]; }; + palaeoverse = derive2 { name="palaeoverse"; version="1.3.0"; sha256="1qfi5cv2xg89azax1v4hvajv1g6m59shp5q9db44rn65idxld7x5"; depends=[ape curl geosphere h3jsr httr pbapply sf stringdist]; }; palasso = derive2 { name="palasso"; version="0.0.9"; sha256="1qx6xa1csa4dz4vjr0q83pr22yxy01dzzqrjp5mxqqm6265wxqdh"; depends=[glmnet Matrix survival]; }; - pald = derive2 { name="pald"; version="0.0.3"; sha256="1d99fr96jy9a65fpn7pdbbwaj3n1dfqqd2s9cs3pr43h14h0ra9g"; depends=[glue igraph]; }; - paleoDiv = derive2 { name="paleoDiv"; version="0.2.2"; sha256="1ypl7qdfddijh13ydlk335d4q2i06ib5y4997gn0hhpq0n8f8akg"; depends=[ape stringr]; }; - paleoTS = derive2 { name="paleoTS"; version="0.5.3"; sha256="1hpgyjnviw9gzy21rsa4vqkiyfpim5y70yrbjyq5z3ifanszggi5"; depends=[doParallel foreach mnormt]; }; + pald = derive2 { name="pald"; version="0.0.4"; sha256="1b24z6lls2z2c3mwmnbp3qjr63hc1css8d2zy61fzrc78v6v42am"; depends=[glue igraph]; }; + paleoDiv = derive2 { name="paleoDiv"; version="0.3.0"; sha256="1gj26y0ipc6rvf39293blxchnvm89pbmcwhqbnjz81cgp2zrw514"; depends=[ape stringr]; }; + paleoTS = derive2 { name="paleoTS"; version="0.6.1"; sha256="0ni3rxhmd30gqm2hkq23qr106pkxr2rnl318lzgrh7hxk9nwpgnl"; depends=[doParallel foreach mnormt]; }; paleobioDB = derive2 { name="paleobioDB"; version="1.0.0"; sha256="146p6pn3y6ca9vrdbkg3gyqfpb9drvbkkzq50y3qnzwiz15hmxq5"; depends=[curl gtools maps rjson terra]; }; paleobuddy = derive2 { name="paleobuddy"; version="1.0.0"; sha256="0kaq6vvzw5h0fpvggmvf6v2zg6a06kxcyajv1krzx0p9482nwyzi"; depends=[]; }; paleomorph = derive2 { name="paleomorph"; version="0.1.4"; sha256="05l55miahkmj8ikq8qz20y6kgxvxmdf04kji898i7fp8qyj4vfpa"; depends=[]; }; @@ -15018,14 +15261,14 @@ in with self; { pamm = derive2 { name="pamm"; version="1.122"; sha256="0jd0v3vlq1hrhlyhw008h1jlx9f2nd72ngpyn6km0ay04pnbhkvs"; depends=[lattice lme4 lmerTest mvtnorm]; }; pammtools = derive2 { name="pammtools"; version="0.5.93"; sha256="0xihvszndsnzzh3kzn67yqqdxms5pba609lvlg68k3gfxbxk104l"; depends=[checkmate dplyr Formula ggplot2 lazyeval magrittr mgcv mvtnorm pec purrr rlang survival tibble tidyr vctrs]; }; pampe = derive2 { name="pampe"; version="1.1.2"; sha256="092n04nrp886kd163v32f5vhp9r7gnayxzqb6pj57ilm5w1yrcsk"; depends=[leaps]; }; - pamr = derive2 { name="pamr"; version="1.56.1"; sha256="0ycpgkk23y3zzkb42n2skcyl35ps1n7jmyzfj7pbxr3f6gr2grfh"; depends=[cluster survival]; }; + pamr = derive2 { name="pamr"; version="1.56.2"; sha256="0n7wpgzdadngj44ddsg3171wap4qhiaap75ndr6g768r3mv6q119"; depends=[cluster survival]; }; pan = derive2 { name="pan"; version="1.9"; sha256="0liwcym035174h6c4b9ddmqxa3vkpkk3alyr9psk8yhv7i61hzp3"; depends=[]; }; pander = derive2 { name="pander"; version="0.6.5"; sha256="144zkq5w7v6fpzk3x40i0baybbp0y6x2ckh4b9qljryas9mhgp9a"; depends=[digest Rcpp]; }; pandoc = derive2 { name="pandoc"; version="0.2.0"; sha256="00bmvxvp4rskbjphp93lpwkp58bkqzlglir7my3icdgrbcyxagj3"; depends=[fs rappdirs rlang]; }; pandocfilters = derive2 { name="pandocfilters"; version="0.1-6"; sha256="0y2n49n4ln3ac45176nkdd7407bk5vdc0fpl872nasgsvia0zknk"; depends=[jsonlite]; }; panelPomp = derive2 { name="panelPomp"; version="1.1"; sha256="054nma2h355xd8bazbjrwgxa825qrwfjjwny5m9hry5pyb2vszwm"; depends=[pomp]; }; panelSUR = derive2 { name="panelSUR"; version="0.1.0"; sha256="025p6dqd7fxa0nh07mwrkbvi5cb6jsfx28kskqvzf8zvar6rbr41"; depends=[fastmatrix formula_tools MASS matlib plm]; }; - panelView = derive2 { name="panelView"; version="1.1.17"; sha256="05zfkjmkypjw72z3ph11q1wzac55b6knv4ngvb47jjpi3n5i91ga"; depends=[dplyr ggplot2 gridExtra]; }; + panelView = derive2 { name="panelView"; version="1.1.18"; sha256="1kp8cvc0qklbdxmjh5n4sxzv3ncvrykcyvdsnvil40pmikmd0599"; depends=[dplyr ggplot2 gridExtra]; }; panelWranglR = derive2 { name="panelWranglR"; version="1.2.13"; sha256="0zj0m08518zi6xsa7qik61ys1qqa2lqiar4l7acclkw58w5zrmbc"; depends=[caret data_table Hmisc]; }; panelaggregation = derive2 { name="panelaggregation"; version="0.1.1"; sha256="0x8ldqb9216pclfvs4ymdpian43v2ydkyflpf0k6lcn35r04xfr6"; depends=[data_table]; }; panelhetero = derive2 { name="panelhetero"; version="1.0.1"; sha256="12csjgcjxwl7fxlqib0vgywf32frd7jri3dj9lyq5fmz9riqkdix"; depends=[boot ggplot2 KernSmooth Rearrangement]; }; @@ -15033,33 +15276,36 @@ in with self; { panelsummary = derive2 { name="panelsummary"; version="0.1.2.1"; sha256="00rscxkblqkhyx2kdnl78hy82y9bjwdzhiia7bdx9qbjf0g2qjkl"; depends=[dplyr fixest kableExtra modelsummary rlang stringr tidyselect]; }; panelvar = derive2 { name="panelvar"; version="0.5.5"; sha256="15bks8aqy29rslgbjp4w8xw7w2mcpgcc77bya7a9jcs5715j9xdb"; depends=[ggplot2 knitr MASS Matrix matrixcalc progress reshape2 texreg]; }; pangaear = derive2 { name="pangaear"; version="1.1.0"; sha256="1x1dbf7jahzc5s4gs0hn6xpw35xxbgp61aym50k384pavsdm9xgw"; depends=[crul hoardr jsonlite oai png tibble xml2]; }; + panstarrs = derive2 { name="panstarrs"; version="0.2.2"; sha256="0vynq6mycsirwb0kkl85xxijap0jk12k3m7lw7hljf6vwp2p2zc0"; depends=[bit64 checkmate curl data_table httr jsonlite]; }; papaja = derive2 { name="papaja"; version="0.1.2"; sha256="08ydk9fws5x37q120cdjdx1dsib0y2g9bp826vxzxcaymlwx3dl7"; depends=[bookdown broom glue knitr rmarkdown rmdfiltr tinylabels yaml zip]; }; papci = derive2 { name="papci"; version="0.1.0"; sha256="0ma1pfwgmj6qcg23yzhbnqip4qnxhsmfnvrgrr3ln65q5plmvh58"; depends=[binom dplyr DT Hmisc PropCIs ratesci readxl shiny shinythemes tidyverse]; }; papeR = derive2 { name="papeR"; version="1.0-5"; sha256="095qfgv6h3sl5p69gm1v0qh9axap8gq2a9a3v95688fia2ppym4x"; depends=[car gmodels xtable]; }; paperplanes = derive2 { name="paperplanes"; version="0.0.1.9"; sha256="1d9grc95xqxn91lvk8v7w3z90bhl8savkhihwshyjp8ij2xpzfkl"; depends=[]; }; parSim = derive2 { name="parSim"; version="0.1.5"; sha256="0gcycp0gcgz2a1w7nzrlwq41wvyg36931c9q4zjyq876nd43ah12"; depends=[data_table dplyr pbapply snow]; }; + parTimeROC = derive2 { name="parTimeROC"; version="0.1.0"; sha256="0rshkjckv0llzgp2yywrbz55ahbzcq140k78wwwsjlwymjfxim9f"; depends=[BH cubature DescTools flexsurv Matrix moments mvtnorm Rcpp RcppEigen RcppParallel rstan rstantools sn StanHeaders survival VineCopula]; }; parabar = derive2 { name="parabar"; version="1.1.1"; sha256="1hhhcxaap1ih4chf5l2c8mqkv9i4bsqml64ak3nfydsi4znymha4"; depends=[callr filelock progress R6]; }; parade = derive2 { name="parade"; version="0.1"; sha256="07x02j9jlldz4p0cyhw292041l3pziv56bhbzp4f0qpxhcbn5zn4"; depends=[]; }; - paradox = derive2 { name="paradox"; version="0.11.1"; sha256="0igza40ycirnf5chs7z2nnh0w6d48v4wv102zn2vnvh0kkvgv3hd"; depends=[backports checkmate data_table mlr3misc R6]; }; + paradox = derive2 { name="paradox"; version="1.0.0"; sha256="0lll3sjyn0hmxfzg71zk53f3fddibvq7762ax7gxjgiy6zgi9mny"; depends=[backports checkmate data_table mlr3misc R6]; }; parallelDist = derive2 { name="parallelDist"; version="0.2.6"; sha256="01ly4hxwa64a0ya5gla8rvv72s9mcknsfznivjkh937pbjwb7iih"; depends=[Rcpp RcppArmadillo RcppParallel]; }; parallelMCMCcombine = derive2 { name="parallelMCMCcombine"; version="2.0"; sha256="18xw0s9lga2w981cx4daywp6b6gxvgl9mh68r13c5mmhis3b8v14"; depends=[mvtnorm]; }; parallelMap = derive2 { name="parallelMap"; version="1.5.1"; sha256="1qg7zpz5sd9jp8wzjqahkhipwj1jn192llwg06q4gv9mlcsac261"; depends=[BBmisc checkmate]; }; parallelPlot = derive2 { name="parallelPlot"; version="0.3.1"; sha256="12rpzcz1nc8c9rnsdg7kx6gh98plhp2jv22h58gg5gyl0pcsh2hx"; depends=[htmlwidgets]; }; parallelly = derive2 { name="parallelly"; version="1.37.1"; sha256="189ngbh9i6mqmfn4z6446in7687ddlpdq6v5rj3hr8zqinqlwznz"; depends=[]; }; parallelpam = derive2 { name="parallelpam"; version="1.4"; sha256="0iv11jqr9040rnw7hkfdj4vq4s7lhzz6as7f0zcy6jm36b3hllh2"; depends=[memuse Rcpp]; }; - param2moment = derive2 { name="param2moment"; version="0.1.0"; sha256="1dv078231xyc4fa05zkh289wxhm5pjijsbkyvpm3zh9ybxdnmd4p"; depends=[]; }; + param2moment = derive2 { name="param2moment"; version="0.1.2"; sha256="1k5zgzi985hglk5xh0qan6f6bsayln6vq1jykrxyxlffvpbc4hg1"; depends=[]; }; paramGUI = derive2 { name="paramGUI"; version="2.2.0"; sha256="16z7fbrykyfysiqfrj00ks567wwrz2mpcwx75crbg45spdw0dck6"; depends=[fields shiny shinydashboard TIMP]; }; - parameters = derive2 { name="parameters"; version="0.21.6"; sha256="004ld3m9qdq3bwl8qmp3h700kzqlgbmgz739d7fpiqgrs0s2gv83"; depends=[bayestestR datawizard insight]; }; + parameters = derive2 { name="parameters"; version="0.21.7"; sha256="1br7mxfmb58f0kcinb1cyr7zvw1l37zhidsqf6280zyqqwdg46ir"; depends=[bayestestR datawizard insight]; }; paramhetero = derive2 { name="paramhetero"; version="1.0.0"; sha256="1zkwzmh3igkwfq87v3rmp3axfspl20qn4qmpyqql6ain564yyabw"; depends=[ggplot2 MASS]; }; paramlink = derive2 { name="paramlink"; version="1.1-5"; sha256="0a21cy8q3zv96zdq5q2hfkb2ga1fham00in7wfyyd9wpck9gp009"; depends=[assertthat kinship2 maxLik]; }; paramlink2 = derive2 { name="paramlink2"; version="1.0.4"; sha256="1dw6z49yd7g89hmnzpb5m0w8fz56iwwf7zr01kji0ss9p9vnr9pg"; depends=[pedprobr pedtools]; }; params = derive2 { name="params"; version="0.7.3"; sha256="0zii9nxgl2z46vyqn2l0kdjmib90534ybpizck74mp2wp1vh9ndj"; depends=[glue purrr RcppTOML readr whisker]; }; paramsim = derive2 { name="paramsim"; version="0.1.0"; sha256="1a227s1xglcc1skpsmwmmwr04mql73plc557sp8bl8444fhjz228"; depends=[doParallel foreach forecast future tibble]; }; paramtest = derive2 { name="paramtest"; version="0.1.0"; sha256="0yn1s1qkgby8x0qn7cy1zhxzc0wyi7bm30pkvijhn5h5afjpylsy"; depends=[boot]; }; - paran = derive2 { name="paran"; version="1.5.2"; sha256="0d9la83mxfpfgdfrqa40ck5fcp3j2b70d8c8nl9wmdsgvgqrl23s"; depends=[MASS]; }; + paran = derive2 { name="paran"; version="1.5.3"; sha256="0lfhizz1vdmlwwcnm3y1nm127rm02icdk56x2p0m7vrcqbxybyqp"; depends=[MASS]; }; parcats = derive2 { name="parcats"; version="0.0.5"; sha256="1imlifi6zdyv1wnvasw8n7cxwq06hj6rr1g2xc1d8j2ic3dbk4ig"; depends=[dplyr easyalluvial forcats htmlwidgets magrittr purrr stringr tibble tidyr]; }; - parcr = derive2 { name="parcr"; version="0.5.1"; sha256="10ww3m0nhs5lx4bf34iyb00w3pdik3z3lmp843lz87nqwnh5farc"; depends=[]; }; + parcr = derive2 { name="parcr"; version="0.5.2"; sha256="0288l0jl246jp44zzi0avgz8yip23b64hg8pgnnadl7271xx0nvx"; depends=[]; }; parfm = derive2 { name="parfm"; version="2.7.7"; sha256="12kcvdpmp99lqgr1775xqjkcn3s5agng1hwhjq2sa3bgrjgmhsh5"; depends=[msm optimx sn survival]; }; + pargasite = derive2 { name="pargasite"; version="2.1.0"; sha256="0jna1mjq4k8zfnszw3yarn6s0bhc70awins3nz4kmply01jy5jfi"; depends=[cli gstat leaflet leafsync raqs rlang sf shiny shinycssloaders stars]; }; parglm = derive2 { name="parglm"; version="0.1.7"; sha256="11knspjg0s7x8c5dqrkdkr33af39rhyggs0s0dxv726zfmg1ldy3"; depends=[Matrix Rcpp RcppArmadillo]; }; parma = derive2 { name="parma"; version="1.7"; sha256="0rv53d3ailqh5a0qarpw9967ghnvslr2kcn02yn8xbkpcvnb7lfk"; depends=[corpcor nloptr quadprog Rglpk slam truncnorm]; }; parmigene = derive2 { name="parmigene"; version="1.1.0"; sha256="067rqxqyzy1fsjj0s1g7af4527whwdhzjzc5b8a8n7683na59ns4"; depends=[]; }; @@ -15067,7 +15313,7 @@ in with self; { paropt = derive2 { name="paropt"; version="0.3.3"; sha256="0rmiamj3s0s9qcymx74lmk266mrja3mxkflf32dpahnric9rvpsl"; depends=[ast2ast dfdr Rcpp RcppArmadillo RcppThread rlang]; }; parqr = derive2 { name="parqr"; version="0.1.0"; sha256="11956dvv46sgpmbv429c24wxdhfqvc07jxc1i4yymyz1l8wgr3yb"; depends=[arrow magrittr purrr]; }; parquetize = derive2 { name="parquetize"; version="0.5.7"; sha256="0vmvjycyw4kihdx13wgi8qbynnaic96wgvw2hhdjz8fjrg1lb9sy"; depends=[arrow cli curl DBI dplyr fst glue haven jsonlite lifecycle readr rlang RSQLite tidyselect]; }; - parseRPDR = derive2 { name="parseRPDR"; version="1.1.0"; sha256="0jbph3sjhp0qa0gk9vixr2bswcmkjbwz142nplzlsym9x9j02626"; depends=[data_table doFuture doParallel foreach future parallelly progressr readr stringr]; }; + parseRPDR = derive2 { name="parseRPDR"; version="1.1.1"; sha256="1ih4mrk0vfr8rkm55zgx4rlv3791asvsahk9w4pavns3r0wiq6av"; depends=[data_table doFuture foreach future parallelly progressr readr stringr]; }; parsec = derive2 { name="parsec"; version="1.2.7"; sha256="0k6w4nd37yz9jlzwv0bkv90v72y5bjz7rhk8gjpbl6ym63brxps6"; depends=[igraph netrankr]; }; parsedate = derive2 { name="parsedate"; version="1.3.1"; sha256="1cfinqlbchmkhkgmdwiy3mnxb17lp02jfk2gpw56hq9vh6wimhqz"; depends=[]; }; parsel = derive2 { name="parsel"; version="0.3.0"; sha256="0d2sviaq94v5szd2qq1kdpirp3zyrx6r3kyins9xyfma9026770x"; depends=[lubridate purrr rlang RSelenium]; }; @@ -15078,7 +15324,7 @@ in with self; { partialised = derive2 { name="partialised"; version="0.1.1"; sha256="0rb9d5p21f1y0c8arwh1lf516vw30qinf15rkrv49qw97dvvb9db"; depends=[pillar purrr rlang vctrs]; }; particle_swarm_optimisation = derive2 { name="particle.swarm.optimisation"; version="1.0"; sha256="0y3pq129irxifiph40mf027gbc02c4pwkchs305pcbj3vr9pwsyw"; depends=[R6 rgl]; }; particles = derive2 { name="particles"; version="0.2.3"; sha256="0x76q9qcfaraiy0w8hrdk4ws16w1a8m363a3l4cphpi6xi329027"; depends=[cpp11 digest dplyr igraph mgcv rlang tidygraph]; }; - partition = derive2 { name="partition"; version="0.2.0"; sha256="0h58dzwmndvaz535hshv50c657gjpadv2g60mylj4rb064li51lk"; depends=[crayon dplyr forcats ggplot2 infotheo magrittr MASS pillar progress purrr Rcpp RcppArmadillo rlang stringr tibble tidyr]; }; + partition = derive2 { name="partition"; version="0.2.1"; sha256="0nbhkzx4rp8zm6n49sf2kdzqkyfjh9032qbkpp4f4mnk5434z1qk"; depends=[crayon dplyr forcats ggplot2 infotheo magrittr MASS pillar progress purrr Rcpp RcppArmadillo rlang stringr tibble tidyr]; }; partitionBEFsp = derive2 { name="partitionBEFsp"; version="1.0"; sha256="0rirqk9v5jbjs2jpjjkg7kvay9f093q2gwx5fx3bm9b0f5869w1b"; depends=[]; }; partitionComparison = derive2 { name="partitionComparison"; version="0.2.6"; sha256="1z4ckjgjsq94wbnazb3335rcy6hhqh8pf9j5d22z6qkgfgxcv7w6"; depends=[lpSolve Rdpack]; }; partitionMetric = derive2 { name="partitionMetric"; version="1.1"; sha256="1wry9d3s814yp79ayab7rzf8z5l2mwpgnrc5j7d2sac24vp4pd48"; depends=[]; }; @@ -15086,7 +15332,7 @@ in with self; { partools = derive2 { name="partools"; version="1.1.6"; sha256="0w7p88y4ab4v14k16k95cyb5f3yl2g6ban11775rmi2h9xqkfxk8"; depends=[data_table pdist regtools]; }; partsm = derive2 { name="partsm"; version="1.1-3"; sha256="17md3j41knscllckiqnvkqvf2v0fgsig101vgg6z5ic1yzvzfxgs"; depends=[]; }; parttime = derive2 { name="parttime"; version="0.1.2"; sha256="0n8yyi2c14b0rharb2afj9xkmjjfqalzyl164m5arzscwpxl9y2i"; depends=[crayon lubridate pillar vctrs]; }; - party = derive2 { name="party"; version="1.3-14"; sha256="0rq88zd8bqqqavlnmijf2j53livpr4pkmxlxhf5acsl2jxf9fc5w"; depends=[coin modeltools mvtnorm sandwich strucchange survival zoo]; }; + party = derive2 { name="party"; version="1.3-15"; sha256="05r2mp7hfqxqnhk5wy73510x7yn1r15gww4mhxkvl9jm44p7rqn0"; depends=[coin modeltools mvtnorm sandwich strucchange survival zoo]; }; partykit = derive2 { name="partykit"; version="1.2-20"; sha256="1np0sa7fx7wvwxbpk5lpgbdpz0xwcvppq0sc52nifx1dxnirll33"; depends=[Formula inum libcoin mvtnorm rpart survival]; }; parzer = derive2 { name="parzer"; version="0.4.1"; sha256="0v97cfjkggkdhv8gc0ffgbijgwxzpz7n44z7gsmkvggjj3wsxvpr"; depends=[Rcpp withr]; }; pasadr = derive2 { name="pasadr"; version="1.0"; sha256="0gc44jbqn96bn7f6xjmszz5lgsby24sxziixvhbkh5lgs4zap8i2"; depends=[pracma scales]; }; @@ -15094,6 +15340,7 @@ in with self; { passport = derive2 { name="passport"; version="0.3.0"; sha256="176pkc7x76339bawdwywdcmiynzzlrwr91fgf5q0rq7asd9nc7d1"; depends=[]; }; passt = derive2 { name="passt"; version="0.1.3"; sha256="0yphnw38wwv303lkbfj2y3fwfjnd8l7gyi60c7xaj6qwy4y5ww8k"; depends=[dplyr magrittr rlang tidyr]; }; password = derive2 { name="password"; version="1.0-0"; sha256="1ijzqdw54l8wvpy6ys28njvhplzjxzzi5i9y41vjnrr88n13977v"; depends=[]; }; + pastaPlot = derive2 { name="pastaPlot"; version="0.1.0"; sha256="16a1rk903py7bm36wkywwspq927698k1kvv5h1h7ln6rcd2376r3"; depends=[ggeffects ggplot2 glmmTMB lme4]; }; pastclim = derive2 { name="pastclim"; version="2.0.0"; sha256="00zkf6flv4f5ljn0difpa8j3n221gvflsjnfdhfjbxnnw80qbyrp"; depends=[curl lubridate ncdf4 terra]; }; pasteAsComment = derive2 { name="pasteAsComment"; version="0.2.1"; sha256="165wsvgnrsbx9lh6bmffzyhdfhviap4vl556sbgr8f45lqcgsh69"; depends=[clipr rstudioapi]; }; pastecs = derive2 { name="pastecs"; version="1.4.2"; sha256="1y3nngdmslbs1rls0n2nbx8jpp9z3nvv11w1z6rff6v0ky05ddj3"; depends=[boot]; }; @@ -15103,42 +15350,42 @@ in with self; { patentr = derive2 { name="patentr"; version="0.1.4"; sha256="14jxqaq306mpppzz14f0qw1d0brrrkcs121h5fdiskvly3vjvs1j"; depends=[dplyr lubridate magrittr progress Rcpp rlang xml2]; }; patentsview = derive2 { name="patentsview"; version="0.3.0"; sha256="1ysqarmqqbw7zy1c3nfa08i6byima31pmcvv60qz9qjpyd2np0fn"; depends=[httr jsonlite]; }; path_chain = derive2 { name="path.chain"; version="0.2.0"; sha256="1p28mcar4krgvkgn02xrlwcpzchnppn2l2k2iwh511c3qrfpy653"; depends=[logger rlang stringi]; }; - pathfindR = derive2 { name="pathfindR"; version="2.3.1"; sha256="152n1kjmaplykcxrnjf9ms7abamy0aisinbwf61j1gwxg7j6ddq3"; depends=[AnnotationDbi DBI doParallel foreach fpc ggplot2 ggraph ggupset igraph KEGGgraph KEGGREST knitr magick msigdbr org_Hs_eg_db pathfindR_data R_utils rmarkdown]; }; - pathfindR_data = derive2 { name="pathfindR.data"; version="2.0.0"; sha256="17gq9na4d6ls0dkvy4v1gjg29v7jm7ms9k83c2p6q2q1273ahxpb"; depends=[]; }; - pathling = derive2 { name="pathling"; version="6.4.2"; sha256="1i60b3caa1fn36gb04wwmr043pmxr234xhfy5m07z891andx90jj"; depends=[rlang sparklyr]; }; + pathfindR = derive2 { name="pathfindR"; version="2.4.1"; sha256="0lwjnw6krqz2yi39as07zcpyh13c6b4d0qxxhhqbqcms6anms7q3"; depends=[AnnotationDbi DBI doParallel foreach fpc ggkegg ggplot2 ggraph ggupset httr igraph knitr msigdbr org_Hs_eg_db pathfindR_data R_utils rmarkdown]; }; + pathfindR_data = derive2 { name="pathfindR.data"; version="2.1.0"; sha256="1plc83y35nbvn554kf52d3wc4q44fdm3rh5qs6asfcqif17g6k82"; depends=[]; }; + pathling = derive2 { name="pathling"; version="7.0.0"; sha256="092pff81qg3pypygakihabi64kgw1fvdsn2pbkcvhnfa07yrirm1"; depends=[rlang sparklyr]; }; pathlit = derive2 { name="pathlit"; version="0.1.0"; sha256="0harvldkhq2c1wb9i4n72w1s3frhjzyn4cjpwk1n350zg12kh9gz"; depends=[httr jsonlite testthat timeSeries usethis]; }; pathmodelfit = derive2 { name="pathmodelfit"; version="1.0.5"; sha256="1nxcnmz9r99znqmwibvvix7h3acp22cs6wp1jmp21p862ncabll8"; depends=[lavaan]; }; paths = derive2 { name="paths"; version="0.1.1"; sha256="19fl54r2myb9ky8ffnx71xw23a8dlg15sj9v36xcpv79z61ryws9"; depends=[BART boot gbm ggplot2 metR pryr tidyr twang]; }; pathviewr = derive2 { name="pathviewr"; version="1.1.7"; sha256="0n3jv5zzwb7579ymv8s6vr7nzrc3gz5bi30yf6qvqixr8j0k4ggr"; depends=[cowplot data_table dplyr fANCOVA ggplot2 lubridate magrittr purrr R_matlab stringr tibble tidyr tidyselect]; }; pathwayTMB = derive2 { name="pathwayTMB"; version="0.1.3"; sha256="1zrs7l9vifrsixk20p0nxs6s8kadc3l3mj933s7ribaby2fb0r8m"; depends=[BiocGenerics caret clusterProfiler data_table glmnet maftools pROC purrr randomForest RColorBrewer survival survminer]; }; - patientProfilesVis = derive2 { name="patientProfilesVis"; version="2.0.7"; sha256="04vdiyia3xkirnpwd88i7j46gvwcxn6wdzc50660pkqkn1gwiyhn"; depends=[clinUtils cowplot ggplot2 gridExtra knitr plyr reshape2 scales stringr]; }; + patientProfilesVis = derive2 { name="patientProfilesVis"; version="2.0.8"; sha256="1ivc356cr6zsyggw6if43h135ynij9c36rg9p467945q8dcf4hcr"; depends=[clinUtils cowplot ggplot2 gridExtra knitr plyr reshape2 scales stringr]; }; patrick = derive2 { name="patrick"; version="0.2.0"; sha256="1ghjvm82hgal091hfjfyz3ndg32xsggip5pp4y0g7rmrzpfjmpjs"; depends=[dplyr purrr rlang testthat tibble]; }; patternator = derive2 { name="patternator"; version="0.1.0"; sha256="0s4vrhdfblllnhpz2awhhrkwm8d4170xg7fpsp7kvvqy8z8biwvi"; depends=[data_table]; }; patternize = derive2 { name="patternize"; version="0.0.5"; sha256="1d0x27fy41sdxhmyj4cy01xxxcbyp4hvxjcybbmgg1r4ivi1sp08"; depends=[abind ClusterR dplyr geomorph imager magrittr Morpho purrr raster RNiftyReg sf sp vegan]; }; patternplot = derive2 { name="patternplot"; version="1.0.0"; sha256="0n4y23g894amwi62lx10k15i28rsmiaw52bds8dzmvkykkp9mm8q"; depends=[dplyr ggplot2 gridExtra gtable jpeg png R6 Rcpp RcppParallel]; }; pavo = derive2 { name="pavo"; version="2.9.0"; sha256="1kl3qd1q6p4rmfbml0lfjj3wi40w3kkb9gahvin8k62m5aa4hmq6"; depends=[cluster farver future_apply geometry lightr magick plot3D progressr sf viridisLite]; }; pawacc = derive2 { name="pawacc"; version="1.2.3"; sha256="150bvmnv5myq856x19kg1ca9favcsh1cid70y8hv3wd9f25w9r8c"; depends=[SparseM]; }; - paws = derive2 { name="paws"; version="0.5.0"; sha256="1dwk1fnsrykvgz4l3hiapcqvvajwr3kmwxl3gza07nh573j8439h"; depends=[paws_analytics paws_application_integration paws_common paws_compute paws_cost_management paws_customer_engagement paws_database paws_developer_tools paws_end_user_computing paws_machine_learning paws_management paws_networking paws_security_identity paws_storage]; }; - paws_analytics = derive2 { name="paws.analytics"; version="0.5.0"; sha256="07nwa39mn749a9rqb683wf19kd8si7ksws87annbldmd57r072l8"; depends=[paws_common]; }; - paws_application_integration = derive2 { name="paws.application.integration"; version="0.5.0"; sha256="1sgzp0yr1jsmbyzyk26m762rhpxb89wrwqqvrrw3xr1ib0cg06ah"; depends=[paws_common]; }; - paws_common = derive2 { name="paws.common"; version="0.7.1"; sha256="1mjbyykav3f5yv59hnaihqsqhinvrlhphp93ks9xp756w6abciqf"; depends=[base64enc curl digest httr jsonlite Rcpp xml2]; }; - paws_compute = derive2 { name="paws.compute"; version="0.5.0"; sha256="1vsxwzqgk0004nmfy79pd0zc208fczay95p7h16mzqgds9586ma1"; depends=[paws_common]; }; - paws_cost_management = derive2 { name="paws.cost.management"; version="0.5.0"; sha256="1fvxird0kmwhj930j7hm95h34c0vsf8p0lh6qrnz9d9i689fiw92"; depends=[paws_common]; }; - paws_customer_engagement = derive2 { name="paws.customer.engagement"; version="0.5.0"; sha256="1380waqavwga17fvdzfpag4snzynkykh3pnia5bi73476y7myj5h"; depends=[paws_common]; }; - paws_database = derive2 { name="paws.database"; version="0.5.0"; sha256="0nlkbnyxd3znmvqxqb3w43sznacmikq32d9fihyc1dx7ghvmf61z"; depends=[paws_common]; }; - paws_developer_tools = derive2 { name="paws.developer.tools"; version="0.5.0"; sha256="177q7x8l9asyidpc7j20xwpyk0bd9x9m20cy4qzlnnmr14anyvjm"; depends=[paws_common]; }; - paws_end_user_computing = derive2 { name="paws.end.user.computing"; version="0.5.0"; sha256="0qz5kps9819yfqjdqjmv7wx70ll7xayfxmd5dc867k14i41f91cm"; depends=[paws_common]; }; - paws_machine_learning = derive2 { name="paws.machine.learning"; version="0.5.0"; sha256="0zcw758xsw2360571dj215gyd1amaxx07i58h1r6r5zys940lxis"; depends=[paws_common]; }; - paws_management = derive2 { name="paws.management"; version="0.5.0"; sha256="0k40lrgxx91bijj3648zsgj55x120mhmx8dyx3hm2yvh2k96ks7h"; depends=[paws_common]; }; - paws_networking = derive2 { name="paws.networking"; version="0.5.0"; sha256="0qs6bp0vlbazxir9jmdcnazh90yrvhrw6k9046id73hw1j7h5zaf"; depends=[paws_common]; }; - paws_security_identity = derive2 { name="paws.security.identity"; version="0.5.0"; sha256="01gh761ykc4h81whn649bm28b01njqm1kjqkn9l4n7hhnalddy06"; depends=[paws_common]; }; - paws_storage = derive2 { name="paws.storage"; version="0.5.0"; sha256="0v2g1shv9m4h2fz2lvjad479g3nmxc92wlyrxj4s7fifzzs2pd97"; depends=[paws_common]; }; + paws = derive2 { name="paws"; version="0.6.0"; sha256="1w8jzkcr86s67rclx994zkfwqqy02mlj2gk52a198dxg737w5nw0"; depends=[paws_analytics paws_application_integration paws_common paws_compute paws_cost_management paws_customer_engagement paws_database paws_developer_tools paws_end_user_computing paws_machine_learning paws_management paws_networking paws_security_identity paws_storage]; }; + paws_analytics = derive2 { name="paws.analytics"; version="0.6.0"; sha256="0w65f4bmcybp30zas20b90f1cmw1znhpjhcsf8xnq7x4s2lnpy3d"; depends=[paws_common]; }; + paws_application_integration = derive2 { name="paws.application.integration"; version="0.6.0"; sha256="0wmkxnrjmaf88bw1xypj7n41klxxhf538krsk0xrnwjb14v7lqla"; depends=[paws_common]; }; + paws_common = derive2 { name="paws.common"; version="0.7.3"; sha256="1h7xsddwjhjx5n3fns16nhk249h6mypk80d3jp7lwpianhdll90m"; depends=[base64enc curl digest httr jsonlite Rcpp xml2]; }; + paws_compute = derive2 { name="paws.compute"; version="0.6.1"; sha256="0s1d7gj7lb6fra4l6h3c74v3hsp701qbiqirnk0q0qm7ild5399r"; depends=[paws_common]; }; + paws_cost_management = derive2 { name="paws.cost.management"; version="0.6.1"; sha256="03mpmwg3lnky9ylpc4707a10y7b1hv228c0jc0yik0zfvrka0h64"; depends=[paws_common]; }; + paws_customer_engagement = derive2 { name="paws.customer.engagement"; version="0.6.0"; sha256="1akwx39xmkms9zpsb7i5wx2hzvhhkmi0xlxag13cf9gjpg822361"; depends=[paws_common]; }; + paws_database = derive2 { name="paws.database"; version="0.6.0"; sha256="0jm3cwl2scfc4jgxzlwnax195xlii2b3p9kjmid48p8zx6h68hb9"; depends=[paws_common]; }; + paws_developer_tools = derive2 { name="paws.developer.tools"; version="0.6.0"; sha256="1cj9k005267wpd9pblvhk0sdy2ll2n0wcq4ch5wjwkz9kgl02jjr"; depends=[paws_common]; }; + paws_end_user_computing = derive2 { name="paws.end.user.computing"; version="0.6.0"; sha256="17550n93d0lndhfk9r8zdh2yif4hw3m4wn7wzgj53akgqy1jg10y"; depends=[paws_common]; }; + paws_machine_learning = derive2 { name="paws.machine.learning"; version="0.6.0"; sha256="1l2gy9bzibbjwqxb5x72dpfaylxa999c3zyb3y3359ckqkxsqgpy"; depends=[paws_common]; }; + paws_management = derive2 { name="paws.management"; version="0.6.1"; sha256="0yxh3lr5b9cgsq9gmbjwfikiv38wa4d82mrq0fdqidhcsqfbz62g"; depends=[paws_common]; }; + paws_networking = derive2 { name="paws.networking"; version="0.6.0"; sha256="1lfkll2gb83vw9zfb7bnmlg4alncqhp48s1w046fkh9qlg8hc7j6"; depends=[paws_common]; }; + paws_security_identity = derive2 { name="paws.security.identity"; version="0.6.1"; sha256="14zcvd2cf2015r7b4y69176czznz69nzjp344ys262a8r31nliz5"; depends=[paws_common]; }; + paws_storage = derive2 { name="paws.storage"; version="0.6.0"; sha256="1mngxy88r94n1zwbvimj71hw4w9myk5kgqpgyj0m3spwv7338rfd"; depends=[paws_common]; }; pawscore = derive2 { name="pawscore"; version="1.0.3"; sha256="0pf8lczi0g3cwi4hxrz4lggphpkbabswj0sppm7h688ijb1ph9qg"; depends=[brglm2 signal]; }; pbANOVA = derive2 { name="pbANOVA"; version="0.1.0"; sha256="0m7946jv4zbs0k74klxkl8nbwirc48g6paqrfl5fadkd17xxqq2j"; depends=[DescTools dplyr lmtest MASS plyr Rmisc]; }; pbapply = derive2 { name="pbapply"; version="1.7-2"; sha256="04xf1p7c0066cwnxfmzaikbc322bxnw022ziv8kkhzlc6268rvdf"; depends=[]; }; pbatR = derive2 { name="pbatR"; version="2.2-17"; sha256="1i4rjq8p6j5d7nh9lyrz5zh2s7jf81ljl0jgam2nkrzx3vagy91r"; depends=[rootSolve survival]; }; pbbd = derive2 { name="pbbd"; version="1.0.0"; sha256="07g029qw5949500c879iv86zwg2fldqrz8wzfz335jmcinqimgj6"; depends=[ibd]; }; - pbcc = derive2 { name="pbcc"; version="0.0.4"; sha256="1bmb9zn9ryis1fnhr6gz24y1mxbi876hkss0kpyl359pbgiq46p3"; depends=[ggplot2 ggpubr qcc rgenoud]; }; + pbcc = derive2 { name="pbcc"; version="0.0.5"; sha256="09yx6p0v8pa049l85kwm0rw15amyna9r35kbbahby3lfb212syb2"; depends=[ggplot2 ggpubr qcc rgenoud]; }; pbdMPI = derive2 { name="pbdMPI"; version="0.5-1"; sha256="047pxra6n3pacyqg5qdg8dbz32s8bq8z9dyi5rvs0ax76vr1v8v4"; depends=[float]; }; pbdSLAP = derive2 { name="pbdSLAP"; version="0.3-5"; sha256="0l6w1kxn0clqi36lqg494d71dd3rv77v94nzqn0rp7zv33n63cnp"; depends=[pbdMPI]; }; pbdZMQ = derive2 { name="pbdZMQ"; version="0.3-11"; sha256="0ns0fpfsbx28iyxmas691i29sh1gia0bspx0flgj0w3khm6j0zns"; depends=[]; }; @@ -15147,6 +15394,7 @@ in with self; { pbm = derive2 { name="pbm"; version="1.2.1"; sha256="0nkqhrvlzf2imkq5pbni3c1k4vc75y26rra3czbchs111v7jrcqv"; depends=[]; }; pbmcapply = derive2 { name="pbmcapply"; version="1.5.1"; sha256="1p8jf7c4k45482w72sr0jw4jkz787krrxai3sl6jz5l4lda2iz3z"; depends=[]; }; pbo = derive2 { name="pbo"; version="1.3.5"; sha256="0grj5h06kz8w2p7rzdibg95zpy30r056w14hmy7ij3bpi98sm79z"; depends=[foreach lattice latticeExtra]; }; + pbox = derive2 { name="pbox"; version="0.1.8"; sha256="037wry356n3z5z4ggd6k5yna778134vjagaii1r4yahg15ksp7gk"; depends=[copula data_table gamlss gamlss_dist purrr stringr]; }; pbr = derive2 { name="pbr"; version="0.0.2"; sha256="1y984v487hqn22cnhn3cghbvn5bxpvpqsrsizjd06vjwnflpazg2"; depends=[htmltools httr jsonlite leaflet]; }; pbs = derive2 { name="pbs"; version="1.1"; sha256="0cpgs6k5h8y2cia01zs1p4ri8r7ljg2z4x8xcbx73s680dvnxa2w"; depends=[]; }; pbv = derive2 { name="pbv"; version="0.5-47"; sha256="14n7szbhasw0qly3cbzh4jw8plinbxarzdbj46vilq3am7ph8yp1"; depends=[Rcpp RcppArmadillo]; }; @@ -15172,18 +15420,19 @@ in with self; { pcgen = derive2 { name="pcgen"; version="0.2.0"; sha256="1v2fmxbj9gz5sg0hizw03ad8cfm9v25708h7fvnf6gb42b2mmyb3"; depends=[ggm graph Hmisc lme4 MASS Matrix pcalg sommer]; }; pch = derive2 { name="pch"; version="2.1"; sha256="15dvrcrbcql54wf011r1a3pl3v2b551mq0pf4wcr7wjrf330h1w3"; depends=[Hmisc survival]; }; pchc = derive2 { name="pchc"; version="1.2"; sha256="0h1b1n9mw22wsh51nciphgyqk2cp98qkm4wskxw4ryj6lyqjk4k2"; depends=[bigstatsr bnlearn dcov doParallel foreach Rfast Rfast2 robustbase]; }; + pci = derive2 { name="pci"; version="1.0.1"; sha256="08wfwy2ncm3cxbg31wimw0bd64lwwp19wsjd970zvwxs7wgpsdx2"; depends=[vek]; }; pcmabc = derive2 { name="pcmabc"; version="1.1.3"; sha256="1wrdbinc3y71q4ix8cb1vn4nhaa0bp9yxw1n8d5bzdyhg29df2hj"; depends=[ape mvSLOUCH phangorn yuima]; }; pcnetmeta = derive2 { name="pcnetmeta"; version="2.8"; sha256="18q3fprxzbmm2nsqazppjkl5rvbmn1s9985f2wmzm2dslwpm5a23"; depends=[coda rjags]; }; pco = derive2 { name="pco"; version="1.0.1"; sha256="0k1m450wfmlym976g7p9g8arqrvnsxgdpcazk5kh3m3jsrvrcchf"; depends=[]; }; - pcoxtime = derive2 { name="pcoxtime"; version="1.0.4"; sha256="1ill4vkkxv9iymknfkk72sff932l3jb0m70aga1skxkriyr02nwf"; depends=[doParallel foreach ggplot2 pec PermAlgo prodlim Rcpp RcppArmadillo riskRegression survival]; }; pcr = derive2 { name="pcr"; version="1.2.2"; sha256="1lmgm8k3s7780ivrdj0zk1ninx7b5jffir6q5p2p47h62qqjmp5d"; depends=[ggplot2]; }; pcse = derive2 { name="pcse"; version="1.9.1.1"; sha256="1rb9146vjkf36vc5v3frykmsff7kp6qp1hhmj8pak583in4rz8f8"; depends=[]; }; pcsstools = derive2 { name="pcsstools"; version="0.1.2"; sha256="0pqc6qpl95dxphi77wcgi0v22a1q455iqaplsrvg32cf0mn3gikg"; depends=[gtools Rdpack]; }; pct = derive2 { name="pct"; version="0.9.9"; sha256="15rshwdrfkr0ahnywss0qqbcyfxakknv9ffvb58nzc960c97zmy8"; depends=[boot crul readr sf stplanr]; }; + pctax = derive2 { name="pctax"; version="0.1.1"; sha256="153vbgs3fw3x5n20wn58r3958kqrzcx0y15z5xjyc0lzhc66bzfs"; depends=[ade4 dplyr ggnewscale ggplot2 ggpubr ggrepel magrittr pcutils RColorBrewer reshape2 scales tibble vegan]; }; pcts = derive2 { name="pcts"; version="0.15.7"; sha256="1cr44w561sh05qpi0jyf2ypj4dadwyqkbaqn347v533bywasip2h"; depends=[BB gbutils lagged lubridate Matrix mcompanion PolynomF Rdpack sarima xts zoo]; }; pcutils = derive2 { name="pcutils"; version="0.2.5"; sha256="1fq8gzc63951q87akjqklvi4mqy29wywg0hknw7mn5zs9bim0zdd"; depends=[dplyr ggplot2 magrittr RColorBrewer reshape2 scales tibble tidyr]; }; pcv = derive2 { name="pcv"; version="1.1.0"; sha256="03rpfxdpinr1a6964gch0j852h96jfk4sccs4bv1pzkvv2qsnzlr"; depends=[]; }; - pdR = derive2 { name="pdR"; version="1.9.1"; sha256="1vkgzkk5l2wjxldriqxjrkkvyyg6n3bhb69hx90ficnyy5q3z7s7"; depends=[]; }; + pdR = derive2 { name="pdR"; version="1.9.2"; sha256="1g7qs1x4794rdkb0z25qxqyg3mgq8b4iq7fbiz51s6sjrmdwljk4"; depends=[glmmTMB lme4 pglm plm]; }; pdSpecEst = derive2 { name="pdSpecEst"; version="1.2.4"; sha256="1sf2d7vh7a1qc0cq230an8pzg9qi9g640z0ql8x2pp9wfawfzn1f"; depends=[ddalpha multitaper Rcpp RcppArmadillo Rdpack]; }; pda = derive2 { name="pda"; version="1.2.7"; sha256="0cdbjp6yrbqhkznsr282iyy76nzw9dz8z0gz48y12czjk9k6nvfd"; depends=[data_table glmnet httr jsonlite MASS metafor minqa numDeriv ordinal plyr Rcpp RcppArmadillo rvest survival]; }; pdc = derive2 { name="pdc"; version="1.0.3"; sha256="0503n7aiy0qrl790yfjvpm7bbyz1i4818rlg96q0fvzb58zqmyvc"; depends=[]; }; @@ -15203,28 +15452,29 @@ in with self; { pdxTrees = derive2 { name="pdxTrees"; version="0.4.0"; sha256="0cw1zrkawc2wnbd2pif8732kl92qvklxvx6hnikx3siz22psvbl8"; depends=[dplyr magrittr rlang]; }; pdynmc = derive2 { name="pdynmc"; version="0.9.10"; sha256="1zz0q3s7cj3ypqz2hp3x2hy7d0m10130qdlk501l8w9z22f7raxq"; depends=[data_table MASS Matrix optimx Rdpack]; }; peRiodiCS = derive2 { name="peRiodiCS"; version="0.5.0"; sha256="1366gmn6qfciwcjsfnbl3hfa16ffn11g00fm0kv74ilvm3nnawk3"; depends=[Hmisc rms]; }; - peRspective = derive2 { name="peRspective"; version="0.1.1"; sha256="1dca7592h9yp8lfj866hjzg0d48c84v2kd9l5bsvkw935wwxwg2w"; depends=[crayon dplyr glue httr jsonlite magrittr purrr rlang rlist stringr tibble]; }; peacesciencer = derive2 { name="peacesciencer"; version="1.1.0"; sha256="06mlz2yjihm4xbdipv167ldf8z7r0ldwfn9day5c3lphg73fym5b"; depends=[dplyr geosphere lifecycle magrittr rlang stevemisc stringr tidyr]; }; + peacots = derive2 { name="peacots"; version="1.3.2"; sha256="1mhbch6y580pc07asm77zcwfmc99gvf7ibd0mrsgrg1mk6ybx4iy"; depends=[]; }; peakRAM = derive2 { name="peakRAM"; version="1.0.2"; sha256="0mj7f8jqkfky61xag2km0svbgvfmif3c1d8ccav6pv1963cg3cvv"; depends=[]; }; pearson7 = derive2 { name="pearson7"; version="1.0-3"; sha256="0vdhhds1lngaff7dkx4b1az3syqw8b22w2jskcrw0m49wp1dbbha"; depends=[]; }; pec = derive2 { name="pec"; version="2023.04.12"; sha256="15ggf3fa1p5r0dl7k2j99cc920jvmk0p1ny0jzyrpddh8fcgwlk5"; depends=[foreach lava prodlim riskRegression rms survival timereg]; }; pecora = derive2 { name="pecora"; version="0.1.1"; sha256="0l66brd5d24hn279ck785jy4qnxiv9lc3d1czh4f3l25d0hj99xi"; depends=[matrixStats Rcpp RcppArmadillo]; }; - pedFamilias = derive2 { name="pedFamilias"; version="0.2.0"; sha256="1zlnm6pj1x9wb5cjl5dzyzlqyxh5k82s86b1mg7kg5q7qhhmpj9s"; depends=[pedmut pedtools]; }; + pedFamilias = derive2 { name="pedFamilias"; version="0.2.2"; sha256="0fxwsamflw4vkw2hi0gmgkds0vx9yikda31s6fdcvnbjs1cpf1zd"; depends=[pedmut pedtools]; }; + pedMermaid = derive2 { name="pedMermaid"; version="1.0.2"; sha256="135pmjhhg2f8fgp3x5dddfssbfkdwxq86mlpqzhfiwn9pa07xbfc"; depends=[]; }; pedSimulate = derive2 { name="pedSimulate"; version="1.4.3"; sha256="11p7gkxzd9ajyivxnpw4mzdn4c812gihl8q0x5w6h3s9ixsk8qrl"; depends=[]; }; pedalfast_data = derive2 { name="pedalfast.data"; version="1.0.1"; sha256="027npj067r4cv0mdgd26x6ilrfz9a0hd0yagkkl3b06nx292pba5"; depends=[]; }; - pedbp = derive2 { name="pedbp"; version="1.0.2"; sha256="0yc6185i3jzpwkpmkm38vggyfba0pvz6hvzqfkl6ch591dvkldch"; depends=[ggplot2 scales]; }; + pedbp = derive2 { name="pedbp"; version="2.0.0"; sha256="1cs03920am54c944ca8xif5k154zwzrvb8pa8kr0j03nxymkp7dm"; depends=[ggplot2 Rcpp RcppArmadillo scales]; }; pedbuildr = derive2 { name="pedbuildr"; version="0.3.0"; sha256="1yq5ag62yf6qjkxvr4g0xggag0ic5gyby4y5vnhlakwn0h78yirv"; depends=[forrel glue pedmut pedprobr pedtools ribd]; }; - pedgene = derive2 { name="pedgene"; version="3.8"; sha256="150cfqk8krrjm8v173ag06ia95n30xvx6vvxhzyf15djniidfb6b"; depends=[CompQuadForm kinship2 Matrix survey]; }; + pedgene = derive2 { name="pedgene"; version="3.9"; sha256="18b0galqql6pci0bfy8k93p29mqsk707wz4lr72plnciqg04l5sf"; depends=[CompQuadForm kinship2 Matrix survey]; }; pedigree = derive2 { name="pedigree"; version="1.4.2"; sha256="1b3zhjn6sl1pnkfqim6xzk6qdak6acdpim585xhjl1rbc41540qx"; depends=[HaploSim Matrix reshape]; }; pedigreeTools = derive2 { name="pedigreeTools"; version="0.2"; sha256="048lpzg0mmbzdc5cd52ssvzlji5293xz7bpqy3cjjszwcfjppc6c"; depends=[Matrix]; }; pedigreemm = derive2 { name="pedigreemm"; version="0.3-4"; sha256="1fy9fq5g94p7v2s0yih1kj4in5gqmip8dd96pls0k9ixbgcqj95v"; depends=[lme4 Matrix]; }; pedmod = derive2 { name="pedmod"; version="0.2.4"; sha256="1xr98vp2s3s2cw4bjdw6156zas15jxvp9fbyz9rxd68i3zrblplx"; depends=[alabama BH psqn Rcpp RcppArmadillo testthat]; }; pedmut = derive2 { name="pedmut"; version="0.7.1"; sha256="1wjz0mqwwvxn44lyrdnns0zsadglfs50np8sy6b0w07bpr6izlii"; depends=[]; }; pedometrics = derive2 { name="pedometrics"; version="0.12.1"; sha256="06s1iyv2nldqqkh1n3cgl3a7ribk17kyadgfx76lpgy016fi7vz5"; depends=[lattice latticeExtra Rcpp]; }; - pedprobr = derive2 { name="pedprobr"; version="0.9.2"; sha256="0vir7x7qm4hjpcilcsqv9rpxky6fpjig0ybjv2m9nk4jpcszh8c8"; depends=[pedmut pedtools]; }; + pedprobr = derive2 { name="pedprobr"; version="0.9.4"; sha256="17gzrv43gz8r1y31vzmc1arkr4wvzirk64vps6d98gk0r4i5vv71"; depends=[pedmut pedtools]; }; pedquant = derive2 { name="pedquant"; version="0.2.4"; sha256="07b2jd3fryv3jdhp5wrsycnzfwhbx55dw34lxll60zn73m4ii24w"; depends=[curl data_table echarts4r httr jsonlite lubridate PerformanceAnalytics readr readxl rvest stringi TTR xefun zoo]; }; pedsuite = derive2 { name="pedsuite"; version="1.2.0"; sha256="1l7yyn8w1lsqlnd79vp2yaxyh6wrkxn4rm1kcbcv5bd9ivxc9k8b"; depends=[dvir forrel ibdsim2 paramlink2 pedbuildr pedmut pedprobr pedtools ribd segregatr verbalisr]; }; - pedtools = derive2 { name="pedtools"; version="2.5.0"; sha256="0nlabc5q90qzm506a9ys0nfpr89w42p50w3vxvp8s2sxin9xfngl"; depends=[kinship2 pedmut]; }; + pedtools = derive2 { name="pedtools"; version="2.6.0"; sha256="1df3dh0znwwp556krnfais7cs7970jzz8kgmmiiqz6c7g3acchrp"; depends=[kinship2 pedmut]; }; peermodels = derive2 { name="peermodels"; version="0.10.3"; sha256="116xn5w7rwm9q0m7bj4z29l4hspj2nqdcxzir9dqpdqmf7z58v67"; depends=[curl httr httr2 jsonlite stringr]; }; pegas = derive2 { name="pegas"; version="1.3"; sha256="1j1xrnwi80ycwziwcsb48sfdm2ifdzgsn8clh0ai7rvhknrb4ghh"; depends=[ape]; }; pell = derive2 { name="pell"; version="0.1.0"; sha256="1621lnv6sii072did3kj6wapgh9iiqajayvkrmz7q86bp89405sm"; depends=[]; }; @@ -15240,33 +15490,30 @@ in with self; { penalizedcdf = derive2 { name="penalizedcdf"; version="0.1.0"; sha256="17r9f7n6icn2yhfy5ibr8zccr10yq5k4vgyh59fgdzzf5qk407n3"; depends=[plot_matrix]; }; penalizedclr = derive2 { name="penalizedclr"; version="2.0.0"; sha256="1dg54h6mgy8s3bq3s4xmj4lj0z6wvf0nj5np81mfzzp6fhjqyxhm"; depends=[clogitL1 penalized survival]; }; penaltyLearning = derive2 { name="penaltyLearning"; version="2024.1.25"; sha256="0nvh5szn27dsvdr80ldgq9d2bqvfplp4hdcwgv5f6g2lfcsmiil8"; depends=[data_table ggplot2]; }; - pencal = derive2 { name="pencal"; version="2.1.1"; sha256="1ddiyygd6mv6qbr4z7i445hp8j0x0slxy56xz54vvdbv8l1gxlvg"; depends=[doParallel dplyr foreach glmnet lcmm magic MASS Matrix nlme purrr riskRegression survcomp survival survivalROC]; }; + pencal = derive2 { name="pencal"; version="2.2.2"; sha256="1wafrq4qgljycdmxhgc2jgbd2ayr9h4nbvss6l5dk2fxsq7yyv6x"; depends=[doParallel dplyr foreach glmnet lcmm magic MASS Matrix nlme purrr riskRegression survcomp survival survivalROC]; }; pencopulaCond = derive2 { name="pencopulaCond"; version="0.2"; sha256="18hjjxnd0l2ms20ddqkghfbd4as5kq2rgwqzpz4y38k6nw76x511"; depends=[doParallel fda foreach igraph lattice latticeExtra pacotest quadprog TSP]; }; pendensity = derive2 { name="pendensity"; version="0.2.13"; sha256="1wcsib7m2161nqqrmgdvrj7lr8zq6njc9xr935hwfh3qbbgkmfjb"; depends=[fda lattice]; }; penfa = derive2 { name="penfa"; version="0.1.1"; sha256="1r8lq4kvlwlk7q0mdzkrdm9sx7lqq4l27jfxa1zcfh50sk1qlam2"; depends=[GJRM MASS mgcv trust]; }; penppml = derive2 { name="penppml"; version="0.2.3"; sha256="1pxfnq5z7aygd2i3qcn2nvzvbw83gp4zhy3bavir3vpjd655llc3"; depends=[collapse devtools dplyr fixest glmnet magrittr matrixStats Rcpp RcppEigen rlang]; }; pense = derive2 { name="pense"; version="2.2.0"; sha256="1v077lmi7hs793yqv9m4ir0hd8s671714nj2gf3ya48qjmbizyg0"; depends=[lifecycle Matrix Rcpp RcppArmadillo rlang]; }; pensim = derive2 { name="pensim"; version="1.3.6"; sha256="18z43p1iswmnvwaf3k5vhv6rzzmfn618har0a0bl9j5nfzx20rpx"; depends=[MASS penalized]; }; - pensynth = derive2 { name="pensynth"; version="0.3.0"; sha256="1xwp53ljn6kprp7cbri7l106fvj2iil7cqpwrgm5x2521g3vwqi6"; depends=[clarabel geometry]; }; + pensynth = derive2 { name="pensynth"; version="0.5.1"; sha256="1ph3552y3jsm9kmv68bx15xn383djq2yhc34rpvazc8dyd3impkv"; depends=[clarabel Matrix]; }; peopleanalytics = derive2 { name="peopleanalytics"; version="0.1.0"; sha256="0ay85yxx30p4i8icn8l8ppjddiwkbw1g6ymnmvw5gnd9hgmwbrx0"; depends=[]; }; peopleanalyticsdata = derive2 { name="peopleanalyticsdata"; version="0.2.1"; sha256="0ig65y4sl6wagzcvj8wwjw2dblb61hgbsqvp76wvxbhga1q0wnpf"; depends=[]; }; pepe = derive2 { name="pepe"; version="1.2.0"; sha256="1ihms63crxq0k7hd2yjyxmfw0yfy668srw012vi8mf8p31jdcr3j"; depends=[dplyr ggplot2 psych tidyr]; }; peperr = derive2 { name="peperr"; version="1.5"; sha256="0045bc206y13467kw5xh3awkwcz24sb5xmdcgh5x1w6q1cab7ygp"; depends=[snowfall survival]; }; peppm = derive2 { name="peppm"; version="0.0.1"; sha256="1lvk1rjsx39mb93s9pclriw4fmf1sx05s59qqx5m3aqb4q8ffxkg"; depends=[Rcpp]; }; pepr = derive2 { name="pepr"; version="0.5.0"; sha256="0q2pfsch6g3zhaj6cffg6rzmlrmzwpvny84nls6x5jjljhan4nzz"; depends=[data_table pryr RCurl stringr yaml]; }; - peptider = derive2 { name="peptider"; version="0.2.2"; sha256="109z81x6jcsx2651lclff7ak55zb1i89pyi58rxri40aamx4b1x2"; depends=[discreteRV dplyr plyr]; }; peptoolkit = derive2 { name="peptoolkit"; version="0.0.1"; sha256="067x3v8m3ph2mqcglbd2h4y7xsslcvdr5iailiqxzfqg77mcqxx6"; depends=[caret dplyr Peptides stringr]; }; - pequod = derive2 { name="pequod"; version="0.0-5"; sha256="0mwrgyrxgiifpnpy15qxpdrdmd7dxqihccrnj5nh8fq9fvwymamg"; depends=[car ggplot2]; }; perARMA = derive2 { name="perARMA"; version="1.7"; sha256="1d3gg5yb2gj3mfmk72lps40hkiaf65wv7zhhgxf918kqyqi5zhs2"; depends=[corpcor gnm matlab Matrix signal]; }; peramo = derive2 { name="peramo"; version="0.1.3"; sha256="0ngzf6piglr00r4i1m3r9mvlw67hs96lbfxv832vwisf631fdvlf"; depends=[dplyr emmeans lme4 magrittr parameters]; }; perccalc = derive2 { name="perccalc"; version="1.0.5"; sha256="14557k7khc3l5m0vlam0fvbsb6p78v9gfcnx5ksxcvrab28xj7p3"; depends=[multcomp tibble]; }; - performance = derive2 { name="performance"; version="0.11.0"; sha256="03zs162lah8yv2x2q829ifc3jwy7m89r6md4ildjz8qmfjf0js82"; depends=[bayestestR datawizard insight]; }; + performance = derive2 { name="performance"; version="0.12.0"; sha256="0py6b1mix26z7fmarya7gfa9bwb8ymsr7z78ag8kld6ih3slga7z"; depends=[bayestestR datawizard insight]; }; performanceEstimation = derive2 { name="performanceEstimation"; version="1.1.0"; sha256="08jx2zl6xh0rp54xa70gb717wbfdzfrx9b47i3b3ly41qaf85vrc"; depends=[dplyr ggplot2 parallelMap tidyr]; }; - pergola = derive2 { name="pergola"; version="1.0"; sha256="1650ipp2b455xdkznwm7bnxvimad7nbyr9i1lg2vdh64j1qfh7gl"; depends=[seriation]; }; periscope = derive2 { name="periscope"; version="1.0.4"; sha256="0w7p8clpaa605jcyvlkj86w8l92pgvilifwnagqj3x1nqaxgyhw3"; depends=[DT fresh ggplot2 lubridate shiny shinyBS shinydashboard writexl yaml]; }; periscope2 = derive2 { name="periscope2"; version="0.2.3"; sha256="00zjap5l8aqyn6ykf3vmhsgiahkkgzkakjzc7z0wlm5ksv0cskdm"; depends=[bs4Dash DT fresh lifecycle lubridate shiny shinyFeedback shinyWidgets writexl yaml]; }; perm = derive2 { name="perm"; version="1.0-0.4"; sha256="1sbvc9pd8j4wigblncd5jsgfnphp4kz1jy3acyivcclh79wh27jn"; depends=[]; }; - permChacko = derive2 { name="permChacko"; version="0.2.0"; sha256="1jcgg0v7a70sw02qw6kxyc58kn4rczcrvgwsjpg9sj4ybgax42s9"; depends=[]; }; + permChacko = derive2 { name="permChacko"; version="1.0.0"; sha256="0wnq6wgh78cp8d0xab00fb94p9sm67412dvxrki56rajjsagclqq"; depends=[]; }; permGS = derive2 { name="permGS"; version="0.2.5"; sha256="0d2kp3c1fmnjjmsvc2qwh6m66yqvy2vrrxgv1fj2i4clsbavfa0y"; depends=[coin survival]; }; permPATH = derive2 { name="permPATH"; version="1.3"; sha256="1xjhpndlqdafv7g5yrps2rby8by76sh6y7kg2jhwbh6bv7x0d975"; depends=[R2HTML xtable]; }; permimp = derive2 { name="permimp"; version="1.0-2"; sha256="1zq513bkallkkqghjilvgc5iw0pcglrdyc0r2sns4ck07a3q378j"; depends=[ipred party randomForest survival]; }; @@ -15276,6 +15523,7 @@ in with self; { permutations = derive2 { name="permutations"; version="1.1-2"; sha256="0ilwf5d3cl6vv7dgdcdw4crlrxa6h5q4d3z17la71k3cz6ib3hvk"; depends=[freealg magic mathjaxr numbers partitions]; }; permute = derive2 { name="permute"; version="0.9-7"; sha256="1h4dyhcsv8p3h3qxsy98pib9v79dddvrnq7qx6abkblsazxqzy7g"; depends=[]; }; permutes = derive2 { name="permutes"; version="2.8"; sha256="1ibpjg72vfvw3yvldqka0c70ydxvl2vbpqv1cn07yiwf7l0d5f51"; depends=[plyr]; }; + perplexR = derive2 { name="perplexR"; version="0.0.3"; sha256="19rxk8xf7pb8mbd4j6zdxwj62hfzczx8nvbh7qqlnib2w6pgdpw2"; depends=[clipr httr jsonlite miniUI rstudioapi shiny]; }; perry = derive2 { name="perry"; version="0.3.1"; sha256="0c3i9dc6hfdjfkjq2p630w6l1pz21mmqb8p0ikv6m159cfl3i3nq"; depends=[ggplot2]; }; perryExamples = derive2 { name="perryExamples"; version="0.1.1"; sha256="1abfrri0lq7iwdlk1qfzlq8378xpyvzfwcg1i18rmndfwsyyihjp"; depends=[lars perry quantreg robustbase]; }; persDx = derive2 { name="persDx"; version="0.5.0"; sha256="14lafg5xhpp7m2shhf7ymfikl83ldqzssji61vwgqhvk78kaw3dc"; depends=[pROC survivalROC]; }; @@ -15290,6 +15538,7 @@ in with self; { perutimber = derive2 { name="perutimber"; version="0.1.0"; sha256="119zilijflhj8a9hn4swdpgy99ffa9n7b53wphgi4641hlnlpif5"; depends=[lifecycle]; }; pesel = derive2 { name="pesel"; version="0.7.5"; sha256="06d10yzarnfifvdx6lch4fpag5qignjpij513kip1d9afrs3gm73"; depends=[]; }; pestr = derive2 { name="pestr"; version="0.8.2"; sha256="15w89cipky9di4csbp0cbw7s3qslr5mk94wivps77i3k0j9ys74g"; depends=[curl DBI dplyr httr jsonlite magrittr readr rlang RSQLite tidyr]; }; + petersenlab = derive2 { name="petersenlab"; version="1.0.0"; sha256="1333k1kcy1ih9z09bl37zalsqrgf2xkqkqnsm28clc0r5np8df1d"; depends=[digest dplyr ggplot2 Hmisc lavaan mitools mix mvtnorm nlme plyr psych RColorBrewer reshape2 scales stringr tidyselect viridisLite xtable]; }; petitr = derive2 { name="petitr"; version="1.0"; sha256="0i13zhdrdka0ij0khdzj6ylvvcn4wxvplb8a368i1s64cpgak30c"; depends=[]; }; petrinetR = derive2 { name="petrinetR"; version="0.3.0"; sha256="0s67clfpphwxx8lyb2559sk6i6a5zmxdds0pzfj23blbacnlk16c"; depends=[DiagrammeR dplyr lifecycle purrr visNetwork xml2]; }; pewdata = derive2 { name="pewdata"; version="0.3.2"; sha256="1a4ci8hzpmwxs48lsppswcwkxv72yn44w486m9izwvx8wr1nlh2d"; depends=[foreign magrittr purrr rio RSelenium stringr]; }; @@ -15304,7 +15553,7 @@ in with self; { pgam = derive2 { name="pgam"; version="0.4.17"; sha256="03sln908xwg909m3pxi6ihpq3vzb0v0mj6yac7bx29x5rxcd6psy"; depends=[]; }; pgdraw = derive2 { name="pgdraw"; version="1.1"; sha256="1s1b1izpgryrqsjkdh3yvr137054sipj3kwdkzlx2af8xjr53f85"; depends=[Rcpp]; }; pgee_mixed = derive2 { name="pgee.mixed"; version="0.1.0"; sha256="115vvpv54q80486i3xs2yhmfyx476cf4g1v43q6l7wj3jwzcrvbg"; depends=[copula mvtnorm Rcpp RcppArmadillo]; }; - pgenlibr = derive2 { name="pgenlibr"; version="0.3.5"; sha256="1njc0y2pni834wj73cpvx40hw5v8ggnzmmalbrj0iw9zjn4729py"; depends=[Rcpp]; }; + pgenlibr = derive2 { name="pgenlibr"; version="0.3.7"; sha256="1wbbm4n9ilwwa7mgb3z81nj0kh11nrgbfbc936cb95pjgs18v4h3"; depends=[Rcpp]; }; pgirmess = derive2 { name="pgirmess"; version="2.0.3"; sha256="1c1sccpc31xxrdmvybl1xviwfwq05mdhfk2brfaf0mq8kb7p2lkn"; depends=[boot sf sp spdep]; }; pglm = derive2 { name="pglm"; version="0.2-3"; sha256="16ghdgnpwyqgfa6z6gc93bw933dvazb3alv1867cbn7qnp2gaj3j"; depends=[Formula maxLik plm statmod]; }; pgmm = derive2 { name="pgmm"; version="1.2.7"; sha256="08fz5la19fnzsk80d1nsqg0fd27z3bq3s8kzizj11r5k1fn95sy8"; depends=[]; }; @@ -15320,8 +15569,8 @@ in with self; { pharmaRTF = derive2 { name="pharmaRTF"; version="0.1.4"; sha256="1h16r4yhlm6mbwq3k24ssm70bsrg2hvykqh8dayigz5wi2nq5c1f"; depends=[assertthat huxtable purrr stringr]; }; pharmaverse = derive2 { name="pharmaverse"; version="0.0.2"; sha256="0wvil5fswdzfvmqii5j7y81ik2bwjznywb8c9nj3yd99az96qxg4"; depends=[httr]; }; pharmaverseadam = derive2 { name="pharmaverseadam"; version="0.2.0"; sha256="18pmbvjy4v7182kriffp733snb84inqjii6gj1g0l5ahh24k7xim"; depends=[]; }; - pharmaversesdtm = derive2 { name="pharmaversesdtm"; version="0.2.0"; sha256="1xbpvf3xf4n94q52makvrmfjgsqg8syx0rza0g93srqnsmrka7i1"; depends=[]; }; - pharmr = derive2 { name="pharmr"; version="0.96.0"; sha256="0kwa3jvchayx7jkfp896h0dkq2h2nw5wj0fpnqvspfj0r94pg8m1"; depends=[altair reticulate]; }; + pharmaversesdtm = derive2 { name="pharmaversesdtm"; version="1.0.0"; sha256="0nd6v6lg8a05z83f1h2wqan5vq7p26hvkrjh36f6521aakw4if74"; depends=[]; }; + pharmr = derive2 { name="pharmr"; version="1.0.1"; sha256="0vxaas0rrzfcia47bhqd54d2sjnwgx3djbfy9ggf2hr3cw3dz7fg"; depends=[altair reticulate]; }; phase = derive2 { name="phase"; version="1.2.9"; sha256="12v453jn99jzvicr5xipzkgb1yqmrkv9gbpw7ykl19kakw7qnqs3"; depends=[behavr circular lubridate plotly pracma shiny shinycssloaders shinydashboard shinyFiles shinythemes signal wesanderson zeitgebr zoo]; }; phase1PRMD = derive2 { name="phase1PRMD"; version="1.0.2"; sha256="0gr73nsp0an0ci6l86h9fw6l791jdw0b1497qi58w25zypggdyac"; depends=[arrayhelpers coda dplyr ggplot2 gridExtra kableExtra knitr MASS plyr RColorBrewer reshape2 rjags]; }; phase1RMD = derive2 { name="phase1RMD"; version="1.0.9"; sha256="0dnyqa6jias2jqjqjpiq32jnd21ghb2shw45vdq8b5xyb8rxclwj"; depends=[arrayhelpers boot coda ggplot2 mvtnorm rjags]; }; @@ -15349,20 +15598,22 @@ in with self; { phia = derive2 { name="phia"; version="0.3-1"; sha256="1lsprm49njwp0gfn4knvwdq7d5lpq4irhysl8f26glcz9x929sff"; depends=[car Matrix]; }; philentropy = derive2 { name="philentropy"; version="0.8.0"; sha256="0gmycszk86mc9clmxfdrspqh5z0g3cw2cgzaaqngxx38h68x99is"; depends=[KernSmooth poorman Rcpp]; }; phm = derive2 { name="phm"; version="1.1.2"; sha256="05ymrynv5zzrbj3vsdrijay841hv5jbkn8c0v4l6dqndysl9xis4"; depends=[data_table Matrix NLP shiny smallstuff tm]; }; - phoenix = derive2 { name="phoenix"; version="1.0.0"; sha256="17szlh7dqi3xd9y3knwyflsk8paypgzgrdzvzn77y8g6s5z2jnss"; depends=[]; }; + phoenics = derive2 { name="phoenics"; version="0.1"; sha256="06312f3awzpgfhzl4ahla37hkw0nqyw8zb5yv7m25i53x0afxwr5"; depends=[blme factoextra FactoMineR lme4 tibble tidyr]; }; + phoenix = derive2 { name="phoenix"; version="1.1.0"; sha256="1yhjbj1wgjlywa965d89pzk9c8gm3bjaapmi2dpdf7nzj9114n9r"; depends=[]; }; phonR = derive2 { name="phonR"; version="1.0-7"; sha256="0al2cbynnbvmd90lk1w1g1ppslqq0ng8vbb6bl7m4kqwd2lgv056"; depends=[deldir plotrix splancs]; }; phonTools = derive2 { name="phonTools"; version="0.2-2.2"; sha256="0r5ylbxvzpa23yys4rxdlglfc5jq997ziw6yf8v9jyavy4p1ppkx"; depends=[]; }; phonenumber = derive2 { name="phonenumber"; version="0.2.3"; sha256="1gwh7cg1zyy197sj16wcxqyz2rx5z83cd4rwmf22ycpgvz2dwzw9"; depends=[]; }; + phonfieldwork = derive2 { name="phonfieldwork"; version="0.0.14"; sha256="130gcpcblniasnqjjp085225ccq98wyqhcknxcn0iqs4v6m59dyc"; depends=[mime phonTools readr rmarkdown tuneR xml2]; }; phonics = derive2 { name="phonics"; version="1.3.10"; sha256="1g4gmfz190xaj800gawl79fzhmgimssa31kqzw8a70scp5psz3fw"; depends=[BH data_table Rcpp]; }; - phosphoricons = derive2 { name="phosphoricons"; version="0.2.0"; sha256="0g9qqgxnzi773mjrrzvlykmvqb7dpi2gxc999arbxkdnbp1lv463"; depends=[htmltools]; }; - photobiology = derive2 { name="photobiology"; version="0.11.1"; sha256="014192fikcb9q0bb0d8q7qxrw47kziwhfp2fbskh6n0npi2djvay"; depends=[dplyr lubridate plyr polynom rlang splus2R stringr tibble tidyr zoo]; }; + phosphoricons = derive2 { name="phosphoricons"; version="0.2.1"; sha256="0p14gw09im5zzpsfl0dr9xpcs0c0585flrk3hv2k62ww5n9wcymn"; depends=[htmltools]; }; + photobiology = derive2 { name="photobiology"; version="0.11.2"; sha256="1vsxkcjng0cdjzg76k944cm01jfmq52vqqwvblsq6hr8klbcvp8k"; depends=[dplyr lubridate plyr polynom rlang splus2R stringr tibble tidyr zoo]; }; photobiologyFilters = derive2 { name="photobiologyFilters"; version="0.6.0"; sha256="03shhykqwmmcpkzpy42kb3rn5n5kwahhjmbmspqnli5vfdvq4gim"; depends=[photobiology]; }; photobiologyInOut = derive2 { name="photobiologyInOut"; version="0.4.27"; sha256="1z5vyh44mp4nfp3b2piv6fs8b6k963yw0zb2dgiz8qfgzsyfhnzr"; depends=[anytime colorSpec dplyr lubridate photobiology readr readxl stringr tibble tidyr tidyselect]; }; photobiologyLEDs = derive2 { name="photobiologyLEDs"; version="0.5.2"; sha256="0868ja97wy0cj3nia31xp646yni0q56na87rz63pb33spkw36r6p"; depends=[photobiology]; }; photobiologyLamps = derive2 { name="photobiologyLamps"; version="0.5.2"; sha256="1sl6340zblq6j3djdygqydf9x0bh5jm0mir8j1jjw2snbppy6dfl"; depends=[photobiology]; }; - photobiologyPlants = derive2 { name="photobiologyPlants"; version="0.4.3"; sha256="0s3c3x7l3q8a8zaf9nww7w551mdracp6ljy08959p3sgmrjic4kw"; depends=[photobiology photobiologyWavebands]; }; + photobiologyPlants = derive2 { name="photobiologyPlants"; version="0.5.0"; sha256="0va72n6fa5w0xffyyhqsmpgy4ac6mva5gxdxl907ch1d02r8zgya"; depends=[photobiology photobiologyWavebands]; }; photobiologySensors = derive2 { name="photobiologySensors"; version="0.5.1"; sha256="0jc801c8fm5fdbs67nc8d5cga9c2cfdfrjh6i6qf60g7kxddsnsf"; depends=[photobiology]; }; - photobiologySun = derive2 { name="photobiologySun"; version="0.4.1"; sha256="15wp8q29m5c4qplind9098ikxmm1r60lw8cm0pa48lmh33638ia3"; depends=[photobiology]; }; + photobiologySun = derive2 { name="photobiologySun"; version="0.5.0"; sha256="00mb44wk5q8slvibr2iafwljr9w7m5qf0zk6bn5zji5i4l01gpi5"; depends=[photobiology]; }; photobiologyWavebands = derive2 { name="photobiologyWavebands"; version="0.5.2"; sha256="0p4as2kpcjy0mc38pmjjlpngbf4568zn5rpz9rhrlc0ynarrgnzj"; depends=[photobiology]; }; photosynthesis = derive2 { name="photosynthesis"; version="2.1.4"; sha256="1bilhqzhwxanlxvn98piysv45bpw7zh7f5w56rvllxgrpmra68pq"; depends=[checkmate crayon dplyr furrr ggplot2 glue gunit lifecycle magrittr minpack_lm nlme progress purrr readr rlang stringr tealeaves units]; }; phrases = derive2 { name="phrases"; version="0.1"; sha256="1am90fgi8bqf4mmw797knczj7pv7py2in4rm0m6l1xz4zfjihqw3"; depends=[tidyverse usethis]; }; @@ -15371,6 +15622,7 @@ in with self; { phuassess = derive2 { name="phuassess"; version="1.1"; sha256="0jplj9gih32dllx2hw5aqvc9b94sbrbv66s3a5r8mdbpjh93rhng"; depends=[]; }; phyclust = derive2 { name="phyclust"; version="0.1-34"; sha256="1wzmd02ng7zphn97xdra3hgivrxqpizqcy5kpg45sk7jx4q7016j"; depends=[ape]; }; phyext2 = derive2 { name="phyext2"; version="0.0.4"; sha256="0j871kgqm9fll0vdgh071z77ib51y8pxxm0ssjszljvvpx1mb8rb"; depends=[ape phylobase]; }; + phylepic = derive2 { name="phylepic"; version="0.2.0"; sha256="16ll8w5zsdiw48rhz3gl3svp7xiwjap0bwy6hpjpyvsk6dzjx3mi"; depends=[ape cli cowplot dplyr forcats ggnewscale ggplot2 ggraph igraph rlang scales tidygraph vctrs]; }; phylin = derive2 { name="phylin"; version="2.0.2"; sha256="0v6fyk2prja448vdi7ipwzws28fjfi188pfncjf9mhn8jrgpfxl6"; depends=[]; }; phyloTop = derive2 { name="phyloTop"; version="2.1.2"; sha256="1f7sr0qp5i0kj1j2xr7fwpkjnpfnpdjy51dx33yz2q8jmn2axxdf"; depends=[ape igraph NHPoisson phylobase]; }; phylobase = derive2 { name="phylobase"; version="0.8.12"; sha256="084gfzq51acmvzbsfpkqv3kgghdbncnwr008f95yf5b2vihcm0cv"; depends=[ade4 ape Rcpp rncl RNeXML]; }; @@ -15380,11 +15632,11 @@ in with self; { phylogram = derive2 { name="phylogram"; version="2.1.0"; sha256="1p4h5pirc0m5pzc18q0jk3mcmb5n48gdf9abz03vml3a209xxl2v"; depends=[ape]; }; phylolm = derive2 { name="phylolm"; version="2.6.2"; sha256="04pz7i44s8w6py4nk2zilzjlkrf1c5dbb6jij7zfkk49hvslbynn"; depends=[ape future_apply]; }; phylometrics = derive2 { name="phylometrics"; version="0.0.1"; sha256="1pmr6l3wmaf91wdlsc5m63l07fibngnly2qzkma0rdi463ii03il"; depends=[mvtnorm]; }; - phylopath = derive2 { name="phylopath"; version="1.2.1"; sha256="1s00sj9wmmq554lx5s55akznad80vhzs546fqsa0fzz20pnshs8n"; depends=[ape future_apply ggm ggplot2 ggraph igraph MuMIn phylolm purrr tibble]; }; + phylopath = derive2 { name="phylopath"; version="1.3.0"; sha256="1a99b55xi28d0nygnb6y4a1n9y28zjz2sw6k0hfv09kb3xzr03wy"; depends=[ape future_apply ggm ggplot2 ggraph igraph phylolm purrr tibble]; }; phyloraster = derive2 { name="phyloraster"; version="2.1.0"; sha256="0xildxiv8k2hrxdp0zkf939zbag62griq1ksalq0vfb32sb5l106"; depends=[ape SESraster terra]; }; phyloregion = derive2 { name="phyloregion"; version="1.0.8"; sha256="10i5s3dv71nr0m3wmph2rynzg9zj8xqzb6a25r5kj66r8v91jz3d"; depends=[ape betapart clustMixType colorspace igraph maptpx Matrix phangorn predicts smoothr terra vegan]; }; phylosamp = derive2 { name="phylosamp"; version="1.0.1"; sha256="1y48c4qjcxcxia2ggp2dfi051z8zpp0a0ks3a7h69gsw34vh9kd7"; depends=[cli lifecycle rlang]; }; - phylosem = derive2 { name="phylosem"; version="1.1.3"; sha256="13yyvja5ayznbk751l0al2j0d7jpbv0jfkqrsfw73913r0b6w6kb"; depends=[ape phylobase phylopath RcppEigen sem TMB]; }; + phylosem = derive2 { name="phylosem"; version="1.1.4"; sha256="0x93v0316xd79ab0pdc0w4pb4ljds89ihpp7a61kfdla7v2548bj"; depends=[ape phylobase phylopath RcppEigen sem TMB]; }; phyloseqGraphTest = derive2 { name="phyloseqGraphTest"; version="0.1.1"; sha256="0kp7ll92zcgzjlipp75xz0x1jiyp6d96qg8nzpj8f3y4dvhkppf5"; depends=[ggnetwork ggplot2 igraph phyloseq]; }; phylosignal = derive2 { name="phylosignal"; version="1.3.1"; sha256="13gahqnxvqzvyr4x1aq3cq08832ljizsa5c71hf44175dfmdz5cd"; depends=[adephylo ape boot DBI igraph phylobase Rcpp RcppArmadillo]; }; phylotate = derive2 { name="phylotate"; version="1.3"; sha256="092kvn32j06vm8ilwjkgidcz11r3qhsmi0cb0g0nnykw0a0vii4p"; depends=[]; }; @@ -15393,9 +15645,8 @@ in with self; { phyr = derive2 { name="phyr"; version="1.1.0"; sha256="0jvjxvxx2nz9ra9vp00bmm3dxr2am4zs8cvxij8w4jjyskznxc96"; depends=[ape dplyr gridExtra latticeExtra lme4 Matrix mvtnorm nloptr Rcpp RcppArmadillo tidyr]; }; phyreg = derive2 { name="phyreg"; version="1.0.2"; sha256="0m1psq79zl7h8791pl8g6i0ybda7vgddza8r9mwqhg4sw1q4bzcp"; depends=[]; }; physiology = derive2 { name="physiology"; version="1.2.1"; sha256="1z7xymwgj7bqn0yvcz3q8pvwhpr5vx5qd0x8sayal1vgpqc0nccb"; depends=[Rcpp]; }; - phytoclass = derive2 { name="phytoclass"; version="1.0.0"; sha256="0ci2xzhxzg8fmdjr1ij8r551mm5gzwcxbq328qnzkx8hyph7fbgf"; depends=[bestNormalize dplyr dynamicTreeCut ggplot2 Metrics RcppML tidyr]; }; - phytools = derive2 { name="phytools"; version="2.1-1"; sha256="05035zv9605hr4ig42k3krijaqkbbh9fvv4w5384fz1wlgqap0c6"; depends=[ape clusterGeneration coda combinat doParallel expm foreach maps MASS mnormt nlme numDeriv optimParallel phangorn scatterplot3d]; }; - piRF = derive2 { name="piRF"; version="0.1.0"; sha256="04k09ylc6hqw57dlv7sfnisn1167dr550y1j9xl7prvlf3jksg06"; depends=[Rdpack]; }; + phytoclass = derive2 { name="phytoclass"; version="1.2.0"; sha256="12b1xmzwcp90km4irjsrnks44b1rd82p8yn9cn4m6hsaiq6mb45c"; depends=[bestNormalize dplyr dynamicTreeCut ggplot2 Metrics RcppML tidyr]; }; + phytools = derive2 { name="phytools"; version="2.3-0"; sha256="10fh8svaxdk7s9abbzih9pj6carmv4r6fzbxlfafygxyjnk20c4p"; depends=[ape clusterGeneration coda combinat DEoptim doParallel expm foreach maps MASS mnormt nlme numDeriv optimParallel phangorn scatterplot3d]; }; piar = derive2 { name="piar"; version="0.7.0"; sha256="04m2xcym1pm0v6riz18mdfjzhgw9hpi67djym2a15970av15ld9l"; depends=[gpindex Matrix]; }; picClip = derive2 { name="picClip"; version="0.1.0"; sha256="1gxl9v39zm2hx04rdfnnbrg6q5rnpzj7aybva6zxh3skfi0dbidr"; depends=[base64enc htmltools shiny stringr testthat]; }; picR = derive2 { name="picR"; version="1.0.0"; sha256="0x5a9qgn66w06sl2c448ricby1bqiw3cpli1mnpslanym7m60nsb"; depends=[]; }; @@ -15405,7 +15656,7 @@ in with self; { pid = derive2 { name="pid"; version="0.50"; sha256="05s3xqf95d4avh7gkr49jsm8jzacbv694c3wgppkkc40zip6vkc7"; depends=[DoE_base FrF2 FrF2_catlg128 ggplot2 png]; }; piecemaker = derive2 { name="piecemaker"; version="1.0.2"; sha256="15zk36cpip49286djl45qqdfbj4w3yc6if1vk4bqphrascrg2val"; depends=[cli glue rlang stringi stringr]; }; piecepackr = derive2 { name="piecepackr"; version="1.13.10"; sha256="1pplmwgi0wyp4qx6arlh96qiqxhlwb77g57bx70r10p99pfmjhyn"; depends=[gridGeometry grImport2 jpeg png purrr R6 rlang stringr tibble]; }; - piecewiseSEM = derive2 { name="piecewiseSEM"; version="2.3.0"; sha256="0f1ya6p85iai52cdm510zm6qvkpsfkn48948q8lz9v6ykz59v5h2"; depends=[car DiagrammeR emmeans igraph lme4 MASS multcomp MuMIn nlme performance]; }; + piecewiseSEM = derive2 { name="piecewiseSEM"; version="2.3.0.1"; sha256="0cgzvfcc0pwz4qvdmx7xj5wl8cki2ss0kjmlqz2kmxklfiz3y5c0"; depends=[car DiagrammeR emmeans igraph lme4 MASS multcomp MuMIn nlme performance]; }; piggyback = derive2 { name="piggyback"; version="0.1.5"; sha256="1vkawf3jk8ddzapgvbixzq2kswnprfpjkvinby4z5x9gg535lfwq"; depends=[cli fs gh glue httr jsonlite lubridate memoise]; }; pillar = derive2 { name="pillar"; version="1.9.0"; sha256="1k3sp37dpn46d2xbq621alpvzgnm06x5qb87nk169y47q23b8gpj"; depends=[cli fansi glue lifecycle rlang utf8 vctrs]; }; pim = derive2 { name="pim"; version="2.0.2"; sha256="0kwlm6n23ccs0jz4plsqprg6inj3qv74zhvg9gpxyj3ksvdxp58i"; depends=[BB nleqslv]; }; @@ -15420,16 +15671,16 @@ in with self; { pinterestadsR = derive2 { name="pinterestadsR"; version="0.1.0"; sha256="0fjnb9kp3s3v7xp8cwrdljms6vwldq3n37lz5ly0j6wsw4p4ssx5"; depends=[jsonlite]; }; pinyin = derive2 { name="pinyin"; version="1.1.6"; sha256="0rw9qd5hbcmpi30vdqs31ijy37d8jlpqv0xif2nndb8cwj8x5bw2"; depends=[data_table splitstackshape]; }; pipe_design = derive2 { name="pipe.design"; version="0.5.1"; sha256="0r0szkdzifxmnnbr6675w8ij4zwqgxj3gwahc7a74mxr51f7qh8j"; depends=[ggplot2 gtools xtable]; }; - pipeGS = derive2 { name="pipeGS"; version="0.4"; sha256="0ki4i70r5f195b4jfv3hxlxz3zj57mhy2yf4984bwr11impilz5w"; depends=[]; }; pipeR = derive2 { name="pipeR"; version="0.6.1.3"; sha256="16lj227x24pviqb4dcrj7a55l31p5mm0cbwsb6m3y3n6k5wcd2nh"; depends=[]; }; pipebind = derive2 { name="pipebind"; version="0.1.2"; sha256="0z9xs4q06bis9xmzx260c0jn7v5vwvsrjlq32xd42vp56m0f63vw"; depends=[]; }; pipefittr = derive2 { name="pipefittr"; version="0.1.2"; sha256="0pzd7f0rhn0rydncki666zlajdwyiay3apa17cb0xy5454d99mvh"; depends=[magrittr miniUI rstudioapi shiny stringr]; }; pipeliner = derive2 { name="pipeliner"; version="0.1.1"; sha256="1cyyd1bin89dh0zrhic3i541bj8nnaphg6jq2jqkhnxn2nvax11g"; depends=[]; }; + pipenostics = derive2 { name="pipenostics"; version="0.2.0"; sha256="1pqv5jz3dm5k7ldvja7h5s8zd0mbgm1dbkfmfppnxhv2nmnzm3p1"; depends=[checkmate iapws]; }; piqp = derive2 { name="piqp"; version="0.2.2"; sha256="0cipmcbxfyply01kccv0bycip4lcg46s15g97fms8qijhpwi2n3c"; depends=[Matrix R6 Rcpp RcppEigen]; }; piratings = derive2 { name="piratings"; version="0.1.9"; sha256="0krrcf2bwicdf9fn657vkcjg5zliwi82hw3xmaqi46mdix8896gh"; depends=[ggplot2]; }; pisaRT = derive2 { name="pisaRT"; version="2.0.2"; sha256="1dpskdi4kd9zajj2pl7n686sd2w8kai7zilrwsrcfgl1dkfr1m82"; depends=[]; }; piton = derive2 { name="piton"; version="1.0.0"; sha256="1krf6zi238m275nxjlpyayv8y2drbgs2kg19dpkqm0lmlz5y5ar8"; depends=[Rcpp]; }; - pivmet = derive2 { name="pivmet"; version="0.5.0"; sha256="15fq48grdsmgr3ximar8g45jhlbix6745965rfwl9sjwvwk1bb9q"; depends=[bayesmix bayesplot cluster corpcor MASS mclust mvtnorm rjags rstan runjags scales]; }; + pivmet = derive2 { name="pivmet"; version="0.6.0"; sha256="0cz8grr03w29dnlhmf5r8yjcklhw6qz8rdf8ng1hdqcbp3ysplhk"; depends=[bayesmix bayesplot cluster corpcor MASS mclust mvtnorm rjags rstan runjags scales]; }; pivotaltrackR = derive2 { name="pivotaltrackR"; version="0.2.0"; sha256="141aaanb00qc3z4mdws42zhg7j6bcd2i1gp6nf6h6h7ikkmr0v0y"; depends=[curl httr]; }; pivotea = derive2 { name="pivotea"; version="1.0.1"; sha256="1lrxpvas2m3p25x8j9mjbvpnsz984i847knibfjpmhkwyd3ik86z"; depends=[dplyr magrittr purrr rlang tidyr]; }; pivottabler = derive2 { name="pivottabler"; version="1.5.5"; sha256="1kf9z2ashfvgjl0sviryx2r9b9k1k9j9b9nzivr1nxm0d9x9n3yn"; depends=[data_table dplyr htmltools htmlwidgets R6]; }; @@ -15439,24 +15690,25 @@ in with self; { pixelpuzzle = derive2 { name="pixelpuzzle"; version="1.0.1"; sha256="0z0afcjv9wpz5fw21vhv11jx2wrl4fy5nf9q5x5adwncsdmrqjhz"; depends=[beepr cli stringr]; }; pixels = derive2 { name="pixels"; version="0.1.1"; sha256="1vvahrajm8ys5vgfc0iyzj2a6vzvgaakkj6i0m2sy40l2w44dn0q"; depends=[htmlwidgets miniUI shiny]; }; pixiedust = derive2 { name="pixiedust"; version="0.9.4"; sha256="17gaahjzmjgqdkjqjpa7rh3wj1wx55v032ylijqaqklpfnbn7jkq"; depends=[broom checkmate htmltools knitr labelVector magrittr reshape2 scales]; }; - pixmap = derive2 { name="pixmap"; version="0.4-12"; sha256="1v1a1adsgh5jlvvi98j4nhb1h681s97ip76zdrga12rlsjaahfw9"; depends=[]; }; + pixmap = derive2 { name="pixmap"; version="0.4-13"; sha256="04g74v8g9r0f3czzk4r3n0wxyg7ldgfdlh21bas7axa9l10wdnz3"; depends=[]; }; pk4adi = derive2 { name="pk4adi"; version="0.1.3.2"; sha256="0iq34byjg5hvmg282z6ppjag5df0y0adij1d1zn32966c1mq9ad2"; depends=[data_table]; }; pkdata = derive2 { name="pkdata"; version="0.1.0"; sha256="1kmcalidw2zidd6i8ds0k057b3187by2k8z6764va43d5garbbcv"; depends=[lubridate]; }; + pkgGraphR = derive2 { name="pkgGraphR"; version="0.2.0"; sha256="0qmrbwgm6aclzdgpcwr2c2bvakh3rcrf9z8m5mqd9vxgjykjfgks"; depends=[DiagrammeR dplyr purrr]; }; pkgKitten = derive2 { name="pkgKitten"; version="0.2.3"; sha256="10q0sa6l4phi04d7a2pdiy5pykg9y4c8sp3hhg6g19jbldvyhx2w"; depends=[]; }; pkgbuild = derive2 { name="pkgbuild"; version="1.4.4"; sha256="1a72s2gg7ddjj94naiii44f3vyhky05gaa6xvdf72m1nshy88wjr"; depends=[callr cli desc processx R6]; }; - pkgcache = derive2 { name="pkgcache"; version="2.2.1"; sha256="04g74p50dd2108jc7xll3glk0y4p3ciib8qa11956zfkj4h1bj9x"; depends=[callr cli curl filelock jsonlite processx R6]; }; + pkgcache = derive2 { name="pkgcache"; version="2.2.2"; sha256="1qsvgdhinrz2mb4fr33pp6rm23pra6bgwzc70kjyl983zk2nrgby"; depends=[callr cli curl filelock jsonlite processx R6]; }; pkgcond = derive2 { name="pkgcond"; version="0.1.1"; sha256="03a4blq3niw1mljzylamvmr3l43czqlww4i6n7zb0dlym9x8gs1w"; depends=[assertthat]; }; pkgconfig = derive2 { name="pkgconfig"; version="2.0.3"; sha256="0l1qph8zyi2sic3k2qcd7vlfl7rzfh1q7z7zvjkl5f7y1x2fy3rk"; depends=[]; }; pkgdepR = derive2 { name="pkgdepR"; version="1.0.0"; sha256="098fcj1s5rcjxmn57449f4zk9z2w4mqwxkvxxjazd1nj7wa45z8p"; depends=[dplyr magrittr scales viridisLite visNetwork]; }; pkgdepends = derive2 { name="pkgdepends"; version="0.7.2"; sha256="09nddbcz0z5lh6aaspjvfvbp74na7693a5w3hq36p4ah2b824zmi"; depends=[callr cli curl desc filelock jsonlite lpSolve pkgbuild pkgcache processx ps R6 zip]; }; - pkgdown = derive2 { name="pkgdown"; version="2.0.7"; sha256="0sim3fwayf4mpxqi8y9v7clnkzs56amhxsc75lc1k0zskn374f7k"; depends=[bslib callr cli desc digest downlit fs httr jsonlite magrittr memoise purrr ragg rlang rmarkdown tibble whisker withr xml2 yaml]; }; + pkgdown = derive2 { name="pkgdown"; version="2.0.9"; sha256="186xzilh4079a6xjig3j4pdn99ipg4d5s5q1k75qclivq0b24m3f"; depends=[bslib callr cli desc digest downlit fs httr jsonlite magrittr memoise purrr ragg rlang rmarkdown tibble whisker withr xml2 yaml]; }; pkgfilecache = derive2 { name="pkgfilecache"; version="0.1.5"; sha256="0nzikz51444s6fpr3yvzshs2wv4nja6v0a44i791i4djm1qkyibb"; depends=[curl downloader rappdirs]; }; pkggraph = derive2 { name="pkggraph"; version="0.2.3"; sha256="1isiywgm20rypc5qr03p0k7lis76zzd96x5ncbvia644d2n13brm"; depends=[curl data_table dplyr ggnetwork ggplot2 htmltools igraph intergraph Matrix network networkD3 plyr RColorBrewer tibble]; }; pkglite = derive2 { name="pkglite"; version="0.2.2"; sha256="1781gkzz5p1rbksyxaznqp7n0ixig8lzjg88bj3v24r0zg5wwdwc"; depends=[crayon magrittr remotes]; }; pkgload = derive2 { name="pkgload"; version="1.3.4"; sha256="1ki6k7l7dpb6bncvvcndrv5764jb1adrzs5iaxicakfsija4pc30"; depends=[cli crayon desc fs glue pkgbuild rlang rprojroot withr]; }; pkgmaker = derive2 { name="pkgmaker"; version="0.32.10"; sha256="0cr95vmsb4gkl917wg4wwq8jihvwasdg18qzhk2cq224lrrh8awp"; depends=[assertthat codetools digest registry stringr withr xtable]; }; pkgndep = derive2 { name="pkgndep"; version="1.99.3"; sha256="1llpizr2wkhfgygr9fd79qxym0xcrxfvz8w5n0kwvkvlq3iqid44"; depends=[BiocManager BiocVersion brew ComplexHeatmap GetoptLong GlobalOptions hash]; }; - pkgnet = derive2 { name="pkgnet"; version="0.4.2"; sha256="0y1b5psn680agsnyiy8yr5m5pzb1y6wsa7gms43nwgj6jjmmvgvv"; depends=[assertthat covr data_table DT futile_logger glue igraph knitr magrittr R6 rlang rmarkdown visNetwork]; }; + pkgnet = derive2 { name="pkgnet"; version="0.5.0"; sha256="10sjvd3mwwlbj71zmdmczyrx5s95zax0w7m07nr6413c96ahny14"; depends=[assertthat covr data_table DT futile_logger glue igraph knitr magrittr R6 rlang rmarkdown visNetwork]; }; pkgnews = derive2 { name="pkgnews"; version="0.0.2"; sha256="0kqyy1fchpcyclxh6gly23pkfcf5b3hpsq1bhj4ykzbl4bc002h2"; depends=[]; }; pkgsearch = derive2 { name="pkgsearch"; version="3.1.3"; sha256="0b4w6sk65r77sfkvnyirxk0mpikqladi14pmc9sqhfcjbwvqgjx7"; depends=[curl jsonlite]; }; pkgverse = derive2 { name="pkgverse"; version="0.0.1"; sha256="0lsv7s9vsjvfpy19nxbdlbm363j01wwqqnrp0nlrik590hfq4w83"; depends=[devtools usethis]; }; @@ -15470,20 +15722,21 @@ in with self; { plan = derive2 { name="plan"; version="0.4-5"; sha256="0p81pzysbl58580393hw90w5svqiva9yvcwlmx247fld83lbh9qq"; depends=[]; }; planets = derive2 { name="planets"; version="0.1.0"; sha256="01zh7lgaykr9p186yy0vksn2pmc69b3xxh78w7z6wclvqjb7zh1p"; depends=[]; }; planningML = derive2 { name="planningML"; version="1.0.1"; sha256="1s9lf43kkiciqkrcyq9icxdqfs8a1za60pwpbxnrdsa7gzf76i29"; depends=[caret dplyr glmnet lubridate Matrix MESS pROC]; }; - planr = derive2 { name="planr"; version="0.3.0"; sha256="0v2lb7py5wmdcq6xqv4yaqqh0zncxv9hmcfw7k87zlygqnqx6xzk"; depends=[dplyr lubridate magrittr RcppRoll]; }; + planr = derive2 { name="planr"; version="0.4.1"; sha256="0qk8m235qja26g02rkg4sla6998mswqsy3hjwq39zdsmh88zy6bi"; depends=[dplyr lubridate magrittr RcppRoll tidyr]; }; planscorer = derive2 { name="planscorer"; version="0.0.1"; sha256="0jyjbi36bn6biw6h99w6s8zx7wllx5argfhhx8lqq5wmh9vb8vl1"; depends=[cli curl dplyr fs httr2 jsonlite purrr readr rlang sf stringr tibble tidyr]; }; plantTracker = derive2 { name="plantTracker"; version="1.1.0"; sha256="0qn07pb84j110zrml24gwb27za4wdxn0a4yfhc0c1174fipl6az1"; depends=[igraph Matrix sf units]; }; plantecophys = derive2 { name="plantecophys"; version="1.4-6"; sha256="1qf9a38n8nvvz8dvqra9mdsmkbkhxymjrin0wfis8g1ndf1f406c"; depends=[]; }; plantecowrap = derive2 { name="plantecowrap"; version="1.0.4"; sha256="0syxf63xy5whzw03ys5cxyw7689mr7ihgmqddv53jb8rlbwm84p8"; depends=[ggplot2 minpack_lm plantecophys tidyr]; }; + plantphysioR = derive2 { name="plantphysioR"; version="1.0.0"; sha256="15hp22b1h37dp0llbifz369rdaqzn0jl9dw07z4c4j0jnmr50h8h"; depends=[]; }; plaqr = derive2 { name="plaqr"; version="2.0"; sha256="15pdb57123m3cahvcsyrrvxjwxvs2f389yxip91gjxn68jf6cx1l"; depends=[quantreg]; }; - plasma = derive2 { name="plasma"; version="1.0.0"; sha256="0vxgs0vicpd39ynlnc1xpvimb4327njqlasm9xc5ccffbxnywg36"; depends=[beanplot oompaBase pls plsRcox Polychrome survival viridisLite]; }; + plasma = derive2 { name="plasma"; version="1.1.3"; sha256="02ygj3sjjds6iyh1d2jz8ifqc4m31zslplsmf88c8q8l67ilvrhl"; depends=[beanplot oompaBase pls plsRcox Polychrome survival viridisLite]; }; plasso = derive2 { name="plasso"; version="0.1.2"; sha256="09pc210wb98xnhm9wxsqvf217gysj9c2piwwhzxdp3lxb3my533x"; depends=[doParallel foreach glmnet iterators Matrix]; }; plater = derive2 { name="plater"; version="1.0.4"; sha256="0k2ha44ydcf180y44cgxd1haq55k96df39lahs6fji04imh75fii"; depends=[dplyr rlang]; }; platetools = derive2 { name="platetools"; version="0.1.7"; sha256="1y4ih36y8z32pqd3cjz2qwysg4c8d6lqdgdb0pixi4i3nxsxq85b"; depends=[ggplot2 RColorBrewer]; }; platowork = derive2 { name="platowork"; version="0.0.1"; sha256="09ps20lqli50nhhd3368fwf8cjsbshn428fbbbckbxnynxk5cwsy"; depends=[]; }; plattice = derive2 { name="plattice"; version="1.0"; sha256="00kc0ymrdr0glxzix1hrwn2vxnkzvq6ji4hkd1fjp5p2fws9ymfq"; depends=[ggplot2]; }; play = derive2 { name="play"; version="0.1.3"; sha256="0ys8z84ap4v37ifz84q18dms5b0rqin6dvb6av0vl5rjpbgpvbhd"; depends=[dplyr forcats ggplot2 purrr stringr tibble tidyr worldfootballR]; }; - pldamixture = derive2 { name="pldamixture"; version="0.1.0"; sha256="14jvlfpgw687g6746wkz6x3inqnmghjd692z5qddlxxw1fc9qp7j"; depends=[survival]; }; + pldamixture = derive2 { name="pldamixture"; version="0.1.1"; sha256="0gqk17n8vrbfxzyqfmxyw53dh7dakcgyhgg27k5mcby6mkc42yhb"; depends=[survival]; }; plde = derive2 { name="plde"; version="0.1.2"; sha256="1g1b1sgyfxgfkjcr3sdkan8jd6r7yyi0izc83vyj11bdk08jx22h"; depends=[]; }; pleLMA = derive2 { name="pleLMA"; version="0.2.1"; sha256="1n6q4x8qv00j0hikzzr600xgikhr462zm73zllb9n0valhmzy18z"; depends=[dfidx mlogit]; }; pleio = derive2 { name="pleio"; version="1.9"; sha256="1p2fksf026wv8cr6scdg9pclzrbamjf9nl1s0bpr7wrggjw67n0q"; depends=[Matrix rms]; }; @@ -15496,7 +15749,7 @@ in with self; { plink = derive2 { name="plink"; version="1.5-1"; sha256="0rn2i9i8af9aq0xgxhpcdchs2952lq2d2sg8x3js0zi3vcml76k0"; depends=[lattice MASS statmod]; }; plinkFile = derive2 { name="plinkFile"; version="0.2.1"; sha256="1vbhgwb08bbq4pmagrrn6zl1aw5cqcnfvicajj5c4y5qjm6y7s0m"; depends=[]; }; plinkQC = derive2 { name="plinkQC"; version="0.3.4"; sha256="0l5gf7wf33fhzby0n2qzph02v7an2gj2dji1i129hxsxqnynx7dy"; depends=[cowplot data_table dplyr ggforce ggplot2 ggrepel igraph optparse R_utils sys UpSetR]; }; - plm = derive2 { name="plm"; version="2.6-3"; sha256="00scwxk8aw9s85ls3igspd7rk2jz3lk4irrgmy2crhpcbf3hpays"; depends=[bdsmatrix collapse Formula lattice lmtest MASS maxLik nlme Rdpack sandwich zoo]; }; + plm = derive2 { name="plm"; version="2.6-4"; sha256="0xpd6r75g2mc9dsf8ckafbd3pjyrvlyrh12izj9yaqfw4v0vr9fx"; depends=[bdsmatrix collapse Formula lattice lmtest MASS maxLik nlme Rdpack sandwich zoo]; }; pln = derive2 { name="pln"; version="0.2-2"; sha256="03jjmfr1dwz6p652y917g9rv2alyam9ws6xh9ig02d3w78b0rsv9"; depends=[]; }; plnr = derive2 { name="plnr"; version="2022.11.23"; sha256="1qi24zpvclamxxfppgll7rcmq7fysxf8chk6wlkwkzmjl5c3cs4n"; depends=[data_table digest foreach fs glue purrr R6 usethis uuid]; }; plogr = derive2 { name="plogr"; version="0.2.0"; sha256="0a8dhzlna79ggyhfr0nncgh15a9n6r0dsz664pz0ah323wpblqqf"; depends=[]; }; @@ -15513,6 +15766,7 @@ in with self; { plotROC = derive2 { name="plotROC"; version="2.3.1"; sha256="15jvn1dlx8qh5ghnkhqyc49frw6rp58ikpjs3ga8mjxrqyz7wb1g"; depends=[ggplot2 gridSVG plyr rlang shiny]; }; plotSEMM = derive2 { name="plotSEMM"; version="2.4"; sha256="0fircrayhz92zvkigkyb1zpn07bvssqs1ip15p926zj3rl77fqgy"; depends=[MplusAutomation plotrix plyr Rcpp shiny]; }; plotbb = derive2 { name="plotbb"; version="0.0.6"; sha256="0vyp558i0gvr9r3xldkd4ldkd6wx95w7xkkas8cyw0s7i13qqq60"; depends=[magrittr rlang scales]; }; + plotcli = derive2 { name="plotcli"; version="0.1.0"; sha256="0qk78gagn5i6zs4srr3q2kzhi5vlyxhmxgwg2ah9c24asnfa3hyg"; depends=[crayon ggplot2 knitr R6 rlang rmarkdown stringr]; }; plotdap = derive2 { name="plotdap"; version="1.0.3"; sha256="151vaz61ycm95sazbn7d03wr7hcmvcmbz12rjls334lp38735954"; depends=[cmocean dplyr gganimate ggnewscale ggplot2 lazyeval lubridate magrittr mapdata maps raster rerddap scales sf tidyr viridis]; }; plotfunctions = derive2 { name="plotfunctions"; version="1.4"; sha256="0asmxw8283fpvl83h478j5nyg59xqifqaa8f2f6l199gvvswhhg2"; depends=[]; }; plothelper = derive2 { name="plothelper"; version="0.1.9"; sha256="1ibznjqs4gpbq1vx79gg0fkm842xfqgpmmgqji2m6s712j3bdn5k"; depends=[farver ggfittext ggplot2 gridExtra magick plyr scales]; }; @@ -15531,26 +15785,28 @@ in with self; { plsRbeta = derive2 { name="plsRbeta"; version="0.3.0"; sha256="0xikaxg1n298j8mm4vzzn7bfma1lmhak39aawfhp3ny3j1d8llr4"; depends=[betareg boot Formula MASS mvtnorm plsRglm]; }; plsRcox = derive2 { name="plsRcox"; version="1.7.7"; sha256="1fkbynjlwi070yshnqcmw2f331yzr61f1mvm5dbw3iwg9ldhcbwr"; depends=[kernlab lars mixOmics pls plsRglm risksetROC rms survAUC survcomp survival]; }; plsRglm = derive2 { name="plsRglm"; version="1.5.1"; sha256="1xpf4rz4midrl62yn39bq4ax5yl8h18kcyv2ckxis888yv5b1bqr"; depends=[bipartite boot car MASS mvtnorm]; }; - plsVarSel = derive2 { name="plsVarSel"; version="0.9.10"; sha256="0aqg4vw16s80ajss8pjlmm9n2650srqi1v8rr7hz1mjpvzc9626g"; depends=[bdsmatrix genalg MASS MSQC mvtnorm pls praznik progress]; }; + plsVarSel = derive2 { name="plsVarSel"; version="0.9.12"; sha256="0130hqnjwgm2l7sacxh5m98gm35qxgqwylbk42jnlp03azwqdbax"; depends=[bdsmatrix genalg MASS mvtnorm pls praznik progress]; }; plsdepot = derive2 { name="plsdepot"; version="0.2.0"; sha256="0n2idfkgisbr6b04dcv47yy5f7j1ndxs53p5hinpghg8ikncbvwf"; depends=[]; }; plsdof = derive2 { name="plsdof"; version="0.3-2"; sha256="1bqk98f9zyi4hvna1sfx4fwiivndlwanjaphlqa03bg6bghcj60p"; depends=[MASS]; }; - plsgenomics = derive2 { name="plsgenomics"; version="1.5-2.1"; sha256="1cn7ljq3nmvcm5g0ifhghm52sl25fyfalp7v7r8bl4iq9vblj2wa"; depends=[boot fields MASS plyr reshape2 RhpcBLASctl]; }; + plsgenomics = derive2 { name="plsgenomics"; version="1.5-3"; sha256="0a1vzpbjd0lyj9vzx6fav4swiv89f3aj8i82g4yj0vd83vwakrnr"; depends=[boot fields MASS plyr reshape2 RhpcBLASctl]; }; + plsmmLasso = derive2 { name="plsmmLasso"; version="1.1.0"; sha256="0xdpscm6villr4fby19jvg60y3mc81bcj6hwavrbmnbp02b4lhcj"; depends=[dplyr ggplot2 glmnet hdi MASS mvtnorm rlang scalreg]; }; plsmod = derive2 { name="plsmod"; version="1.0.0"; sha256="1fyv2v3jmf1hdii9z477ijy5d9gvpc3jg9cyl9lbplgc18l2pd2b"; depends=[dplyr generics magrittr mixOmics parsnip purrr rlang tibble tidyr]; }; plsmselect = derive2 { name="plsmselect"; version="0.2.0"; sha256="044mwdqv5vw0apmx3yhn6xkdmw6baalvb8c6hhmawcs279kwi1m9"; depends=[dplyr glmnet mgcv survival]; }; plspm = derive2 { name="plspm"; version="0.5.1"; sha256="00kbyi5qqm51wsli3h8kfshjs99wa602rbmi1jss65vw3p1jhsqs"; depends=[amap diagram shape tester turner]; }; pltesim = derive2 { name="pltesim"; version="1.0"; sha256="0mvqp8di2gwhd9wc9kvnnpxd3hkr9b9lj6g5qlkqcbrgkq6fjahs"; depends=[coreSim ggplot2]; }; plu = derive2 { name="plu"; version="0.3.0"; sha256="0s4k5vqgwbw7ayjhs2j8w9az7pn8km5hykkic1ii4jpdiy03c23g"; depends=[lifecycle]; }; plugdensity = derive2 { name="plugdensity"; version="0.8-5"; sha256="1gxjr6984p4awps5syzknzjyhpnjzqshv9c3cdx4xbkp1ax3xrw9"; depends=[]; }; - plumber = derive2 { name="plumber"; version="1.2.1"; sha256="1k0y7ylc8bld16imn86g0i0dmxmr3kmh9ax4ys0yrxqzrvji7z3g"; depends=[crayon ellipsis httpuv jsonlite lifecycle magrittr mime promises R6 rlang sodium stringi swagger webutils]; }; + plumber = derive2 { name="plumber"; version="1.2.2"; sha256="1ycq3kjkrlx66h05g5ncvmq2cr051609xs4bzs8n49c70h6p0bpr"; depends=[crayon ellipsis httpuv jsonlite lifecycle magrittr mime promises R6 rlang sodium stringi swagger webutils]; }; plumberDeploy = derive2 { name="plumberDeploy"; version="0.2.1"; sha256="0icl35wck94scjyqw6di2sl6fq7zlvd8hm13fw79iqr0wyrich0r"; depends=[analogsea jsonlite lifecycle ssh]; }; plumbertableau = derive2 { name="plumbertableau"; version="0.1.1"; sha256="1r4a7c5zagqm2qiyj2k8ywal0dg5kfx17ckkv1ks8wqzkpgr3c07"; depends=[curl debugme htmltools httpuv httr jsonlite knitr later magrittr markdown plumber promises rlang stringi urltools]; }; plumbr = derive2 { name="plumbr"; version="0.6.10"; sha256="1ncrqg8j4baqrjkd95fkdanaylwl1ygdr7xzc891gig3rknx0n1i"; depends=[objectSignals]; }; - plume = derive2 { name="plume"; version="0.2.3"; sha256="0vrrx7jw75xqplcm1mjsxqbd4fvys8sm6r53n691kx56xcp79m0p"; depends=[dplyr glue jsonlite knitr lifecycle purrr R6 readr rlang stringr tibble tidyr tidyselect vctrs yaml]; }; + plume = derive2 { name="plume"; version="0.2.4"; sha256="00czlz71wwj77kxppxrfvsgi23g71h5r4xbdsadqjr8jidcplhch"; depends=[dplyr glue jsonlite knitr lifecycle purrr R6 readr rlang stringr tibble tidyr tidyselect vctrs yaml]; }; + plusCode2 = derive2 { name="plusCode2"; version="0.1.0"; sha256="0kslqzngb5y8d5x7gc1kja345f69c7azilwzcspv127k00mg4n3k"; depends=[sf]; }; pluscode = derive2 { name="pluscode"; version="0.1.0"; sha256="1j9yr5j6mb346a5dn7v9bsppgnxdj1ryimlla4a08rv7bjyq5i6q"; depends=[httr jsonlite]; }; plutor = derive2 { name="plutor"; version="0.1.0"; sha256="09wwv47rigjl61q2c7bhq5qa2gghklzia5pqm4vwp66v3j7nb1pn"; depends=[baizer cli dplyr ggh4x ggplot2 ggsci magrittr purrr RColorBrewer repr rlang scales stringr tibble tidyr]; }; plyr = derive2 { name="plyr"; version="1.8.9"; sha256="00z1mvqisnzbbwcwax1gm9ilahpgp21kk4l7hqdz8fym27vygd8m"; depends=[Rcpp]; }; pm3 = derive2 { name="pm3"; version="0.1.9"; sha256="03q36qmq9hvkws5v79c39z698fjgfpyfxz5nx7g8diy6sj834mw6"; depends=[tableone]; }; - pmartR = derive2 { name="pmartR"; version="2.4.4"; sha256="1ns65iglnz9kpc14jnwb6z7jn0drlqnqblg8ibf4y405kv7mw3zy"; depends=[BH data_table doParallel dplyr e1071 foreach ggplot2 glmpca magrittr mvtnorm parallelly patchwork pcaMethods purrr RColorBrewer Rcpp RcppArmadillo rrcov stringr tidyr]; }; + pmartR = derive2 { name="pmartR"; version="2.4.5"; sha256="07996a2xs3rwxaa8dw53pm07n2052lq223prqd4lbf8ijy3za765"; depends=[BH data_table doParallel dplyr e1071 foreach ggplot2 glmpca magrittr mvtnorm parallelly patchwork pcaMethods purrr RColorBrewer Rcpp RcppArmadillo rrcov stringr tidyr]; }; pmc = derive2 { name="pmc"; version="1.0.6"; sha256="1j2qiabq2qd4i8y28s87k0jxbbvv2yhjxmxsvvh9i8gzar17p5g7"; depends=[dplyr geiger ggplot2 ouch phytools tidyr]; }; pmcalibration = derive2 { name="pmcalibration"; version="0.1.0"; sha256="1zhg55jdf8jd92216waa2g18mvni8qh6j2idgf77k6mcwb63m9zw"; depends=[checkmate chk Hmisc MASS mgcv pbapply survival]; }; pmclust = derive2 { name="pmclust"; version="0.2-1"; sha256="0wldf0bj406qxmlc7hsbamiak7qcwf8ixng9dfkswh511m3p05jd"; depends=[MASS pbdMPI]; }; @@ -15568,7 +15824,8 @@ in with self; { pmvalsampsize = derive2 { name="pmvalsampsize"; version="0.1.0"; sha256="1wrdid3rcl7h7sdgm2gxkmcb4vdzg0krkmb09bh50y7nnrq70i22"; depends=[pROC]; }; pmwg = derive2 { name="pmwg"; version="0.2.7"; sha256="17q2w48bgk7m4jp5567ig0gvvcz14rswf36q8561ykd0kyaxq2vj"; depends=[checkmate coda condMVNorm MASS mvtnorm]; }; pmxTools = derive2 { name="pmxTools"; version="1.3"; sha256="1is56is0xg9syfwma90wqp7rxbgcv36qcpmcxnz0dlf7ypnvqsak"; depends=[chron data_tree dplyr ggdist gghalves ggplot2 magrittr MASS patchwork PKNCA scales stringr tibble xml2]; }; - pmxcode = derive2 { name="pmxcode"; version="0.1.2"; sha256="0qa0g3fz2dqccpf059m5jygicvl6a7qcmjn9dq0afv16y6w9074a"; depends=[bsicons bslib config dplyr glue golem htmltools htmlwidgets jsonlite magrittr markdown pillar rclipboard readr rhandsontable rlang shiny shinyAce shinyBS shinyFiles tidyr xfun]; }; + pmxcode = derive2 { name="pmxcode"; version="0.1.3"; sha256="1zh8461zxdrp6xf7795ivgjhhjvnlyhkif8cqmijnjjylvami09g"; depends=[bsicons bslib config dplyr glue golem htmltools htmlwidgets jsonlite magrittr markdown pillar rclipboard readr rhandsontable rlang shiny shinyAce shinyBS shinyFiles tidyr xfun]; }; + pmxcv = derive2 { name="pmxcv"; version="0.0.1.0"; sha256="0x74pjmj9335bnh2zbhidxwzq28f4a9281dhgnkbyllfq2kw2dsc"; depends=[]; }; pmxpartab = derive2 { name="pmxpartab"; version="0.5.0"; sha256="13r4xy0jvxdwjz3gic67fzgq87v18vs7df1ggd3hq89h6f28fxar"; depends=[data_table htmltools knitr table1]; }; png = derive2 { name="png"; version="0.1-8"; sha256="077nca3x0l6mq2g6izknzcn994bqs3nfqk7wscrjbfk2dnxzldjs"; depends=[]; }; poLCA = derive2 { name="poLCA"; version="1.6.0.1"; sha256="05kbkyrds430v729hi56q48yfwfi5m1f371gpb4h417z5fj6137d"; depends=[MASS scatterplot3d]; }; @@ -15579,7 +15836,7 @@ in with self; { poibin = derive2 { name="poibin"; version="1.5"; sha256="1sxryvwwz6ldsnkzdy56p8c895s5yvpcai9ndyjv1x5q3l05wf9v"; depends=[]; }; poilog = derive2 { name="poilog"; version="0.4.2"; sha256="0dk2c65b7aac2ak3ajgh3wa2jhqyfv1qp90flw8xcx3f5w5gyv7s"; depends=[]; }; pointRes = derive2 { name="pointRes"; version="2.0.2"; sha256="1a3yj94rg16fbc47ahwdq17i8pganm6vg6xfl3b0glybw5f2hpkj"; depends=[DescTools dplR ggplot2 plyr TripleR]; }; - pointblank = derive2 { name="pointblank"; version="0.12.0"; sha256="0ysd78ad00a08knw5lmd09rq7sr41p8grfq5f7f2xr487q67mzgk"; depends=[base64enc blastula cli DBI dbplyr digest dplyr fs glue gt htmltools knitr magrittr rlang scales testthat tibble tidyr tidyselect yaml]; }; + pointblank = derive2 { name="pointblank"; version="0.12.1"; sha256="1wwb9ncji7450rbbmrh9mznl4pnpmxq8ibx785bz9dsswdglzfhq"; depends=[base64enc blastula cli DBI dbplyr digest dplyr fs glue gt htmltools knitr magrittr rlang scales testthat tibble tidyr tidyselect yaml]; }; pointdensityP = derive2 { name="pointdensityP"; version="0.3.5"; sha256="0n7p3b77m47avbr7n85knf31m9rlp43mdl3748ysj6wvxvhnivx4"; depends=[data_table]; }; pointr = derive2 { name="pointr"; version="0.2.0"; sha256="1qfxcyzi2sa49x00hidz054njj9mm7gkhv99faafb9x4gp3pcq0v"; depends=[stringr]; }; poisDoubleSamp = derive2 { name="poisDoubleSamp"; version="1.1.1"; sha256="0s0x3x3f620752ggai0jlkgrg1mh53giyh92q2lpwyvawyg8nyav"; depends=[Rcpp]; }; @@ -15587,25 +15844,24 @@ in with self; { poisbinom = derive2 { name="poisbinom"; version="1.0.1"; sha256="0mjxg0s3nck7qrmq4bbrhwxfwr6fqml54s9k8q1mkfzlifa7qyf7"; depends=[Rcpp]; }; poismf = derive2 { name="poismf"; version="0.4.0-4"; sha256="1pl0vxrczknfrxx70wc6wy0hjxzdk7jip9was5saxby3b5as2bhp"; depends=[Matrix]; }; poisson_glm_mix = derive2 { name="poisson.glm.mix"; version="1.4"; sha256="02mnrrynlmcbcywmgm829kajlixwr91aj49d43pkfc3yxcnj815w"; depends=[]; }; - poissonMT = derive2 { name="poissonMT"; version="0.3-5"; sha256="14qkc8qz3423b13gp6gsp8cbb1nv9wwjjfa4i9zc15qy5i99ha26"; depends=[checkmate MASS robcbi robustbase]; }; poissonreg = derive2 { name="poissonreg"; version="1.0.1"; sha256="1hlp6lvag9a3yv1iapcs3r14w6y5pqdb0zwlhjw88g72amwp7g43"; depends=[dplyr generics glue parsnip purrr rlang tibble tidyr]; }; poistweedie = derive2 { name="poistweedie"; version="1.0.2"; sha256="0afr2rzn1bdbfk2ayzrxp62zwghlpml4lvhv7kixkk8a4raxv4h3"; depends=[]; }; pokemon = derive2 { name="pokemon"; version="0.1.3"; sha256="13j0a893w803brmwsa98x04mmz35l2vmlj1i86m0qxbjb4ysnkbb"; depends=[]; }; polaroid = derive2 { name="polaroid"; version="0.1.0"; sha256="11i1xxvj3ik8kjpm8q1ind3qkwrgyhv0sdcynwj4wld2n6i1v2v5"; depends=[shiny]; }; - policytree = derive2 { name="policytree"; version="1.2.2"; sha256="1xkki4x9s5h4261rdjnafaxwz7baa8pv8gzysbb3cy1gjm52sq4r"; depends=[BH grf Rcpp]; }; + policytree = derive2 { name="policytree"; version="1.2.3"; sha256="1a0yqg754gb793k9zrhp2zb1j5lw1kv1ziv9dr7rk2zmzgs1k5pb"; depends=[BH grf Rcpp]; }; polimetrics = derive2 { name="polimetrics"; version="1.2.1.14"; sha256="0zzqzcfmvb6a9lav5sdgzhx4637r068q3kyjqk1ykdjg2d7s7lrv"; depends=[car dplyr formula_tools ggplot2 gplots MASS purrr rlang rstatix stringr tidyverse]; }; poliscidata = derive2 { name="poliscidata"; version="2.3.0"; sha256="1ywfhksc6gcc2xk5lp6s8nn4wib92sv7p3wq92dzabf75q6mscix"; depends=[abind car descr gplots Hmisc plotrix plyr survey weights xtable]; }; polished = derive2 { name="polished"; version="0.8.1"; sha256="0qn7zlxw7jr0apvn23a6x00xn5fbg2c2hg6713biwsi7iqhb0amc"; depends=[automagic desc digest dplyr DT htmltools httr jose jsonlite lubridate otp purrr rlang rmarkdown shiny shinycssloaders shinydashboard shinyFeedback shinyjs shinyWidgets stringr tibble tidyr uuid yaml]; }; polite = derive2 { name="polite"; version="0.1.3"; sha256="0k0zqmm1zd0kgmqns41gxfa8pak1k11c3zbvsr0xbqc6x1bc5xyj"; depends=[httr magrittr memoise ratelimitr robotstxt rvest usethis]; }; politeness = derive2 { name="politeness"; version="0.9.3"; sha256="1p3d7xyyx79cq3w5qg49fc25i7v2qhfqsr938jmrnvrx5ds42i40"; depends=[data_table ggplot2 glmnet quanteda spacyr stringi stringr textir tm]; }; politicsR = derive2 { name="politicsR"; version="0.1.0"; sha256="1msf394i70g9k2lcfmp0drq8qm138wdhbf9qaa5342z4wcasmvdv"; depends=[ineq]; }; - polle = derive2 { name="polle"; version="1.3"; sha256="1b8hbps8nmvvb8hbcd8y6zs5wc18p9rw878s4nf9q31zi3k33h56"; depends=[data_table DynTxRegime future_apply lava policytree progressr SuperLearner survival targeted]; }; + polle = derive2 { name="polle"; version="1.4"; sha256="11n2g4gbwvcgw49pfr7qgbfidfwliqkag3n6wxcinl44b2l6jjfi"; depends=[data_table DynTxRegime future_apply lava policytree progressr SuperLearner survival targeted]; }; pollen = derive2 { name="pollen"; version="0.82.0"; sha256="0vmggbvacpbdz4zvn3cinip1b0ac44vgbydmsk6698hwgx9iwmfp"; depends=[dplyr lubridate purrr]; }; pollimetry = derive2 { name="pollimetry"; version="1.0.1"; sha256="09zmcwlgzl4fnkdg2m424ibv3izzrm595c7pi4mc3bd1g8sa2ypn"; depends=[brms repmis]; }; pollster = derive2 { name="pollster"; version="0.1.6"; sha256="0zjyy36mapg1c3fj8cav43f1x1aqg3ysf74fgsiiwqwjhdm08hpx"; depends=[dplyr forcats labelled rlang stringr tidyr]; }; polmineR = derive2 { name="polmineR"; version="0.8.9"; sha256="0cxjy3w4k52kdjf66yysvd1yd96rv5xrzqjrkdvl4wrhxvla3202"; depends=[cli data_table DT fs jsonlite knitr lifecycle magrittr Matrix pbapply RcppCWB rlang slam stringi tm xml2]; }; - polspline = derive2 { name="polspline"; version="1.1.24"; sha256="0mal78f79jl6cj02xabv9vqf88m4iiadmgiv3qliv117cxkc6hb6"; depends=[]; }; - polyCub = derive2 { name="polyCub"; version="0.9.0"; sha256="0rdcb0jdfjxj09vrhsgf7jy65fffldi2dp32gh04c0mhbi38bhx9"; depends=[sp]; }; + polspline = derive2 { name="polspline"; version="1.1.25"; sha256="18wv3v76y4xdlrz7qdp6amr0ynhyqbja1rjqmbz0lc12v56gqhr9"; depends=[]; }; + polyCub = derive2 { name="polyCub"; version="0.9.1"; sha256="14hifd0ixppy3bg49y4kpjgvwhvz6nj43nh37hgwsy5qdifayzq7"; depends=[sp]; }; polyMatrix = derive2 { name="polyMatrix"; version="0.9.16"; sha256="13amrjl0nsyz6d9c9xxgnlkhdiicy8rx27ds5k47r8x48386vz14"; depends=[Matrix polynom]; }; polyRAD = derive2 { name="polyRAD"; version="2.0.0"; sha256="12qlws0d6s94rand1a7azd7yv22qzij1aqmhrvw4az0y7jy2wka4"; depends=[fastmatch pcaMethods Rcpp stringi]; }; polySegratio = derive2 { name="polySegratio"; version="0.2-5"; sha256="0djw49mbhd7x6jr0f5qkb9akw3fw3ax4w9xv8iwa5f65q5gbxpdf"; depends=[gdata]; }; @@ -15614,10 +15870,10 @@ in with self; { polyapost = derive2 { name="polyapost"; version="1.7"; sha256="1inq3b8qq17w5zx2lrkrxjzb7drfajsp4qgy0194971m6x2j4cfx"; depends=[boot rcdd]; }; polyclip = derive2 { name="polyclip"; version="1.10-6"; sha256="0qwb5w1ishbhg1nhdp8985ddvcs7ljdyrbv059hx576xmgni6brw"; depends=[]; }; polycor = derive2 { name="polycor"; version="0.8-1"; sha256="0285rvx8238qp8dix0jq0cqq7ks8h6cjwsscbc7dx4n9nph56pzh"; depends=[admisc Matrix mvtnorm]; }; - polyglotr = derive2 { name="polyglotr"; version="1.4.0"; sha256="0s4lb934il8h49gnjicw5iq00x7x62shiyl1rbxs0b6fc4qn2hip"; depends=[dplyr httr jsonlite magrittr purrr RCurl rlang rvest stringr tibble urltools]; }; + polyglotr = derive2 { name="polyglotr"; version="1.5.0"; sha256="0v3ada7279i619gv5r92xnyhjgb3qyydq88b5w7mj58al1wni6cg"; depends=[dplyr httr jsonlite magrittr purrr RCurl rlang rvest stringr tibble urltools]; }; polyhedralCubature = derive2 { name="polyhedralCubature"; version="1.1.0"; sha256="1la8cj261c4vshr4yd3vgplzv1ykrkgvlwrjm49fgzh142rk59gc"; depends=[gmp magrittr Matrix ompr qspray rcdd SimplicialCubature spray tessellation]; }; polylabelr = derive2 { name="polylabelr"; version="0.2.0"; sha256="01b2v0l5g8nxwbd6nwqv8ahypgh6gfhd4qabg75brlj7z1iyfzf2"; depends=[Rcpp]; }; - polymapR = derive2 { name="polymapR"; version="1.1.5"; sha256="0mc4gblzznd0md740bzrd3cpk5ikf3dms72iqq18g76yc2y8iy2r"; depends=[doParallel foreach igraph knitr MDSMap]; }; + polymapR = derive2 { name="polymapR"; version="1.1.6"; sha256="0aschby014m0j0nrr2q4pfghhakx89jq6wn8pv2dnbfpbg779l18"; depends=[doParallel foreach igraph knitr MDSMap]; }; polynom = derive2 { name="polynom"; version="1.4-1"; sha256="0y4j07syjwpnq5w6a1d90z6h1hjzijmm42pq0f8jk2vcn5xxn7mw"; depends=[]; }; polypharmacy = derive2 { name="polypharmacy"; version="1.0.0"; sha256="1rimhy7z5xglkxfp3yh4vqm5g075n8g09nl4a8nxxf6cyl504gcv"; depends=[data_table doParallel foreach itertools lubridate stringr]; }; polypoly = derive2 { name="polypoly"; version="0.0.3"; sha256="1xd5s2gj3x47dvq02lkjih6rbvmjh3hwybzwsvnq3dxvcj9jjkyw"; depends=[ggplot2 reshape2 rlang tibble]; }; @@ -15626,10 +15882,10 @@ in with self; { polysat = derive2 { name="polysat"; version="1.7-7"; sha256="0fpdy2yya91hz1n24j4mqiggrjjihddaia5p24phgbkw8rxqqp40"; depends=[Rcpp]; }; polywog = derive2 { name="polywog"; version="0.4-1"; sha256="02qk1cyvkd77mwlvhj1zzzi0bmy7qxz29j2v730wp7rz4w7h5x5n"; depends=[foreach Formula glmnet iterators Matrix miscTools ncvreg Rcpp stringr]; }; pomcheckr = derive2 { name="pomcheckr"; version="0.1.1"; sha256="0fm2v388ya7v4vrb5rvilghlf49d15jlwz0isf95ldr81a55m9ij"; depends=[assertthat dplyr ggplot2 magrittr rlang stringr tidyr]; }; - pomdp = derive2 { name="pomdp"; version="1.1.3"; sha256="0fw8phi09c7i301v5dankplnhx0i099npsdc9b2hfqif5ykhh7f2"; depends=[foreach igraph Matrix pomdpSolve processx Rcpp]; }; + pomdp = derive2 { name="pomdp"; version="1.2.3"; sha256="1l873a4p0fzfmgz52v57i2ccmpsrv10lvbrm7mr39qwqsaklh3bv"; depends=[foreach igraph Matrix pomdpSolve processx Rcpp]; }; pomdpSolve = derive2 { name="pomdpSolve"; version="1.0.4"; sha256="0ywiqry0df1cjy3k8r3rzpd42rmnn578ih03qvp8qydq66bdrh3b"; depends=[]; }; pomodoro = derive2 { name="pomodoro"; version="3.8.0"; sha256="1y7a6097jlrrgqkxhb43n5nahf4m814inhmkm1495w0k5q1zmraf"; depends=[caret gbm ipred pROC randomForest tibble]; }; - pomp = derive2 { name="pomp"; version="5.6"; sha256="0flpd1ayh39bfalvw3w3111z5ca79rp42znfskzdy5gfh4b4wcqc"; depends=[coda data_table deSolve digest mvtnorm]; }; + pomp = derive2 { name="pomp"; version="5.9"; sha256="1hhsv06vcqfzzb42nk0sidp9gd1larqrr3s6f5qh7hf1jv1b0d86"; depends=[coda data_table deSolve digest mvtnorm]; }; pompom = derive2 { name="pompom"; version="0.2.1"; sha256="09jy4lrb2p71yk604ndfhqfz6znlc3bq72k42f0d1i1a8g3by8h6"; depends=[ggplot2 lavaan qgraph reshape2]; }; pompp = derive2 { name="pompp"; version="0.1.3"; sha256="0svlzhsm1kfwgjpx2cas63jm8v5b9cxlksipv758vxlnc3jiarvk"; depends=[coda geoR Rcpp RcppEigen RcppProgress]; }; pooh = derive2 { name="pooh"; version="0.3-2"; sha256="0qwa5j91aypasvsf4xcfbl6lz7llawdr38jiflzmfak2ad72rv7j"; depends=[]; }; @@ -15644,12 +15900,12 @@ in with self; { pop = derive2 { name="pop"; version="0.1"; sha256="0hbxdrkasb69x7ipddvyrzl5vvc7dd6rzj1vy7v3chg3rzgq89cj"; depends=[igraph MASS]; }; pop_lion = derive2 { name="pop.lion"; version="1.0.1"; sha256="1rj95wwcxvsfd1smd21717y9c0672a8vnpnbdsa63pxbzdxc4kaj"; depends=[abind testthat]; }; pop_wolf = derive2 { name="pop.wolf"; version="1.0"; sha256="113l9skpggjxjpwxibfp611z2gnjikfqh6kmj6in52sn9q4yqv83"; depends=[abind]; }; - popEpi = derive2 { name="popEpi"; version="0.4.11"; sha256="0407vw95id6537q7kmaar0qbkdls6j9w7b2d8y957zrrd1wb43xg"; depends=[data_table Epi survival]; }; + popEpi = derive2 { name="popEpi"; version="0.4.12"; sha256="13fasp84hxxpbn6gmfjfl1kzija7y11mvlhc77rpqnj1l5wcm1rn"; depends=[data_table Epi survival]; }; popPCR = derive2 { name="popPCR"; version="0.1.1.1"; sha256="03ppgjmdp3rivlgqs7aq082j4rzndf9fw5aq8mzci7fvjkj7whc4"; depends=[mvtnorm]; }; popPyramid = derive2 { name="popPyramid"; version="0.1.1"; sha256="1fvq63d0pjhpzyf6pb2v5w9wy0pskiv2n07jipg98bgyiih1w584"; depends=[dplyr ggplot2 tibble]; }; popReconstruct = derive2 { name="popReconstruct"; version="1.0-6"; sha256="0nmf93dy2qf7z9mafpy99ry53aapbxlismn7drn732r8gvravapx"; depends=[coda]; }; popbayes = derive2 { name="popbayes"; version="1.2.0"; sha256="1qrxjk1y52rsf203nnylpksjv2hv3x8pk2flvjlwxj5fv5335a9y"; depends=[R2jags usethis]; }; - popbio = derive2 { name="popbio"; version="2.7"; sha256="02dbb2sinn1n8a9dg8lvf35sc8hb14c90mjymz2gk64xdysf0m2j"; depends=[]; }; + popbio = derive2 { name="popbio"; version="2.8"; sha256="0fpf13d0h5mmi1xrxfqgz1map8v6g388kcm901ajdnsf57awbqpg"; depends=[]; }; popdemo = derive2 { name="popdemo"; version="1.3-1"; sha256="0xvqp71spqh5khi2gdzxmj8pp71i6l2qpcgcw8s9xbqwx9w905mq"; depends=[expm MCMCpack]; }; popgenr = derive2 { name="popgenr"; version="0.2"; sha256="164dhizka0yadzihbjqkfs5p0hknw966mq0grigs7r9ppbq9kajh"; depends=[]; }; popkin = derive2 { name="popkin"; version="1.3.23"; sha256="07wlja7c96az0d82c3b0m1kmc04sbgp73asbaks26jwvjw4vmby5"; depends=[ape RColorBrewer]; }; @@ -15659,6 +15915,7 @@ in with self; { populR = derive2 { name="populR"; version="0.2.1"; sha256="1j0ip93pd5sq2rcqd0pw5c0nmi1pjjaxi5k4xk97kgwnqcq5ib7n"; depends=[dplyr Metrics osmdata rlang sf units usethis]; }; population = derive2 { name="population"; version="0.3"; sha256="00kagbz4pr4c5z6cb5w4y9nlbjzaa2awc45z2cvrivng76376br3"; depends=[abind]; }; populationPDXdesign = derive2 { name="populationPDXdesign"; version="1.0.3"; sha256="0p73ddv3j1s1vs4j3axnsf39n626qjv0w1qlq9p7km4s6729bhgv"; depends=[devtools ggplot2 plyr roxygen2 shiny shinycssloaders]; }; + poputils = derive2 { name="poputils"; version="0.3.1"; sha256="1bd9zb1kmzw1xfrslnp89iw2ilgxy5vv6r918dss76lwab9qja5c"; depends=[cli cpp11 rlang rvec tibble tidyselect vctrs]; }; porridge = derive2 { name="porridge"; version="0.3.3"; sha256="0zya6zv8rsmbwv330jmx2pz1cn97m359nb0a7cjiyjgbggygxryf"; depends=[MASS Matrix mvtnorm pracma Rcpp RcppArmadillo]; }; port4me = derive2 { name="port4me"; version="0.7.1"; sha256="1rvp9aj0m2dbkw03xl8sa4qvl20n5smik8dbq5cj0254rwcvmahd"; depends=[]; }; portalr = derive2 { name="portalr"; version="0.4.1"; sha256="1i241nn694nyyljldpsah1555spbhksassf7i18pmqigzpk01qix"; depends=[clipr clisymbols crayon dplyr forecast httr lubridate lunar magrittr rlang tidyr tidyselect zoo]; }; @@ -15695,13 +15952,13 @@ in with self; { powerCompRisk = derive2 { name="powerCompRisk"; version="1.0.1"; sha256="11xprjn9hzi8gxrsi7wivwgchg9h2apgxa63fp466ngjfy5ybxf4"; depends=[mvtnorm]; }; powerEQTL = derive2 { name="powerEQTL"; version="0.3.4"; sha256="124mwkjf5m19znn7zdnncdc3klgqyid08kvihk0gws2y9bw0m1zs"; depends=[GLMMadaptive nlme]; }; powerGWASinteraction = derive2 { name="powerGWASinteraction"; version="1.1.3"; sha256="1i8gfsk9qzx54yn661i4x9k7n7b6r1jd808wv1hcq7870mzyb27k"; depends=[mvtnorm pwr]; }; - powerLATE = derive2 { name="powerLATE"; version="0.1.1"; sha256="1dmvvh7ynvr8krl5p1qbg8ib1s595vqci2r80zmwsm28jhv8ka4w"; depends=[]; }; + powerLATE = derive2 { name="powerLATE"; version="0.1.2"; sha256="0bxwzskqc4f4f5nvzxd5dm2pd5524x68zdzhiqdp1fsfwb555rkd"; depends=[]; }; powerMediation = derive2 { name="powerMediation"; version="0.3.4"; sha256="08zszskhd21pbjamch5q7v7vx2p78c1d53zrp31hmpxk1ymx2xf3"; depends=[]; }; powerPLS = derive2 { name="powerPLS"; version="0.1.0"; sha256="03y06wnd8i3lkw5fakihgrb9karjfw496vfygqgl8b6fxb2nz2yw"; depends=[compositions foreach ks MASS mvtnorm nipals simukde]; }; powerSurvEpi = derive2 { name="powerSurvEpi"; version="0.1.3"; sha256="1p1fw4jq4rxc273hmycxf4bkqm6zmfw0jdy2s65jy10q37r53ial"; depends=[pracma survival]; }; powerbiR = derive2 { name="powerbiR"; version="0.1.0"; sha256="0b7409j55m5nnp5nm9sgij635xpm39qkm3hajg3x0x8zxvfczfz6"; depends=[AzureAuth data_table httr jsonlite]; }; powerbydesign = derive2 { name="powerbydesign"; version="1.0.5"; sha256="006m127rc49bshgljd5d3ii6sfx24ndn2690ixj0vnqm2dp3zjnw"; depends=[gdata ggplot2 lme4 MASS plyr reshape2 stringr]; }; - powerindexR = derive2 { name="powerindexR"; version="1.5"; sha256="1dj5mnwx1wbygxjn538niwai5yxp6wry41l33j5xip10f2lbyzc3"; depends=[]; }; + powerindexR = derive2 { name="powerindexR"; version="1.6"; sha256="1q8g60awv2sq4fm0kd2dzrgkwfk6mjvglgwihqspapb1zv9ild4z"; depends=[]; }; powerjoin = derive2 { name="powerjoin"; version="0.1.0"; sha256="19b7y7aqf5159x2fi5nrx179nc673qqzkv9c8kgw85hmmjzjgnb3"; depends=[cli dplyr glue purrr rlang tibble tidyr tidyselect vctrs]; }; powerly = derive2 { name="powerly"; version="1.8.6"; sha256="0vc2wpx2b4i9vx9jvvlywq5w4dx22bn4r9fcwz123h1m09252ng8"; depends=[bootnet ggplot2 mvtnorm osqp patchwork progress qgraph quadprog R6 rlang splines2]; }; powerpkg = derive2 { name="powerpkg"; version="1.6"; sha256="18cq3zsdvzmqjp0niq0libjk4riarmiar3h6lifq54spqgrvvxh2"; depends=[]; }; @@ -15713,21 +15970,23 @@ in with self; { ppdiag = derive2 { name="ppdiag"; version="0.1.1"; sha256="1p2nbkv2jsqdwwipyp3mz9cpy9lkia2cmigbcpjsa2d2i655hvs5"; depends=[]; }; ppendemic = derive2 { name="ppendemic"; version="0.1.7"; sha256="0f9gqhkgg1vd3di1xfx0ix4is30v3abcyldpkbnj81kv60zmzcfr"; depends=[]; }; ppgam = derive2 { name="ppgam"; version="1.0.1"; sha256="0w2jci5k0y8m7rapj8w6xq849y59m7y4fp9n3f5l6q954mbc6bv0"; depends=[evgam MASS mgcv]; }; + ppgm = derive2 { name="ppgm"; version="1.0.3"; sha256="0fvir7fw1qzx1z0kjaaqsq13ljk5l0i4rdvpl75j6nnpd59yhyyh"; depends=[animation ape fields geiger phangorn phytools sf sp stringi]; }; ppgmmga = derive2 { name="ppgmmga"; version="1.3"; sha256="0ms6pqhdvws6dp27mgvwdm039h6z3psgbdmy2k6wq1wqr5jbsiz1"; depends=[cli crayon GA ggplot2 mclust Rcpp RcppArmadillo]; }; - ppitables = derive2 { name="ppitables"; version="0.5.4"; sha256="0hssk8yf8f15x7m03x71v9yrshrzgkww8xfacbbsw5mpqcghc9zl"; depends=[tibble tidyr]; }; + ppitables = derive2 { name="ppitables"; version="0.5.5"; sha256="1wrscfgdbhnb7z0n44yw3yhw5dmr5jd7g1m69nkx61n6dfzj7mi2"; depends=[tibble tidyr]; }; ppmHR = derive2 { name="ppmHR"; version="1.0"; sha256="1fc9rrk3ir3dq5d518ih67dvknhz1ln6668wy2mzsdndaysgm12g"; depends=[nleqslv]; }; ppmSuite = derive2 { name="ppmSuite"; version="0.3.4"; sha256="1n83v59v5b68d0xw3yh6xrpy480857rkkwfxclbnwnh7cj14cybm"; depends=[Matrix]; }; ppmf = derive2 { name="ppmf"; version="0.1.3"; sha256="0xphk27frlcr87jwjbgwf77c8bhv0nswmffj9ny2vd1b176bi9xn"; depends=[censable dplyr magrittr readr rlang stringr tibble tidyr zip]; }; ppmlasso = derive2 { name="ppmlasso"; version="1.4"; sha256="082f5ij43iyfw1i864va4cdklfnv5zs4i21f1kcai2dlcqs5kc0v"; depends=[data_table lattice plyr spatstat spatstat_explore spatstat_geom spatstat_model]; }; pps = derive2 { name="pps"; version="1.0"; sha256="0k06rkzdx07qcndqym44q6xyawdd253i3kbyqlmlavadsizp657g"; depends=[]; }; ppsbm = derive2 { name="ppsbm"; version="0.2.2"; sha256="0y4whxv14jqx7mqxj7n427vpbxb5rkwj8xvx0mj4knnwy9v437z4"; depends=[clue gtools Rfast]; }; - ppseq = derive2 { name="ppseq"; version="0.2.3"; sha256="0kvsspzcnpc1asvy72imifx184m102027m5r8z38v58hvmzgl8mm"; depends=[dplyr furrr ggplot2 patchwork plotly purrr tibble tidyr]; }; + ppseq = derive2 { name="ppseq"; version="0.2.4"; sha256="1yf0pyfkb2knjn2gf36jhy0qpxwzil37s3zhp3a97cq80jza47hd"; depends=[dplyr furrr ggplot2 patchwork plotly purrr tibble tidyr]; }; ppsr = derive2 { name="ppsr"; version="0.0.5"; sha256="0k8y8vk8y0nnp1w26h7q9xyfbdx2q61ijnwh202j76wq6znr8yva"; depends=[ggplot2 gridExtra parsnip rpart withr]; }; pqantimalarials = derive2 { name="pqantimalarials"; version="0.2"; sha256="0azxkf1rvk9cyzr4gbp4y2vcxrxw3d4f002d5gjkvv1f4kx8faw1"; depends=[plyr RColorBrewer reshape2 shiny]; }; + pql = derive2 { name="pql"; version="0.1.0"; sha256="10gify86gywwahxj5hzwqnbx22a42jkmry2jkz7ywfsgznzldffw"; depends=[pracma]; }; pqrBayes = derive2 { name="pqrBayes"; version="1.0.2"; sha256="0mbhkha99qyk5hkpk13ysb0686lcn6q9vq34838fz1l7xy47mzw3"; depends=[glmnet Rcpp RcppArmadillo]; }; pqrfe = derive2 { name="pqrfe"; version="1.1"; sha256="0apsrlgricjmv202yg1h3iz2715nmf05wcvyznnha0nil7cqg0qi"; depends=[MASS Rcpp RcppArmadillo]; }; prWarp = derive2 { name="prWarp"; version="1.0.1"; sha256="1iibz1gjx5r51jvv1g7csir871ccl74p0jcqnx6cs78i7xg02wf6"; depends=[Morpho]; }; - praatpicture = derive2 { name="praatpicture"; version="1.0.0"; sha256="0k00dk5yj4q05smiy2cb0im0wymapmvmcmrgr3zxhfisbm1d80np"; depends=[av crayon emuR gifski gsignal ipa phonTools rPraat rstudioapi soundgen tuneR wrassp]; }; + praatpicture = derive2 { name="praatpicture"; version="1.2.0"; sha256="1gbarx2s59k1nz78g3g3l4mj586v75pyw16h33kwrfhhpfd3sxd7"; depends=[av bslib crayon emuR gifski gsignal ipa phonTools rPraat rstudioapi shiny shinyjs soundgen tuneR wrassp]; }; prabclus = derive2 { name="prabclus"; version="2.3-3"; sha256="1haq8dvvi21fdnzl7ykm28sif5nv9pybir96vrqfcmy3k8500p80"; depends=[MASS mclust]; }; pracma = derive2 { name="pracma"; version="2.4.4"; sha256="0zxsqr7f4pcr1nmbbzliihyldv091ykzajv1mbdrkycp46pz6khs"; depends=[]; }; pracpac = derive2 { name="pracpac"; version="0.2.0"; sha256="0c9vr6lxw6yslfv8vap78mxdf10jz8rswas50ld0dnx1qrfpgliy"; depends=[fs glue magrittr pkgbuild renv rprojroot]; }; @@ -15743,21 +16002,21 @@ in with self; { precisePlacement = derive2 { name="precisePlacement"; version="0.1.0"; sha256="1w48k4kv3xm8br7dgbpx2rcdxjh0g0aw8xa1snqy0ig8a992804b"; depends=[]; }; precisely = derive2 { name="precisely"; version="0.1.2"; sha256="1zzg2fgf58gjq081rklqjf8wxz8mf7rc3vyhbji3j3n6j0x125n4"; depends=[dplyr ggplot2 magrittr purrr rlang shiny shinycssloaders shinythemes tidyr]; }; precmed = derive2 { name="precmed"; version="1.0.0"; sha256="1hkdm1fqq9fswfii9ac016xfnbggdvxcvazi5l8ir0vna9jfkcwb"; depends=[dplyr gam gbm ggplot2 glmnet MASS MESS mgcv randomForestSRC rlang stringr survival tidyr]; }; - precommit = derive2 { name="precommit"; version="0.4.0"; sha256="08fxmxvi4dg93y5k60wy8fqy6admfh6cpdjji0kxfljaibjixdcm"; depends=[cli fs here magrittr purrr R_cache rlang rprojroot withr yaml]; }; + precommit = derive2 { name="precommit"; version="0.4.2"; sha256="15ll48m3aw7gg99vqvbrygms6hwlpgmpnz56n7x1drqwzl59qgf7"; depends=[cli fs here magrittr purrr R_cache rlang rprojroot withr yaml]; }; precondition = derive2 { name="precondition"; version="0.1.0"; sha256="0srmr33q56dimkn0m7aad19ddrp28a0dzrpnyh4hglwy9zxfqz9j"; depends=[rlang]; }; precrec = derive2 { name="precrec"; version="0.14.4"; sha256="03hvp5h7fz4v2aswxim0mqgj9rdrhnk5xqz212161kpcrw6m67z8"; depends=[assertthat data_table ggplot2 gridExtra Rcpp rlang withr]; }; predReliability = derive2 { name="predReliability"; version="0.1.0"; sha256="18s9ijg3fcg6qb0y6pnwngmv69ajm93z0xjdzkq3fp5bxk1qylyb"; depends=[cluster rpart]; }; predRupdate = derive2 { name="predRupdate"; version="0.1.1"; sha256="087jkaw27lssh7400gjbjd9d583aiz7fm6a70cjhxwf5f8s8qpp8"; depends=[ggplot2 ggpubr pROC rlang survival]; }; predfairness = derive2 { name="predfairness"; version="0.1.0"; sha256="0b9d6a2rk6vw4y5hnh721gmirnm419yynbfg7arjb96558l282kd"; depends=[]; }; - predhy = derive2 { name="predhy"; version="2.0.1"; sha256="00p75lxs2fy1815c3hb5qifhv210vxi4kr650rhiig6bh5bhb9il"; depends=[BGLR doParallel foreach glmnet lightgbm pls xgboost]; }; - predhy_GUI = derive2 { name="predhy.GUI"; version="1.0"; sha256="0jxx6mqw0rll4idn92hgwqpj48kd155xl49iw3xwy33gqabg9gn7"; depends=[BGLR data_table doParallel DT foreach glmnet htmltools pls predhy randomForest shiny xgboost]; }; - predict3d = derive2 { name="predict3d"; version="0.1.4"; sha256="0pnp2p4h28mpygzg13v8g9lza0cpfhdg3m8h1ziwrkvi3bg1y97m"; depends=[dplyr ggiraphExtra ggplot2 magrittr modelr plyr prediction purrr reshape2 rgl rlang stringr tidyr]; }; + predhy = derive2 { name="predhy"; version="2.1.1"; sha256="0s38gzbynvllf4fi1mrjd2yj24sc091gi5cd8vbj63pl8qkbfjjc"; depends=[BGLR doParallel foreach glmnet lightgbm pls xgboost]; }; + predhy_GUI = derive2 { name="predhy.GUI"; version="2.0.1"; sha256="04grfxb18vqhdh3ylq7dm3z3kal21nkr33pgj9698lzy1gn6ki22"; depends=[BGLR data_table doParallel DT foreach glmnet htmltools lightgbm pls predhy shiny xgboost]; }; + predict3d = derive2 { name="predict3d"; version="0.1.5"; sha256="1qfr9ixdzcr2v030fds2h3fmyx4xhc5lbbg44i4imzg96w1z3lxy"; depends=[dplyr ggiraphExtra ggplot2 magrittr modelr plyr purrr reshape2 rgl rlang stringr tidyr]; }; predictMe = derive2 { name="predictMe"; version="0.1"; sha256="0n4sv9ahyvly17grlilybb7vwq9pzyn6mvhcn8z9cyswqa7svs49"; depends=[ggplot2 Rdpack reshape2]; }; predictNMB = derive2 { name="predictNMB"; version="0.2.1"; sha256="1g4mak6n3ris9hdk6pl0zb6jmh5ziicqbfv7y6p2i304af768pgy"; depends=[assertthat cutpointr dplyr ggplot2 magrittr pmsampsize rlang scales tibble tidyr]; }; - prediction = derive2 { name="prediction"; version="0.3.14"; sha256="0awlq5lxfia6m2b91w73rksp93rbwv5gwqb36wbji4rgq41rzbrx"; depends=[data_table]; }; + prediction = derive2 { name="prediction"; version="0.3.18"; sha256="194p2zbypslkd7slnvqw2z456xxwfzjxd11dirhpffjcsizkgrnh"; depends=[data_table]; }; predictionInterval = derive2 { name="predictionInterval"; version="1.0.0"; sha256="029hc57cblfcbqckrghf95l2rkn7acgb4yr36da01bx8bmpww0bn"; depends=[ggplot2 MASS MBESS pbapply]; }; predictmeans = derive2 { name="predictmeans"; version="1.1.0"; sha256="1010s79c55vndv3v4my0xrmdxvgpy7vhp46j1anxvr3xzgx1279q"; depends=[car ggplot2 glmmTMB HRW lme4 lmeInfo lmerTest lmeSplines MASS Matrix nlme numDeriv pbkrtest plotly plyr splines2]; }; - predictoR = derive2 { name="predictoR"; version="3.0.3"; sha256="1r96kclzkybzplssf2ql0grv34p6ff01vplp8bv3ivckmkln8qgz"; depends=[colourpicker config dplyr DT echarts4r glmnet golem htmltools loadeR rlang rpart_plot shiny shinyAce shinycustomloader shinydashboard shinydashboardPlus shinyjs traineR xgboost xtable]; }; + predictoR = derive2 { name="predictoR"; version="3.0.10"; sha256="0lj13rn9dpx0rqxb03abisa06ihphmrq5shpv6q2p0qb857pgmkf"; depends=[colourpicker config dplyr DT echarts4r glmnet golem htmltools loadeR rlang rpart_plot shiny shinyAce shinycustomloader shinydashboard shinydashboardPlus shinyjs traineR xgboost xtable]; }; predictrace = derive2 { name="predictrace"; version="2.0.1"; sha256="0xy1vkxgqq9faa62shbdkg3fgwwm8khybbhagqwc6a01ibm32mnk"; depends=[dplyr]; }; predicts = derive2 { name="predicts"; version="0.1-11"; sha256="1jvaayy7qwi2l8q8m8r42b6rj3945z9vrpgdds6dz8qz35clrpir"; depends=[terra]; }; predieval = derive2 { name="predieval"; version="0.1.1"; sha256="096zfb94iixza0lfzr4p21gkcs9hl7h0d5jhbzdi3hhyz80zymrj"; depends=[ggplot2 Hmisc MASS Matching]; }; @@ -15783,7 +16042,7 @@ in with self; { preseqR = derive2 { name="preseqR"; version="4.0.0"; sha256="1g2rnnmi45649vpy6z45v5i3wxm54s138ajqrzwi3a5r7x3xnhq1"; depends=[polynom]; }; presize = derive2 { name="presize"; version="0.3.7"; sha256="1qabv7lsrd0rrjkg7icr7qxj4jrx78s6rh1n961s6qrw6gldq4ga"; depends=[kappaSize shiny]; }; presmTP = derive2 { name="presmTP"; version="1.1.0"; sha256="134p58zzk8i0whscvl5qdfn4niksypyxavq1m15cvw4zzk4dk6fw"; depends=[mgcv survPresmooth]; }; - pressuRe = derive2 { name="pressuRe"; version="0.2.3"; sha256="1i73706wpa06zaz5zdb25dshpzwdfyxl160s8nr4pjx5bczaigsh"; depends=[abind dplyr gdistance ggmap ggplot2 magick magrittr pracma raster readxl scales sf stringr zoo]; }; + pressuRe = derive2 { name="pressuRe"; version="0.2.4"; sha256="14cidhyfngzimpxj7cgb1588dzr363dqbngh2rahhcg5rhivz9zc"; depends=[abind dplyr gdistance ggmap ggplot2 magick magrittr pracma raster readxl scales sf stringr zoo]; }; pretest = derive2 { name="pretest"; version="0.2"; sha256="11q90wf2sis0km20xnpx5wr7h7p80vl2bpah5m1a56qixswql5cm"; depends=[]; }; prettifyAddins = derive2 { name="prettifyAddins"; version="2.6.1"; sha256="0ncj10j1ygc1dhlqdg5vklzf258bjbg6mry8i8vqqh1dxvl2djwr"; depends=[chromote httr rstudioapi shiny webdriver xml2 XRJulia]; }; prettyB = derive2 { name="prettyB"; version="0.2.2"; sha256="1wszcmn5jnk02iyvjld42291m1irfp9m0b3lcdyyp41iq3icm67g"; depends=[]; }; @@ -15801,7 +16060,7 @@ in with self; { previsionio = derive2 { name="previsionio"; version="11.7.0"; sha256="08hrklr3ngphdhp50lkz6ls9nn1bzdvs6xj583spsw4vm7j44yfr"; depends=[data_table futile_logger httr jsonlite magrittr Metrics plotly XML]; }; prevtoinc = derive2 { name="prevtoinc"; version="0.12.0"; sha256="0ypdxcx9gh87a7ih3cw3yai47rzv41qwh4kpk6007ai8jkjv4n9w"; depends=[dplyr purrr rlang tibble]; }; priceR = derive2 { name="priceR"; version="1.0.1"; sha256="0yf7hgvbm8a0ks2c8wnim8b9kqk7dljnaahw7faq2lzn67751dqc"; depends=[dplyr gsubfn jsonlite lubridate purrr stringi stringr tidyr]; }; - pricelevels = derive2 { name="pricelevels"; version="1.0.2"; sha256="06997bxch7klpkibpszpwm2lr6kyl6fnxrphnw379hx3vac2p4zx"; depends=[data_table minpack_lm]; }; + pricelevels = derive2 { name="pricelevels"; version="1.3.0"; sha256="1mi949l7fczcsha81qlviaq14882062v7wr4raxavhb5hg1m057r"; depends=[data_table minpack_lm]; }; pricesensitivitymeter = derive2 { name="pricesensitivitymeter"; version="1.3.0"; sha256="136y3dfm6chznp8bnyw6xd9wkv265j3ykqicxib1vwgwaprg6zdm"; depends=[ggplot2 rlang survey]; }; prim = derive2 { name="prim"; version="1.0.21"; sha256="085dwmflag45qg0p4w2f9v000zj2kfaijp6jm11dj85swxmx7vjm"; depends=[plot3D scales]; }; primate = derive2 { name="primate"; version="0.2.0"; sha256="0agrz57xvk8azvb8af299l0g0iwamxy0l0m5y41rlsi03szszlii"; depends=[caroline]; }; @@ -15815,13 +16074,13 @@ in with self; { prinvars = derive2 { name="prinvars"; version="1.0.0"; sha256="10cxp5dqjmi0kbx8g2qvpvwv2lcdg4sd2njg81l9g8dphx0c662f"; depends=[elasticnet PMA Rdpack]; }; prioGene = derive2 { name="prioGene"; version="1.0.1"; sha256="0k1rlvmfhj1m2zp5zaac8wcwjypd6f4dd8fxxsyrzsafp9aw189l"; depends=[AnnotationDbi org_Hs_eg_db]; }; prioriactions = derive2 { name="prioriactions"; version="0.5.0"; sha256="0k0vaqpdj9rlxcmfn6qb1bj8ssbazj33qa4rg4l8agpf9x83n9f8"; depends=[assertthat BH dplyr magrittr Matrix proto Rcpp RcppArmadillo rlang tidyr]; }; - prioritizr = derive2 { name="prioritizr"; version="8.0.3"; sha256="0049mgziwlhh68rnv3g3h55ln36wdi6ypf8pb9vpwnl9c72zh0ld"; depends=[ape assertthat BH cli exactextractr igraph magrittr Matrix R6 raster Rcpp RcppArmadillo rlang sf slam terra tibble withr]; }; + prioritizr = derive2 { name="prioritizr"; version="8.0.4"; sha256="18z5zm34ry45kapp0a146gvwij41wyhhxxyzwiz7ly79l6lwgs9s"; depends=[ape assertthat BH cli exactextractr igraph magrittr Matrix R6 raster Rcpp RcppArmadillo rlang sf slam terra tibble withr]; }; prioritizrdata = derive2 { name="prioritizrdata"; version="0.3.2"; sha256="0dvxh43dk9mhsqdj89zilh3r91cqngl07ggw5r5rj761xl3km10w"; depends=[sf terra tibble]; }; prioritylasso = derive2 { name="prioritylasso"; version="0.3.1"; sha256="1vn4i7rg1nsir98lgaxnw4851rwyv8kx25z8nc942qsr3r7cvdf6"; depends=[checkmate glmnet survival]; }; prism = derive2 { name="prism"; version="0.2.1"; sha256="1fgmv58igvkp11n8jgqvxd2qpccpv3s6xwzm2678ikrgc3hynj0x"; depends=[dplyr ggplot2 httr magrittr raster readr stringr]; }; prismadiagramR = derive2 { name="prismadiagramR"; version="1.0.0"; sha256="13x3y4rv9b2d013jd6853zkq8rbxq88wlffmdnjs1rca0fnfrn4f"; depends=[DiagrammeR dplyr]; }; - prismatic = derive2 { name="prismatic"; version="1.1.1"; sha256="013i0mq4n8s2zbzvfrz1vjcn2a6l98bamslkcv1a3cn70gpphja9"; depends=[farver]; }; - prismjs = derive2 { name="prismjs"; version="1.1.0"; sha256="0siga7l60d0axlnjwbl4smw28rggyxrjwzv8ypw9bhb6x1xnn8in"; depends=[V8 xml2]; }; + prismatic = derive2 { name="prismatic"; version="1.1.2"; sha256="0qg2f5d7sz6q0ijrrdmjhp1msx9n77wndphrqqhjkdf9six5pgxs"; depends=[farver]; }; + prismjs = derive2 { name="prismjs"; version="2.0.0"; sha256="032m8brgsvgdry8y1hsigl8pnckh13d23ylsj4hsga6dbyvkj7lf"; depends=[V8 xml2]; }; prisonbrief = derive2 { name="prisonbrief"; version="0.1.2"; sha256="06550fnnffpcnv4q2nicrm7p573313lvnj6hkdrf7979ygrsmmfi"; depends=[dplyr httr magrittr passport rnaturalearth rnaturalearthdata rvest sf stringr tibble tidyr xml2]; }; prithulib = derive2 { name="prithulib"; version="1.0.2"; sha256="12ybksrvxzc5gjz8m38cs35b7r3kd8m0zqm2c67pqw38vq82sjxm"; depends=[]; }; prnsamplr = derive2 { name="prnsamplr"; version="0.3.0"; sha256="1qhrk6am6irp5m0gh61vv6612738p0kwjcvgdnza50731rias8v7"; depends=[]; }; @@ -15830,6 +16089,7 @@ in with self; { probably = derive2 { name="probably"; version="1.0.3"; sha256="1ck84r63n72nf8w4v5kfyvhk7b8r6j1hq3sdcclar1k965yphl8n"; depends=[butcher cli dplyr furrr generics ggplot2 hardhat pillar purrr rlang tidyr tidyselect tune vctrs withr workflows yardstick]; }; probe = derive2 { name="probe"; version="1.1"; sha256="1bgkbsx8aa0r5dpnr1nv2q9p6af40dfzl3g333wmdg1dd6d2zp4n"; depends=[glmnet Rcpp RcppArmadillo]; }; probout = derive2 { name="probout"; version="1.1.2"; sha256="1x7q878xzw1b1c6jfx856akxzcxrwanv67jji2ifkcdx2hgmgvpx"; depends=[FNN MASS mclust]; }; + probstats4econ = derive2 { name="probstats4econ"; version="0.2.0"; sha256="1xjf4i5jw0qf87zmizkwbb9i0fd0gji40kwvm9nz5gxyns98fqmk"; depends=[]; }; proccalibrad = derive2 { name="proccalibrad"; version="0.14"; sha256="0vr55rpcqh9wvy3bklssrimp42x85w3sanjgshfij657v68vmx46"; depends=[]; }; proceduralnames = derive2 { name="proceduralnames"; version="0.2.2"; sha256="1jdaizvsmw1ipbjm2qbgfvnkaz68zga7i8lp7yjf5rfzjvfi1hwq"; depends=[]; }; processanimateR = derive2 { name="processanimateR"; version="1.0.5"; sha256="054m578ifb4hhlalijkdmjxifn36vy61sdzjgcr1gg4yxfi2fbx3"; depends=[bupaR DiagrammeR dplyr htmltools htmlwidgets magrittr processmapR rlang stringr tidyr]; }; @@ -15838,6 +16098,7 @@ in with self; { processmonitR = derive2 { name="processmonitR"; version="0.1.0"; sha256="1ckr438yifpsh095j6bb65dq3rdm7cfm8k7qsjmcqwjkww4j74z8"; depends=[bupaR dplyr edeaR ggplot2 magrittr miniUI shiny]; }; processpredictR = derive2 { name="processpredictR"; version="0.1.0"; sha256="161gbyq21j5yip5p8p235mvcffchm7c8ksks1z7q5cwbrilcx380"; depends=[bupaR cli data_table dplyr edeaR forcats ggplot2 glue keras magrittr mltools plotly progress purrr reticulate rlang stringr tensorflow tidyr tidyselect]; }; processx = derive2 { name="processx"; version="3.8.4"; sha256="02z7n59pglz6jw1vyyl0mkc7mz2c7y8yzsnhq5yz62digwnnf9v6"; depends=[ps R6]; }; + proclhmm = derive2 { name="proclhmm"; version="1.0.0"; sha256="05pwa09bkclzshyk3jsnhsj43vdp89miw3zznj082zj9484vfhzj"; depends=[Rcpp statmod]; }; procmaps = derive2 { name="procmaps"; version="0.0.5"; sha256="0c5cby1942s9vdl0a6nyiih6x7kxii02w2l4fp8n9z07h7j5jb69"; depends=[]; }; procs = derive2 { name="procs"; version="1.0.6"; sha256="06hsdzw23854pc9zirbbfzm451ybllrp5gx6b4bk0pd8wv1iza01"; depends=[common fmtr reporter sasLM tibble]; }; prodest = derive2 { name="prodest"; version="1.0.1"; sha256="16nqgd9wrjfxymwbxrnlak54cagbv3fxgbql0w5bxnmyrbbqy509"; depends=[AER DEoptim dplyr Matrix Rsolnp]; }; @@ -15852,7 +16113,7 @@ in with self; { profileR = derive2 { name="profileR"; version="0.3-5"; sha256="0fgc7585a7194c67irafjnx8g2j6mn3qhcfn76c6dh28clp20qp9"; depends=[ggplot2 lavaan RColorBrewer reshape]; }; profiplots = derive2 { name="profiplots"; version="0.2.3"; sha256="0b2i1m9x7aqhlizv059q1gv8m15myim4q0s81gaskqf9rid83apz"; depends=[ggplot2]; }; profmem = derive2 { name="profmem"; version="0.6.0"; sha256="0gg6ja0ifwn9jj42rw1gnyil55sl9r2y5rjb6yjcvqwd5arajp3l"; depends=[]; }; - profoc = derive2 { name="profoc"; version="1.3.1"; sha256="1clickjw8v43p6p35mkyw303adnnr0zrm5ppnvslz2gjlybfp94q"; depends=[abind generics ggplot2 lifecycle Matrix Rcpp RcppArmadillo RcppProgress splines2 tibble]; }; + profoc = derive2 { name="profoc"; version="1.3.2"; sha256="1vs5l6f18maga6v27wschxzsbr5i4wqwsd64mz4z666rf92d7l60"; depends=[abind generics ggplot2 lifecycle Matrix Rcpp RcppArmadillo RcppProgress rcpptimer splines2 tibble]; }; profr = derive2 { name="profr"; version="0.3.3"; sha256="00bv1q0qn46nz4zjfs0l2yfh3hk71rajlp2rrlwg442z11k79ap9"; depends=[plyr stringr]; }; profrep = derive2 { name="profrep"; version="1.0.0"; sha256="0p2sd95w8n4l2mxyzjxppynfdqbg6znd69360mgyci3r61za2z6z"; depends=[]; }; proftools = derive2 { name="proftools"; version="0.99-3"; sha256="095pxyyv6k818qwcjygbz1h24k0xkqi1agns8cqh2m5g64aynd70"; depends=[]; }; @@ -15869,25 +16130,25 @@ in with self; { prolsirm = derive2 { name="prolsirm"; version="0.1.0"; sha256="1nx4bal130r3c7hb0x5j22rh7988p62qll3rm0j8wkiqdnqkyhay"; depends=[MCMCpack]; }; prome = derive2 { name="prome"; version="1.9.1.0"; sha256="134nc90av9js4qdq7dxy7z93h621i6w1vbgly38minprfam0wwm0"; depends=[BH Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; promethee123 = derive2 { name="promethee123"; version="0.1.0"; sha256="0s1wkcrvm32dpqg9ahn10kni1xv3ll7akqz4y6yn1d36km81bf21"; depends=[cowplot ggplot2]; }; - promises = derive2 { name="promises"; version="1.2.1"; sha256="1gp55inqbbj0ifm4n0j5h8854a9v109xpikyhwv7b8lyydns5q1w"; depends=[fastmap later magrittr R6 Rcpp rlang]; }; + promises = derive2 { name="promises"; version="1.3.0"; sha256="1lzs65csxaq26d1g37qjjgxzm418xv52c3ccpk0l0cxkpbrrs87q"; depends=[fastmap later magrittr R6 Rcpp rlang]; }; promor = derive2 { name="promor"; version="0.2.1"; sha256="0cpf6946522lhnsr6fxm8ppvq69vjpkx7p7p0chx7kibc9ivb1ia"; depends=[caret ggplot2 ggrepel gridExtra kernlab limma missForest naivebayes pcaMethods pROC reshape2 statmod VIM viridis xgboost]; }; promote = derive2 { name="promote"; version="1.1.1"; sha256="1cdz4xqinyzpbbgkxxd4f86n1h8zj88vp5z6w01cxd5ykyjf5411"; depends=[httr jsonlite stringr]; }; promotionImpact = derive2 { name="promotionImpact"; version="0.1.5"; sha256="18iq2r5zirddlfx20alm6qnxf9qv3ii3c9bcm789q0q18d2hyj2q"; depends=[crayon dplyr ggplot2 ggpubr KernSmooth lmtest prophet Rcpp reshape2 scales stringr strucchange]; }; prompt = derive2 { name="prompt"; version="1.0.2"; sha256="12fqdz906b96h4iaa1hpfwamp94c9am5287l57dsh2g4dpqvw91l"; depends=[cli]; }; - prompter = derive2 { name="prompter"; version="1.1.0"; sha256="113gk5wwsaw0kh7z6caarlp7g536w3ibq3bnm53zp35rij7zrynz"; depends=[shiny]; }; + prompter = derive2 { name="prompter"; version="1.2.0"; sha256="18bbgcirw6z1vwna4bad4f4s4wnfq62bf9mzkakzlrn59kq9rxgc"; depends=[shiny]; }; promr = derive2 { name="promr"; version="0.1.3"; sha256="0b737gyg828s2m30l77qc59caazdsp84cg8a72arg0fqs70hk580"; depends=[httr tibble urltools]; }; prop_comb_RR = derive2 { name="prop.comb.RR"; version="1.2"; sha256="10s52fkq7rv6v4gw1yd46f0fbg89ksim0qhgb5jbglzrqh585ny5"; depends=[rootSolve]; }; propOverlap = derive2 { name="propOverlap"; version="1.0"; sha256="0q72z9vbkpll4i3wy3fq06rz97in2cm3jjnvl6p9w8qc44zjlcyl"; depends=[Biobase]; }; propagate = derive2 { name="propagate"; version="1.0-6"; sha256="17jinz1jramlsf87i7vyn2qp82rc1dacljfaxxplrk3crhw3bhs7"; depends=[ff MASS minpack_lm Rcpp tmvtnorm]; }; properties = derive2 { name="properties"; version="0.0-9"; sha256="1zd66cg31yd53rqsc0cwxhlpfn7kvc67qdh3vyj9qib8kwxaw1zl"; depends=[]; }; prophet = derive2 { name="prophet"; version="1.0"; sha256="06mryavky9xj54ig4scqjgpx7i56nwhs53g0zqsbs9f6qxja7gll"; depends=[BH dplyr dygraphs extraDistr ggplot2 lubridate Rcpp RcppEigen RcppParallel rlang rstan rstantools scales StanHeaders tidyr xts]; }; - proporz = derive2 { name="proporz"; version="1.4.0"; sha256="0han6vhdlzywcvw02w3rgmh4513kcl825ca4991igh15vssjy617"; depends=[]; }; + proporz = derive2 { name="proporz"; version="1.5.0"; sha256="0yvrmrbvv9dmcl6ry42whr40dlirirrr5xdn591qim5lkwxc17y1"; depends=[]; }; prospectr = derive2 { name="prospectr"; version="0.2.7"; sha256="0hg2afw5aixx0xdwwr6g0wi8sksn7r21hz8diyqxg2345rwnzbg4"; depends=[foreach iterators lifecycle mathjaxr Rcpp RcppArmadillo]; }; protHMM = derive2 { name="protHMM"; version="0.1.1"; sha256="0j4n24dfvg6qqmyf5qljx34jr9p073hqflmzj57gyb8vwfzq6psr"; depends=[gtools phonTools]; }; protViz = derive2 { name="protViz"; version="0.7.9"; sha256="1wsjr4asjsknv8fkfv15xqnl67zfv8d2xmvw1i2l0wflxbps3af7"; depends=[Rcpp]; }; protag = derive2 { name="protag"; version="1.0.0"; sha256="1iaw2w1d7hdvlg5vplpqc49wq08dgmm0ifvp2v0ggqb8invvdnw8"; depends=[dplyr ggplot2 RColorBrewer]; }; protein8k = derive2 { name="protein8k"; version="0.0.1"; sha256="11qj4sadhcsp1kk5kjmvzj2jnd3srsm5mp0q9h9khp1ps6dk35yw"; depends=[dplyr ggplot2 gridExtra lattice magick pryr rjson rlang shiny]; }; - proteomicsCV = derive2 { name="proteomicsCV"; version="0.1.0"; sha256="0yf1shzqmvsvaywv7xxidx3dw2wfx6vm1kgnygdfvq0hqkj0c5n7"; depends=[]; }; + proteomicsCV = derive2 { name="proteomicsCV"; version="0.2.5"; sha256="0wkyp21ns3k8812k109ilm9yi1y89m524cwwpa4wr0vqy65lrgba"; depends=[]; }; proteus = derive2 { name="proteus"; version="1.1.4"; sha256="1i8h07k5pdsywpw5g8d06xgl5gk06g5q93jimfwkbry9ykagh1cw"; depends=[abind actuar dplyr fANCOVA furrr future ggplot2 ggthemes greybox imputeTS lubridate modeest moments narray purrr readr scales sn stringr tictoc torch VGAM]; }; proto = derive2 { name="proto"; version="1.0.0"; sha256="1l843p8vckjckdhgv37ngv47fga5jzy0n00pmipvp05nnaixk54j"; depends=[]; }; protoclust = derive2 { name="protoclust"; version="1.6.4"; sha256="0cbl9jxdc2j4z5viczl70zcd9z83qlipvkqi5f2bpypyvi2s0xs1"; depends=[]; }; @@ -15895,8 +16156,8 @@ in with self; { proton = derive2 { name="proton"; version="1.0"; sha256="1mgaw54is8l6ac1rf8s70rj7kv9xgsfdrlvjz01ggfwg7c6pyr3s"; depends=[digest]; }; protoshiny = derive2 { name="protoshiny"; version="0.1.0"; sha256="0ms8sy8p5cd8vg82m7pny6jcg5mis1l7548m2g392gjcf3hf1sf7"; depends=[DT dynamicTreeCut protoclust rare shiny shinycssloaders shinythemes]; }; prototest = derive2 { name="prototest"; version="1.2"; sha256="07g58hq2qdpczqhjsv6dq1bya9rs958r103n91icw5yc19bvyhi2"; depends=[glmnet intervals MASS Rcpp RcppArmadillo]; }; - protr = derive2 { name="protr"; version="1.7-0"; sha256="0hb7pixd2qa48bsv86ygdxs6v8sd0hksq99xpzr9d50nprzjmhj4"; depends=[]; }; - protti = derive2 { name="protti"; version="0.7.0"; sha256="1k05z9c8801gylmv4d0n5baqmzdhv38jpkmxm4qm34y2gyh10n0l"; depends=[curl data_table dplyr forcats ggplot2 ggrepel httr janitor lifecycle magrittr plotly progress purrr R_utils readr rlang stringr tibble tidyr]; }; + protr = derive2 { name="protr"; version="1.7-1"; sha256="1dakbkj07l2mnmnmi9j2xv0lk1bm8qpzac8s9gg7j4xpwsf0yyl7"; depends=[]; }; + protti = derive2 { name="protti"; version="0.8.0"; sha256="052ffldvy7a1h1z1c2gq9hdmhhwwiia5l6cyikq5j7yb8g1ff1n3"; depends=[curl data_table dplyr forcats ggplot2 ggrepel httr janitor lifecycle magrittr plotly progress purrr R_utils readr rlang stringr tibble tidyr]; }; proustr = derive2 { name="proustr"; version="0.4.0"; sha256="1qp4v4vb1qh137qn7zi1d2g999z17kq6kpyxy9355mj8c49iy8pn"; depends=[attempt rlang SnowballC stringr tidyr tokenizers]; }; provDebugR = derive2 { name="provDebugR"; version="1.0.1"; sha256="0ynz5m1gkaj1wks5l71r3iz7npf3mz0r04jsa8zwg670zsv2x7rf"; depends=[httr jsonlite provGraphR provParseR textutils]; }; provExplainR = derive2 { name="provExplainR"; version="1.1.1"; sha256="1bkwdz6zm3wq8j16kyqiqmz5mqzizyacgh5rmhfa94rvsb9vh008"; depends=[diffobj digest dplyr provParseR stringr]; }; @@ -15905,13 +16166,13 @@ in with self; { provSummarizeR = derive2 { name="provSummarizeR"; version="1.5.1"; sha256="1sab34fhyzzzj600ks2xwyv2y1657ir5k2dzkjry8y1mwvag796j"; depends=[provParseR]; }; provTraceR = derive2 { name="provTraceR"; version="1.0"; sha256="19iillyh5zw64mmr6ik4ci1n2p651xqzxa4iq5bwa70imbzyy5ip"; depends=[provParseR]; }; provViz = derive2 { name="provViz"; version="1.0.9"; sha256="0hwd9x02xcldrmmnpknsycqlb78ngdsphs7n141rcxsv167gbmcq"; depends=[]; }; - provenance = derive2 { name="provenance"; version="4.2"; sha256="1ghdvc6h25zx1hn1x2wqbc1zc1jdxv77lg0l6msymy9ap5ndcdrn"; depends=[IsoplotR MASS]; }; + provenance = derive2 { name="provenance"; version="4.3"; sha256="07dhpbwkn5x876i2zjrmc8rb5463956lqx6snddcraywc3jplgvb"; depends=[IsoplotR MASS]; }; proverbs = derive2 { name="proverbs"; version="0.4.0"; sha256="1ilfzkpw3m8q4cr1ndygzjz363ghv0f1j5n7sw4whrzafhnlbdvg"; depends=[checkmate cli crayon glue httr2 lubridate purrr rvest stringr]; }; proxirr = derive2 { name="proxirr"; version="0.4"; sha256="0fknabfdvcmcpxai9sasnqay9ymy1vm9bvghiw9awx1lvn85024r"; depends=[]; }; proxy = derive2 { name="proxy"; version="0.4-27"; sha256="0gsng2aggnljl4z82la9hpnd26hngzhj8fizx4wx22npqjj93694"; depends=[]; }; - proxyC = derive2 { name="proxyC"; version="0.3.4"; sha256="1skq5cxd0kh2pccfg4h9bis4wbqb6zm04q4iwfa6dqml6hyiv7gk"; depends=[Matrix Rcpp RcppArmadillo RcppParallel]; }; + proxyC = derive2 { name="proxyC"; version="0.4.1"; sha256="1a124nzxldc6687kvgkg41dqfbqb7yqdgm9dj5fj8g4bax9qcgg8"; depends=[Matrix Rcpp RcppArmadillo]; }; prozor = derive2 { name="prozor"; version="0.3.1"; sha256="0gcjfjsvj2pjp9ih7nxvs9gfj5b94g8d3ziaz16wfbnjqm4a38lp"; depends=[AhoCorasickTrie docopt dplyr Matrix purrr readr rlang seqinr stringr]; }; - prqlr = derive2 { name="prqlr"; version="0.8.0"; sha256="1gppj2y5za85j63wgf1xi2gdvxhl4dj1gyfdnbnfj10xvmnvkvgy"; depends=[]; }; + prqlr = derive2 { name="prqlr"; version="0.8.1"; sha256="00i9y7yb0czhr7853v9syrcjr74v6x1a022nawjmryl831f4bl9g"; depends=[]; }; prrd = derive2 { name="prrd"; version="0.0.6"; sha256="1wr469jvzgsic38x8xr72lx7px0k6l957z4hl63bgj7w2dczwyqz"; depends=[config crayon data_table DBI liteq RSQLite]; }; prt = derive2 { name="prt"; version="0.2.0"; sha256="02f75a9ici0a7fm08r0dhykf73jpixg5cm8ym2z18dhghas4zly4"; depends=[assertthat backports cli crayon data_table fst pillar rlang tibble vctrs]; }; pryr = derive2 { name="pryr"; version="0.1.6"; sha256="013p2xxd51kr9ddx051cvn45mzgj44fm47nkchdb13l0885a7hb8"; depends=[codetools lobstr Rcpp stringr]; }; @@ -15922,27 +16183,27 @@ in with self; { psbcGroup = derive2 { name="psbcGroup"; version="1.7"; sha256="08gabhcpjsm92xrld3h14y092x05apz4b1znf10d6j3n1880fbl4"; depends=[LearnBayes mvtnorm SuppDists survival]; }; psbcSpeedUp = derive2 { name="psbcSpeedUp"; version="2.0.6"; sha256="0dyvpdr9jafnac0m7x8rdsjbsl0fbd3c5lzc5483p3nnnynnml4q"; depends=[GGally ggplot2 MASS Rcpp RcppArmadillo riskRegression survival xml2]; }; psborrow = derive2 { name="psborrow"; version="0.2.1"; sha256="0m2jcf5awlwkzscsps0fczpaflxzi0w6m9qxlzm7abip277lhgpd"; depends=[data_table doParallel dplyr foreach futile_logger ggplot2 MatchIt mvtnorm rjags survival]; }; + psborrow2 = derive2 { name="psborrow2"; version="0.0.3.4"; sha256="05mcfbgkdlx6yfiysvh3yk75c8rdcci7ql89n76vlm9h17ff5fm1"; depends=[checkmate future generics glue Matrix mvtnorm posterior simsurv]; }; pscl = derive2 { name="pscl"; version="1.5.9"; sha256="1zkfzrc1cr3f5dlz0mv45ym0as1yp9gicds6lhxpj13qk38zz1c0"; depends=[MASS]; }; pscore = derive2 { name="pscore"; version="0.4.0"; sha256="0flzqr9x0z2mjnbm5cjm8hqndkbv2yp11agkx89mbaafsg0hmjn1"; depends=[ggplot2 JWileymisc lavaan reshape2]; }; psd = derive2 { name="psd"; version="2.1.1"; sha256="1c9kq5g2p4iy1jdc9fhfs1v0hcnc8cbrpvafdpy3l4n9m66hahky"; depends=[RColorBrewer Rcpp RcppArmadillo]; }; psdr = derive2 { name="psdr"; version="1.0.1"; sha256="02ypgi1gxnp0mn9p1w2j34ypnpbkrwp9i0ma0i7657zddcfnf391"; depends=[devtools ggplot2 qpdf]; }; pseudo = derive2 { name="pseudo"; version="1.4.3"; sha256="0ccf3gz2g7g5y4acpj2qnb39hrghhdganizlddg6rx7al869fffs"; depends=[geepack KMsurv]; }; pseudohouseholds = derive2 { name="pseudohouseholds"; version="0.1.1"; sha256="102kc3j106bw6dlarmvwyh4mg68imbyxzc5j6pkzn6xpnvils3fm"; depends=[dplyr furrr sf]; }; - pseudorank = derive2 { name="pseudorank"; version="1.0.1"; sha256="1hjcvl38di1digkqg7nysd7bkljz1v7y54z2rz10fyk9lyp9mpmy"; depends=[doBy Rcpp]; }; pseval = derive2 { name="pseval"; version="1.3.1"; sha256="1jgnv1l9adhwrmkmp6wkzz7jf7w1hyqy47ajr29l21p4g037py45"; depends=[survival]; }; psfmi = derive2 { name="psfmi"; version="1.4.0"; sha256="1nda2vzmq7cz04g9irl186vkvi3dxpmcsm9dxhjiql3mrax82r8c"; depends=[car cvAUC dplyr ggplot2 lme4 magrittr mice mitml mitools norm pROC purrr rms rsample stringr survival tibble tidyr]; }; psgp = derive2 { name="psgp"; version="0.3-21"; sha256="1pcg6q1g5ipial8kyk20n15zzls4ig0m0sxcc7d3ngryir89cyzs"; depends=[automap doParallel foreach gstat intamap Rcpp RcppArmadillo sp]; }; psica = derive2 { name="psica"; version="1.0.2"; sha256="1cnrd1p8ikv0hl97jwypw8np1ypa0d8k2mizwd1clkv7inbb264g"; depends=[BayesTree gridBase party partykit randomForest Rdpack rpart]; }; - psidR = derive2 { name="psidR"; version="2.1"; sha256="06rsi6ai58yggf73hjaidjhlgc09jjk76a4drvvgfs3v0qm296mm"; depends=[data_table foreign futile_logger openxlsx RCurl SAScii]; }; + psidR = derive2 { name="psidR"; version="2.2"; sha256="0vfvx5aidd7g3s02hajnlfr8c0czzzbsrkgzfw5zx1lm4rxw8z26"; depends=[data_table foreign futile_logger openxlsx RCurl SAScii]; }; psidread = derive2 { name="psidread"; version="1.0.3"; sha256="0k1rk5bsdhf9x7znmq99snw8p5qfnysz7hlh7s7adg7hn79rifx4"; depends=[asciiSetupReader dplyr stringr tidyr]; }; + psm3mkv = derive2 { name="psm3mkv"; version="0.3.2"; sha256="0fbqyqgmjzqncx68x1cydfa9cm5k00k57d7hbb0iffcq08c0ya36"; depends=[admiral dplyr flexsurv ggplot2 pharmaverseadam purrr rlang SimplicialCubature stringr survival tibble tidyr]; }; psmineR = derive2 { name="psmineR"; version="0.1.0"; sha256="0fc30hsqkbfjj7wz2s7yn1w3hrr80k8bmj6ah8diswrq1ms12k3i"; depends=[bupaR cli data_table dplyr forcats ggplot2 glue rlang stringi tidyr]; }; pso = derive2 { name="pso"; version="1.0.4"; sha256="0dq02pv86iwxpvd8wfbryxfsxqrrw4991iim60nyh8mn02gflkmi"; depends=[]; }; psoptim = derive2 { name="psoptim"; version="1.0"; sha256="1yziabkd3h05cfl5jy5l8ji2y3w21acvxsq3inxyh0iwyr8qdkkl"; depends=[]; }; psp = derive2 { name="psp"; version="1.0.0"; sha256="0fjpjzf0m1f5xw1jrxn78m4r8ghwkcs2fsfhivbvws31gc11h7k0"; depends=[data_table Rcpp RcppArmadillo]; }; pspatreg = derive2 { name="pspatreg"; version="1.1.2"; sha256="0giaxz7zdwik6qw9xlgipxwksdia044y2h64ik2bz03hi21w5n2i"; depends=[AmesHousing dplyr fields ggplot2 MASS Matrix MBA minqa numDeriv plm Rdpack sf spatialreg spdep stringr]; }; pspearman = derive2 { name="pspearman"; version="0.3-1"; sha256="09l3knwaj4xs9dfz1xcj4mbynd4w1vxcgmzfqxz97czzbf7ingwh"; depends=[]; }; - pspline = derive2 { name="pspline"; version="1.0-19"; sha256="0h7y9l64knx291ms5mlc65dl3ljzgmrfzdqk1rd7iy8x7wcvymds"; depends=[]; }; - pspline_inference = derive2 { name="pspline.inference"; version="1.0.4"; sha256="1ijz642igm27xg3928w9ffvykai26aar5awbcilrjbkm6fk7yd4w"; depends=[assertthat dplyr magrittr mgcv plotrix plyr reshape2 rlang]; }; + pspline = derive2 { name="pspline"; version="1.0-20"; sha256="12pbjdxvb92qwzxrdag3cgaa12v9psy5whvw8p7i0p8dhydwv9za"; depends=[]; }; psqn = derive2 { name="psqn"; version="0.3.1"; sha256="05nzyapilhzwjgc3lizg424i28mshmwirpggg79hssjqmqraflpj"; depends=[Matrix Rcpp RcppEigen testthat]; }; pssmooth = derive2 { name="pssmooth"; version="1.0.3"; sha256="08syh52gjaf72kq01v6b5dljmwi29nvmjmkkgmjb97zsi15z1wd3"; depends=[chngpt MASS np osDesign]; }; pstest = derive2 { name="pstest"; version="0.1.3.900"; sha256="1rhd4vgqpr9yq0pc3xql3nfgl30v20ldywapp9n967ky2dja4k0z"; depends=[glmx MASS]; }; @@ -15956,18 +16217,17 @@ in with self; { psycho = derive2 { name="psycho"; version="0.6.1"; sha256="1a3qccr9jwrbwkfbrvckkhhk9qygrc5n4mq80kpzx0zy5bylxi0a"; depends=[bayestestR dplyr effectsize ggplot2 insight parameters scales stringr]; }; psychometric = derive2 { name="psychometric"; version="2.4"; sha256="1mlggzw80pb7kfykva1s4ic726l8dckrgik2519njh32ycvk9x1s"; depends=[dplyr multilevel nlme purrr]; }; psychomix = derive2 { name="psychomix"; version="1.1-8"; sha256="0lfhfcmrk65gkr1yp317b515vmadbcf0vjcnc76d07yp6yfkz5qw"; depends=[flexmix Formula lattice modeltools psychotools]; }; - psychonetrics = derive2 { name="psychonetrics"; version="0.11.5"; sha256="0syfnjmkwlzfjpl6wpqrbrww1wmddj0l9vwjll1mg0v3as69m28b"; depends=[abind combinat corpcor dplyr GA glasso IsingSampler lavaan magrittr Matrix mgcv numDeriv optimx pbapply pbv psych qgraph Rcpp RcppArmadillo rlang roptim tidyr VCA]; }; - psychotools = derive2 { name="psychotools"; version="0.7-3"; sha256="1yl5b3ws95c80gwjxdrcqj5pv7k3vf6ixb390xc758hz0b4gawqx"; depends=[]; }; - psychotree = derive2 { name="psychotree"; version="0.16-0"; sha256="1mk747m37yhhgvwikc88s0m86rgwbzkkv797jwxfpk8fsd79xqc8"; depends=[Formula partykit psychotools]; }; + psychonetrics = derive2 { name="psychonetrics"; version="0.12"; sha256="0kpfkn1sy773vafh7jxbdmcawyssl7lkvr8bg0wr864dq6j1jjbc"; depends=[abind combinat corpcor dplyr GA glasso IsingSampler lavaan magrittr Matrix mgcv numDeriv optimx pbapply pbv psych qgraph Rcpp RcppArmadillo rlang roptim tidyr VCA]; }; + psychotools = derive2 { name="psychotools"; version="0.7-4"; sha256="197hym0fxfsyg6kf0pf9g5wbsa1kkicd4lqrxfy2g3c7aczad9zy"; depends=[]; }; + psychotree = derive2 { name="psychotree"; version="0.16-1"; sha256="04ipl6kadfvyl28wx8jbpisb4pcswrwq1qiqm90h47ldbnmha932"; depends=[Formula partykit psychotools]; }; psychrolib = derive2 { name="psychrolib"; version="2.5.2"; sha256="0d43zhpl5ik90hqpdy62x7rwmxag3z1mdrn3cl1whr04rmymhk20"; depends=[Rcpp]; }; psymetadata = derive2 { name="psymetadata"; version="1.0.1"; sha256="1m1b1fhiv31hjc7iy20c065w25mgzmsbp0vlh2vlzrlqmfw0qpwv"; depends=[Rdpack]; }; psyntur = derive2 { name="psyntur"; version="0.1.0"; sha256="0dh7vdj3ynsxibcf0wmh5h4yknijg78azjzlma25glihpgd2nbbw"; depends=[dplyr effsize ez fastDummies formula_tools GGally ggplot2 ggthemes magrittr plyr psych purrr rlang tidyr tidyselect]; }; psyphy = derive2 { name="psyphy"; version="0.3"; sha256="0s3bdzbjbdapfgg44qlk4dp2m3h3hhcqy93vh32170rzkxj82p4p"; depends=[]; }; psyverse = derive2 { name="psyverse"; version="0.2.6"; sha256="1ry7n2nsj3vq8j5f10iqcldg3bas9mr1995d7hm1ih6dc4gbg934"; depends=[yaml yum]; }; ptable = derive2 { name="ptable"; version="1.0.0"; sha256="142nw1rq9nm9fc6amcsdfy4qnv89p5yz90cxxbw1r4bylm86grs2"; depends=[data_table flexdashboard ggplot2 nloptr RColorBrewer rlang rmarkdown]; }; - ptest = derive2 { name="ptest"; version="1.0-8"; sha256="1d30a23yknf7xgqj8adgr36pnh9dpffl1v5fq682f26fk3ss30qp"; depends=[quantreg]; }; ptinpoly = derive2 { name="ptinpoly"; version="2.8"; sha256="126chp92ha48agx5i819bzdij79zbgj32msijvaid3zhxjx7qy1j"; depends=[misc3d]; }; - ptm = derive2 { name="ptm"; version="0.2.6"; sha256="1ibkl9nz58nh52vyc18m1j8h0ackfc50ay6rd5dw33rrl0wiw1cp"; depends=[bio3d Biostrings curl httr igraph jsonlite muscle RCurl seqinr xml2]; }; + ptm = derive2 { name="ptm"; version="1.0.1"; sha256="1g5yfck6dnlb5bc3cqjch9x7k9z4p84q84nnakjnf56c3ddvwrjr"; depends=[bio3d curl httr jsonlite]; }; ptmixed = derive2 { name="ptmixed"; version="1.1.3"; sha256="1wdasnmddb2k8n7vzsjqw6kjg6hgh8bjn6m8fgrhxdrpp2pgrqx4"; depends=[GLMMadaptive lme4 matrixcalc moments mvtnorm numDeriv tweeDEseq]; }; ptools = derive2 { name="ptools"; version="2.0.0"; sha256="12k47f2nwf5r0d4r1n3qksdsd1gk3ax519hqz6803hynwlcqx2a3"; depends=[igraph partitions RANN raster sf sp spatstat_geom spatstat_utils]; }; ptspotter = derive2 { name="ptspotter"; version="1.0.2"; sha256="0mw9s2h6bhyjrcw9f0ayzcwg30inwyr7dqfk43qc24ppkclh85wh"; depends=[beepr log4r pryr stringr this_path]; }; @@ -15980,16 +16240,16 @@ in with self; { public_ctn0094data = derive2 { name="public.ctn0094data"; version="1.0.6"; sha256="105v4if9fqbqfrgkvcc6ws2cggn67fp3nh9y41absd7jvmzsb49h"; depends=[]; }; public_ctn0094extra = derive2 { name="public.ctn0094extra"; version="1.0.4"; sha256="0zmf0nx6skzpbdy8niqm2d7an1q4wy6y30wim53i18mzpm84wys4"; depends=[dplyr magrittr public_ctn0094data purrr tibble tidyr]; }; publipha = derive2 { name="publipha"; version="0.1.2"; sha256="03fpwxh5fyiq84wvmp5yyvsvqnznxyc4ncffn0nfhdnj5giymqvh"; depends=[BH loo Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders truncnorm]; }; - pubmed_mineR = derive2 { name="pubmed.mineR"; version="1.0.19"; sha256="0yh4gjhh7nw5vh3ksay2z5pgskmasbagzbgb3bfxch9b6arv6kgc"; depends=[boot R2HTML RCurl RJSONIO XML]; }; + pubmed_mineR = derive2 { name="pubmed.mineR"; version="1.0.20"; sha256="0apmdrn5bdis55d73j8xgfvv4x54fplmny5c28y5pwa262kchbid"; depends=[boot R2HTML RCurl RJSONIO XML]; }; pubmedR = derive2 { name="pubmedR"; version="0.0.3"; sha256="153br94iqayrvvgzrzx0r3ilcrmnznfdnzk8yaii01s8i1g1wxcd"; depends=[rentrez XML]; }; pubmedtk = derive2 { name="pubmedtk"; version="1.0.4"; sha256="176idn5q7aac9bsvw0qbxq8qdx9axg5prsvv2rjrwx6hhf2gz20a"; depends=[assertthat dplyr httr jsonlite magrittr rlang stringr xml2]; }; pubtatordb = derive2 { name="pubtatordb"; version="0.1.4"; sha256="0i5azbf75bwxxzpsr5fc2hh22pbwix00hz9dcdpn5jgp2957f7wx"; depends=[assertthat DBI dplyr R_utils readr RSQLite]; }; pullword = derive2 { name="pullword"; version="0.3"; sha256="125d091ba9h8h61y0m1bnflklmz898sp9w6ibca50vwz3d2qy5rz"; depends=[RCurl]; }; puls = derive2 { name="puls"; version="0.1.2"; sha256="0cdgcm4fvakk2mdjmlsnin3d0bf56wrm23p9f4bhh5j1ib68lsh5"; depends=[cluster dplyr fda fda_usc ggplot2 monoClust purrr rlang tibble tidyr]; }; pulsar = derive2 { name="pulsar"; version="0.3.11"; sha256="14wkqxgi8vi5szd01j5q5vis07zav22wljy32g3vljxyn8jyz0pf"; depends=[Matrix]; }; - pulseTD = derive2 { name="pulseTD"; version="0.1.0"; sha256="0sdnswinpnm0vvplrh5gl9gx4p03dx175mqxzg5r52rkzd3rfbsr"; depends=[AnnotationDbi Biobase GenomicAlignments GenomicFeatures ggplot2 Rsamtools S4Vectors SummarizedExperiment]; }; pumilioR = derive2 { name="pumilioR"; version="1.3.1"; sha256="1791r5lkr6hafd2rz9f9nfy5vc03c4833f292khvd2cg43sb0bfc"; depends=[RCurl XML]; }; puniform = derive2 { name="puniform"; version="0.2.7"; sha256="15q5wlcps7387rjz7p1f5kifg1fl5yxxy7gjx6fvspvqwjkjbs4z"; depends=[ADGofTest metafor numDeriv Rcpp RcppArmadillo]; }; + puremoe = derive2 { name="puremoe"; version="1.0.1"; sha256="18sjbsaljhwzmw2sbmb5hb9w9s3i3qfppizk74fpqnm720rbcfd1"; depends=[curl data_table httr jsonlite pbapply rappdirs rentrez textshape xml2]; }; pureseqtmr = derive2 { name="pureseqtmr"; version="1.4"; sha256="105v0ydl458xzgkdas7m8llf0672s9klv816sjl27dy0a3k8163f"; depends=[data_table devtools dplyr ggplot2 Peptides plyr rappdirs Rcpp readr stringr tibble]; }; purge = derive2 { name="purge"; version="0.2.1"; sha256="1faf8mkaxsnj63wnig5rs50hd3j6vzaj0xkdz8kn0j7y2vvshp9p"; depends=[]; }; purgeR = derive2 { name="purgeR"; version="1.8.2"; sha256="0w3mcij7q5aqbs5phiyqprgr3hvs77fnjmbayp2rwn9qm1sx160a"; depends=[doSNOW foreach progress Rcpp RcppProgress]; }; @@ -16021,16 +16281,17 @@ in with self; { pwt9 = derive2 { name="pwt9"; version="9.1-0"; sha256="0m2df89lali9945avcv4gdjpxch9in7vdd042nx0q8nv0alb4ijd"; depends=[]; }; pxR = derive2 { name="pxR"; version="0.42.7"; sha256="05i1cg35hq0z37xnh2qfcp8mnrphadrg7av5d0mcgi9nx6c1w80j"; depends=[plyr reshape2 RJSONIO stringr]; }; pxweb = derive2 { name="pxweb"; version="0.17.0"; sha256="10c3cdlgjkp0bfr6xdn5h1221krv4c4i1j4mgbh38ykrzrm4d6am"; depends=[checkmate curl httr jsonlite]; }; - pyMTurkR = derive2 { name="pyMTurkR"; version="1.1.5"; sha256="1b1cbvjbnvw2h8l3lbm0ma80zgpm212wzfhyyr6dr115k237xy89"; depends=[curl reticulate XML]; }; + pyMTurkR = derive2 { name="pyMTurkR"; version="1.1.6"; sha256="16a16rjm71xlv57lkw0w49cv563pg1b8ihligmacrnv9vmzv0843"; depends=[curl reticulate XML]; }; pycno = derive2 { name="pycno"; version="1.4"; sha256="1df7fbizm8r705dddb9xhypf39i6avsn5gpq0r7jx07nv1gmbmbw"; depends=[sf sp]; }; pyinit = derive2 { name="pyinit"; version="1.1.3"; sha256="0cbwip549d17ysbk4lrvn6a25vfjjnimjsd5myvnbvg8c9nq5ryn"; depends=[robustbase]; }; pylintR = derive2 { name="pylintR"; version="0.1.0"; sha256="00k9p3igdxhyx353gq8j9mnhrs9fh0j4q2iqa2ljfjdsdw1r2asr"; depends=[fansi htmlwidgets rstudioapi]; }; pyramid = derive2 { name="pyramid"; version="1.5"; sha256="0lakn9knmhqvhrp98sc3hhwd4bilpplxbr5j9bv8w6li0qd3d04a"; depends=[]; }; pysd2r = derive2 { name="pysd2r"; version="0.1.0"; sha256="1dqvgdxj6m683wkjyjhv685xnhl9328bm921zphm1i9p70fahs0n"; depends=[knitr reticulate tibble]; }; - pysparklyr = derive2 { name="pysparklyr"; version="0.1.3"; sha256="13y0a9sxsfj5zn83k5583wsbpz12s583p3zxdm0q3jg8zr76yci2"; depends=[cli DBI dbplyr dplyr fs glue httr2 magrittr processx purrr reticulate rlang rsconnect rstudioapi sparklyr tidyr tidyselect vctrs]; }; + pysparklyr = derive2 { name="pysparklyr"; version="0.1.4"; sha256="1qya9v6hh2jrsxihz87yk2sxhyp7mcnjl4invv7n5awq9ljz946l"; depends=[cli DBI dbplyr dplyr fs glue httr2 magrittr processx purrr reticulate rlang rsconnect rstudioapi sparklyr tidyr tidyselect vctrs]; }; pzfx = derive2 { name="pzfx"; version="0.3.0"; sha256="0f8bvwnk44wq8j58rw80b9bclknrh4a3iqdl3p4y26q100cpisgr"; depends=[xml2]; }; qCBA = derive2 { name="qCBA"; version="0.5.1"; sha256="1r9khpmdxjcnlbx4ccg26vsyp3wdc06bvlx9yl9zm4kwfi68aj9y"; depends=[arc arules rJava]; }; qGaussian = derive2 { name="qGaussian"; version="0.1.8"; sha256="02xy35xg4swr1ldnsbywnz2h0ga1pbsivnj0aqmpll7kvwl9qz4c"; depends=[Rcpp robustbase zipfR]; }; + qMRI = derive2 { name="qMRI"; version="1.2.7.6"; sha256="0mbxgg80p159vkz05hbzvvip7h5y5rpvjrjnq1vivz855dk0053g"; depends=[adimpro aws awsMethods oro_nifti stringr]; }; qPCRhelper = derive2 { name="qPCRhelper"; version="0.1.0"; sha256="0v1d4k2v2sgcy0xh2vq21yv9sw71bj44rc273g9ggg214zqdprxd"; depends=[dplyr ggplot2 ggpubr magrittr rstatix]; }; qPCRtools = derive2 { name="qPCRtools"; version="1.0.1"; sha256="1m9niwqva1b7spkk8xn4n6f7xnfv9zmh1ardahaq10wr7c0x11sy"; depends=[broom dplyr ggplot2 ggpmisc ggthemes kableExtra magrittr multcomp rstatix tibble tidyr]; }; qacBase = derive2 { name="qacBase"; version="1.0.3"; sha256="0rmxmaaa162w1qrbkcm2fd2rnrp2kqjjh6mpszpv1lpfdaq7p4yq"; depends=[crayon dplyr ggcorrplot ggExtra ggplot2 haven multcompView patchwork PMCMRplus purrr rlang tidyr]; }; @@ -16045,7 +16306,7 @@ in with self; { qcauchyreg = derive2 { name="qcauchyreg"; version="1.0"; sha256="1jry8xg6q4d9bxznrw8jxlbivnf5y944xdzv320fv4milk22g30x"; depends=[quantreg]; }; qcc = derive2 { name="qcc"; version="2.7"; sha256="0lc26w7p3d023lfr8v6v75m2vwqg9vi9pdipap19l4vbdq29l4zz"; depends=[MASS]; }; qccrs = derive2 { name="qccrs"; version="0.1.0"; sha256="0lwrmf2809zzdj5f25bb1psh57ibyw90ra41fy2i9vjmgph9wgiq"; depends=[dplyr magrittr purrr tibble]; }; - qch = derive2 { name="qch"; version="1.0.0"; sha256="1kizr319kjr6xsgz7n0dhgp8rxr4j1x4bcr5cnifkp6z2zh92vka"; depends=[ks mclust]; }; + qch = derive2 { name="qch"; version="2.0.0"; sha256="1d2mcyzfnpmr4pv036crhsc91gypj0jrn6hmd9jcnm49khqc0lan"; depends=[copula dplyr ks purrr qvalue Rcpp RcppArmadillo stringr]; }; qcpm = derive2 { name="qcpm"; version="0.3"; sha256="0yjqbhazmdgw08yn1r8pxafgwxzhb76nmxzb8k68risd2r49jikj"; depends=[broom cSEM quantreg]; }; qcr = derive2 { name="qcr"; version="1.4"; sha256="14nilw60p2kcabh9w5k8bvdjqx4lm5lj79qiigg3i372byq5gb7r"; depends=[fda_usc MASS mvtnorm qcc]; }; qcv = derive2 { name="qcv"; version="1.0"; sha256="0hf02l9c1cpzs02mfn9swfc8l635qsvh6xrhj21g19h5rxaf8jwg"; depends=[]; }; @@ -16065,23 +16326,25 @@ in with self; { qgisprocess = derive2 { name="qgisprocess"; version="0.3.0"; sha256="0l7696hl728vcjapsczkj3lvip23b1n22skk6cinwkjb8hyc7h9y"; depends=[assertthat glue jsonlite processx rappdirs rlang stringr tibble vctrs withr]; }; qgraph = derive2 { name="qgraph"; version="1.9.8"; sha256="1m019j5nxc0184p0r2zgdn457g555nxsp2s08maa053nydj1va0l"; depends=[abind colorspace corpcor fdrtool ggplot2 glasso gtools Hmisc igraph jpeg lavaan Matrix pbapply plyr png psych Rcpp reshape2]; }; qgshiny = derive2 { name="qgshiny"; version="0.1.0"; sha256="0ydhwg4abn8n9pwnjnwf1n1k854zw31z8f2splzdm5j279lsjg3r"; depends=[rmarkdown shiny]; }; - qgtools = derive2 { name="qgtools"; version="2.0"; sha256="1gj7vbam53yr2rnxzfxng1p107bjcyjmyj47cxyzaiv19pznkbmw"; depends=[]; }; qicharts = derive2 { name="qicharts"; version="0.5.8"; sha256="1n8jvb9dfb2k60zi9z99sncpwqbbj0h8zngmqq2k795zpa79gf1d"; depends=[ggplot2 lattice latticeExtra scales]; }; - qicharts2 = derive2 { name="qicharts2"; version="0.7.4"; sha256="147wzp1n55nrmrjzkzflrz1g2r4iif5nyncjlmcp9zk22qx1kl05"; depends=[ggplot2 scales]; }; + qicharts2 = derive2 { name="qicharts2"; version="0.7.5"; sha256="12r191bb1fri33h5lcb8lcpzv0f916a8x36fg87i31zh6id94vyc"; depends=[ggplot2 scales]; }; qif = derive2 { name="qif"; version="1.5"; sha256="12azs7c0anpd71d5663y1jrhirry6cr78wislp4fk64hmsbx7sx4"; depends=[MASS]; }; qiitr = derive2 { name="qiitr"; version="0.1.1"; sha256="0qbqx7g4np2ygyxiqmq5cww1az6ijjx6na6b1mp4ywmyxkjg3k29"; depends=[httr jsonlite purrr rstudioapi]; }; qkerntool = derive2 { name="qkerntool"; version="1.19"; sha256="14inry2hqvkmy0y2y3cl75ri4vri0hirv98gw2rymny69lia5x0s"; depends=[class]; }; - qlcal = derive2 { name="qlcal"; version="0.0.10"; sha256="1kw1xgxkzvjwdk4wg8h9r0kd31d6vwrblhxgysz5d490q80np6sr"; depends=[BH Rcpp]; }; + qlcData = derive2 { name="qlcData"; version="0.3"; sha256="0zwmp5567v7mzjki8sf0xc7vzzyb3bfsnmr2liak5j2a7dsp81hb"; depends=[ape data_tree docopt phytools shiny stringi yaml]; }; + qlcMatrix = derive2 { name="qlcMatrix"; version="0.9.8"; sha256="0d38jb653787s05g8syc9wgaljaifmkviijwz5rzcd881glgs8sv"; depends=[docopt Matrix slam sparsesvd]; }; + qlcVisualize = derive2 { name="qlcVisualize"; version="0.3"; sha256="0njckbdrvzjlmdxmdygcxh6zc30r0gcna5i8jyr1cibmckcbl96h"; depends=[alphahull cartogramR concaveman fields geodata mapplots maps MASS qlcMatrix RSpectra seriation sf sp spatstat_geom spatstat_random]; }; + qlcal = derive2 { name="qlcal"; version="0.0.11"; sha256="0r40vjnp8aqsdd6wznaff6awadcm64j0am5nln564zw8g8amwl6l"; depends=[BH Rcpp]; }; qlifetable = derive2 { name="qlifetable"; version="0.0.2-4"; sha256="01p5gkadmfw2hc9h1gdg88k2g7rq204km9ncldmpf10vnglpiww0"; depends=[]; }; qmap = derive2 { name="qmap"; version="1.0-4"; sha256="02xvq1mw83gln7phacbi3vhkvb100crggbldv13mhwq3wjnmg5k2"; depends=[fitdistrplus]; }; qmd = derive2 { name="qmd"; version="1.1.2"; sha256="15y1bivli3jy09l4j37zp327x1nchkg6qm8hs46srcxznh9zb99d"; depends=[cowplot dplyr ggplot2 qad Rcpp]; }; qmethod = derive2 { name="qmethod"; version="1.8.4"; sha256="0smkqqq8pcxix4lf35skkf9p5jw9mc3llkmyr334qkk85kvgnwn6"; depends=[digest knitr psych xtable]; }; qmrparser = derive2 { name="qmrparser"; version="0.1.6"; sha256="0d17b64gzf5xlhc5z8qxjj759c1paiv8kxikk2r6ph6zfwvvxw0y"; depends=[]; }; qmvs = derive2 { name="qmvs"; version="0.2.0"; sha256="0mmz0f62n5yip3h7knagc3rp7kb5jyfr9a24ih6knya5lri5d70h"; depends=[]; }; - qoi = derive2 { name="qoi"; version="0.0.4"; sha256="0sdarr3f6by3kgaq7302kwkgv0vcy4q0mkprdlawkybaafzlzb9x"; depends=[]; }; + qoi = derive2 { name="qoi"; version="0.1.0"; sha256="1zia8k95lmxpqfpkci6kln5d8n86fnnahyb8xd52ivqglifv5g56"; depends=[]; }; qpNCA = derive2 { name="qpNCA"; version="1.1.6"; sha256="1mlv9yc929w8ypfzhfplhjbxxj1qdx4v9gh6dr68lylvm9ahx032"; depends=[dplyr ggplot2 knitr magrittr tidyr]; }; qpcR = derive2 { name="qpcR"; version="1.4-1"; sha256="1r01q7jv3w59yx1gc0qw91rq7rvdhqsi8y57sqqkmwyqfw2x2vsv"; depends=[MASS Matrix minpack_lm rgl robustbase]; }; - qpdf = derive2 { name="qpdf"; version="1.3.2"; sha256="0xp9x11jpih59s0skfswi5chmv1p8zhz4f66w0nxfx4jhyj0bjfr"; depends=[askpass curl Rcpp]; }; + qpdf = derive2 { name="qpdf"; version="1.3.3"; sha256="0lzyc1g7q809h047il5nkizv124j13m1zf3j32in0gx7dyz10mj1"; depends=[askpass curl Rcpp]; }; qpmadr = derive2 { name="qpmadr"; version="1.1.0-0"; sha256="0krv3zhr42z2mkkbn2bkglzfxbf06dmd9vnnc3rcyhm1r85n4fbq"; depends=[checkmate Rcpp RcppEigen]; }; qqboxplot = derive2 { name="qqboxplot"; version="0.3.0"; sha256="1rsipw7cn2gqpqpa0ysj99ms5jpnbynjs4gkkmbr2w0c2466fhgx"; depends=[ggplot2]; }; qqconf = derive2 { name="qqconf"; version="1.3.2"; sha256="18wfvljd6gbf9am3hh14fgp06gpa04vw9nhl7q07li7rmlkxc1cl"; depends=[MASS Rcpp robustbase]; }; @@ -16096,7 +16359,7 @@ in with self; { qrcmNP = derive2 { name="qrcmNP"; version="0.2.1"; sha256="10yqksn9761fryjvx6srv2z1pzmlr5m69bch16j256j9k2lknsr4"; depends=[qrcm survival]; }; qrcode = derive2 { name="qrcode"; version="0.2.2"; sha256="07dkvga60532ngqg77icdfzv1wmx1qdn02js7pwyjf55xgim3fvn"; depends=[assertthat]; }; qrencoder = derive2 { name="qrencoder"; version="0.1.0"; sha256="1lg60lg2fiqdw0m228i8pln2p0kqp9f21qmrx6r6rwxifvwlfhv8"; depends=[base64enc png raster Rcpp]; }; - qreport = derive2 { name="qreport"; version="1.0-0"; sha256="06ycxcs9kkx3m9f74bjvlj84jjp60wd0hjd40mgpir2559hqmqnb"; depends=[data_table Formula ggplot2 Hmisc htmltools knitr rms viridis]; }; + qreport = derive2 { name="qreport"; version="1.0-1"; sha256="1d3dlpcf6w4bj6bwmydr3rlnscfdqyad6j2cm1rda7565q7k9iyf"; depends=[data_table Formula ggplot2 Hmisc htmltools knitr rms viridis]; }; qris = derive2 { name="qris"; version="1.1.1"; sha256="0nx4x4ywgwg55fpv9cr30r09in4rzm6070fm0g88qpvgvrihs9a6"; depends=[ggplot2 nleqslv quantreg Rcpp RcppArmadillo stringr survival]; }; qrjoint = derive2 { name="qrjoint"; version="2.0-9"; sha256="0dvz5adawy143r0ddgrblzac76igwmngnblr6vq57sxlvj1nsm7h"; depends=[coda kernlab Matrix quantreg]; }; qrlabelr = derive2 { name="qrlabelr"; version="0.2.0"; sha256="1bv76d3fkficcaqg4kzkkxjq1p24c6hxd25jyfia96nkmxyds44m"; depends=[argonDash argonR assertthat bslib desplot dplyr ggplot2 purrr QBMS qrencoder raster reactable readxl shiny shinyBS shinycssloaders shinyjs shinyWidgets uuid]; }; @@ -16105,30 +16368,34 @@ in with self; { qrmtools = derive2 { name="qrmtools"; version="0.0-17"; sha256="1vv9y6mmvqnlimghw3dl873r4l47imwcp2x58yzrn53fa2y7b6mi"; depends=[ADGofTest lattice Quandl quantmod rugarch xts zoo]; }; qrng = derive2 { name="qrng"; version="0.0-10"; sha256="0j46rlxyfahz271hckcr42i437n0vc77bvg5p1fi5zb6pywlxvji"; depends=[]; }; qrnn = derive2 { name="qrnn"; version="2.1.1"; sha256="1jacj0ybcbfhll5nvx31h00jm1rlcyzw3kcbxffrmpa9hd1spxql"; depends=[]; }; - qs = derive2 { name="qs"; version="0.26.1"; sha256="0qmgnc4igy8mjzarm30cgi4z75hh8f01kvcs6n6s63cy4qk30vs6"; depends=[BH RApiSerialize Rcpp stringfish]; }; + qs = derive2 { name="qs"; version="0.26.3"; sha256="1qqy6aada9jkq0z6bmzb5vhb18cdxvy7b6nwjd8saqaidqgs80c8"; depends=[BH RApiSerialize Rcpp stringfish]; }; qsimulatR = derive2 { name="qsimulatR"; version="1.1.1"; sha256="00022yyfwpv7f28isbnqy8001nm6xvxnfb2sbjckl8vbv0sjvs9n"; depends=[]; }; + qslice = derive2 { name="qslice"; version="0.3.1"; sha256="0df8988pr0kcz8xdi8sgl99mifs8djzjrannx52n42yck58g5hky"; depends=[]; }; qsort = derive2 { name="qsort"; version="0.2.3"; sha256="1xvp29dijfa2207wyw3z09rmffn61fngfy0f00qjk284n1jnnvrg"; depends=[cowplot ggplot2 gridExtra purrr]; }; qsplines = derive2 { name="qsplines"; version="1.0.1"; sha256="0zln3w2qx8ck9631hkq8ig5bc2l55wg5mdp3i0fm9amg8mhzq37i"; depends=[BH onion Rcpp shiny]; }; - qspray = derive2 { name="qspray"; version="2.1.1"; sha256="164ls4a4cij7szbi6jwia2021cgrv4zjhmamslyhnfymdj2nz051"; depends=[BH DescTools gmp purrr RationalMatrix Rcpp RcppArmadillo Ryacas]; }; + qspray = derive2 { name="qspray"; version="3.0.0"; sha256="1vxs8z6whl5a829nk4cjljl47722nzgi8pl0wfhry1skans6gbkq"; depends=[BH DescTools gmp partitions purrr RationalMatrix Rcpp RcppArmadillo Ryacas]; }; qst = derive2 { name="qst"; version="0.1.2"; sha256="0f5c4088y9c5fxyy2dyfkp049lnzvys3zyizazxsa82xwkwsbc8a"; depends=[DBI dbplyr dplyr magrittr RSQLite tibble]; }; qsub = derive2 { name="qsub"; version="1.1.3"; sha256="0ygys183pj420jr9bz13x009qis3qr1aqxgw3l2d4xx3xv90iy3g"; depends=[dplyr glue pbapply processx purrr random readr ssh stringr tidyr]; }; qte = derive2 { name="qte"; version="1.3.1"; sha256="1hz3rwsi3w2b1xjigf5s3866djcxdkjz7jwcz0rin22v5h6sql80"; depends=[BMisc data_table formula_tools ggplot2 Hmisc pbapply quantreg texreg]; }; qtl = derive2 { name="qtl"; version="1.66"; sha256="10fnc3ms97rdqsqxz5jpvg2cmrwmz69wjxxs3h65r1yhy94pssnl"; depends=[]; }; - qtl2 = derive2 { name="qtl2"; version="0.34"; sha256="1h3wim850b2xk09z9vgnyfp20k7vg94zf7szcrlw5nf1w9gn4wzy"; depends=[data_table jsonlite Rcpp RcppEigen RSQLite yaml]; }; - qtl2convert = derive2 { name="qtl2convert"; version="0.28"; sha256="06703m9mkpc77agkmikr9bhr4ag1z161k8pq8l1i562mkd0qlgs8"; depends=[qtl qtl2 Rcpp]; }; + qtl2 = derive2 { name="qtl2"; version="0.36"; sha256="0sy4j3f1dw7w7qcp3lsc5mmd8kwa5qaxcl8c4236a8zbzkvvnp5j"; depends=[data_table jsonlite Rcpp RcppEigen RSQLite yaml]; }; + qtl2convert = derive2 { name="qtl2convert"; version="0.30"; sha256="1rpg74gblh30qy0byxvyhlrimcgx7ml5jn7dxs032my7pa58mspf"; depends=[qtl qtl2 Rcpp]; }; qtl2fst = derive2 { name="qtl2fst"; version="0.26"; sha256="0wpqpmj752pwjgghv7b30r69nc950h5fnsszsj142p7vws7ss8j9"; depends=[fst qtl2]; }; qtl2ggplot = derive2 { name="qtl2ggplot"; version="1.2.4"; sha256="0ygadcm05fqkpa8j2h6rpcxpd287g2av7qnlwlqp1s86zfxshk96"; depends=[assertthat dplyr ggplot2 ggrepel purrr qtl2 RColorBrewer Rcpp rlang stringr tidyr]; }; qtl2pattern = derive2 { name="qtl2pattern"; version="1.2.1"; sha256="12ysbqcf7bq1ibdyznlzc3kg71k7vd6cgy9xgmmhmdv8hkhdlf26"; depends=[assertthat dplyr fst ggplot2 qtl2 qtl2fst rlang stringr tidyr]; }; qtl2pleio = derive2 { name="qtl2pleio"; version="1.4.3"; sha256="0az71vgj1gv7rfz0hnc9rysh49ak2pnkvmih5mwmymr4an84c34k"; depends=[dplyr gemma2 ggplot2 magrittr MASS Rcpp RcppEigen rlang tibble]; }; + qtlDesign = derive2 { name="qtlDesign"; version="0.953"; sha256="1lgdmkvmakad7w40pm79gdas1zraz2rcymdsysas0hyfvwxyly95"; depends=[]; }; qtlbook = derive2 { name="qtlbook"; version="0.18-8"; sha256="1c849xy2ki7niddajv5wnsm0zdp5381w8zm9lc8rvkdbs2v6rhf4"; depends=[]; }; qtlc = derive2 { name="qtlc"; version="1.0"; sha256="17ij4alx4qg556b5kq7qsjygj5jf8iyx1f0v52pvx1z2sm6nppww"; depends=[plot3D rgl tiff]; }; qtlcharts = derive2 { name="qtlcharts"; version="0.16"; sha256="1bf7cdcbbxblsx357pymq54yr4aa7iaxpq4f73nbxdal9nbcqkda"; depends=[htmlwidgets qtl]; }; qtlhot = derive2 { name="qtlhot"; version="1.0.4"; sha256="0gf0fsq91g830vqg5kz01zznm40qpjncy964ccvmms3i6d3hxd9m"; depends=[corpcor mnormt qtl]; }; qtlmt = derive2 { name="qtlmt"; version="0.1-6"; sha256="023h60z8d05832l2g7mg776hfjb0i7xpvhz3i899rc3h5pgjd94c"; depends=[]; }; qtlnet = derive2 { name="qtlnet"; version="1.5.4"; sha256="0jdf3hyzas0lyv2v4gqai9mhh7218a1mvm0nlwv9hfdbij0hi84v"; depends=[graph igraph pcalg qtl sem]; }; + qtlpoly = derive2 { name="qtlpoly"; version="0.2.4"; sha256="1lcfb19akddxljwvgsryjvhks0lqkdg7f1br1l2szd6qyd4mmdvs"; depends=[abind CompQuadForm doParallel foreach ggplot2 gtools mappoly MASS Matrix mvtnorm nlme quadprog Rcpp RcppArmadillo RcppProgress RLRsim]; }; qtwAcademic = derive2 { name="qtwAcademic"; version="2022.12.13"; sha256="1llckj25x2wr3g3wa1m43fqa6v9ddyf444wbwwjdfwc9ix9j5fkj"; depends=[fs]; }; quRan = derive2 { name="quRan"; version="0.1.0"; sha256="108d797l9ggggc5b61pl7f6avzknmnnib2ys5vrg385zfbx9srvw"; depends=[]; }; quadcleanR = derive2 { name="quadcleanR"; version="1.1.0"; sha256="1kiadc6wwq89yb6pdld646afqhh7i3xs1f667vab3svygfqn670x"; depends=[magrittr]; }; + quadform = derive2 { name="quadform"; version="0.0-2"; sha256="0w01v688xfb9zl7yr2prr9hwpylbx2cc8qwidxkzyzxzk21ywdn3"; depends=[mathjaxr]; }; quadmatrix = derive2 { name="quadmatrix"; version="0.1.0"; sha256="0nngrvvbalmrr6g9bq9f5qrllvwfq5p1b9yhs4zb098s3wga8jms"; depends=[geigen matrixcalc]; }; quadmesh = derive2 { name="quadmesh"; version="0.5.5"; sha256="0af795r29976ir0ma48chmlm17001xg5wd29waz356cfhinzs2nk"; depends=[geometry gridBase palr png raster reproj scales sp]; }; quadprog = derive2 { name="quadprog"; version="1.5-8"; sha256="1ka9g8zak8sg4y2xbz93dfrldznlk9qpd4pq9z21cdcdn3b8s4i2"; depends=[]; }; @@ -16145,10 +16412,10 @@ in with self; { quantCurves = derive2 { name="quantCurves"; version="1.0.0"; sha256="0z00agd4q157cjkc4gwyfw3kka043wcf5j7yzn8cqm281fqh1jny"; depends=[KernSmooth locpol np quantreg quantregGrowth]; }; quantdates = derive2 { name="quantdates"; version="1.0"; sha256="1hyds8rwr1yg740aq4w5fqjrwdf3dl4phf8mj8qsgbb7i0wbbf3q"; depends=[lubridate]; }; quantdr = derive2 { name="quantdr"; version="1.2.2"; sha256="0w6jdd6i4wxbk4fp44rmy32mwq9ng63zwamq8zpa1hlfbm5qh4s2"; depends=[dr KernSmooth mvtnorm quantreg]; }; - quanteda = derive2 { name="quanteda"; version="3.3.1"; sha256="0rj13m0fmk0h9akmqwwp7nkwrvym7sj97jgvjr4mvi3sglq451b2"; depends=[fastmatch jsonlite magrittr Matrix Rcpp RcppArmadillo RcppParallel SnowballC stopwords stringi xml2 yaml]; }; - quanteda_textmodels = derive2 { name="quanteda.textmodels"; version="0.9.6"; sha256="1shsyz8nz8cabmsgrimxym4b0fd3zbjp3vx5si41rp9gr9c94sx1"; depends=[glmnet LiblineaR Matrix quanteda Rcpp RcppArmadillo RcppParallel RSpectra SparseM stringi]; }; + quanteda = derive2 { name="quanteda"; version="4.0.2"; sha256="1s046p3bnf36z2mqh5ijirq7jygqj5clal3r0l3f89gr0466a75j"; depends=[fastmatch jsonlite lifecycle magrittr Matrix Rcpp RcppArmadillo SnowballC stopwords stringi xml2 yaml]; }; + quanteda_textmodels = derive2 { name="quanteda.textmodels"; version="0.9.7"; sha256="0whzy9hbybxmlzkckhlp6whbbg17vskx9bk40iy02j2z6fw6bqxg"; depends=[glmnet LiblineaR Matrix quanteda Rcpp RcppArmadillo RSpectra SparseM stringi]; }; quanteda_textplots = derive2 { name="quanteda.textplots"; version="0.94.4"; sha256="0adl3dahr51f2sqdr0fng99r87pq4mknlqmhg6nfjx617rni9w2a"; depends=[extrafont ggplot2 ggrepel igraph Matrix network quanteda RColorBrewer Rcpp sna stringi]; }; - quanteda_textstats = derive2 { name="quanteda.textstats"; version="0.96.4"; sha256="0x0b3zk1lmy0mxjpfnw7nshc9vp1i45gkd53g838ks207sdr8q4l"; depends=[Matrix nsyllable proxyC quanteda Rcpp RcppArmadillo RcppParallel stringi]; }; + quanteda_textstats = derive2 { name="quanteda.textstats"; version="0.97"; sha256="0h8fyb8smyyhbfk677a2ldyl6b7sdjl0pzk5bbgz8qymw6yg1zdj"; depends=[Matrix nsyllable proxyC quanteda Rcpp RcppArmadillo stringi]; }; quantification = derive2 { name="quantification"; version="0.2.0"; sha256="116cp88q9cmizxc2a8lsysa1vwyp1y86457fx5qkq5dcm4g721g8"; depends=[car]; }; quantileDA = derive2 { name="quantileDA"; version="1.2"; sha256="136rjrim7q07pl3w76xs77nhsv7xvi8isw2924ngxmfp35hbhq16"; depends=[]; }; quantilogram = derive2 { name="quantilogram"; version="2.2.1"; sha256="0gvr93d6jjixcrislym0mna2l3plqhl8adaqiagdvxg4y0adfmf0"; depends=[np quantreg SparseM]; }; @@ -16156,29 +16423,30 @@ in with self; { quantkriging = derive2 { name="quantkriging"; version="0.1.0"; sha256="0v6kckgzhgsn3158sc06xszdhmk8sfny10j1qyppxsl2hk89n8jf"; depends=[ggplot2 hetGP Matrix reshape2]; }; quantmod = derive2 { name="quantmod"; version="0.4.26"; sha256="165vp2ygry8ibcpxjbyfvfrjbv98syln12kkyzci2ygp84r5sv1r"; depends=[curl jsonlite TTR xts zoo]; }; quantoptr = derive2 { name="quantoptr"; version="0.1.3"; sha256="0f9vy9yhya4wpya8n345s6n7a5sb29chdkl5fz6dwa31lp1mvvj3"; depends=[quantreg Rdpack rgenoud stringr]; }; - quantreg = derive2 { name="quantreg"; version="5.97"; sha256="18bdcxm2f8gc2bxdxrk80dcafl8d5snckp0913pkdsfyfrbxxrw7"; depends=[MASS Matrix MatrixModels SparseM survival]; }; + quantreg = derive2 { name="quantreg"; version="5.98"; sha256="0qbad2wzw7qvsrm821k2vr0dsx75jj3qbs2sl9k3ymngv1cv5359"; depends=[MASS Matrix MatrixModels SparseM survival]; }; quantreg_nonpar = derive2 { name="quantreg.nonpar"; version="1.0"; sha256="1f9120awnkwsgdiqg98lg7xs5l4y80930869x6k9q76595r5m92k"; depends=[fda mnormt quantreg Rearrangement]; }; quantregForest = derive2 { name="quantregForest"; version="1.3-7"; sha256="0lk7r02i6zpx9sdl2rp0r7fc3a84s8qhg49nh2x7k3vxwa095pjz"; depends=[randomForest RColorBrewer]; }; - quantregGrowth = derive2 { name="quantregGrowth"; version="1.7-0"; sha256="0as226mcchbq41wrhl3vb8j4szqvcfk9zdsnf9fnyn50ymh4c5mb"; depends=[quantreg SparseM]; }; + quantregGrowth = derive2 { name="quantregGrowth"; version="1.7-1"; sha256="07hj5kanas42kj70p03h77j5m9vnvsnsb02r31snai4smbaps4ad"; depends=[quantreg SparseM]; }; quantregRanger = derive2 { name="quantregRanger"; version="1.0"; sha256="1a9q2prr790bpw6s0y5ni5ppd3vqkjr0v4nqp6ywcj5n3sk69pvx"; depends=[ranger Rcpp]; }; quantspec = derive2 { name="quantspec"; version="1.2-3"; sha256="0ifwq2jmvxhpijz9yd9hffkff6ixcliaqkp9ispp9k1b8icwi8zn"; depends=[abind quantreg Rcpp snowfall zoo]; }; - quarks = derive2 { name="quarks"; version="1.1.3"; sha256="132ic5wr59sb89f352p7zspjx214575x45gla01dkcsimfrinjdg"; depends=[dygraphs ggplot2 progress rugarch shiny shinyjs smoots xts yfR]; }; + quarks = derive2 { name="quarks"; version="1.1.4"; sha256="0srachhn2jxyz3i7ky5hb982232xnngaq66q76ffr3p1v4yfvgw3"; depends=[dygraphs ggplot2 progress rugarch shiny shinyjs smoots xts yfR]; }; quarrint = derive2 { name="quarrint"; version="1.0.0"; sha256="13fdmmrgn23xd9vpywmcl7pf729gmcxjfl1wxs30axsbp4h1s6rk"; depends=[neuralnet]; }; quartets = derive2 { name="quartets"; version="0.1.1"; sha256="0j5qgk3ha621l3njah54rnxf12ndafcai5bdvv96n888c3yki3nd"; depends=[]; }; quarto = derive2 { name="quarto"; version="1.4"; sha256="092v5vbrqb1qbmzf0wv29lrkhcbk4nz8kz8cb27dmhx08ns7zk5c"; depends=[cli jsonlite later processx rlang rmarkdown rstudioapi yaml]; }; + quaxnat = derive2 { name="quaxnat"; version="1.0.0"; sha256="0indrll8yqj95lx3f30sic2w5730r5my44sqn59mwhgvdh5rw693"; depends=[terra]; }; queryparser = derive2 { name="queryparser"; version="0.3.2"; sha256="0va2h1midvf8adymqwg79flpqq7ciznk285kmyqdskkn87argjd2"; depends=[]; }; queryup = derive2 { name="queryup"; version="1.0.5"; sha256="0rl31vs1m7qjbix1qgmvnxrvjf2k2ikd8p9frz1yia7xxaq1m286"; depends=[httr jsonlite]; }; quest = derive2 { name="quest"; version="0.2.0"; sha256="0a3slzskacp0pj0whnnqysqiclf6fby5x81i4mjdvckidgdyjprf"; depends=[abind boot car checkmate lavaan lme4 MBESS multilevel nlme plyr psych str2str]; }; questionr = derive2 { name="questionr"; version="0.7.8"; sha256="1abbnxnmljnn6ak55l4yrihr6fwrhzsb1rd7h8r0dijjwsgyawmg"; depends=[classInt highr htmltools labelled miniUI rlang rstudioapi shiny styler]; }; queuecomputer = derive2 { name="queuecomputer"; version="1.2.0"; sha256="0qlcj4rqfkp8qanzwi1p2s7r89x5w6aa8zwkcl7rqapbd4nwayhc"; depends=[dplyr Rcpp RcppArmadillo tidyr]; }; queueing = derive2 { name="queueing"; version="0.2.12"; sha256="0hw1ykm24cjpfwh7ac7fjf7mhc59mq8wy2g07aacpy5ibwi8bbsf"; depends=[]; }; - quhomology = derive2 { name="quhomology"; version="1.1.1"; sha256="0wiih00zk4682wy1r4nyifh76h5bnvl3f785wjzmrwylnfy951l3"; depends=[MASS numbers]; }; quickNmix = derive2 { name="quickNmix"; version="1.1.1"; sha256="01gnvnpfxry354qf772m187mfvjigqngjpi1k9y1g5nvlv7a4d62"; depends=[doParallel foreach optimParallel]; }; + quickPWCR = derive2 { name="quickPWCR"; version="1.0"; sha256="1igxjrmli16lxf07xawkslb8gkas63sdpmxrl07vfwl8yq8n6wwl"; depends=[dplyr pbmcapply Rcpp]; }; quickPlot = derive2 { name="quickPlot"; version="1.0.2"; sha256="0228mcv6cz74whzxmgcdb79w0k8mibszw4kwnjjs6pljz41rxcbq"; depends=[data_table fpCompare terra]; }; quickReg = derive2 { name="quickReg"; version="1.5.0"; sha256="1l1v3k8albxlaz18l2b2x2ryifq4pbdq6n4q7555hnfcik9rqmw5"; depends=[dplyr ggplot2 nortest psych rlang survival]; }; quickblock = derive2 { name="quickblock"; version="0.2.1"; sha256="1pl3cwb4byz3b4s08rahk20ckkwrl977qr4a7cw0pd09qm0qgcq3"; depends=[distances scclust]; }; quickcheck = derive2 { name="quickcheck"; version="0.1.3"; sha256="0rm3pvhyqg1px8fp31cmbmv0zk9mvqhzl8qx9gm51kih2zfrksqy"; depends=[data_table hedgehog hms magrittr purrr testthat tibble]; }; - quickcode = derive2 { name="quickcode"; version="0.7"; sha256="1v3vipcxzvz8radbkj7rq8v4l4pmx38cyyz5a042k2v7fzj24bw3"; depends=[Polychrome rstudioapi]; }; + quickcode = derive2 { name="quickcode"; version="0.8"; sha256="04v95f8ppxqiyqi42z8lrgcygdfc9vb3zk30824jh83vwba9h2y8"; depends=[fitdistrplus Polychrome rstudioapi]; }; quickmatch = derive2 { name="quickmatch"; version="0.2.2"; sha256="0y1yss83q4mpdb5ipldg2080vrnc5725452zrs89gxnsykx1qv6j"; depends=[distances sandwich scclust]; }; quickpsy = derive2 { name="quickpsy"; version="0.1.5.1"; sha256="0dfqlpghnw79idw3ir03cxx9n88sqs5p14jz7jgpkdwvjpw1y4q9"; depends=[DEoptim dplyr ggplot2 MPDiR]; }; quickregression = derive2 { name="quickregression"; version="0.2"; sha256="1z0sspi8q7dvgxqbj5na56v458pv6jhxrssnm6j23156dchgw39h"; depends=[car]; }; @@ -16191,7 +16459,6 @@ in with self; { quollr = derive2 { name="quollr"; version="0.1.1"; sha256="1qvgajd7bx38nhisb7y5i48fmw9vx6di34s08dkna34rjhafak0a"; depends=[dplyr ggplot2 interp langevitour proxy rlang rsample tibble tidyselect]; }; quoradsR = derive2 { name="quoradsR"; version="0.1.0"; sha256="1gdb5zvi7hs2mpzv07w1mbm9w4ksidbz28mjb6w20bfpy6casfz5"; depends=[jsonlite]; }; quotedargs = derive2 { name="quotedargs"; version="0.1.3"; sha256="11cswg9bmddsl1axxcdz11flq46p1zkpv022526f2vgl4qsprwbm"; depends=[]; }; - qut = derive2 { name="qut"; version="2.2"; sha256="1jsp3sv1631ar1sad8fy4l60ar2pbi20g50yz9mhs83427n3l63b"; depends=[flare glmnet lars Matrix]; }; qvcalc = derive2 { name="qvcalc"; version="1.0.3"; sha256="17sr4100ciy5jp0b8sxvqjxf4m176ayzd5yyaw40ri4xf6h0z7la"; depends=[]; }; qwalkr = derive2 { name="qwalkr"; version="0.1.0"; sha256="0mxzx782lvdrm0hx0v6xgzvw3r9zlfp9bz1vss2l59fgdqlhavn4"; depends=[lifecycle]; }; qwraps2 = derive2 { name="qwraps2"; version="0.6.0"; sha256="06i3h6ydjfvy7qrhzznsb272r843fgvykfsgaviq83gi8k5c5i00"; depends=[ggplot2 knitr Rcpp RcppArmadillo xfun]; }; @@ -16203,9 +16470,9 @@ in with self; { r2d2 = derive2 { name="r2d2"; version="1.0.1"; sha256="1956p9xr9as8v4673d6fsdyas3racfzh6a5pafqz56r8ai1ssbyq"; depends=[KernSmooth MASS sp]; }; r2d3 = derive2 { name="r2d3"; version="0.2.6"; sha256="15mphywsr0603ipbgzac65n1nj7m77fmw3ypc33p9ng4fllg035r"; depends=[htmltools htmlwidgets jsonlite rstudioapi]; }; r2dictionary = derive2 { name="r2dictionary"; version="0.2"; sha256="09xsmgb1vpqafn9z4yh64qc3gwpd1rpiyj4vpagck8779rxdkqph"; depends=[rstudioapi stringr]; }; - r2dii_analysis = derive2 { name="r2dii.analysis"; version="0.3.0"; sha256="11bhhwigybrcr8nbrdwbv6a9rk944la5apnn5y3ahvr457jqdjsv"; depends=[dplyr glue lifecycle magrittr r2dii_data rlang tidyr tidyselect zoo]; }; - r2dii_data = derive2 { name="r2dii.data"; version="0.4.1"; sha256="1sf8jyzn9ly8hn1fdph440pl666hcgpjds51h8apprqivn3ky9cv"; depends=[lifecycle]; }; - r2dii_match = derive2 { name="r2dii.match"; version="0.1.4"; sha256="1nb0yik39wdcc22c0clszg9j3xk5sm5i9rzzcyj7zij55pcak7np"; depends=[data_table dplyr glue lifecycle magrittr purrr r2dii_data rlang stringdist stringi tibble tidyr tidyselect]; }; + r2dii_analysis = derive2 { name="r2dii.analysis"; version="0.4.0"; sha256="02rawyr3z0zg2yhc04mdnjkwrczwwv2822vphwyv3vwwlayjy3fh"; depends=[dplyr glue lifecycle magrittr r2dii_data rlang tidyr tidyselect zoo]; }; + r2dii_data = derive2 { name="r2dii.data"; version="0.5.0"; sha256="1f8gvian0l3wsw9bwyxzlwv0qpw4mz1qq4747hjm8d4jr37hi0r6"; depends=[lifecycle]; }; + r2dii_match = derive2 { name="r2dii.match"; version="0.2.0"; sha256="12h7bn4dha4fiplwm7az4fyaa8cdkn3b4j3ndmwr6c2r11gfwy0n"; depends=[data_table dplyr glue lifecycle magrittr purrr r2dii_data rlang stringdist stringi tibble tidyr tidyselect]; }; r2dii_plot = derive2 { name="r2dii.plot"; version="0.4.0"; sha256="0gfqhqkp9dnzjipgzf665am9mzyv5p7l13ahcw44bpmya4zrsifg"; depends=[dplyr ggplot2 ggrepel glue magrittr r2dii_data rlang scales stringr]; }; r2fireworks = derive2 { name="r2fireworks"; version="0.1.0"; sha256="1kifyr4g92ca7n432jwi5x5qigikvka40k54xb6s8w5fjgfv7g9b"; depends=[htmltools shiny]; }; r2glmm = derive2 { name="r2glmm"; version="0.1.2"; sha256="0iim92blpa59vgz97c2pi05yhbjjmaffdbkbmk5kplfb2vmazgiy"; depends=[afex data_table dplyr ggplot2 gridExtra lmerTest MASS Matrix mgcv pbkrtest]; }; @@ -16216,8 +16483,8 @@ in with self; { r2redux = derive2 { name="r2redux"; version="1.0.17"; sha256="07666saxzxy48i2dd0gi0m1x912dn5s78m9rqriwnavnx76ca20i"; depends=[]; }; r2resize = derive2 { name="r2resize"; version="1.9"; sha256="19dsc3ljvgi8f4na71gbkz7fgq63y7vvwknzbwfrgz2ygpd0vyqg"; depends=[DT htmltools nextGenShinyApps quickcode shiny]; }; r2rtf = derive2 { name="r2rtf"; version="1.1.1"; sha256="0lhz6ay2f250hqalz96h4x8pshg8v8zljzz3x9lvrdsygcc8hjyn"; depends=[]; }; - r2shortcode = derive2 { name="r2shortcode"; version="0.1"; sha256="03djy8m146k31xgvwcbrd1nzwj4wdlvvwzgviv80kskgr6ld9jrj"; depends=[magrittr stringr]; }; - r2social = derive2 { name="r2social"; version="1.1"; sha256="1a75ck2h5f6nnjniwj1a1y31dfsda6gw1db2l2j8fd5nf10piwgk"; depends=[htmltools shiny]; }; + r2shortcode = derive2 { name="r2shortcode"; version="0.2"; sha256="1q6zf3pxdmh8p2mlls1iw2043cbn5pixfw1b4sv03gcipymp5jzy"; depends=[stringr]; }; + r2social = derive2 { name="r2social"; version="1.2"; sha256="0lwdjbb99zab94nkbdw6ilkz3rvgv6lkrgcvb1z24midiykwfmfs"; depends=[htmltools quickcode shiny]; }; r2spss = derive2 { name="r2spss"; version="0.3.2"; sha256="1d0znbw0bmgl8k9xwz78lmidh8338n3vq4f9qyqmb87nvjmiilhl"; depends=[car ggplot2 scales]; }; r2stl = derive2 { name="r2stl"; version="1.0.3"; sha256="0xh4kz64013gpvrics7p24nq091953zh8yccifknrl7bn15z6sal"; depends=[]; }; r2sundials = derive2 { name="r2sundials"; version="6.5.0-4"; sha256="03ibv93yh7idjrrrkjdbpsi4pnb3rjd48qdlqa89w0wn99lf5qqd"; depends=[Rcpp RcppArmadillo rmumps]; }; @@ -16229,7 +16496,7 @@ in with self; { r4googleads = derive2 { name="r4googleads"; version="0.1.1"; sha256="1v7nfr6fk9q5dchf3ig4169kv0vx1jrbbsgkdgfhhc2mz3cqck16"; depends=[curl jsonlite]; }; r4lineups = derive2 { name="r4lineups"; version="0.1.1"; sha256="1p0dnrp21zx1l9lqx01jnq54d5ppb8siibv47i4gsp7c7db9ymxc"; depends=[boot dplyr ggplot2 ggrepel here magick magrittr pROC psych purrr]; }; r4ss = derive2 { name="r4ss"; version="1.44.0"; sha256="1khcp386kxz2rwzfvx0a3bf3ws69dh9vqhjsnwh29gy6g238050d"; depends=[coda corpcor dplyr forcats ggplot2 kableExtra lifecycle stringr]; }; - r5r = derive2 { name="r5r"; version="1.1.0"; sha256="07w7riqh7vkq4zqvi5hqcbk1nr8y2lq2kbg9738wpc7fsr4m5amg"; depends=[checkmate concaveman curl data_table httr jsonlite rJava sf sfheaders zip]; }; + r5r = derive2 { name="r5r"; version="2.0"; sha256="1kvn7341v2dfbv580bzc3zhdmnxk400mjrbrs5bar2hwkwvv4w4r"; depends=[checkmate cli concaveman data_table jsonlite rJava rlang sf sfheaders zip]; }; r6extended = derive2 { name="r6extended"; version="0.1.2"; sha256="1kq1j5rx57053mslj8jx1s0wjvhis7x3y264zw44q4k2x48q9wxs"; depends=[digest hellno magrittr R6]; }; r6methods = derive2 { name="r6methods"; version="0.1.0"; sha256="18q1qd7hkxbk0yilqdk17cp7qbl4c71jv10z732539wcmy8svb1v"; depends=[dplyr glue magrittr miniUI purrr rstudioapi shiny stringr]; }; rADA = derive2 { name="rADA"; version="1.1.9"; sha256="0p47nqm8mki03pq5gzc2r5vx4vixs6hpf7am1fvadgi2bn2jrcl2"; depends=[car dplyr e1071 forestplot ggplot2 gridExtra Hmisc knitr lme4 lmerTest matrixStats openxlsx reshape2 stringr tidyr]; }; @@ -16241,7 +16508,7 @@ in with self; { rBDAT = derive2 { name="rBDAT"; version="1.0.0"; sha256="02s91p6nvxbm3wflvs75aln3zw0g6535sxrmzkhywcc9k3x63926"; depends=[]; }; rBMF = derive2 { name="rBMF"; version="1.1"; sha256="16yg1k7vv88q421nk1a70626c7c54bwnb3x7kiyxv2c0ha00f3g8"; depends=[Matrix Rcpp]; }; rBahadur = derive2 { name="rBahadur"; version="1.0.0"; sha256="1gqr70v5xklzncqrn72879yg10hjz059r4wsvq5hq9jf4gfaqsgz"; depends=[]; }; - rBayesianOptimization = derive2 { name="rBayesianOptimization"; version="1.2.0"; sha256="0gwdzv4wl4n940ph23yhjh0s192k9visvivww5k1kmy2b1j88cva"; depends=[data_table foreach GPfit magrittr]; }; + rBayesianOptimization = derive2 { name="rBayesianOptimization"; version="1.2.1"; sha256="071317r3xbcvkckzvgiac786zi2cy7zbrknscj3r521kaki1rfaf"; depends=[data_table foreach GPfit magrittr]; }; rBeta2009 = derive2 { name="rBeta2009"; version="1.0"; sha256="0ljzxlndn9ba36lh7s3k4biim2qkh2mw9c0kj22a507qbzw1vgnq"; depends=[]; }; rBiasCorrection = derive2 { name="rBiasCorrection"; version="0.3.4"; sha256="1ivxxw7jf1s95abjwc794mqklkvlgvgyyb6ii99x6mnga6flh11n"; depends=[data_table future future_apply ggplot2 magrittr nls2 polynom]; }; rCBA = derive2 { name="rCBA"; version="0.4.3"; sha256="10rc08gwsf15f4lci8bbgwpwj8n7k1m23hxk633v68g9amla5nvx"; depends=[arules R_utils rJava TunePareto]; }; @@ -16253,8 +16520,8 @@ in with self; { rDNAse = derive2 { name="rDNAse"; version="1.1-1"; sha256="0cl51q61kwvdsm5f49cjjbzggqam1fnr6gp15cmy6m2yahyxg1lk"; depends=[]; }; rDataPipeline = derive2 { name="rDataPipeline"; version="0.54.1"; sha256="0i0vb7gsjshh1wn0lksdma51xdyn6qw54j02cb0xmzcg896gl2p9"; depends=[assertthat cli configr dplyr git2r httr jsonlite openssl R6 rhdf5 semver usethis yaml]; }; rDecode = derive2 { name="rDecode"; version="0.1.0"; sha256="1d0rrhycw9anhvx6czz7axkzhzqprdgi9sqfglmc962zf1x3hmn2"; depends=[]; }; - rEDM = derive2 { name="rEDM"; version="1.15.3"; sha256="04dmk5q6rm3rhihprpswkcwyimwq8i5q1c9fwj2wl83ldf6lvigf"; depends=[Rcpp RcppThread]; }; - rEMM = derive2 { name="rEMM"; version="1.2.0"; sha256="1qicpxxbm8gc5nb2j2n8sa5i342dw8pjgmbw01963vsybhkwzsim"; depends=[cluster clusterGeneration igraph MASS proxy stream]; }; + rEDM = derive2 { name="rEDM"; version="1.15.4"; sha256="1h2mda6m70r976jzh4znz73bzdiib524iyz6khz2j0wzs0gbl5sk"; depends=[Rcpp RcppThread]; }; + rEMM = derive2 { name="rEMM"; version="1.2.1"; sha256="13pxw0np8pn895wcb3rxvc0s7ayr968567fx4p2z8gnz2hp7g62j"; depends=[cluster clusterGeneration igraph MASS proxy stream]; }; rENA = derive2 { name="rENA"; version="0.2.7"; sha256="136rlzm4pkip0j1zhn4ycsfmq4hjwvhp4d5359wsjkym6lr9n846"; depends=[concatenate data_table doParallel foreach magrittr plotly R6 Rcpp RcppArmadillo scales]; }; rFSA = derive2 { name="rFSA"; version="0.9.6"; sha256="1fxd194iq8jnlsnj76mjq2f6db7ln641qwfsf5v63kx3qqhn8x5s"; depends=[hash rPref tibble tidyr]; }; rFerns = derive2 { name="rFerns"; version="5.0.0"; sha256="1yw3np5iamnr7f3nrd507dkyz76nxmzdpinwxncv87yw30g6gnkq"; depends=[]; }; @@ -16267,6 +16534,7 @@ in with self; { rKIN = derive2 { name="rKIN"; version="1.0.2"; sha256="0dp8m7x5a9glz7yvbv207j3l0226xjxmgf0k2x6rv7zwg9v6y5qk"; depends=[dplyr ggplot2 ks MASS randomcoloR RColorBrewer sf shades]; }; rKOMICS = derive2 { name="rKOMICS"; version="1.3"; sha256="0v04f9kjdwxdggk3cv29hrnbykz3yq523gxh1kh7vls9xpm6c5wr"; depends=[ape circlize ComplexHeatmap dplyr factoextra FactoMineR ggplot2 ggpubr magrittr reshape2 stringr]; }; rKenyaForex = derive2 { name="rKenyaForex"; version="0.1.0"; sha256="1y5hdc1n8kan42vzg6kpfgz68s1bpd93pavcisxh03c76zkf9ap9"; depends=[]; }; + rKolada = derive2 { name="rKolada"; version="0.2.3"; sha256="0q4npg3f50rx9vx9d3zmh2i6m0rnd2f7pvgr624ickja6s28bjc1"; depends=[dplyr glue httr jsonlite magrittr purrr rlang stringr tibble tidyr urltools]; }; rLDCP = derive2 { name="rLDCP"; version="1.0.2"; sha256="0k7zc1xyqmcl7070hhpqw1d2k1ij6bd4wjym8cw263pds2n7nx21"; depends=[XML]; }; rLFT = derive2 { name="rLFT"; version="1.0.1"; sha256="0d86z5ckhkavgr2xi9pk7pw8ss3whrssa7na43kj0pirax9cys4z"; depends=[Rcpp sf]; }; rLTP = derive2 { name="rLTP"; version="0.1.4"; sha256="04w432m03xwh0szshsrfw5h7wy43q4lj8z0y07k8w6gsf27cy5bx"; depends=[RCurl]; }; @@ -16284,24 +16552,26 @@ in with self; { rPACI = derive2 { name="rPACI"; version="0.2.2"; sha256="10i9lx8h67x3ldysjqgfi6dqbclj7pwfg15wxzr2vw3qzsjyb9cz"; depends=[bnlearn ggplot2 ggpubr rlang tidyr]; }; rPAex = derive2 { name="rPAex"; version="1.0.5"; sha256="1gx0hgyizhkv6wkdi4wrfc5vl2j548x418gff0ysq2nmifm5lpcy"; depends=[agricolae terra]; }; rPBK = derive2 { name="rPBK"; version="0.2.4"; sha256="0sbnxhbv7gi1y1in96cw875sgbr54w5i43al2ivwj6kkdds0i91i"; depends=[BH ggplot2 Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; - rPDBapi = derive2 { name="rPDBapi"; version="1.0"; sha256="1mzv5spr7z2khr9vvhy6pmn7mswz1rjqw0hs7jhhxay7lv636xyz"; depends=[bio3d dplyr httr jsonlite magrittr purrr stringr xml2]; }; + rPDBapi = derive2 { name="rPDBapi"; version="1.3"; sha256="16vfwln7k55010h3x9f7znljf0m4x0x97dgnaycxnqf5gpsv65iw"; depends=[bio3d dplyr httr jsonlite magrittr purrr xml2]; }; rPackedBar = derive2 { name="rPackedBar"; version="0.2.2"; sha256="1nh0kvj4bqkinczj8llcgy63ibsnk9vgsvm0vqg8g526x0vffdma"; depends=[data_table plotly scales shiny]; }; rPanglaoDB = derive2 { name="rPanglaoDB"; version="0.2.1"; sha256="1ykzih3idgp2yhbw4039hhhzv0nmrmn3wx2c4dxmgp5qzhrg42nf"; depends=[Matrix pbapply Seurat XML xml2]; }; rPowerSampleSize = derive2 { name="rPowerSampleSize"; version="1.0.2"; sha256="1insdfvcn1pirsnf7nwfia0kzgsmh2zpghgfj2yc35ld1r9j2hp2"; depends=[mvtnorm ssanv]; }; rPraat = derive2 { name="rPraat"; version="1.3.2-1"; sha256="19qd3hylp8m0y171xhdd3k84izxyid7k2f9583gkxq8kik3md1v2"; depends=[dplyr dygraphs readr stringr tuneR]; }; rPref = derive2 { name="rPref"; version="1.4.0"; sha256="1ylb4mc5fjvmi8wly9w4v25l7sc8i9hk28lfidgzaavp5447af2w"; depends=[dplyr igraph lazyeval Rcpp RcppParallel]; }; rQCC = derive2 { name="rQCC"; version="2.22.12"; sha256="0z5gq6pgdp3hxlngcr5lxzj01sf9h9bmdyr1hh6ikr5wjb36wjzx"; depends=[]; }; + rQSAR = derive2 { name="rQSAR"; version="1.0.0"; sha256="1s2s7bvb9pd7vsdcbkk4zmndixfwfmiv4a9bkaix7rdh5fk057kw"; depends=[caret corrplot dplyr ggplot2 gridExtra leaps pls randomForest rcdk tibble]; }; rRAP = derive2 { name="rRAP"; version="1.1"; sha256="1nzvs8bjkbjraa33azxf9mrxsxh87qhh3qlldrcs5y4fq4ancyqb"; depends=[lars lassoshooting MASS]; }; rSAFE = derive2 { name="rSAFE"; version="0.1.4"; sha256="1ghpwpvjid2dfn2c3fml18vf1d5yr092mj6dg7yxsp47vy3m1r6b"; depends=[DALEX dendextend ggplot2 ggpubr ingredients sets]; }; rSCA = derive2 { name="rSCA"; version="3.1"; sha256="0dhd5325x05cbnw34mlipndw5xnncl9kj7kppb2s5bx2gllcdqqd"; depends=[]; }; - rSEA = derive2 { name="rSEA"; version="2.1.1"; sha256="18108ds65ykxygbw1s4i5rb1ngzwymv1x3dhcv1lcwkmqplnaar9"; depends=[ggplot2 hommel]; }; + rSDI = derive2 { name="rSDI"; version="0.2.1"; sha256="1rmbxl010n38lrn0z9prn2hzb6afk889gipbahchmcv7f767sdwa"; depends=[igraph]; }; + rSEA = derive2 { name="rSEA"; version="2.1.2"; sha256="094immjsmgkhl68aflbai1y15d50wkq2qbrmcs8bj7in17iw5qfq"; depends=[ggplot2 hommel]; }; rSFA = derive2 { name="rSFA"; version="1.5"; sha256="17jabv64rgaxs5kx579vjrhcw2k08c6ah6a11cswl8v9h0vjjz8i"; depends=[MASS]; }; rSHAPE = derive2 { name="rSHAPE"; version="0.3.2"; sha256="0z6dizsxlkmaymbd24b1m1i8kmndcf21nxxnyfzq6gvdii7bal4h"; depends=[abind DBI doParallel evd foreach RSQLite sn VGAM]; }; rSPARCS = derive2 { name="rSPARCS"; version="0.1.1"; sha256="1693i1jnk2py46d1cngi8gqv8bq3i0fc7invliyv6lfpshwbi388"; depends=[data_table dplyr geosphere plyr raster sf sp tigris]; }; rSPDE = derive2 { name="rSPDE"; version="2.3.3"; sha256="1l03rd8knh9mws1fbagspvpyli1sdgijslc0axwwbfjqxcpqg6yq"; depends=[broom fmesher lifecycle Matrix]; }; rSRD = derive2 { name="rSRD"; version="0.1.7"; sha256="1srvv49xxkq2nx7fvbn3d2hr4v6ypkxgz6ms1l89zgd0ypdgmypa"; depends=[dplyr ggplot2 ggrepel gplots janitor Rcpp rlang stringr tibble]; }; rSpectral = derive2 { name="rSpectral"; version="1.0.0.10"; sha256="12fgyjlk4a6gm2ccjw4mh47ccln2i7iklqammmk8y20i3hd3mh6x"; depends=[graph igraph Rcpp RcppArmadillo Rdpack]; }; - rStrava = derive2 { name="rStrava"; version="1.3.0"; sha256="0k2nz17s4rlb86gmr0c4r56abw4j7dqshjk599kqy28jqmf2nkyy"; depends=[dplyr geosphere ggplot2 ggspatial googleway httr magrittr plyr prettymapr purrr RCurl rvest tibble tidyr XML xml2]; }; + rStrava = derive2 { name="rStrava"; version="1.3.1"; sha256="1kn2x208iyz235zf64r2wz4jqgas5srzzjf6gpckqh8dkc6s234f"; depends=[dplyr geosphere ggplot2 ggspatial googleway httr magrittr maptiles purrr RCurl rvest tibble tidyr tidyterra XML xml2]; }; rTCRBCRr = derive2 { name="rTCRBCRr"; version="0.1.1"; sha256="0k4blxbnyzgfgcvn59zw8fnw6avhgbmbgkk6a1ycpz1jijy1sn2z"; depends=[magrittr readr tidyr tidyselect]; }; rTG = derive2 { name="rTG"; version="1.0.2"; sha256="1zg8ly42z7dy2b7iaggfc1wgf7hw2fsaj0ixbf5kw0gqmf7gxzss"; depends=[brnn dplyr ggplot2 knitr magrittr mgcv minpack_lm]; }; rTLsDeep = derive2 { name="rTLsDeep"; version="0.0.5"; sha256="1hkhshpcfdrv7df8lawsgmbrfkmbasd1jc4dddz6yzc21fkg136p"; depends=[caret ggplot2 keras lidR matrixStats reticulate rgl sf tensorflow]; }; @@ -16310,16 +16580,15 @@ in with self; { rTRNG = derive2 { name="rTRNG"; version="4.23.1-2"; sha256="0rba3dxy97r75mxfn8rxrk2081my79la2m5m9h5ms2z5px07llqd"; depends=[Rcpp RcppParallel]; }; rTableICC = derive2 { name="rTableICC"; version="1.0.9"; sha256="110jcrry258mw6dskv1p3pz5h9161y2dk3m8xl92ycvjfnxxzcbx"; depends=[aster partitions]; }; rTensor = derive2 { name="rTensor"; version="1.4.8"; sha256="1ks4rwaish24sg5gc2jkfdqfq6h8gh9f3wdxk3dxjgpwjqwijz8f"; depends=[]; }; - rTensor2 = derive2 { name="rTensor2"; version="0.2.0"; sha256="1aspffwgk5937vl6r1ha5is9i3aznmcpmnjgwa5ar5w4pnyilvnj"; depends=[gsignal Matrix matrixcalc rTensor wavethresh]; }; + rTensor2 = derive2 { name="rTensor2"; version="2.0.0"; sha256="0bangmph2hmk50gx21dkky0b22aimh168bndbp7a0s5vg2m49ijz"; depends=[gsignal Matrix matrixcalc png raster rTensor wavethresh]; }; rTephra = derive2 { name="rTephra"; version="0.1"; sha256="045f2sp2j4hiwa9k1vs6cxr59x1yr34jq1z2crasxflsxbwa3xz8"; depends=[]; }; rTorch = derive2 { name="rTorch"; version="0.4.2"; sha256="03a9vls09mgd77xm1q1h1pqw4q026rdibbjr218706h4iqphrqm7"; depends=[jsonlite reticulate rstudioapi]; }; - rUM = derive2 { name="rUM"; version="1.0.2"; sha256="02bwkgr8c7dbijnz0bsz9snw74d5xjykj6irvv983cd5rmb1kpsy"; depends=[bookdown conflicted rlang rmarkdown table1 tidyverse usethis]; }; + rTwig = derive2 { name="rTwig"; version="1.0.2"; sha256="1d3h4ym2vrlp04arjxg4s8zd9d5kyxf6ibvv169calsvkd4rfcn7"; depends=[cobs colourvalues data_table DescTools doFuture foreach future igraph kit Matrix Morpho progressr purrr R_matlab randomcoloR Rdpack rgl rmatio tidytable]; }; + rUM = derive2 { name="rUM"; version="2.0.0"; sha256="1x9waiyxq5jgi6ggd078wfzgq29adawfs7jn4m5qj4wba7sddq2m"; depends=[bookdown conflicted glue gtsummary here quarto rio rlang rmarkdown roxygen2 stringr table1 tidymodels tidyverse usethis]; }; rWCVP = derive2 { name="rWCVP"; version="1.2.4"; sha256="1qs3h66m2nw44iry5jlczwd00s79669vrk8k1crdh7vgvhnf5r4y"; depends=[cli dplyr ggplot2 gt htmltools magrittr phonics purrr RecordLinkage rlang rmarkdown sf stringr tibble tidyr withr]; }; - rWind = derive2 { name="rWind"; version="1.1.7"; sha256="1dvzkhi9hbxd9wvggcbkfx7hxaxjssbmfnqsc7qakj8pkbvr7nax"; depends=[gdistance lubridate Matrix raster]; }; rWishart = derive2 { name="rWishart"; version="0.1.2"; sha256="0wzijc454mrvmggb7a5jqwjbmk0kzr4bmy0iwniz5cn343pr1rri"; depends=[lazyeval MASS Matrix]; }; rYoutheria = derive2 { name="rYoutheria"; version="1.0.3"; sha256="07l7xn0csy95hvviyn6p0h2ybh36cqrm5lz60dphwsq3ahf7sw68"; depends=[plyr RCurl reshape2 RJSONIO]; }; ra4bayesmeta = derive2 { name="ra4bayesmeta"; version="1.0-8"; sha256="1v55ci595x4rhrfswh53m8556sc4lj49b1339yja8ww4rsrx872a"; depends=[bayesmeta]; }; - rabhit = derive2 { name="rabhit"; version="0.2.5"; sha256="0c513sbldd85snww412k3c5rhmzd5k89s2wq4d713qsvzsh4v1xl"; depends=[alakazam cowplot data_table dendextend dplyr fastmatch ggdendro ggplot2 gridExtra gtable gtools htmlwidgets plotly plyr RColorBrewer readr reshape2 rlang splitstackshape stringi tidyr tigger]; }; rabi = derive2 { name="rabi"; version="1.0.2"; sha256="0jndx1gvsnsv1xrx3ismgvjp7d4kj3436zcawvw32c5klvxx0y4j"; depends=[numbers polynom shiny stringdist]; }; racademyocean = derive2 { name="racademyocean"; version="0.3.2"; sha256="0p16xwlm67rvbla6mnky6yv5aa2r61v645jlwhg0zn2dyc8xpajk"; depends=[cli dplyr httr2 pbapply purrr rappdirs retry rlang stringr tidyr withr]; }; raceland = derive2 { name="raceland"; version="1.2.1"; sha256="0kkl12amzaff6y4bj1c62p1clkvxlfm8d20i6d09x35hkkxblnjk"; depends=[comat plotwidgets Rcpp RcppArmadillo sf terra]; }; @@ -16328,18 +16597,18 @@ in with self; { radar = derive2 { name="radar"; version="1.0.0"; sha256="1wh5j3cfbj01jx2kbm9ca5cqhbb0vw7ifjn426bllm4lbbd8l273"; depends=[]; }; radarBoxplot = derive2 { name="radarBoxplot"; version="1.0.5"; sha256="1lmgh8j3c6jiiwpdz9l5zd07xcv87laxnj789bpqnmxa0szsfngl"; depends=[]; }; radarchart = derive2 { name="radarchart"; version="0.3.1"; sha256="0gcxnbgj8ja1m4wzhbjy67m6zphf0c5ni9yx7sr7f0abm03ry753"; depends=[htmltools htmlwidgets]; }; - radiant = derive2 { name="radiant"; version="1.6.1"; sha256="19h0l41n5qjqy0g3ga09a44anj1c429n4fakpxh3glhwv5xy4314"; depends=[r_import radiant_basics radiant_data radiant_design radiant_model radiant_multivariate shiny]; }; - radiant_basics = derive2 { name="radiant.basics"; version="1.6.0"; sha256="1dr53n39a7g4dar6zxmdkrzqqksc124s8whj6idy97jg9vj3qjsf"; depends=[dplyr ggplot2 lubridate magrittr patchwork polycor psych r_import radiant_data rlang scales shiny tidyr]; }; - radiant_data = derive2 { name="radiant.data"; version="1.6.3"; sha256="1nwiw5dps0030f893gs0fixis6xigfr8y8rqhi3l505yx2bsrjbj"; depends=[arrow base64enc broom bslib car curl dplyr DT ggplot2 glue jsonlite knitr lubridate magrittr markdown MASS patchwork plotly png psych r_import randomizr readr readxl rlang rmarkdown rstudioapi scales shiny shinyAce shinyFiles stringi tibble tidyr writexl]; }; - radiant_design = derive2 { name="radiant.design"; version="1.6.1"; sha256="0rv9cpw80rhc47fza44z6a9jkij07ajpivr2ky0y2hixzf5c8h5a"; depends=[AlgDesign dplyr magrittr mvtnorm polycor pwr r_import radiant_data randomizr shiny]; }; - radiant_model = derive2 { name="radiant.model"; version="1.6.3"; sha256="182w8wj3zh2ynhxscy9d4wrfc3n3yj89569w7102l1rxyrssi755"; depends=[broom car data_tree DiagrammeR dplyr e1071 ggplot2 ggrepel lubridate magrittr NeuralNetTools nnet patchwork pdp psych r_import radiant_basics radiant_data ranger rlang rpart sandwich scales shiny stringi stringr tidyr tidyselect vip xgboost yaml]; }; - radiant_multivariate = derive2 { name="radiant.multivariate"; version="1.6.1"; sha256="0xqn7j8r2v5j8ajkj8ghdrnkhfi10m2351kr926b3qg4898ywfwn"; depends=[car clustMixType dplyr ggplot2 ggrepel gower GPArotation lubridate magrittr MASS patchwork polycor psych r_import radiant_data radiant_model rlang scales shiny]; }; + radiant = derive2 { name="radiant"; version="1.6.6"; sha256="1v4vb5dpqljpk3xya26psg988v17nfcybjzw3dnp6bi77x24cq5k"; depends=[r_import radiant_basics radiant_data radiant_design radiant_model radiant_multivariate shiny]; }; + radiant_basics = derive2 { name="radiant.basics"; version="1.6.6"; sha256="12sm0zypd5n9f5pk7bpdqh7h0p54cmvxp3slzdmi5sa0mbklfc9q"; depends=[dplyr ggplot2 lubridate magrittr patchwork polycor psych r_import radiant_data rlang scales shiny tidyr]; }; + radiant_data = derive2 { name="radiant.data"; version="1.6.6"; sha256="09cbd21bvj4a3n5r1ch638y5dgi7xmmg1y62i6ixcjhbr8wypjmn"; depends=[arrow base64enc broom bslib car curl dplyr DT ggplot2 glue jsonlite knitr lubridate magrittr markdown MASS patchwork plotly png psych r_import randomizr readr readxl rlang rmarkdown rstudioapi scales shiny shinyAce shinyFiles stringi tibble tidyr writexl]; }; + radiant_design = derive2 { name="radiant.design"; version="1.6.6"; sha256="0dcc8f6w07hpsjhgan7x0l9zsql82f3d8b9kannsnm2m54cnp5ja"; depends=[AlgDesign dplyr magrittr mvtnorm polycor pwr r_import radiant_data randomizr shiny]; }; + radiant_model = derive2 { name="radiant.model"; version="1.6.6"; sha256="0y1qvngicw279m9065pr6kj2yp80iz88bf4jqj1dawjvcbrl27wv"; depends=[broom car data_tree DiagrammeR dplyr e1071 ggplot2 ggrepel lubridate magrittr NeuralNetTools nnet patchwork pdp psych r_import radiant_basics radiant_data ranger rlang rpart sandwich scales shiny stringi stringr tidyr tidyselect vip xgboost yaml]; }; + radiant_multivariate = derive2 { name="radiant.multivariate"; version="1.6.6"; sha256="02nviya2i45xpgnjsldpm5hvy30nh5z1nb6yk5wrps3hl044lqgi"; depends=[car clustMixType dplyr ggplot2 ggrepel gower GPArotation lubridate magrittr MASS patchwork polycor psych r_import radiant_data radiant_model rlang scales shiny]; }; radir = derive2 { name="radir"; version="1.0.4"; sha256="12a99ig3n6kp5wa5rjp2w1nal4qqjs6vq05d3lrqcyl3bind6lqb"; depends=[hermite]; }; radlibs = derive2 { name="radlibs"; version="0.2.0"; sha256="1xl7pacqgiv68ay7mkr6bkx3rqqr7z8b9yh42n4zm7ybqfxbx6dr"; depends=[data_table lexicon stringr]; }; radous = derive2 { name="radous"; version="0.1.3"; sha256="1pip3givlkzb8i65nz6w724818jjr8j8nizpc3g35r9bvpmn7c2y"; depends=[checkmate curl glue httr readr]; }; radsafer = derive2 { name="radsafer"; version="2.3.0"; sha256="0zw0dn8pi1yn786fcmm414dap77wdni43dma2pyjbxb15zagpmli"; depends=[dplyr ggplot2 ggthemes lifecycle magrittr RadData readr rlang scatterplot3d stringr]; }; rafalib = derive2 { name="rafalib"; version="1.0.0"; sha256="1dmxjl66bfdgrybhwyaa8d4i460liqcdw8b29a6w7shgksh29m0k"; depends=[RColorBrewer]; }; - ragg = derive2 { name="ragg"; version="1.3.0"; sha256="1chlas4i6p8gigx02x1y7nanmz9jbv1h4fa145zk223bbg9j931j"; depends=[systemfonts textshaping]; }; + ragg = derive2 { name="ragg"; version="1.3.2"; sha256="0cb9dcp47pl0nizwy0a2ml8hm11bhf7ay20j237hmmgx159a8dw0"; depends=[systemfonts textshaping]; }; rags2ridges = derive2 { name="rags2ridges"; version="2.2.7"; sha256="09dp04y8wl7cws5y94k9j2rlrmm2ci1lk8y77cb17lxr0i1yv6gb"; depends=[expm fdrtool ggplot2 graph gRbase Hmisc igraph RBGL Rcpp RcppArmadillo reshape RSpectra sfsmisc snowfall]; }; ragtop = derive2 { name="ragtop"; version="1.1.1"; sha256="0vgc2q71g8ysccq19kbk9a4swxgd5qj91xm4bshfgdg5chxqnb50"; depends=[futile_logger limSolve]; }; rai = derive2 { name="rai"; version="1.0.0"; sha256="0qimfzchbrarkwmv3mxxbdgvqzk16sc8m1h140zm0cnfgr2pvi5p"; depends=[dplyr ggplot2 readr rlang]; }; @@ -16363,6 +16632,7 @@ in with self; { randnet = derive2 { name="randnet"; version="0.7"; sha256="1zb2arx63avjlqjpbf37cvix080khkihh6bb0g1h2alv4lbaaaak"; depends=[AUC data_table entropy irlba Matrix mgcv nnls poweRlaw pracma RSpectra sparseFLMM]; }; rando = derive2 { name="rando"; version="0.2.0"; sha256="085g48yzwapxxfmm5bvkz0v7pmjwmakb7nl128550ppgc16wxkgb"; depends=[dplyr glue rlang tibble]; }; random = derive2 { name="random"; version="0.2.6"; sha256="0sdhagwjlhldb8hn6h4nd1sflzhwkapzybdlb8hzisy3w2ygjn9b"; depends=[curl]; }; + random_cdisc_data = derive2 { name="random.cdisc.data"; version="0.3.15"; sha256="05hq7hvypc4nm72f879pjyf2iyvj9hgrr1gwjyvwj8by7pkyyw2y"; depends=[checkmate dplyr lifecycle lubridate magrittr rlang stringr tibble tidyr yaml]; }; random_polychor_pa = derive2 { name="random.polychor.pa"; version="1.1.4-5"; sha256="1a8mnggdmyklxzqid81a88sx6v5jvhfnx5khvy21idsd8pp7pav2"; depends=[boot MASS mvtnorm nFactors psych sfsmisc]; }; randomForest = derive2 { name="randomForest"; version="4.7-1.1"; sha256="1micz9794j7xmj755ln2692rzip8azndflxgdg6xn3j86issi7pm"; depends=[]; }; randomForestExplainer = derive2 { name="randomForestExplainer"; version="0.10.1"; sha256="1ny8c3vn2zvdx12avwvlm4lp648jigkrkcvnhf5qmj8rh0w069v0"; depends=[data_table dplyr DT GGally ggplot2 ggrepel randomForest ranger reshape2 rmarkdown]; }; @@ -16371,7 +16641,7 @@ in with self; { randomGLM = derive2 { name="randomGLM"; version="1.10-1"; sha256="0557dpca39nj1451l28x4xxfr92cf48gy7crlfhnv4k91kglwcnz"; depends=[doParallel foreach geometry Hmisc MASS matrixStats survival]; }; randomLCA = derive2 { name="randomLCA"; version="1.1-3"; sha256="1hjkglqdr9czjr91iwshcdb0acrlk461x896rca4bzc9jv8in9cy"; depends=[boot doParallel doRNG fastGHQuad foreach lattice Matrix Rfast]; }; randomMachines = derive2 { name="randomMachines"; version="0.1.0"; sha256="1b34jwvs2x67kbjmxa5rpxlrqsvghgnyddz250nwpchj2s4lgc17"; depends=[kernlab]; }; - randomNames = derive2 { name="randomNames"; version="1.5-0.0"; sha256="1lv1vqb4wgs0j1gqy84dpa30qsvbp6928zpshczpw87yf32k71vh"; depends=[crayon data_table toOrdinal]; }; + randomNames = derive2 { name="randomNames"; version="1.6-0.0"; sha256="13zqkg0hpi6bpisnn4wwwypv8kbvcnksl5n7p9kj7mdlw8vk38j1"; depends=[crayon data_table toOrdinal]; }; randomUniformForest = derive2 { name="randomUniformForest"; version="1.1.6"; sha256="1qr7c0pkqn2a9knpbc2ch6chwwrvfw1sr5949mkgml36xyv1syv7"; depends=[cluster doParallel foreach ggplot2 iterators MASS pROC Rcpp]; }; randomcoloR = derive2 { name="randomcoloR"; version="1.1.0.1"; sha256="0rqh1zrdza12qq7475f77yvryhh4hj0pg25lb8ywrcljgaj53bnb"; depends=[cluster colorspace Rtsne scales stringr V8]; }; randomizationInference = derive2 { name="randomizationInference"; version="1.0.4"; sha256="0viji0qblnc423abhccn02gl30jbwa866vl7az9fdp95psaij1kp"; depends=[matrixStats permute]; }; @@ -16379,7 +16649,7 @@ in with self; { randomizeR = derive2 { name="randomizeR"; version="3.0.2"; sha256="00w4h8xamf6wix67g921j0xqma5y6zmzd23vr8k2qa48an9bnkfm"; depends=[coin dplyr ggplot2 gsDesign insight magrittr mstate mvtnorm plotrix purrr PwrGSD reshape2 rlang survival]; }; randomizr = derive2 { name="randomizr"; version="1.0.0"; sha256="0r7yawh4dnxawinnlz09f57kgdwa08rpwxq3y35jam3x2q48qijn"; depends=[]; }; randquotes = derive2 { name="randquotes"; version="0.1.1"; sha256="0fj9vx0c4059511wka7ip30yz87y144pz7ny840gp72qm73pp8li"; depends=[curl httr jsonlite xml2]; }; - randtests = derive2 { name="randtests"; version="1.0.1"; sha256="1r1b76g9qlss75qqyh05wic4k08xixgx6lgs7gc49an71h0mi5a7"; depends=[]; }; + randtests = derive2 { name="randtests"; version="1.0.2"; sha256="1yrs0p7bmcjmwmm8iyadrb6p0w8ypwxzhmw6wkx3h2pi7730d6da"; depends=[]; }; randtoolbox = derive2 { name="randtoolbox"; version="2.0.4"; sha256="0jwylffr8zajgd1x24nrv4xxlkic10i8cfd9sy0pkz2g7sai9nll"; depends=[rngWELL]; }; rang = derive2 { name="rang"; version="0.3.0"; sha256="1g5crf9k8pkyvbxxz2wb7pwa91fpk579jaq3d46kafr98xxvrnyb"; depends=[fastmap here httr jsonlite memoise parsedate pkgsearch remotes renv vctrs]; }; rangeBuilder = derive2 { name="rangeBuilder"; version="2.1"; sha256="1r82rmmfwbfl2lxcsnl9xwyr2932jv43cjlvlihi5172irpfgvpw"; depends=[alphahull pbapply Rcpp rnaturalearth sf stringi terra units]; }; @@ -16393,10 +16663,10 @@ in with self; { rankdist = derive2 { name="rankdist"; version="1.1.4"; sha256="1xqrkss8d5vv3blqpvrvdczsygphbx259hy9j7w9b2ahssw8cjr5"; depends=[hash optimx permute Rcpp]; }; rankhazard = derive2 { name="rankhazard"; version="1.1.0"; sha256="0kljn9b74alrd22b5pwfnamdbaqi2wa2z6yzpmgpfs3x0hv72fw7"; depends=[survival]; }; rankinPlot = derive2 { name="rankinPlot"; version="1.1.0"; sha256="1kf8xwzx2mjgv3ad1yj70gm0mrsyghwkmjk98pwcj3a82qk94skr"; depends=[ggplot2 scales]; }; - rankinma = derive2 { name="rankinma"; version="0.2.1"; sha256="13zqi6lqgvfdr1p0p45n1icckwh4zcqrllh6k1dddfb8dy7hvpgd"; depends=[mvtnorm netmeta]; }; + rankinma = derive2 { name="rankinma"; version="0.2.2"; sha256="12l627drysk2hkc62q8i8x25plqyl1iz9phw4x3hy34h3hdkq6wa"; depends=[mvtnorm netmeta]; }; rankrate = derive2 { name="rankrate"; version="1.2.0"; sha256="14262gwyr9n9vwj0njb9piw0algmfr2y6sswarsafvmficagbfhm"; depends=[gtools isotone]; }; - ranktreeEnsemble = derive2 { name="ranktreeEnsemble"; version="0.22"; sha256="1hn66622p3jbm1s0pf438lmws27pwab1qv1zwnsph8zg9qprb2nm"; depends=[data_tree gbm randomForestSRC Rcpp]; }; - rapiclient = derive2 { name="rapiclient"; version="0.1.3"; sha256="1pm4kdga2nz1cpmchdb0ad8gr3bqfm84b1kl32cyc0x3x5rr2syz"; depends=[httr jsonlite yaml]; }; + ranktreeEnsemble = derive2 { name="ranktreeEnsemble"; version="0.23"; sha256="09nax4h3jajbkbjkxwd8zd075lkhgcfhh42c2zqwwn8bkdyk03gr"; depends=[data_tree gbm randomForestSRC Rcpp]; }; + rapiclient = derive2 { name="rapiclient"; version="0.1.5"; sha256="1xp6mmk2rrlk0wmvv23k1dgr7pydw46iinvd138167frmr0rdica"; depends=[httr jsonlite yaml]; }; rapidjsonr = derive2 { name="rapidjsonr"; version="1.2.0"; sha256="07zdirhbzmvq3cp4xn8ngk1lgxbbabzays315zxbs3sxrz6lzjb2"; depends=[]; }; rapidoc = derive2 { name="rapidoc"; version="9.3.4"; sha256="1nzwf4wx8syl9xpvmqn3mz72nhj80ssnm6wbfwnasg003ccfi43c"; depends=[]; }; rapidphylo = derive2 { name="rapidphylo"; version="0.1.2"; sha256="1q0p43ikfpmza8prjcgf12471d0z0bmid33zyhkngykagrg5j2aa"; depends=[ape phangorn]; }; @@ -16427,22 +16697,25 @@ in with self; { rasterdiv = derive2 { name="rasterdiv"; version="0.3.4"; sha256="1pq9xsm6yyb97b8nvqlmb4s3kmd72a9mqxqqd31225qjnm6gv9pz"; depends=[doParallel foreach ggforce ggplot2 progress proxy terra viridis]; }; rasterize = derive2 { name="rasterize"; version="0.1"; sha256="18nrhmq1qmi05rkyr86xsyc8nz0fbdpf2d45h62bbfzbfynqd4qy"; depends=[png]; }; rasterpdf = derive2 { name="rasterpdf"; version="0.1.1"; sha256="0zi54nifbb4dzb29i8rskynblw3z42vzaykwbq30ia5zs9q1bvm5"; depends=[png]; }; - rasterpic = derive2 { name="rasterpic"; version="0.2.4"; sha256="1il05pg1paa7y2y9jcsca8g4sh3l6hmdqw16bkww0a0l5yzzdg60"; depends=[png sf terra]; }; + rasterpic = derive2 { name="rasterpic"; version="0.2.5"; sha256="03p24iw384dxws25mwfzclhpfj9hm3wrv8xmhgrcsffw61q3ad0x"; depends=[png sf terra]; }; ratdat = derive2 { name="ratdat"; version="1.1.0"; sha256="14p8dnc6a3yj98xqa8i90jb8nbwhr4g9drl3djdyswjwiiz30jlg"; depends=[]; }; ratelimitr = derive2 { name="ratelimitr"; version="0.4.1"; sha256="06x759jxr5zcnvg9q120n5bpipkb16piw15kxrpk7i918mby889b"; depends=[assertthat]; }; ratematrix = derive2 { name="ratematrix"; version="1.2.4"; sha256="0azn52d88m1xxckv4g02vraa9gdr5jmsxqwxwaim90p2s8jy33np"; depends=[ape coda corpcor ellipse geiger MASS mvMORPH phylolm Rcpp RcppArmadillo readr]; }; rater = derive2 { name="rater"; version="1.3.1"; sha256="0ipgjhxn8d9g6yv369hckvq84v8rrw5b230zz24h72dy9s2nyr44"; depends=[BH ggplot2 loo Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders]; }; rateratio_test = derive2 { name="rateratio.test"; version="1.1"; sha256="1vajhgawlwf99rb1w1im1njngbb5n37y7lah1l5vv9j5i3pha1y7"; depends=[]; }; - raters = derive2 { name="raters"; version="2.0.3"; sha256="0nqk45jv9r3m47kid1irxf1nf9p95pvdp1i87xss1jhyqfx2zxzl"; depends=[]; }; + raters = derive2 { name="raters"; version="2.0.4"; sha256="1ypg3inqbn4rkwcmqbcwkiydp7sb2bpfrcfdgd1pfp0k73zbin2s"; depends=[]; }; ratesci = derive2 { name="ratesci"; version="0.4-0"; sha256="1imraj95vcwz3i6r767zwckjqs1vp7bfww9d792l5nvwi5zyddp4"; depends=[]; }; + ratioOfQsprays = derive2 { name="ratioOfQsprays"; version="1.0.0"; sha256="1xzss28wpyx9c5n504sllnlsjqv6ybiswbn3ws9is03024fzcaa9"; depends=[BH gmp qspray Rcpp RcppArmadillo RcppCGAL Ryacas]; }; rationalfun = derive2 { name="rationalfun"; version="0.1-1"; sha256="0xabnqgzl8qdc4x9547mmkr1rm78p3fysdvk6jhjdi8cp2p6kcjh"; depends=[polynom]; }; ratios = derive2 { name="ratios"; version="1.2.0"; sha256="16q9v2lhgklvdp3hi9x3afdldznfpwg775p80m2g5074q2dzjpgg"; depends=[data_table stringr]; }; rattle = derive2 { name="rattle"; version="5.5.1"; sha256="1nhknpdy2a3szcbylg9cq1c1g9ds5y3m35dbbi6rh8r85777qviy"; depends=[bitops dplyr ggplot2 magrittr rpart_plot stringi stringr tibble tidyr XML]; }; ravelRy = derive2 { name="ravelRy"; version="0.1.0"; sha256="07mywv57rw2b309i2qisbpx1x3sb3z6n2b5gia9bdmb2m4hhpdai"; depends=[dplyr httr jsonlite purrr tibble tidyr]; }; raven_rdf = derive2 { name="raven.rdf"; version="0.2.0"; sha256="12jy3md6d1qwzkks5iljn4h0iv5lj3n39ll7r3fvrxjwh7afvw7r"; depends=[]; }; + ravetools = derive2 { name="ravetools"; version="0.1.6"; sha256="1akid3qsjppracvqz6cxwaz1w9v251m0xb534gd2dsfibk1s2jli"; depends=[digest filearray pracma R6 Rcpp RcppEigen RNiftyReg signal waveslim]; }; raw = derive2 { name="raw"; version="0.1.8"; sha256="1y2vhpgigzkd2xyj3986wlzm1g3pp99w6fspmhlff5czd73g16is"; depends=[]; }; rawKS = derive2 { name="rawKS"; version="0.1.0"; sha256="1yiw9imhgij49qbm9hk6psb73zngqmxxwnaxq144ydwb7fbk6j0z"; depends=[dplyr ggplot2 magrittr ROCR tidyr]; }; raws_profile = derive2 { name="raws.profile"; version="0.1.0"; sha256="04f7wk7x9j3rb6nn3zqss9vw0h9a4vpcjyilc2vqy0fm2by41xkg"; depends=[stringr tibble withr]; }; + raybevel = derive2 { name="raybevel"; version="0.1.3"; sha256="0431mk0lslqwffknarb7zm2nbgv564d3karf9davc7w1xgnf11fj"; depends=[BH decido digest progress rayvertex Rcpp RcppCGAL RcppThread sf]; }; rayimage = derive2 { name="rayimage"; version="0.10.0"; sha256="1ss1l8cbm0p7d413s81ncqhd7dqhyd22v5z1z48s9a56pxm2lw5l"; depends=[jpeg png progress Rcpp RcppArmadillo]; }; raymolecule = derive2 { name="raymolecule"; version="0.5.3"; sha256="0lwjx43wd4ziriqd3rxar14z5497x79nfh3h05kn9b7rsiiv8ir9"; depends=[httr magrittr PeriodicTable rayrender rayvertex]; }; rayrender = derive2 { name="rayrender"; version="0.32.2"; sha256="1vmxnwr8bf4w8kfizqvbi94p2bh7cnwsl8xcljvf4cslsx2ky8l3"; depends=[cli decido magrittr pillar png progress raster rayimage rayvertex Rcpp RcppThread spacefillr vctrs withr]; }; @@ -16453,7 +16726,7 @@ in with self; { rbacon = derive2 { name="rbacon"; version="3.2.0"; sha256="18d0mcfmslycbsi9sgqkxw1xwm9cgq4rxkwrvlbm67g0ryad86l3"; depends=[coda data_table Rcpp rintcal]; }; rbbnp = derive2 { name="rbbnp"; version="0.1.0"; sha256="0lpzccb645lbzplwq8rvxd9jx90k3wy70ijwx8c7gdpn9kxb13jr"; depends=[dplyr ggplot2 gridExtra pracma purrr tidyr]; }; rbcb = derive2 { name="rbcb"; version="0.1.14"; sha256="1i6gxcz90r536sp9khafzb5lfbqymh61nvaancvl8jl8wqindxp4"; depends=[digest httr jsonlite purrr tibble xml2 xts]; }; - rbcc = derive2 { name="rbcc"; version="0.1.0"; sha256="0mfwkbgcnahrk19n14icf26rxf93nqm1r0kr2gi02gmpqrycl0br"; depends=[ggplot2 PearsonDS pracma qcc reshape2]; }; + rbcc = derive2 { name="rbcc"; version="0.1.1"; sha256="1v99cpbq7wd9kfjfanyxfmxifvnr73882hh0zyrp6n3nvj7l85rz"; depends=[ggplot2 PearsonDS pracma qcc reshape2]; }; rbch = derive2 { name="rbch"; version="0.1-1"; sha256="0n2s5qfgjvg7vv65myz6dcmmaf37z883z1sw4hryngz2z6w4zz5q"; depends=[gmp httr openssl rjson]; }; rbedrock = derive2 { name="rbedrock"; version="0.3.2"; sha256="0jyc7cikr86927ax3qhniv8injqwndzhr4bhd4yphh2sliv6ci8c"; depends=[bit64 digest dplyr fs magrittr purrr R6 rappdirs readr rlang stringr tibble tidyr vctrs]; }; rbenchmark = derive2 { name="rbenchmark"; version="1.0.0"; sha256="010fn3qwnk2k411cbqyvra1d12c3bhhl3spzm8kxffmirj4p2al9"; depends=[]; }; @@ -16463,7 +16736,7 @@ in with self; { rbibutils = derive2 { name="rbibutils"; version="2.2.16"; sha256="1brab8vzzf44d9rpp9k3r2ajvrs09cbwf4ak014iffzn8yx0yz4w"; depends=[]; }; rbin = derive2 { name="rbin"; version="0.2.0"; sha256="18g6s4m0yc1bzrymk8km553kcwi4vj16b6mxw2lmv48z7243iq87"; depends=[data_table ggplot2]; }; rbioacc = derive2 { name="rbioacc"; version="1.2.1"; sha256="0yz3mlkz6869rlg56m49bl5bq16gnmr69lznlvcsz7vmwli2ic4x"; depends=[BH GGally ggmcmc ggplot2 loo Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders stringr zoo]; }; - rbioapi = derive2 { name="rbioapi"; version="0.8.0"; sha256="0dxd58y0a5pd5zw3agd405xb6325z629n7lg9ps7hqc66jy59pba"; depends=[httr jsonlite]; }; + rbioapi = derive2 { name="rbioapi"; version="0.8.1"; sha256="1ijmdqmmshqb3f6gv8rp6liz31cj00nmady28jdxadpxpp1bp34k"; depends=[httr jsonlite]; }; rbiom = derive2 { name="rbiom"; version="1.0.3"; sha256="13nma1s3p4bzh8mvikrnmkqyyrx9axvxavq6fyk2w0j804w1qzcg"; depends=[magrittr openxlsx plyr R_utils Rcpp RcppParallel rjson rlang slam]; }; rbiouml = derive2 { name="rbiouml"; version="1.11"; sha256="1g1q6xc8x8y71ji75c5fl35sxxss964xmhcqlriybb5zc38m1dh0"; depends=[RCurl RJSONIO]; }; rbit = derive2 { name="rbit"; version="1.0.0"; sha256="09ywr711gv0vgfims2vfcxk3rnd0iadzlksil0q9159yarapfc59"; depends=[R6]; }; @@ -16492,8 +16765,8 @@ in with self; { rcdklibs = derive2 { name="rcdklibs"; version="2.9"; sha256="1hdln6530xs8jinshn78gcmpi6dbidn9hfy0rspmnp7k242av4gg"; depends=[rJava]; }; rcens = derive2 { name="rcens"; version="0.1.1"; sha256="13g99c3w6b1j8g3s6llsk9qx4pfldjf6di9l25a4qlljk1n4r1ar"; depends=[]; }; rchallenge = derive2 { name="rchallenge"; version="1.3.4"; sha256="0i402p6ccjn10ix5nln30pab5nd78hg5q4ivvgc4i99nx7aq0xpx"; depends=[knitr rmarkdown]; }; - rchemo = derive2 { name="rchemo"; version="0.1-1"; sha256="18jcx4f4vs6qjhv2ypy4wgqdcprjpbi738lyr28f0ih7185fipm0"; depends=[data_table e1071 FNN signal]; }; - rcheology = derive2 { name="rcheology"; version="4.3.3.0"; sha256="0q1n6ivzab7kjlakbx1v9fqf7w1i0gg646pd043mvvaacqispai7"; depends=[]; }; + rchemo = derive2 { name="rchemo"; version="0.1-2"; sha256="06wrpv3bnzq9sz6wq4f1sgcq549rafnqh6rzldl160hv7yb7rl80"; depends=[data_table e1071 FNN signal]; }; + rcheology = derive2 { name="rcheology"; version="4.4.0.0"; sha256="1iazraakb1jvcjs2ygay1r7f04fpnmsgcgv028bdxj8ck6pqksrq"; depends=[]; }; rciplot = derive2 { name="rciplot"; version="0.1.1"; sha256="0pz5lvrm9ifhypq490cnqawr87wlh4m0812612s079b9ljsw6dr0"; depends=[dplyr ggplot2 tibble]; }; rcites = derive2 { name="rcites"; version="1.3.0"; sha256="192cdkd4pybpsdab8dzchx96385bdjsm30p8qrlw9wzmij03rx2x"; depends=[cli curl httr jsonlite]; }; rclipboard = derive2 { name="rclipboard"; version="0.2.1"; sha256="18dj35vi5xdg0yhdm58vdgklwyl2zsjkvz01jcvwy7nvhkqm6c82"; depends=[bslib shiny]; }; @@ -16501,7 +16774,7 @@ in with self; { rco = derive2 { name="rco"; version="1.0.2"; sha256="1ch7ak802ri4jr10jqvhvdi6q9fhyhql15ja395xfv6j81d5cmia"; depends=[]; }; rcoder = derive2 { name="rcoder"; version="0.3.0"; sha256="09l1gvcf453j058rls4y2r342y3p4ywvf1g0qzq4kwavxxcl5rn2"; depends=[dplyr glue rlang]; }; rcolors = derive2 { name="rcolors"; version="0.1.0"; sha256="19lkwd1wdwq9if957qjgrz9mq6s8x49dig8snivhw9ksffcfy4xp"; depends=[magrittr]; }; - rcompanion = derive2 { name="rcompanion"; version="2.4.35"; sha256="184fsaandg34ijg1826r10bbm9wq2a02j68zb37hsm8zrggzm8jc"; depends=[boot coin DescTools lmtest multcompView nortest plyr]; }; + rcompanion = derive2 { name="rcompanion"; version="2.4.36"; sha256="0r6kppwfm44h9y5wda3pfnxgsjvrdj3ysdmxclhrciq5rlzs2n8v"; depends=[boot coin DescTools lmtest multcompView nortest plyr]; }; rcompendium = derive2 { name="rcompendium"; version="1.3"; sha256="10df6lr776qr2lhc4phpkl53par60f35c694knzfx4s81mprd842"; depends=[cffr clisymbols crayon devtools gert gh gtools renv rmarkdown rstudioapi stringr usethis xfun]; }; rconfig = derive2 { name="rconfig"; version="0.3.0"; sha256="1qxm9l0yd4xir6wr31r1v87g7flbpgggy7lh9lbvg307k8li1j2h"; depends=[jsonlite yaml]; }; rcontroll = derive2 { name="rcontroll"; version="0.1.1"; sha256="14xh5hhb96qk0f3kvvvjbkyswcq17g6y70v5prazldq7i4bzpv8q"; depends=[doParallel doSNOW dplyr foreach gganimate ggplot2 iterators lidR lubridate magrittr Rcpp RcppGSL readr reshape2 sys terra tibble tidyr viridis vroom]; }; @@ -16524,7 +16797,7 @@ in with self; { rddi = derive2 { name="rddi"; version="0.1.1"; sha256="19izmky8rwz98i6w76mac9b1sppjdpa48jm33gy38zd3k6k2054j"; depends=[glue rlang xml2]; }; rddtools = derive2 { name="rddtools"; version="1.6.0"; sha256="12lxdpazfhwn5kkzs91qhs0xcky30dj01yp0v5708ahr1ywqdxmd"; depends=[AER Formula ggplot2 KernSmooth lmtest locpol np rdd rdrobust rmarkdown sandwich]; }; rde = derive2 { name="rde"; version="0.1.0"; sha256="1zw9gdh90hl0wc5c0xwl5x7566r611wk73sbqdmpzpswjyyl9aqm"; depends=[clipr]; }; - rdecision = derive2 { name="rdecision"; version="1.2.0"; sha256="0505xzmz8qsnchm51w2s39d9hs90cyzd8dzv0zgfh183n69lvmfz"; depends=[R6 rlang withr]; }; + rdecision = derive2 { name="rdecision"; version="1.2.1"; sha256="1jd5hgcj9idqs81l8gb8hq57zxjpbziqyj1dj67kzls6mr1kjzil"; depends=[R6 rlang withr]; }; rdeps = derive2 { name="rdeps"; version="0.2"; sha256="0zcik1lf3b37h089sx8pvcdkdilkx832gjwsvzach5mdg1sv3plc"; depends=[cli]; }; rdflib = derive2 { name="rdflib"; version="0.2.8"; sha256="0massic915hyw2752jkaa3rx9nf2v7a87gp3c5qpyn4fnqjai4dn"; depends=[dplyr readr redland stringi tidyr]; }; rdfp = derive2 { name="rdfp"; version="0.1.4"; sha256="1490227hhfjjscfmd8p897v1ijs61pk5sc0a2vr9yjnfmsnxpqrl"; depends=[curl data_table dplyr httr lubridate plyr purrr readr XML xml2]; }; @@ -16536,13 +16809,12 @@ in with self; { rdlocrand = derive2 { name="rdlocrand"; version="1.0"; sha256="0kh66bvfg7jq2rj6zx541xrr887f8jfyinhl6jf21vizcijyf3k6"; depends=[AER sandwich]; }; rdmulti = derive2 { name="rdmulti"; version="1.1"; sha256="1bx97r6d4rfq2y7h85j9g1hqmyf7qmmr7faw4gjxnlh1q281fvdv"; depends=[ggplot2 rdrobust]; }; rdnb = derive2 { name="rdnb"; version="0.1-5"; sha256="00fpycbsczla7vcik649kdw9q0ckqml5f1f1bhphk2mazk12pqva"; depends=[brew httr stringr xml2]; }; - rdoc = derive2 { name="rdoc"; version="0.1.0"; sha256="0ac6413jyrr7m25z30n3bpiafsvjx38ik6rrjzsiqxrfp41j6l9x"; depends=[cli crayon prettycode R6]; }; rdomains = derive2 { name="rdomains"; version="0.2.1"; sha256="1gpgryfdv4dhv98nfnr15lqq9ndwi8q17rwm5z7j2klgi5d644ld"; depends=[aws_alexa curl devtools glmnet httr jsonlite Matrix R_utils urltools virustotal XML xml2]; }; rdoxygen = derive2 { name="rdoxygen"; version="1.0.0"; sha256="16907969w66xvy62k45rw10qfv4x8z6jkkc6i97vppkgnlvf4d4b"; depends=[devtools]; }; rdpower = derive2 { name="rdpower"; version="2.2"; sha256="0v598jqka5skffbzb4knfmm5hfbg6gmwjgbclv774wrxxn62sj4z"; depends=[rdrobust]; }; + rdracor = derive2 { name="rdracor"; version="1.0.3"; sha256="014xa4n6av0g3ffplna8z25b00176war3h2pv20wclx9lq8wz9hs"; depends=[data_table httr igraph jsonlite purrr Rdpack stringr tibble tidyr xml2]; }; rdrobust = derive2 { name="rdrobust"; version="2.2"; sha256="1p9k8gd39090r5ml1sk30k3hvfns2v6laysbaswsn9i2ka70zj42"; depends=[ggplot2 MASS]; }; rdryad = derive2 { name="rdryad"; version="1.0.0"; sha256="00f1qwsbwg5jggm5b83nhk1lxyw272rv2kg77bcwqvlf3074c3mz"; depends=[crul curl hoardr jsonlite mime tibble zip]; }; - rdss = derive2 { name="rdss"; version="1.0.8"; sha256="0wzmiq53x5mid2lqvqgjgp8m7kz2wzlwkki1q561qmqbkkgk4ma8"; depends=[broom dataverse dplyr estimatr generics ggplot2 prediction purrr randomizr readr rlang tibble tidyr]; }; rdtLite = derive2 { name="rdtLite"; version="1.4"; sha256="0m2fxwz0h4rriw62g2hp20iw6ddbq5l8n80z9xgxk49n6pfm1ywj"; depends=[curl digest gtools jsonlite knitr provViz rlang rmarkdown sessioninfo stringi XML]; }; rdwd = derive2 { name="rdwd"; version="1.8.0"; sha256="0lb9r2wcdyix3im460wvv2q7yni3yixl7z8py4nbzp7ah0dc7g1z"; depends=[berryFunctions pbapply]; }; rdwplus = derive2 { name="rdwplus"; version="1.0.0"; sha256="0bcdpza4rbvfzn69zws5s2l32rs7m39a5h3zxyz4gszff3yn37fx"; depends=[rgrass sf stars stringr]; }; @@ -16555,6 +16827,7 @@ in with self; { reactable_extras = derive2 { name="reactable.extras"; version="0.2.0"; sha256="16cfldbfcz34jp0kfxiaz8l49ri2s9fr1r9kissqzs0xzjrp78in"; depends=[checkmate dplyr htmltools purrr reactable rjson rlang shiny]; }; reactablefmtr = derive2 { name="reactablefmtr"; version="2.0.0"; sha256="1r864j8ma1sas2fglw5hdkhf3lxrkri7mf2k5j8cpq7398kgzp94"; depends=[dplyr htmltools htmlwidgets magrittr purrr reactable sass shiny stringr tippy webshot]; }; reactlog = derive2 { name="reactlog"; version="1.1.1"; sha256="1njihrnq1x162nc2wk16kj1l0vpvk8xcdgjvj36arw4z8nv8wpah"; depends=[jsonlite]; }; + read_dbc = derive2 { name="read.dbc"; version="1.0.7"; sha256="1virjl00x1yzby6wvxjdf1kqbjgm2kkdv53b72c0jq4nrfrl55nw"; depends=[foreign]; }; read_gb = derive2 { name="read.gb"; version="2.2"; sha256="1ym285y6ii71lz3c68imvcdpw24jdxbdxzq9ia533dy5himclrg7"; depends=[rentrez]; }; read_gt3x = derive2 { name="read.gt3x"; version="1.2.0"; sha256="0xnl9vg3jvrz4zk721d1mhqpaflrgbs2vbbvfhhr3j394zlcf55b"; depends=[R_utils Rcpp]; }; readABF = derive2 { name="readABF"; version="1.0.2"; sha256="1lyjl3j62nrsml9vmgwbach9qm8mh2d2pxjj8sfbkkw79krvdnsd"; depends=[]; }; @@ -16564,23 +16837,22 @@ in with self; { readMLData = derive2 { name="readMLData"; version="0.9-7"; sha256="0l752j1jq37j9pdcsbmcb23b5l8fkfsbisfr3yjy3q4rxsphc7k6"; depends=[XML]; }; readMzXmlData = derive2 { name="readMzXmlData"; version="2.8.3"; sha256="1mh6rgy8s0rkvycv99p3zgw831pgzi5cacsj4awb7h4dl11sf8sf"; depends=[base64enc digest XML]; }; readNSx = derive2 { name="readNSx"; version="0.0.4"; sha256="1mllas238wvmpc094vw242h2gv9qgdyfml9k618ijp1s0mabnwcc"; depends=[cpp11 data_table fastmap hdf5r jsonlite R6]; }; - readODS = derive2 { name="readODS"; version="2.2.0"; sha256="1f87bnvjxalr0gp651axpyq4abzirxq7l3mirbak0c4b4l2phb1n"; depends=[cellranger cpp11 readr stringi tibble vctrs zip]; }; + readODS = derive2 { name="readODS"; version="2.3.0"; sha256="14849i7c48ilx212kp5zh33fkvps7j2b89kpy007wk5kzpw0y4hy"; depends=[cellranger minty stringi tibble vctrs zip]; }; readOffice = derive2 { name="readOffice"; version="0.2.2"; sha256="0dg7fwxdl41nrjqnxvh9rpz0la99iid0wy51gncjwrh3s85fj2ks"; depends=[magrittr purrr rvest xml2]; }; - readabs = derive2 { name="readabs"; version="0.4.14"; sha256="1m6n8w2hi2r0rrnmy9cnb5a0c37wlq23j6w49lx1zspsfqk6iqiv"; depends=[dplyr fst glue httr hutils labelled purrr readxl rlang rvest stringi tidyr xml2]; }; + readabs = derive2 { name="readabs"; version="0.4.16"; sha256="0f05x7lk2mvccqh6d9zwg35wjcjw59n8skl5n5awrp2hzpavdh57"; depends=[dplyr fst glue httr hutils labelled purrr readxl rlang rvest stringi tidyr xml2]; }; readbitmap = derive2 { name="readbitmap"; version="0.1.5"; sha256="14825906l326w59g6apy00j55jg3h5kx2r6s031f4gdkbrc7szbk"; depends=[bmp jpeg png tiff]; }; readbulk = derive2 { name="readbulk"; version="1.1.4"; sha256="1i9wax1dkl6xn37zmmlg2g4cxfzj88fyynrn3gv60sbw6s1a4r30"; depends=[plyr]; }; reader = derive2 { name="reader"; version="1.0.6"; sha256="1x489q3ljap4zpny68mx83mgxaqiwlkglcy57whwhnh33dd7qp4h"; depends=[NCmisc]; }; readit = derive2 { name="readit"; version="1.0.0"; sha256="1sq2spjgdc9rq8cr5i9qjmqd4vcf7cknpx5dndwjdqrv112y8bk9"; depends=[crayon haven jsonlite readr readxl]; }; readmet = derive2 { name="readmet"; version="1.7.1"; sha256="1q6d37d6s420ns8pdmqj002z2df35ci3jjvpjr5z53ii6fsf21mz"; depends=[]; }; readmission = derive2 { name="readmission"; version="0.1.0"; sha256="14jdy4w49g7v843hn3hiqgr33nns6hq62a62b0cyainbkvrgrgwk"; depends=[]; }; - readmnist = derive2 { name="readmnist"; version="1.0.6"; sha256="0f2kp5r04k47gpvbj8x13c47zsis3bw3y8f5f37sh6jggblqr004"; depends=[]; }; readmoRe = derive2 { name="readmoRe"; version="0.2-12"; sha256="18zxhnh8nzh3l5j94mrqf9l94bxvc82nzhl8sx5k9h08gj4f1zfw"; depends=[plyr R_utils readxl xml2]; }; readobj = derive2 { name="readobj"; version="0.4.1"; sha256="0ga0kk6n98zy8w9wc2fahn15bgsv73n4ncqgqb5ldyr4vjqxr2sr"; depends=[Rcpp]; }; readr = derive2 { name="readr"; version="2.1.5"; sha256="02p1jjal73j39r49ba4jlvbx8bdqmm96nsdp47igyv54w1gmm9hg"; depends=[cli clipr cpp11 crayon hms lifecycle R6 rlang tibble tzdb vroom]; }; readrba = derive2 { name="readrba"; version="0.1.8"; sha256="0hvz8zss5gh7r2w9ar3qh66k7vgbdikz942fp8pbzag8khah5rza"; depends=[dplyr httr lubridate purrr readxl rlang rvest stringr tidyr xml2]; }; readroper = derive2 { name="readroper"; version="0.9.3"; sha256="00l731hryx0igj0x7knljs9xq4gaczmsgw2hh05ngrl9y5s528dc"; depends=[readr]; }; readsdmx = derive2 { name="readsdmx"; version="0.3.1"; sha256="0rqi9kfhis2il0jw08rsbpk9ca0hm3i7vh9l3d0rvx5acck7z4z2"; depends=[Rcpp]; }; - readsdr = derive2 { name="readsdr"; version="0.2.0"; sha256="0s16m1cam69c83k6cdpysdfyqzh0ihyjdwdzv3hqxa9054iv5ifx"; depends=[deSolve dplyr magrittr purrr rlang stringi stringr xml2]; }; + readsdr = derive2 { name="readsdr"; version="0.3.0"; sha256="0jg7iz6bnilxb5l3xs13v13zg96cjdv24ijvhqw7kh1i10g5kdk2"; depends=[deSolve dplyr future future_apply magrittr progressr purrr rlang stringi stringr xml2]; }; readsparse = derive2 { name="readsparse"; version="0.1.5-6"; sha256="0njvk51057bi6chd6vqcfwif5b18943k67biyk4gk80rj01ggscc"; depends=[Matrix Rcpp]; }; readstata13 = derive2 { name="readstata13"; version="0.10.1"; sha256="18yr7nsz80dsxxsdgyi68k7506digjawk6khnzpvk5y80yz7hyqi"; depends=[Rcpp]; }; readtext = derive2 { name="readtext"; version="0.91"; sha256="0bzaq0vx6c83i4xf7p9zwka7h7jbv1qfy6w4v3kljx30hl048dpn"; depends=[antiword data_table digest httr jsonlite pdftools pillar readODS readxl streamR stringi striprtf xml2]; }; @@ -16588,7 +16860,7 @@ in with self; { readwritesqlite = derive2 { name="readwritesqlite"; version="0.2.0"; sha256="1p80ghra71j83xrrsqrpqkdaylp4sl1daw1paxw9jpajw679n986"; depends=[chk crayon DBI glue hms lifecycle rlang RSQLite sf tibble]; }; readxl = derive2 { name="readxl"; version="1.4.3"; sha256="0j2rkb012h0kvcm8n3817lgfir52dvmkwaxn7mij71gbxz6vpzky"; depends=[cellranger cpp11 progress tibble]; }; readxlsb = derive2 { name="readxlsb"; version="0.1.61"; sha256="1l7lklfk6ifjq6v4m0ha5k1fxak62zac2yn698r03x41k29382f7"; depends=[cellranger Rcpp xml2]; }; - readysignal = derive2 { name="readysignal"; version="0.0.9"; sha256="0fhm3xdxilmvs3r6vlbzydfq5xk0vxdkmpw49haknlwpvb18r403"; depends=[httr jsonlite progress rvest]; }; + ready4 = derive2 { name="ready4"; version="0.1.9"; sha256="0y7mjsah7a1f8jzz9mf3f9dvqnv30qdn2m4hccw0hyqvwcr1a4pf"; depends=[dataverse dplyr gh kableExtra lifecycle magrittr piggyback purrr rlang rvest stringi stringr tibble tidyRSS tidyselect]; }; realTimeloads = derive2 { name="realTimeloads"; version="1.0.0"; sha256="0ragbi8sczhs8hsbgxl4gmb8lwbmhnxiz88almpml2slsmx7nrrq"; depends=[data_table imputeTS mice signal TideHarmonics]; }; realtest = derive2 { name="realtest"; version="0.2.3"; sha256="1k2chcxpqrl4b4xfc80b8kvkn0nw8dfbl6n1965zjzszf7qaizkp"; depends=[]; }; reappraised = derive2 { name="reappraised"; version="0.1.1"; sha256="1f8qmxzn4vyn68dfc6c31jrjnymy6r7r4fg9qddx9cv01asfscws"; depends=[boot broom data_table dplyr epitools flextable ggplot2 ggpubr magrittr officer purrr readxl rlang tidyr vcd vcdExtra]; }; @@ -16602,9 +16874,11 @@ in with self; { rebus_datetimes = derive2 { name="rebus.datetimes"; version="0.0-2"; sha256="1hq5mr1v8ziikmkncb9ix11877rmzbjhz54nigwbkswbjwj7vhdf"; depends=[rebus_base]; }; rebus_numbers = derive2 { name="rebus.numbers"; version="0.0-1"; sha256="0drgszz0824j49c6jk9ry0cfjky7g843ldlxrx3g2vjp0v7hznj3"; depends=[rebus_base]; }; rebus_unicode = derive2 { name="rebus.unicode"; version="0.0-2"; sha256="185313wh4zpp6addfdr78pjhxzazlfwgsddwk02zrzblf4iwzjdm"; depends=[rebus_base]; }; + recalibratiNN = derive2 { name="recalibratiNN"; version="0.2.0"; sha256="10baqzbwggry9lwydr6vbsx5mx2jpbggm7dxamz9887min8n2lfa"; depends=[dplyr ggplot2 glue Hmisc magrittr purrr RANN Rdpack tibble tidyr]; }; recapr = derive2 { name="recapr"; version="0.4.4"; sha256="1grp8aczn3qjm8ihn2466v5yay60vwyf1x7jsmihgxlvgwki6dh7"; depends=[MASS]; }; - receptiviti = derive2 { name="receptiviti"; version="0.1.7"; sha256="1qshi14shq21pnpb3n8wwykz5qgzhc14mr50iiwyif6d0f4n82gb"; depends=[curl digest jsonlite progressr stringi]; }; + receptiviti = derive2 { name="receptiviti"; version="0.1.8"; sha256="1z8f8wky1r712mi3by4jf0iv973i3bppgslj7kkvzwnrbij458fj"; depends=[curl digest jsonlite progressr stringi]; }; recexcavAAR = derive2 { name="recexcavAAR"; version="0.3.0"; sha256="0b91jbgqzkgzvk658ckk639yyz1daa0xql3qgl0kzgqg68d53x20"; depends=[kriging Rcpp]; }; + rechaRge = derive2 { name="rechaRge"; version="1.0.0"; sha256="05in0rv36g282f79b0f3crn1y7azfvw7863n8c583jgvhmvndqsn"; depends=[airGR data_table doFuture foreach future hydrostats lubridate ncdf4 plyr progressr R_utils raster sp zoo]; }; rechonest = derive2 { name="rechonest"; version="1.2"; sha256="0vpff8q5p6in7vjyl62bx3wmksravcg4mpx20qlgy5ia47vyhqp2"; depends=[httr jsonlite RCurl]; }; recipes = derive2 { name="recipes"; version="1.0.10"; sha256="1m4v9j7by0w5avqljmwck1jsgjgwc8rsby0affa5zii3xkvvvifg"; depends=[cli clock dplyr ellipsis generics glue gower hardhat ipred lifecycle lubridate magrittr Matrix purrr rlang tibble tidyr tidyselect timeDate vctrs withr]; }; reclin2 = derive2 { name="reclin2"; version="0.5.0"; sha256="08jf6r74fmsj2bvhz76vf74hphg8543x4wj1dnbsj44xjzh6abi4"; depends=[data_table lpSolve Rcpp stringdist]; }; @@ -16614,7 +16888,6 @@ in with self; { recodeflow = derive2 { name="recodeflow"; version="0.1.0"; sha256="0qi5y1rbdw6dcvkl8gw9fh7rcb0f6ckig8464sgxslgf7cdk2gcz"; depends=[dplyr haven magrittr sjlabelled stringr tidyr XML]; }; recogito = derive2 { name="recogito"; version="0.2.1"; sha256="0hirzw446r192gdvscgqmm7n3bh2fy0qkf9pqnqm2vziv1cqf1bq"; depends=[htmltools htmlwidgets jsonlite]; }; recolorize = derive2 { name="recolorize"; version="0.1.0"; sha256="1biiyqqvnm3310gc9q0apwqfmvmh6cnj9pc77l44js4x3576w3aq"; depends=[abind colorRamps imager mgcv pavo plot3D plotfunctions png raster]; }; - recom = derive2 { name="recom"; version="1.0"; sha256="13g8wq4qaa850r7q09cr9x0brxki98h86cq83573jcv4lh3r97yq"; depends=[Rcpp]; }; recombinator = derive2 { name="recombinator"; version="1.0.1"; sha256="1dbsqig2jjp3zypcqxf9c2brb09pv6xikmh6fhz5vgxy5wkyivks"; depends=[crayon]; }; recometrics = derive2 { name="recometrics"; version="0.1.6-3"; sha256="1i7842k6qw9zbcslfwgdfd7358jh63aybi4mifq6knc8qm577nqk"; depends=[float Matrix MatrixExtra Rcpp RhpcBLASctl]; }; recommenderlab = derive2 { name="recommenderlab"; version="1.0.6"; sha256="1dxpdgmv3hfwix1w8lzc0ijcd8myslsqnznr5pbwsrh7wypwqk1h"; depends=[arules irlba Matrix matrixStats proxy recosystem registry]; }; @@ -16627,11 +16900,10 @@ in with self; { recurrentpseudo = derive2 { name="recurrentpseudo"; version="1.0.0"; sha256="1vnljzn933k4wcc751r6s67dfjz1mrwvcb37yziv6qn8zimn8xrz"; depends=[dplyr geepack magrittr prodlim stringr survival]; }; recurse = derive2 { name="recurse"; version="1.3.0"; sha256="05x2qcabxw0xgirvb39si1j8szrz328fx1f3v8yvdysmfa3bg408"; depends=[Rcpp]; }; red = derive2 { name="red"; version="1.6.1"; sha256="1xij1wshb5bv5zd9svhgprdjpn3snxb7wjqjdrqkbgs8y49cixx6"; depends=[BAT dismo gdistance geosphere jsonlite predicts sp terra]; }; - redR = derive2 { name="redR"; version="1.0.1"; sha256="0bd1jzjip6p449m9ysi4kybxqljh2wj8z9mrgyk1cy08bjivd1cd"; depends=[imager]; }; reda = derive2 { name="reda"; version="0.5.4"; sha256="1lrfbcvxgbbpi7l3vls3rdj8y3w30gg5f1fjcfscmykvp0i01j3d"; depends=[ggplot2 Rcpp RcppArmadillo splines2]; }; redbookperu = derive2 { name="redbookperu"; version="0.0.2"; sha256="0pf6ihk5k4milzz9j2y5wsxj7ishadlx1zvffhkw600c3i7ssi5b"; depends=[]; }; - redcapAPI = derive2 { name="redcapAPI"; version="2.8.4"; sha256="1a1vxw290ff1h5qv02139lxp1im5cfybhcg3ws8yghra4237y1bg"; depends=[checkmate chron getPass httr keyring labelVector lubridate yaml]; }; - reddPrec = derive2 { name="reddPrec"; version="2.0.1"; sha256="0qi81d0yjjw7iqzi88zrdiixmiw0a06arlc7yxl3nv0q35dgmapz"; depends=[doParallel foreach qmap reshape terra]; }; + redcapAPI = derive2 { name="redcapAPI"; version="2.9.1"; sha256="1zz5dwd1i7j0d9qf79zmlqb5i4d4qk59sg7qqzb6y8vmp1ldqwm7"; depends=[checkmate chron getPass httr keyring labelVector lubridate yaml]; }; + reddPrec = derive2 { name="reddPrec"; version="2.0.3"; sha256="0cxssbqkbnjphankwa7hrdcf76l9ss8zjnk1981yd14nh8lhy459"; depends=[doParallel foreach qmap reshape terra]; }; redditadsR = derive2 { name="redditadsR"; version="0.1.0"; sha256="00kn34d8277f8m4xigr28lpq4s55lvli4xw70g4cbsir7m6ibklv"; depends=[jsonlite]; }; redist = derive2 { name="redist"; version="4.2.0"; sha256="1ibwldd24zj2fhpn18q4381mp82p7wbv61xmqm2lzybil92y800w"; depends=[cli doParallel doRNG dplyr foreach ggplot2 patchwork Rcpp RcppArmadillo RcppThread redistmetrics rlang servr sf stringr sys tidyselect vctrs]; }; redistmetrics = derive2 { name="redistmetrics"; version="1.0.7"; sha256="0r9fa0p65bpklgcb5nbbsm2s3vhrcbbp4glciglmw185vfjqg7s2"; depends=[cli doParallel dplyr foreach geos magrittr Rcpp RcppArmadillo RcppThread rlang sf vctrs wk]; }; @@ -16642,14 +16914,16 @@ in with self; { ref_ICAR = derive2 { name="ref.ICAR"; version="2.0.1"; sha256="1mix12qxap6rqs6dg4nlbm9vlkzxgr1ivkjjkzap3k0km0agldx9"; depends=[classInt coda dplyr ggplot2 gtools MCMCglmm mvtnorm pracma Rdpack sf sp spdep]; }; refdb = derive2 { name="refdb"; version="0.1.1"; sha256="1g30n7jvn532nhbn4mrfkfym40vw1ha0q8yi3d3d3v86gyr5ga4n"; depends=[ape bioseq bold dplyr ggplot2 ggraph igraph leaflet readr rentrez rlang rmarkdown stringr taxize tibble tidyr xml2 yaml]; }; refer = derive2 { name="refer"; version="0.1.0"; sha256="1y0n4xzhn96d25mwjr0735w990rz2kbxhcpsc5k5vwbwq64q6wsd"; depends=[eList matchr]; }; - referenceIntervals = derive2 { name="referenceIntervals"; version="1.3.0"; sha256="0q6rpz8llfsk86y8i1sdlqi97gcfx9k7q510pnz9nr7ag0w6w5mc"; depends=[boot extremevalues MASS outliers]; }; + referenceIntervals = derive2 { name="referenceIntervals"; version="1.3.1"; sha256="1vgiy0ds982y9mjnpigzhmckxwj010ymfip2x2gfsqrc320gl2hq"; depends=[boot extremevalues MASS outliers]; }; refineR = derive2 { name="refineR"; version="1.6.1"; sha256="1bwafqcvsvmb6svdcr4ri31wvyzws33xfxrf42g4dzx03q0wwkin"; depends=[ash future future_apply]; }; refinr = derive2 { name="refinr"; version="0.3.3"; sha256="05shfsif1s2pyyxxrrjg8qlr1bdp3yxviw2jjll3p5r65nn3gnh1"; depends=[Rcpp stringdist stringi]; }; refitME = derive2 { name="refitME"; version="1.2.2"; sha256="125hxp24vlwg3g0v1rlhi3zbvnnzyj95a6d9f52f98hf6bp05yhb"; depends=[caret dplyr expm MASS mgcv mvtnorm sandwich scales SemiPar VGAM VGAMdata]; }; + reflectR = derive2 { name="reflectR"; version="2.1.3"; sha256="1jf8zk4gca78rf7fjv0ksfag0n3i5b3n8wn22cgxrlky02sp7nd0"; depends=[stringr]; }; reflimR = derive2 { name="reflimR"; version="1.0.6"; sha256="02phm6jjhwdcc82vw292kcwwrprl7zcd8fyvb479rs3c1ippkrhc"; depends=[]; }; - reformulas = derive2 { name="reformulas"; version="0.2.0"; sha256="1bjq9ncpb4jn4q0hibhmnq5s9izvixac7fvw90cyk7r24kkv10mr"; depends=[Matrix Rdpack]; }; + reformulas = derive2 { name="reformulas"; version="0.3.0"; sha256="0p8v8j0xw4np84vvkbd41r4n1rvj5awlrnpbvqccgjasspl07smh"; depends=[Matrix Rdpack]; }; refreg = derive2 { name="refreg"; version="0.1.1"; sha256="0dqlqh3ndpqjab2cz3aikb9srhmyj3j133lwcnajgycwr5334mri"; depends=[doParallel foreach ggplot2 gridExtra KernSmooth ks matrixcalc mbend mgcv misc3d pracma RColorBrewer rgl sp stringr]; }; refreshr = derive2 { name="refreshr"; version="0.1.0"; sha256="0p240a7f2yajrd5qqjv0la49vm2cs6i32zyxxjcs6rd2a1z9xwfs"; depends=[crayon dplyr lubridate stringr]; }; + refseqR = derive2 { name="refseqR"; version="1.0.2"; sha256="076ai3jgpll30fx7hnvy5b11n7v4c9vgsnkw98pfddi7p5xxiw2f"; depends=[Biostrings IRanges rentrez tibble]; }; refset = derive2 { name="refset"; version="0.1.1"; sha256="1xbwvm9066g3f7pd34z5jh04vph4ddy2lkcgmf4kiwa1k5czpwg1"; depends=[]; }; refuge = derive2 { name="refuge"; version="0.3.3"; sha256="0cq62rgawlam4j4h4sz4zvkgi0x21k4syy4vh7i40bxrq0z9ysyz"; depends=[dplyr httr jsonlite tibble]; }; refugees = derive2 { name="refugees"; version="2023.6.0"; sha256="1sy93zg4vjv02ga96vzhdjvgnwmv3gmd3m7w2fplah7d49i3z85v"; depends=[tibble]; }; @@ -16657,13 +16931,12 @@ in with self; { refund_shiny = derive2 { name="refund.shiny"; version="1.0"; sha256="1qzz9q6bxl9hdr7mqhmva96x12g62m9h9mb6yqhq6003w7cz186g"; depends=[dplyr ggplot2 gridExtra lme4 plotly refund reshape2 shiny tidyr]; }; regDIF = derive2 { name="regDIF"; version="1.1.1"; sha256="0b7sdkykvdgzss1ipqsxfna870g8nry1aa83gsm43fp2y9kmv62z"; depends=[foreach statmod]; }; regRSM = derive2 { name="regRSM"; version="0.5"; sha256="0nbp3yjk9r7qvwm7wla39155rmqnvpdb720iq3b0hcy1bbsxbk9s"; depends=[doParallel foreach Rmpi]; }; - regcensus = derive2 { name="regcensus"; version="1.0.1"; sha256="0sab5pwbnc06vds23nzcargk8igfngsyqhvnh0q40g95b55fm0c8"; depends=[dplyr httr jsonlite stringr tidyverse]; }; regclass = derive2 { name="regclass"; version="1.6"; sha256="0m974k3yhf0dgv5f1qjs8c53mam0cll3cjn35ywfrmlfla0wlhf5"; depends=[bestglm leaps randomForest rpart rpart_plot VGAM]; }; regda = derive2 { name="regda"; version="1.0"; sha256="0zdipzkf8yil1cf142g66cls9d2yabzag9k4nm9nab0nyfidkdcw"; depends=[doParallel foreach Rfast Rfast2]; }; regexPipes = derive2 { name="regexPipes"; version="0.0.1"; sha256="1hk0rhvmgzcyf5cyl8hjznl3ll25kpasqikfr6nxd6ian2slvmmb"; depends=[]; }; regexSelect = derive2 { name="regexSelect"; version="1.0.0"; sha256="0xnb9qa8l63ang4r40ky4qhlrs5mbzvmj98dgij26j3mq1ys1pa7"; depends=[shiny shinyjs]; }; reghelper = derive2 { name="reghelper"; version="1.1.2"; sha256="1vd8kd719kyjp65zym6zx3vax1q2kbhpl6la71d5aa59s54ylri3"; depends=[ggplot2 lme4 MASS nlme rlang]; }; - regional = derive2 { name="regional"; version="0.3.3"; sha256="0gwm3lqmils8dpv0g0919caqifa90lv3vrjqcky33i7jd18c20g2"; depends=[philentropy terra]; }; + regional = derive2 { name="regional"; version="0.4.4"; sha256="1z41hwkgh8c9xzil95gam6d1pi4m2788xc26d0r0wbynrxjdpqq4"; depends=[philentropy terra]; }; regioncode = derive2 { name="regioncode"; version="0.1.2"; sha256="1q3d2s6x79i7v7phspabk3m7kld74jplv5wda9ybpyv1vzdinx99"; depends=[dplyr pinyin]; }; regions = derive2 { name="regions"; version="0.1.8"; sha256="16i0w1my9zfwh0p9qvc3vcid0r6rb6gbvvrx03vbg81l6cxrglr4"; depends=[assertthat countrycode dplyr glue here magrittr purrr readxl rlang stringr tibble tidyr tidyselect]; }; registr = derive2 { name="registr"; version="2.1.0"; sha256="033kvhcx27g0vw85gi8xb035wijqb6xsg8jjskqpp4l1gw3a1v1c"; depends=[dplyr gamm4 lme4 magrittr MASS Matrix mgcv pbs purrr Rcpp RcppArmadillo tidyr]; }; @@ -16692,10 +16965,12 @@ in with self; { rehydratoR = derive2 { name="rehydratoR"; version="0.5.2"; sha256="1d94m9hv1l72l9lph2vzbq4qqbfcgyhv2qk82p9vb8l2ckavjzvv"; depends=[dplyr jsonlite rtweet tibble]; }; reinstallr = derive2 { name="reinstallr"; version="0.1.5"; sha256="0yr1fzfahxqffjh5vm6y6b0iay8p0cirlzq2z4hlz7nci57fx5yr"; depends=[]; }; reinsureR = derive2 { name="reinsureR"; version="0.1.0"; sha256="19ayikzcq6z4i7xrlby76yy2nwvrsv6xdfrmvzyr7rz934flh8kd"; depends=[data_table dplyr ggplot2 viridis viridisLite]; }; + relMix = derive2 { name="relMix"; version="1.4"; sha256="17b0121yqnkl36jkn03qzlkhibl528jz95rzrj602jf2gpah4a9x"; depends=[Familias flextable gWidgets2 gWidgets2tcltk officer pedFamilias pedtools]; }; relSim = derive2 { name="relSim"; version="1.0.0"; sha256="1f2dz25hkh2ak7cypn3zj9rabj3z7d59q4yhrrq4f6mzdki80d15"; depends=[multicool Rcpp rvest stringr xml2 xtable]; }; relaimpo = derive2 { name="relaimpo"; version="2.2-7"; sha256="1430p6kxh582k0saagns6mxz7qp6myf6n66hp1p02isl61w3w6sa"; depends=[boot corpcor MASS mitools survey]; }; relatable = derive2 { name="relatable"; version="1.0.0"; sha256="0147gin6dn76gg7gassar64f0w2gny1sh0k60v7914qhb4sj4s7i"; depends=[compare]; }; relations = derive2 { name="relations"; version="0.6-13"; sha256="1nnr0kcr3whbwzi36sg7wn46jp7r0hfkvcwlybvjsjhczcvc6ngq"; depends=[cluster sets slam]; }; + relcircle = derive2 { name="relcircle"; version="1.0"; sha256="109fc4zngsrwxszij1y4y0mvzfnyv6f90d2imfrppa5aaivrq07j"; depends=[]; }; reldist = derive2 { name="reldist"; version="1.7-2"; sha256="1j99j9a0igb9nwkp7fkqqkmvyz770xmbi1d25pbnaz7d2jy6q26r"; depends=[densEstBayes mgcv]; }; relevance = derive2 { name="relevance"; version="2.1"; sha256="1x6abdraxzyf1anmxsx82g4am4hamj0cpayvhbph51dcf49wkvh0"; depends=[]; }; relevent = derive2 { name="relevent"; version="1.2-1"; sha256="13nvz6gsjqm10hc9fy9vf4x39grj65ynlmy9v4fww02pzih89zjj"; depends=[coda sna trust]; }; @@ -16711,7 +16986,7 @@ in with self; { rematch = derive2 { name="rematch"; version="2.0.0"; sha256="09jwg3glp32q4ml4khhzi8j7bzg9zhqqdg1m6r8gibh756zzgnhm"; depends=[]; }; rematch2 = derive2 { name="rematch2"; version="2.1.2"; sha256="1fzpz8vhghw8ygwg6rsvfy3783pqk7ch029i5851lwypkplvz77y"; depends=[tibble]; }; remedy = derive2 { name="remedy"; version="0.1.0"; sha256="1lsa5az9jwy4ngjmfzcb7qj4wm8phsgajlnp5kwa4nav0g1dhb4s"; depends=[knitr rematch2 rstudioapi]; }; - remify = derive2 { name="remify"; version="3.2.5"; sha256="0l0haz3g9x6ycsiiz760dmcq5kclxyyhba69qvp7s9jhcacf6y12"; depends=[igraph Rcpp RcppArmadillo]; }; + remify = derive2 { name="remify"; version="3.2.6"; sha256="062bgggz4bkzm3ijpghsrlf9q813zmzisxdwgzlizpqhzppwvzig"; depends=[igraph Rcpp RcppArmadillo]; }; remindR = derive2 { name="remindR"; version="0.0.1"; sha256="0b27v2qm3z8l9vcng8f0rkphjidxkw5n017ysflx180qjizqq632"; depends=[assertthat]; }; remiod = derive2 { name="remiod"; version="1.0.2"; sha256="1darwljspxm6mkkp0d7xx375kvhlfwpzxc93yr2mb0mwi2877yi9"; depends=[coda data_table doFuture foreach future ggplot2 JointAI mathjaxr Matrix mcmcse ordinal progressr rjags survival]; }; remmy = derive2 { name="remmy"; version="0.1.0"; sha256="180b943fb1134r22avidv0s8gvsbx21kpl865l1xfzz95gzj6d7w"; depends=[curl httr2]; }; @@ -16720,15 +16995,15 @@ in with self; { remotes = derive2 { name="remotes"; version="2.5.0"; sha256="0345s9q0fyv0wrxkklcy97h7bi85jfb3vwkh80px926d4qa3yrjd"; depends=[]; }; rempsyc = derive2 { name="rempsyc"; version="0.1.7"; sha256="1s4iv2ssz12pppjc9glhnryfkqnafid3fz9gmvhs9k5jk3cnq4pa"; depends=[dplyr rlang]; }; remss = derive2 { name="remss"; version="1.0.1"; sha256="15s3qvcfyp1880ddzpvgiw3q5av21052iy1vnpw0hib5pb7xfkfb"; depends=[survival]; }; - remstats = derive2 { name="remstats"; version="3.2.1"; sha256="1n1byjjaj1d87s3289szsr3in67fkx4dqyy2dzy86kijzvx2qinl"; depends=[Rcpp RcppArmadillo RcppProgress]; }; - remstimate = derive2 { name="remstimate"; version="2.3.8"; sha256="0i94w0wrdwcflay3a7lx85wi7mqkrl74zbsbf30sb3kr81iivjzh"; depends=[mvnfast Rcpp RcppArmadillo remify remstats trust]; }; + remstats = derive2 { name="remstats"; version="3.2.2"; sha256="0ismgr1kj35hgaiam0xs03y28jmxl030l3xb46c45cdg44avhhdk"; depends=[Rcpp RcppArmadillo RcppProgress]; }; + remstimate = derive2 { name="remstimate"; version="2.3.11"; sha256="0sa1fxpy9cpfxkm9pkb7kq6qbkv9bvq900j2182yrsx4g02sxa41"; depends=[mvnfast Rcpp RcppArmadillo remify remstats trust]; }; renpow = derive2 { name="renpow"; version="0.1-1"; sha256="0kbfpzr17fvf5zzxpzdhvfmrqmlkba2w3rzxl5q5ac1w3h75gfhc"; depends=[]; }; rentrez = derive2 { name="rentrez"; version="1.2.3"; sha256="0x1g2f6hvkqqlb39z8m5qxhcvsizddic5i7rpqw0wy77xfbna9gv"; depends=[httr jsonlite XML]; }; - renv = derive2 { name="renv"; version="1.0.5"; sha256="07y1xqnx5jkgk0cqgf8c4p5vm3qy87zjl31zv6s0jssy3v7amq4p"; depends=[]; }; + renv = derive2 { name="renv"; version="1.0.7"; sha256="01s5g4w96s0jz9xa1gdj8y4pfvz8cf3gg0kz2smh6f3l4f5baq3v"; depends=[]; }; renz = derive2 { name="renz"; version="0.2.1"; sha256="06zj7qkpjvl0zy33d67g4ig9z3mvay66bxz08l0sshgkas9nxbjq"; depends=[VGAM]; }; repairData = derive2 { name="repairData"; version="0.1.0"; sha256="1l5ag952165b0nm59mp9v768dp53xm51ckg01i4c6l04qfzx1lm7"; depends=[]; }; - repana = derive2 { name="repana"; version="2.1.0"; sha256="11yp1l9s9j9spm1nvz0zc55ajnjm96wm1gik0h63ynnhv2yfcsn3"; depends=[config DBI digest dplyr lubridate magrittr openxlsx pool processx readr rmarkdown rstudioapi yaml]; }; - repeated = derive2 { name="repeated"; version="1.1.7"; sha256="15d4igg4s87rj22kxi1sc1chfd1z7v08q6cvglabysaymbz1nbmw"; depends=[rmutil]; }; + repana = derive2 { name="repana"; version="2.2.0"; sha256="1iyxyq8fl7cbbw374xc32fsrxsl40306anvyia6fwjr5j5dy7v5g"; depends=[config DBI digest dplyr lubridate magrittr openxlsx pool processx readr rmarkdown rstudioapi yaml]; }; + repeated = derive2 { name="repeated"; version="1.1.8"; sha256="07bm52dwkd4hpk57k7rlmcac2kfb8ri2znss2bcvjasy4pacm3jd"; depends=[rmutil]; }; repec = derive2 { name="repec"; version="0.1.0"; sha256="0alr9fbmfxmnnnn1qymy65crcycynwz435jj0vangbb4p0qhv8pm"; depends=[jsonlite]; }; repello = derive2 { name="repello"; version="1.0.1"; sha256="118m0vybgf5ys856zivn7gvjxqq163gkrhrpyl1avylib4bp3mcq"; depends=[dplyr httr stringr]; }; repfdr = derive2 { name="repfdr"; version="1.2.3"; sha256="0jpk44arg1jib0h2w90h851bs5cd1ss32fab9bfvf9iir2jk8985"; depends=[Rcpp]; }; @@ -16754,8 +17029,8 @@ in with self; { represtools = derive2 { name="represtools"; version="0.1.3"; sha256="00hnvzkkcl9d3k115i5l9gs0wah5d11amn7q62m1j158lkqlcfza"; depends=[whisker]; }; reprex = derive2 { name="reprex"; version="2.1.0"; sha256="0ld90pkw2r7z115xdnyqk4p39vnxrc8jnn57sl4bkpg5frczw38a"; depends=[callr cli clipr fs glue knitr lifecycle rlang rmarkdown rstudioapi withr]; }; reproducer = derive2 { name="reproducer"; version="0.5.3"; sha256="0nm8x1bwigbvkz7bbr313fmxb9ypk6dw2yl9g1cppdws2c6rq1mr"; depends=[dplyr GetoptLong ggplot2 gridExtra httr jsonlite lme4 MASS metafor nortest openxlsx readr reshape stringr tibble tidyr xtable]; }; - reproducible = derive2 { name="reproducible"; version="2.0.10"; sha256="0q0wgbyr2gqjrxb1jwb6ysyqbgpsc0nq6501smqgrmhxfavb0m1d"; depends=[data_table digest filelock fpCompare fs lobstr]; }; - reproj = derive2 { name="reproj"; version="0.4.3"; sha256="0bcg5bz2sl4d31iwr55nwr85p1jna9fpbcli26lf04dwznwmx0rl"; depends=[crsmeta PROJ proj4]; }; + reproducible = derive2 { name="reproducible"; version="2.1.0"; sha256="0axrhjzd8wv17f2djx6yg8f4kiwrcs267jwj4h4a10jykqrl9p4v"; depends=[data_table digest filelock fpCompare fs lobstr]; }; + reproj = derive2 { name="reproj"; version="0.7.0"; sha256="1r2m8j75hmy61h7ld0ra1kpigr1ax6zap8kjxkgjkxcdlqznbbxj"; depends=[crsmeta PROJ proj4]; }; repsd = derive2 { name="repsd"; version="1.0.1"; sha256="102rnc2g31aijhwsmad86k2wjcvbvzi51c2rp0wk711riq5v7cm1"; depends=[progress]; }; repurrrsive = derive2 { name="repurrrsive"; version="1.1.0"; sha256="123hf7qhhs4jyjbmw4246zmhyngjq7r9ihgg3nxg594kja40khd9"; depends=[tibble]; }; reqres = derive2 { name="reqres"; version="0.2.5"; sha256="1j8gxacbfnaqvrhjqy851yb8shc73issv08yca6mbnx6aq34wcrd"; depends=[assertthat brotli jsonlite R6 stringi urltools webutils xml2]; }; @@ -16779,28 +17054,27 @@ in with self; { resilience = derive2 { name="resilience"; version="2023.1.1"; sha256="0pa0c5l3jm5szn7vffg030krn7f9lz9riqvjz9n7waiszfs0mzdr"; depends=[doParallel foreach nptest]; }; reslife = derive2 { name="reslife"; version="0.2.1"; sha256="17n9p0kj5sx0zhdyfs4s15rwjkcx9hmly8m51xyv2y70vr1nl4cc"; depends=[flexsurv gsl pracma]; }; reslr = derive2 { name="reslr"; version="0.1.1"; sha256="0hklhkr0fxrhhi6apskq498z1vv1w90zsfvvc344rmj9qid2lj2a"; depends=[data_table dplyr fastDummies fields geosphere ggplot2 magrittr ncdf4 plyr posterior purrr R2jags stringr tidybayes tidyr]; }; - resmush = derive2 { name="resmush"; version="0.1.0"; sha256="1zfjnih4x452i3wnnw796qwq9qy89nlimj2lhn4xqkvkgi7ilk00"; depends=[cli curl httr2]; }; + resmush = derive2 { name="resmush"; version="0.1.1"; sha256="1qmgkxnbdlb544vyzwcsinpdafgq07bligx05pilcz73kic4bwla"; depends=[cli curl httr2]; }; resourcer = derive2 { name="resourcer"; version="1.4.0"; sha256="0rffkz2ybvr58jpa3kfiw4s3rk0cmrm9r5ca2abbzlcny7kxb7v5"; depends=[httr R6]; }; - respR = derive2 { name="respR"; version="2.3.2"; sha256="1nywhy50zbk4lvygm9vlkdya3pz1x3mkv8560r2nbcd8yd4w4y71"; depends=[data_table dplyr glue lubridate magrittr marelac purrr readxl roll segmented stringr xml2]; }; + respR = derive2 { name="respR"; version="2.3.3"; sha256="1dcgfqln7q2y1mvgr85f5linsscj6rsla1dbnrmf81gci0lzk19k"; depends=[data_table dplyr glue lubridate magrittr marelac purrr roll segmented stringr xml2]; }; respirometry = derive2 { name="respirometry"; version="1.5.0"; sha256="17sfg3c1y7yhyyvq7krii2vazyvnqf1l0ifcdqsr477wwlnwyynr"; depends=[birk dplyr lubridate marelac measurements minpack_lm plyr rlang seacarb segmented]; }; responsePatterns = derive2 { name="responsePatterns"; version="0.1.1"; sha256="0ym6jbacsi4lv9rcw3k80wiil94ymivm55c4hz6hwbv54ybkzlcj"; depends=[]; }; - restatapi = derive2 { name="restatapi"; version="0.22.5"; sha256="1vaj20z45y3af1k38fqcxxkpn4fb8arwgm0q5jnf3shfq6ddnzyh"; depends=[data_table rjson xml2]; }; + restatapi = derive2 { name="restatapi"; version="0.23.1"; sha256="0sbyy35c7klwb9j99krmfr2hww16n51qmw1xdif32kmdq9sjiqdc"; depends=[data_table rjson xml2]; }; restatis = derive2 { name="restatis"; version="0.1.0"; sha256="0y36qdnadmcdmwik2iyjh8h47jchrbwpal8djy29hx7q1140ra2r"; depends=[askpass httr2 memoise readr tibble vctrs]; }; restaurant = derive2 { name="restaurant"; version="0.1.0"; sha256="1dr9nw5xkll1wnra2xi8dg2yiv85nibdg1i9lsn44v7cgr9vb32j"; depends=[]; }; restez = derive2 { name="restez"; version="2.1.4"; sha256="1jzffv1lsxwa2dvkqx48ldwffghkg91vz99d9l3kjdxmg9gb8y9k"; depends=[ape assertthat cli crayon curl DBI duckdb fs rentrez stringi]; }; restfulr = derive2 { name="restfulr"; version="0.0.15"; sha256="14p6h0gjknqy5z2fprxw7waf4p0cd2qmp18s7qig4ylqn8gqzzs0"; depends=[RCurl rjson S4Vectors XML yaml]; }; restimizeapi = derive2 { name="restimizeapi"; version="1.0.0"; sha256="1ss6fng5pmqg6cafc256g9ddz8f660c68ysxfan6mn4gdaigz7lb"; depends=[RCurl RJSONIO]; }; restoptr = derive2 { name="restoptr"; version="1.0.6"; sha256="0m7nw277qgjdxfwx3i1k73l93rqyf766l2af9ymap9dl7hrp8jaq"; depends=[assertthat crayon magrittr rJava terra units]; }; - restorepoint = derive2 { name="restorepoint"; version="0.2"; sha256="0pjp5dvycvfg75hhj8lrr2lrjn6n6bqj0ziwyd87lyi15b9j8w4s"; depends=[]; }; - restriktor = derive2 { name="restriktor"; version="0.5-30"; sha256="1qlb892rx2i42mlidl5dm20a848j8cca8zq1d100la2829g9k49g"; depends=[boot ggplot2 ic_infer lavaan MASS mvtnorm norm quadprog]; }; + restriktor = derive2 { name="restriktor"; version="0.5-60"; sha256="0ksb1jqrkvqjhxcfx4wc6f27p097228h5ck3682409lmj3amp11r"; depends=[boot ggplot2 glue ic_infer lavaan MASS mvtnorm norm pbapply quadprog tmvtnorm]; }; result = derive2 { name="result"; version="0.1.0"; sha256="031vviwvn85k7hl04c4hqxycj8mnr2j00gi2jqpwdxrxjaaf1dzb"; depends=[]; }; resumer = derive2 { name="resumer"; version="0.0.5"; sha256="0k3s2i102hvsag7jiahgfpjc09646xjpxcpv5x3d91ch3xipdc0b"; depends=[dplyr rmarkdown useful]; }; retel = derive2 { name="retel"; version="0.1.0"; sha256="1rajv6y3zsk7hd9wr7szxi685rh377hhvj69rvg77fn0pk56g40b"; depends=[checkmate Matrix matrixcalc nloptr]; }; rethinker = derive2 { name="rethinker"; version="1.1.0"; sha256="02zfx08s5xisv1v4y16iqbddi9kb3fcr249b3414fzvs4nm5as94"; depends=[rjson]; }; rethnicity = derive2 { name="rethnicity"; version="0.2.4"; sha256="1h8d9q06dc98l55lqmjxf69ngvdj6r9fcck1bdvk0rin40q07zfk"; depends=[cli Rcpp RcppEigen RcppThread]; }; - reticulate = derive2 { name="reticulate"; version="1.35.0"; sha256="0693gzb7ihx4qzsr07k664k5r8vygcinwbdiiccmq9lshl1g64sy"; depends=[here jsonlite Matrix png rappdirs Rcpp RcppTOML rlang withr]; }; + reticulate = derive2 { name="reticulate"; version="1.37.0"; sha256="0zn7rjdfrjhbghngaiir3safidbwqk3hpw6ik227gbhmm3zlk1l9"; depends=[here jsonlite Matrix png rappdirs Rcpp RcppTOML rlang withr]; }; retriever = derive2 { name="retriever"; version="0.2.1"; sha256="0vachj8rzh8g55y18hz85bsrzr86614frdmr7wz6hszgiq8qgcxy"; depends=[pbapply preprocessCore]; }; - retrodesign = derive2 { name="retrodesign"; version="0.2.1"; sha256="19bhfmbhd2q4zlkgxm0v563rr4r30d79hsxr3micnzql4hgar2zp"; depends=[]; }; + retrodesign = derive2 { name="retrodesign"; version="0.2.2"; sha256="0iq1xiqhqp2na9dqyx30hyzsjqi22xq0z11j1zb6h2l2rxbx163p"; depends=[]; }; retroharmonize = derive2 { name="retroharmonize"; version="0.2.0"; sha256="10fwmm91p3dgad99a7imkg9cjlk0gy2bkpmzgfr6s9bp07splj6i"; depends=[assertthat dplyr fs glue haven here labelled magrittr pillar purrr rlang snakecase stringr tibble tidyr tidyselect vctrs]; }; retrosheet = derive2 { name="retrosheet"; version="1.1.6"; sha256="0j4c3a7rm26gx0avn4wgz0jzgff23hxb35j04hdly2h36vhw38xf"; depends=[httr rvest stringi stringr xml2]; }; retry = derive2 { name="retry"; version="0.1.1"; sha256="0vjfck3yf52zxpllp8ffqcm0cqps84p0kr1b89kih5068dxl3kr3"; depends=[later rlang]; }; @@ -16827,7 +17101,7 @@ in with self; { rfVarImpOOB = derive2 { name="rfVarImpOOB"; version="1.0.3"; sha256="1f0ljy51xqqrncdg4xpic6ir8zlgvp952pr0s217v7ybgdzs42v6"; depends=[dplyr ggplot2 ggpubr magrittr randomForest ranger titanic]; }; rfacebookstat = derive2 { name="rfacebookstat"; version="2.10.0"; sha256="179wwpyzhli8h1skn7y3jjms3rigfrgxsv9v0n0npwr1g0r5sv8r"; depends=[dplyr httr jsonlite pbapply purrr stringr tidyr tidyselect]; }; rfacts = derive2 { name="rfacts"; version="0.2.1"; sha256="0h2ryyl5zc3pxi85y0qwadfz7sdzz0m6ilwzabw317sb0z5lms5b"; depends=[digest fs tibble xml2]; }; - rfars = derive2 { name="rfars"; version="1.1.0"; sha256="06wxphwsb1cy5i36zsyi7mlibc9vsgyp36nx3xj1z451fgbc29l0"; depends=[data_table downloader dplyr haven janitor lubridate magrittr purrr readr rlang sas7bdat stringr tidyr tidyselect zoo]; }; + rfars = derive2 { name="rfars"; version="1.2.0"; sha256="1wk0gzg50hd7iq7l4c4rdzwvn0i6ikarp4pyqnv4ginvwlxyf591"; depends=[data_table downloader dplyr haven janitor lubridate magrittr purrr readr rlang sas7bdat stringr tidyr tidyselect zoo]; }; rfieldclimate = derive2 { name="rfieldclimate"; version="0.1.1"; sha256="0g22lkz8pygmgrj138y15ldcacr6im7gxq579wfrgjaxs3q8ymcp"; depends=[digest dplyr httr jsonlite lubridate magrittr purrr tidyr]; }; rfigshare = derive2 { name="rfigshare"; version="0.3.8"; sha256="10shwl1y9220m7ld5w9fjsjzy5yg8myrz9cz97ps9z2bw7bvka5j"; depends=[ggplot2 httpuv httr RJSONIO XML yaml]; }; rfinterval = derive2 { name="rfinterval"; version="1.0.0"; sha256="1z7v0sbql6g2h3fr1268nj79rbx1d33hjfaraxhbikrjgb8mbp0w"; depends=[MASS ranger]; }; @@ -16837,7 +17111,7 @@ in with self; { rfishnet2 = derive2 { name="rfishnet2"; version="0.2.0"; sha256="0g90h4353kp7szv3971kb4l5x3x08qx4f9ln85n5g3b3zdg77dkz"; depends=[dplyr ggplot2 pracma rworldmap sf]; }; rflashtext = derive2 { name="rflashtext"; version="1.0.0"; sha256="12iyd6r6dyjafbpxmd4kah0kqnc6kb4p1lbz2xgxg4v912swxcsm"; depends=[R6 Rcpp]; }; rflexscan = derive2 { name="rflexscan"; version="1.1.0"; sha256="0jlswyfdmi4c8jd2m56inid08injjjmmjy3m3hmqspm6arv9flq1"; depends=[igraph Rcpp sf]; }; - rflsgen = derive2 { name="rflsgen"; version="1.2.1"; sha256="0cfvbzc9a09738ygrq5jsjniblb8slfvmnscgk7jx0dprgcxj7yn"; depends=[checkmate jsonlite rJava terra]; }; + rflsgen = derive2 { name="rflsgen"; version="1.2.2"; sha256="168kb9346fkcv65y0fzm2l946hgmgcycivfl5nqpw26ggmflbz6f"; depends=[checkmate jsonlite rJava terra]; }; rfm = derive2 { name="rfm"; version="0.3.0"; sha256="0n0sbf9c3p0df0vdymyp6pbfvyf0nh90fxjxwkdg3l5hm8m26hkp"; depends=[dplyr ggplot2 magrittr RColorBrewer rlang scales treemapify xplorerr]; }; rfoaas = derive2 { name="rfoaas"; version="2.3.2"; sha256="03rz1cas0anmfpnax66nr3bsiqgkq02wbvslvqc0q9ayl6p02avh"; depends=[httr]; }; rfold = derive2 { name="rfold"; version="0.2.0"; sha256="1p83sj362ggwip6hvpbqahhlrh60fb42jqniybwv5f4x86vgrzd1"; depends=[cli fs glue here usethis]; }; @@ -16846,7 +17120,7 @@ in with self; { rfviz = derive2 { name="rfviz"; version="1.0.1"; sha256="1pxr9bsqg27vgbngj89hhjq0gyzgdlg69rz6kzvvd8gclg42wisv"; depends=[loon randomForest]; }; rgTest = derive2 { name="rgTest"; version="0.1"; sha256="02cdi05izgl7xkhp9zl01jm762x3dqjmzxjl3akjrid825x6c220"; depends=[ade4]; }; rgabriel = derive2 { name="rgabriel"; version="0.9"; sha256="1za8njmasl7kmmiqgxhr8k2p1kygkadkqgim9wgyjkcnzljg46kb"; depends=[]; }; - rgbif = derive2 { name="rgbif"; version="3.7.9"; sha256="1ni0pkxp2rmjbvxrn3r19hdig64f4jwrq8awd96x4grb8z45fw7d"; depends=[crul data_table ggplot2 jsonlite lazyeval magrittr oai R6 tibble whisker wk xml2]; }; + rgbif = derive2 { name="rgbif"; version="3.8.0"; sha256="1s1cdls4sv2ncxp8c9a2rah9yw95rlvfskzcg2bx74a282bd0p4b"; depends=[crul data_table ggplot2 jsonlite lazyeval magrittr oai R6 tibble whisker wk xml2]; }; rgdax = derive2 { name="rgdax"; version="1.2.1"; sha256="01hpyyhb6jcw9w0q9h4ghgh4cbba27mfl9zdv4vv4ppakvl80czl"; depends=[digest httr jsonlite plyr RCurl]; }; rgee = derive2 { name="rgee"; version="1.1.7"; sha256="1v6xczz7n3gby7ckh323yr5jqvzsvpjy1qszqh9hk7a56m3y31mh"; depends=[cli crayon jsonlite leafem leaflet magrittr processx R6 reticulate rstudioapi]; }; rgeedim = derive2 { name="rgeedim"; version="0.2.7"; sha256="17vxxhkmafm6vlgb5b6lp2mq316gph84i9r58xvx6sya7ckyi8dh"; depends=[jsonlite reticulate]; }; @@ -16860,14 +17134,14 @@ in with self; { rgexf = derive2 { name="rgexf"; version="0.16.2"; sha256="00c2zka1n3k7p1l0mlchr063s6x58p9r3fb64d4wgl4rvsq55q3f"; depends=[igraph servr XML]; }; rgho = derive2 { name="rgho"; version="3.0.2"; sha256="1j46pkb8n2hn1isz5xgfagwn77cxs48wv3rs4qqvq2nq1r5bpa4x"; depends=[curl dplyr httr lifecycle magrittr ODataQuery rlang tibble tidyr]; }; rgl = derive2 { name="rgl"; version="1.3.1"; sha256="0jbda1b4lrkcpdld369687pm7isy69l5sx1wg2yrpvvzvmcppslz"; depends=[base64enc htmltools htmlwidgets jsonlite knitr magrittr mime R6]; }; - rgl_cry = derive2 { name="rgl.cry"; version="0.1.0"; sha256="0yj0gx0k5q6lhc5ifpdbn4pdqmzr38mjln8jqm20nhpd57iwqg2p"; depends=[cry rgl]; }; + rgl_cry = derive2 { name="rgl.cry"; version="0.1.1"; sha256="0zp7qq893cjs41rml64abdps4mddmsqafsc4mvqrg8lkir4awljw"; depends=[cry pracma rgl]; }; rgl2gltf = derive2 { name="rgl2gltf"; version="1.0.3"; sha256="0krn4dp8xf6z5363agz42v4dwhhxdrxpqzhmf9yd8xl2l3yj6pfp"; depends=[base64enc jsonlite R6 rgl]; }; rglobi = derive2 { name="rglobi"; version="0.3.4"; sha256="14jwl1cl20q7sgsiidd2sd2p2vjjfvqam0bijg9j8328g27cbi63"; depends=[curl RCurl readr]; }; - rglplus = derive2 { name="rglplus"; version="1.1"; sha256="1i9i62214yljaxplzk8qk9dbslj1shgddmdvpqj35nr45pavnnqm"; depends=[rgl]; }; + rglplus = derive2 { name="rglplus"; version="1.3"; sha256="1x2zbisgdvfz868c342lbnc2r3fc849ahsy8kk34qrnpzmawb5f5"; depends=[rgl]; }; rgm = derive2 { name="rgm"; version="1.0.4"; sha256="0d6149mg0mvnp64dnn3nh9bxqcal324pjipnbqsmfslhk8sw8bwb"; depends=[BDgraph ggplot2 huge MASS pROC Rcpp reshape2 truncnorm]; }; rgnoisefilt = derive2 { name="rgnoisefilt"; version="1.1.2"; sha256="0rdjbxws1bimpnwfv46yycafvwjc2lcqgdf993f5mm2sg2fxv2da"; depends=[arules class e1071 entropy FNN gbm ggplot2 infotheo kknn modelr nnet randomForest rpart]; }; rgnparser = derive2 { name="rgnparser"; version="0.3.0"; sha256="0fjkbgrglybvjj2cqswkf8wjxqad91h6xv1pf9ly5iggc2z830v1"; depends=[jsonlite lifecycle readr sys tibble]; }; - rgoogleads = derive2 { name="rgoogleads"; version="0.10.0"; sha256="1v2g580js7avyqd02d9vyawj04x3yil6iw3w865h5901k40q817d"; depends=[cachem cli dplyr gargle httr jsonlite memoise pbapply purrr rappdirs rlang rlist rvest snakecase stringr tidyr withr]; }; + rgoogleads = derive2 { name="rgoogleads"; version="0.11.0"; sha256="1bw12cwxwk6rvhym6vaz9va2pvg54n9najx611dd10p5cvqgp0gs"; depends=[cachem cli dplyr gargle httr jsonlite lifecycle memoise pbapply purrr rappdirs rlang rlist rvest snakecase stringr tidyr withr]; }; rgoogleclassroom = derive2 { name="rgoogleclassroom"; version="0.9.1"; sha256="0s4s5ipvnbwrf76ihzcjqkf3l1j008gn0ncl2a4znp9ka432gk49"; depends=[assertthat attempt curl dplyr httr jsonlite knitr lubridate magrittr openssl ottrpal purrr R6 stringr]; }; rgoogleslides = derive2 { name="rgoogleslides"; version="0.3.2"; sha256="0h9gws1vcf0zdd21d8b65c2yz9kxppp3218h5lhd5iz879ajwa2i"; depends=[assertthat httr jsonlite R6]; }; rgplates = derive2 { name="rgplates"; version="0.4.0"; sha256="1yrqx0m9va1izszpz6s2vd3hx5db9p4hsbj3i1ismd5pryb4xk1j"; depends=[sf]; }; @@ -16875,25 +17149,26 @@ in with self; { rgrass = derive2 { name="rgrass"; version="0.4-2"; sha256="0b95b52yrpagjcfi8wxsg8cf5zfhrdlxzvppnb73815cj39wdfns"; depends=[xml2]; }; rgsp = derive2 { name="rgsp"; version="0.2.0"; sha256="1fk0k479srfr0f4a5abyzcrzwy9hr1v5xf0jgs36fbim9bh7njlc"; depends=[dplyr magrittr tibble]; }; rgtmx = derive2 { name="rgtmx"; version="0.1.4"; sha256="0zqab6zhfkc302nsa13nbi5bc45xwrhsrn42g2jnjw2xpnfk3ynz"; depends=[httr jsonlite]; }; - rgugik = derive2 { name="rgugik"; version="0.4.0"; sha256="0lkjnwg679fn6ii86h3w6n9b9aylp7m5bipji46bi92v2s2sssm2"; depends=[jsonlite sf]; }; + rgugik = derive2 { name="rgugik"; version="0.4.1"; sha256="0a3bk0p7p4ay9nx3vz22fnlvb928isgab5ll50s1mffbzx32iwqd"; depends=[jsonlite sf]; }; rgw = derive2 { name="rgw"; version="0.3.0"; sha256="0hzkajmvqkmv6c238rdgyc6g16h96d5a0lnajnn5m87j0gwsl6wa"; depends=[]; }; rhandsontable = derive2 { name="rhandsontable"; version="0.3.8"; sha256="07fj6npq65pq836vdwblkhprdaq4i4f13cwdmm9gmxrnk72xj7lh"; depends=[htmlwidgets jsonlite magrittr]; }; rhcoclust = derive2 { name="rhcoclust"; version="2.0.0"; sha256="0ck5slv3y08vcxkdxhw5j6n3jjsg4jj6r8hkb0yhkq2k59b18rg0"; depends=[fields igraph]; }; rheroicons = derive2 { name="rheroicons"; version="1.0.0"; sha256="02yknpdgfjjkkk9456pxfl9qhaphwrhbxw7fh04ki9a1rgalk0xw"; depends=[htmltools shiny stringr]; }; rhierbaps = derive2 { name="rhierbaps"; version="1.1.4"; sha256="0717h3j9pamz0hkwcfadivhfh9n2bd9l55kvll1ipc4dz85cp324"; depends=[ape ggplot2 matrixStats patchwork purrr]; }; - rhino = derive2 { name="rhino"; version="1.7.0"; sha256="1max1wlwv5fa4gl2h2zpd8ia0y7ss122jsm5vb9mih204p2ydcrz"; depends=[box cli config fs glue lintr logger purrr renv rstudioapi sass shiny styler testthat withr xml2 yaml]; }; + rhino = derive2 { name="rhino"; version="1.8.0"; sha256="1vsf5bvbqdrvsd21z1ps1hxxmpkf39x2xk5wk45695pg9zq8dy19"; depends=[box box_linters cli config fs glue lintr logger purrr renv rstudioapi sass shiny styler testthat withr yaml]; }; rhmc = derive2 { name="rhmc"; version="1.0.0"; sha256="1m79f1hx404y0k8lk3n6jnzhr6wwrk83xiym68sq1zvj0wjqiqmw"; depends=[]; }; rhnerm = derive2 { name="rhnerm"; version="1.1"; sha256="1fkh2pr4kzvqvagdyjlyab7p591s913104gyq05q170gmvlpmiww"; depends=[]; }; rhoR = derive2 { name="rhoR"; version="1.3.0.3"; sha256="0l387m6l2x3djn1liag4m49835m2mny006sjzqbravb1famrvawi"; depends=[Rcpp RcppArmadillo]; }; rhoneycomb = derive2 { name="rhoneycomb"; version="2.3.4"; sha256="1vh6y4hfpcbpm448hd083ln197fc7h6pg6bngvmla2aj9vp6rlmx"; depends=[]; }; - rhosa = derive2 { name="rhosa"; version="0.2.0"; sha256="00j4s3x05cyz0nr63v9ajj9k13nyml0s3m3hg1zm7hfyzr9gzdjq"; depends=[]; }; + rhosa = derive2 { name="rhosa"; version="0.3.0"; sha256="170k380vmp2h78vysxzvarr7ar0fcr9xd6rh8bj6f9pfxzkyyjmg"; depends=[]; }; rhosp = derive2 { name="rhosp"; version="1.10"; sha256="1k0rb4fchjlzinky6ysdvyk0xjsx5986aqwn3yc6s7m3v7y9wb9m"; depends=[]; }; - rhub = derive2 { name="rhub"; version="1.1.2"; sha256="12m751d8qyl7fhrg8660wman2msz3qjkrw0h49pxf7lyzfamn9wm"; depends=[assertthat callr cli crayon desc digest httr jsonlite parsedate pillar prettyunits processx R6 rappdirs rcmdcheck rematch tibble uuid whoami withr]; }; + rhub = derive2 { name="rhub"; version="2.0.0"; sha256="05q1jv7c2l09ssb72d17hhcisvzqmcd3d1njc1j6w8lhvc5kqs47"; depends=[callr cli curl desc gert gitcreds glue jsonlite pkgbuild processx R6 rappdirs rematch rprojroot whoami]; }; rhymer = derive2 { name="rhymer"; version="1.2.0"; sha256="0pjazv3daysg14ikilq0gly1d9fl1rfs3j92wg67wyy8hwqd74zx"; depends=[httr jsonlite]; }; rhype = derive2 { name="rhype"; version="0.3.0"; sha256="16nzycgvp8xrjjly7j96kvy816xna5i5rdnd27gmyjmpf0dvp429"; depends=[Matrix R6 RSpectra]; }; ri2 = derive2 { name="ri2"; version="0.4.0"; sha256="0k85rmjl0inida4wx6d612vp35sr4cg2zsmrby8rl7p4gwrbix5v"; depends=[estimatr generics ggplot2 pbapply randomizr]; }; - rib = derive2 { name="rib"; version="0.19.3"; sha256="1ysrkgk6rjg2q4dwz3rbbvkdd4nv2c20c1b8sa8rj98mjvs0ch2m"; depends=[R6]; }; - ribd = derive2 { name="ribd"; version="1.6.1"; sha256="1pzkbazm5mcr05ib2x0cs8aa7jk96k9nhkish96awjd2ihq6c019"; depends=[glue kinship2 pedtools slam]; }; + riAFTBART = derive2 { name="riAFTBART"; version="0.3.3"; sha256="0wcnw955zqmr7qqwwb3d37km6nkhwvhvaissv97fxkq9rwyz67ky"; depends=[BART cowplot dbarts doParallel dplyr foreach ggplot2 magrittr MCMCpack msm nnet randomForest RRF stringr survival tidyr twang]; }; + rib = derive2 { name="rib"; version="0.20.0"; sha256="03nj88x8zbspadprqhzcs8781cmp5bkl4gdrncbl4lzcjdi4mn0h"; depends=[R6]; }; + ribd = derive2 { name="ribd"; version="1.7.0"; sha256="1g378kpi6660176d64r84kw8zk662sai83r33ayjxbfn6w8s48xy"; depends=[glue kinship2 pedtools slam]; }; ricegeneann = derive2 { name="ricegeneann"; version="1.0.2"; sha256="0wxqp4pfdhvq4mwzjrqi3m9jiayk5bp1ha222mpm4qz1pl41cy9w"; depends=[riceidconverter]; }; riceidconverter = derive2 { name="riceidconverter"; version="1.1.1"; sha256="143f76v3k2q9ddcxf2nzvd04pjgy7p120ln0zkmxpal20c81dwq6"; depends=[dplyr]; }; riceware = derive2 { name="riceware"; version="0.4"; sha256="0pky0bwf10qcdgg9fgysafr35xbmnr9q0jbh56fawj99nbyj3m70"; depends=[random]; }; @@ -16904,8 +17179,9 @@ in with self; { ridgregextra = derive2 { name="ridgregextra"; version="0.1.1"; sha256="1xv6icprb2i5cy80i8aqv72yxpg4ybi6hc5y4hvbhvs6m22ydkiq"; depends=[isdals mctest plotly]; }; ridigbio = derive2 { name="ridigbio"; version="0.3.8"; sha256="1202w1gf77xnbgiwjyajjf2bvi879q4nlfnq6fwd03bzmypdn675"; depends=[httr jsonlite plyr]; }; ridittools = derive2 { name="ridittools"; version="0.1"; sha256="1m9xbwxb277l4cd85qxmpw66gyavpwamgwr8kyf8vqarzfbwiilr"; depends=[]; }; - riem = derive2 { name="riem"; version="0.3.0"; sha256="0a0nl1857x7qw8y8n5fq9hfhh1s25cihd2532zxfyvy14icwf72i"; depends=[httr2 jsonlite lubridate magrittr purrr rlang tibble]; }; + riem = derive2 { name="riem"; version="0.3.1"; sha256="04j9g0g3wgwm0qikad35vi0jb55n7bna12gq5jgy1kkc26l1srgw"; depends=[cli httr2 jsonlite lubridate magrittr purrr rlang tibble]; }; rifle = derive2 { name="rifle"; version="1.0"; sha256="1r0cfj3vzndgiarl9sb38zmpnpm4p8v9l5cm9c1m6g2q9kvpgpbs"; depends=[MASS]; }; + rifreg = derive2 { name="rifreg"; version="0.1.0"; sha256="053hlvx3yibiadzwjsv55qvysc0bkznzqk61rjwb23lyxvjbb3rq"; depends=[Formula ggplot2 Hmisc pbapply sandwich]; }; rigr = derive2 { name="rigr"; version="1.0.4"; sha256="0x0f8a33zqid6gld2mc0k8jsmbfz2d58myr8zn7i5cr6w02lpi35"; depends=[sandwich survival]; }; riingo = derive2 { name="riingo"; version="0.3.1"; sha256="1ww9ps0v1yga9dwb68crbhf56xw2svl7az95ifrdrswyyikj02vj"; depends=[crayon glue httr jsonlite purrr rlang tibble vctrs]; }; rim = derive2 { name="rim"; version="0.6.4"; sha256="0i4xb56kj4w9hd5i4g42y1ml6yy3p94lsmfm5mlkwixg8f25hhwj"; depends=[GlobalOptions knitr R6 Rcpp]; }; @@ -16917,9 +17193,10 @@ in with self; { rintcal = derive2 { name="rintcal"; version="0.6.4"; sha256="0gc6wzmhvbmhvcxl17bhdzcms5zqvc7bl2s2jbhcqr010zignybs"; depends=[data_table jsonlite]; }; rintimg = derive2 { name="rintimg"; version="0.1.0"; sha256="0jzs4mdwpzbpl0wchyhl3cpywk25ayaxalr12p4cnjl7vnmdm7dp"; depends=[glue htmltools]; }; rintrojs = derive2 { name="rintrojs"; version="0.3.4"; sha256="12944h3h6131l916bsz6vmccq8pvq831b52s3wb1hpwygqfj0a6l"; depends=[jsonlite shiny]; }; - rio = derive2 { name="rio"; version="1.0.1"; sha256="1vkvajlmp8kgmkadamy0xm885whfkwacq2jxcrshz1w8amy16k3m"; depends=[curl data_table foreign haven lifecycle R_utils readxl stringi tibble writexl]; }; + rio = derive2 { name="rio"; version="1.1.1"; sha256="0llvdd4vdxpvjvbya3b6kh04h0k48ijy4dkjl77ynvhlh9wyzw9y"; depends=[curl data_table foreign haven lifecycle R_utils readr readxl tibble writexl]; }; rioja = derive2 { name="rioja"; version="1.0-6"; sha256="029p70d3ih5prnjxrk60rnqnfky1xkajmq6ldf6sz8bq6idkn2d3"; depends=[mgcv vegan]; }; - ripc = derive2 { name="ripc"; version="0.2.1"; sha256="0ilydrfzhbfbp677qhcbrzn99mjf69w3jy39i8j3igpjbm0qfgix"; depends=[countrycode dplyr httr lifecycle lubridate magrittr purrr rlang stringr tidyr]; }; + rioplot = derive2 { name="rioplot"; version="1.1.1"; sha256="02la6a8rbj7ksjb4yzywp96hlblkv2vww7s5qizs78r5r5z13hwb"; depends=[ggplot2]; }; + ripc = derive2 { name="ripc"; version="0.3.0"; sha256="1a89qg6q6ysvaggf50qdrpcfcjk6zrv133g93p9pq35d2ldava55"; depends=[countrycode dplyr httr jsonlite lifecycle lubridate purrr readr rlang sf stringr tidyr]; }; ripserr = derive2 { name="ripserr"; version="0.1.1"; sha256="1rwsd1yi5vrzdscjgr27fw0d1a6nkc8g2w5hqgqijiwm25h4wl17"; depends=[Rcpp]; }; rirods = derive2 { name="rirods"; version="0.2.0"; sha256="1ca82i240cy74ig8fb71lcbabw3pbg0w5df8nc8c2yhqymgclxdc"; depends=[curl httr2 jsonlite rappdirs testthat withr]; }; rise = derive2 { name="rise"; version="1.0.4"; sha256="12r7mbaxp9pjypbpjxlsbqg7spw80gjgm2w0lsvgvclffc50a6ni"; depends=[dplyr ggplot2]; }; @@ -16931,7 +17208,7 @@ in with self; { riskclustr = derive2 { name="riskclustr"; version="0.4.1"; sha256="0c5gc4kllhf8i5x0dw0lkdkp40r6smv5hkiq57pih9ahz18did9i"; depends=[Matrix mlogit stringr]; }; riskmetric = derive2 { name="riskmetric"; version="0.2.4"; sha256="00zc0jnnkx8z4mgr4h7w1xh8id4bai5l8jvh10xhylsvc1gy4ysg"; depends=[backports BiocManager covr cranlogs curl devtools httr memoise pillar pkgload tibble urltools vctrs xml2]; }; risks = derive2 { name="risks"; version="0.4.2"; sha256="1f28v9yqcbg2qp0xilggm61phyqcwfn9rw0vlg09wv12g3ii05xp"; depends=[bcaboot boot broom dplyr purrr rlang sandwich tibble tidyr]; }; - riskscores = derive2 { name="riskscores"; version="1.0.2"; sha256="068g0dq3cjnfrb09bkcivbm9n62lb59bvmkbh468hnzayp4lli9w"; depends=[dplyr foreach ggplot2 magrittr]; }; + riskscores = derive2 { name="riskscores"; version="1.1.1"; sha256="0m2f4mk8zghnqvry949lqajv9q9l7p663qqx7j62mnax41y9ylx2"; depends=[dplyr foreach ggplot2 magrittr]; }; risksetROC = derive2 { name="risksetROC"; version="1.0.4.1"; sha256="11x6qga8m8xgl4hlnjsznd4sicfxc5pbi4gv27s0gnjml0f3irhg"; depends=[MASS survival]; }; riskyr = derive2 { name="riskyr"; version="0.4.0"; sha256="1ki3r46d73ws0gnm93llmkv42yfm0mfwvxxafnrhsdcj5kinl4ir"; depends=[]; }; ritis = derive2 { name="ritis"; version="1.0.0"; sha256="0dk1hpj2cahlw4lcdjnnllpnvdimaml57sfcw07iz2s0f8c24yrj"; depends=[crul data_table jsonlite solrium tibble]; }; @@ -16939,25 +17216,26 @@ in with self; { riverconn = derive2 { name="riverconn"; version="0.3.31"; sha256="094w6mkndpvwldmlak2z1dm7n093n3s81mnz4x9dac6mrdl63s19"; depends=[dodgr doParallel dplyr foreach igraph magrittr reshape2 rlang tidyr tidyselect]; }; riverdist = derive2 { name="riverdist"; version="0.16.3"; sha256="0ai29wb3ah27v58xqzhip3kaj7zhkzrsi4300n9kf7yvb2y018gp"; depends=[sf]; }; rivernet = derive2 { name="rivernet"; version="1.2.3"; sha256="197y3sv75a7wg1i7a7m5yxpsv6j5hyv0fs5anqkxbz45qhhf163z"; depends=[]; }; - rivnet = derive2 { name="rivnet"; version="0.4.0"; sha256="0i55yb7v2vl8lks5ax3v8mkwy3hspdh1xsy6m2hyqf1azh10p324"; depends=[curl elevatr fields OCNet raster Rcpp sf spam terra traudem]; }; + rivnet = derive2 { name="rivnet"; version="0.4.2"; sha256="1mzhxf3xirblbrz13w29970ja9ldhsfjk2pszj86z39dyby17dj0"; depends=[curl elevatr fields OCNet raster Rcpp sf spam terra traudem]; }; rivr = derive2 { name="rivr"; version="1.2-3"; sha256="10k4cqrlzcy5g0yqbkrzxfz0dwsnf8kgmfq011lj13kxpb38bpvy"; depends=[Rcpp]; }; rjade = derive2 { name="rjade"; version="0.1.1"; sha256="0wv1vpy8ql1r9ya5mfqxdj7jv5wk029g8hjjp0xqp8dm507vj11x"; depends=[V8]; }; rjags = derive2 { name="rjags"; version="4-15"; sha256="188qxyanny4yb1cq8hrz0y7pjafgvj0vhly0gaw271dam8glrk9m"; depends=[coda]; }; rjdmarkdown = derive2 { name="rjdmarkdown"; version="0.2.2"; sha256="1g1r11zi8agifndlnayrh1vbz570s2x535kn89yz1llrk378v9c5"; depends=[kableExtra knitr magrittr RJDemetra]; }; - rjdqa = derive2 { name="rjdqa"; version="0.1.4"; sha256="0g2qb7mkalcwnlrzb5943dg9pazlppn9xjmpp6a2jzgq9dzim753"; depends=[ggdemetra plotrix RJDemetra]; }; + rjdqa = derive2 { name="rjdqa"; version="0.1.5"; sha256="0m3r5ficsj1hlp72imb1v2fbl2kvh9gni2rkff66wag805v0sjxp"; depends=[ggdemetra plotrix RJDemetra]; }; + rjdworkspace = derive2 { name="rjdworkspace"; version="1.1.7"; sha256="19knl5qynwa3f2f77fkxv0fg13hqcdrkh5rwrpzd3gv71iifzc8r"; depends=[rJava RJDemetra XML]; }; rje = derive2 { name="rje"; version="1.12.1"; sha256="07a1wbn5ps9ygfi25fffgmrzw90izj4yk8gxb47r85x6lvqv1p0h"; depends=[]; }; rjmcmc = derive2 { name="rjmcmc"; version="0.4.5"; sha256="14rzvp6z5avlcnmlmvb6w4gvlh6v4ncbcai3v4c4svnjv555vz45"; depends=[coda madness mvtnorm]; }; rjqpd = derive2 { name="rjqpd"; version="0.2.3"; sha256="14vbp9s2859h4n3m3bq830nvxvk58h3mvvdnb27qsalbcfwd94v5"; depends=[]; }; rjson = derive2 { name="rjson"; version="0.2.21"; sha256="1qm27r1w677zg31gsiln60hcciszbymkw78cnaq7s36cbk9mcawq"; depends=[]; }; - rjsoncons = derive2 { name="rjsoncons"; version="1.2.0"; sha256="17mhik2hkiwqv90prylva0aajigx0xp9r76yz67v5ijbhlkpkccn"; depends=[cpp11]; }; + rjsoncons = derive2 { name="rjsoncons"; version="1.3.0"; sha256="09dxvw64kri4dx5hn399r0w50zvi13sk9fzyijy45a7m5366wq0w"; depends=[cli cpp11]; }; rjstat = derive2 { name="rjstat"; version="0.4.3"; sha256="1x49x3f00dv0fxnyl0kj03q6z654mv0dhzhh8cbn1r4pg5pj63ns"; depends=[checkmate jsonlite]; }; - rjtools = derive2 { name="rjtools"; version="1.0.12"; sha256="1sdyxnj4qf693cvmxjgbykamn2b69pznsgr5qsjia20pq72yzijk"; depends=[BiocManager bookdown callr cli distill fs glue here hunspell purrr rlang rmarkdown stringr tinytex whisker xfun yaml yesno]; }; + rjtools = derive2 { name="rjtools"; version="1.0.13"; sha256="14asxv74bdddrc0k8pl8dylmsp6qgii55hmqwg6nci6n35a6qd34"; depends=[BiocManager bookdown callr cli distill fs glue here hunspell purrr rlang rmarkdown stringr tinytex whisker xfun yaml yesno]; }; rjwsacruncher = derive2 { name="rjwsacruncher"; version="0.2.0"; sha256="14yg801mxj0kvg3aswxvhbncs6mh63ddk0mnfawm39ycgwc19g3d"; depends=[XML]; }; rkafkajars = derive2 { name="rkafkajars"; version="1.2"; sha256="1z1rn02ymzaq3v3pz206wlm78y591xa9780fwf77i4vfq2k9pxrz"; depends=[rJava RUnit]; }; rkt = derive2 { name="rkt"; version="1.7"; sha256="1hzbrfpp10xfvmrl0wqqf21d886mar8jvipzaiki76ms2a1yp78j"; depends=[]; }; rkvo = derive2 { name="rkvo"; version="0.1"; sha256="0ci8jqf9nc8hb063nckxdnp0nlyr4ghby356lxm00anw44jlmw8v"; depends=[Rcpp]; }; rlandfire = derive2 { name="rlandfire"; version="1.0.0"; sha256="18l5fjx3aw89wybhjbw3lyk8a0619919s6d4mbh293vbyfgng0a8"; depends=[httr sf]; }; - rlang = derive2 { name="rlang"; version="1.1.3"; sha256="02mz53g8lk26yi0js6qq57ijhl1mw7xm82vwbwzbvi62bm5l58r4"; depends=[]; }; + rlang = derive2 { name="rlang"; version="1.1.4"; sha256="1qd6chyciwhj6f6w56d3pcy4q8qdvqkyn2s709qjiwwba0klbmzj"; depends=[]; }; rlas = derive2 { name="rlas"; version="1.7.0"; sha256="0abbzh17cyiamgdln55b23nsywr3p60bk7n3wv70asg945pqnxhi"; depends=[BH data_table Rcpp]; }; rlc = derive2 { name="rlc"; version="0.5.0"; sha256="1n13hlspsb118md6nh1w09gww4b58kxqf3lcp8g3zv14hr2dgwkr"; depends=[hwriter jrc jsonlite plyr R6 stringr]; }; rlcv = derive2 { name="rlcv"; version="1.0.0"; sha256="00fz949jabbzci22yjlhc7bh4j2h44llplcrgsrbi3h97lrg7hc0"; depends=[statmod]; }; @@ -16968,10 +17246,10 @@ in with self; { rless = derive2 { name="rless"; version="0.1.1"; sha256="0ham8kf2hbswrcnc5i5b3svywdwq3kwp9n66n4k9sllahl4x9jdn"; depends=[V8]; }; rlfsm = derive2 { name="rlfsm"; version="1.1.2"; sha256="0qlyz4v1966x73hx3lwv1kgk18304xfp9qm66cb9a6g8bk54xp8z"; depends=[doParallel foreach ggplot2 plyr Rcpp Rdpack reshape2 stabledist]; }; rlibkriging = derive2 { name="rlibkriging"; version="0.8-0.1"; sha256="07k0vb21bk83ygvgks4fspfik5zjwlqilwjy2rjzimhikx87srgk"; depends=[DiceKriging Rcpp RcppArmadillo]; }; - rliger = derive2 { name="rliger"; version="2.0.0"; sha256="0bxbggzv795qz4vmiricyprbqxz81xkmbpjnh1jiv8g52daji2d1"; depends=[circlize cli ComplexHeatmap cowplot dplyr ggplot2 hdf5r leidenAlg lifecycle magrittr Matrix RANN RColorBrewer Rcpp RcppArmadillo RcppProgress rlang Rtsne S4Vectors scales uwot viridis]; }; + rliger = derive2 { name="rliger"; version="2.0.1"; sha256="1903jylhv6pb87p4zywx8b5aqvf3c96lpx479r1c58lbc0i3f5p1"; depends=[circlize cli ComplexHeatmap cowplot dplyr ggplot2 hdf5r leidenAlg lifecycle magrittr Matrix RANN RColorBrewer Rcpp RcppArmadillo RcppProgress rlang Rtsne S4Vectors scales uwot viridis]; }; rlinkedinads = derive2 { name="rlinkedinads"; version="0.2.0"; sha256="1d35imrikv94ldsf0c3x5hilzrsdyisshbw7hby1d76ki40gcj03"; depends=[cli dplyr httr2 pbapply rappdirs rlang snakecase stringr tidyr urltools]; }; rlist = derive2 { name="rlist"; version="0.4.6.2"; sha256="15q99rhbbjq8zd976yjmfnny45dd5fg2p2dv1sljg2kwi66nbppb"; depends=[data_table jsonlite XML yaml]; }; - rlistings = derive2 { name="rlistings"; version="0.2.7"; sha256="0fbcj4m40gpavf631mya9yjyvzln0nv2v50s35m17y2kzmqyr25k"; depends=[checkmate formatters tibble]; }; + rlistings = derive2 { name="rlistings"; version="0.2.8"; sha256="1x0i2gis01ik9r0fy2znzlg0chgcjablk74xncsj7cgpgvdzfwmi"; depends=[checkmate formatters tibble]; }; rllama = derive2 { name="rllama"; version="0.4.4"; sha256="0waxh1di0ga9ya40n3gs9r12vwsb2nq9hd38nqcasy98y2x9p5b7"; depends=[data_table httr]; }; rlmDataDriven = derive2 { name="rlmDataDriven"; version="0.4.0"; sha256="1fhh2siafpqmvpxi2piccxvvn5n38s5d6as6iyn43rgpsslswc8g"; depends=[MASS tseries]; }; rlme = derive2 { name="rlme"; version="0.5"; sha256="0p26mw4g12l279lh80vqcjs3pvjr759ap2m622490k1i2ralxzif"; depends=[magic MASS mgcv nlme quantreg Rcpp robustbase stringr]; }; @@ -16984,7 +17262,7 @@ in with self; { rmapzen = derive2 { name="rmapzen"; version="0.5.1"; sha256="17nphlsck1fjkhfjbwdxzyxxn23z626wy49gpkf2jvan4lg7bb84"; depends=[assertthat digest dplyr geojsonio httr ISOcodes jsonlite purrr sf tibble tidyr]; }; rmarchingcubes = derive2 { name="rmarchingcubes"; version="0.1.3"; sha256="0cdmy728irmbd40xsc2k4r2g8am7s72ks7cw465fa92ml2xa6iq8"; depends=[Rcpp RcppArmadillo]; }; rmargint = derive2 { name="rmargint"; version="2.0.3"; sha256="1z76wz067jnd8zg343gkmn4ac4zyzxyafpndkhdrrh5h33y2whjs"; depends=[]; }; - rmarkdown = derive2 { name="rmarkdown"; version="2.26"; sha256="1q6z2j1y6pjdz4nzw44srv9j62irnxqhkvrsi46ma7xrzq6ig34g"; depends=[bslib evaluate fontawesome htmltools jquerylib jsonlite knitr tinytex xfun yaml]; }; + rmarkdown = derive2 { name="rmarkdown"; version="2.27"; sha256="17rba2k1n945i56am345v9zfgdwm4rjmhcwdm7z8g1agmczcpsb1"; depends=[bslib evaluate fontawesome htmltools jquerylib jsonlite knitr tinytex xfun yaml]; }; rmass2 = derive2 { name="rmass2"; version="0.0.0.2"; sha256="0bbjqna65ldxv3wjidzv89fnsxm939scfsiba4pi54saxa7d9vqc"; depends=[]; }; rmatio = derive2 { name="rmatio"; version="0.19.0"; sha256="0640h71vbhasbankasxi24069g1la8b69vhz82ds0j52pf7kn2rb"; depends=[Matrix]; }; rmcfs = derive2 { name="rmcfs"; version="1.3.5"; sha256="0rbq2b9fw1x44v7ifxp8qgp4yciinw2sw9mqp4ms5jsxznpi2pi6"; depends=[data_table dplyr ggplot2 gridExtra igraph reshape2 rJava stringi yaml]; }; @@ -16993,6 +17271,7 @@ in with self; { rmda = derive2 { name="rmda"; version="1.6"; sha256="1m7j79jwii9la47w34ka3yl1n7nql8pfn32if0aycn4yw5sy8dmc"; depends=[caret MASS pander reshape]; }; rmdfiltr = derive2 { name="rmdfiltr"; version="0.1.3"; sha256="0llnn4pdfznidalm4f7fpyxbhzsqv1096fkbsl1pgf4f7ll6w7a7"; depends=[assertthat rmarkdown]; }; rmdformats = derive2 { name="rmdformats"; version="1.0.4"; sha256="00iccwxlks1y4v6m3abzkb0hcpk4cgagigzgy98xaja846lc8acz"; depends=[bookdown htmltools knitr rmarkdown]; }; + rmdl = derive2 { name="rmdl"; version="0.1.0"; sha256="10kx3bwwb5v2k37mn1wwqrbqj6nhgz649l4fzg12l8g6mpk5m1w1"; depends=[broom dplyr generics janitor pillar purrr rlang tibble tidyr vctrs]; }; rmdpartials = derive2 { name="rmdpartials"; version="0.5.8"; sha256="15dw0pk1hdif839k60swna4li04inf7fzsiq9bxbw2wk5pdkqirn"; depends=[digest knitr rlang]; }; rmdplugr = derive2 { name="rmdplugr"; version="0.4.1"; sha256="16wmrya8wdipqcrh34k4v4iq05aqd0jwf7rg6w1wsvx2i9211xg6"; depends=[bookdown rmarkdown]; }; rmdwc = derive2 { name="rmdwc"; version="0.3.0"; sha256="0s7k54ggf0zdkkjg8k5jz2kfjpw99i59k82xqgvj7qaxvakm7vss"; depends=[knitr rstudioapi]; }; @@ -17006,22 +17285,20 @@ in with self; { rminizinc = derive2 { name="rminizinc"; version="0.0.8"; sha256="0yyg8ikdlksxlsc8ms4gb8dvpdjk26np6cpm5a7rjp748x8is6qx"; depends=[checkmate R6 Rcpp rjson rlang rlist]; }; rminqa = derive2 { name="rminqa"; version="0.2.2"; sha256="1wq4cz9m8xqzii64rmdg42fv8khs1ybw3bax4s44aapcg56vj1i3"; depends=[Rcpp]; }; rmio = derive2 { name="rmio"; version="0.4.0"; sha256="1gkd8nkqyfpkp6nvqb7c698difak5ymih3vy6njzqd3gwdp09mhy"; depends=[bigassertr ff]; }; - rmonad = derive2 { name="rmonad"; version="0.7.0"; sha256="1vjx8kk57xk7c2a05c6kn75n17842ya7j41hqj3wmgq8yvaxrngx"; depends=[digest glue igraph magrittr pryr]; }; rmoo = derive2 { name="rmoo"; version="0.2.0"; sha256="180dz1b92iswfflbciss13qn730f3nx4km194wn7vci9xghsw1mf"; depends=[GA ggplot2 plotly]; }; rmp = derive2 { name="rmp"; version="2.2"; sha256="1993195mdaa0dp7hf4d1bmfxjzx061r71ccmpqdqcr8b54ps8lxw"; depends=[]; }; rmpw = derive2 { name="rmpw"; version="0.0.5"; sha256="150wvnzhwvi8vv76glrbqns1r09cx42fxjrpfvvkdjd5vsbhmibv"; depends=[gtools MASS]; }; - rms = derive2 { name="rms"; version="6.8-0"; sha256="1cd6m6i2ild2f2x9rkyd2aqb33q3xy0596bs3dnvr2mnh5fcar5d"; depends=[cluster colorspace digest ggplot2 Hmisc htmlTable htmltools knitr MASS multcomp nlme polspline quantreg rpart SparseM survival]; }; + rms = derive2 { name="rms"; version="6.8-1"; sha256="0sjr4lwvh05ji8s6jk2f4imnyzsaw8f1iqds8b1661s395bm8f4x"; depends=[cluster colorspace digest ggplot2 Hmisc htmlTable htmltools knitr MASS multcomp nlme polspline quantreg rpart SparseM survival]; }; rmsb = derive2 { name="rmsb"; version="1.1-0"; sha256="1pwx9y1jppy7fvm7wr5gnxmjrcfzc1x9n5p2ybc5xisz1ymb2fdn"; depends=[BH cluster digest ggplot2 Hmisc knitr loo MASS Rcpp RcppEigen RcppParallel rms rstan StanHeaders survival]; }; rmsfact = derive2 { name="rmsfact"; version="0.0.3"; sha256="05s23rfs9prr2ia3h4h9y614xhv91lbgppgf3mrrssxkwz220kd5"; depends=[]; }; rmsfuns = derive2 { name="rmsfuns"; version="1.0.0.1"; sha256="18bpj7xh3kc7pl6ivi3cripam26bsaf9r9099cjf22qndvy18hb6"; depends=[dplyr magrittr PerformanceAnalytics purrr readr tbl2xts xts zoo]; }; rmstcompsens = derive2 { name="rmstcompsens"; version="0.1.5"; sha256="1bjwf4s5mgl60i3psdzga0nmngnx2a90j2kpf6zysd2939rirv1n"; depends=[dplyr survival]; }; rmt = derive2 { name="rmt"; version="1.0"; sha256="165cqnwqr0dx7b8dgq7xlfk4j55p9l6dr5b2rzyvfy5l23k4kckn"; depends=[]; }; - rmumps = derive2 { name="rmumps"; version="5.2.1-28"; sha256="1cq7zrq730lj1z5xirzk5fvvlvdq101ppg47n0z7c0v17rvs80n6"; depends=[Rcpp]; }; + rmumps = derive2 { name="rmumps"; version="5.2.1-30"; sha256="0mz6dmb16dd8pflyd29ikj0wjlfbp4ri3xvc3fgmh26v1mvvaic4"; depends=[Rcpp]; }; rmutil = derive2 { name="rmutil"; version="1.1.10"; sha256="1yd5gkg4jg3rvqrfl8c5r07lcr37n1p9h1a7b6s45iswd77dg7w1"; depends=[]; }; - rmweather = derive2 { name="rmweather"; version="0.2.5"; sha256="0d76k80b7y3ay2njmanz45qvs5rj8mx076lln89bmi22fzwjarhj"; depends=[cli dplyr ggplot2 lubridate magrittr pdp purrr ranger stringr strucchange tibble tidyr viridis]; }; + rmweather = derive2 { name="rmweather"; version="0.2.6"; sha256="04xa3v5nkffz4b7r3a7il9qy0gmcpv741jvcjbn24z05ks6b17q3"; depends=[cli dplyr ggplot2 lubridate magrittr pdp purrr ranger stringr strucchange tibble tidyr viridis]; }; rmytarget = derive2 { name="rmytarget"; version="2.4.0"; sha256="1csl5b76r706gzvzhqgg4pdznbdl4i3b0srazwa7xdfc6zbrzljp"; depends=[dplyr httr lubridate purrr stringr tidyr]; }; - rmzqc = derive2 { name="rmzqc"; version="0.5.3"; sha256="0w740vx4f7sbj105ybv1rvfywlbpkfr7jdkvb6j09amzxr1bg9mg"; depends=[jsonlite jsonvalidate knitr ontologyIndex R6 R6P rmarkdown testthat]; }; - rnaCrosslinkOO = derive2 { name="rnaCrosslinkOO"; version="0.1.2"; sha256="146595ib0730ppx4dxfq7vmvxwgf1vs1w3vkhb8ylrc8id3lki4z"; depends=[ClassDiscovery doParallel foreach GenomicRanges ggplot2 ggrepel heatmap3 igraph IRanges MASS mixtools patchwork R4RNA RColorBrewer reshape2 RRNA S4Vectors seqinr tidyverse TopDom]; }; + rmzqc = derive2 { name="rmzqc"; version="0.5.4"; sha256="18nyw4amg8l8hby3fpfbafz730g0bsk4xp31fgfhlv2qzcbm07aw"; depends=[jsonlite jsonvalidate knitr ontologyIndex R6 R6P rmarkdown testthat]; }; rnames = derive2 { name="rnames"; version="1.0.1"; sha256="1213cg1br7sj0ky6bbrz1yc6gm8z38xfymvmrmlrx48j5bgxijx7"; depends=[]; }; rnassqs = derive2 { name="rnassqs"; version="0.6.1"; sha256="00daka4pgvmipqq3151jj35fsicpfc06mnim8mm5jx5cyqcvilf7"; depends=[httr jsonlite]; }; rnaturalearth = derive2 { name="rnaturalearth"; version="1.0.1"; sha256="1vfkn4bf77mr2n7dhmnl55ma4cvwy2nazhizmdqd98w2ydl13z3p"; depends=[httr jsonlite sf terra]; }; @@ -17035,7 +17312,7 @@ in with self; { rngtools = derive2 { name="rngtools"; version="1.5.2"; sha256="0kd7x214cqw7hzpmk1iqy1bn7j6x0ady0yz2hsdbclbq9k57d33z"; depends=[digest]; }; rnmamod = derive2 { name="rnmamod"; version="0.4.0"; sha256="0gwx4mwrirricbfwlsfq9ckbn34w8dwy3d0c532s50vcwpd3dm1g"; depends=[cluster dendextend fdrtool gemtc ggfittext ggplot2 ggpubr ggrepel heatmaply igraph knitr MASS mcmcplots R2jags reshape2 scales stringr writexl]; }; rnn = derive2 { name="rnn"; version="1.9.0"; sha256="12js613gmmcpniq5adbmb3anqsza67m0jxk69486jv3am2vyqi5p"; depends=[attention sigmoid]; }; - rnndescent = derive2 { name="rnndescent"; version="0.1.4"; sha256="1l9jjx73icciqfmhgc2p0c6b5rvwayxr78aw9dclvkdd87lpa0d0"; depends=[BH dqrng Matrix Rcpp sitmo]; }; + rnndescent = derive2 { name="rnndescent"; version="0.1.6"; sha256="1qgmy4sqs14zbv1mm6cany6xxk0hsaaiblsd4am85qj8gbjflm3f"; depends=[BH dqrng Matrix Rcpp sitmo]; }; rnpn = derive2 { name="rnpn"; version="1.2.8.0"; sha256="1svamnpfs76551cil1grch4nr6716j2qncdq7nqzp3ni5ia8522w"; depends=[curl data_table httr jsonlite magrittr plyr raster sp tibble XML]; }; rnr = derive2 { name="rnr"; version="0.2.1"; sha256="1z9bab3qmq8d79bcvjzldbxlah2w8mqp2ifd0cn1348dafwa0dhi"; depends=[assertthat purrr]; }; rnrfa = derive2 { name="rnrfa"; version="2.1.0.5"; sha256="1fqfcj4z05p6lxc9708pbal7fkwhdqrm4c2cx2jb76s09rc840ci"; depends=[curl ggmap ggplot2 httr jsonlite lubridate sf tibble zoo]; }; @@ -17045,11 +17322,8 @@ in with self; { robCompositions = derive2 { name="robCompositions"; version="2.4.1"; sha256="1kln6b95hjx3cyr9957ga7a5p6lnafn49q3pnb7vlvcw3p0zyhrf"; depends=[cluster cvTools data_table dplyr e1071 fda fpc GGally ggfortify ggplot2 kernlab magrittr MASS mclust pls Rcpp RcppEigen reshape2 robustbase robustHD rrcov tidyr VIM zCompositions]; }; robStepSplitReg = derive2 { name="robStepSplitReg"; version="1.1.0"; sha256="04azi5pk8jpq5lcssbax8jyf1lb0g8grmxpj56kaifzp764y66wn"; depends=[cellWise glmnet Rcpp RcppArmadillo]; }; robber = derive2 { name="robber"; version="0.2.4"; sha256="0db1cnf8f3f1i0mnp58cjq46cr0x6ffx6yzqnsdg6v7mwppdranb"; depends=[blockmodels ggplot2 GREMLINS igraph magrittr pammtools partitions purrr]; }; - robcbi = derive2 { name="robcbi"; version="1.1-4"; sha256="17i1isd9j14qbrrp3vqslwi1iig9m10hxyhzmjkpffcm2hsjddwc"; depends=[robeth]; }; robcor = derive2 { name="robcor"; version="0.1-6.1"; sha256="0gmhklk8nayhfl2zfp7mhsawryyn950gdh5lgg3vq1nkl12sc8y7"; depends=[]; }; - robcp = derive2 { name="robcp"; version="0.3.7"; sha256="0v5sb8q7knzs8qb4a8cmnm6n9x52xffcjhcgirlqmgm3ix1cl3mb"; depends=[Rcpp]; }; roben = derive2 { name="roben"; version="0.1.1"; sha256="0ak3l17wmw2z0rgaymqczv40z8kqaflzzjj0fbdfcnskdik2ynfq"; depends=[glmnet Rcpp RcppArmadillo]; }; - robeth = derive2 { name="robeth"; version="2.7-8"; sha256="0f5j9vc1d5nzisqa54ws3l7gn3ccnxg70ybl4fnawi531ih3rw60"; depends=[]; }; robfilter = derive2 { name="robfilter"; version="4.1.4"; sha256="10wrfd2ii99vscnajjrd48msn4ka75pn7h9yhgclilc9l9r0q1wn"; depends=[lattice MASS robustbase]; }; robflreg = derive2 { name="robflreg"; version="1.2"; sha256="1zhc2m8j4yzd5z54jx2lqks1bvvf4w0w3i7hr4hd46k8i3iy2cj2"; depends=[expm fda fda_usc fields goffda MASS mvtnorm pcaPP robustbase]; }; robin = derive2 { name="robin"; version="1.1.2"; sha256="1xzcq81a08mpj7nx11z8vq0g1w8jq2257glvm5jgzz9z4spcc0xz"; depends=[DescTools fdatest ggplot2 gridExtra igraph Matrix networkD3 qpdf spam]; }; @@ -17069,7 +17343,6 @@ in with self; { robslopes = derive2 { name="robslopes"; version="1.1.3"; sha256="0hhdpp03ybf71x6wz766glqlq4ywc4v65mj0ca3idv69p488mvb5"; depends=[Rcpp RcppArmadillo]; }; robsurvey = derive2 { name="robsurvey"; version="0.6"; sha256="0y1yw89ms0805iixv5xz9sq8zbdr7l89hb1nhwccdn7v62ydpxip"; depends=[KernSmooth survey]; }; robumeta = derive2 { name="robumeta"; version="2.1"; sha256="1lybq36p1n1z9p0iqiyzwmv5f07q1wlkqfgrnx9kjf6pwlp9mkyk"; depends=[]; }; - robusTest = derive2 { name="robusTest"; version="1.0.1"; sha256="0rgm0cl47c8ddhbl0da3jdrkxhgy3jqlabmi4fqkc80zcmaldmhi"; depends=[Rcpp]; }; robust = derive2 { name="robust"; version="0.7-4"; sha256="0qh816ha18v0n021cccjan1kplmyj0xyb7jmkmrnb6gxf8kma3b3"; depends=[fit_models lattice MASS robustbase rrcov]; }; robust2sls = derive2 { name="robust2sls"; version="0.2.2"; sha256="1q12lvb5kifcn6qjaw1zpzq8p59lw92x79jfj9ffgy3sswhznpq4"; depends=[exactci foreach ivreg MASS mathjaxr pracma]; }; robustBLME = derive2 { name="robustBLME"; version="0.1.3"; sha256="18wx116l1riy4wn4083kxl637mkyyi9wbwnmvhkgqw3vb36s4vxd"; depends=[doParallel foreach iterators lme4 mvtnorm numDeriv Rcpp RcppArmadillo]; }; @@ -17094,7 +17367,7 @@ in with self; { robvis = derive2 { name="robvis"; version="0.3.0"; sha256="0xzvx3230ydd082jmdlm70vyhjizknngfzhvcbqpdcm403klni5h"; depends=[ggplot2 scales tidyr]; }; rocNIT = derive2 { name="rocNIT"; version="1.0"; sha256="18vxyh1wcq6dv62xf2dyl4226cd00n4hlbaqnynl9j5gnrmmsvi1"; depends=[]; }; rocTree = derive2 { name="rocTree"; version="1.1.1"; sha256="1hd5v47gymffg5829swpd38xscm4vq75d46fibwkrr7jp9iy37ra"; depends=[data_tree DiagrammeR flexsurv ggplot2 MASS Rcpp RcppArmadillo survival]; }; - rocbc = derive2 { name="rocbc"; version="2.0.0"; sha256="18p7ydnaayia072dhpxlb184ib4rv0zmm8zymcry76znny2milm6"; depends=[clinfun formattable mvtnorm pracma splancs]; }; + rocbc = derive2 { name="rocbc"; version="3.1.0"; sha256="1c2lbh3zmgzi87irbrxx8bdvvnz9ck24839nci00ylh8dvwq8893"; depends=[clinfun formattable MRMCaov mvtnorm pracma pROC splancs]; }; rocc = derive2 { name="rocc"; version="1.3"; sha256="1j15l28c7kv7x850ycjprqi5gpbsl6wfv97h9lbrx11q5l4r9ivb"; depends=[ROCR]; }; roccv = derive2 { name="roccv"; version="1.2"; sha256="18kq2gzcbz97dw168xppql8k3slpkfl8yv1d8ac48damlhvipif1"; depends=[glmnet pROC]; }; rock = derive2 { name="rock"; version="0.8.1"; sha256="04byjz2k1wnjxbj22b307ghdrp7zz2ik5cxkxa0v980isfq5dv9i"; depends=[data_tree DiagrammeR DiagrammeRsvg dplyr ggplot2 glue htmltools markdown purrr yaml yum]; }; @@ -17103,22 +17376,22 @@ in with self; { rockr = derive2 { name="rockr"; version="1.0.0"; sha256="190xaxcbb7miqw5mxyfqqlb2vzacifc8a7a3cqfdlpxra4d4jc25"; depends=[httr jsonlite mime progress]; }; roclang = derive2 { name="roclang"; version="0.2.2"; sha256="1irqscbj89mfkbq66kb7k1cx2ygilqwr6spxsm36rgqfbk1j5g6m"; depends=[dplyr magrittr purrr rex rlang roxygen2 stringr tibble tidyr]; }; rocnp = derive2 { name="rocnp"; version="0.1.0"; sha256="1xqlmihhgjn6g3kabgmdx1qn18sxqd43sq3nb39i8pbwvaxhjqjr"; depends=[dplyr glue magrittr purrr rlang stringr tibble]; }; - rococo = derive2 { name="rococo"; version="1.1.7"; sha256="1fp3kk5j9kc0vyr50rlbsxjc9p3qz5137sifxsbd297p7zj1fcs2"; depends=[Rcpp]; }; + rococo = derive2 { name="rococo"; version="1.1.9"; sha256="1za16w2b8xazb1crl7701r0mqg0z3v86pyc3rvznwmyh3bzdaq0g"; depends=[Rcpp]; }; rocsvm_path = derive2 { name="rocsvm.path"; version="0.1.0"; sha256="1pd59bzcz96sxpp725pqa7pjh2gdrfapbilp4wccjkf5290zw56v"; depends=[quadprog svmpath]; }; rodd = derive2 { name="rodd"; version="0.2-1"; sha256="01zrkw4lr21vxk2grfc37iyrcipfdcj5m0i7gnxsvs435y9fqagd"; depends=[Matrix matrixcalc numDeriv quadprog rootSolve]; }; rodeo = derive2 { name="rodeo"; version="0.7.8"; sha256="0sqds225bvnw1z6a36f14fck0jnaa0ilz2n8ylkw6j5f7dx1yf0n"; depends=[deSolve R6]; }; rofanova = derive2 { name="rofanova"; version="1.0.0"; sha256="0w8c5c5q0s2qv1b4nxgf8y1z3g0l9c6jr6i0280b5mp9in9wn8a6"; depends=[abind fda_usc Rcpp RcppArmadillo robustbase]; }; roger = derive2 { name="roger"; version="1.5-1"; sha256="1k00xbc0iprcfjx6lgg5y910y76is8f984mcp4g6711zi16ljf5j"; depends=[]; }; rolap = derive2 { name="rolap"; version="2.5.1"; sha256="1j538xnfilrhhh3rk8rr1941353kn96a469h810h0h6l1cn5z2vp"; depends=[dm dplyr purrr readr rlang sf snakecase starschemar tibble tidyr tidyselect when xlsx]; }; - roll = derive2 { name="roll"; version="1.1.6"; sha256="1crzr0kqdls08n6i3769zrxbxvh2m4hv5k3xi6ky6ps8hhicwqc9"; depends=[Rcpp RcppArmadillo RcppParallel]; }; - rollama = derive2 { name="rollama"; version="0.0.3"; sha256="0r42r0wzjs6wjfq27g5z7d8xnx4h5ppfl8ls3pj0nza5zzwzdzfn"; depends=[callr cli dplyr httr2 jsonlite prettyunits purrr rlang tibble]; }; + roll = derive2 { name="roll"; version="1.1.7"; sha256="0kl3ag3yslw91nwhlyk16qfxs336n6x9087h7vgchi09i41cr04g"; depends=[Rcpp RcppArmadillo RcppParallel]; }; + rollama = derive2 { name="rollama"; version="0.1.0"; sha256="1sldaddmklqljfmmxqri0xfbsa977qg3kgymcprkybd59wbxxrd4"; depends=[callr cli dplyr httr2 jsonlite prettyunits purrr rlang tibble]; }; rollbar = derive2 { name="rollbar"; version="0.1.0"; sha256="1q2ym0vkgbdnibxmwx0bp9c20g3bm8fzwwgs3j4bxg1ydg3gnkj4"; depends=[httr]; }; rolldown = derive2 { name="rolldown"; version="0.1"; sha256="1awr8lcxz7y9mjhia4p85jvixc72gj525gk2jjl13njgq6shp0b5"; depends=[bookdown htmltools jsonlite]; }; rollinglda = derive2 { name="rollinglda"; version="0.1.3"; sha256="0xnj7p1b737308syqrgjcavjppb11rv8hrmyld31xwvnzkfarw01"; depends=[checkmate data_table ldaPrototype lubridate tosca]; }; rollmatch = derive2 { name="rollmatch"; version="2.0.3"; sha256="099nc02gxcd8vma9lpdiw449bcq7shp8p5z5ldj9bawll32k91sz"; depends=[dplyr magrittr]; }; roloc = derive2 { name="roloc"; version="0.1-2"; sha256="1f229racpdh12zyqwy8q1nbfkqzw90fdz2dkiycbv0j39rl6qkp8"; depends=[colorspace]; }; rolocISCCNBS = derive2 { name="rolocISCCNBS"; version="0.1"; sha256="100jh5m2c1zp5wg3wd4y2i47dzx1j0g6lfwyqmwk4bz99yzzz5am"; depends=[colorspace roloc]; }; - rolog = derive2 { name="rolog"; version="0.9.15"; sha256="1mgb7p4yqjwxrsjs16adcybjmhrylihv7279vjrxgfrlgqflnjxx"; depends=[Rcpp rswipl]; }; + rolog = derive2 { name="rolog"; version="0.9.17"; sha256="1h69xgj1gx8w8vrkrnwpcs1cakz08k8c9fzdh62bxbk512y7p5za"; depends=[Rcpp rswipl]; }; rolr = derive2 { name="rolr"; version="1.0.0"; sha256="04nm4q0mlr4w6jb0frykzlyknfn3gn02ysqr5ll5jch6wawichy2"; depends=[survival]; }; romic = derive2 { name="romic"; version="1.1.3"; sha256="0gaiysrg6f0xriphkbkmxvwrp3hk3spg26wlprw7lmi72k81mmaj"; depends=[checkmate cli dplyr ggplot2 glue purrr readr reshape2 rlang shiny stringr tibble tidyr]; }; rootSolve = derive2 { name="rootSolve"; version="1.8.2.4"; sha256="0p9qmn82bg0ks9hmh2dkygnzhxcnp5z8z8b8aq52w6clliz32sp1"; depends=[]; }; @@ -17137,7 +17410,7 @@ in with self; { rosetteApi = derive2 { name="rosetteApi"; version="1.14.4"; sha256="166p3dvib0xpvhkb92b3imassv1b9mrblz2m05jai2nzlz0q7hzk"; depends=[httr jsonlite]; }; rosm = derive2 { name="rosm"; version="0.3.0"; sha256="022f564d0qh3rivp6sxak4amib7c17m383vlfvac0vi0y4x49hf3"; depends=[curl glue jpeg png progress rlang wk]; }; rosmium = derive2 { name="rosmium"; version="0.1.0"; sha256="04ygbjvcp3gz61ac8r5d10jn1ivmwyrrya1lix4cj0g4hwxv6ipz"; depends=[checkmate geojsonsf processx sf]; }; - rospca = derive2 { name="rospca"; version="1.0.4"; sha256="1pxm34xsc2610n0i6dwcm4rhn016yqb03f8vrm93r7285c04n4q7"; depends=[elasticnet mrfDepth mvtnorm pcaPP pracma robustbase rrcov rrcovHD]; }; + rospca = derive2 { name="rospca"; version="1.1.0"; sha256="0my95jgza6irihdbsqj05sjfrhcy7705aca7j5qifkr21pk0n4dq"; depends=[elasticnet mrfDepth mvtnorm pcaPP pracma robustbase rrcov]; }; rosv = derive2 { name="rosv"; version="0.5.1"; sha256="1xgmn2n9iryijp36a7vzyaylc21wmfv2gjqn0qwa57hwy30f1wbw"; depends=[digest furrr httr2 jsonlite memoise purrr R6]; }; rotasym = derive2 { name="rotasym"; version="1.1.5"; sha256="04vmxfj7jwd6h1d5ns4hq8xbc4sm008vsyiw5jlp212a4fdrplaj"; depends=[Rcpp RcppArmadillo]; }; rotationForest = derive2 { name="rotationForest"; version="0.1.3"; sha256="1z2wk3mcs5hrahsxralidbc0dd8gxdbwjpr2f71g4g3isfx1ic8d"; depends=[rpart]; }; @@ -17158,7 +17431,7 @@ in with self; { roxylint = derive2 { name="roxylint"; version="0.1.0"; sha256="03pfianwlax9v9p1ciq80hzkswksca96vmcpn24nsjkqwam9nzgz"; depends=[cli roxygen2]; }; roxytest = derive2 { name="roxytest"; version="0.0.2"; sha256="17cxhdlywng6nky6c5m49yjs2pgrs1jqrzw6rj8kb6cp2zssclas"; depends=[roxygen2]; }; roxytypes = derive2 { name="roxytypes"; version="0.1.0"; sha256="02i2ki8s2dfnr3qdvgmklgsh0aidrymi46gp2x1xx2xfs6bi4mrv"; depends=[cli glue roxygen2]; }; - rpact = derive2 { name="rpact"; version="3.5.1"; sha256="0fn2hxikhwj2qzxj9d1dzay4kfjndbvfr9iykw4rbn0fy7qcixh2"; depends=[knitr Rcpp rlang]; }; + rpact = derive2 { name="rpact"; version="4.0.0"; sha256="1mwsy5y917sihyq3i001hzz98zx5zvm8042inv072vxik2pybngc"; depends=[knitr R6 Rcpp rlang]; }; rpaleoclim = derive2 { name="rpaleoclim"; version="1.0.1"; sha256="1fqlqs8l18dy5l24hzyj19hdk6yaxmd25g56hg1c6cm677z1xcli"; depends=[curl fs rlang terra]; }; rpanel = derive2 { name="rpanel"; version="1.1-5.2"; sha256="0b9r458dx65p1s0az14s3bhyh5isqx5ax9dblpsxxm6i9jcnx8f9"; depends=[]; }; rpart = derive2 { name="rpart"; version="4.1.23"; sha256="1bxbvbv3jwz1j6yhgswbr6qy574n9rbp3cnwl9badkm6dbnrmf7r"; depends=[]; }; @@ -17168,13 +17441,13 @@ in with self; { rpca = derive2 { name="rpca"; version="0.2.3"; sha256="135q3g8jmn9rwamrc9ss45cnbfyw8kxcbrf0kinw8asz70fihj9z"; depends=[]; }; rpdo = derive2 { name="rpdo"; version="0.3.2"; sha256="0sh52y7hmnm9qhyp0m6vp3c23wzz3ds8j577z105s6f3pdf398l0"; depends=[chk lifecycle]; }; rpf = derive2 { name="rpf"; version="1.0.14"; sha256="15pp6fdqxngsmcibxfzv72g25q3ww3hrazsl4c5fgi0fh450kfz4"; depends=[lifecycle mvtnorm Rcpp RcppEigen]; }; - rphylopic = derive2 { name="rphylopic"; version="1.3.0"; sha256="1v6fz6kl9y92g714mjlwc36jajd1fismjsbx8y95sfz6l065kvma"; depends=[curl ggplot2 grImport2 httr jsonlite knitr lifecycle pbapply png rsvg]; }; + rphylopic = derive2 { name="rphylopic"; version="1.4.0"; sha256="13kgk5icqs6n6v985p0r0ifiham0m7i2w4ds8pr52mvizg76ymmi"; depends=[curl ggplot2 grImport2 httr jsonlite knitr lifecycle pbapply png rsvg]; }; rpinterest = derive2 { name="rpinterest"; version="0.3.1"; sha256="0kkf73byhgzqxw85wda3nh7qsq81pc035vi6z3fhnvb9ssszwakc"; depends=[httr magrittr rjson]; }; rpivotTable = derive2 { name="rpivotTable"; version="0.3.0"; sha256="0ndhsw4nnz6wf0v8dh4sz8867m01jjkzw6aq7f490z1ypa3d9fv5"; depends=[htmlwidgets]; }; rplotengine = derive2 { name="rplotengine"; version="1.0-9"; sha256="0bmxn578z1arjical1xhzy7ib32ys7p8wkmrjw1b66islwi4b79k"; depends=[xtable]; }; rpls = derive2 { name="rpls"; version="0.6.0"; sha256="0r3y63pi4d7hfzs53d9w23ymmk86gvm85v0dx7n1gicha5nn1mk8"; depends=[pcaPP robustbase]; }; rplum = derive2 { name="rplum"; version="0.4.0"; sha256="0fwzfbbg5dv0rg0w8xijn9zjrp5gclzrf8m2m8nla61dzbpn2jsx"; depends=[rbacon rintcal]; }; - rpm = derive2 { name="rpm"; version="0.7-1"; sha256="0kr1hzhfx1kxrrszvvk6xwfy2vpp1vqn75xi3l70m275ay8kip6p"; depends=[abind coda doFuture doRNG dplyr foreach future ggplot2 MASS matrixStats nloptr Rcpp RcppArmadillo]; }; + rpm = derive2 { name="rpm"; version="0.7-3"; sha256="1bzlvyrjib7wgv57didcqmlvzv4skp587jmn7vpfwpqb4lkp7ia1"; depends=[abind coda doFuture doRNG dplyr foreach future ggplot2 MASS matrixStats nloptr Rcpp RcppArmadillo]; }; rpmodel = derive2 { name="rpmodel"; version="1.2.0"; sha256="131kzag51r1fpa63xzj77b9hh4b1723lc424ch8dhbrcdrnjh730"; depends=[]; }; rpms = derive2 { name="rpms"; version="0.5.1"; sha256="1y686da4ylv403gbfx43yaa2i2zdcgdv9p1zmlq05dvbkjkvlvw9"; depends=[Rcpp RcppArmadillo]; }; rpnf = derive2 { name="rpnf"; version="1.0.5"; sha256="07byg0ym4d2cr6fp74z379jhsaw4c0xrwf622dvhwa4frn4anl60"; depends=[]; }; @@ -17192,10 +17465,10 @@ in with self; { rptR = derive2 { name="rptR"; version="0.9.22"; sha256="0vvjc6qiq71d5wckl77z606q1fp43mgrfzp1bxcab96n5whb2r9k"; depends=[lme4 pbapply]; }; rpyANTs = derive2 { name="rpyANTs"; version="0.0.3"; sha256="1dmlpwx9x1gh2x0a4krp0v5a4km7pp65zalvbibb6r69iqmqr858"; depends=[reticulate RNifti rpymat]; }; rpymat = derive2 { name="rpymat"; version="0.1.7"; sha256="0zrq4j0xw4blv9bsdrnkf0wb61bsm1lrlh92a2qw8p3daa48833q"; depends=[fastmap glue IRkernel jsonlite rappdirs reticulate rstudioapi]; }; - rqPen = derive2 { name="rqPen"; version="3.2.2"; sha256="1l9kg5i7sx64860fbdnvb7ijpyxckqj3qq007hyn795akyr7ks68"; depends=[data_table hqreg hrqglas lifecycle plyr quantreg Rdpack]; }; + rqPen = derive2 { name="rqPen"; version="4.1.1"; sha256="112x6y6ykmd1isw19xdpzn8alf5llz6jp7l5pfi6vp22w27z852w"; depends=[data_table hqreg hrqglas lifecycle Matrix plyr quantreg Rcpp RcppArmadillo Rdpack]; }; rqdatatable = derive2 { name="rqdatatable"; version="1.3.3"; sha256="08bjhfay2n58zsa19r81b8884zahdxi1rylhs4a241sqc0zmns23"; depends=[data_table rquery wrapr]; }; - rqlm = derive2 { name="rqlm"; version="1.2-1"; sha256="0vyz4q239dvbgkhq8jsdxc8blygaa3hk0whm7fff4bhmadqi7wbw"; depends=[MASS sandwich]; }; - rqti = derive2 { name="rqti"; version="0.1.1"; sha256="0y20pkj1i6pj9c10gkjnkzxpnmj10fgqngkj3s3khdvz1bn0cxbv"; depends=[curl digest fs getPass htmltools httr2 kableExtra keyring knitr lubridate magrittr rmarkdown rstudioapi servr stringr xml2 yaml zip]; }; + rqlm = derive2 { name="rqlm"; version="2.1-1"; sha256="1l11l4p7d331jspfwnsjawfg1mk91v78fp669586jq9xs9vv25fb"; depends=[MASS mice sandwich]; }; + rqti = derive2 { name="rqti"; version="0.2.1"; sha256="0waayqsqwydd3mv5zplbivqspxnkdznq47mj8v5yyzf28042aax7"; depends=[curl digest fs getPass htmltools httr2 kableExtra keyring knitr lubridate magrittr rmarkdown rstudioapi servr stringr textutils xml2 yaml zip]; }; rquery = derive2 { name="rquery"; version="1.4.99"; sha256="0540xw33wxk4w73s234pc0ss6vffzdkz7wqlca67im9h4sph19y3"; depends=[wrapr]; }; rr = derive2 { name="rr"; version="1.4.2"; sha256="1xzyys6hjh01iy66a63sxda502pr4jr79pz0kcml9vgaqwf16bdp"; depends=[arm coda magic MASS]; }; rr2 = derive2 { name="rr2"; version="1.1.1"; sha256="0c80zl8qyfd4fdvxp381vixfr8q2dxzn2j7siqawf0dbbvxpdr73"; depends=[ape lme4 Matrix nlme phylolm phyr]; }; @@ -17223,14 +17496,14 @@ in with self; { rrtable = derive2 { name="rrtable"; version="0.3.0"; sha256="1y1hfscnw466azxk1c2kpa486xn8561zl5inv7yk5q8926ls2zc3"; depends=[devEMF editData flextable ggplot2 ggpubr magrittr moonBook officer purrr readr rlang rmarkdown rvg shiny shinyWidgets stringr ztable]; }; rrum = derive2 { name="rrum"; version="0.2.1"; sha256="047gsyipvbaw4n2i103fsj1dp0rqwvh5dqhjgiclzb9h7vm840gv"; depends=[Rcpp RcppArmadillo rgen simcdm]; }; rsae = derive2 { name="rsae"; version="0.3"; sha256="1722vv5c0qbksb22yhsx28wxhsl7i7pc0y5w2bzfaksls3nk2knf"; depends=[]; }; - rsample = derive2 { name="rsample"; version="1.2.0"; sha256="1vayyj6cijq1ag9r7fpcjfzrgkqhb4zxgajz78hz8dq01q3bgjg0"; depends=[cli dplyr furrr generics glue lifecycle pillar purrr rlang slider tibble tidyr tidyselect vctrs]; }; + rsample = derive2 { name="rsample"; version="1.2.1"; sha256="1igdcicympnbrypb5c47bmf4q997q6s98i1lzb4x29x53vr3gx73"; depends=[cli dplyr furrr generics glue lifecycle pillar purrr rlang slider tibble tidyr tidyselect vctrs]; }; rsat = derive2 { name="rsat"; version="0.1.21"; sha256="1fi2xy9q49w77b0xgqqny8y5v53jxybdpysv0mw4nlfq0q8glvgx"; depends=[calendR curl fields httr leafem leaflet raster Rdpack rjson rvest sf sp stars terra tmap XML xml2 zip]; }; rsatscan = derive2 { name="rsatscan"; version="1.0.7"; sha256="14q568xyigjsq8g98y393ln7m45bnrf3sy201mi7432wzxjl6ia8"; depends=[foreign]; }; rscc = derive2 { name="rscc"; version="0.2.1"; sha256="10srbalj8i67z30amvf08zfa4hs6phvq17kfgys9ihwaknckcyx3"; depends=[crayon formatR highlight igraph tm]; }; - rsconnect = derive2 { name="rsconnect"; version="1.2.1"; sha256="0snfzr2xf91630hd2w1q9yy09vlfdy4dzb9gc8g14nq9hh34h999"; depends=[cli curl digest jsonlite lifecycle openssl packrat renv rlang rstudioapi yaml]; }; + rsconnect = derive2 { name="rsconnect"; version="1.3.1"; sha256="0msmrdw7933xics464asyy9v2gm5b4jb8gr4nfhy54x45n1qmpj7"; depends=[cli curl digest jsonlite lifecycle openssl packrat PKI renv rlang rstudioapi yaml]; }; rscontract = derive2 { name="rscontract"; version="0.1.2"; sha256="0gn0xcvg9nj6m97g4si6bgmgaj6hxpicz8yig7n84jnczh6w510x"; depends=[]; }; rscopus = derive2 { name="rscopus"; version="0.6.6"; sha256="0kl6rv0j2396b8izvy0lp1f588il6w3yhq6d4swv8x8z14rsgcpw"; depends=[dplyr glue httr jsonlite plyr tidyr]; }; - rscorecard = derive2 { name="rscorecard"; version="0.26.0"; sha256="0l0xx5q93na2fbl1gb11mv4xd514jmkhz95w4054pdmrq6smdc97"; depends=[dplyr httr jsonlite lazyeval magrittr purrr tidyr]; }; + rscorecard = derive2 { name="rscorecard"; version="0.28.1"; sha256="090n5sw7r6qhcryi41agnh65mqny01s1a0h7m9ksf8mzvwpqdqv5"; depends=[dplyr httr jsonlite lazyeval purrr tibble tidyr tidyselect]; }; rsdNE = derive2 { name="rsdNE"; version="1.1.0"; sha256="0xjnkg009m51zfwih1rpgwch8bs7vvri0x4skrikzx3nvlszcjh3"; depends=[]; }; rsdepth = derive2 { name="rsdepth"; version="0.1-22"; sha256="067mx424qvl9xskcd5r5i3dp92mwjcc8xpd9kd1y0yjbax0dkcg9"; depends=[]; }; rsdmx = derive2 { name="rsdmx"; version="0.6-3"; sha256="0axy02p6kh67sc1nqp67sa1i2n3r24j1cdd3lczxzfkxms0qznc7"; depends=[httr plyr R6 XML]; }; @@ -17240,24 +17513,25 @@ in with self; { rsf = derive2 { name="rsf"; version="0.3.0"; sha256="0vlnmqj6if2d8m4frdyarc985s73zapsj74rjv1nv074z422l2ci"; depends=[bookdown gert here knitr magrittr renv rlang usethis yaml ymlthis]; }; rsgeo = derive2 { name="rsgeo"; version="0.1.6"; sha256="04mv8ifl1k2vqacglw0j41j96l9ls8khiligjhk499c5zg4aadip"; depends=[rlang vctrs]; }; rshift = derive2 { name="rshift"; version="3.0.0"; sha256="0w82dqya4qmcdpin1d7pg2cri69qjsm1qhjn2gfpbs6wkd7m7mic"; depends=[dplyr ggplot2 tibble]; }; - rsi = derive2 { name="rsi"; version="0.1.2"; sha256="11in248gaixjm6g9qrnl4l60lghiclrgzijqcgncz4bd9v47d3rv"; depends=[future_apply glue jsonlite proceduralnames rlang rstac sf terra tibble]; }; + rsi = derive2 { name="rsi"; version="0.2.0"; sha256="1r6igxar0mbnqscnrp7mq98isi40njiwf8377rk2qpyq69108v7h"; depends=[future_apply glue httr jsonlite lifecycle proceduralnames rlang rstac sf terra tibble]; }; + rsides = derive2 { name="rsides"; version="0.1"; sha256="08vwk7d7p6m38gmnbmx50kb44jhxdxvq6pbm6ym66ifhlxmbigr1"; depends=[BH doParallel doRNG flextable foreach officer Rcpp RcppEigen survival xml2]; }; rsimsum = derive2 { name="rsimsum"; version="0.13.0"; sha256="1crxqx3vhnwrjwr556dw6qq9789jgccvv9z2bbqi003h7w483q5k"; depends=[checkmate generics ggplot2 ggridges knitr lifecycle rlang scales]; }; rsinaica = derive2 { name="rsinaica"; version="1.0.0"; sha256="0ndskcgzd38mblk3xfazszhh3f5fjlmz6rmc297nka2c8rw56lz2"; depends=[dplyr httr jsonlite lubridate stringr]; }; rskey = derive2 { name="rskey"; version="0.4.4"; sha256="1la3apypp1kk425r753vqwm3nk9zmynp9gix6db0ckkssw0fjxpw"; depends=[berryFunctions rstudioapi]; }; - rsleep = derive2 { name="rsleep"; version="1.0.12"; sha256="1sqczgfkpa7bg8hbmy0baxlb9n6r76g4n5nh19v50wrdh87h3771"; depends=[abind dplyr edfReader ggplot2 jsonlite psd readr signal xml2 xts]; }; rslp = derive2 { name="rslp"; version="0.2.0"; sha256="186k1gngirqhvhii4ysq77wjf5gf75c7gya73minb0pfg9fn16l7"; depends=[magrittr plyr stringi stringr tokenizers]; }; rslurm = derive2 { name="rslurm"; version="0.6.2"; sha256="0z5lyrkvfh2201sc772gzbz3hc1mc04pxww611iwjf6qwzn5h0al"; depends=[whisker]; }; - rsm = derive2 { name="rsm"; version="2.10.4"; sha256="1bh2kp0j10zsrkhv9ylghbi9cyrj4q6crbngv9pk0kkby2r4am2h"; depends=[estimability]; }; + rsm = derive2 { name="rsm"; version="2.10.5"; sha256="064gsbaxg9s1f8aq7lb1s9kdd0s0qca95905i8zqbwvpaim1w6q0"; depends=[estimability]; }; rsmatch = derive2 { name="rsmatch"; version="0.2.1"; sha256="0fncr8gakhldnvlzyv2sb2cqz3ninnwa353l8vvxvy122lnjlwbz"; depends=[dplyr MASS Matrix]; }; rsmatrix = derive2 { name="rsmatrix"; version="0.2.8"; sha256="1yc9zhfpzadlk39z7lzxd26qmg9hq24c32md7bkny6yyrhy857sn"; depends=[Matrix]; }; rsnell = derive2 { name="rsnell"; version="0.1"; sha256="0syz4d761sfka7ykg574sdzp3gi781m6xzz2m1d0yfmb1hl2d2xz"; depends=[dplyr tibble tidyr tidyselect]; }; + rsocialwatcher = derive2 { name="rsocialwatcher"; version="0.1.1"; sha256="1ch8n35pa325ihgkld8j8mrgn631r9m1b10r68a08ydj1nxrjv9z"; depends=[curl dplyr httr jsonlite lubridate purrr sf splitstackshape stringr]; }; rsoi = derive2 { name="rsoi"; version="0.5.6"; sha256="0x22mh27bsjrpc90dss59ycib6qlpvk9vb9p07fxlk6b68vdfi06"; depends=[curl memoise]; }; rsolr = derive2 { name="rsolr"; version="0.0.13"; sha256="1pky70f4w44xaz57ricq40c950l443q693h0wfvk684wcvgnga0s"; depends=[BiocGenerics graph RCurl restfulr rjson S4Vectors XML]; }; rspa = derive2 { name="rspa"; version="0.2.8"; sha256="0cl00y9xy5iwmx003zja7b21db5sib7izs8qgmp6731w68bvdj2q"; depends=[lintools validate]; }; rsparkling = derive2 { name="rsparkling"; version="0.2.19"; sha256="1rb43lslhlg8jpniirzch8gnl86x6d3shcfp9fpxm0qd3fqrlm6z"; depends=[h2o sparklyr]; }; rsparse = derive2 { name="rsparse"; version="0.5.1"; sha256="15kdllm2lh6xdlv4j0ljyj5pczhx26s9d8cac7953zbb0sd45chz"; depends=[data_table float lgr Matrix MatrixExtra Rcpp RcppArmadillo RhpcBLASctl]; }; rspiro = derive2 { name="rspiro"; version="0.4"; sha256="1k91zdph8inkdyafz73lacbgq8x7rp55407rkpnr7nf0sbshxrr2"; depends=[]; }; - rspm = derive2 { name="rspm"; version="0.5.0"; sha256="03wr8m6vk6fbxvpir3hfg3pjv22x5l641b6089zk468iygylg2a4"; depends=[]; }; + rspm = derive2 { name="rspm"; version="0.5.3"; sha256="0zl3mpr1k40jfhx45xhjvwr4p7qpyxnaphrc5mbjypflaxcns4ym"; depends=[]; }; rsppfp = derive2 { name="rsppfp"; version="1.0.4"; sha256="123yv54i58xj4wx9n08qp50mm4l271fm1zhzimrxx22wn2bg8zy5"; depends=[doParallel dplyr foreach igraph stringr tidyr]; }; rsprite2 = derive2 { name="rsprite2"; version="0.2.1"; sha256="1j1v9d5h2p9574zsl8gi4lkmq1yblklmpd40fd19bw1p67fqhpm0"; depends=[checkmate Rdpack]; }; rsq = derive2 { name="rsq"; version="2.6"; sha256="01b9rl2ng1sq0ibpfsf50agkwh01pfpw354vvgdjd0lzh9dxmsgp"; depends=[deming Deriv lme4 MASS Matrix nlme]; }; @@ -17278,18 +17552,19 @@ in with self; { rstudioapi = derive2 { name="rstudioapi"; version="0.16.0"; sha256="1rjgxn7p15a69vfkhwrxywag6w9k4ccnklpvhr1sb1wy35ksizvl"; depends=[]; }; rsubgroup = derive2 { name="rsubgroup"; version="1.1"; sha256="16glxyv6aja7j0vfjccfi8w84wzm2ajfl62l0g5vpl73j7cs6gnk"; depends=[foreign rJava]; }; rsurface = derive2 { name="rsurface"; version="1.1.0"; sha256="1pymbgvr72nqd66wap5wrcizzx2k9bfr6vkxv6dkvjmi8q7jl2gv"; depends=[plotly rsm]; }; + rsurv = derive2 { name="rsurv"; version="0.0.1"; sha256="1xin45sc6zlap0w2ydq0ji4w3kz4ksvhark7vgim6vb1d1zv3py0"; depends=[dplyr Rdpack stabledist]; }; rsurveycto = derive2 { name="rsurveycto"; version="0.1.6"; sha256="1w9xg2qcgqachc8y24vqxgw701si5g9qb5ps68lrn4w33hbywzjl"; depends=[checkmate cli curl data_table glue httr jsonlite rlang withr]; }; rsvd = derive2 { name="rsvd"; version="1.0.5"; sha256="07p2hjmpcwcsang8z9sjkpy94rydcin7m3hyvcgzgm5cd6w8c1p4"; depends=[Matrix]; }; rsvddpd = derive2 { name="rsvddpd"; version="1.0.0"; sha256="0p2cpv3ipkvl27zhncpcyxp6lqw54ncdnxyk659qc24l0fqbw7dc"; depends=[MASS matrixStats Rcpp RcppArmadillo]; }; rsvg = derive2 { name="rsvg"; version="2.6.0"; sha256="0w29isj7n33vwacvk5h6ghgm9j3phghnz7a98b1xi60cyk08qi2b"; depends=[]; }; - rswipl = derive2 { name="rswipl"; version="9.3.3"; sha256="1pjd6kzgzhd9rabcvp9d1qbmjrxwpp36bic48d4k0z5l8xj4qaw1"; depends=[Rcpp]; }; + rswipl = derive2 { name="rswipl"; version="9.3.5.1"; sha256="07l9vrjn4cfzz517sqn9q7aj4026b2bqbqm15agr2211z3ppjfmz"; depends=[Rcpp]; }; rsyncrosim = derive2 { name="rsyncrosim"; version="1.5.0"; sha256="0pg7i40m8qjcfwamb9prhkzyf4571jgnamqibxzd35n6vm6s9npy"; depends=[DBI gtools lifecycle RSQLite terra]; }; rsyntax = derive2 { name="rsyntax"; version="0.1.4"; sha256="0bmi0qc535scdzrdr9sxnigby5ynw9dk95f99p55plc506z3pfya"; depends=[base64enc data_table digest igraph magrittr png rlang stringi tidyselect tokenbrowser]; }; rsyslog = derive2 { name="rsyslog"; version="1.0.3"; sha256="1wslqvc8d49qz13vixfb8pqinb5p1k0w297wvflslhfkk5rx98x4"; depends=[]; }; rt = derive2 { name="rt"; version="1.1.0"; sha256="1wwx3pjwsqvar25cddc4090vcngir81a7n9yiv4q8i47h58xmc2g"; depends=[httr stringr]; }; rt_test = derive2 { name="rt.test"; version="1.18.7.9"; sha256="0ywkdjvfzmrmmsfkz4jbhwzbzv7wivx80xy8wr92dch1862h6ias"; depends=[]; }; rt3 = derive2 { name="rt3"; version="0.1.2"; sha256="1fqbymkz4csavkxrs26glzrh0kw3qy9x5smgddgda9a1dxh9ljkm"; depends=[]; }; - rtables = derive2 { name="rtables"; version="0.6.6"; sha256="003hsjp023gxbidk3m3i78hvak9ixv2c5yv1h7kfjir0jcgjm2gp"; depends=[checkmate formatters htmltools magrittr stringi]; }; + rtables = derive2 { name="rtables"; version="0.6.7"; sha256="0x0wnv3zscbb4csgg656518krc88pqss7pd40n61q474mf6jj5s7"; depends=[checkmate formatters htmltools magrittr stringi]; }; rtape = derive2 { name="rtape"; version="2.2"; sha256="0q7rs7pc1k1kayr734lvh367j5qig2nnq5mgak1wbpimhl7z3wm7"; depends=[]; }; rtdists = derive2 { name="rtdists"; version="0.11-5"; sha256="1v8yhyvliw3dm3ciwxxaa9spfw05wp334l7gmvgv20mab2kjxkwp"; depends=[evd gsl msm Rcpp]; }; rtematres = derive2 { name="rtematres"; version="0.2"; sha256="1d0vrprvnlk4hl2dbc6px9xn9kx9d1qvlqxd798hzda6qg5wwvf2"; depends=[gdata plyr RCurl XML]; }; @@ -17297,7 +17572,7 @@ in with self; { rtern = derive2 { name="rtern"; version="0.1.2"; sha256="0i9493f3rykhjxwbvydz6aikzkwfphq3dyc8jw0fzw057zd24cgb"; depends=[rlang]; }; rtf = derive2 { name="rtf"; version="0.4-14.1"; sha256="032ff0yavqmd2d9svgwkmvxwh0cxjbac6pj48v4cshi898f02rhh"; depends=[R_methodsS3 R_oo]; }; rtgstat = derive2 { name="rtgstat"; version="0.3.2"; sha256="1alvs2gd0kp11vlnk6ql2hk6fm1mn5wdkm6p9c8amb1n6i3c097x"; depends=[cli dplyr httr2 purrr snakecase stringr tidyr]; }; - rticles = derive2 { name="rticles"; version="0.26"; sha256="0v1sji223iifqmq9hakr1wcgzfca52nvmh3vbi6s6d309qc77vkk"; depends=[knitr lifecycle rmarkdown tinytex xfun yaml]; }; + rticles = derive2 { name="rticles"; version="0.27"; sha256="1a5i8vzcf058dqk30yir3ngs02f17s4d0b0px31pxa0d1ak1yfh7"; depends=[knitr lifecycle rmarkdown tinytex xfun yaml]; }; rticulate = derive2 { name="rticulate"; version="1.7.3"; sha256="0h22ixngz4nw85s79ssanms9ysvx0kgp0srq2nvyfk4mm7g4hfi7"; depends=[dplyr ggplot2 glue magrittr mgcv purrr readr rlang tibble tidymv tidyr tidyselect]; }; rtiddlywiki = derive2 { name="rtiddlywiki"; version="0.1.0"; sha256="1nipbly7b6gn49rwy6mrbg1bnh437qyayxrnskixc0fifzln43xl"; depends=[bookdown httr jsonlite rmarkdown settings stringr]; }; rtide = derive2 { name="rtide"; version="0.0.9"; sha256="0gr0j52jy7y1w1s0s88rjv9l85yvavypagmi0qw2ix9ca2xadlzl"; depends=[abind chk dttr2 tibble]; }; @@ -17306,20 +17581,20 @@ in with self; { rtip = derive2 { name="rtip"; version="1.1.1"; sha256="0lfny8nvgnf90xsmgmr32nzjbw8117m4vw7d0bc3xm4pzpnymjdq"; depends=[boot ggplot2 mvtnorm plyr rootSolve]; }; rtist = derive2 { name="rtist"; version="1.0.0"; sha256="0p4jlz0z0nbvmixdrym6nqagz2i28zbsijcj785rd6wiy72d2hg5"; depends=[]; }; rtk = derive2 { name="rtk"; version="0.2.6.1"; sha256="1xafmp5y5p8fnsh16wj8n08x69v2hawnsvsy7g4dcz1i5xkhyc0m"; depends=[Rcpp]; }; - rtkore = derive2 { name="rtkore"; version="1.6.10"; sha256="1mdvlqnhp0m79j5ak81i91w5y1jqh43f6qyxajn20a8jryj0f68b"; depends=[inline Rcpp]; }; + rtkore = derive2 { name="rtkore"; version="1.6.12"; sha256="10mwa5m6papd6a3vx7zb36fy93wjkhzyxgcvi3i88lslh5hsccnm"; depends=[inline Rcpp]; }; rtlr = derive2 { name="rtlr"; version="0.1.0"; sha256="1jvm45kkz6gfwnhaxy06snh1r3qc4ayrb84mi2zy2n2axhb2lvng"; depends=[lifecycle stringr]; }; - rtmpt = derive2 { name="rtmpt"; version="2.0-0"; sha256="1bmibm83a0p90xk7j1qfybi5yllhs2740nqjkhy1livxp5qizngq"; depends=[coda data_table loo Ryacas stringr truncnorm]; }; + rtmpt = derive2 { name="rtmpt"; version="2.0-1"; sha256="0isd7vwr1qbyzym0awmgb38fiix8v8r46ckl0d24q0hqls3aydz5"; depends=[coda data_table loo Ryacas stringr truncnorm]; }; rtms = derive2 { name="rtms"; version="0.2.0"; sha256="0zqa386i37wlicwriahmjmx39q4pqyx92p8v895w8s1nssma8nnh"; depends=[ggplot2]; }; rtodoist = derive2 { name="rtodoist"; version="0.1.0"; sha256="12lh14ps4snlyykhc65nvn8ipic8is8ssmgcx73snmifhrzxgdyb"; depends=[digest dplyr getPass glue httr keyring magrittr purrr]; }; rtoot = derive2 { name="rtoot"; version="0.3.4"; sha256="0zil9zkmgwmncw1q4nxrnz93bmjg0lfa34qbrf6a5yj63x4dmwar"; depends=[clipr curl dplyr httr jsonlite tibble]; }; rtop = derive2 { name="rtop"; version="0.6-9"; sha256="0ksvjyrcyygv68sp8ygnh2fd1vpp1vf10xviclnlm2rm829hjmr1"; depends=[gstat sf sp units]; }; + rtpcr = derive2 { name="rtpcr"; version="1.0.9"; sha256="0pwwkcgzhmhdc5fic8h623w1qggmaa3cb1li6vprsxi4k5diq44c"; depends=[dplyr emmeans ggplot2 lmerTest multcomp multcompView purrr reshape2 tidyr]; }; rtrek = derive2 { name="rtrek"; version="0.4.0"; sha256="0w5726mjy8yf9h1kk3snqc4rqbg6b55ybvkbk5xqnp5iarnsd7v4"; depends=[downloader dplyr ggplot2 jpeg jsonlite memoise purrr rvest tibble tidyr xml2]; }; rtrend = derive2 { name="rtrend"; version="0.1.5"; sha256="03spmnqbydwfv0nx0rmp6pj67y8vxaqwaj2c76jrrk5qmjvpjkc1"; depends=[boot fftwtools lubridate magrittr matrixStats plyr Rcpp RcppArmadillo terra]; }; rtrends = derive2 { name="rtrends"; version="0.1.0"; sha256="04xdggf36m294drb9z8khdjr6fgsg4bwkb4mmbbvqfzjpq4mq4y1"; depends=[dplyr lubridate tidyr]; }; - rtrim = derive2 { name="rtrim"; version="2.1.1"; sha256="1l2ijkm4p3nd7n4q1b4y9pdyafgyf76zizpi7hhzw1rr9zkxhff2"; depends=[]; }; rtry = derive2 { name="rtry"; version="1.1.0"; sha256="00a9sm08il7g0hq62jxsfib8952wdlkrhlrljnxahmaixghn7hww"; depends=[curl data_table dplyr jsonlite magrittr tidyr]; }; rts = derive2 { name="rts"; version="1.1-14"; sha256="07rnpn8bz9r7p6xymzmbynrg2xq8wfpzh50j7i578v6rmyhm2fl8"; depends=[raster RCurl terra xts zoo]; }; - rts2 = derive2 { name="rts2"; version="0.7.2"; sha256="1fqklpffxdwz58512fpja6hpc5x63fk5cxj44r3nlrwnb442g9p3"; depends=[BH glmmrBase lubridate R6 Rcpp RcppEigen RcppParallel rstan rstantools sf SparseChol StanHeaders]; }; + rts2 = derive2 { name="rts2"; version="0.7.4"; sha256="13s1v4izqhq3w6ahna228wgs3n9zxqbmxzjjy69lmvrksfrkdy57"; depends=[BH glmmrBase lubridate R6 Rcpp RcppEigen RcppParallel rstan rstantools sf SparseChol StanHeaders]; }; rtsdata = derive2 { name="rtsdata"; version="0.1.4"; sha256="0djw6qp6jdkz4r0j5dzjql2rhap4syl7psdglgd9razv5vzqmn6c"; depends=[anytime brotli curl data_table mongolite Quandl quantmod xts zoo]; }; rtson = derive2 { name="rtson"; version="1.3"; sha256="1gwvk7nmq9bz90jy1zh7lhr735iw804pmwxykdpaigcsnxk7zx03"; depends=[R6]; }; rtsplot = derive2 { name="rtsplot"; version="0.1.5"; sha256="1vryh0s1mz9h9ksf5n27vvrdbsjk8yvizd31cnj4grz71v4c1dh1"; depends=[quantmod RColorBrewer xts zoo]; }; @@ -17330,14 +17605,15 @@ in with self; { rucm = derive2 { name="rucm"; version="0.6"; sha256="1n6axmxss08f2jf5impvyamyhpbha13lvrk7pplxl0mrrrl5g0n8"; depends=[KFAS]; }; rucrdtw = derive2 { name="rucrdtw"; version="0.1.6"; sha256="0qa6jw6g8ax5l2js09px4chy4n0ibvprj0ygdh3iwf1pbskw3kma"; depends=[Rcpp]; }; rugarch = derive2 { name="rugarch"; version="1.5-1"; sha256="07nyfwaqqlizg0cawgiv8wdj7qr36pgi0z1mk9lambzb0w453zlz"; depends=[chron ks nloptr numDeriv Rcpp RcppArmadillo Rsolnp SkewHyperbolic spd xts zoo]; }; - ruijter = derive2 { name="ruijter"; version="0.1.2"; sha256="0phsqnwh47hwl26qihgrrlrazhdzhi6jnmhbylzkpqsclcpl52b7"; depends=[]; }; + ruijter = derive2 { name="ruijter"; version="0.1.3"; sha256="0gdpl32acwq8cjsv04s5p6rwc1v3x59p4knm4qlzlgmv5dsvil64"; depends=[tibble]; }; ruimtehol = derive2 { name="ruimtehol"; version="0.3.2"; sha256="1fjyrcqb1hv86xwdq5zds8gdgnvcv1nnbh5j7mf17870miy0vzln"; depends=[BH Rcpp]; }; ruin = derive2 { name="ruin"; version="0.1.1"; sha256="124xs1c2mjfy6z0bp83rwkqw2y73g77xwn3q4yd2xw0v2frnpvpz"; depends=[ggplot2]; }; ruler = derive2 { name="ruler"; version="0.3.0"; sha256="0k6xvb06cqiinvkpbmylzm0r11h52yay6k70jfmz2c0g5rb6bj4r"; depends=[dplyr keyholder magrittr purrr rlang tibble tidyr]; }; rules = derive2 { name="rules"; version="1.0.2"; sha256="1y9872akqsb1lm9hyj698dxakd53yxhbanv4z2yb43g84s5bsscl"; depends=[dials dplyr generics parsnip purrr rlang stringr tidyr]; }; rumidas = derive2 { name="rumidas"; version="0.1.2"; sha256="1y2fahyffdmnybj3hi4826sc7m5q9vvrcbz4xvd9dmm1zpgjqajx"; depends=[lubridate maxLik Rdpack roll tseries xts zoo]; }; - ruminate = derive2 { name="ruminate"; version="0.2.2"; sha256="0zvkjg5wc45cwnhmx3znqfil6kvhjvfb2vx56j4044ywcjgqpwga"; depends=[digest dplyr DT flextable formods ggplot2 onbrand PKNCA plotly rhandsontable rlang rxode2 shiny shinyAce shinyWidgets stringr tidyr yaml]; }; - runMCMCbtadjust = derive2 { name="runMCMCbtadjust"; version="1.0.5"; sha256="0lf14704h1a5zfpq8f4h2f5isvsn7j4bj5ks4y5p362hrin07ld0"; depends=[coda]; }; + ruminate = derive2 { name="ruminate"; version="0.2.4"; sha256="1i3b5mlg4kcd8hsphax75r046yq180jrbnyr7iylkyilf6dgqyyf"; depends=[digest dplyr DT flextable formods ggplot2 onbrand PKNCA plotly rhandsontable rlang rxode2 shiny shinyAce shinyWidgets stringr tidyr yaml]; }; + runDRT = derive2 { name="runDRT"; version="0.1.0"; sha256="1q90xismkzdpx7hfsyjpagv3jdj8slmdpdf7f2kbw6lx5mcv4v3x"; depends=[]; }; + runMCMCbtadjust = derive2 { name="runMCMCbtadjust"; version="1.1.1"; sha256="1m4f0vx69y060pm1asbbk166y0ih0vmqywwwc7fn8c4frj07g40k"; depends=[coda]; }; runcharter = derive2 { name="runcharter"; version="0.2.0"; sha256="0n4jkgvlbpafjks22fjackazp246c7skphirjsrzkrg169qwdin0"; depends=[data_table ggplot2 magrittr zoo]; }; runes = derive2 { name="runes"; version="0.1.0"; sha256="1s2vhwya434q70j4aq4qbds8wivscc5cyldr5pch7p41nqj0j7aw"; depends=[]; }; runexp = derive2 { name="runexp"; version="0.2.1"; sha256="0pcxwz0kpfrcsfalwlcwp81k3dyc9rqm9rba25xkp51bwz5scv64"; depends=[doParallel foreach]; }; @@ -17347,14 +17623,13 @@ in with self; { runstats = derive2 { name="runstats"; version="1.1.0"; sha256="0n9348af60j8a2mwgbafabspb4nm45ry92zlzmynja06zyx8lb2d"; depends=[fftwtools]; }; rusda = derive2 { name="rusda"; version="1.0.8"; sha256="0xx72jjf1pyixwpnvvgx5n2vc5gl46bam1caav043iqki68wb338"; depends=[foreach httr plyr RCurl stringr taxize testthat XML]; }; rusk = derive2 { name="rusk"; version="0.1.1"; sha256="0a6vbcnfzlfq9fmibiy0cwcfix65qhxq4f7wc7d53riga82s00lk"; depends=[dplyr ggforce ggplot2 reshape2 shiny tidyr]; }; - rusquant = derive2 { name="rusquant"; version="1.0.5"; sha256="0x9l5hy9jp41gks33g6ls9axvbi0z18vn07aa2xaxr4aj6yh1xbv"; depends=[base64enc data_table httr jose jsonlite quantmod rvest stringr XML xts]; }; + rusquant = derive2 { name="rusquant"; version="1.1.1"; sha256="02saxymlmjmbzczhn2ihyn09106005wi39f2q9dyasrzi7n6v6pk"; depends=[base64enc data_table httr jose jsonlite quantmod rvest stringr XML xts]; }; rust = derive2 { name="rust"; version="1.4.2"; sha256="1pp37h27pyjzcwabazyfmlgrma6x0k8hbq3ksfvlgphsk9hac93z"; depends=[Rcpp RcppArmadillo]; }; rutifier = derive2 { name="rutifier"; version="1.0.4"; sha256="045pr8apd105azs1glpwqrbamglqddxfpml9yrfrlaivz3fjd9l8"; depends=[R_utils]; }; - rutledge = derive2 { name="rutledge"; version="0.1.0"; sha256="04ili75fj8dxhhwmbzgb2mnak89zscdyfaxss7rsl0byjgr0h8zs"; depends=[magrittr tibble]; }; + rutledge = derive2 { name="rutledge"; version="0.1.1"; sha256="1f1hgss5spc3jw1j5636mgxhrkcqwkgb335aihliivpqix744hr3"; depends=[tibble]; }; ruv = derive2 { name="ruv"; version="0.9.7.1"; sha256="1n4q9mrp9f644spbns6bbnzmlabrg90hwkdfg3hnm3rxp9b4xid0"; depends=[ggplot2 gridExtra scales]; }; - rv = derive2 { name="rv"; version="2.3.5"; sha256="1rjbhlvd7cxn7yw001p859zl5ibxl4di03j1aadm4zycq1zyr6q7"; depends=[]; }; rvHPDT = derive2 { name="rvHPDT"; version="4.0"; sha256="0a6mzb714cvgwgam7429wzv0r28yl2aqhfsx7wjpw265ys8qyw1h"; depends=[gtools]; }; - rvMF = derive2 { name="rvMF"; version="0.0.8"; sha256="1386206s3i8a58fk3vsc7zg323hnmq5sc5p9yhcim6qbabsfnljc"; depends=[Bessel Rcpp Rfast scModels]; }; + rvMF = derive2 { name="rvMF"; version="0.1.0"; sha256="0mlmkax5f86zpr1r81xvzcq874i18smh9af19jdkb70skg92jafs"; depends=[Bessel Rcpp Rfast scModels]; }; rvalues = derive2 { name="rvalues"; version="0.7.1"; sha256="0vgizlm5g6mnzvwsprgg0wj0k2y3nc8zn1bqdaw58py92mqpvj1d"; depends=[]; }; rvcheck = derive2 { name="rvcheck"; version="0.2.1"; sha256="09khjklvzbafd7r55496by01a9g3y291d87hpy43w44dmz9fzn9a"; depends=[BiocManager yulab_utils]; }; rvec = derive2 { name="rvec"; version="0.0.6"; sha256="15wwpkhnzib5nnyv15mdv8avxrzwc57xrpk7xr6qx440ibsg60x9"; depends=[cli glue matrixStats rlang tibble tidyselect vctrs]; }; @@ -17365,6 +17640,7 @@ in with self; { rviewgraph = derive2 { name="rviewgraph"; version="1.4.2"; sha256="161fdvk1gn5mz15shkd2w0yv0y9bp5rzyrmg43yl7h75csfl7l8g"; depends=[rJava]; }; rvif = derive2 { name="rvif"; version="1.0"; sha256="0aqzh8n889avbjdf4244h4a5y5a6w9hxxgm15ygxvysrw5rjb37f"; depends=[multiColl]; }; rvinecopulib = derive2 { name="rvinecopulib"; version="0.6.3.1.1"; sha256="0cmzijh03mbl3b3x8gin3vzgc52yrxmai45dxw5a6zrfal3x15fz"; depends=[assertthat BH kde1d lattice Rcpp RcppEigen RcppThread wdm]; }; + rvisidata = derive2 { name="rvisidata"; version="1.0.0"; sha256="0y65g4lhgjpaqkap1g07dxiaax8rypbb50bg9r5akqy2x2p9sjrg"; depends=[]; }; rvkstat = derive2 { name="rvkstat"; version="3.2.0"; sha256="0nk6bx04jnm55k5323w1n4zg7qgds6c53fvdz329kqfsrmpj4wgq"; depends=[dplyr httr jsonlite lgr stringr tidyr]; }; rvmethod = derive2 { name="rvmethod"; version="0.1.2"; sha256="1g2d5pvz5s1sj2kalxaz7nb8874m4113ly809zbimngi1lhg8zi1"; depends=[assertthat locfit]; }; rwa = derive2 { name="rwa"; version="0.0.3"; sha256="11irb6ayr1a1rbmhc9zqwyb1vjfc0fq7imji0lfa30zplwgf1mqh"; depends=[dplyr ggplot2 magrittr tidyr]; }; @@ -17384,22 +17660,21 @@ in with self; { rwty = derive2 { name="rwty"; version="1.0.2"; sha256="0p0bpq5dk8vjqx8ry364xhaq3rgxa49planapggicg7by2mhaacc"; depends=[ape coda GGally ggdendro ggplot2 phangorn plyr reshape2 viridis]; }; rwunderground = derive2 { name="rwunderground"; version="0.1.8"; sha256="02p26gkicd5v511kb04p1h3wxj57r7j5vr97n3ibywc6ivz7nqxa"; depends=[countrycode dplyr httr lubridate tibble]; }; rxSeq = derive2 { name="rxSeq"; version="0.99.3"; sha256="0g0n2pzbssz61psghjp1vrlspgph4s39x1k1zhcz7ivdn5pjb2nx"; depends=[MASS numDeriv VGAM]; }; - rxode2 = derive2 { name="rxode2"; version="2.1.2"; sha256="1g9g36pjpmcsz3f5g7swwhq065x6cj5gaxwd2hgq3maqqxlhvlss"; depends=[backports BH checkmate cli data_table ggplot2 inline lotri magrittr memoise PreciseSums qs Rcpp RcppArmadillo rex rxode2et rxode2ll rxode2parse rxode2random sys]; }; - rxode2et = derive2 { name="rxode2et"; version="2.0.12"; sha256="07hjw31i2fczxi3hzpx6rbhg85sgzg7gln0qnmq9520fnsklixba"; depends=[checkmate cli crayon lotri magrittr Rcpp rxode2parse rxode2random]; }; + rxode2 = derive2 { name="rxode2"; version="2.1.3"; sha256="0r6j4wxkzxw4dabz2z1lssbw98mfk7sb64br01bmsqr1d19p5n1v"; depends=[backports BH checkmate cli data_table ggplot2 inline lotri magrittr memoise PreciseSums qs Rcpp RcppArmadillo rex rxode2et rxode2ll rxode2parse rxode2random sys]; }; + rxode2et = derive2 { name="rxode2et"; version="2.0.13"; sha256="1pprky6j5vzijichr7kzfavc8ly3k272xnzvwix60v77z9zn5kyw"; depends=[checkmate cli crayon lotri magrittr Rcpp rxode2parse rxode2random]; }; rxode2ll = derive2 { name="rxode2ll"; version="2.0.11"; sha256="0fj5lbs67g1adjywfnav88rsj0sy3lwwf4gyimdh89rbm1glrrs3"; depends=[BH checkmate Rcpp RcppEigen RcppParallel StanHeaders]; }; - rxode2parse = derive2 { name="rxode2parse"; version="2.0.18"; sha256="180af1lfvm8zqkdihvij8x25gid3zagjpg46455iy4hb05ms2byv"; depends=[BH checkmate crayon data_table digest dparser knitr qs Rcpp RcppEigen rex StanHeaders symengine]; }; - rxode2random = derive2 { name="rxode2random"; version="2.0.13"; sha256="0c6nwb7f61yb98zg7gzbyk2xzbr8k780l8ns444qc17a9ad74wqd"; depends=[BH checkmate lotri Rcpp RcppArmadillo rxode2parse sitmo]; }; + rxode2parse = derive2 { name="rxode2parse"; version="2.0.19"; sha256="01q3chhq7nl1jl50w623m1nik9jdrizpc4hi792ynsr27lsqlhcx"; depends=[BH checkmate crayon data_table digest dparser knitr qs Rcpp RcppEigen rex StanHeaders symengine]; }; + rxode2random = derive2 { name="rxode2random"; version="2.1.1"; sha256="1zrddjq1i2wfx6ai4wwp1l0vnyk5i19dcr7f2q3f66jhlj9fqp27"; depends=[BH checkmate lotri Rcpp RcppArmadillo rxode2parse sitmo]; }; rxylib = derive2 { name="rxylib"; version="0.2.12"; sha256="1drmizyvbhza6p5gdqn2ahkppa99z1xvc1w7s4mbxjh15x3c633g"; depends=[BH Rcpp]; }; ryandexdirect = derive2 { name="ryandexdirect"; version="3.6.2"; sha256="03k4z32wgc2rkmz4lj89s3w7w9ywwbdbkqm2nfapl5q45pz6wwzz"; depends=[bitops data_table dplyr httr jsonlite magrittr purrr readr stringr tidyr xml2]; }; rym = derive2 { name="rym"; version="1.0.6"; sha256="135h9lmyrpnkc4q5kdcpbr96glc0a9bah01sm4qakzdcb6zsxsh1"; depends=[httr purrr stringr]; }; - rytstat = derive2 { name="rytstat"; version="0.3.0"; sha256="1shsc54ss9120ngl59pnd6kqclfh2ilva97xdsx58a9c2kry2dmm"; depends=[cli dplyr gargle httr pbapply rlang snakecase stringr tidyr withr]; }; + rytstat = derive2 { name="rytstat"; version="0.3.2"; sha256="0fm5aa4dbr8g1zsmqsjasy1vkvpb4ss7nyl73rb7fn5zdlm6cvim"; depends=[cli dplyr gargle httr pbapply rlang snakecase stringr tidyr withr]; }; rzentra = derive2 { name="rzentra"; version="0.1.0"; sha256="1knp1616ck64wgf3r80s1nywdnljc1r9fjvgg531j0fxir04aqkl"; depends=[data_table dplyr httr jsonlite lubridate magrittr purrr]; }; - rzmq = derive2 { name="rzmq"; version="0.9.12"; sha256="0033kipyla0sic1sr6wldnq40q0l9865zdkb0lsb5zh50y036vrz"; depends=[]; }; + rzmq = derive2 { name="rzmq"; version="0.9.13"; sha256="1wb3nhgik436nq2518npy7z8c1nh0c6ck5a95csph2rsn91kaq4d"; depends=[]; }; s2 = derive2 { name="s2"; version="1.1.6"; sha256="0rm0jd5k5w725v1bnn6ix8vic40grdh61y6qdy8jy4lhg1mjx78x"; depends=[Rcpp wk]; }; s20x = derive2 { name="s20x"; version="3.1-40"; sha256="1b2bbkbkmr4d4bfihd87c3vwdfxb21hzaxhd6zqnwz1n0xg2zhb5"; depends=[]; }; s2dv = derive2 { name="s2dv"; version="2.0.0"; sha256="0lgkdb1gphqsggqnyrl1hlfx1x5zxbhb9msr6xyj4hhp03m16z9x"; depends=[abind bigmemory ClimProjDiags easyNCDF easyVerification mapproj maps multiApply NbClust ncdf4 plyr SpecsVerification]; }; - s2dverification = derive2 { name="s2dverification"; version="2.10.3"; sha256="10zqw7w8hm7cqbaxy6asflw0i8s5rmki2xhv3d51sm67vb7qn6f4"; depends=[abind bigmemory GEOmap geomapdata mapproj maps NbClust ncdf4 plyr SpecsVerification]; }; - s2net = derive2 { name="s2net"; version="1.0.4"; sha256="0wq3y96m2h85kw755rnmnzvxknk5s7ii0g7p0zd8ahcnppkdk6kl"; depends=[MASS Rcpp RcppArmadillo]; }; + s2net = derive2 { name="s2net"; version="1.0.7"; sha256="18n3zq4hd07ipba7n6qc0fhxbraam70kypzf17hiaqrsjcjpw58x"; depends=[MASS Rcpp RcppArmadillo]; }; s3 = derive2 { name="s3"; version="1.0.0"; sha256="1cb9xmi4fb0bi3vglbg3jk872nci015v1yxk3049482r92v6lnsn"; depends=[aws_signature cli digest dplyr fs glue httr prettyunits purrr]; }; s3_resourcer = derive2 { name="s3.resourcer"; version="1.1.1"; sha256="0njl93c1pxsg04fr74pnrpvx3z5m8nk2xv700l0jhbygshw8k5z2"; depends=[aws_s3 httr R6 resourcer sparklyr]; }; s3fs = derive2 { name="s3fs"; version="0.1.5"; sha256="08i8a1629b63b1ai3ngh59xwnh8vzmzpz1wvxhwylpk7igwwsbg0"; depends=[curl data_table fs future future_apply lgr paws_storage R6]; }; @@ -17422,6 +17697,7 @@ in with self; { saasCNV = derive2 { name="saasCNV"; version="0.3.4"; sha256="12h5vrl55sb4wmx0hzib5iax8p0q2qzk19h15r0asfkh9l7qz94l"; depends=[DNAcopy RANN]; }; sabre = derive2 { name="sabre"; version="0.4.3"; sha256="0vcfcsfc53022rglqxgf5p9b8d8lphyy161jmvlvb77qp959nbrh"; depends=[dplyr entropy raster rlang sf tibble tidyr]; }; sac = derive2 { name="sac"; version="1.0.2"; sha256="1yg133zm0db2lv0m62ij7c27bs4k3kbjic15dwrak534lk885sj2"; depends=[]; }; + sacRebleu = derive2 { name="sacRebleu"; version="0.1.3"; sha256="0piapn7srrfc4qmwkpjrsfyhz253pl69ppm3y9flqlffki5b5zx1"; depends=[checkmate Rcpp tok]; }; saccadr = derive2 { name="saccadr"; version="0.1.3"; sha256="0c51zbkh8b0xi0sshzq5agbijw6nprrb3r1k77wcfqsr2mazfwi5"; depends=[cluster dplyr magrittr Rcpp rlang signal tidyr]; }; sad = derive2 { name="sad"; version="0.1.3"; sha256="0wr4xdx68hrxaw5izy36gm10smk6s1gzrzwayhfp4lhvkn75qsww"; depends=[dualtrees emdist]; }; sadists = derive2 { name="sadists"; version="0.2.5"; sha256="0c7bmca6yyz5hca2ghr2zc6lmwi94cywz8gkpsakrnmk0f7680xi"; depends=[hypergeo orthopolynom PDQutils]; }; @@ -17439,17 +17715,17 @@ in with self; { saeHB_unit = derive2 { name="saeHB.unit"; version="0.1.0"; sha256="0z1p41aa398qgysm3yp7siz38any3z3rjw8hn4hrj9zxx9zn2lcy"; depends=[cli coda dplyr rjags]; }; saeME = derive2 { name="saeME"; version="1.3.1"; sha256="071f345gpm5qwsj6k7vm8jfm80lgzk5l1gyds3zcxy955gk288cs"; depends=[MASS]; }; saeMSPE = derive2 { name="saeMSPE"; version="1.2"; sha256="086nmcx14sjwnydka805il11lc02jv9l39kk9j1h2j5p9gz0b3gp"; depends=[Matrix Rcpp RcppArmadillo smallarea]; }; + saePseudo = derive2 { name="saePseudo"; version="0.1.0"; sha256="1zppb1k9rz13v0p3vgs42rhcbm93hp3xl7mavk2cxy9l36gnd40g"; depends=[dplyr sae]; }; saeRobust = derive2 { name="saeRobust"; version="0.5.0"; sha256="0rq4az5rzjljjswkdbcz7y5lyrnhyx9b20w81s4665iwrl3fcniw"; depends=[aoos assertthat ggplot2 magrittr MASS Matrix memoise modules pbapply Rcpp RcppArmadillo spdep]; }; saeSim = derive2 { name="saeSim"; version="0.11.0"; sha256="0s0zcls4j3cx7wbvi0l3q4c3b0f9x9i2wcqnz4gzwyqik6pcfaic"; depends=[dplyr functional ggplot2 MASS parallelMap spdep tibble]; }; - saeTrafo = derive2 { name="saeTrafo"; version="1.0.2"; sha256="1kdd70jq7dm3dfg801wy48fzwkw4xvw18l6sdfx1sfkj20s4nyna"; depends=[emdi ggplot2 gridExtra HLMdiag moments MuMIn nlme openxlsx parallelMap readODS reshape2 rlang sfsmisc stringr]; }; + saeTrafo = derive2 { name="saeTrafo"; version="1.0.4"; sha256="1sqmymazs3g1xlqvphbwmpvl5yhkmbmpcyc1mxqdxaj3yap44qwr"; depends=[emdi ggplot2 gridExtra HLMdiag moments nlme openxlsx parallelMap readODS reshape2 rlang sfsmisc stringr]; }; saebnocov = derive2 { name="saebnocov"; version="0.1.0"; sha256="0dxbicvmq13wh2xj820qw2ah3j005pqjynynhgkynfvm9nmymrvr"; depends=[descr dplyr rlang]; }; - saeczi = derive2 { name="saeczi"; version="0.1.1"; sha256="1rbxmjq8mdb3nscpnvan733n4qdi89zs5ddp295p5fj5vqpba65s"; depends=[dplyr furrr future lme4 progressr purrr Rcpp RcppEigen rlang]; }; + saeczi = derive2 { name="saeczi"; version="0.2.0"; sha256="02jsmmzaig5d8lr9avra3acy93klh7f88izxsf04gn0w855y37cv"; depends=[dplyr furrr future lme4 progressr purrr Rcpp RcppEigen rlang]; }; saeeb = derive2 { name="saeeb"; version="0.1.0"; sha256="04vjxmnqcgqcamgjd9qq1dbx0msm40mnn94jjy9pzvsj2gsbws39"; depends=[COUNT MASS]; }; saekernel = derive2 { name="saekernel"; version="0.1.1"; sha256="0zk124kkxrwr3bliy01d3ag4r0flnjg4z3lmm5wmq3w0r4gwgy4f"; depends=[]; }; saemix = derive2 { name="saemix"; version="3.3"; sha256="1xx6254sj6lyarkkdkl3lajflyh8c2y8261bl9a19d1457l1h8wv"; depends=[ggplot2 gridExtra MASS mclust npde rlang scales]; }; saens = derive2 { name="saens"; version="0.1.0"; sha256="1fmg7lcryc426hclrzhj26l8zaar0cc2j3vqxd752g86h4n0g6hz"; depends=[cli dplyr ggplot2 rlang tidyr]; }; - safedata = derive2 { name="safedata"; version="1.1.3"; sha256="127ciirz3sjq2qfnx5zrh2nwglign55if9gwplvr579m0jjysjf5"; depends=[chron curl httr igraph jsonlite readxl sf]; }; - safejoin = derive2 { name="safejoin"; version="0.1.0"; sha256="0qvra505g7cay3nhq6yqrddb7sw3kx50y8jhgvxi47rxdc3alzba"; depends=[dplyr glue]; }; + safejoin = derive2 { name="safejoin"; version="0.2.0"; sha256="19ja9nxgnh7xpsdaqy866qz6zf2mkfxinh757dmha1avr7bjhmfx"; depends=[dplyr glue lifecycle]; }; safer = derive2 { name="safer"; version="0.2.1"; sha256="1lmhaj9y0hi4ybxfkllxl99vsagcg73sy4kkcmlvn3bs69jky1r9"; depends=[assertthat base64enc sodium]; }; safestats = derive2 { name="safestats"; version="0.8.7"; sha256="1jxdnvmf6w8hgd5wcfjcmm796nchig1xizhngbzdgl85yi6nw1yy"; depends=[BiasedUrn boot dplyr hypergeo purrr rlang survival]; }; safetensors = derive2 { name="safetensors"; version="0.1.2"; sha256="0xvg5y2sd7gzcal0qqgxbx8vcvmy50jm0j2ajr8iw3wyy5qpyvkp"; depends=[cli jsonlite R6 rlang]; }; @@ -17461,7 +17737,7 @@ in with self; { salesforcer = derive2 { name="salesforcer"; version="1.0.1"; sha256="19z4q5k0k1c1s2piqjg0z6nrwabap016nbx3jpf51lvmh5lp8ycf"; depends=[anytime base64enc curl data_table dplyr httr jsonlite lifecycle lubridate mime purrr readr rlang rlist tibble vctrs XML xml2 zip]; }; salso = derive2 { name="salso"; version="0.3.35"; sha256="1jgslcn5lc34aj58kg1madbhf3v9n9ap70jv349rsr97p9vqi2bx"; depends=[]; }; salty = derive2 { name="salty"; version="0.1.0"; sha256="1dxq62yrkv416fy09l03slc7ci6mnwiyvjlsxhbqnj8yjy3kbhr6"; depends=[assertthat purrr stringr]; }; - samadb = derive2 { name="samadb"; version="0.2.6"; sha256="1jmk94zf42msgpm3i6d1b1njnpxax3hnbs8w957f6frk97idwp27"; depends=[collapse data_table DBI RMySQL writexl]; }; + samadb = derive2 { name="samadb"; version="0.3.0"; sha256="1qbjjnchx9h3wrhf23cpmwfaixdkm4jcpkgniz3h5ghrhqv32grr"; depends=[collapse data_table DBI RMySQL writexl]; }; sambia = derive2 { name="sambia"; version="0.1.0"; sha256="15yz5lrjav5bs8m52crg3l43xmi4gf7wydji76p181ssyg43z2ln"; depends=[dplyr e1071 FNN mvtnorm pROC ranger smotefamily]; }; samc = derive2 { name="samc"; version="3.2.1"; sha256="0i5k27699p28xzfbdk41ni45l5lp1k2zla5mf15x3livmnn8c3d4"; depends=[circular Matrix raster Rcpp RcppEigen RcppThread terra]; }; samon = derive2 { name="samon"; version="4.0.2"; sha256="1gv3kvl2jf6x6fcy52k61frcnsnz6xafyfhwq1n08pyzbynlsf08"; depends=[]; }; @@ -17479,7 +17755,8 @@ in with self; { samplingR = derive2 { name="samplingR"; version="1.0.1"; sha256="1ikmd7dvmrzc06vgpl8f7777pmds3vcfv74r9izlqhxyz39hgc9s"; depends=[dplyr]; }; samplingVarEst = derive2 { name="samplingVarEst"; version="1.5"; sha256="0h78dzb18cknmg6bnjfxaqfdayyghq6skxca1dj1idqh9p4igaqq"; depends=[]; }; samplingbook = derive2 { name="samplingbook"; version="1.2.4"; sha256="08fhzanzb725hlagm0225121gdgipkbfkixizwykggaimkz5j1ad"; depends=[pps sampling survey]; }; - samplingin = derive2 { name="samplingin"; version="1.0.7"; sha256="16yrd35q4f7bbjcipf13nrya6mcl6z1fhzi4z2rblaks4vxaqac2"; depends=[data_table dplyr magrittr rlang]; }; + samplingin = derive2 { name="samplingin"; version="1.1.0"; sha256="0a7c078vz4p5x5r29xsvab630pq3p7fwsn31qdcjdcl7n4475rhr"; depends=[data_table dplyr magrittr rlang sampling]; }; + samplrData = derive2 { name="samplrData"; version="1.0.0"; sha256="09gp4hh1kbf1lmvc10i679fxa7mwmcs3j16f80zc0c3cml1shlsq"; depends=[Rdpack]; }; sampsizeval = derive2 { name="sampsizeval"; version="1.0.0.0"; sha256="06mghabwqcc92hdvirm1gcna24hwll2gvm105ljkf5hgn0fa5xii"; depends=[dplyr plyr pracma sn]; }; samr = derive2 { name="samr"; version="3.0"; sha256="01km0f7qgm73x19vbvsxl083hs1dq4dj8qm5h64cxbf20b08my15"; depends=[GSA impute matrixStats openxlsx shiny shinyFiles]; }; sams = derive2 { name="sams"; version="0.4.3"; sha256="01rknjgxyvj3i12mqgnlr7m0wdvxp2ja0rx8hnb700vlxa1xdmhi"; depends=[]; }; @@ -17496,14 +17773,14 @@ in with self; { sanon = derive2 { name="sanon"; version="1.6"; sha256="0h3l1dzgkddvb3vzg7pcgwrgidphy73jys2h49v84nbfvqr6l85z"; depends=[]; }; sansa = derive2 { name="sansa"; version="0.0.1"; sha256="1p5qv94f62dxzkbl1jn1fx3vksyhqqa3w2ipqwiflaxlk7q9k5pq"; depends=[data_table FNN ggplot2]; }; santaR = derive2 { name="santaR"; version="1.2.4"; sha256="048zbx7fr71ibxzgsayzifzv8gka7dmdfsdyvmzssxvzyjcm4qwc"; depends=[bslib doParallel DT foreach ggplot2 gridExtra iterators pcaMethods plyr reshape2 shiny]; }; - santoku = derive2 { name="santoku"; version="0.10.0"; sha256="09zm2m3wcn3gzixmq8b9n1j11pca95sg4yw5zxm91cm7fd7f33cd"; depends=[assertthat glue lifecycle Rcpp rlang vctrs]; }; + santoku = derive2 { name="santoku"; version="1.0.0"; sha256="054bl8sgl0rcvymsqsg8br201snw6rlmac54mfb05a4hsd8y7vq4"; depends=[assertthat glue lifecycle Rcpp rlang vctrs]; }; sanzo = derive2 { name="sanzo"; version="0.1.0"; sha256="1fqsx2mgjsy6vjvsp2avi2i5cw7cjs2p53l1z6hb3bzid3067s87"; depends=[]; }; saotd = derive2 { name="saotd"; version="0.3.1"; sha256="1x3zpzhs11bgxa8zhjdwr7n9fi55glhrif43zblh55ih3cqpcfc1"; depends=[dplyr ggplot2 ggraph igraph ldatuning lubridate magrittr reshape2 rtweet scales stringr tidyr tidytext topicmodels widyr]; }; sapevom = derive2 { name="sapevom"; version="0.2.0"; sha256="0vq4rx85pdjc0wjxjf7wj8j5qs3cb20hwhlc2ypbgrlw7zkcp1z4"; depends=[]; }; sapfluxnetr = derive2 { name="sapfluxnetr"; version="0.1.4"; sha256="0x437nhv3g327apxnihr1wnp4mmzxn9pfk24shpj6a8amxphlzxd"; depends=[assertthat dplyr furrr ggplot2 glue lubridate magrittr purrr rlang stringr tibble tidyr]; }; saqgetr = derive2 { name="saqgetr"; version="0.2.21"; sha256="0s7mmc8gqx89697wkv369x6sp3d1wha4q2zkkwikh835i3alx4zd"; depends=[dplyr httr lubridate magrittr purrr readr stringr tidyr]; }; sara4r = derive2 { name="sara4r"; version="0.1.0"; sha256="1z112s7z9hcafmags76bazkyrmrrwykhf58g6z637w516nbgn314"; depends=[tcltk2 terra]; }; - sarima = derive2 { name="sarima"; version="0.9.2"; sha256="0zya0qpqvyiyq9lv8y2kcyd3v0hqw8n3chlqn2v24pyiq94h7kqg"; depends=[Formula lagged ltsa numDeriv PolynomF Rcpp RcppArmadillo Rdpack]; }; + sarima = derive2 { name="sarima"; version="0.9.3"; sha256="0x6wndy7mdmnliabrbs9qbpm7ibf2h7s3m4d90pasna6hw11yg3d"; depends=[Formula lagged ltsa numDeriv PolynomF Rcpp RcppArmadillo Rdpack]; }; saros = derive2 { name="saros"; version="1.0.4"; sha256="1b43hzvhagv43g7p2xqzk3ay3ylph41l4d69zm7hvbq6sdm69s27"; depends=[bcrypt cli clipr dplyr forcats fs ggiraph ggplot2 glue mschart officer rlang rstudioapi rvest stringi tidyr tidyselect vctrs yaml]; }; sarp_snowprofile = derive2 { name="sarp.snowprofile"; version="1.3.2"; sha256="1nrkifs6kq8kr3jmwi76d6jjbps1ijrnjxrslsyrpyvr2rj4p82h"; depends=[data_table xml2]; }; sarp_snowprofile_alignment = derive2 { name="sarp.snowprofile.alignment"; version="1.2.2"; sha256="1cjs31m3y9971m5zq9fpv4p2l6wjm5kb1wj6r42yj5p27yajv3vy"; depends=[data_table dtw sarp_snowprofile]; }; @@ -17511,11 +17788,11 @@ in with self; { sars = derive2 { name="sars"; version="1.3.6"; sha256="198dz3gbzm7iqa2p813anifzpjkna3blf4yzyy73j43h8w4k5v0b"; depends=[AICcmodavg cli crayon doParallel foreach nortest numDeriv]; }; sarsop = derive2 { name="sarsop"; version="0.6.14"; sha256="0y315gg3masbpvsf9zk0abj0mh0834h1yhmjg1fwwbqvygg64cjp"; depends=[BH digest Matrix processx xml2]; }; sas7bdat = derive2 { name="sas7bdat"; version="0.7"; sha256="0pwmngwmkybz64sqby86vzxq5wwfkh5hxnqncdv0fmp6w6x7jhjn"; depends=[]; }; - sasLM = derive2 { name="sasLM"; version="0.10.2"; sha256="1i8lzs9nxzr76chwdb8wsps96a73id7vy9xmlv3rdy70ck4cwwy7"; depends=[mvtnorm]; }; + sasLM = derive2 { name="sasLM"; version="0.10.4"; sha256="0saw3n0n1yw32ajnvp4g2gk4ikhgxc83rnyzqrndji39kc9qffkq"; depends=[mvtnorm]; }; sasfunclust = derive2 { name="sasfunclust"; version="1.0.0"; sha256="1ba7g3rxyq5h806na6bsdvh6mw6hydgcf3740qkfd4d5fx7m0mq4"; depends=[fda MASS Matrix matrixcalc mclust Rcpp RcppArmadillo]; }; sasr = derive2 { name="sasr"; version="0.1.2"; sha256="1cpmfclxphk5s3nr1znricm195j9xix5pw8jkyq3hhg0h7xirzi7"; depends=[checkmate reticulate]; }; sass = derive2 { name="sass"; version="0.4.9"; sha256="1lnl2xssz33vg7p6a8ij55hg6j1p1d3y2mq22pvf0r3rmnd08cz1"; depends=[fs htmltools R6 rappdirs rlang]; }; - sassy = derive2 { name="sassy"; version="1.2.3"; sha256="11h2pwg29nlpbzb0dys6xhbjvar2igwqbhh8x4n5spkiccn6l4cj"; depends=[common fmtr libr logr procs reporter]; }; + sassy = derive2 { name="sassy"; version="1.2.5"; sha256="1w2hgkwvwzvzmd1gw9x6y5zvxvmp704zk5jny6ppq44wavm7nl52"; depends=[common fmtr libr logr procs reporter]; }; satdad = derive2 { name="satdad"; version="1.1"; sha256="1ig7z0z4filq57sk9rc38pnx79j1lxm1sacl9hbi407y0pqx01k7"; depends=[BH graphicalExtremes igraph maps partitions Rcpp RcppArmadillo]; }; sate = derive2 { name="sate"; version="2.1.0"; sha256="19jd8z1343ajx27b14grjnvxxf38b008fzclv7rcpqqp717ajpnv"; depends=[ellipse MASS]; }; satellite = derive2 { name="satellite"; version="1.0.5"; sha256="1bd1f8mimx53dcy3fnlhjk7yam08jvr3lhh39zcb5c2yj0pkhk1y"; depends=[plyr raster Rcpp terra]; }; @@ -17523,10 +17800,11 @@ in with self; { satres = derive2 { name="satres"; version="1.1.1"; sha256="0651vv381b5j8zn9gngkqz7asbz3bwrrln57448j2w0qa1lfpq87"; depends=[sf snakecase terra]; }; saturnin = derive2 { name="saturnin"; version="1.1.1"; sha256="0cjp4h1s9ivn17v8ar48mxflaj9vgv92c8p9l2k5bc9yqx9mcs36"; depends=[Rcpp RcppEigen]; }; savonliquide = derive2 { name="savonliquide"; version="0.2.0"; sha256="1f1s2pzvpqrcb68fqk4ivpimwsphnjjx3b42jivw63y7q7ak4azh"; depends=[crayon glue htmltools httr]; }; - savvyr = derive2 { name="savvyr"; version="0.1.0"; sha256="01wl5a0s223rwqdysknjqzaiahzpi4mkgfhz3c8sy8ck0k32wbgf"; depends=[checkmate etm Rdpack]; }; + savvyr = derive2 { name="savvyr"; version="0.1.1"; sha256="08lrhb4nc0hcbqjdv1ar31l80gbfgxjivpc5k0farcldksybxjsg"; depends=[checkmate etm Rdpack]; }; sawnuti = derive2 { name="sawnuti"; version="0.1.1"; sha256="07abg9gqm59iz05jly47h9jnf8majnhjqss2ybjpa9mx1aclm50b"; depends=[]; }; saws = derive2 { name="saws"; version="0.9-7.0"; sha256="11mnh0m627y3w2yzsb17z5sk3v584vny36m32bxi8niscrfv9im8"; depends=[gee]; }; sazedR = derive2 { name="sazedR"; version="2.0.2"; sha256="0v8ap9ivwj5h4w2iwhww16v1jm6jpkkphvkh5vq06mv1a72p0inz"; depends=[bspec dplyr fftwtools pracma zoo]; }; + sbd = derive2 { name="sbd"; version="0.1.0"; sha256="0wf46p330l2lx6j9w4600q27n4jzhpzb2kw056654fz2ggd8x6kn"; depends=[bbmle dplyr MASS]; }; sbde = derive2 { name="sbde"; version="1.0-1"; sha256="0npsf2s3j87j6gxjbpf46qndazjm2al43pxbhnx0jd6gd8fmr631"; depends=[coda extremefit]; }; sbfc = derive2 { name="sbfc"; version="1.0.3"; sha256="0yfbxp3b9j2xjpd1xffkjl2bfxixc7hhzfiwicd9lyi5w2kfwavf"; depends=[DiagrammeR discretization Matrix Rcpp RcppArmadillo]; }; sbgcop = derive2 { name="sbgcop"; version="0.980"; sha256="0vmg8b4462qghlyx6hq0raf9xqvygzgwi5y0cbqcljhmbmqjrwxs"; depends=[]; }; @@ -17535,19 +17813,22 @@ in with self; { sbmSDP = derive2 { name="sbmSDP"; version="0.2"; sha256="1sl46lqi6w0s7ghv4bywhic56cm2vib3kawprga760m6igargx4y"; depends=[Rcpp RcppArmadillo]; }; sbo = derive2 { name="sbo"; version="0.5.0"; sha256="00pnvpcl6441gf8npf6b6cvzxh0kq4qbfxggjiqdny6lq2nl0d47"; depends=[dplyr Rcpp rlang testthat tidyr]; }; sboost = derive2 { name="sboost"; version="0.1.2"; sha256="1vh3hk15chkyrkpnj4i40542bck9ny45g424bncxdxl9fgxc4nhk"; depends=[dplyr Rcpp rlang]; }; + sbrl = derive2 { name="sbrl"; version="1.4"; sha256="0sr57zfd75ywgv4az0y7jiacalywf36z3gmsjdgmw0adzaxxdcsg"; depends=[arules Rcpp]; }; sbtools = derive2 { name="sbtools"; version="1.3.2"; sha256="14yjml5d34jkyw7rsc02zpb4wy9w30sxqzpdjk02znxpm9baxsj1"; depends=[cli curl httr jsonlite keyring mime]; }; sbw = derive2 { name="sbw"; version="1.1.5"; sha256="10ks912f4xiy0i484vf24w5zz9n7kxlcy77ikz95p8vr5zlqkvgc"; depends=[MASS Matrix quadprog slam spatstat_geom]; }; sc2sc = derive2 { name="sc2sc"; version="0.0.1-12"; sha256="0cdfx47vlcqqbl6d75zr91x8j4ayar7wdk5mkdilgw0izcxwscjf"; depends=[]; }; scAnnotate = derive2 { name="scAnnotate"; version="0.3"; sha256="02hrfs5ci2ii3hr4d4ks5bj80n5ajdnx71m6swmdciiy72sdm1lc"; depends=[glmnet harmony Seurat SeuratObject]; }; - scBSP = derive2 { name="scBSP"; version="0.0.1"; sha256="14c150xn0zmdra8ycqcv5dl6s904zbbn8glpjy24y7z0g75vq9lf"; depends=[fitdistrplus Matrix RANN spam sparseMatrixStats]; }; + scBSP = derive2 { name="scBSP"; version="1.0.0"; sha256="0cabj2hizmnadq5vijaip4d1wcsycwy5bdpgjwivzgqkhy9r5ss7"; depends=[fitdistrplus Matrix RANN spam sparseMatrixStats]; }; scBio = derive2 { name="scBio"; version="0.1.6"; sha256="1bpizxm9fbxd4sfapi1ayfg5csacb4dvqbvappd79jkq4mrsk12q"; depends=[doSNOW fields foreach LiblineaR limma raster sp]; }; + scCAN = derive2 { name="scCAN"; version="1.0.5"; sha256="0iypyh34583wmp4hkvhhkyz72aw8y58ynmx1iml82iwvivvwjk1s"; depends=[FNN purrr scDHA]; }; scCATCH = derive2 { name="scCATCH"; version="3.2.2"; sha256="0skd6gsm30bsxr7qi63y890qrx7zq8fvp0ik8jrpwfnsvfgyzx8v"; depends=[Matrix progress reshape2]; }; scCustomize = derive2 { name="scCustomize"; version="2.1.2"; sha256="150h8aj9qyg7v9yh5mhkr6nbf05ia91l5v9cqy58ipg6bwa9lmib"; depends=[circlize cli cowplot data_table dplyr forcats ggbeeswarm ggplot2 ggprism ggrastr ggrepel glue janitor lifecycle magrittr Matrix paletteer patchwork pbapply purrr rlang scales scattermore Seurat SeuratObject stringi stringr tibble tidyr]; }; - scDHA = derive2 { name="scDHA"; version="1.2.1"; sha256="075prhak80d6v9hcxsmn3f1mlc4liahh0fdpn8n6hs3ghczrk5cl"; depends=[cluster coro doParallel foreach igraph Matrix matrixStats Rcpp RcppAnnoy RcppArmadillo RcppParallel RhpcBLASctl torch uwot]; }; + scDECO = derive2 { name="scDECO"; version="0.1.0"; sha256="0gm7xlkv3rr6mzwbgggyaby75ia1avrflasrsszniph13bcndb9g"; depends=[MASS msm rjags]; }; + scDHA = derive2 { name="scDHA"; version="1.2.2"; sha256="1l9i5r7z4n387mrfmq43md2a0wrhvshrggb4nc3varjyq3drh3yd"; depends=[cluster coro doParallel foreach igraph Matrix matrixStats Rcpp RcppAnnoy RcppArmadillo RcppParallel RhpcBLASctl torch uwot]; }; scDIFtest = derive2 { name="scDIFtest"; version="0.1.1"; sha256="1hq68g7zf7372cach2qfc7l1l8gh5aqkp66k0cxjnrhmvvb1qcax"; depends=[mirt sandwich strucchange zoo]; }; scDiffCom = derive2 { name="scDiffCom"; version="1.0.0"; sha256="17scb8hhx2d67cbhzxd0l2hzy4sj22x5j9rvc71ba2d958wk4ysa"; depends=[data_table DelayedArray future future_apply magrittr Seurat]; }; scGOclust = derive2 { name="scGOclust"; version="0.2.1"; sha256="0jbmjrc5xmxvkc6q93blbryqvyxcy6ia6bmca03vq05l6isybal6"; depends=[biomaRt dplyr limma magrittr Matrix networkD3 Seurat slanter tibble tidyr]; }; - scGate = derive2 { name="scGate"; version="1.6.0"; sha256="0h12d36zjc6fvxbhkxrzbpvw49z9fgyn1jc941q70ajw1yqi2hhh"; depends=[BiocParallel dplyr ggplot2 ggridges patchwork reshape2 Seurat UCell]; }; + scGate = derive2 { name="scGate"; version="1.6.2"; sha256="0zlbrvr6lxcihspfqgpvv5kyrzqqpy3451j0kpnqc0n93bbs4cqk"; depends=[BiocParallel dplyr ggplot2 ggridges patchwork reshape2 Seurat UCell]; }; scINSIGHT = derive2 { name="scINSIGHT"; version="0.1.4"; sha256="1zkm2n19px3yh3y2z1g5l84ym36ar31i96i54mm7wa0ki179swap"; depends=[igraph RANN Rcpp RcppArmadillo stringr]; }; scISR = derive2 { name="scISR"; version="0.1.1"; sha256="0m4sgbyc05qy1zklw45zj4w4wx0fhiwqr90fc3gpkqq7xkd7ihbw"; depends=[cluster entropy irlba markdown matrixStats PINSPlus]; }; scITD = derive2 { name="scITD"; version="1.0.4"; sha256="0xcx8bvl2w2qa4c68w5hvfx9412qvscjvj8d6hp4q62z58xqy1f8"; depends=[circlize ComplexHeatmap dplyr edgeR fgsea ggplot2 ggpubr ica Matrix mgcv msigdbr NMF RColorBrewer Rcpp RcppArmadillo RcppProgress reshape2 Rmisc rTensor sccore sva]; }; @@ -17555,7 +17836,7 @@ in with self; { scMappR = derive2 { name="scMappR"; version="1.0.11"; sha256="0a2jm2a10lawqrlcglaz31gx3kbvjz19f4ynhllkj0px61awxjah"; depends=[ADAPTS downloader ggplot2 gProfileR gprofiler2 GSVA limSolve pbapply pcaMethods pheatmap reshape Seurat]; }; scModels = derive2 { name="scModels"; version="1.0.4"; sha256="01minq4b0pdjlh2r56lvr2ab6r7sp7l9sjz8a9hmx5xmizmygmvr"; depends=[gamlss_dist Rcpp]; }; scOntoMatch = derive2 { name="scOntoMatch"; version="0.1.1"; sha256="1x08qm492yjkbi0srbx6l2z92cd7740iajrvv34hzfdbgjvx289s"; depends=[ontologyIndex ontologyPlot purrr]; }; - scPloidy = derive2 { name="scPloidy"; version="0.3.0"; sha256="0wbrpr6zwmhihbqsa5f4mfv05vx7v53bhgr4cx88k0p5jgzb6fs5"; depends=[dplyr GenomicRanges magrittr matrixStats mixtools rlang Rsamtools]; }; + scPloidy = derive2 { name="scPloidy"; version="0.6.2"; sha256="0p8rn2c58601yjkampgw360w6r8sbwg0rk007jnvkayfad5xhdvd"; depends=[dplyr GenomicRanges magrittr MASS matrixStats mixtools nimble rlang Rsamtools tibble tidyr]; }; scRNAstat = derive2 { name="scRNAstat"; version="0.1.1"; sha256="0yv5np7jafmygg77bwisrha5y2rdb1va906ngzs4zc8mvxr0dvlm"; depends=[clustree dplyr ggplot2 magrittr Matrix patchwork Seurat stringr]; }; scRNAtools = derive2 { name="scRNAtools"; version="1.0"; sha256="0x0lniqhq6q87y08kkkyvmk1g5b8i73hm3h86ba8rcv0v0n7ap9a"; depends=[ALL ConsensusClusterPlus corrplot edgeR foreach ggplot2 ggthemes Hmisc igraph lattice limma PerformanceAnalytics plyr reshape2 Rmisc Rtsne scatterplot3d survival TPEA]; }; scROSHI = derive2 { name="scROSHI"; version="1.0.0.0"; sha256="15mgbgb21wz1gnkw6mxkvckxj345cxi4w5hzwgxfqjvxq9wx6bik"; depends=[limma S4Vectors SingleCellExperiment SummarizedExperiment uwot]; }; @@ -17585,7 +17866,7 @@ in with self; { scatterD3 = derive2 { name="scatterD3"; version="1.0.1"; sha256="187jq1y5va5npsmpkfyi6mhgynq956590q4z8v1ibadsrcldw34m"; depends=[digest ellipse htmlwidgets]; }; scatterPlotMatrix = derive2 { name="scatterPlotMatrix"; version="0.2.0"; sha256="0jnahr5hxcbs742h4wr0r6yz8qgfli8xqmxwl29cbr32ipkwjmfg"; depends=[htmlwidgets]; }; scattermore = derive2 { name="scattermore"; version="1.2"; sha256="1l820rc4ncmqd5sacdc420xf6r5dh34sbhgzzgq7a4yx1dxshd2m"; depends=[ggplot2 scales]; }; - scatterpie = derive2 { name="scatterpie"; version="0.2.1"; sha256="0wfrckyvy4zw34qdvgg1gwqfdi1xhs63v3gfwa4akm7ifd1canlb"; depends=[dplyr ggforce ggfun ggplot2 rlang tidyr]; }; + scatterpie = derive2 { name="scatterpie"; version="0.2.3"; sha256="0iv4i775s22j3wg6mhsdx5d9zdb23v4fanfnznp2jiwkzxr10kvh"; depends=[dplyr ggforce ggfun ggplot2 rlang tidyr]; }; scatterplot3d = derive2 { name="scatterplot3d"; version="0.3-44"; sha256="1hkfislhzx05y5qqa7pvrils3qf9rhxbf37lkpsjbn9yihs0i70w"; depends=[]; }; scbursts = derive2 { name="scbursts"; version="1.6"; sha256="09yxnq6m35xmp0priavjnh0bdcwkr5hhy7j33cz13xwkrd1cgw5j"; depends=[readxl tibble]; }; sccca = derive2 { name="sccca"; version="0.1.1"; sha256="193d6015zchnmky0kic0msdw040ykvw3isxpzw5ccmg9dqr7j1xp"; depends=[dplyr HGNChelper openxlsx plyr scales Seurat]; }; @@ -17594,10 +17875,11 @@ in with self; { sccr = derive2 { name="sccr"; version="2.1"; sha256="0cjlzv92b5qrs43d3ry33zcggiqvsqaf8wq4k19ws9lvgh59b62v"; depends=[dplyr]; }; scdensity = derive2 { name="scdensity"; version="1.0.2"; sha256="173xm3bf8vxl30zk4n451al7m003byg9q4d1l1pfyfa4xnv8qdg9"; depends=[lpSolve quadprog]; }; scdhlm = derive2 { name="scdhlm"; version="0.7.3"; sha256="03bfn02x5gfbp7fd0fhcvpm9pf1h71kz1lcd0jkmddqmbj7v2i48"; depends=[dplyr lmeInfo magrittr nlme readxl rlang tidyselect]; }; + scdtb = derive2 { name="scdtb"; version="0.1.0"; sha256="0f79lrdrfn064gsgjpj9mr4sx2wyc5z2d6kkz42kb67rqpk23ibl"; depends=[broom_mixed DT ggplot2 mmcards nlme shiny shinythemes]; }; scellpam = derive2 { name="scellpam"; version="1.4.5"; sha256="0sgwqpmjwnwvs8s3l4x264kndjsh3k7h5mpxyl0za9s4na3y6s9j"; depends=[cluster memuse Rcpp]; }; scenes = derive2 { name="scenes"; version="0.1.0"; sha256="068x0f9j9apdrv07m4facxxs60axv43q57laypfavxsns3r4dk30"; depends=[cli cookies glue purrr rlang shiny]; }; - scfetch = derive2 { name="scfetch"; version="0.5.0"; sha256="0qyixanc72vang1zsr6v9yfv2j911iniiylw3fcxvykvfxp9zhmv"; depends=[Biobase curl data_table dplyr GEOquery httr jsonlite LoomExperiment magrittr Matrix openxlsx pbapply purrr reticulate rlang rPanglaoDB scater Seurat SingleCellExperiment SummarizedExperiment tibble tidyr]; }; scgwr = derive2 { name="scgwr"; version="0.1.2-21"; sha256="15pwasxkwirr2wwf8w02cy8zx0bqavzyfixjz3m37c1llrhddpka"; depends=[dplyr FNN optimParallel sp spData]; }; + sched = derive2 { name="sched"; version="1.0.1"; sha256="0cbbchax694aqbi12hxnssmfk8x56k5wdzkshbzanwjn2ivvr1rb"; depends=[chk fscache lgr openssl R6 RCurl]; }; schemr = derive2 { name="schemr"; version="0.2.0"; sha256="192dk2b69wlwwkqrkk1n05q8hsn6djxhscjizj3amj4b701xw612"; depends=[apcluster dplyr magrittr OpenImageR purrr stringr]; }; schoRsch = derive2 { name="schoRsch"; version="1.10"; sha256="0bf4lahfzi6dchqfnykh4saiagcka12h82d9mvd1ddv5phmbyi10"; depends=[]; }; schoenberg = derive2 { name="schoenberg"; version="2.0.3"; sha256="1d6pflj7kafcx4xwcqyxgvxgygnf51zk9b0a28fiz05gxnb4bhp6"; depends=[crayon]; }; @@ -17610,22 +17892,22 @@ in with self; { scico = derive2 { name="scico"; version="1.5.0"; sha256="1c6905y62s03kiah8ykhkag275pn06ihk5szldib2621ysrj2wb4"; depends=[scales]; }; scicomptools = derive2 { name="scicomptools"; version="1.0.0"; sha256="193byqr8sjb0hk1k4qj26pnqr5dgqfsxn47ckddgcvzk6ybd6cpl"; depends=[data_tree dplyr ggplot2 ggwordcloud gitcreds googledrive magrittr purrr readxl SemNetCleaner stringr tibble tidyr tidytext tidyxl]; }; scidesignR = derive2 { name="scidesignR"; version="1.0.0"; sha256="0krr7kn3l4c0dyn9ln3dz0h9ivr21dnrlmncpxiv560wqxnwi7z0"; depends=[]; }; - scientific = derive2 { name="scientific"; version="2024.1"; sha256="0krdp2xvhim9kv0fv65lbwy88p76rxhcfqwkh0nfjsspvw5l01lj"; depends=[htmltools knitr rmarkdown xfun]; }; + scientific = derive2 { name="scientific"; version="2024.2"; sha256="04pnc8fnc7ijvagp4mxfhg6kkrsczcc1a9j6m72sbyavv0k4dcin"; depends=[htmltools knitr rmarkdown xfun]; }; scientoText = derive2 { name="scientoText"; version="0.1"; sha256="0f18hg9s50lbbgl0fqjv45yhynpnsxj8wwm07g126snzr68gbd21"; depends=[stringr tm]; }; scifigure = derive2 { name="scifigure"; version="0.2"; sha256="1zc88r1lnb0cws130hq4rjc34rrp6zkmi8yhkwsm3vkznbhi4iba"; depends=[]; }; + scimo = derive2 { name="scimo"; version="0.0.2"; sha256="1fvljxn6m01wv4hmljcrki2wzbc0nlr3zrbyw80jbzw3p55vqgls"; depends=[dplyr generics magrittr recipes rlang tibble tidyr]; }; sciplot = derive2 { name="sciplot"; version="1.2-0"; sha256="097zcgjsv54f6wd8fjwh2xb406j6yrw94v9pcxa0zln1q7fs93vk"; depends=[]; }; scipub = derive2 { name="scipub"; version="1.2.3"; sha256="1491xdlxfqh1h178lrl01b9f4wwdgxaid3dxippyf3b1wxb1gqcf"; depends=[dplyr forcats gghalves ggplot2 purrr stringr tibble tidyr tidyselect]; }; scistreer = derive2 { name="scistreer"; version="1.2.0"; sha256="03nd4p7ik66v09yv18c0z1bvdnkr5m0axk78yapd2ri80ihmyi3c"; depends=[ape dplyr ggplot2 ggtree igraph parallelDist patchwork phangorn Rcpp RcppArmadillo RcppParallel reshape2 RhpcBLASctl stringr tidygraph]; }; - scitb = derive2 { name="scitb"; version="0.1.7"; sha256="1j62axyd26i6mzyhvcqlfksm225f4zhhxf1spyb68vdzvh4zg1hr"; depends=[ggplot2 MASS nortest reshape2 stringi]; }; + scitb = derive2 { name="scitb"; version="0.1.8"; sha256="1dkp4ch2n3j09b49pp0wsnx7pd9c3007kjm4jm72mpk1z17w5c9f"; depends=[ggplot2 MASS nortest reshape2 stringi]; }; sclr = derive2 { name="sclr"; version="0.3.1"; sha256="10pihx35889w509ijbyq5hzslk9n7kakjnfscg7p0dq198nbpyca"; depends=[broom dplyr purrr rlang tibble]; }; scoper = derive2 { name="scoper"; version="1.3.0"; sha256="0y0bqdxr4g929paddrgs8qqxzp0pwsc62kxl6lbzp4l2xmg3j2j2"; depends=[alakazam data_table doParallel dplyr foreach ggplot2 Rcpp rlang scales shazam stringi tidyr]; }; score = derive2 { name="score"; version="1.0.2"; sha256="1p289k1vmc7qg70rv15x05dyb92r7s6315whr1ibi40sqln62a5s"; depends=[msm]; }; - scorecard = derive2 { name="scorecard"; version="0.4.3"; sha256="105xqhipd1vlmm23frjq3qjsd0k6q7cxzakrvw0s2r1v8m4iqagv"; depends=[cli data_table doParallel foreach ggplot2 gridExtra openxlsx stringi xefun xml2]; }; + scorecard = derive2 { name="scorecard"; version="0.4.4"; sha256="0aql9rfvq1fhlq13vj5dmz37nd31c1rrm808zh8mzx6425vx72d1"; depends=[cli data_table doParallel foreach ggplot2 gridExtra openxlsx stringi xefun xml2]; }; scorecardModelUtils = derive2 { name="scorecardModelUtils"; version="0.0.1.0"; sha256="09znaxrv14m58hsk5pac458xbpcsidc6ygcsw4q9j0p4yd80qbvl"; depends=[car e1071 gbm ggplot2 partykit randomForest reshape2 sqldf stringr]; }; scorepeak = derive2 { name="scorepeak"; version="0.1.2"; sha256="1g9n7kjqb9qk5b7hw8ysrc069w9dzc4z29ay6z1kbm0v4kkzp7bi"; depends=[checkmate Rcpp]; }; scoring = derive2 { name="scoring"; version="0.6"; sha256="114jlpbnm15fdan5lr40adxdzwajy3yhdw6dm4kvkvky6qhcx7q5"; depends=[]; }; scoringRules = derive2 { name="scoringRules"; version="1.1.1"; sha256="1qy521jhr5mj7999ncz27f3ggld2rqvgy3y3wznk23772xpgjgrr"; depends=[knitr MASS Rcpp RcppArmadillo]; }; - scoringTools = derive2 { name="scoringTools"; version="0.1.3"; sha256="00bai8pm1wmal2dsqsyq9nrpkmrxc8bwccqp3gvf18b5s4s46k2r"; depends=[discretization dplyr magrittr sqldf]; }; scoringfunctions = derive2 { name="scoringfunctions"; version="0.0.6"; sha256="05bxqj8pq8halwljsy89l2p8hq8gghvivyhk1078w6yrrn8w18lq"; depends=[]; }; scoringutils = derive2 { name="scoringutils"; version="1.2.2"; sha256="1ylw7ql5ayfn6fcxnmmmr3zpvczax6mhmis28r03kwm8val5q233"; depends=[data_table ggdist ggplot2 lifecycle rlang scoringRules]; }; scout = derive2 { name="scout"; version="1.0.4"; sha256="0vr497g7g1xhf75cwjbjsns2fvdzy86iibbf5w0g2xylw82s4lh2"; depends=[glasso]; }; @@ -17638,7 +17920,7 @@ in with self; { scraEP = derive2 { name="scraEP"; version="1.2"; sha256="1qkfd4bp3sd3xrh9bdaqwmmvx7f9rvjcch6hi2p387ky04ywwqn4"; depends=[data_table rvest XML xml2]; }; scrapeR = derive2 { name="scrapeR"; version="0.1.8"; sha256="1hrxlj3x05vksa7pj8qkgyrc50l1b3d006nlzn174nn9ywhw6ypg"; depends=[httr magrittr rvest stringr]; }; scrappy = derive2 { name="scrappy"; version="0.0.1"; sha256="0dckq2pdqabnv5cinfqgbrjxp55x4z81lp8xh4yhyb2cnz9gdsqy"; depends=[magrittr rvest xml2]; }; - screenshot = derive2 { name="screenshot"; version="0.9.0"; sha256="14mkm5nsnyxvfzlq2gs9m88xgsvqwjra2j9ax1fx6wya970a1skd"; depends=[dplyr fs imager magrittr purrr rlang tibble]; }; + screenshot = derive2 { name="screenshot"; version="0.9.1"; sha256="16b1dzagy92jk1y1dymq6r2yzri3lynaj9a2bjqqjn0bh21aqsxr"; depends=[dplyr fs imager purrr rlang stringr tibble]; }; scribe = derive2 { name="scribe"; version="0.3.0"; sha256="02gwv7c107vaphkpr3giz2lqbaabk32fg6yf6zi0sirkp8dph93d"; depends=[]; }; scrime = derive2 { name="scrime"; version="1.3.5"; sha256="0y2mh9fsffjf3i15bafpasa17z99c1s75r8g6h4hgcwfgpjx75sx"; depends=[]; }; script = derive2 { name="script"; version="0.1.1"; sha256="1ba0mr77g4v4nv7yfs5yaj7x8yqrl3q8a1yia105pclgwq9ybs8i"; depends=[rstudioapi]; }; @@ -17668,43 +17950,42 @@ in with self; { sdcTable = derive2 { name="sdcTable"; version="0.32.6"; sha256="15jjc25zmxlhh6jvf1ml9q2ngf3blr6c1rarfsx993i4lbb6lg12"; depends=[data_table glpkAPI knitr Matrix progress Rcpp Rglpk rlang sdcHierarchies slam SSBtools stringr]; }; sde = derive2 { name="sde"; version="2.0.18"; sha256="1rk9wqaam21fipsinag3ychfkl6p7fpgbamr0119v8gjgskajxl8"; depends=[fda MASS zoo]; }; sdetorus = derive2 { name="sdetorus"; version="0.1.10"; sha256="09y23s5pxrhfv2l4q08vi8rf1nwainyy7dm0aij10sfwr86k0brn"; depends=[mvtnorm Rcpp RcppArmadillo]; }; - sdm = derive2 { name="sdm"; version="1.2-32"; sha256="124j571lfr0nhycl4p1k0pl8ylh2cbigf6qs5az4zj29mqarspz9"; depends=[raster sp terra]; }; - sdmTMB = derive2 { name="sdmTMB"; version="0.4.3"; sha256="0qfnf3mcx80rrpzpmnn9c6n808s92ixhnwdzvf22060rfy3b7vav"; depends=[assertthat cli clisymbols fishMod fmesher generics lifecycle lme4 Matrix mgcv mvtnorm nlme RcppEigen rlang TMB]; }; + sdm = derive2 { name="sdm"; version="1.2-40"; sha256="1mcalw96mpylgi9yalm0pxxcmv9724vaylgkanmx2cbnsjracq2z"; depends=[raster sp terra]; }; + sdmTMB = derive2 { name="sdmTMB"; version="0.6.0"; sha256="0v2kmyppax5f1g1jji7l2m6v49kxj65r81giv84hnkwmcqdzsic8"; depends=[assertthat cli clisymbols fishMod fmesher generics lifecycle lme4 Matrix mgcv mvtnorm nlme RcppEigen rlang TMB]; }; sdmpredictors = derive2 { name="sdmpredictors"; version="0.2.15"; sha256="19znyvz98b3ykwqllzs2sjrw4sd6pd90130ws5d739xgpgsj1zwv"; depends=[R_utils raster terra]; }; sdmvspecies = derive2 { name="sdmvspecies"; version="0.3.2"; sha256="19avkag13ij1k65vqhmvcy8j50j8vrgw4mjc49x8i63w3d4z1wxh"; depends=[psych raster]; }; sdpdth = derive2 { name="sdpdth"; version="0.2"; sha256="1yn8fsjxpbagargf3mv0p23vsgnl64dxfkggrzvfp0ylxsx8nnvc"; depends=[Matrix matrixcalc rCMA Rcpp RcppArmadillo rJava]; }; sdprisk = derive2 { name="sdprisk"; version="1.1-6"; sha256="061x78irryc5phd8bv9cs2mfgiajgwmr85ryp1r47anadydb2haa"; depends=[numDeriv PolynomF rootSolve]; }; sdpt3r = derive2 { name="sdpt3r"; version="0.3"; sha256="02qv889mkzcilxzszzqcqgn9z5zmki0093mdriradbl1y8a27bp5"; depends=[Matrix]; }; + sdrt = derive2 { name="sdrt"; version="1.0.0"; sha256="1kiq73m1wzqa8d0542nhm2bh7rc0bib0jnrwccawjyxmhm4jix73"; depends=[pracma psych tseries]; }; sdtmval = derive2 { name="sdtmval"; version="0.4.1"; sha256="1alwjknkgbabmivn1wrrbd0wyrs0hxpvx47ibdn7zl7ksfbhlsld"; depends=[dplyr glue haven knitr lubridate magrittr purrr readxl rlang stringr tidyr tidyselect]; }; sdwd = derive2 { name="sdwd"; version="1.0.5"; sha256="14x5hjdbkr5lsh8x3wninxg88acqh6q50famf6qjlfm7727rdysc"; depends=[Matrix]; }; seacarb = derive2 { name="seacarb"; version="3.3.3"; sha256="1xrwvkal60dkj4i6h27dskbliizkz6q476s06627asjacy8vdls3"; depends=[gsw oce SolveSAPHE]; }; sealasso = derive2 { name="sealasso"; version="0.1-3"; sha256="0j43my9mj73ada3bzzxazgwcahm2bhzbmqc128xara46gxvwrbzz"; depends=[lars]; }; - searchConsoleR = derive2 { name="searchConsoleR"; version="0.4.0"; sha256="1ffg5359pbwylw265wbahwl3hy1b0qqv4al71v5r8lgfircibn0j"; depends=[googleAuthR stringr]; }; searcher = derive2 { name="searcher"; version="0.0.7"; sha256="09h2jzm7y5c79z8an2nm392xmcn2ay7brcch7h1a7h9dbaakf1fb"; depends=[]; }; seas = derive2 { name="seas"; version="0.6-0"; sha256="0cr4lsbd599gzjzc6px7hkm3np34zh6sjzgzamlp4mdrphpvlvn7"; depends=[MASS]; }; season = derive2 { name="season"; version="0.3.15"; sha256="0f63ichlnj49g0ni9560avr4415iyj5061pixkjmqj83y7bbsz22"; depends=[ggplot2 MASS survival]; }; seasonal = derive2 { name="seasonal"; version="1.9.0"; sha256="0kpmqix7lxlsnhacrhk5aa9gvzng3fg024ngpk5apmhai7m2bp20"; depends=[x13binary]; }; - seasonalclumped = derive2 { name="seasonalclumped"; version="0.3.2"; sha256="0a9ryds9l00dw6pr9s6r6fzrby53zz63idjywh127a4ga48jwnq3"; depends=[ggplot2 gridExtra magrittr TTR]; }; seasonalityPlot = derive2 { name="seasonalityPlot"; version="1.2.1"; sha256="03gfbpzy97kjw1mxm9xqh384ilyap2nqn4j5ir22rdyg60rfj2mp"; depends=[assertthat crypto2 dygraphs htmltools lubridate magrittr plotrix quantmod TTR zoo]; }; seasonalview = derive2 { name="seasonalview"; version="0.3"; sha256="1l705yc7ssldsfckbgnvd95sh3zzhpkmf1rr6ar2s60s3wsyly4n"; depends=[dygraphs htmlwidgets openxlsx seasonal shiny shinydashboard xtable xts zoo]; }; seastests = derive2 { name="seastests"; version="0.15.4"; sha256="1xy2hacd57v75y5snhn4al7bi71wr994jy6m2sdr6qzzsd5pbgpc"; depends=[forecast xts zoo]; }; seawaveQ = derive2 { name="seawaveQ"; version="2.0.2"; sha256="1x4vvassal1lwb9xnwisrhlx2maaqxl84h7klfy8yg9x80fdrhsw"; depends=[lubridate plyr reshape2 rms survival]; }; - secr = derive2 { name="secr"; version="4.6.6"; sha256="128ihlaf63q2mk4qkyd13lfna5isw8r83iz1lqrdv7q3gi7wl4w0"; depends=[abind BH MASS mgcv nlme raster Rcpp RcppEigen RcppNumerical RcppParallel sf stringr terra]; }; - secrdesign = derive2 { name="secrdesign"; version="2.9.0"; sha256="02nm4psgcfv93qq2bgrmx8f3z1b9rgx7gff3rkldkbd80pqz2iwp"; depends=[abind BH kofnGA Rcpp RcppArmadillo secr sf]; }; + secr = derive2 { name="secr"; version="4.6.7"; sha256="1zr2yp51dx5f8ggvwd9bspa3j08yjh6bpph7mpxqky7cn2clbf9b"; depends=[abind BH MASS mgcv nlme raster Rcpp RcppEigen RcppNumerical RcppParallel sf stringr terra]; }; + secrdesign = derive2 { name="secrdesign"; version="2.9.1"; sha256="03aibck9r4rs9cc9rywm8rs9s9swp7wil1xgfgy6fxpxypapqfvx"; depends=[abind BH kofnGA Rcpp RcppArmadillo secr sf]; }; secret = derive2 { name="secret"; version="1.1.0"; sha256="063gpyc2s2l6zw1j8b8ppzsv9kjsf0s77s5wcn7ipmwkj8qr2g4b"; depends=[assertthat curl jsonlite openssl rprojroot]; }; - secretbase = derive2 { name="secretbase"; version="0.3.0.1"; sha256="0mhfkkl35g10lgz4llm017f2jbgp7vmgi0g301r4agx1iqj5g51w"; depends=[]; }; + secretbase = derive2 { name="secretbase"; version="1.0.0"; sha256="1lnmkppw6scgdd3qd45jfvnrxx5bsa4b37z212aq6ss7xxjlv8wh"; depends=[]; }; secrettext = derive2 { name="secrettext"; version="0.1.0"; sha256="129v524yyb464mcij7hvzv05cxliaz5nm7v30g9g9ppskcdqhsx2"; depends=[dplyr magrittr rlang stringr testthat tidyr]; }; secrlinear = derive2 { name="secrlinear"; version="1.2.2"; sha256="1ivhl5imc7ic72h4v5276d2n02s39j78lcdr0rcx3dqycf3yyqag"; depends=[igraph MASS secr sf sp]; }; - secsse = derive2 { name="secsse"; version="3.0.2"; sha256="08rb3s40jj7jyi7294ba7pm9qgycdpk1lp18krh464jbr0iim62h"; depends=[ape BH DDD geiger ggplot2 Rcpp RcppParallel rlang tibble]; }; + secsse = derive2 { name="secsse"; version="3.1.0"; sha256="0v4qjsjmc7shqx8cy92c99fh6bfy2zdkwi2as05r2h4c2vk3p73z"; depends=[ape BH DDD geiger ggplot2 Rcpp RcppParallel rlang tibble treestats]; }; sectorgap = derive2 { name="sectorgap"; version="0.1.0"; sha256="0nn9cpy7svil2y9snvk5zznnlqd825gb4kxp31kzwcvwf5frx8q2"; depends=[dplyr ggplot2 KFAS MCMCpack tempdisagg tidyr zoo]; }; - secuTrialR = derive2 { name="secuTrialR"; version="1.1.1"; sha256="0i45zhbbvq052yn04j0xg69minclr7ns7f1pqdahx1cmf274pl42"; depends=[dplyr haven lubridate magrittr purrr readr readxl rlang stringr tibble tidyr]; }; + secuTrialR = derive2 { name="secuTrialR"; version="1.3.3"; sha256="1g6xfvgq4qgpgbhihpjxgxk87dwa9k2lhwrka4w1icyabchk6yg2"; depends=[dplyr haven lubridate magrittr purrr readr readxl rlang stringr tibble tidyr]; }; secure = derive2 { name="secure"; version="0.6"; sha256="1i0csl90w4qvhpnrxwrdhxzlmjw7hn30py36r41cd28igycz2bw3"; depends=[MASS Rcpp RcppArmadillo]; }; sedproxy = derive2 { name="sedproxy"; version="0.7.5"; sha256="1n5970pbdc0zl9vh0fslirlww56as5c090mnhzbic1fdzkhli245"; depends=[dplyr ggplot2 mvtnorm rlang tidyr]; }; - see = derive2 { name="see"; version="0.8.3"; sha256="00iikrn1jgaxawm1afi20biadk85f2y5zi2nrwah5vsd9m3g9n1m"; depends=[bayestestR correlation datawizard effectsize ggplot2 insight modelbased parameters performance]; }; + see = derive2 { name="see"; version="0.8.4"; sha256="0xz1n8n232jhp8r8w5isp1nzxscj0fqfm3hxgq6725hm14sl9wqj"; depends=[bayestestR correlation datawizard effectsize ggplot2 insight modelbased parameters performance]; }; seeclickfixr = derive2 { name="seeclickfixr"; version="1.1.0"; sha256="1agsqq2msrqrssffc6liyjjs6nqm90xy2inlcjbkdac5dhinjc4n"; depends=[jsonlite RCurl]; }; seecolor = derive2 { name="seecolor"; version="0.2.0"; sha256="1qfiq8dmakban9mh7rizm54risq48vw1ck7i5yl48ggqmr47mvzf"; depends=[crayon dplyr fansi ggplot2 magrittr purrr rstudioapi stringr]; }; seedCCA = derive2 { name="seedCCA"; version="3.1"; sha256="01v8hwhw5pap69n11czn0ma22vakhi3kfbly0rzasw9fsvf66xhg"; depends=[CCA corpcor]; }; - seededlda = derive2 { name="seededlda"; version="1.1.0"; sha256="16f39byv8ilhmz546q20702s6zfvwz8hwmg8cgyxyy76dqxxgmch"; depends=[Matrix proxyC quanteda Rcpp RcppArmadillo RcppParallel testthat]; }; + seededlda = derive2 { name="seededlda"; version="1.2.1"; sha256="1nvlmfx1ib9ffgippnlgiy7srnc4gasqailvsc0xfyxn70hsz9pb"; depends=[Matrix proxyC quanteda Rcpp RcppArmadillo testthat]; }; seedr = derive2 { name="seedr"; version="0.3.0"; sha256="15drbc0iplb97a2sym6jnrwij7ak5qckcw98n3m65x45apjwdmhq"; depends=[binom data_table]; }; seedreg = derive2 { name="seedreg"; version="1.0.3"; sha256="07wg48pn2v3wcwf5a34b4hc0s1flfpphrylr4d9bayaxsvi3k0xk"; depends=[boot car crayon dplyr drc emmeans ggplot2 gridExtra hnp multcomp multcompView sf stringr]; }; seeds = derive2 { name="seeds"; version="0.9.1"; sha256="0adk7y5ripg78bwkdgnlfwq9w9h6mlpdrikgbnn5z8az2qahc0in"; depends=[callr coda Deriv deSolve dplyr ggplot2 Hmisc MASS matrixStats mvtnorm pracma R_utils Ryacas statmod tidyr]; }; @@ -17713,11 +17994,11 @@ in with self; { seewave = derive2 { name="seewave"; version="2.2.3"; sha256="13c48sn453yp4j0ap8slnnr2gfhlxasz926p2pazkrg817w7m28z"; depends=[tuneR]; }; segMGarch = derive2 { name="segMGarch"; version="1.2"; sha256="0chw41h25jka9wa3rf3d8dq2ym47379jflv33q6qxaak8xy1kmd9"; depends=[corpcor doParallel fGarch foreach iterators mvtnorm Rcpp RcppArmadillo]; }; segRDA = derive2 { name="segRDA"; version="1.0.2"; sha256="0az27z4pppyz5slckwmgk6qqix710m1s96drlq4fh8bqn2qmz812"; depends=[vegan]; }; - segclust2d = derive2 { name="segclust2d"; version="0.3.1"; sha256="0g1x3871ah2vxyr8rk0dgjkcfridg7zhjsp9ahl50ighmmjdg9mp"; depends=[cli dplyr ggplot2 magrittr plyr RColorBrewer Rcpp RcppArmadillo reshape2 rlang scales zoo]; }; + segclust2d = derive2 { name="segclust2d"; version="0.3.3"; sha256="0vsdmlpf9nd8lbv8iwvywrzajbpc76ifvx2fx7mlai1pskgyqfwm"; depends=[cli dplyr ggplot2 magrittr plyr RColorBrewer Rcpp RcppArmadillo reshape2 rlang scales zoo]; }; segen = derive2 { name="segen"; version="1.1.0"; sha256="1l60rb1w0rfp1rv5favi4yxzyqs1nb1881mcz66xv789r3awhp11"; depends=[entropy fANCOVA fastDummies ggplot2 greybox imputeTS lubridate modeest moments narray philentropy purrr readr Rfast scales tictoc]; }; segmag = derive2 { name="segmag"; version="1.2.4"; sha256="1i717xg1z7s35pkwzywgjf9wx7zj9xksv0k87h7p1q62y073qbqm"; depends=[plyr Rcpp]; }; segmenTier = derive2 { name="segmenTier"; version="0.1.2"; sha256="01xbcddinjbkbqkwq2lnsxd3gw8fxys58p498dc2lw8psz3g2wgc"; depends=[Rcpp]; }; - segmented = derive2 { name="segmented"; version="2.0-3"; sha256="1f89v6zbxwl6yhx3qi7wrr3rndnxfwaf49mygw357f7cf3i8ma77"; depends=[MASS nlme]; }; + segmented = derive2 { name="segmented"; version="2.1-0"; sha256="1whcch1lw9y5fgy205377hr69xdjmav57z63vzgj7ammihja0yvd"; depends=[MASS nlme]; }; segmentr = derive2 { name="segmentr"; version="0.2.0"; sha256="0q5kxxiw0akpk7w2a2l9zp7v4pvqblzdvrld5fjyl5f6h8hsb40z"; depends=[foreach glue Rcpp]; }; segmetric = derive2 { name="segmetric"; version="0.3.0"; sha256="1cpkak3d91xjz6z4ls29ys1m5gmkqm7pq86vs88xy51z0av4kji7"; depends=[magrittr sf units]; }; segregation = derive2 { name="segregation"; version="1.1.0"; sha256="1l2dlqva58l9glpsn1bflbggk0645zhsr3a1n1ydikp7q54wf72m"; depends=[checkmate data_table Rcpp RcppProgress]; }; @@ -17735,7 +18016,7 @@ in with self; { selectiveInference = derive2 { name="selectiveInference"; version="1.2.5"; sha256="07kzpvdmflca1sriqfzn20f84fx2b9kwwiqm91lqjpx854bsx5kh"; depends=[adaptMCMC glmnet intervals MASS Rcpp survival]; }; selectr = derive2 { name="selectr"; version="0.4-2"; sha256="09y1n3iy297g49xlpl7xrjpwgnm57pskx5991lyfcpizbz8ax22m"; depends=[R6 stringr]; }; selectspm = derive2 { name="selectspm"; version="0.6"; sha256="02gzbzjdr8ij9gsrvx8wmz9q8r35zjniwcri2hmiz57h0svybvll"; depends=[ecespa spatstat spatstat_explore spatstat_geom spatstat_model spatstat_random]; }; - selenider = derive2 { name="selenider"; version="0.3.0"; sha256="13ay90p6andlwzsg60d67yl2ma1zaib66iir6gpgmw3y32gdqnhn"; depends=[cli coro curl lifecycle prettyunits processx rlang vctrs withr]; }; + selenider = derive2 { name="selenider"; version="0.4.0"; sha256="1pxc8vxrvx5dfvx4gqj025wddsmpys8grs33nmz7hlnj1vichlp3"; depends=[cli coro curl lifecycle prettyunits processx rlang vctrs withr]; }; selenium = derive2 { name="selenium"; version="0.1.3"; sha256="1v1bh9a1ybzwyzfsy7q82cjjaz2011zi9i80y275ayjwdsw1rfyf"; depends=[httr2 jsonlite lifecycle processx R6 rappdirs rlang]; }; seleniumPipes = derive2 { name="seleniumPipes"; version="0.3.7"; sha256="1krpzh2gy3yl07c2n1d8q21xjc2qcv5ac1kv7212710bxkdyfad6"; depends=[httr jsonlite magrittr whisker xml2]; }; selfingTree = derive2 { name="selfingTree"; version="0.2"; sha256="18ylxmg2ms4ccgm4ahzfl65x614wiq5id7zazjjz5y75h8gs7gzj"; depends=[foreach]; }; @@ -17749,22 +18030,22 @@ in with self; { semantic_dashboard = derive2 { name="semantic.dashboard"; version="0.2.1"; sha256="0518pdxgjjv8ql1aaysk64pv1pa01bbg3s7qdibw1v0c6pcf3adb"; depends=[checkmate glue htmltools shiny shiny_semantic]; }; semdrw = derive2 { name="semdrw"; version="0.1.0"; sha256="16hm1ifgspnxnlf3rfg5ylmql2fq91ig8nc5953ggyhfrjwbqx15"; depends=[dplyr lavaan psych semPlot semTools shiny shinyAce]; }; semds = derive2 { name="semds"; version="0.9-6"; sha256="10kvcmcy6qa2r5sram6azqgzl528rghfxgw2f2bq2fvhhq127dzq"; depends=[minpack_lm pracma]; }; - semfindr = derive2 { name="semfindr"; version="0.1.6"; sha256="0a51bpc4m9hq9kyyiibm8gi09lcrjmjw5i1biqnyfdii69yaf2w0"; depends=[ggplot2 ggrepel lavaan Matrix rlang]; }; + semfindr = derive2 { name="semfindr"; version="0.1.8"; sha256="02p2l5xsy53v6485as8azqamqy6cnjfmxb9zav1wnhm9p7d1f9ss"; depends=[ggplot2 ggrepel lavaan Matrix rlang]; }; semgram = derive2 { name="semgram"; version="0.1.0"; sha256="0l5n176mhjkn5kcjd1kfq9s897rg510m1acnmjxcaw0kmmhi4ggs"; depends=[data_table rsyntax stringr]; }; - semhelpinghands = derive2 { name="semhelpinghands"; version="0.1.10"; sha256="1rahflk228hla3pcchlpmd7b9sb5fd8851k9jnbxrfgbflxmxgrq"; depends=[boot ggplot2 ggrepel lavaan rlang]; }; + semhelpinghands = derive2 { name="semhelpinghands"; version="0.1.11"; sha256="1v6gyjk2awlpz8zpczkxifb2pdnd7js6l75kmrh9lbyy5s7q9xxi"; depends=[boot ggplot2 ggrepel lavaan rlang]; }; semiArtificial = derive2 { name="semiArtificial"; version="2.4.1"; sha256="0zsn3r5n7n3dsa02i194lr6ail7mizq9xp8x3kc5k17z4ckcfysd"; depends=[cluster CORElearn flexclust fpc ks logspline MASS mcclust nnet robustbase RSNNS StatMatch timeDate]; }; semicmprskcoxmsm = derive2 { name="semicmprskcoxmsm"; version="0.2.0"; sha256="00nxmyp4g1pxzqrw3zd5il92vinzpy12wnjnpm33nbh4wx2i5356"; depends=[fastGHQuad ggplot2 Rcpp survival twang]; }; semicontMANOVA = derive2 { name="semicontMANOVA"; version="0.1-8"; sha256="08z4r8klp2drch89jd4j3ji0439p6dr93db51vnm3bzic0dbrm01"; depends=[matrixcalc mvtnorm]; }; semidist = derive2 { name="semidist"; version="0.1.0"; sha256="0bgl7z78psd2b3v4c4fzhq0r8w0zfn408ji21cw1x7h87dg70qr2"; depends=[energy FNN furrr purrr Rcpp RcppArmadillo]; }; - seminr = derive2 { name="seminr"; version="2.3.2"; sha256="1385wwh7b0fq4jqm6ragdywwafdidq4scbljzbdpvm3wis07abqv"; depends=[DiagrammeR DiagrammeRsvg glue knitr lavaan rmarkdown testthat webp]; }; - semlbci = derive2 { name="semlbci"; version="0.10.4"; sha256="07qm89a0hcbp0w6mly6gs0212pczai22bfjy61c4b1q8i3a3bj8x"; depends=[ggplot2 ggrepel lavaan MASS nloptr pbapply rlang]; }; + seminr = derive2 { name="seminr"; version="2.3.3"; sha256="0y9lf8ik8rdq3j4hqw86zwaa4xsizgdryxsc8njxfzaw51z57ljm"; depends=[DiagrammeR DiagrammeRsvg glue knitr lavaan rmarkdown testthat webp]; }; + semlbci = derive2 { name="semlbci"; version="0.11.2"; sha256="131nbwq8g0l2imbjv61l83c5avhwqndhdgwkaf0hj0h6a0qwvhqa"; depends=[callr ggplot2 ggrepel lavaan MASS nloptr pbapply rlang]; }; semmcci = derive2 { name="semmcci"; version="1.1.4"; sha256="1j65z1h267pn941gcm5qbxgr6h7wf75iy6wz1jlzg76yfzsa47va"; depends=[lavaan mice]; }; semmcmc = derive2 { name="semmcmc"; version="0.0.6"; sha256="13asqiw3zazh9k3p39582a0bzm00gmagls2w76kvpygilj4r5391"; depends=[MASS msm]; }; semnar = derive2 { name="semnar"; version="0.8.1"; sha256="18c509yh52sdmvm60p0kzyz86fmzi0by4gnb2jw8nppv8qlnz6zb"; depends=[jsonlite leaflet lubridate parsedate urlshorteneR]; }; semnova = derive2 { name="semnova"; version="0.1-6"; sha256="1vghf8gy0vahwn3nq752wm0rbj33jdy69yqjzin94sk8xa42d0wi"; depends=[lavaan MASS Matrix]; }; semptools = derive2 { name="semptools"; version="0.2.10"; sha256="15rzkavr3njaln9mgn93ypbxw93prskvxw1s0865xqp58mh14k8y"; depends=[lavaan rlang semPlot]; }; semsfa = derive2 { name="semsfa"; version="1.1"; sha256="1k6i1m4r9y7j85rlrsgfjm8w15ax4xgf70xyvqwsszmf9950ldxx"; depends=[doParallel foreach gamlss iterators mgcv moments np]; }; - semtree = derive2 { name="semtree"; version="0.9.19"; sha256="0jasb4r07wv030isgxbbnaa9av2sm62qdzi4fljy2pgf94dx2x6l"; depends=[bitops clisymbols cluster crayon ctsemOMX data_table expm future_apply ggplot2 gridBase lavaan OpenMx rpart rpart_plot sandwich stringr strucchange tidyr zoo]; }; + semtree = derive2 { name="semtree"; version="0.9.20"; sha256="1dcxnlnl5j9dha5bdmj4rn117cbssdzp1gwdnch2pc0234ziq4ys"; depends=[clisymbols cluster crayon data_table expm future_apply ggplot2 gridBase lavaan OpenMx rpart rpart_plot sandwich strucchange tidyr zoo]; }; semver = derive2 { name="semver"; version="0.2.0"; sha256="10wpkyms2cix3bsin2q0qhkbl445pwwpa5gm2s4jjw1989namkxy"; depends=[assertthat Rcpp]; }; semverutils = derive2 { name="semverutils"; version="0.1.0"; sha256="0y3zh8n8bgs3ag8yy9cnp0i0xrn0iqflcbrya70glyb40148w9sw"; depends=[foreach R6]; }; sendgridr = derive2 { name="sendgridr"; version="0.6.1"; sha256="1lw17lhd3iwkp5mcbpwvwhlzgwk1nbz7xxic8fid8i22z1js22gc"; depends=[base64enc cli emayili httr jsonlite keyring magrittr usethis]; }; @@ -17790,29 +18071,29 @@ in with self; { sentiment_ai = derive2 { name="sentiment.ai"; version="0.1.1"; sha256="1wz34m5imzfwzf1ywidgb1xscsvf9nhri3w3wa2d8r7bk0nvlfjs"; depends=[data_table jsonlite reticulate roperators tensorflow tfhub xgboost]; }; sentimentr = derive2 { name="sentimentr"; version="2.9.0"; sha256="0i0lg2fl079wjv30lpqcxhx62miqakb9kzwwhrr4c18kl0bxbaav"; depends=[data_table ggplot2 lexicon stringi syuzhet textclean textshape]; }; sentometrics = derive2 { name="sentometrics"; version="1.0.0"; sha256="06qvwfgshr70n1qgf2zqjvycwwrak8d5hfyn3v5k2qzkfaxkihmm"; depends=[caret data_table foreach ggplot2 glmnet ISOweek quanteda Rcpp RcppArmadillo RcppParallel RcppRoll stringi]; }; - sentopics = derive2 { name="sentopics"; version="0.7.2"; sha256="0gi52lxkmhbhlsbpamwcrji1y664lrwk3k0pigc2gad3za9rdimc"; depends=[data_table quanteda Rcpp RcppArmadillo RcppHungarian RcppProgress]; }; + sentopics = derive2 { name="sentopics"; version="0.7.3"; sha256="1n9z2k4nwzd7j2nliar4v1as1vixx6cbmcysf4phjmh7qfay8bqk"; depends=[data_table generics quanteda Rcpp RcppArmadillo RcppHungarian RcppProgress]; }; sentryR = derive2 { name="sentryR"; version="1.1.2"; sha256="08k4ws4jrd50ymkp7v0i5jjss5brqxyxr36x1jnyqw1nzmchas5x"; depends=[httr jsonlite stringr tibble uuid]; }; separationplot = derive2 { name="separationplot"; version="1.4"; sha256="1dvm073mckn6mkyf6fvclc8glsr8d3p2413x5i91w00hphm2lg8z"; depends=[foreign Hmisc MASS RColorBrewer]; }; sephora = derive2 { name="sephora"; version="0.1.31"; sha256="1axh5qd8mp55d45k34935sm0wc6ib4b309a92d1vaxz3hzgvbygi"; depends=[doParallel dplyr dtwclust eBsc foreach geoTS ggnewscale ggplot2 MASS nlme rootSolve spiralize]; }; sepkoski = derive2 { name="sepkoski"; version="0.0.1"; sha256="1jx1ilbz7md501035vklk5bsw8krg8dn18pwkqynsacqy8wjwl2s"; depends=[]; }; - seqCBS = derive2 { name="seqCBS"; version="1.2.1"; sha256="176ggpdcgmpsjixmz0ldknyd0vw120kjyrid3bq2bn4cgkwzb74z"; depends=[clue]; }; seqDesign = derive2 { name="seqDesign"; version="1.2"; sha256="10p8ldj83mvhpcz1yas4xns5qh8zbs533na8nv87phngi8dsb76m"; depends=[survival]; }; seqHMM = derive2 { name="seqHMM"; version="1.2.6"; sha256="17rphq6n2pzgxma0v27vaixi4a343gzc6sk15czfd96kfz7m0gad"; depends=[gridBase igraph Matrix nloptr numDeriv Rcpp RcppArmadillo TraMineR]; }; seqICP = derive2 { name="seqICP"; version="1.1"; sha256="1dfhl7g47icjw38p9c0hyvnn3pwzw7pndywk22vgcyfhiz23xjcp"; depends=[dHSIC mgcv]; }; + seqSHP = derive2 { name="seqSHP"; version="0.1.1"; sha256="1p1flpw055jb135jpqlgdyyn19p6hwiqj9kx085irlyczi5kiimi"; depends=[dplyr haven]; }; seqest = derive2 { name="seqest"; version="1.0.1"; sha256="06zk87n26305m0hy6lg7v3bpxmsqvinwkvw3dvmzkqp5jdkhwikb"; depends=[foreach geepack MASS mvtnorm nnet Rcpp RcppArmadillo VGAM]; }; - seqgendiff = derive2 { name="seqgendiff"; version="1.2.3"; sha256="0vyrs4i3q3lyqx0b1as7h2rm3s5kbapq6jxzag8dwhf0ch7yz8gv"; depends=[assertthat cate clue irlba matchingR pdist sva]; }; + seqgendiff = derive2 { name="seqgendiff"; version="1.2.4"; sha256="0gc07dpmixf5cw8i2i42jyfjayzqy4c0w2ggwiyc7vrpxsrkxc02"; depends=[assertthat clue irlba matchingR pdist sva]; }; seqhandbook = derive2 { name="seqhandbook"; version="0.1.1"; sha256="0pr4h19g4sa9g7x3di3k18abmabn6ywigdhx2h4b5y88zcnizfam"; depends=[TraMineR]; }; - seqimpute = derive2 { name="seqimpute"; version="1.8"; sha256="1vivs790zbwm8c7fwifz0nj0n9wzjmr8whz0f4pwp44gvcickxwn"; depends=[Amelia cluster dfidx doRNG doSNOW dplyr foreach mice mlr nnet plyr ranger rms stringr swfscMisc TraMineR]; }; + seqimpute = derive2 { name="seqimpute"; version="2.0.0"; sha256="1g60drnx12j6wzkisxlmhidvqzzgsrmmmmp8dljq94bb5iv8xjmz"; depends=[Amelia cluster dfidx doRNG doSNOW dplyr foreach mice mlr nnet plyr ranger rms stringr TraMineR TraMineRextras]; }; seqinr = derive2 { name="seqinr"; version="4.2-36"; sha256="09dj2k5mi6xylsihnwbmdd8f4qg855gyh7yvz9gamam7j6h646lk"; depends=[ade4 segmented]; }; seqmagick = derive2 { name="seqmagick"; version="0.1.7"; sha256="1rdq24192yl7w0jsnw1zhj7qzi8qb08dw95iyxyf0rm2q34q1kwm"; depends=[Biostrings magrittr yulab_utils]; }; seqminer = derive2 { name="seqminer"; version="9.4"; sha256="0m9ysdq4ch4c2i3d86gd32rbi0v637djvr295wzzwgkflk66sz5c"; depends=[]; }; - seqmon = derive2 { name="seqmon"; version="2.4"; sha256="1aqrg9aqvsabg5mm9jfj5vaxxaapfs1qw3yyzbx7vsspcgjdhyca"; depends=[]; }; + seqmon = derive2 { name="seqmon"; version="2.5"; sha256="0y08xn0r6sj6priksz72mgfdasm167smvqi4rjiwrcv5qqv0blbl"; depends=[]; }; seqtest = derive2 { name="seqtest"; version="0.1-0"; sha256="1bdfww9szh7h278id5xpfc39mxkcix3yvsdwc68wx3q3x0wxhqhq"; depends=[]; }; - seqtrie = derive2 { name="seqtrie"; version="0.2.6"; sha256="17kpj96vmgy9rhfk64mzcpm3cdfq73z2m4j8qx8g4l46zyv3cr1i"; depends=[BH dplyr R6 Rcpp RcppParallel rlang stringi]; }; - sequoia = derive2 { name="sequoia"; version="2.9.0"; sha256="0fqmhhcwpa8ikp94qzxnl0pyp3mkjfp7hp8qwfinfjxvawnm26ph"; depends=[plyr]; }; + seqtrie = derive2 { name="seqtrie"; version="0.2.8"; sha256="12pkcb5ylqlr7ljzrwna6fjqvnikgvsr7k664bw6xkbx1g370s2a"; depends=[BH dplyr R6 Rcpp RcppParallel rlang stringi]; }; + sequoia = derive2 { name="sequoia"; version="2.11.2"; sha256="09ji88hylic73m23gq24m9fp2zqlfz06xypd8sajj2k6q8105nbn"; depends=[cli plyr]; }; sergeant = derive2 { name="sergeant"; version="0.9.1"; sha256="0mgrrlny1qfddznyc34awh8vkbjnyskbyqrxszdhsm2c5wgp2nwh"; depends=[bit64 DBI dbplyr dplyr htmltools httr jsonlite magrittr purrr readr scales stringi tibble]; }; serial = derive2 { name="serial"; version="3.0"; sha256="1y1gj0lcdn5apiv6c6arks6pqhsbvnrfym6n2izjarx2c27ijrjj"; depends=[]; }; - seriation = derive2 { name="seriation"; version="1.5.4"; sha256="17rk4674r5knfgqyik9gbz6yj42qv6h79j2prw79glc1ym99qcyj"; depends=[ca cluster colorspace foreach gclus MASS qap registry TSP vegan]; }; + seriation = derive2 { name="seriation"; version="1.5.5"; sha256="0v84pic838rpbcmrz8ip466aagz57vmzlgfk0vkhlcv8zn34r0zp"; depends=[ca cluster colorspace foreach gclus MASS qap registry TSP vegan]; }; serieslcb = derive2 { name="serieslcb"; version="0.4.0"; sha256="1ip4k2xzg06hwsni62ai1whs1zzhwlf94507inpfpqz3jmmafrhq"; depends=[gplots shiny]; }; serp = derive2 { name="serp"; version="0.2.4"; sha256="0hd25rxknj636ssy2289xjvq5fflp2p561yb9w0siqihfc7cfjpc"; depends=[crayon ordinal]; }; serpstatr = derive2 { name="serpstatr"; version="0.2.1"; sha256="09yzxkwgargd42f0bngv6jzhd8arzbvwj2js7lb9yf7vhjq1xv5f"; depends=[httr]; }; @@ -17825,8 +18106,8 @@ in with self; { setRNG = derive2 { name="setRNG"; version="2024.2-1"; sha256="0h2wbpsi07c48h72zjglvp9b58hq3j77289sah32qg6vnw41pcp3"; depends=[]; }; setartree = derive2 { name="setartree"; version="0.2.1"; sha256="13j0shmnnwnbkzgl1wnirvfd9yi29smn3a5cjxg5xg89bjh77wc6"; depends=[generics]; }; sets = derive2 { name="sets"; version="1.0-25"; sha256="1x14q29jjmrs5ldbjc7pxp5pr52j3dw6zr9k5qvz4ycniwhnk92w"; depends=[]; }; - setter = derive2 { name="setter"; version="0.0-1"; sha256="10fwrx8yysp99rrkbnn3rbz79vyzr2h3p7zxxlqapw1k2lllp0r5"; depends=[assertive_base]; }; settings = derive2 { name="settings"; version="0.2.7"; sha256="1i9ij5k8p2v9gxr48vas8hj337mbyx9c4ywv9bbdwkz6kzah46k5"; depends=[]; }; + settingsSync = derive2 { name="settingsSync"; version="3.0.2"; sha256="0bb8cdj68473hi4fvwhcqyhpxclx4x42dpc9ghvhp42lhw1lgbi4"; depends=[cli dplyr glue googledrive jsonlite rappdirs tibble yesno]; }; sevenbridges2 = derive2 { name="sevenbridges2"; version="0.1.0"; sha256="1z3sp85jvqzzf6szi2bz69wyp44spvc0r2gm81shak2fk5z8460f"; depends=[checkmate cli curl data_table DescTools glue httr jsonlite purrr R6 readr rlang stringr yaml]; }; sever = derive2 { name="sever"; version="0.0.7"; sha256="10jckf6q31blsl1yhs5f1mx7b8sm8sqb86iakcvaslf651ijx81m"; depends=[cli htmltools shiny]; }; sewage = derive2 { name="sewage"; version="0.2.5"; sha256="171rd59w90q29a9ywdx5225gw6m57bz9rcj25ql38jk62xdmrx69"; depends=[cli DiagrammeR glue]; }; @@ -17844,15 +18125,16 @@ in with self; { sfhotspot = derive2 { name="sfhotspot"; version="0.8.0"; sha256="17vlayqqhv59p9mhrxzxs5r6gfqd6wyyi1k6p05n2sd9c06jzadb"; depends=[ggplot2 rlang sf SpatialKDE spdep tibble]; }; sfinx = derive2 { name="sfinx"; version="1.7.99"; sha256="14v47y00qwvc2s0vzjw19hwn85nzj8lna539c75qq6zkn6kir6va"; depends=[]; }; sfislands = derive2 { name="sfislands"; version="1.0.0"; sha256="1x3jybr0nhms375ynik8v8nx9n2r9gada1fpnx9vhbykdiz5w8jm"; depends=[broom_mixed dplyr ggplot2 purrr sf spdep stringr tidyr]; }; - sfnetworks = derive2 { name="sfnetworks"; version="0.6.3"; sha256="0caqqcdkm5g8f08k7dws6gcm560m88w6g98sbx0bsamf54cxda33"; depends=[crayon dplyr igraph lwgeom rlang sf sfheaders tibble tidygraph units]; }; + sfnetworks = derive2 { name="sfnetworks"; version="0.6.4"; sha256="0q64ki4ylgkwnz4g43pq43hv9lspi1akyssjpbd4947x69hlyhiz"; depends=[crayon dplyr igraph lwgeom rlang sf sfheaders tibble tidygraph units]; }; sfo = derive2 { name="sfo"; version="0.1.2"; sha256="0q821i9w4kbzpmiym1sha086nr59yydbyig84jy7hws186lkvi7m"; depends=[]; }; - sfsmisc = derive2 { name="sfsmisc"; version="1.1-17"; sha256="06ih8zljs57scy7jfnv32yxijgv1i60vggmlyyblwnff6mr2fm60"; depends=[]; }; + sfsmisc = derive2 { name="sfsmisc"; version="1.1-18"; sha256="1bc3qjnh3k4ia7w2sdbawr4rp8w9pmcbzbdjg7qbiwmpx6h2w19k"; depends=[]; }; sft = derive2 { name="sft"; version="2.2-1"; sha256="0fxz64ba58n6ghfqsgq64n1c7qkvi8c3lsa86732mil9w71yxw33"; depends=[fda SuppDists]; }; sftime = derive2 { name="sftime"; version="0.2-0"; sha256="1ymi60ag8kqb3293bdcvb83zwsgrz000ylifjvlpzzmh1xsisanq"; depends=[sf]; }; sftrack = derive2 { name="sftrack"; version="0.5.4"; sha256="0cm87fla8bnhp1j35wq2llw1jziqhgfcj1yn503z4ds40gh4wnqa"; depends=[sf]; }; sgPLS = derive2 { name="sgPLS"; version="1.8"; sha256="16cjhrla1f4pf2gqfnbi5n1ai69nbr80crwn1f29ldk483d6hjc5"; depends=[mixOmics mvtnorm]; }; - sgapi = derive2 { name="sgapi"; version="1.0.1"; sha256="11wkj0x4rhbijkd0vpmd2rdjzfkf9ia1fzaswidrl0wp8kw2a5x7"; depends=[dplyr httr magrittr readr sf xml2]; }; + sgapi = derive2 { name="sgapi"; version="1.0.2"; sha256="0q0qamhzsn4421wzbjfqlwrs2w4qj61ynvjh9pjv7fkk89szh7xx"; depends=[dplyr httr magrittr readr sf xml2]; }; sgat = derive2 { name="sgat"; version="0.9"; sha256="14sniq5yfh7xmbnd8d0ighw97352qjgfdg587a6hxafisx9is61p"; depends=[data_table dplyr plyr qdapRegex RCurl RSelenium stringr]; }; + sgboost = derive2 { name="sgboost"; version="0.1.3"; sha256="1x3ppg2sivl2r3w1pbqvam7cvrd86agxbqdmkgf2qkvy3hf5gdga"; depends=[dplyr ggforce ggplot2 mboost rlang stringr tibble]; }; sgd = derive2 { name="sgd"; version="1.1.2"; sha256="0spcv9dysl2vlgrpjxicai9nkg7hylf2wci45pjpl8jph6yj8c70"; depends=[BH bigmemory ggplot2 MASS Rcpp RcppArmadillo]; }; sgee = derive2 { name="sgee"; version="0.6-0"; sha256="055iydainzywb1s5id5rl9i94dj5arr9b6qz15p8wps49vm2mlp3"; depends=[copula mvtnorm]; }; sgeostat = derive2 { name="sgeostat"; version="1.0-27"; sha256="1iq9p2jk8bpv1h853a1l91d5c5dxnhkk3cmkd01siqqvj04hv4vb"; depends=[]; }; @@ -17865,6 +18147,7 @@ in with self; { sgolay = derive2 { name="sgolay"; version="1.0.3"; sha256="0qry7286kw6ks5kc3wp89ax43smmb6b77gral72izpbw5wkblphm"; depends=[signal]; }; sgpv = derive2 { name="sgpv"; version="1.1.0"; sha256="0w0slnnw239a34c0h7xr76c4m0rfwl0hq61g9n12vzxd6lfh3gqz"; depends=[]; }; sgr = derive2 { name="sgr"; version="1.3.1"; sha256="0m7rl3yii6zz4p21aiaifj1ram6gi6x5kywpyx9yjan79180q8h7"; depends=[MASS]; }; + sgraph = derive2 { name="sgraph"; version="1.0.0"; sha256="07kqgzdfhkmannx5kpnmm2hrw74ywpnbi9964628lk82pi9g8la9"; depends=[cowplot ggplot2 htmlwidgets igraph jsonlite magrittr RColorBrewer stringi]; }; sgs = derive2 { name="sgs"; version="0.1.1"; sha256="0glyxlimh97qyhjsqkal05ncjmr6wqa00y9fa4j9ilkqyq6nn0jq"; depends=[caret faux MASS Matrix Rcpp RcppArmadillo Rlab SLOPE]; }; sgsR = derive2 { name="sgsR"; version="1.4.5"; sha256="1ircbwlc6ysv8v8vxn5snjqx47qhi5rdqyd3vvf3cx54jndsnvah"; depends=[BalancedSampling clhs dplyr ggplot2 SamplingBigData sf spatstat_geom terra tidyr]; }; sgstar = derive2 { name="sgstar"; version="0.1.2"; sha256="0b3bw10lf5h4kgg3c0s3lxsafaffhn8gc9kxmg7bg35lbxv0r1vn"; depends=[dplyr ggplot2 tidyr]; }; @@ -17877,7 +18160,7 @@ in with self; { shapeR = derive2 { name="shapeR"; version="1.0-1"; sha256="02al1g9ycfb63mcx4s16abniggl825ihjanx6silbpv6dn6g1ms8"; depends=[jpeg MASS pixmap plotrix vegan wavethresh]; }; shapefiles = derive2 { name="shapefiles"; version="0.7.2"; sha256="03sdcxbah05x0j6cpygx3ivkzrdlz2c0frxi30cinb05q6a41yjb"; depends=[foreign]; }; shapes = derive2 { name="shapes"; version="1.2.7"; sha256="155q6asc9202f85snyjaxhm8qpj7swgzhg95sisjy506gvcb6c8z"; depends=[MASS minpack_lm rgl scatterplot3d]; }; - shapley = derive2 { name="shapley"; version="0.1"; sha256="0x8fdl1kg027gl48ki9r1xlihqfhqvlaqkwjjrrw51k85r4ly1kb"; depends=[curl ggplot2 h2o waffle]; }; + shapley = derive2 { name="shapley"; version="0.3"; sha256="0zr1mjpsn7s1wb708vza5vlv5biqcx3h7ng36rfq7v08lzrakwqk"; depends=[curl ggplot2 h2o waffle]; }; shapper = derive2 { name="shapper"; version="0.1.3"; sha256="1jaj9j894md45611gdrz05n0kfakawf7vlcc3zxhwdh3f7kwz4lp"; depends=[DALEX ggplot2 reticulate]; }; shapr = derive2 { name="shapr"; version="0.2.2"; sha256="0c8vivr1ia7x4jvdsffv06nl2yahxx38r5xbws5cdkalhbhlwv4h"; depends=[condMVNorm data_table Matrix mvnfast Rcpp RcppArmadillo]; }; shapviz = derive2 { name="shapviz"; version="0.9.3"; sha256="01zq6kr5na40xgypif6sv2pjynhva9v0npx779k7fxck1db68z80"; depends=[ggfittext gggenes ggplot2 ggrepel patchwork rlang xgboost]; }; @@ -17887,8 +18170,8 @@ in with self; { sharpPen = derive2 { name="sharpPen"; version="1.9"; sha256="0ra1iq6bfiy87arj7nb4s4adiji3pcp7vrjhsfbm2agfw05k4zj4"; depends=[glmnet KernSmooth locpol Matrix np]; }; sharpeRratio = derive2 { name="sharpeRratio"; version="1.4.3"; sha256="0ndqckz7pi099yynzfwzcbz9jcz93bb9jcd2a4px2sjbagfmx7ag"; depends=[ghyp Rcpp]; }; sharpr2 = derive2 { name="sharpr2"; version="1.1.1.0"; sha256="1r7anfr296l5sbhgry6rb15hlca6mpcm24qssdzz9bckavyfvqgi"; depends=[Matrix mvtnorm]; }; - sharpshootR = derive2 { name="sharpshootR"; version="2.2"; sha256="0qy2glasnsmrdbgx7pvbhi0dzidgkfjl67ay5gkfjdy477n5micy"; depends=[ape aqp circular cluster curl digest e1071 lattice plyr RColorBrewer reshape2 scales soilDB stringi vegan]; }; - sharx = derive2 { name="sharx"; version="1.0-5"; sha256="10sfjg6946jfk4051da0w1v89503av40wckqaabr12syf8kn0aw8"; depends=[dclone dcmle Formula]; }; + sharpshootR = derive2 { name="sharpshootR"; version="2.3.1"; sha256="1cvq2wh05dkaijkmwm20bs7xcmcv0xwv1gcf535xnd9gkzpy8xdr"; depends=[ape aqp circular cluster curl digest e1071 lattice plyr RColorBrewer reshape2 scales soilDB stringi]; }; + sharx = derive2 { name="sharx"; version="1.0-6"; sha256="0fyz7m8zx2i4r1kj5svzmn6l43f7zg2sj4c3ynyjwa1lzi5wf75v"; depends=[dclone dcmle Formula]; }; shattering = derive2 { name="shattering"; version="1.0.7"; sha256="0dmb57pdgzwm001gfm1zm8ba7x71bp2vjk4ml0cy4r05hpdswfh3"; depends=[e1071 FNN NMF pdist pracma rmarkdown Ryacas slam]; }; shazam = derive2 { name="shazam"; version="1.2.0"; sha256="16bkwm903v4hv6ng6ncfzax2s5x8qfa4ldlwzclry7iggniq7dzh"; depends=[alakazam ape diptest doParallel dplyr foreach ggplot2 igraph iterators KernSmooth lazyeval MASS progress rlang scales seqinr stringi tidyr tidyselect]; }; shelltrace = derive2 { name="shelltrace"; version="3.5.1"; sha256="1xgbavaa26185i6q3907ds3bzq4xrw027x1sw5vsybqrxdz04jiz"; depends=[bmp tiff xlsx]; }; @@ -17897,19 +18180,19 @@ in with self; { shide = derive2 { name="shide"; version="0.2.0"; sha256="1czdl0i93plqc1d2cf874603s4fiym96kv4d23vr1kvy2kx1jnh9"; depends=[cpp11 rlang tzdb vctrs]; }; shiftR = derive2 { name="shiftR"; version="1.5"; sha256="18y2qzqx8hd6yph1wnsq4ygm16pcdszynh174xsrxrhvx2h9mi4x"; depends=[]; }; shinipsum = derive2 { name="shinipsum"; version="0.1.1"; sha256="1l6skq9y5417x174l7svbvvlh10vv5kdnp2s4q7g76l62y710ks4"; depends=[attempt DT dygraphs ggplot2 magrittr plotly]; }; - shiny = derive2 { name="shiny"; version="1.8.0"; sha256="0ha6w3pxmc1v2q10frhhf0qmbrfs0aq2gbdjmcyqnzkh52x411zj"; depends=[bslib cachem commonmark crayon ellipsis fastmap fontawesome glue htmltools httpuv jsonlite later lifecycle mime promises R6 rlang sourcetools withr xtable]; }; + shiny = derive2 { name="shiny"; version="1.8.1.1"; sha256="0lv7wfbmv72ilckm46dvkc0cg6qzih9iy4793h4w5qjhsysmz3d3"; depends=[bslib cachem commonmark crayon fastmap fontawesome glue htmltools httpuv jsonlite later lifecycle mime promises R6 rlang sourcetools withr xtable]; }; shiny_benchmark = derive2 { name="shiny.benchmark"; version="0.1.1"; sha256="14k51vhd3gngdpg67kn9gsd6i47sn9vkxx1qni139jlza7g9n0jx"; depends=[dplyr fs ggplot2 glue jsonlite progress renv shinytest2 stringr testthat]; }; - shiny_blueprint = derive2 { name="shiny.blueprint"; version="0.2.0"; sha256="1g0c0iqp5yx24yzzxjnh7yjflx0k5pgkz6p415ml39pyczgq7107"; depends=[checkmate htmltools shiny shiny_react]; }; + shiny_blueprint = derive2 { name="shiny.blueprint"; version="0.3.0"; sha256="1hxn9z565g34fx7wbx5648sx2q4q1w2nggbfcjplrjwg709swbdr"; depends=[checkmate htmltools shiny shiny_react]; }; shiny_emptystate = derive2 { name="shiny.emptystate"; version="0.1.0"; sha256="07vw8dw6yv3gqp400h2b1x2nv2v3hzgfgmhb8fxxdicbx08vxv47"; depends=[fontawesome htmltools R6 shiny]; }; shiny_exe = derive2 { name="shiny.exe"; version="0.2.0"; sha256="0657ywbnkg3k67321v9rkmfqqrkn89qzyidri0gfhs53c96yrijm"; depends=[]; }; - shiny_fluent = derive2 { name="shiny.fluent"; version="0.3.0"; sha256="14cqa2czg3b60cxb8v4kycgk74cgdg9y8pg76mglnjv6rksmvwkl"; depends=[htmltools jsonlite rlang shiny shiny_react]; }; + shiny_fluent = derive2 { name="shiny.fluent"; version="0.4.0"; sha256="0d6925apv6vwbhyzxlzli7j18yzz4raxf32p7mgwsrwirjkhj21s"; depends=[htmltools jsonlite purrr shiny shiny_react]; }; shiny_i18n = derive2 { name="shiny.i18n"; version="0.3.0"; sha256="0kcdvan8ds1kdqdxk6yvqpxlxv6xj4nxr8mp1qns3fzklyf4n4gy"; depends=[glue jsonlite R6 rstudioapi shiny stringr yaml]; }; shiny_info = derive2 { name="shiny.info"; version="0.2.0"; sha256="162wvb02z5h1y7xgsyl6wv88zlfmbm1jlnz48f56fyybs54baw41"; depends=[git2r glue shiny]; }; shiny_pwa = derive2 { name="shiny.pwa"; version="0.2.1"; sha256="120wqqy7fh7nm2bib3dq02a92jb3lykkl7qayiw6bnax8sdr18yw"; depends=[htmltools readr shiny urltools]; }; - shiny_react = derive2 { name="shiny.react"; version="0.3.0"; sha256="0s4v2k0x04qcpjsb44c3rhgkzh0004r4hga3dkghcpzkgz6pfx2h"; depends=[glue htmltools jsonlite logger purrr rlang shiny]; }; + shiny_react = derive2 { name="shiny.react"; version="0.4.0"; sha256="115kxwfpwirj34djzk7r4akdq1a6ril3lg9xzii60wiqc1panbdd"; depends=[glue htmltools jsonlite logger purrr rlang shiny stringi]; }; shiny_reglog = derive2 { name="shiny.reglog"; version="0.5.2"; sha256="018dnnisidmn799api7kgwknvm3ka2sk1vvq2wcx65acqc450i18"; depends=[dplyr lifecycle lubridate R6 scrypt shiny shinyjs stringi uuid]; }; shiny_router = derive2 { name="shiny.router"; version="0.3.1"; sha256="1zg8cdxmw620i1iv7jrghd768gw7iv52hi6lx79xvnfjz8w4si3x"; depends=[glue htmltools rlang shiny]; }; - shiny_semantic = derive2 { name="shiny.semantic"; version="0.5.0"; sha256="18ap0n3jgbpa9z5wk66qxf6qpdclhvmx6pralk4b8c8h5g57w465"; depends=[glue htmltools htmlwidgets jsonlite magrittr purrr R6 semantic_assets shiny]; }; + shiny_semantic = derive2 { name="shiny.semantic"; version="0.5.1"; sha256="1gfkwgij365j0i9wz7dqdadpa9mdarn8n70cygm46fcak7lp08h8"; depends=[glue htmltools htmlwidgets jsonlite magrittr purrr R6 semantic_assets shiny]; }; shiny_tailwind = derive2 { name="shiny.tailwind"; version="0.2.2"; sha256="12z6cnir7gyh01pw2l2wmsx1kw4yjh7i4p6afr05mqik9kfiljw2"; depends=[htmltools shiny]; }; shiny_telemetry = derive2 { name="shiny.telemetry"; version="0.2.0"; sha256="0kp0wb3rh501bg7y8r90bwy1bbz5skmlvfjsqxj3nc1gpanndbjs"; depends=[checkmate digest dplyr glue httr2 jsonlite logger lubridate odbc purrr R6 rlang RSQLite shiny tidyr]; }; shiny_worker = derive2 { name="shiny.worker"; version="0.0.1"; sha256="1l30dx46s3q1x9nd42r6dracd3lqkjk80r9jyjqy8lmdsq48300i"; depends=[future R6 shiny]; }; @@ -17917,12 +18200,12 @@ in with self; { shinyBS = derive2 { name="shinyBS"; version="0.61.1"; sha256="0h51685a9qll4agayldjyryi60ih969219ibg071slv0613p5v8a"; depends=[htmltools shiny]; }; shinyChakraSlider = derive2 { name="shinyChakraSlider"; version="0.1.0"; sha256="1vsbw9dm8ai2w6mfdaksxh13ryh2awajqgkcwcxb99l47h17rvpy"; depends=[htmltools reactR shiny]; }; shinyChakraUI = derive2 { name="shinyChakraUI"; version="1.1.1"; sha256="08qy6qrrprqlarwd3kab9s92dlx51jkhk7mikkf0mdhl6n2q26py"; depends=[fontawesome formatR htmltools jsonlite reactR rlang shiny stringr]; }; - shinyChatR = derive2 { name="shinyChatR"; version="1.1.0"; sha256="08370x2yc8v32h2qgvwd26c2yrx2n89k85sz5dinv110lkrwr6f2"; depends=[data_table DBI purrr R6 shiny]; }; + shinyChatR = derive2 { name="shinyChatR"; version="1.2.0"; sha256="174jm8a52h7lr4bvl88ajllhknzczq8lwvbrldh07hiphbid071d"; depends=[data_table DBI purrr R6 shiny]; }; shinyCohortBuilder = derive2 { name="shinyCohortBuilder"; version="0.2.1"; sha256="1ld8sing87s5r2yxhd5w9wybacx508hgp1crbrpnirq80jnmrazy"; depends=[bslib cohortBuilder dplyr ggiraph ggplot2 glue highr htmltools htmlwidgets jsonlite lifecycle magrittr purrr rlang shiny shinyGizmo shinyWidgets tibble tryCatchLog]; }; - shinyCox = derive2 { name="shinyCox"; version="1.0.1"; sha256="1fl2dj3568x7s47njz2lgnwr12s72mny4wi5gs99wm66mhzi5bf3"; depends=[shiny survival]; }; + shinyCox = derive2 { name="shinyCox"; version="1.1.0"; sha256="055v9mxy3z0ks5fvfqs1qf7cb8mavxd2p55790ndj3k04vf6mwd2"; depends=[shiny survival]; }; shinyCyJS = derive2 { name="shinyCyJS"; version="1.0.0"; sha256="1xgrjk7iyg313x0wkg9q3mp63aidbbhxmjp3jv8cgr4w6qcv0ny6"; depends=[htmlwidgets]; }; shinyDND = derive2 { name="shinyDND"; version="0.1.0"; sha256="0nkvz4hmjzmxlzj4vkjrdy8xlbxapg1amk180irgvwicqldi4jpm"; depends=[htmltools shiny]; }; - shinyDatetimePickers = derive2 { name="shinyDatetimePickers"; version="1.1.0"; sha256="1wlll71j8yxgpf08lgsy5hgp0jdy0ldybsqflw2q8vdd3219n67v"; depends=[htmltools lubridate reactR shiny]; }; + shinyDatetimePickers = derive2 { name="shinyDatetimePickers"; version="1.2.0"; sha256="1vl61mp3skpzq7cbcxz6ylkiajj7krk00ci9kzqb8d0hynrgx1ii"; depends=[htmltools lubridate reactR shiny]; }; shinyEffects = derive2 { name="shinyEffects"; version="0.2.0"; sha256="1ajar09hmrk7vcw89wkgvkz2yl0cfnkz915b57w1lmbvpxzgsq3i"; depends=[htmltools shiny]; }; shinyExprPortal = derive2 { name="shinyExprPortal"; version="1.1.0"; sha256="0740qzwz2wcl5avby2x50kjg51la6nfzz92lfk2ysnfvq58ph6aa"; depends=[bslib cli config data_table dplyr DT htmltools iheatmapr markdown qvalue Rfast rlang shiny shinyhelper tidyr vegawidget yaml]; }; shinyFeedback = derive2 { name="shinyFeedback"; version="0.4.0"; sha256="1xfznq2d4wkk0b0y4k25rwg4d3bhn3gxlkf3chfqk44f4rgril11"; depends=[fontawesome htmltools jsonlite shiny]; }; @@ -17932,14 +18215,14 @@ in with self; { shinyHeatmaply = derive2 { name="shinyHeatmaply"; version="0.2.0"; sha256="1n7c7dvvb9kqay2phcf0bkwi990x1cjl7js6pq05xx7rli5bc5h4"; depends=[dplyr heatmaply htmltools plotly readxl rmarkdown shiny xtable]; }; shinyHugePlot = derive2 { name="shinyHugePlot"; version="0.2.6"; sha256="1sf26jz2jbyrs11a1gricnb3iq4106cpf10kbhqx0hy12q47lk1y"; depends=[assertthat bit64 data_table dplyr htmltools jsonlite lazyeval nanotime plotly purrr R6 rlang shiny shinyjs stringr tibble tidyr tidyselect]; }; shinyIRT = derive2 { name="shinyIRT"; version="0.1"; sha256="01x7nhjs1dx2ldwznhbavc5vzqhgkn73xg395vlf2hgzbxa2ydvj"; depends=[irtoys magrittr mirt psych readxl shiny shinycssloaders shinydashboard]; }; - shinyInvoice = derive2 { name="shinyInvoice"; version="0.0.4"; sha256="1s1zmjp37px2wksa4acw3jng659k5zgm1a8pk23kb4f9kr7hjpfd"; depends=[dplyr lubridate quantmod rlang shiny stringr tibble]; }; + shinyInvoice = derive2 { name="shinyInvoice"; version="0.0.5"; sha256="024dnyrdkb4ws0glj6yib0fxz22biysvndsppffdhxri3afvs2by"; depends=[dplyr lubridate quantmod rlang shiny stringr tibble]; }; shinyKGode = derive2 { name="shinyKGode"; version="1.0.5"; sha256="004zwz4kqfijzvvwkq8v1gi25w1wrdlg8230g93w36gbi6cl2vk1"; depends=[ggplot2 gridExtra KGode mvtnorm pracma pspline reshape2 shiny shinyjs XML]; }; shinyKnobs = derive2 { name="shinyKnobs"; version="0.1.3"; sha256="1rxlvq4vr87krf7d6mpx0y53hyz8q1jnx6nv7mlhc1ck13q6fgac"; depends=[htmltools shiny]; }; shinyLP = derive2 { name="shinyLP"; version="1.1.3"; sha256="1cdi9dbaz1q71c0wb5a910xz3rspqgqxdk14ibhh06lb0hs9n4nc"; depends=[shiny]; }; shinyML = derive2 { name="shinyML"; version="1.0.1"; sha256="086iavycv1gd6scfsixf7cmw0s5a4dc6x5cylfasxrzgiixd76c9"; depends=[argonDash argonR data_table dplyr DT dygraphs ggplot2 h2o lubridate plotly shiny shinycssloaders shinyjs shinyWidgets sparklyr tidyr]; }; - shinyMatrix = derive2 { name="shinyMatrix"; version="0.6.0"; sha256="17v7gg5bli6x3w063id804859m6g07i9ksbm2jyb65489pjgpadk"; depends=[jsonlite shiny]; }; + shinyMatrix = derive2 { name="shinyMatrix"; version="0.8.0"; sha256="0dlmih1xf49vaw27r83dyzbz7w6wfvz06iz214pcp0xp51hx37gw"; depends=[jsonlite shiny]; }; shinyMergely = derive2 { name="shinyMergely"; version="0.2.0"; sha256="1rvv5lcbb17i263xx1zn9524iwpmw56xwh0b2qii8096l20w6cnd"; depends=[shiny]; }; - shinyMobile = derive2 { name="shinyMobile"; version="1.0.1"; sha256="1nsvqcv6bspmbgkjrw4ysm08g1d2qf68rh8bdk0kvc27shzyw33z"; depends=[gplots htmltools httr jsonlite magrittr shiny]; }; + shinyMobile = derive2 { name="shinyMobile"; version="2.0.0"; sha256="0n678q4rqf2fxv8mv683byd9zjl7hg6rlvycf3g519griksba5mn"; depends=[gplots htmltools jsonlite lifecycle magrittr shiny]; }; shinyMolBio = derive2 { name="shinyMolBio"; version="0.2"; sha256="09lq5pvis450il1agcq5n9cilnq84rfv08w2dz1d0bbq1qgrgnvg"; depends=[checkmate dplyr plotly purrr RColorBrewer RDML shiny stringr whisker]; }; shinyMonacoEditor = derive2 { name="shinyMonacoEditor"; version="1.1.0"; sha256="12inzz9vrxi1465l82fafjva198qxyzwailx1s0fm58cqzhnqxr6"; depends=[shiny]; }; shinyNORRRM = derive2 { name="shinyNORRRM"; version="0.8.6"; sha256="1cb6n3bwqfygqc0p25z62nmrrns6hm2by4chi45sl898is5hkhdn"; depends=[pracma shiny shinythemes shinyWidgets Ternary]; }; @@ -17958,10 +18241,10 @@ in with self; { shinyTime = derive2 { name="shinyTime"; version="1.0.3"; sha256="04vpq9fpp1iwila9l33cljig3hfyw7lsg03fqny0q260ka8chhgz"; depends=[htmltools shiny]; }; shinyToastify = derive2 { name="shinyToastify"; version="2.0.0"; sha256="0ipqwgl89pjiycwg78p0db45lbzry989kn6aqjsf79lpvghnk5qs"; depends=[fontawesome htmltools reactR shiny]; }; shinyTree = derive2 { name="shinyTree"; version="0.3.1"; sha256="0krffsgdv99cvyzdspb9l7cdnq1vibsbmpd4w48r5pi4v8jbvfj6"; depends=[htmlwidgets jsonlite promises shiny stringr]; }; - shinyWidgets = derive2 { name="shinyWidgets"; version="0.8.3"; sha256="02z8fwvnmi6lacqi6ryxssm1w3mh4vfphjrp3v1d6dij3s3l6z0q"; depends=[anytime bslib htmltools jsonlite rlang sass shiny]; }; + shinyWidgets = derive2 { name="shinyWidgets"; version="0.8.6"; sha256="1dv0bwp3rxc1c3n05sczvshg5i9mffqxb61r1z2radwmj5c28g46"; depends=[anytime bslib htmltools jsonlite rlang sass shiny]; }; shinyXYpad = derive2 { name="shinyXYpad"; version="0.2.0"; sha256="08acqbh41379p2jh0wc30m4h7rlx81cf578qc604jxnsvilvjr9n"; depends=[shiny]; }; shinyaframe = derive2 { name="shinyaframe"; version="1.0.1"; sha256="1flhgsm4q7p5acb41v73pf8ni92y9dwdppxjb9czlz1sxwf03p1s"; depends=[htmltools htmlwidgets shiny]; }; - shinyalert = derive2 { name="shinyalert"; version="3.0.0"; sha256="1gws8vshnqngm55rnw22qjlqsn9d240p734dnjvsv96d22b8bsnl"; depends=[htmltools knitr shiny uuid]; }; + shinyalert = derive2 { name="shinyalert"; version="3.1.0"; sha256="1gips6hr8h8njv2hx1dv0nqcmihjknqkkyydhff9cgfgs242g27f"; depends=[htmltools shiny uuid]; }; shinyanimate = derive2 { name="shinyanimate"; version="0.4.0"; sha256="1n8nf42imw0qcgdh1h0yhqid2g688cxrp22npj3z1mnynmjvsxp9"; depends=[shiny]; }; shinyauthr = derive2 { name="shinyauthr"; version="1.0.0"; sha256="0apaqjkxpr96kx9indl0pifk5y75gdx5npfcvxfg5k2crpx9vmxk"; depends=[dplyr glue rlang shiny shinyjs sodium]; }; shinybrms = derive2 { name="shinybrms"; version="1.8.0"; sha256="0qsmgswkk7l7nn4sabisg4gwiqiicjdxi0g96778ad4d4prnx107"; depends=[brms rlang rstan shiny]; }; @@ -17970,7 +18253,7 @@ in with self; { shinycssloaders = derive2 { name="shinycssloaders"; version="1.0.0"; sha256="0r3xm273lhdhzbs2mkgw1m2kwb7z1dh1pzya8yxy5vacda1l2ikl"; depends=[digest glue shiny]; }; shinycustomloader = derive2 { name="shinycustomloader"; version="0.9.0"; sha256="1klx71vr26g0gjf6hbiia1qidqii5d467i1sdjvlrg1hxdcggqff"; depends=[glue shiny]; }; shinydashboard = derive2 { name="shinydashboard"; version="0.7.2"; sha256="0hrqkwlpb8rnmp5j74p134g4c4cl16icmwc2ip6k1634fa2y8vm5"; depends=[htmltools promises shiny]; }; - shinydashboardPlus = derive2 { name="shinydashboardPlus"; version="2.0.3"; sha256="10sdb1vddx2ij867pqijr63l4233hw1vnn7mzbs0z23g77x8ra29"; depends=[fresh htmltools lifecycle shiny shinydashboard waiter]; }; + shinydashboardPlus = derive2 { name="shinydashboardPlus"; version="2.0.4"; sha256="11ckx8il1v4jk26ss0bylk73xb5bh3xd2d5421i5s8wlxlwd0z5q"; depends=[fresh htmltools lifecycle shiny shinydashboard waiter]; }; shinydbauth = derive2 { name="shinydbauth"; version="1.0.0.1"; sha256="04f8cq5vismbl05cvkd4kh5h1bzank5fhsgfmxdqwpy3jp68a1kf"; depends=[billboarder DT glue htmltools openssl R_utils R6 scrypt shiny yaml]; }; shinydisconnect = derive2 { name="shinydisconnect"; version="0.1.1"; sha256="1yhppfx8jpvz48iwxnimcwqhj02vqjrfmh4z5rdn9d35p51c8zjc"; depends=[checkmate glue htmltools shiny]; }; shinydlplot = derive2 { name="shinydlplot"; version="0.1.4"; sha256="1gxr98p2zyvwa6q8a80bz4h1pkgbdn58cwqbd19dbn4liszfxsy8"; depends=[htmltools htmlwidgets plotly shiny shinyBS shinyjs]; }; @@ -17982,28 +18265,28 @@ in with self; { shinyhttr = derive2 { name="shinyhttr"; version="1.1.0"; sha256="1snrl7bg1bc5jxqs1c5a2ir6qnf1nq576aigk19k0ms4gb9hh66m"; depends=[httr shinyWidgets]; }; shinyjqui = derive2 { name="shinyjqui"; version="0.4.1"; sha256="135gwz7syyb6pbn0lkvmq0v1c6r1zivavnqhi1rnzbbzlysi27v1"; depends=[htmltools htmlwidgets jsonlite rlang shiny]; }; shinyjs = derive2 { name="shinyjs"; version="2.1.0"; sha256="1id9gsrkr28xl80a8794in17rxmmz06zqvd5hlns7mqz3fzhrhky"; depends=[digest jsonlite shiny]; }; - shinylight = derive2 { name="shinylight"; version="1.1.2"; sha256="0y2gmi8y5b595dca1sch9mzhq2mbbj7mv879md0ajc16ycfi17rp"; depends=[httpuv jsonlite later]; }; + shinylight = derive2 { name="shinylight"; version="1.2"; sha256="0kqblyxzdknnnhi8ma4aviqrsysnfarz5pfqjzs86wsrp1ghplzj"; depends=[httpuv jsonlite later]; }; shinylive = derive2 { name="shinylive"; version="0.1.1"; sha256="1hsvcsbzrzv0gb99mfc02sd77mlwcxjqzzr5v2jfr5ajq33q3ffb"; depends=[archive brio fs httr2 jsonlite progress rappdirs rlang]; }; shinyloadtest = derive2 { name="shinyloadtest"; version="1.1.0"; sha256="0684p9anbc3qdn4rqkxp33nm0d04zb264b3blwa23pa5akis2klq"; depends=[curl dplyr ggplot2 httpuv jsonlite magrittr R6 rlang scales stringr svglite vroom websocket xml2]; }; shinylogs = derive2 { name="shinylogs"; version="0.2.1"; sha256="1w19z0zw2k3ni7ckg04q7j0jx4k3cm490z0qccj1smq01wn3czjj"; depends=[anytime bit64 data_table digest htmltools jsonlite nanotime shiny]; }; shinymanager = derive2 { name="shinymanager"; version="1.0.410"; sha256="0nl672dgwj34wm4i3pxk28lv6qw9xsgg3hm0h78q3zdgk8a33kdn"; depends=[billboarder DBI DT htmltools openssl R_utils R6 RSQLite scrypt shiny]; }; shinymaterial = derive2 { name="shinymaterial"; version="1.2.0"; sha256="0nqakim0cx722sydbv12kgva1nis7h2i0lrvi9c0h54733x7lbza"; depends=[jsonlite sass shiny]; }; shinymeta = derive2 { name="shinymeta"; version="0.2.0.3"; sha256="1lizg5sjg0f2axr9vk8z4w43lbyim83gd4dzx91dygknv3kgyp89"; depends=[callr fastmap fs htmltools rlang shiny sourcetools styler]; }; + shinymgr = derive2 { name="shinymgr"; version="1.1.0"; sha256="000r7vh8myc10jxna5h65kjx1sqw45aqjj24brls5vnvz5rg4i3w"; depends=[DBI reactable renv RSQLite shiny shinydashboard shinyjs]; }; shinymodels = derive2 { name="shinymodels"; version="0.1.1"; sha256="1ydj4ny94y77akbsq0asaz29s3hnkb237icbxsnrh18z2wnyhhll"; depends=[dplyr DT generics ggplot2 glue htmltools magrittr parsnip plotly purrr rlang scales shiny shinydashboard tidyr tidyselect tune yardstick]; }; shinyobjects = derive2 { name="shinyobjects"; version="0.2.0"; sha256="0fg5gyssia2fqar635vrqgfwpfrk4pqachsgg10y13ljp09lcdm3"; depends=[dplyr glue knitr magrittr pander purrr readr rlang rstudioapi shiny stringr styler tibble tidyr]; }; shinypanel = derive2 { name="shinypanel"; version="0.1.5"; sha256="003sp6x78mwjf5hl8m4gqwyxlg3zilli6932l7k82s1hbaksar1j"; depends=[htmltools jsonlite shiny shinyBS shinyjs]; }; shinypanels = derive2 { name="shinypanels"; version="0.5.0"; sha256="1rslz9wl3gx11dm6il77j4k5swxvcfy5mf0zffbs4zk8xjgpzzj6"; depends=[glue htmltools shiny shinyjs]; }; shinypivottabler = derive2 { name="shinypivottabler"; version="1.2"; sha256="0qjk2xgbcl60aqva5jn0bbrzmcql8kaqs1air2xyjbfj73axsrig"; depends=[colourpicker htmltools openxlsx pivottabler shiny]; }; shinyquiz = derive2 { name="shinyquiz"; version="0.0.1"; sha256="0d4n15dx2kizl37gvmgwc49b0n99x59xp168an8n3k0h8qzdcyd4"; depends=[cli fontawesome glue htmltools purrr reactable scales shiny shinyjs stringi stringr]; }; - shinyr = derive2 { name="shinyr"; version="0.3.0"; sha256="1r4xpb5x0711jbh4v8wkfhgg3s7l1sxqr6i90wsh0k0q3501fs2i"; depends=[caret corrplot dplyr e1071 knitr nnet plotly randomForest RColorBrewer shiny shinydashboard tm wordcloud]; }; shinyrecipes = derive2 { name="shinyrecipes"; version="0.1.0"; sha256="1b4l27qsl1lpssh3jv1pqmw2mq8hanfj0m269yp5618nd5nxd2ck"; depends=[dplyr DT esquisse miniUI purrr recipes rstudioapi shiny shinyglide shinyWidgets sortable stringr tidyr]; }; shinyreforms = derive2 { name="shinyreforms"; version="0.0.1"; sha256="1g1blc57c6zkca0m52bqkw8jwgpplabns07x1cwkk46dmv6sgqci"; depends=[htmltools R6 shiny]; }; shinyscreenshot = derive2 { name="shinyscreenshot"; version="0.2.1"; sha256="1pa1fc0yhsdsc2glyj77zsbpl8qv9x2i7qfha7s77k1zif74px88"; depends=[base64enc htmltools jsonlite shiny uuid]; }; shinyservicebot = derive2 { name="shinyservicebot"; version="0.1.0"; sha256="18xbggiai6ssyl3q0nqhnszxb7zlbffaw0iy3r7vbzswzqx522la"; depends=[digest htmltools htmlwidgets shiny]; }; shinystan = derive2 { name="shinystan"; version="2.6.0"; sha256="0afm703zriyqprz1zvypir80lq2ylfff3qvj5i7p9n365mm8b150"; depends=[bayesplot colourpicker DT dygraphs ggplot2 gridExtra gtools markdown reshape2 rstan shiny shinyjs shinythemes threejs xtable xts]; }; shinysurveys = derive2 { name="shinysurveys"; version="0.2.0"; sha256="01bj0g8r71jng03psw9dcjann78divy2xr5yn6y1pa82d96s46b5"; depends=[htmltools jsonlite sass shiny]; }; - shinytest = derive2 { name="shinytest"; version="1.5.4"; sha256="16nb6xyk941a8vxk79416j7f4165gwf84w5a64i0rcaxyx5i66b6"; depends=[assertthat callr crayon debugme digest htmlwidgets httpuv httr jsonlite parsedate pingr R6 rematch rlang rstudioapi shiny testthat webdriver withr]; }; - shinytest2 = derive2 { name="shinytest2"; version="0.3.1"; sha256="0d0x9hl6vmf7wc5nbpb9rz0wydxvr6z5sl0hkn9g7d32rl6rwq36"; depends=[callr checkmate chromote cpp11 crayon ellipsis fs globals httr jsonlite pingr R6 rlang rmarkdown shiny testthat withr]; }; + shinytest = derive2 { name="shinytest"; version="1.6.1"; sha256="0h9ciivic0fg7w5yq9cycdj1fh4zhdg4fz1gkn2fdx87c0d5j7a4"; depends=[assertthat callr crayon debugme digest htmlwidgets httpuv httr jsonlite parsedate pingr R6 rematch rlang rstudioapi shiny testthat webdriver withr]; }; + shinytest2 = derive2 { name="shinytest2"; version="0.3.2"; sha256="1qrnh9cfgi67szv1yiaqkv10vf1r70i9l88h6dssgiv1q2fw8yx1"; depends=[callr checkmate chromote cpp11 crayon fs globals httr jsonlite pingr R6 rlang rmarkdown shiny testthat withr]; }; shinythemes = derive2 { name="shinythemes"; version="1.2.0"; sha256="0qr9bfxw8afxns44i2j4msignf6g5qb2nzpay2lpv343rrlqbmip"; depends=[shiny]; }; shinytitle = derive2 { name="shinytitle"; version="0.1.0"; sha256="1k05s2fmqvz3drnqkxcpxvvmn0sisdqivg7i4x5c6649b97rsbsx"; depends=[shiny]; }; shinytoastr = derive2 { name="shinytoastr"; version="2.2.0"; sha256="1zcf4ya9anlq6n97iq0b86ybcqbbd2h66vrr41m80zvlkav3z46z"; depends=[shiny]; }; @@ -18015,7 +18298,7 @@ in with self; { shoredate = derive2 { name="shoredate"; version="1.1.1"; sha256="1zhfaj2wqpmi3ar71czbss32k00sqv1inj6rvj9kqhzshsi0w3zv"; depends=[ggplot2 ggrepel ggridges ggspatial sf terra]; }; shortIRT = derive2 { name="shortIRT"; version="0.1.3"; sha256="1z2db31r332dayaprdjrm9r3yihj7jnpk7j106m74q5ckwsaw859"; depends=[dplyr ggplot2 TAM]; }; shortcuts = derive2 { name="shortcuts"; version="1.4.0"; sha256="0y77napfz1v3s667cmyn8357xg5lncbw1hc3hm5kra6nalhq1jps"; depends=[rstudioapi]; }; - shorts = derive2 { name="shorts"; version="3.1.0"; sha256="08xya7v51y3zbd889fa011rykf0gd78cjx1c5l7y20avihmbw0vl"; depends=[ggplot2 LambertW minpack_lm purrr tidyr]; }; + shorts = derive2 { name="shorts"; version="3.2.0"; sha256="1ajqvm6y5djdjh5prci31hyv1ilycn1vf5gniq92gxqhzab7bnxc"; depends=[ggplot2 LambertW minpack_lm purrr tidyr]; }; shotGroups = derive2 { name="shotGroups"; version="0.8.2"; sha256="0m3n3ja6ny45rdd13s9f7nm1ml3p3y7nisbhfg0fj369wym95r1p"; depends=[boot coin CompQuadForm KernSmooth robustbase]; }; showimage = derive2 { name="showimage"; version="1.0.0"; sha256="1c0x3iqjdjsz3cdhc02b3qm2pwxjr1q2k87jwvxj9lnzzw81f1pl"; depends=[png]; }; showtext = derive2 { name="showtext"; version="0.9-7"; sha256="12a8j87ca39fd8vn9ixzfgkbffz8ajyslhsx2hqjry1gzbk864i5"; depends=[showtextdb sysfonts]; }; @@ -18033,7 +18316,7 @@ in with self; { sidier = derive2 { name="sidier"; version="4.1.0"; sha256="0zayhvhaq0q00rpgy0z01rhf3lcc3791klc8b30pdj627cl9xj01"; depends=[ape ggmap ggplot2 gridBase igraph network]; }; sidrar = derive2 { name="sidrar"; version="0.2.9"; sha256="1q3imj1nfjrgs9hxwwzf9bq7pfcyphjj8967mmkwgdyakkpxrzz3"; depends=[httr magrittr rjson rvest stringr xml2]; }; siebanxicor = derive2 { name="siebanxicor"; version="1.0.0"; sha256="0bnpqqhqvqq9kxvzljzp4d5aw9drh78cwyxyqzdvshijl7mmqjwc"; depends=[httr jsonlite]; }; - sievePH = derive2 { name="sievePH"; version="1.0.4"; sha256="0lrpk2dx0n8cdgwrshnw41xsg2gd6qbgn1bddvzifnibh082gb27"; depends=[ggplot2 ggpubr scales survival]; }; + sievePH = derive2 { name="sievePH"; version="1.1"; sha256="0bzf7k3qk8ih9qvkr196wcy8b6wq5q6x6cn311z312713n9jly10"; depends=[ggplot2 ggpubr np plyr Rcpp RcppArmadillo scales survival]; }; sievetest = derive2 { name="sievetest"; version="1.2.3"; sha256="17qrm7axvlr2yzp8brbibp26f8qdpqm85hc2kjzxm5zqwfvd6dfs"; depends=[]; }; sift = derive2 { name="sift"; version="0.1.0"; sha256="030vv2rha5d20045bwsp6ihdcgiw9glnchyahpzwym3m6fnkg0y5"; depends=[cpp11 dplyr glue pastecs purrr rlang tibble tidyr tidyselect]; }; sig = derive2 { name="sig"; version="0.0-6"; sha256="02narc84by24rldna6qi8vyygxfarhbaddv1kdmb1ywhbsq86597"; depends=[]; }; @@ -18041,7 +18324,7 @@ in with self; { sigQC = derive2 { name="sigQC"; version="0.1.23"; sha256="0fpci6l0h6047qq7igwmm38rma768l706xfmfdfn1qqgkm5sv0x8"; depends=[biclust circlize class cluster ComplexHeatmap fmsb gplots gridGraphics GSVA KernSmooth lattice MASS mclust moments nnet]; }; sigclust = derive2 { name="sigclust"; version="1.1.0.1"; sha256="1q3jdalm7cbsl78gssl3jsifh56wyczrlx2ya4p74r4fb6sv9kga"; depends=[]; }; sigmajs = derive2 { name="sigmajs"; version="0.1.5"; sha256="1d26llpgnj687b8rwgbyhw88zakp334n4a9gabf72qwrg4awm1v5"; depends=[crosstalk dplyr htmltools htmlwidgets igraph jsonlite magrittr purrr scales shiny]; }; - sigminer = derive2 { name="sigminer"; version="2.3.0"; sha256="1i6qf5g58gi857szlpiqkcv5rfskh2qv53ywx7bxl3hzgy9178lb"; depends=[cli cowplot data_table dplyr furrr future ggplot2 ggpubr maftools magrittr NMF purrr Rcpp rlang tidyr]; }; + sigminer = derive2 { name="sigminer"; version="2.3.1"; sha256="0fwmq6p6qyz5pq1vhh26ddrivcqaqnfv1bsnhzfplz1glmv6r0xj"; depends=[cli cowplot data_table dplyr furrr future ggplot2 ggpubr maftools magrittr NMF purrr Rcpp rlang tidyr]; }; sigmoid = derive2 { name="sigmoid"; version="1.4.0"; sha256="067ygikaaniikig1ypd6ry187981xar7i539917zf0avszshisxq"; depends=[]; }; signal = derive2 { name="signal"; version="1.8-0"; sha256="1126p631zm0wc4h9ghqai5yb9vklpz676fygb0d0aavs2raaijw9"; depends=[MASS]; }; signalHsmm = derive2 { name="signalHsmm"; version="1.5"; sha256="1d4v6cbvcbi8pb5zmn58s01h3jb0kv7yr7qvcnx4p2v82knvhik7"; depends=[Rcpp seqinr shiny]; }; @@ -18055,10 +18338,11 @@ in with self; { siie = derive2 { name="siie"; version="0.4.0"; sha256="1i095ys39q9p9bz12ia93k45ayl8cip956vh5wylw05m82vms2f0"; depends=[data_table]; }; siland = derive2 { name="siland"; version="3.0.2"; sha256="1dhjwl8akkziiax7a369rbxy8bmmnggnnd44v3zj1d2fqskskvdg"; depends=[fasterize fields ggforce ggplot2 lme4 raster reshape2 sf sp]; }; silicate = derive2 { name="silicate"; version="0.7.1"; sha256="193n0gh2kg5900si1m94cliyh0fbmp9dybs17vl1xxn34pg9c9s9"; depends=[crsmeta decido dplyr gibble gridBase magrittr purrr rlang tibble unjoin]; }; + sim_BA = derive2 { name="sim.BA"; version="0.1.0"; sha256="0rwr77n7bg5w1f8ikz88lzm4kq32nxs4h2zr2fqwrwwwwp8paixf"; depends=[chk cobalt ggplot2 pbapply rlang scales survival]; }; sim1000G = derive2 { name="sim1000G"; version="1.40"; sha256="1avq6xfc34izavvp9vb5ccc2b9nc4m7cwr06ygnsmpgwi5nswbb8"; depends=[hapsim MASS readr stringr]; }; sim2Dpredictr = derive2 { name="sim2Dpredictr"; version="0.1.1"; sha256="14v35ngwj27j2r4mszwjz1dnk4iydakk5qf4z0swwi931q1jiphc"; depends=[dplyr MASS matrixcalc Rdpack spam tibble]; }; simCAT = derive2 { name="simCAT"; version="1.0.0"; sha256="1ngdfzackzm82v7qs8809w3k70hayzan4zsvf061w04wvlhgzllp"; depends=[dplyr mirt mirtCAT shiny shinycssloaders]; }; - simDAG = derive2 { name="simDAG"; version="0.1.1"; sha256="0lh2q4zb88rpvh9bzlrhgjdjsh5v1pdjw9clzli7nrb90d2317l3"; depends=[data_table dplyr Rfast rlang]; }; + simDAG = derive2 { name="simDAG"; version="0.1.2"; sha256="18zbqpvndblrqmdz7hsbc0kf1w8v6a75z4x9yr95f3saazirrj6p"; depends=[data_table igraph Rfast rlang]; }; simDNAmixtures = derive2 { name="simDNAmixtures"; version="1.0.1"; sha256="17865ihl8bv3nqhsqy3dpi82x4q1q5dzff6r3qygdnmh0ymhr7d2"; depends=[dplyr pedtools readr]; }; simET = derive2 { name="simET"; version="1.0.3"; sha256="0l3mk2n1ik9xg660js97n03gix5im2f42q2r7hs9gvhs0g2552kp"; depends=[dplyr ggplot2 ggpmisc ggpubr lubridate magrittr plyr rlang stringr tidyr]; }; simEd = derive2 { name="simEd"; version="2.0.1"; sha256="1r4ahsfkrymhachdcjj7nvdiplxjla0jlsay3bi04n6rrl758rny"; depends=[rstream shape]; }; @@ -18073,10 +18357,10 @@ in with self; { simPH = derive2 { name="simPH"; version="1.3.13"; sha256="086060f78f1dmpa6cyhx160blchckplw04gs6997f1hwzswci2l2"; depends=[data_table dplyr ggplot2 gridExtra lazyeval MASS mgcv quadprog stringr survival]; }; simPop = derive2 { name="simPop"; version="2.1.3"; sha256="0rgaalkaxxh92yryzd39qnpahzi7d2bqnnsgx4i5rai2vrj1hqfi"; depends=[colorspace data_table doParallel e1071 EnvStats fitdistrplus foreach lattice MASS matrixStats nnet partykit ranger Rcpp RcppArmadillo vcd VIM wrswoR xgboost]; }; simRestore = derive2 { name="simRestore"; version="1.1.4"; sha256="1psw58k5i7vj7a49cski28dxwryi6qk167w2v003ja209pdpbfx8"; depends=[Rcpp shiny subplex tibble]; }; - simStateSpace = derive2 { name="simStateSpace"; version="1.2.0"; sha256="1da0zsyqpnpnndz10yk0ccfhmldg263qr83760zf3pa14fzcxb7s"; depends=[Rcpp RcppArmadillo]; }; + simStateSpace = derive2 { name="simStateSpace"; version="1.2.1"; sha256="1151r60vrb3b9crjb77a4aba6mzv13wq5awd0hrh8684h6pz9f76"; depends=[Rcpp RcppArmadillo]; }; simTargetCov = derive2 { name="simTargetCov"; version="1.0.1"; sha256="0gdqqwg9i2hga6l4s5x7wbbsm20b3sgwrci1g6hc04x1h9aawiw2"; depends=[MASS]; }; simTool = derive2 { name="simTool"; version="1.1.7"; sha256="0q093dlfj23zq3w4schn1ycff79vgzr2s3wgbz2qz4s3b7fddk70"; depends=[dplyr purrr tibble tidyr vctrs]; }; - simaerep = derive2 { name="simaerep"; version="0.4.3"; sha256="1s13d8f4izwzrav7rhmx3s8nv36m5kwz806r85k7gqn24lnaa5ra"; depends=[cowplot dplyr forcats furrr ggplot2 knitr magrittr progressr purrr RColorBrewer rlang stringr tibble tidyr]; }; + simaerep = derive2 { name="simaerep"; version="0.5.0"; sha256="1r0hgf8i7grpiww42l28az4pr81s998ghyrmbrva8ap27vj3r269"; depends=[cowplot dplyr forcats furrr ggplot2 knitr magrittr progressr purrr RColorBrewer rlang stringr tibble tidyr]; }; simboot = derive2 { name="simboot"; version="0.2-8"; sha256="1kw2sy13vsys2rs0ss7016y8k8ykcbp6v959ylbp86dl9bnh3vpr"; depends=[boot mvtnorm]; }; simcausal = derive2 { name="simcausal"; version="0.5.6"; sha256="0r87i5m8sd9bf8ddlkgq9dl0pglhxl9pj5b0vx79va9r5wb55vgk"; depends=[assertthat data_table igraph Matrix R6 stringr]; }; simcdm = derive2 { name="simcdm"; version="0.1.2"; sha256="1pwh1ial7naanqpxhlsn6ij2i35xnj8hwyhvipzc7csd5l5ss5z1"; depends=[Rcpp RcppArmadillo]; }; @@ -18133,11 +18417,11 @@ in with self; { simsem = derive2 { name="simsem"; version="0.5-16"; sha256="0scjb308pb8ivy5blbk1wj9d1yxcqknhvh95a3728crfq2xcqnh0"; depends=[lavaan]; }; simsl = derive2 { name="simsl"; version="0.2.1"; sha256="12dc9lcy11g1yynycvcqm62npq0v13bg6fnykb5m9ijwga4x51il"; depends=[mgcv]; }; simstandard = derive2 { name="simstandard"; version="0.6.3"; sha256="1l1vny3csrr7krfpn25rzysmwjfv6mclf51y3mq02cimcwq9fzcy"; depends=[lavaan magrittr mvtnorm purrr rlang tibble]; }; - simstudy = derive2 { name="simstudy"; version="0.7.1"; sha256="0917x93dy3c83b0kfbsgx7qfilwik0s2fgmjkc6xmj4d7zfbsbyf"; depends=[backports data_table fastglm glue mvnfast pbv Rcpp]; }; + simstudy = derive2 { name="simstudy"; version="0.8.0"; sha256="1xdqk5jikhvxxd78frfj3s3m7aigkhkavzryifhzv47l22rmpkcb"; depends=[backports data_table fastglm glue mvnfast pbv Rcpp]; }; simsurv = derive2 { name="simsurv"; version="1.0.0"; sha256="16b2a3br107hy2fc0vann9wf5h9kb5j76baa37g1sfc0h19kg6kr"; depends=[]; }; simtimer = derive2 { name="simtimer"; version="4.0.0"; sha256="1c5017xmh4767d75k4rs1pssyn7p5w41bcsjjmwk4c9g6w1jgx1w"; depends=[]; }; simtrait = derive2 { name="simtrait"; version="1.1.3"; sha256="0zwas19q7lmmmznv44km1f9wj4vq34hl5zlakfs98lkp7f0z29nx"; depends=[PRROC]; }; - simtrial = derive2 { name="simtrial"; version="0.3.2"; sha256="0d0fvrlbpj4zq32ifx7p1wd1h1xg83lkvl3mp92vck1y0ap1yd2f"; depends=[data_table doFuture foreach future mvtnorm Rcpp survival]; }; + simtrial = derive2 { name="simtrial"; version="0.4.1"; sha256="1gsd7ykqws7y5ggblbjjrg3yid9fj7samrnbk7fb4dnknvv8lgls"; depends=[data_table doFuture foreach future mvtnorm Rcpp rlang survival]; }; simts = derive2 { name="simts"; version="0.2.2"; sha256="12v6djqij8w0vy25pndri4kng7zq7bncvbg9h28vg1m8sk3nlfc4"; depends=[broom dplyr magrittr purrr Rcpp RcppArmadillo robcor scales tidyr]; }; simuclustfactor = derive2 { name="simuclustfactor"; version="0.0.3"; sha256="0yjcknqx44zjzk1ch8bnfbpf7dg34nwdhsmbnhyskzc67022g470"; depends=[Rdpack]; }; simukde = derive2 { name="simukde"; version="1.3.0"; sha256="0mpj8pfrlagc97v53idsiypjcpbaj07y6klanph5lkiwzsgbz8sv"; depends=[ks MASS mvtnorm]; }; @@ -18147,7 +18431,7 @@ in with self; { simule = derive2 { name="simule"; version="1.3.0"; sha256="0jzyk1r2jfs7qivmy9x44c5bagy55jpy3hf0xpl9xnk409c3y2wd"; depends=[igraph lpSolve pcaPP]; }; sinaplot = derive2 { name="sinaplot"; version="1.1.0"; sha256="0zfq6l8wjvdj7rndsfyh0a2xjlxmn2ij1q50hg3xjfpwrjxcsck8"; depends=[plyr]; }; sinar = derive2 { name="sinar"; version="0.1.0"; sha256="0dywgqmvbrsygyvnln2mc5p6gaxvphr5byx7hkf0nkil54f2jzdf"; depends=[MASS numDeriv]; }; - sindyr = derive2 { name="sindyr"; version="0.2.3"; sha256="0dk7zwj5hdr7fcxhdj9klml11sciyaj0v59dfgvnhhkxndwwdbrr"; depends=[arrangements crqa igraph matrixStats plot3D pracma]; }; + sindyr = derive2 { name="sindyr"; version="0.2.4"; sha256="1jhy7p5f4hphvl05gibzqva2szzman62y2j5irxk86fmwj9kqajc"; depends=[arrangements igraph matrixStats pracma]; }; sinew = derive2 { name="sinew"; version="0.4.0"; sha256="14ccm7i3zkjmj077b9ba2557n4v77k7646vylnrd22f20dzr52ba"; depends=[cli crayon rematch2 rstudioapi sos stringi yaml]; }; singR = derive2 { name="singR"; version="0.1.2"; sha256="1xfmgavcm63imc5a57vk9x3yvdsf2y9599ipmimivdi6q0cxv7bc"; depends=[clue gam ICtest MASS Rcpp RcppArmadillo]; }; singcar = derive2 { name="singcar"; version="0.1.5"; sha256="0ixarjv8jxxpnc6imkk0gisjl0xv0bd9ah7y1sxdj2c8kb9d8k3n"; depends=[CholWishart MASS withr]; }; @@ -18164,6 +18448,7 @@ in with self; { sisal = derive2 { name="sisal"; version="0.48"; sha256="1fh35ndra58dryw222ng7ys3gx1izyk5789k30lyd4n8wqy6sjjd"; depends=[boot digest lattice mgcv R_matlab R_methodsS3]; }; sisireg = derive2 { name="sisireg"; version="1.1.1"; sha256="1jw1nl8l7kh5fa3hh7zh418brck6zayhhqm50nqhbghlmjs7y67i"; depends=[raster reticulate zoo]; }; sistec = derive2 { name="sistec"; version="0.2.0"; sha256="0y43anin9vybiivf3jrxg19i9z4smmhhjvp52gci6icpn839kr8x"; depends=[dplyr openxlsx rlang shiny stringi stringr]; }; + sisti = derive2 { name="sisti"; version="0.0.1"; sha256="020m38k1sndrhz42dg5w12x2gjyhxiissm07v0y4ps7wvqlp0hpa"; depends=[tibble]; }; sistmr = derive2 { name="sistmr"; version="0.1.1"; sha256="08kajkb0ypbzcyxs9wv6mdz51r7zj01k2ahskidhlqww80rd407r"; depends=[BlandAltmanLeh dplyr ggbeeswarm ggplot2 ggrepel rlang scales]; }; sitar = derive2 { name="sitar"; version="1.4.0"; sha256="14qc5qy21qyj4gml0gwfn8izbsmzwy30ddc7mazhszi487jrcrp0"; depends=[dplyr forcats ggplot2 glue magrittr nlme purrr rlang rsample tibble tidyr]; }; sitepickR = derive2 { name="sitepickR"; version="0.0.1"; sha256="1cqvf4d2jpav53v7h7vzknm8cbr5kqk1djqkhmjrwv2zjnx3fg97"; depends=[data_table dplyr ggplot2 magrittr MatchIt reshape2 sampling scales stringr tidyr tidyselect]; }; @@ -18172,45 +18457,48 @@ in with self; { sitools = derive2 { name="sitools"; version="1.4"; sha256="0c0qnvsv06g6v7hxad96fkp9j641v8472mbphvaxa60k3xc7ackb"; depends=[]; }; sitree = derive2 { name="sitree"; version="0.1-14"; sha256="0b2dzws3n9q5ss8bna8prq0r0xg5ngqgkrwg92q51r9cv83vw1rf"; depends=[data_table ggplot2]; }; sitreeE = derive2 { name="sitreeE"; version="0.0-8"; sha256="0jwxca8y0nn1aqx4c6gikgf31nb4dll543m0akd4jmqx6fc450kd"; depends=[data_table sitree]; }; - sits = derive2 { name="sits"; version="1.4.2-1"; sha256="135qk50vbnyxnl2bkxwz00j4z36ynhiidm1yyfjvssxq3i3m6878"; depends=[dplyr gdalUtilities lubridate purrr Rcpp RcppArmadillo rstac sf showtext slider sysfonts terra tibble tidyr torch yaml]; }; + sits = derive2 { name="sits"; version="1.5.0"; sha256="0ym6dkw1nvijvhyskiwp9m4pys9gmsxqhjwmqs6n670mxfnqibss"; depends=[dplyr gdalUtilities lubridate purrr Rcpp RcppArmadillo rstac sf showtext slider sysfonts terra tibble tidyr torch yaml]; }; sivs = derive2 { name="sivs"; version="0.2.10"; sha256="1mf881yy1f6s4f6bx4p5010f45pg09lww3npkkp1s11zpawgmdjq"; depends=[doParallel foreach glmnet pROC varhandle]; }; sizeMat = derive2 { name="sizeMat"; version="1.1.2"; sha256="1vbndadsn80ddrg471vp1qxf0gan38w6dkjk1p2npvfb47wdjj2h"; depends=[MASS matrixStats MCMCpack]; }; - sjPlot = derive2 { name="sjPlot"; version="2.8.15"; sha256="10lvn8dnckpjjpapmf0d2zwjkzjvs4iiswd3rmijzviz4ichhxjs"; depends=[bayestestR datawizard dplyr ggeffects ggplot2 insight knitr MASS parameters performance purrr rlang scales sjlabelled sjmisc sjstats tidyr]; }; + sjPlot = derive2 { name="sjPlot"; version="2.8.16"; sha256="093nmn1gq8i4kr5nhwby883rxpdiyb959shqvfnvplwcnnv762ji"; depends=[bayestestR datawizard dplyr ggeffects ggplot2 insight knitr MASS parameters performance purrr rlang scales sjlabelled sjmisc sjstats tidyr]; }; sjSDM = derive2 { name="sjSDM"; version="1.0.5"; sha256="1qrslxrminbzvqkcngx875kkbaj9f2wd8svdwsd0706v5w72pisg"; depends=[abind checkmate cli crayon ggplot2 ggtern mathjaxr Metrics mgcv mvtnorm reticulate rstudioapi]; }; sjdbc = derive2 { name="sjdbc"; version="1.6.1"; sha256="0cz5qc5lsipd3nlkzj8j03xmpzxp52c3q5av8pr7fm3vsdclawfk"; depends=[rJava]; }; sjlabelled = derive2 { name="sjlabelled"; version="1.2.0"; sha256="1va86q5wddyvqgdpy8d0an2c7v1qbb4hpn0ai6y1v5v1ff87w73k"; depends=[datawizard insight]; }; - sjmisc = derive2 { name="sjmisc"; version="2.8.9"; sha256="1gzkq95ckxr0vhrzggflzli9hs7zr8c0yym9zn1wf74yrr0mgc3q"; depends=[dplyr insight magrittr purrr rlang sjlabelled tidyselect]; }; - sjstats = derive2 { name="sjstats"; version="0.18.2"; sha256="0a1y6bqyvgs0avzasr8g6vwcxcnj4d9g0rfz2qiznwadpjzqw66h"; depends=[bayestestR broom datawizard dplyr effectsize emmeans insight lme4 magrittr MASS modelr parameters performance purrr rlang sjlabelled sjmisc tidyr]; }; + sjmisc = derive2 { name="sjmisc"; version="2.8.10"; sha256="12y5aa820h95dbak9zd2rbg1hc0636b2dpg0mn9mkb76a4ssnr1d"; depends=[datawizard dplyr insight magrittr purrr rlang sjlabelled tidyselect]; }; + sjstats = derive2 { name="sjstats"; version="0.19.0"; sha256="07qv32gnrhrl21zgj1xp1gqdqjn6ax1nf40s11nmpag8r0xgvqnk"; depends=[datawizard effectsize insight parameters performance]; }; sjtable2df = derive2 { name="sjtable2df"; version="0.0.3"; sha256="1vb2wr122pfn6qald36mn1dkz6gygp81skl11halrwa7cvxwkl7z"; depends=[data_table kableExtra magrittr rlang rvest xml2]; }; skater = derive2 { name="skater"; version="0.1.2"; sha256="1hw6hk2v6jxhv86dzjpqnakkrbp2k7gayg2zffpyd2z8l4mpgmxd"; depends=[corrr dplyr kinship2 magrittr purrr readr rlang tibble tidyr]; }; skedastic = derive2 { name="skedastic"; version="2.0.2"; sha256="1ln0scwgvpif610jgwdl0rzlx41i8w2ri1vaq0kl11vg69xp5105"; depends=[bazar broom caret CompQuadForm inflection MASS Matrix mgcv osqp pracma quadprog quadprogXT Rdpack Rfast ROI ROI_plugin_qpoases slam]; }; skeletor = derive2 { name="skeletor"; version="1.0.4"; sha256="1jfbfbkjx8mdwamsrkhvcnyn470in702vgcyw3g2dbgs84gl29q8"; depends=[]; }; - skellam = derive2 { name="skellam"; version="0.2.0"; sha256="0r5wbs5h7xc3k2vjxd4axwnxr9cmwm008fcyj1vyixkg8fa680gx"; depends=[]; }; + skellam = derive2 { name="skellam"; version="0.2.3"; sha256="0hmms6709v7mzp6qgcxljjxq4nccqiwphn1nk3jh6mp2n0zvaqjd"; depends=[]; }; sketch = derive2 { name="sketch"; version="1.1.20.3"; sha256="03ssz4vwrcfcqs5lvnrkm7yqc8ir62kz3zp8aycgl88rw5qm9003"; depends=[base64enc glue htmltools jsonlite magrittr purrr rlang rstudioapi shiny V8]; }; sketcher = derive2 { name="sketcher"; version="0.1.3"; sha256="011lx15whrdj5q5h33h9brkzbn2fnpm1nx9ip1v9xl5xfkbj7952"; depends=[downloader dplyr imager jpeg magrittr png readbitmap stringr]; }; sketching = derive2 { name="sketching"; version="0.1.2"; sha256="0k2rdiawj84zhfik3qzqqzabm9sdjwnr008p0fhaaqpifbr0q5xj"; depends=[MASS phangorn Rcpp]; }; - sketchy = derive2 { name="sketchy"; version="1.0.2"; sha256="0nvf87w3zcnly4b39rg8pa1651pk8zixkn6rj7y2hbf1qiyjwsqg"; depends=[crayon git2r knitr packrat stringi]; }; + sketchy = derive2 { name="sketchy"; version="1.0.3"; sha256="1vr3vwzbm1k1g05wxdv0y543zn1fspprr121i8pxqmgbyhcs1i65"; depends=[cli crayon git2r knitr packrat remotes rmarkdown stringi xaringanExtra]; }; skewMLRM = derive2 { name="skewMLRM"; version="1.6"; sha256="16gr0haag0pqw7k7nvfqlc6s5i92lkpd0ghkgvlwgql8jzw7zmlk"; depends=[clusterGeneration doParallel foreach MASS matrixcalc moments mvtnorm]; }; skewlmm = derive2 { name="skewlmm"; version="1.1.0"; sha256="04jxf7bwh71r33s1s2xhiy0ipfaqz97ya86rr4m0f5kxnb942ggv"; depends=[dplyr furrr future ggplot2 ggrepel haven matrixcalc moments MomTrunc mvtnorm nlme numDeriv optimParallel purrr relliptical TruncatedNormal]; }; skewsamp = derive2 { name="skewsamp"; version="1.0.0"; sha256="1b41zjjnn7vphcrbvrvqx66jfd9fb8v22xmgql6wh26a2y81bman"; depends=[]; }; skewt = derive2 { name="skewt"; version="1.0"; sha256="1jaldnqgjzky2vr290vzpzdwsa5s92l977v6k2yhpzmmw4k4x3l7"; depends=[]; }; skilljaR = derive2 { name="skilljaR"; version="0.1.2"; sha256="04x1hfg0kvbr5c1abl0kfh1x07kvgyzhxzd38j6blg16awcvfxva"; depends=[dplyr httr jsonlite magrittr purrr]; }; skimr = derive2 { name="skimr"; version="2.1.5"; sha256="11w32vfwm6pz4cvmm60na6pjbyjvw2xq489ij5xqzx0n3pma7wq6"; depends=[cli dplyr knitr magrittr pillar purrr repr rlang stringr tibble tidyr tidyselect vctrs]; }; + skipTrack = derive2 { name="skipTrack"; version="0.1.0"; sha256="0s5w2jixm52pbpi2cmgf9s1d6prs49dz4kcrr135d0nbdx34ma2w"; depends=[doParallel foreach genMCMCDiag ggplot2 ggtext glmnet gridExtra LaplacesDemon lifecycle mvtnorm optimg]; }; sklarsomega = derive2 { name="sklarsomega"; version="3.0-2"; sha256="027rx1x5hsn0qx7s6s2sqf13p49jbhi6g7w0fzfqf619p3fzkghg"; depends=[dfoptim extraDistr hash LaplacesDemon Matrix mcmcse numDeriv spam]; }; skm = derive2 { name="skm"; version="0.1.5.4"; sha256="06g3bdncq2r56d8k3dr87gqnibypbsps0gj4jxkw9q1sq1yaff3v"; depends=[data_table magrittr plyr Rcpp RcppArmadillo RcppParallel]; }; skmeans = derive2 { name="skmeans"; version="0.2-16"; sha256="0rigfkjq41ivj2hz35rqak23mmzyz15ic5izzkm3vxbwhsmk9ars"; depends=[clue cluster slam]; }; - skpr = derive2 { name="skpr"; version="1.6.2"; sha256="0hc3lk9d1c92cfv7cvk85jb9pp8ilh8sgwjg3vgr11yxnzay7hmk"; depends=[car doFuture doParallel doRNG foreach future iterators lazyeval lme4 lmerTest magrittr progress progressr Rcpp RcppEigen scales survival viridis]; }; + skpr = derive2 { name="skpr"; version="1.7.1"; sha256="1g19pq73map54sypkarvyw191zgf4cbmr1hskr8amg75wvw8mg11"; depends=[car doFuture doParallel doRNG foreach future iterators lme4 lmerTest magrittr progress progressr Rcpp RcppEigen scales survival viridis]; }; skylight = derive2 { name="skylight"; version="1.2"; sha256="1yh3hk1z4c25pkb9gzyc16a68jd1za4h9z4l9xh5avkg68ixff5j"; depends=[]; }; skynet = derive2 { name="skynet"; version="1.4.3"; sha256="08a5p3rk0qhsxawdxj5sfw07rdk56x6viy37w1b0hxqaxxxv239i"; depends=[data_table dplyr geosphere ggplot2 ggrepel httr igraph leaflet maps RCurl stringr]; }; skyscapeR = derive2 { name="skyscapeR"; version="1.0.0"; sha256="1x3s003wdmnf0h1k3gl6cvd35g516y7v2yzahr3wxk2np832kjli"; depends=[doParallel foreach httr MESS numDeriv oce plotrix png RColorBrewer rootSolve swephR zoo]; }; slackr = derive2 { name="slackr"; version="3.3.1"; sha256="08yyl0s2rb7yzq9zd173avdxrl8z59dknsxbmgg4m94wf09xwy55"; depends=[cachem dplyr httr jsonlite magrittr memoise rlang tibble withr]; }; slam = derive2 { name="slam"; version="0.1-50"; sha256="1ggqcf8l1z2hpi7qy4mg0d2ps48bjjb8z1y1xz6fq162cqrbz6bq"; depends=[]; }; slanter = derive2 { name="slanter"; version="0.2-0"; sha256="024dkman0r5qzc215gw0ds932vdaz8krrhv64fjw9pni37ixc3mf"; depends=[Matrix pheatmap pracma]; }; + slap = derive2 { name="slap"; version="2024.4.1"; sha256="1w1av896q4jfc1kv3mpisqra6s3cbcr7i7x8nm24hwq24bx0kdik"; depends=[cli rlang]; }; slasso = derive2 { name="slasso"; version="1.0.0"; sha256="0k83szk6jzvn5353p9ia2ipmjyl65ivx95rj62rq8dyjfrdyzs0d"; depends=[cxxfunplus fda fda_usc inline MASS matrixcalc matrixStats plot3D Rcpp RcppArmadillo]; }; + slca = derive2 { name="slca"; version="1.0.0"; sha256="0wllwz9cn9wvxwb4gd4g3blwhaplmfdxx06jki41ii64sq9cxbyq"; depends=[DiagrammeR magrittr MASS Rcpp]; }; slcm = derive2 { name="slcm"; version="0.1.0"; sha256="0avbgsf3hgvpamw6cbs9l7l8s8bc89sqyjskj7mhjbvxsjdqd416"; depends=[Rcpp RcppArmadillo]; }; sld = derive2 { name="sld"; version="1.0.1"; sha256="1sx3wmpc89hjabj476dhhmsp0mxbfpqxr65y63jrqngx1c3zgbx1"; depends=[lmom]; }; sleekts = derive2 { name="sleekts"; version="1.0.2"; sha256="0syk244xrsv8hz5sxm7wizk0kyn1nc6z4c63c8xn57fz130zj75k"; depends=[]; }; - sleeperapi = derive2 { name="sleeperapi"; version="1.0.4"; sha256="0hllaz584xqdj9inmibdm9pd0vcirwz4jdk2prc5cwjavxhkj51y"; depends=[httr jsonlite plyr]; }; + sleeperapi = derive2 { name="sleeperapi"; version="1.1.1"; sha256="1lmpcpd407bz7fwb20c8m5vaxq7l7sgna7jmh6mjy579az0fzllj"; depends=[dplyr DT htmltools htmlwidgets httr jsonlite plotly purrr RColorBrewer rlang scales shiny shinycssloaders shinyWidgets stringr tidyr]; }; sleepr = derive2 { name="sleepr"; version="0.3.0"; sha256="1ka4pl6a09d1qga5svcirc5ywmzz9pcml09053745lz3p1v8fnn3"; depends=[behavr data_table]; }; sleepwalk = derive2 { name="sleepwalk"; version="0.3.2"; sha256="1y0945r9ksz8x6w5rx31sm9x2q2ydd9sc1fwa0paq5f11hygss5d"; depends=[cowplot ggplot2 httpuv jrc jsonlite scales]; }; sleev = derive2 { name="sleev"; version="1.0.3"; sha256="0irc0k4asml5vfqwkv5rxw6xv1dj6sllravyggg49cdqfbhwcv3w"; depends=[Rcpp RcppArmadillo RcppEigen]; }; @@ -18247,10 +18535,10 @@ in with self; { smartsnp = derive2 { name="smartsnp"; version="1.1.0"; sha256="1gzzhys6bja55iclkji254kri6r3iamiw7bv881mp615wi9r3hx2"; depends=[bootSVD data_table foreach Rcpp RcppArmadillo Rfast RSpectra vegan vroom]; }; smatr = derive2 { name="smatr"; version="3.4-8"; sha256="0qqqbg65flxh48sw7x90zvgzbpcfzb1811h0pz3zlhdw9a7khs9n"; depends=[]; }; smbinning = derive2 { name="smbinning"; version="0.9"; sha256="1sr0nsqqzxdf402g9qx1ycigbh330idl9n2cyli4x4zxj1nqm3yv"; depends=[Formula gsubfn partykit sqldf]; }; - smcfcs = derive2 { name="smcfcs"; version="1.7.1"; sha256="1i57rgibm5fqdw8gk61f79mvz60ygzgbfsb2nyckfxiamy25nfq2"; depends=[abind brglm2 checkmate MASS rlang survival VGAM]; }; + smcfcs = derive2 { name="smcfcs"; version="1.8.0"; sha256="0l658ynkf3lb1nckfrgysj19m6735fi2k48r7l5qaf6jq7f3l3bh"; depends=[abind brglm2 checkmate MASS rlang survival VGAM]; }; smcryptoR = derive2 { name="smcryptoR"; version="0.1.2"; sha256="05njdwx1ah1559k2fsvqg4wcm07k0570zxlnl4zscr042ixyg0sw"; depends=[]; }; smcure = derive2 { name="smcure"; version="2.1"; sha256="0377dj6wvny2y44phsf7177ivn70a55v316skwf02n03ghqx73k9"; depends=[survival]; }; - smd = derive2 { name="smd"; version="0.6.6"; sha256="1nvlka2prqh1hcj4ngpj2c2gmfryziijqwjyfy9fmq78skiq0jij"; depends=[MASS]; }; + smd = derive2 { name="smd"; version="0.7.0"; sha256="15npiffznxlvd8rih0z63vdxykhh8fcdsgbrjkjgnakd9fi5xad5"; depends=[MASS]; }; smdata = derive2 { name="smdata"; version="1.2"; sha256="1p26b46kg4hmhs2fl9h9vchar00llqv58ylx438bjgzz4f229qvr"; depends=[]; }; smdi = derive2 { name="smdi"; version="0.2.2"; sha256="0bjwh9qbcr8221k43gayridqrsr3sf7mwgvlwy76k9dmjr0bid63"; depends=[broom dplyr fastDummies forcats ggplot2 glue gt Hotelling lifecycle magrittr mice naniar pROC randomForest stringr survival tableone tibble tidyr tidyselect]; }; smdocker = derive2 { name="smdocker"; version="0.1.4"; sha256="13jkd81irk32m1w9djsgsgl79s8i9ynz10j7m8imqpk402zc7cbd"; depends=[jsonlite paws_compute paws_developer_tools paws_machine_learning paws_management paws_security_identity paws_storage uuid zip]; }; @@ -18258,22 +18546,23 @@ in with self; { smetlite = derive2 { name="smetlite"; version="0.2.10"; sha256="1q7fqfdd6m7jv5waajmmsc7ql16lcyy6z2k41mz6gvdqz914gg16"; depends=[readr stringr]; }; smfishHmrf = derive2 { name="smfishHmrf"; version="0.1"; sha256="1k6mpyp11zv5rc3k98baymr903p2pf424nf9xng20q1li8s8y2ab"; depends=[fs pracma Rdpack]; }; smfsb = derive2 { name="smfsb"; version="1.5"; sha256="092f9zcds183ya1j3qv2jjpi3rbpzzhb2wirlzpqk5bsfbyri93c"; depends=[abind]; }; - smicd = derive2 { name="smicd"; version="1.1.3"; sha256="070dbi637rk6c938fljmwfhz4lpc4n09gj8lkbvbvdsb7m8bjk73"; depends=[formula_tools Hmisc ineq laeken lme4 MuMIn mvtnorm truncnorm weights]; }; + smicd = derive2 { name="smicd"; version="1.1.5"; sha256="0lcdclp2bxs5g47a49xhwqgsl15czg2pym0d6z287wj4ccpxihxh"; depends=[formula_tools Hmisc ineq laeken lme4 mvtnorm truncnorm weights]; }; smidm = derive2 { name="smidm"; version="1.0"; sha256="1a26y70mb5qzl1zjaicvnb8i7z3r94qqzda2cpac776h1w35zy51"; depends=[dplyr extraDistr]; }; - smile = derive2 { name="smile"; version="1.0.4.1"; sha256="0781rzkqwpqnl22phxdcf533p55pshfp4v01k8d1bhd5yvr13y7k"; depends=[Matrix mvtnorm numDeriv Rcpp RcppArmadillo sf]; }; + smile = derive2 { name="smile"; version="1.0.5"; sha256="1474jfk6vqcx3jv0mlf45l93bnn3f2qgm2j03rbjid4skg811618"; depends=[Matrix mvtnorm numDeriv Rcpp RcppArmadillo sf]; }; smirnov = derive2 { name="smirnov"; version="1.0-1"; sha256="09mpb45wj8rfi6n6822h4c335xp2pl0xsyxgin1bkfw97yjcvrgk"; depends=[]; }; + smlePH = derive2 { name="smlePH"; version="0.1.0"; sha256="0vkzgm5cjlwdxvrk4jjmj4jcwvpfs0kkc182iz0bkx6vp0ykmin7"; depends=[MASS splines2]; }; smlmkalman = derive2 { name="smlmkalman"; version="0.1.1"; sha256="1ns717rq0vipplh3l2ypinrscv3bjv86j68aw53ygs6g59h0v2vp"; depends=[pracma scales spdep truncnorm]; }; smmR = derive2 { name="smmR"; version="1.0.3"; sha256="0b6w2k5j65jdngc871ch9ragr7qgwbkl4nhk3gqnbpvkr9m4x88f"; depends=[DiscreteWeibull Rcpp RcppArmadillo seqinr]; }; smof = derive2 { name="smof"; version="1.1.0"; sha256="0sysqz2jxzfpiril7i6496in43zpk5nrvybzz40rb5dashwwh4nv"; depends=[]; }; smoke = derive2 { name="smoke"; version="2.0.1"; sha256="0kq64l5w5c86qnnqd3q5cm2n33dkfphpjgyxz30d2i0ayq4mjl0s"; depends=[Rdpack]; }; smoof = derive2 { name="smoof"; version="1.6.0.3"; sha256="1cazhnd0m5jjzixaqgqh2h3rsa2sw3k8slj5cmgm8v47aaqn91mg"; depends=[BBmisc checkmate ggplot2 ParamHelpers Rcpp RcppArmadillo]; }; - smooth = derive2 { name="smooth"; version="4.0.0"; sha256="0r123h71wxgwn694mn2vhc7hhicj8d33h5q4djmkp3m72dkzxyqj"; depends=[generics greybox MASS nloptr pracma Rcpp RcppArmadillo statmod xtable zoo]; }; + smooth = derive2 { name="smooth"; version="4.0.1"; sha256="0z9iacmrvlrz6rk1dmih6qqfgmav14aar2nkmk7f1gr5f285r56d"; depends=[generics greybox MASS nloptr pracma Rcpp RcppArmadillo statmod xtable zoo]; }; smoothAPC = derive2 { name="smoothAPC"; version="0.3"; sha256="11f34qqdm8m0hmy9jf29q439slchvmqgdfrmak7vcdhfnjcylr5r"; depends=[colorspace lmtest quantreg rgl SparseM]; }; smoothHR = derive2 { name="smoothHR"; version="1.0.5"; sha256="0ljgk297sm201hzzjajddv39x78d90wn49sbzjrvia2d2hwz5s3j"; depends=[survival]; }; smoothROCtime = derive2 { name="smoothROCtime"; version="0.1.0"; sha256="03iihjxb5xdaf74cm9cajqqjli754mdmv5v1y4hla9vv23017ca1"; depends=[ks]; }; smoothSurv = derive2 { name="smoothSurv"; version="2.6"; sha256="1fw5ibcsr13n3ycs1rkcnd3x08qgxz31hzfra6hpjkzcavcxdlk4"; depends=[survival]; }; smoothedLasso = derive2 { name="smoothedLasso"; version="1.6"; sha256="0007i40a12jgavgd95fbpiil1s331qd05ww6v19l49lbnlk3ldxg"; depends=[Matrix Rdpack]; }; - smoother = derive2 { name="smoother"; version="1.1"; sha256="0nqr1bvlr5bnasqg74zmknjjl4x28kla9h5cxpga3kq5z215pdci"; depends=[TTR]; }; + smoother = derive2 { name="smoother"; version="1.3"; sha256="0xw28qv8f5i05ajx32njnql6hql5njqyc47wcq6c75cxiv44ppz8"; depends=[TTR]; }; smoothic = derive2 { name="smoothic"; version="1.2.0"; sha256="11id442cgnk6a0nd0c20rz5ccxlq3hhpsmvmlvg93jf4v6c2046z"; depends=[data_table dplyr ggplot2 MASS numDeriv purrr rlang stringr tibble tidyr toOrdinal]; }; smoothie = derive2 { name="smoothie"; version="1.0-3"; sha256="1ari4av4vsydaxg56vsfifc50kxsqy8xlxl7by32capc6pcjwvq8"; depends=[]; }; smoothmest = derive2 { name="smoothmest"; version="0.1-3"; sha256="1m8kiwv9nl3c7xggwspa9pridmpgsq3s1ivwrgsv2aaxddwg1wis"; depends=[MASS]; }; @@ -18285,6 +18574,7 @@ in with self; { smotefamily = derive2 { name="smotefamily"; version="1.4.0"; sha256="05ck6c4pldqqspb7abjh8vabc3g0fp6ivfbd9y2q2rm031mil4p2"; depends=[dbscan FNN igraph]; }; smovie = derive2 { name="smovie"; version="1.1.6"; sha256="0a2npwp8bwkqqwpdb99mm993na282qaj63xhwf1s8bwvia4q4npp"; depends=[rpanel]; }; smpic = derive2 { name="smpic"; version="0.1.0"; sha256="0ff2146gjcrc6nvrbf4779jh076abhb843zzlk2zvqir13qfap61"; depends=[ggplot2 imager stringr]; }; + smplot2 = derive2 { name="smplot2"; version="0.2.3"; sha256="1cn4sv7a7gra2b7xwkwjglaygrrcd9b6mdh00dgq3mpf0b8rllvg"; depends=[cowplot dplyr ggplot2 ggpubr Hmisc patchwork pwr rlang tibble zoo]; }; sms = derive2 { name="sms"; version="2.3.1"; sha256="0vr5jy8bxbczaqr9kg0fnanxhv9nj51yzgacrb63k33cs85p981m"; depends=[doParallel foreach iterators]; }; smss = derive2 { name="smss"; version="1.0-2"; sha256="04lgfdcvnzpnpplyl62fy7slyiy8wkqpjjrzmclgqis3c9zkkncp"; depends=[]; }; smurf = derive2 { name="smurf"; version="1.1.5"; sha256="1gpzzj67x0i70vw1x4rv56mhk2b74ynvdsy93rzmdk6b2h3dvv46"; depends=[catdata glmnet MASS Matrix mgcv RColorBrewer Rcpp RcppArmadillo]; }; @@ -18302,27 +18592,27 @@ in with self; { snfa = derive2 { name="snfa"; version="0.0.1"; sha256="01k2nw8b8mwsd07jijfqk3rj88l9m36c5jai7qma56fjxx23s3wb"; depends=[abind ggplot2 prodlim quadprog Rdpack rootSolve]; }; snha = derive2 { name="snha"; version="0.1.3"; sha256="1bksc9s23widrdvp1wfx6808b4cdwvmq3iqkd87pbcr16bvpvnwc"; depends=[MASS]; }; snn = derive2 { name="snn"; version="1.1"; sha256="0yywn3v1iz9xizwli3gmzprkx66b5a813mbp8hq2vsj8n4lfj8r5"; depends=[]; }; - snotelr = derive2 { name="snotelr"; version="1.2"; sha256="140f34dsylsb0z9aw446xhsghl1r1qnddwai87201pymmjgqryn0"; depends=[dplyr httr memoise rvest shiny]; }; + snotelr = derive2 { name="snotelr"; version="1.4"; sha256="1sr5ihr8qsa0lcihx8cgkr3q9qhc9grjyjp2fbf4siv7j3p21xzp"; depends=[dplyr httr memoise rvest shiny]; }; snow = derive2 { name="snow"; version="0.4-4"; sha256="1j8kvf3imxijsqkdjz4i9s7qggfxqrpas46y5wz6za92y937yn44"; depends=[]; }; snowFT = derive2 { name="snowFT"; version="1.6-1"; sha256="0y7ql23vv5qdx0pgblfybjwxc0rgvv7z868c6axgy78xrzm6qjd1"; depends=[rlecuyer snow]; }; snowboot = derive2 { name="snowboot"; version="1.0.2"; sha256="0jj3p0g4rwml8vmlwj10rfisxfjlipcrpvq5z134z4j35jp6ggv3"; depends=[igraph Rcpp Rdpack]; }; snowfall = derive2 { name="snowfall"; version="1.84-6.3"; sha256="0hxip3rzv7slxvif1000avbcid2mjxj1y9mimyvk87h404mr6h96"; depends=[snow]; }; snowflakes = derive2 { name="snowflakes"; version="1.0.0"; sha256="0adna9jfs0wv4dhyjczxhq7c0ldjfai07p1q9119avxyilv9x0vi"; depends=[]; }; - snowquery = derive2 { name="snowquery"; version="1.0.0"; sha256="0dkalqpfnqgjkaancljyksn83cqbvzxx8j2998wlg9kmrkjvw6kk"; depends=[DBI reticulate RPostgres yaml]; }; + snowquery = derive2 { name="snowquery"; version="1.2.0"; sha256="1q9qbz35pid2y010gs69yqb4x2cq56xkgxk1grl8hhvp4fb1iszg"; depends=[DBI reticulate RPostgres RSQLite yaml]; }; snpAIMeR = derive2 { name="snpAIMeR"; version="2.1.1"; sha256="1b24x8aqfk909nzy3xzpvrcrfisnvh0p5v895yrsx8knm1cjh0x3"; depends=[adegenet doParallel dplyr forcats foreach ggplot2 magrittr readr tidyr withr yaml]; }; snpReady = derive2 { name="snpReady"; version="0.9.6"; sha256="1r96j8zh84dn7qh3zgl0p0v3a80hx2wd3c4jgjlr43hzl7yglpqr"; depends=[impute Matrix matrixcalc rgl stringr]; }; snplinkage = derive2 { name="snplinkage"; version="1.0.0"; sha256="112wg2gnr4ikj916nb71sm39g41ls05d4j56hhml9hfnkiv76x5p"; depends=[gdsfmt ggplot2 gtable GWASTools magrittr]; }; snplist = derive2 { name="snplist"; version="0.18.2"; sha256="1sa2s3br4agx920jpr250iih61p99v500nh0c1w99w0846g9908c"; depends=[biomaRt DBI R_utils Rcpp RSQLite]; }; snpsettest = derive2 { name="snpsettest"; version="0.1.2"; sha256="0djz39b59x3kd5albdwjsgvln1qbm9xfbbglbym87xc3924sbwqj"; depends=[data_table gaston Rcpp RcppArmadillo]; }; sns = derive2 { name="sns"; version="1.2.2"; sha256="1zb0s89lp2049i7l919dpd7bd396y9s6v8913qz56fvsq95sbvcn"; depends=[coda mvtnorm numDeriv]; }; - snvecR = derive2 { name="snvecR"; version="3.9.1"; sha256="1ax3ckipylqnwnk2534fd6akk2n7vqwg0nsxyvrig4kqwl1dfhns"; depends=[cli deSolve dplyr glue lubridate purrr readr rlang tibble tidyr tidyselect]; }; + snvecR = derive2 { name="snvecR"; version="3.9.4"; sha256="1z383bbhbpz0hx3biwlh4dzzc0hmjqzka351xn572sb2pycxrgbb"; depends=[backports cli deSolve dplyr glue purrr readr rlang tibble tidyselect]; }; sobolnp = derive2 { name="sobolnp"; version="0.1.0"; sha256="00rmigjyd3fsmhrhbvjzrfsl4ir0xpfr4xbgjws6vkx2rmcqnq1s"; depends=[minqa np pbmcapply]; }; soc_ca = derive2 { name="soc.ca"; version="0.8.0"; sha256="16l0synym91b7djgzdcz43dnvw44fkyxky9gm37ixbxzq1czdp9w"; depends=[dplyr ellipse FactoMineR flextable forcats ggplot2 ggrepel gridExtra htmlTable magrittr Matrix purrr RColorBrewer reshape2 rlang shiny stringr tibble tidyr]; }; socceR = derive2 { name="socceR"; version="0.1.1"; sha256="1vd0r3vixavg1br2q3kfn3nvl7dw854vkcfwcvyw411k84ivb13y"; depends=[Rcpp]; }; social = derive2 { name="social"; version="1.0"; sha256="0ny81bhj80rlwwa6cgbkdz2rxz6bp0f3nvjr1sqxr4s8l8rnf4ic"; depends=[Rcpp]; }; socialh = derive2 { name="socialh"; version="0.1.1"; sha256="134jdhnnjxgnc8k1ws7pni5g44imxblngf106rwp8ff5a2gmrf6c"; depends=[circlize data_table dplyr ggplot2 magrittr]; }; - socialmixr = derive2 { name="socialmixr"; version="0.3.1"; sha256="1idkc4gsf5jnirgvnrcj9ciaz11r1kqkh7167jfly7wm5r31r3y3"; depends=[countrycode curl data_table fields httr jsonlite lubridate oai wpp2017 xml2]; }; - socialranking = derive2 { name="socialranking"; version="1.1.0"; sha256="0mhm1981nixa6vlkjnjsc292pkypjx666sz8p5sxv75zpajxjzfw"; depends=[Rdpack relations rlang]; }; + socialmixr = derive2 { name="socialmixr"; version="0.3.2"; sha256="1gj7gsjzrx170i8ifnpi38pas5k952nrm1bx59zbjz46wc2h3n2h"; depends=[countrycode curl data_table fields httr jsonlite lifecycle lubridate oai wpp2017 xml2]; }; + socialranking = derive2 { name="socialranking"; version="1.2.0"; sha256="0py0p2hbdfaf3phs94i97a955l6r7kxhc3ip2fg6r7glvgjrcrzn"; depends=[Rdpack relations rlang]; }; socialrisk = derive2 { name="socialrisk"; version="0.5.1"; sha256="1v9hvrqwihfprs32pplxsv00myf0p5pa32601s8s826jss3fkx4w"; depends=[dplyr magrittr rlang stringr tidyr tidyselect]; }; sociome = derive2 { name="sociome"; version="2.2.5"; sha256="1fyimv1i83ck7hwb7nnbdk46fiasi4kb8h944dni73536mnhc57g"; depends=[dplyr magrittr mice psych purrr rlang stringr tidycensus tidyr]; }; socviz = derive2 { name="socviz"; version="1.2"; sha256="1294xwy26vshmaiw3pkx3f90j8g6fv64gygv88b7lnz6fhai1nq5"; depends=[dplyr fs magrittr rlang tibble]; }; @@ -18332,7 +18622,7 @@ in with self; { softImpute = derive2 { name="softImpute"; version="1.4-1"; sha256="1v2a4d688ij5zcvkzpra9yx40xckdfnllnfnyq2450zf3n1kjk7a"; depends=[Matrix]; }; softbib = derive2 { name="softbib"; version="0.0.2"; sha256="0rhia0vx53lhmykf2rmnr9kbcvld35n2and1l3riqdfr6jrdg8pb"; depends=[bibtex checkmate renv rmarkdown]; }; softclassval = derive2 { name="softclassval"; version="1.0-20160527"; sha256="1f5qj5sajy3dg0mgss6f9w6v5a2prcypld9jcv457bd4n4a409kr"; depends=[arrayhelpers svUnit]; }; - soilDB = derive2 { name="soilDB"; version="2.8.1"; sha256="1k5793ilp5ysb28w778jq51nxhn550dp8bx3zs48q5cm814ccwkf"; depends=[aqp curl data_table DBI]; }; + soilDB = derive2 { name="soilDB"; version="2.8.3"; sha256="1b85j3fpcvzm05pyv6zmd7j8af1nvkrbpsiz5cxzcx1l8kg1fmy4"; depends=[aqp curl data_table DBI]; }; soilassessment = derive2 { name="soilassessment"; version="0.2.6"; sha256="0cgyji88q3r6b57q32nk8xgxb4q29678h8zgh9ywxhr3mr40i0qv"; depends=[caret deSolve e1071 FuzzyAHP googledrive Hmisc nnet png randomForest raster sf soiltexture sp terra]; }; soilchemistry = derive2 { name="soilchemistry"; version="0.1.0"; sha256="1fkq5zpkcwh7ps2r79kc2pw7q2i4hjjnckx2f29l8064hswd9jc4"; depends=[]; }; soilfoodwebs = derive2 { name="soilfoodwebs"; version="1.0.2"; sha256="09nc2ywxk8kl0akdwxz5zddrnqljvqpixjaz2bjkpxy0xj0qd82l"; depends=[deSolve diagram lpSolve quadprog rootSolve stringr]; }; @@ -18350,18 +18640,18 @@ in with self; { solrium = derive2 { name="solrium"; version="1.2.0"; sha256="16x4gjk0x6m9yjq9sk3kwbw8qm7w16vmbnfy5xa9zikw96cl3iky"; depends=[crul dplyr jsonlite plyr R6 tibble xml2]; }; solvebio = derive2 { name="solvebio"; version="2.14.0"; sha256="182ybiia1qc25fnc9wrzrfzvgd4m340nrrn7llx0pbc1iq1q7as2"; depends=[httr jsonlite mime]; }; som = derive2 { name="som"; version="0.3-5.1"; sha256="1fbza1jxvwrkf5x3inkj36vshhkn7mz0ajqlxalbfmk6ngjw1x56"; depends=[]; }; - som_nn = derive2 { name="som.nn"; version="1.1.0"; sha256="0mw2c2lqvdq9bhndpjyawjy43l4x7clcsx2350j45g7fnchhy602"; depends=[class hexbin kohonen som]; }; + som_nn = derive2 { name="som.nn"; version="1.4.4"; sha256="1qirkm54yav7h5836l81rah07r4nm8iy7ky6pf7c2a7vfbwddiqk"; depends=[class hexbin kohonen som]; }; soma = derive2 { name="soma"; version="1.2.0"; sha256="05hm6yqh1d10kbgvy5j0cj2lvcnib4p9lmjcl32zxy1hazpagplq"; depends=[reportr]; }; someMTP = derive2 { name="someMTP"; version="1.4.1.1"; sha256="197ajnnp92qh807a55z0i9z8nw0vmf5vvr216nxjwa2l9kw8c84k"; depends=[]; }; sommer = derive2 { name="sommer"; version="4.3.4"; sha256="0c6g0ldla3ix40aw0h7mylz3xlvdnvrlz288hjkq86r8g9i5mq2b"; depends=[crayon MASS Matrix Rcpp RcppArmadillo RcppProgress]; }; somspace = derive2 { name="somspace"; version="1.2.4"; sha256="1268sj89cbkp2nm0i905s991a92w4aki93hxia2vqk6fdh200rdl"; depends=[data_table ggplot2 kohonen maps reshape2]; }; sonar = derive2 { name="sonar"; version="1.0.2"; sha256="1f0f5iqi3y9vnxyym14nm8dqxw0vcpnxmvvkx4sm612i4fclg1f9"; depends=[]; }; sonicLength = derive2 { name="sonicLength"; version="1.4.7"; sha256="1wvdcjk641kcmflda0mibqr519qbqgb26mgwibjhm6pzgvwpy2dg"; depends=[]; }; - sonicscrewdriver = derive2 { name="sonicscrewdriver"; version="0.0.6"; sha256="061yk6z9b4d2hb40zvj22sdk9dgjsc6vp6lgjh0j75623nw2ggim"; depends=[ggplot2 hms jsonlite mime Rdpack seewave stringi suncalc tuneR]; }; + sonicscrewdriver = derive2 { name="sonicscrewdriver"; version="0.0.7"; sha256="0z18hyicbh6naxq5hz5bzx61x7kr1j5jsk98j71m8dalch2wysbm"; depends=[ggplot2 hms jsonlite mime Rdpack seewave stringi suncalc tuneR]; }; sonify = derive2 { name="sonify"; version="0.0-1"; sha256="1wkqqgf8fhhaz1dmri2zzr8cdwmx3cgrxbprrz3yily5r1m17d15"; depends=[tuneR]; }; soptdmaeA = derive2 { name="soptdmaeA"; version="1.0.0"; sha256="03n1y82myq0rz14awjnx9nx1dz3dxqq58m13cw7a7ncap7fmw9r5"; depends=[igraph MASS Matrix]; }; soql = derive2 { name="soql"; version="0.1.1"; sha256="12wvbxy9xx140b7mga4ma7hkg4q6kv549gkq15fnf4dn8q43x8nf"; depends=[]; }; - sorcering = derive2 { name="sorcering"; version="1.0.0.1"; sha256="1av5hi2qs1yrcxgfr7g1c1pv32ljza6jiapkxy10lvlbnkk3by15"; depends=[mathjaxr Rcpp RcppArmadillo Rdpack]; }; + sorcering = derive2 { name="sorcering"; version="1.0.1"; sha256="195m83n57fsxg3w59y8q33b4hl9ng752lxdnvmvfb1m7iy1yaj49"; depends=[mathjaxr Rcpp RcppArmadillo Rdpack]; }; sorocs = derive2 { name="sorocs"; version="0.1.0"; sha256="0gy23rldhnlz6jmf9rdzl4mmfkn5gjcavq2jfcz6dgjafl3v9vgl"; depends=[MASS MCMCpack mvtnorm]; }; sortable = derive2 { name="sortable"; version="0.5.0"; sha256="1y6cljcjai2k2j7abzn07ab170gpp25zvl9gk755l4gwi7clgl2c"; depends=[assertthat ellipsis htmltools htmlwidgets jsonlite learnr rlang shiny]; }; sorvi = derive2 { name="sorvi"; version="0.8.21"; sha256="0l8lznn2vnnyzq3i1hab7lcylmhkn9mpzrdymdmai4w2khg8r43b"; depends=[checkmate dlstats dplyr ggplot2 gh lubridate magrittr purrr rlang rvest sf tidyr xml2]; }; @@ -18370,66 +18660,66 @@ in with self; { sotu = derive2 { name="sotu"; version="1.0.4"; sha256="0hx37as51q3rk7z9vp8awhkj7a87nwd2jlp1hvfkli2j6l07sk7d"; depends=[]; }; sound = derive2 { name="sound"; version="1.4.6"; sha256="14jk5lg73v3gvnyvam3bsbcayawprasvlvaxwqryh148brqgfcrd"; depends=[]; }; soundClass = derive2 { name="soundClass"; version="0.0.9.2"; sha256="0z697asv2kzs93b45ndbkxfdzq3fmi1f6aprvpxps4x354gg2pi6"; depends=[DBI dbplyr dplyr generics htmltools keras magrittr RSQLite seewave shiny shinyBS shinyFiles shinyjs signal tuneR zoo]; }; - soundcorrs = derive2 { name="soundcorrs"; version="0.4.0"; sha256="1azvsv3bghlab8q24wbb6xwd5a4cydx1cagvhk8h0h5ib9957zab"; depends=[]; }; soundecology = derive2 { name="soundecology"; version="1.3.3"; sha256="16h6gbdlyav7wbfisdv1f2zsqhr45liidgj7qqk8giwjxgan8q97"; depends=[ineq oce pracma seewave tuneR vegan]; }; - soundgen = derive2 { name="soundgen"; version="2.6.2"; sha256="15db2zdy90kbc4qx5wcnx90ks9ijc8c1znz4a6rkq16sf12p39jd"; depends=[data_table doParallel dtw foreach mvtnorm nonlinearTseries phonTools seewave shiny shinyBS shinyjs signal tuneR zoo]; }; + soundgen = derive2 { name="soundgen"; version="2.6.3"; sha256="1d865daz5ylbcklb67yqwjflw5pv16rgyvjqxlwnn2knkxhm6m92"; depends=[data_table doParallel dtw foreach mvtnorm nonlinearTseries phonTools seewave shiny shinyBS shinyjs signal tuneR zoo]; }; sourcetools = derive2 { name="sourcetools"; version="0.1.7-1"; sha256="1l9i9ram12pjks8h2gzmj119wf4ixwyhljsfv289dn8dgbdjp0cn"; depends=[]; }; sovereign = derive2 { name="sovereign"; version="1.2.1"; sha256="1v5cchwia8v9h4fpb506v6nikp5k042axmryjmqrgimaly8dk9nv"; depends=[broom dplyr furrr future ggplot2 gridExtra lmtest lubridate magrittr mclust purrr randomForest sandwich stringr strucchange tidyr xts zoo]; }; sox = derive2 { name="sox"; version="1.1"; sha256="03lnl431k0fr19akhdwzci2dgmcclkqqj30984wp05ldn87drcyy"; depends=[glmnet Rcpp survival]; }; - sp = derive2 { name="sp"; version="2.1-3"; sha256="0m44qr2l8xmqbgi95h200bwy9ca8jihiqzfarws1p09lwmr954zs"; depends=[lattice]; }; + sp = derive2 { name="sp"; version="2.1-4"; sha256="02lz8wcx16ay3zdqhdb57847i9qg2wzajrfp1z2xpmyjc7xyg1g1"; depends=[lattice]; }; sp23design = derive2 { name="sp23design"; version="0.9-1"; sha256="1ivsds210rpxj52labc9mf2ncm3vji983w0kj757jl1b308ql30s"; depends=[mvtnorm survival]; }; spANOVA = derive2 { name="spANOVA"; version="0.99.4"; sha256="0y1kqqfrl9rrskyvmzdjw9zyjgyqmz8b3cfgbba49n41wx2aiw79"; depends=[ape car DT geoR gtools knitr MASS Matrix multcomp multcompView mvtnorm rmarkdown ScottKnott shiny shinyBS shinycssloaders shinythemes spatialreg spdep xtable]; }; - spAbundance = derive2 { name="spAbundance"; version="0.1.1"; sha256="1g3kbgjn1rwgniprfmxknygkxa0g8ghhw7nrv7inc56nhhqvxs3r"; depends=[abind coda doParallel foreach lme4 RANN]; }; + spAbundance = derive2 { name="spAbundance"; version="0.1.3"; sha256="02qvgyiyrwaz2jgfp746fyr1bwd8m4lwjijaml9ychq4rdmrfjli"; depends=[abind coda doParallel foreach lme4 RANN]; }; spAddins = derive2 { name="spAddins"; version="0.2.0"; sha256="19wbcghcf0f9qvqy92jhsdcpmd9b4lkhxndvr71cyhzga539lh1n"; depends=[magrittr purrr rstudioapi stringr]; }; spBFA = derive2 { name="spBFA"; version="1.3"; sha256="1bi3lhbx37zlj2x0nql51x5422zxc1gcbn8vqjf81badwf80fwsp"; depends=[msm mvtnorm pgdraw Rcpp RcppArmadillo]; }; spBayes = derive2 { name="spBayes"; version="0.4-7"; sha256="18rb4k7yfnz07ilrgdipbl30a78zzl3yaikd999l482v1a95hibr"; depends=[coda Formula magic Matrix sp]; }; spBayesSurv = derive2 { name="spBayesSurv"; version="1.1.8"; sha256="0z91k88m5bh8ipicb43kknxshjr6dwr6whfkm28j49xwjrm4ydsy"; depends=[coda fields MASS Rcpp RcppArmadillo survival]; }; spCP = derive2 { name="spCP"; version="1.3"; sha256="0rphd8zawr2r14dzwv77plk5xw020pkc26ir72qiqc1acin42xd1"; depends=[msm mvtnorm Rcpp RcppArmadillo]; }; - spData = derive2 { name="spData"; version="2.3.0"; sha256="12w4chk71vqy1chij79928ppxdg2cz03hx9bgs5cgwj9f1ciyb2b"; depends=[sp]; }; + spData = derive2 { name="spData"; version="2.3.1"; sha256="0x80qzn12lrr8al5igj5nass3aqasg65drhdrb2p9cmp4chpydwc"; depends=[sp]; }; spDates = derive2 { name="spDates"; version="1.1"; sha256="0k6383hgrs4751qnwx03s85a9a0ldpxm7xanrnmg13plc2713kvm"; depends=[data_table dplyr ggplot2 gstat magrittr raster rcarbon rlang smatr sp viridisLite]; }; spFSR = derive2 { name="spFSR"; version="2.0.4"; sha256="1d4hdbgy21cq6hl5r8ig9mydiab4wr2df9wbrlhyy90a4x7gxfyi"; depends=[future ggplot2 lgr mlr3 mlr3learners mlr3pipelines ranger tictoc]; }; spFW = derive2 { name="spFW"; version="0.1.0"; sha256="1d00a01mnwc7lcnqgz2dfglhwqwhh9vm4yd904zq3s26zv4qapyf"; depends=[Rcpp RcppArmadillo]; }; spGARCH = derive2 { name="spGARCH"; version="0.2.2"; sha256="1wrmk2ybgysvibfy8vvp7pyqda5apqp0jxjfp3hlb416fza52966"; depends=[Matrix nleqslv Rcpp RcppEigen Rsolnp spdep truncnorm]; }; - spINAR = derive2 { name="spINAR"; version="0.1.0"; sha256="1g4yms3h7m42zfjix1n2yrxi5zj0v97klry6d4r7n0iwx4rllpp4"; depends=[checkmate progress]; }; + spINAR = derive2 { name="spINAR"; version="0.2.0"; sha256="02y0y6xzckzhygs7fwvnd3mgw8ay78wg850d46v4q6vxpb144wjy"; depends=[checkmate progress]; }; spMC = derive2 { name="spMC"; version="0.3.15"; sha256="1fv6769xz44xc50ad00df7bacqbwy6xnqm2072zjgkl1dbskfjma"; depends=[]; }; spMaps = derive2 { name="spMaps"; version="0.5.0"; sha256="1v5gvnyfj04rxraqngrmpkpq3874y422hr6yirj52iksb8ry0kgh"; depends=[sf sp]; }; spNNGP = derive2 { name="spNNGP"; version="1.0.0"; sha256="0z09hxmm2pbxsbm3zqk839z2gb3g2n2hqkahcbvcgywrqn3v8cal"; depends=[coda Formula RANN]; }; - spNetwork = derive2 { name="spNetwork"; version="0.4.3.8"; sha256="0jxm3csq6prqssw9jdlk0k1ipm19kfv1y8kjgyqfb5m5l1za5xvq"; depends=[abind BH cubature data_table dbscan dplyr future_apply ggplot2 igraph progressr Rcpp RcppArmadillo RcppProgress Rdpack sf spdep]; }; - spOccupancy = derive2 { name="spOccupancy"; version="0.7.2"; sha256="13zqdiwk692y1spqwi3wj9rmvy6v3165f162l1y37hg24m0000j0"; depends=[abind coda doParallel foreach lme4 RANN]; }; + spOccupancy = derive2 { name="spOccupancy"; version="0.7.6"; sha256="0gl6z2dch254nmyd19w7z3jmivadzvv27ymsbn1rk08qm19bf69g"; depends=[abind coda doParallel foreach lme4 RANN spAbundance]; }; spRingsteen = derive2 { name="spRingsteen"; version="0.1.0"; sha256="13mdbsbq51sp34xp04lgc4klwb3chnnkvh5r99qfapbbr0vra8vl"; depends=[devtools rlang]; }; spTDyn = derive2 { name="spTDyn"; version="2.0.2"; sha256="010x3rjncasly1scngwyiys7asmk4ay51bzhk0zfjazwfkmqd12r"; depends=[coda sp spacetime spTimer]; }; spThin = derive2 { name="spThin"; version="0.2.0"; sha256="0j10j1cbbwp3baqm3b59rxlnd643mkx1mirlxpnr1ad2g7xpm69f"; depends=[fields knitr spam]; }; spTimer = derive2 { name="spTimer"; version="3.3.2"; sha256="0dlsyj0mawpgxr1yn4ldqm3xh148c79lk55fq475zjzyiwz9ynfc"; depends=[coda extraDistr sp spacetime]; }; - spaMM = derive2 { name="spaMM"; version="4.4.16"; sha256="11drqd7fxby8s6dk13v94aqbhi2sj40qcjsmr7r7g0c95m8fsxj4"; depends=[backports boot crayon geometry gmp MASS Matrix minqa nlme nloptr numDeriv pbapply proxy Rcpp RcppEigen ROI]; }; + spaMM = derive2 { name="spaMM"; version="4.5.0"; sha256="1nr44jg73gnbc3q1ip7zmzl1n5bggbcgjrdlh6fg81zp41ba3ydv"; depends=[backports boot crayon geometry gmp MASS Matrix minqa nlme nloptr numDeriv pbapply proxy Rcpp RcppEigen ROI]; }; spaa = derive2 { name="spaa"; version="0.2.2"; sha256="163iipz1knxx1lzby9a3n1f014yqkf25z1wpwwy4gbx7sia499d5"; depends=[]; }; spaceNet = derive2 { name="spaceNet"; version="1.2"; sha256="1s2672icxs0qvdhl52xhllgvh1i9mjfrn5j3icyw6h61ljbnhy11"; depends=[MASS mclust permute RcppTN Rfast sna vegan]; }; - spacefillr = derive2 { name="spacefillr"; version="0.3.2"; sha256="0raaw9ib8b2dzkh4w28wpxcgxs7ky328yaayb64lc39syf7g19dv"; depends=[Rcpp]; }; + spacefillr = derive2 { name="spacefillr"; version="0.3.3"; sha256="08ghp7ym454911yymqa15mq8d3my2qpc7mphj17akm8pyskymnkc"; depends=[Rcpp]; }; spacejamr = derive2 { name="spacejamr"; version="0.2.1"; sha256="05rprsgnihhz3xhh7p9mkn4scpi318kvrkkrrw9j645d6bwfms5l"; depends=[crsuggest dplyr ggplot2 ggraph ggthemes igraph magrittr sf spatstat_geom spatstat_random]; }; spacesRGB = derive2 { name="spacesRGB"; version="1.5-0"; sha256="1v4az4qn965p0xds10ff7f4565j5n9pqc44501l6fi5j7h819hsc"; depends=[]; }; spacesXYZ = derive2 { name="spacesXYZ"; version="1.3-0"; sha256="10pmmfskgj1gfwfk5s44wdfk81l7kmga8xsirz49qnwy6xs148pv"; depends=[]; }; spacetime = derive2 { name="spacetime"; version="1.3-1"; sha256="1kr12pbi6hqns30kqy4jv5pcm3lgfcfyc2gwaak1jbg894csahhr"; depends=[intervals lattice sp xts zoo]; }; spacyr = derive2 { name="spacyr"; version="1.3.0"; sha256="1z4nx8phrc0l73xic2lkff03a54kjw343425h5mm2afz6zidcmf4"; depends=[data_table reticulate]; }; spaero = derive2 { name="spaero"; version="0.6.0"; sha256="0xigwi6w21y2fwicml0s2gylwnwp2qvrqskr0v8rd3bn01hg9ja3"; depends=[]; }; + spagmix = derive2 { name="spagmix"; version="0.4-1"; sha256="1vy951y7c1dabykqiij56qa56hc2lqahrav80698hpjbmxcr3w5f"; depends=[abind mvtnorm sparr spatstat spatstat_geom spatstat_random]; }; spam = derive2 { name="spam"; version="2.10-0"; sha256="0ydc513jg7phzdqg8jp7210ayrrmxq91jafqzx8z1v0172i8d73i"; depends=[dotCall64 Rcpp]; }; spam64 = derive2 { name="spam64"; version="2.10-0"; sha256="0kb7jz12xb0i45b70x3p785md01s7wbwl8lgisq4i83jvlz016ln"; depends=[]; }; spanish = derive2 { name="spanish"; version="0.4.2"; sha256="15drc11lh0qxpww50p0smi8qxfbln82bx0yd74jqf71irhk5jxyp"; depends=[magrittr xml2]; }; - spant = derive2 { name="spant"; version="2.19.0"; sha256="0s2rlcgw7y07ba81k528915b2b9i6ccvmk3cms2h7xjna16fzn4d"; depends=[abind expm fields irlba jsonlite minpack_lm mmand nloptr numDeriv plyr pracma ptw RNifti RNiftyReg signal stringr]; }; + spant = derive2 { name="spant"; version="2.21.0"; sha256="0qaspbgphlicaak1c2n7bip60dv5wib1nxhv4x8za33s1v45h549"; depends=[abind expm fields irlba jsonlite minpack_lm mmand nloptr numDeriv plyr pracma ptw RNifti RNiftyReg signal stringr]; }; sparcl = derive2 { name="sparcl"; version="1.0.4"; sha256="138krflvfdlx4hlh90mswds51i8aw2vv00gm5lgkfsvxj4w324jg"; depends=[]; }; spark_sas7bdat = derive2 { name="spark.sas7bdat"; version="1.4"; sha256="1s1hd6hvjxnfb3w10v93pggijmm2h4rcsf7ckl34j2sw9bvv7zka"; depends=[sparklyr]; }; sparkavro = derive2 { name="sparkavro"; version="0.3.0"; sha256="0g6ac9msfbx8f8j8rj0hvlxjsn317zyam207q7i8kf0hshs1r58f"; depends=[DBI dplyr sparklyr]; }; sparkbq = derive2 { name="sparkbq"; version="0.1.1"; sha256="0gccm8q5a45k9zm8f90r7fhcmriq8d038p022k7cikbr6rqsrmyh"; depends=[sparklyr]; }; sparkhail = derive2 { name="sparkhail"; version="0.1.1"; sha256="1a9p9i7fs6l9rx5ha6akjjl7qhfak01xsjg28ysv0imikmwp6hy7"; depends=[dplyr sparklyr sparklyr_nested]; }; sparkline = derive2 { name="sparkline"; version="2.0"; sha256="0lrr1lm7603di7x3mf53cp13d9ssjh9gmb43wa6z9yqapis2djm2"; depends=[htmltools htmlwidgets]; }; - sparklyr = derive2 { name="sparklyr"; version="1.8.4"; sha256="0xc38xq8izpg0fh4kjb5f223jvhrczs66aydw32kyk6mx07c43ch"; depends=[config DBI dbplyr dplyr generics globals glue httr jsonlite openssl purrr rappdirs rlang rstudioapi tibble tidyr tidyselect uuid vctrs withr xml2]; }; + sparklyr = derive2 { name="sparklyr"; version="1.8.6"; sha256="1yp3hwi1rhxx8sdhibcnjxsz1sd5jhfxn6cy9bphkwadrd19pn63"; depends=[config DBI dbplyr dplyr generics globals glue httr jsonlite openssl purrr rlang rstudioapi tidyr tidyselect uuid vctrs withr xml2]; }; sparklyr_flint = derive2 { name="sparklyr.flint"; version="0.2.2"; sha256="0sszblvgxi8l8wlic5nrnm4pc9m0byyvayrja2476vnz0pqliv69"; depends=[dbplyr dplyr rlang sparklyr]; }; sparklyr_nested = derive2 { name="sparklyr.nested"; version="0.0.4"; sha256="185cq40958fgwrng14ifil1vwrni5nn6haxfknzarhn805hfkv7c"; depends=[dplyr jsonlite listviewer purrr rlang sparklyr tidyselect]; }; sparktex = derive2 { name="sparktex"; version="0.1"; sha256="0r6jnn9fj166pdhnjbsaqmfmnkq0qr1cjprihlnln9jad05mrkjx"; depends=[]; }; sparktf = derive2 { name="sparktf"; version="0.1.0"; sha256="0jd018n7553q0ldv6whxbj2s38myig0m8zq4fbp8fsv34q5wnsx4"; depends=[sparklyr]; }; sparkwarc = derive2 { name="sparkwarc"; version="0.1.6"; sha256="0nzw6lgjrgqd1hj46jd52s8s3vdb7q2nc500jlgd0ydrr12zd123"; depends=[DBI Rcpp sparklyr]; }; - sparkxgb = derive2 { name="sparkxgb"; version="0.1.1"; sha256="1h7jk76v9wfm8qzqy6lhsmsp767wydwba9xyqszndl88295iac1j"; depends=[forge sparklyr]; }; + sparkxgb = derive2 { name="sparkxgb"; version="0.2.0"; sha256="0rfj22ipp78nf6baa6rjzdphb6y7nrg07h5d3f2npdnirigihb3b"; depends=[fs magrittr rlang sparklyr vctrs]; }; sparr = derive2 { name="sparr"; version="2.3-10"; sha256="03dp6gvkpw8vjsf0p4igr2q4lgahn24j5f94h43jdrm4ppz860zh"; depends=[doParallel foreach misc3d spatstat spatstat_explore spatstat_geom spatstat_random spatstat_utils]; }; sparrpowR = derive2 { name="sparrpowR"; version="0.2.8"; sha256="0lzsm04m80l9h20xc1ifzw30fzbmg3xqspf1arzw5hk5081iid0q"; depends=[doFuture doRNG fields foreach future iterators lifecycle sparr spatstat_geom spatstat_random terra]; }; sparseBC = derive2 { name="sparseBC"; version="1.2"; sha256="0a1siyi9kc805qji4alnw3c21spf4iw4wpsbfl50zvs52p8vl8w2"; depends=[fields glasso]; }; + sparseCov = derive2 { name="sparseCov"; version="0.0.1"; sha256="1zgqfjahlbbwimxcn7l0jn316xd2a65s8gy4pck0aksyfqh56kb1"; depends=[Matrix mvnfast Rfast sparseMVN]; }; sparseDFM = derive2 { name="sparseDFM"; version="1.0"; sha256="0w4xn0hyk3l94b9nplbhlbzkjkh2fx4cyqyjjn5x6dpkf1wj9aaz"; depends=[ggplot2 Matrix Rcpp RcppArmadillo]; }; sparseEigen = derive2 { name="sparseEigen"; version="0.1.0"; sha256="0vqcy61rarmp3liz8fr3vs3y40hkb3wfw89b5xsj1byaiap4772s"; depends=[]; }; sparseFLMM = derive2 { name="sparseFLMM"; version="0.4.1"; sha256="174lnhqig7m6fjfsj114ld059z9mjih3jzm5cq8iscxnhr9m11lr"; depends=[data_table MASS Matrix mgcv refund]; }; @@ -18444,7 +18734,6 @@ in with self; { sparseR = derive2 { name="sparseR"; version="0.2.3"; sha256="1q77n45kl1hqx5a6cr4hschj8zv0ymw8v7yvm748sdplan2dj417"; depends=[dplyr magrittr ncvreg recipes rlang]; }; sparseSEM = derive2 { name="sparseSEM"; version="4.0"; sha256="15pgh5x01inyl8kxaqsz9hf7iv3splzarch89yz1nappv86c7khq"; depends=[]; }; sparseSVM = derive2 { name="sparseSVM"; version="1.1-6"; sha256="0b0qiikjyyh9qfd4jl69zqnlp7adxq63mwsxvgwvyc0pv5ccg8i0"; depends=[]; }; - sparsebnUtils = derive2 { name="sparsebnUtils"; version="0.0.8"; sha256="1x1phd33r3ci72sbm0pkmigwbi4x59pdz8n5919119mkxdf740vs"; depends=[Matrix nnet]; }; sparsediscrim = derive2 { name="sparsediscrim"; version="0.3.0"; sha256="1fzvki3az1y5bz6d7lygv3hjbzn17gq8g2s7xqmldlpq1v4dhjar"; depends=[bdsmatrix corpcor dplyr ggplot2 mvtnorm rlang]; }; sparsegl = derive2 { name="sparsegl"; version="1.0.2"; sha256="0c5iqhq3rn5wsy8a5lj37b4spqhy46d7d5k5q3kn034amml4cyfb"; depends=[cli dotCall64 ggplot2 magrittr Matrix rlang RSpectra tidyr]; }; sparseinv = derive2 { name="sparseinv"; version="0.1.3"; sha256="06inzix9m7b5g7c97lyvyl2g7fdr4iz60791hl2w9mah7nd6bfja"; depends=[Matrix Rcpp spam]; }; @@ -18456,50 +18745,54 @@ in with self; { sparsesvd = derive2 { name="sparsesvd"; version="0.2-2"; sha256="0dnqjqypjwac8aqdqsqdgcd70lyrfv6idz8q2kzjiv1sxrlwqh5v"; depends=[Matrix]; }; sparsevar = derive2 { name="sparsevar"; version="0.1.0"; sha256="1kcy6bm04mccky529nryy5l001bv71hx304ysiabl4myakw0rwy7"; depends=[corpcor doParallel ggplot2 glmnet Matrix mvtnorm ncvreg picasso reshape2]; }; sparsevb = derive2 { name="sparsevb"; version="0.1.0"; sha256="1cigq8hwymrrkiy3iyrxsjjbj228ahrd7mq9lqar4jlb925jzqx4"; depends=[glmnet Rcpp RcppArmadillo RcppEnsmallen selectiveInference]; }; + sparsevctrs = derive2 { name="sparsevctrs"; version="0.1.0"; sha256="18w5d1ggyxvwm6rcf0bspsblf6s5m0snr4pf22y9sqfjb282vdz0"; depends=[cli rlang vctrs]; }; sparsio = derive2 { name="sparsio"; version="1.0.1"; sha256="181kzs9x3h497c7shfalbzrjz05bkj7mmjh9nyphxyi2jjrr6y1q"; depends=[Matrix Rcpp]; }; sparta = derive2 { name="sparta"; version="0.8.4"; sha256="109i8yhv8snhpccrhxy1k8xcy9jj8m3li2d7vaylvxbrlnc26d89"; depends=[Rcpp RcppArmadillo]; }; sparvaride = derive2 { name="sparvaride"; version="0.1.0"; sha256="17skm44cdv540jik8lv5y0dp6yzjgy775vjzq3dv1jv58nqjvps1"; depends=[Rcpp RcppArmadillo]; }; spass = derive2 { name="spass"; version="1.3"; sha256="1c148z0i3d185hnf54xmgppjrblv3b2s3sm0lmj78gvav04mj5s4"; depends=[geepack MASS multcomp mvtnorm Rcpp]; }; - spatPomp = derive2 { name="spatPomp"; version="0.34.2"; sha256="1d4zdwxd2sy6c3z316izm9g0rp42q09694h4m0cid0m04779qs2a"; depends=[abind dplyr foreach ggplot2 magrittr pomp rlang stringr tidyr]; }; + spatPomp = derive2 { name="spatPomp"; version="0.35.0"; sha256="0zz6xbbxrj287mjphhq21jpmnbdm60fii13sv8dg8v95l4lhi8pl"; depends=[abind dplyr foreach ggplot2 pomp rlang stringr tidyr]; }; spate = derive2 { name="spate"; version="1.7.5"; sha256="114amd3rh9ns6pyh92c5n991904mfwd6vi5cljzm2w3rhyf9vjci"; depends=[mvtnorm truncnorm]; }; spatgeom = derive2 { name="spatgeom"; version="0.3.0"; sha256="1z6haqqzghji6703crs69nvqx93h19bdkw0frpmrcxa60fxm0kyr"; depends=[cowplot dplyr ggplot2 lwgeom purrr scales sf]; }; spatgraphs = derive2 { name="spatgraphs"; version="3.4"; sha256="1xiq4a8br46qk19k23kkb6l1b7ciw9lmmrvwfznwkamwps6dwlg8"; depends=[Matrix Rcpp]; }; spathial = derive2 { name="spathial"; version="0.1.2"; sha256="1vwzcwpmx8kwv821vjf940qd5am3k0shf1s14jva71mgxs70ddmb"; depends=[class igraph irlba knitr MASS matrixStats pracma rmarkdown Rtsne]; }; + spaths = derive2 { name="spaths"; version="1.1.2"; sha256="08gzw4lbk288230309g1craf4jm5xv4kqxcbpy649g1cdzqq4lf1"; depends=[data_table Rcpp]; }; spatial = derive2 { name="spatial"; version="7.3-17"; sha256="1msxbxz50qmzjxgix2vcq0f50b4cdvj8nz3qlilp397jrzc3w07i"; depends=[]; }; spatialCovariance = derive2 { name="spatialCovariance"; version="0.6-9"; sha256="1m86s9a059spp97y37dcirrgjshcqzpdj11cq92vji624w4nrhlb"; depends=[]; }; spatialEco = derive2 { name="spatialEco"; version="2.0-2"; sha256="0z5m78x72if7bbhfjb92xv2qg4i7vh5hq9w5djd615piin9qwfsk"; depends=[sf terra]; }; spatialRF = derive2 { name="spatialRF"; version="1.1.4"; sha256="1lbwk7ziv292kxkz6rpr44jij3q13ljmqaccq56x6c2l8wkxl583"; depends=[doParallel dplyr foreach ggplot2 huxtable magrittr patchwork ranger rlang tibble tidyr tidyselect viridis]; }; - spatialTIME = derive2 { name="spatialTIME"; version="1.3.4-3"; sha256="0ya7kzi79c3nimx6cjki76g5dzlwi49zczd3wmn25jcxjxknr6da"; depends=[crayon dixon dplyr furrr future ggplot2 magrittr pbmcapply purrr RColorBrewer scales spatstat_explore spatstat_geom stringr tibble tidyr tidyselect]; }; + spatialTIME = derive2 { name="spatialTIME"; version="1.3.4-5"; sha256="0i5fcy2q53612kq1qjg2sp10lwsiva6nay0v2jl2mw28zx6p22s9"; depends=[crayon dixon dplyr furrr future ggplot2 magrittr pbmcapply purrr RColorBrewer scales spatstat_explore spatstat_geom spatstat_univar stringr tibble tidyr tidyselect]; }; spatialising = derive2 { name="spatialising"; version="0.6.0"; sha256="0q2gj16crhr1s92pazj6zbhr03xjp0pqwdc64qanpxmv4sbm65wq"; depends=[comat Rcpp terra]; }; spatialprobit = derive2 { name="spatialprobit"; version="1.0.4"; sha256="0smb4k366xf7yzxxbk85963vi0jrk9jz83v7b2l1djhk4gxp7qm4"; depends=[Matrix mvtnorm spatialreg spdep tmvtnorm]; }; - spatialreg = derive2 { name="spatialreg"; version="1.3-2"; sha256="0qvf85l287qak2cs0l87rl4vacphnanvj8cgs82aiq6vkl52igp3"; depends=[boot coda LearnBayes MASS Matrix multcomp nlme sf spData spdep]; }; + spatialreg = derive2 { name="spatialreg"; version="1.3-4"; sha256="0sgvcqswfpa9aq1x2ir1d5vg52gny1r1l15g66nk0113vvbrz982"; depends=[boot coda LearnBayes MASS Matrix multcomp nlme sf spData spdep]; }; spatialrisk = derive2 { name="spatialrisk"; version="0.7.1"; sha256="1r6dr4n3d0x1yb4vcbfq0aqdqmy0h4n73snl86wrk86agvi5rmwp"; depends=[classInt colourvalues data_table dplyr fs GenSA geohashTools ggplot2 leafem leafgl leaflet Rcpp RcppProgress sf tmap units viridis]; }; spatialsample = derive2 { name="spatialsample"; version="0.5.1"; sha256="0pcwf15ani4r8j3zgqz093jkimazzwi0218qx18xglymk180hhcp"; depends=[cpp11 dplyr ggplot2 glue purrr rlang rsample sf tibble tidyselect units vctrs]; }; spatialwarnings = derive2 { name="spatialwarnings"; version="3.0.3"; sha256="03a0gb8v6028v6q5w3iap8fn9nkb2rpnabqgzmr2dyxnpfgr9dn3"; depends=[future future_apply ggplot2 gsl plyr Rcpp RcppArmadillo segmented]; }; spatialwidget = derive2 { name="spatialwidget"; version="0.2.5"; sha256="01w0iwwjfbb8cxfs3l1vxlay8x6694d7c7ksrfrdd003h7dxwksj"; depends=[BH colourvalues geojsonsf geometries interleave jsonify rapidjsonr Rcpp sfheaders]; }; spatsoc = derive2 { name="spatsoc"; version="0.2.2"; sha256="0aj9kg9013m0j3nx5qr2mvwczskkk0wy19yx1pb33wnqvhv2w0n0"; depends=[adehabitatHR data_table igraph sf units]; }; - spatstat = derive2 { name="spatstat"; version="3.0-7"; sha256="1h6fnri3ma5kgzkwv4lr2i2jvsx8sg4am3rgzb29h7l89x59yxrk"; depends=[spatstat_data spatstat_explore spatstat_geom spatstat_linnet spatstat_model spatstat_random spatstat_utils]; }; + spatstat = derive2 { name="spatstat"; version="3.0-8"; sha256="0ghhj161n7bxd6hpk3hz6lq2gv8bwx5clrdp729lfyi9d1xjw162"; depends=[spatstat_data spatstat_explore spatstat_geom spatstat_linnet spatstat_model spatstat_random spatstat_utils]; }; spatstat_Knet = derive2 { name="spatstat.Knet"; version="3.0-2"; sha256="1yvdasrxmsa2m9016kclb33kv5893fsz5rcr416yhpf6jixdsfh8"; depends=[Matrix spatstat spatstat_data spatstat_explore spatstat_geom spatstat_linnet spatstat_model spatstat_random spatstat_sparse spatstat_utils]; }; spatstat_data = derive2 { name="spatstat.data"; version="3.0-4"; sha256="1s0ns5nhgigfn3d9rdy3f4ymnwj1w71v26iphkhwxddm9qzk80yi"; depends=[Matrix spatstat_utils]; }; spatstat_explore = derive2 { name="spatstat.explore"; version="3.2-7"; sha256="08740yclqv86mnds0a8xhn6r2qdqhw4qgkbrb2cl93crqwcdkr2f"; depends=[abind goftest Matrix nlme spatstat_data spatstat_geom spatstat_random spatstat_sparse spatstat_utils]; }; spatstat_geom = derive2 { name="spatstat.geom"; version="3.2-9"; sha256="05ymr4h6g5kp6kinm8qi6mcwi51d2rp671cm3hqgyrhk91k72cx7"; depends=[deldir polyclip spatstat_data spatstat_utils]; }; spatstat_gui = derive2 { name="spatstat.gui"; version="3.0-1"; sha256="1y6z3gdad0nhqg494b5pjq4h0mr3mcrhnnc0chy56lf8chb6p5jb"; depends=[rpanel spatstat spatstat_data spatstat_explore spatstat_geom spatstat_linnet spatstat_model spatstat_random spatstat_utils]; }; - spatstat_linnet = derive2 { name="spatstat.linnet"; version="3.1-4"; sha256="1inqirh58q19mvf4wvnhm31418xfzd1ysvcxwda3g11pv8jq2g3d"; depends=[Matrix spatstat_data spatstat_explore spatstat_geom spatstat_model spatstat_random spatstat_sparse spatstat_utils]; }; + spatstat_linnet = derive2 { name="spatstat.linnet"; version="3.1-5"; sha256="18zp6dsddc9js4ck6iqh5li4hw5qbyvh16vsa9vqk4ccgc1krl57"; depends=[Matrix spatstat_data spatstat_explore spatstat_geom spatstat_model spatstat_random spatstat_sparse spatstat_utils]; }; spatstat_local = derive2 { name="spatstat.local"; version="5.0-1"; sha256="02ip6d2mr07n3lv4i5xdmb1j55syk5hwjwr7j81ibxkp3gj8gm61"; depends=[spatstat spatstat_data spatstat_explore spatstat_geom spatstat_model spatstat_random spatstat_sparse spatstat_utils tensor]; }; spatstat_model = derive2 { name="spatstat.model"; version="3.2-11"; sha256="0hvnqig6cdrp8hk2fkcajag3hrqsamfr6h66wn4cs30iblic23bh"; depends=[abind goftest Matrix mgcv nlme rpart spatstat_data spatstat_explore spatstat_geom spatstat_random spatstat_sparse spatstat_utils tensor]; }; spatstat_random = derive2 { name="spatstat.random"; version="3.2-3"; sha256="19rl757lccr169fj00zmhb1a20bxw4kljzb81hbbr5xhj0za6lp0"; depends=[spatstat_data spatstat_geom spatstat_utils]; }; spatstat_sparse = derive2 { name="spatstat.sparse"; version="3.0-3"; sha256="0scdk3ns4nl1v1avbggnsinfpvl4i8391qy3x1iwxvkimr14xg3b"; depends=[abind Matrix spatstat_utils tensor]; }; - spatstat_utils = derive2 { name="spatstat.utils"; version="3.0-4"; sha256="1i1w1ys29s22jfjvliqnbw3zi6zar8bxxz3r8za182p2w0wqwhax"; depends=[]; }; + spatstat_univar = derive2 { name="spatstat.univar"; version="2.0-3"; sha256="0lsn7hjvrzfz0nzp601izm856ccm14zqwx8gpw84n772b9lmz4z8"; depends=[spatstat_utils]; }; + spatstat_utils = derive2 { name="spatstat.utils"; version="3.0-5"; sha256="15pm4fpc3fvqkh9kh4i0pgalxbxfp9y3blsyaw37s07v41gnd67b"; depends=[]; }; spatsurv = derive2 { name="spatsurv"; version="2.0-1"; sha256="17s88w8ikrazhjbilvwcw1i1r9b77ci7f69jgr8lni7dd7l0b0hy"; depends=[fields iterators lubridate Matrix raster RColorBrewer sf sp spatstat_explore spatstat_geom spatstat_random stringr survival]; }; spbabel = derive2 { name="spbabel"; version="0.6.0"; sha256="0y30v7p54mmy43w7wclhywwk1zih6h66hkgd7dc101yiqvnx4m84"; depends=[dplyr pkgconfig rlang sp tibble]; }; - spc = derive2 { name="spc"; version="0.6.7"; sha256="02dw1hh3ksx119wf7qkg01m7h60pmsc3vkryw5fikyxyfz871ldl"; depends=[]; }; + spbal = derive2 { name="spbal"; version="1.0.0"; sha256="0wh0d1zfb1368bzpg0cjy0wa0ms4x6xr9y6n773prr8r8vs6fp09"; depends=[Rcpp RcppThread sf units]; }; + spc = derive2 { name="spc"; version="0.6.8"; sha256="1w63rwalw6m4dd44nhpdvvwawj1i8001vli9359a6q50m96i4ij5"; depends=[]; }; spc4sts = derive2 { name="spc4sts"; version="0.6.3"; sha256="0lvsixjgdfgnr7y7kk2227bcs8sqy2mrpw50dwwgdjvm5q0sr7l7"; depends=[gridExtra rpart]; }; spcadjust = derive2 { name="spcadjust"; version="1.1"; sha256="016i3zaaq800x4niz4fixa57nfj1m10sz5xskff4vq4v9fjn2sl0"; depends=[]; }; spcosa = derive2 { name="spcosa"; version="0.4-2"; sha256="1y3qbz9kslb5k7h62pk7g2lk69y9i625r2q0dychhj91fdqx30n4"; depends=[ggplot2 rJava sp]; }; spcov = derive2 { name="spcov"; version="1.3"; sha256="037pl4kh87b85v7q1nrxcm7vw5f3pr7m2b76424ic9sxa56wfdnp"; depends=[]; }; spcr = derive2 { name="spcr"; version="2.1.1"; sha256="09clpz0vqssagmfjcrs2qp5i61ppjr9nxn342l6gbdnbw91wc7f3"; depends=[]; }; spd = derive2 { name="spd"; version="2.0-1"; sha256="00zxh4ri47b61jkcjf5idl9hhlfld6rhczsnhmjsax59884f2i8m"; depends=[KernSmooth]; }; - spdep = derive2 { name="spdep"; version="1.3-3"; sha256="06j26v0w33vyh5ilq1cn0rh8z0lrr3n0lxwxc7bsk2w524d3v6yw"; depends=[boot deldir e1071 s2 sf sp spData units]; }; + spdep = derive2 { name="spdep"; version="1.3-5"; sha256="09p6aqzg109vnbh56nf0v4qj34l4dmh8ak3d9y7l04mwvl3gm3ms"; depends=[boot deldir e1071 s2 sf sp spData units]; }; spdesign = derive2 { name="spdesign"; version="0.0.3"; sha256="0gz7862pp18cliz8n6grjzjq0ldy5cxln16w1i18ifqpjdhss53s"; depends=[cli dplyr future matrixStats randtoolbox stringr tibble]; }; spdl = derive2 { name="spdl"; version="0.0.5"; sha256="185qzlwac7acq126xpvcd71nv25zgkrdr8m73gv2sn1zxj78hyid"; depends=[RcppSpdlog]; }; spdownscale = derive2 { name="spdownscale"; version="0.1.0"; sha256="0pl560km9629iwy13h7359ab7ixzs09hg986kvk0xbnc348srb86"; depends=[]; }; @@ -18507,7 +18800,7 @@ in with self; { spdynmod = derive2 { name="spdynmod"; version="1.1.6"; sha256="1zbh1p3lmil4vsrw7q6af3p5xqvhw2k9hx59kbzabnzj4gy8wjk3"; depends=[animation deSolve raster sp]; }; speakr = derive2 { name="speakr"; version="3.2.2"; sha256="159ir49i2fdw5fcq93rqdhf5ij5s9sfr2ygdy2snbgnx3rgi1sfc"; depends=[cli ggplot2 lifecycle quarto readr stringr tibble]; }; speaq = derive2 { name="speaq"; version="2.7.0"; sha256="0z9a3nbfazphp090c6hg892vjq7jp4g4cij3s5wbs1q567inbmlk"; depends=[cluster data_table doSNOW foreach ggplot2 gridExtra impute MassSpecWavelet missForest reshape2 Rfast rvest xml2]; }; - spearmanCI = derive2 { name="spearmanCI"; version="1.0"; sha256="1xi51dphv91j5hgrd25sqs1li0g24cwpa1k162arw5b0qfl04f17"; depends=[emplik MASS]; }; + spearmanCI = derive2 { name="spearmanCI"; version="1.1"; sha256="0dn5gbyvw5rqqqbag16ljfwm4pc8mzyjq3fb49g7zq3c6l16wj27"; depends=[emplik MASS]; }; spec = derive2 { name="spec"; version="0.1.9"; sha256="0jsl37m912pg3dcphs8l83ywj5rr9q0s9si57nkvz64skdkypcav"; depends=[csv encode magrittr]; }; speccurvieR = derive2 { name="speccurvieR"; version="0.3.0"; sha256="01lxyc2v7schci37m1lafjqxqas9dxy614ia742i1g4mb530cch8"; depends=[combinat dplyr fixest ggplot2 magrittr pbapply stringr tidyr]; }; specieschrom = derive2 { name="specieschrom"; version="1.0.0"; sha256="0h2hgh0amvv7in5hplh6x3k95bnjm6d24nzmc57yihcsqjndli9k"; depends=[colorRamps ggplot2 reshape2]; }; @@ -18523,14 +18816,13 @@ in with self; { spectralGraphTopology = derive2 { name="spectralGraphTopology"; version="0.2.3"; sha256="09nsszm2f6q8kz84kn7ihhb627q186jwpvr6fm633l8app4ilf2x"; depends=[MASS Matrix progress Rcpp RcppArmadillo RcppEigen rlist]; }; spectralR = derive2 { name="spectralR"; version="0.1.3"; sha256="1kz47gydsqa3g47m6z546sf5jnfscsly1v3dpj97ns0qf5sh57bp"; depends=[dplyr geojsonio ggplot2 reshape2 rgee rlang sf tibble tidyr]; }; spectre = derive2 { name="spectre"; version="1.0.2"; sha256="1n5z7970pzhavdf7qhxsb7gzz8dsrwa1pwyxf8n6sxvmdbk8v2z1"; depends=[ggplot2 Rcpp RcppProgress testthat]; }; - spectrolab = derive2 { name="spectrolab"; version="0.0.18"; sha256="1iwhsz19yfvf71zg1ifg9d3xb9rjbng1h5g7vfakm1jckin9mrv2"; depends=[RColorBrewer shiny shinyjs]; }; sped = derive2 { name="sped"; version="0.3"; sha256="0dxfr9fpwmnl0nq6szg5ph1mfl2qp28n4d2kkq092qyzbvk74rnp"; depends=[pooh]; }; spedecon = derive2 { name="spedecon"; version="0.1"; sha256="06vyyznf5xlwqb662plvnm7pjjwwsb6h745yr9izjam1zyavvq1c"; depends=[quadprog]; }; speech = derive2 { name="speech"; version="0.1.5"; sha256="1jxlk24vspsbk27p63kccadbf09vvb7xxx0wahj7908ygg7q5a1f"; depends=[dplyr lubridate magrittr pdftools purrr rvest stringr tibble tidyr tm]; }; speechbr = derive2 { name="speechbr"; version="2.0.0"; sha256="0jf0zj64hm1zxbpcry1iff3nddf2wl315whzcbzj8936qfam92p5"; depends=[abjutils dplyr glue httptest httr janitor lubridate magrittr purrr rlang rvest stringr tibble tidyr xml2]; }; speedglm = derive2 { name="speedglm"; version="0.3-5"; sha256="0jxvh9gbhip1hj7hzjs5fj8iw6ibvl6hc0llcg2j9wqgq5vkcrpq"; depends=[biglm MASS Matrix]; }; speedycode = derive2 { name="speedycode"; version="0.3.0"; sha256="0k9pnrmv5zmiyia1js3va2gx7nwbg2b35jl4r1lm2hwl3c901jfw"; depends=[dplyr purrr stringr]; }; - speedytax = derive2 { name="speedytax"; version="1.0.3"; sha256="13h3zcxc28a830pqhbkq1val1rli0khhalqdnizv7gyxjgd38qph"; depends=[dplyr phyloseq Rcpp stringr tibble tidyr]; }; + speedytax = derive2 { name="speedytax"; version="1.0.4"; sha256="0iqgn0mxw5ygnnjz1sbmpz1wqcx1gx5xpncbl93ra8k7qmidw7gk"; depends=[dplyr phyloseq Rcpp stringr tibble tidyr]; }; spef = derive2 { name="spef"; version="1.0.9"; sha256="115lmv2a21ws1mj22v1fbk72mqn3siqmw3frbg4nci96lnyr7qh6"; depends=[BB ggplot2 nleqslv plyr sm SQUAREM survival]; }; speff2trial = derive2 { name="speff2trial"; version="1.0.5"; sha256="18g4ap6m9li42amj1aa9dazp2sqz161zfijklmnphq63f2b5gczc"; depends=[leaps survival]; }; spellcheckr = derive2 { name="spellcheckr"; version="0.1.2"; sha256="09snc1ymzr4njnr3w502b84dqwjjd414higjxqi48jvh27br5k1l"; depends=[data_table dplyr stringr]; }; @@ -18542,14 +18834,14 @@ in with self; { spfa = derive2 { name="spfa"; version="1.0"; sha256="0xkq5679whrvxnbbcbari533jpima27gcyqbszvkg0z95q956ndj"; depends=[Rcpp RcppArmadillo]; }; spfda = derive2 { name="spfda"; version="0.9.1"; sha256="094j68gyy5yw7d2mn3n864h6vf8nd76x9ypfzc1liggnw7qs0fdl"; depends=[mathjaxr]; }; spfilteR = derive2 { name="spfilteR"; version="1.1.5"; sha256="1s11d88y4jwzd85lyircgz9j67mwbqld1jicynxb7wayk8akfyf4"; depends=[]; }; - spflow = derive2 { name="spflow"; version="0.1.0"; sha256="0a5nirccwcc2z4dn3gxdlhdjz7sxv1r23clawy0kwn4ggdkmphp1"; depends=[coda Matrix Rdpack RSpectra]; }; spgs = derive2 { name="spgs"; version="1.0-4"; sha256="0ln0fhxiavzwp5qlz5akk5896dyznwbz23f816vkjnxmw7pi4p70"; depends=[]; }; - spgwr = derive2 { name="spgwr"; version="0.6-36"; sha256="1fkz37zwmarcsl101z172kiar48zyi6s216lhc8zc39g4kqpj99a"; depends=[sp spData]; }; + spgwr = derive2 { name="spgwr"; version="0.6-37"; sha256="1lxl4byihwih0iban0ypsh7p7vzbprjzl4xv62181dbsjm5xhmyk"; depends=[sp spData]; }; sphereTessellation = derive2 { name="sphereTessellation"; version="1.2.0"; sha256="1b8wxbh44qd0rznjln3icp9k4jy598rva9kwcgzscpjm5j86r97w"; depends=[BH colorsGen Polychrome Rcpp RcppCGAL RcppEigen rgl]; }; spherepc = derive2 { name="spherepc"; version="0.1.7"; sha256="0y05ylyxzawgjlivaxs513mfjjfmw6fm98b83sq76n8yw56pr9ny"; depends=[geosphere rgl sphereplot]; }; sphereplot = derive2 { name="sphereplot"; version="1.5.1"; sha256="1jxjd66hcyqdizzikxsncswswj7c1rprigz1xii82rkcms8iygzm"; depends=[rgl]; }; + spheresmooth = derive2 { name="spheresmooth"; version="0.1.0"; sha256="1xf1cg3y7dvx274ccmia97lj278ghpx2p1ayqrfxxl1cnw4p53rv"; depends=[]; }; sphet = derive2 { name="sphet"; version="2.0"; sha256="1qr4n4kbmc58qmr8niqq3mnwv18x9q2f24c1kg67asf7n3pnmy77"; depends=[coda Matrix mvtnorm nlme sf sp spatialreg spData spdep stringr]; }; - sphunif = derive2 { name="sphunif"; version="1.3.0"; sha256="1m4id7h3jd0r8p9j5ip4d5r79lk27j7xk4iwizjapd74i0vm84az"; depends=[doFuture doRNG foreach future gsl Rcpp RcppArmadillo rotasym]; }; + sphunif = derive2 { name="sphunif"; version="1.4.0"; sha256="125w91cz60j3lkx8dm74c8gh67k5j2k8mypx7rihym9rsdibdric"; depends=[doFuture doRNG foreach future gsl Rcpp RcppArmadillo rotasym]; }; spidR = derive2 { name="spidR"; version="1.0.2"; sha256="09n0fz9iqc3n4c72h9hyc0ybzaqzy4l1rypvaig5kl98kx5nng1i"; depends=[httr jsonlite rgbif rworldmap rworldxtra]; }; spider = derive2 { name="spider"; version="1.5.0"; sha256="1y034v42jxjl3vj87iz5kaizq7fwppmn56z7yyvrrmk5ps4nqr1j"; depends=[ape pegas]; }; spiderbar = derive2 { name="spiderbar"; version="0.2.5"; sha256="0yhxm3ns9xymm6msklpm1x0ahcq7gkfp1w92aafk2r3pip1g3ds5"; depends=[Rcpp]; }; @@ -18564,12 +18856,11 @@ in with self; { spiralize = derive2 { name="spiralize"; version="1.0.6"; sha256="10zz0f3z033pqi9rm3kgac85i5h8ngg2cx4dlr8z5y8v08dpln6b"; depends=[circlize GetoptLong GlobalOptions lubridate]; }; spiritR = derive2 { name="spiritR"; version="0.1.1"; sha256="1fjr63rl9hwqxzgm4lkb9v74cxxpi4lrlcgjixdm7zgccm8ihdvh"; depends=[httr magrittr xml2]; }; spiro = derive2 { name="spiro"; version="0.2.1"; sha256="08v290c62x915624hydzns6qdbfxh08zsbgffkgd89inn2bwj55g"; depends=[cowplot digest ggplot2 knitr readxl signal xml2]; }; - splancs = derive2 { name="splancs"; version="2.01-44"; sha256="0wf1vr8ykcgfcvh4ajqpnpj2qa9l277n2qmnq5f95234npwnvm08"; depends=[sp]; }; + splancs = derive2 { name="splancs"; version="2.01-45"; sha256="1lvn9gm2n7ic4cxz255jls33kkbblrdcka87v99apskz3pbg3k4b"; depends=[sp]; }; splash = derive2 { name="splash"; version="1.0.2"; sha256="1iviwf7dxlrbfzjigl8wd8q3i0jkdnb7mr8zy6zg0w81p4416q42"; depends=[]; }; spldv = derive2 { name="spldv"; version="0.1.3"; sha256="10bvx4z2b0kl2dl91dvr611cfp28dvch41vj9z1k1qlw03ybqpr8"; depends=[car Formula MASS Matrix maxLik memisc numDeriv spatialreg sphet]; }; - splines2 = derive2 { name="splines2"; version="0.5.1"; sha256="0aac9p93sngr4ydyg0s9v3p2w444d09ghb3lan3r14j9v8i1aw1f"; depends=[Rcpp RcppArmadillo]; }; + splines2 = derive2 { name="splines2"; version="0.5.2"; sha256="1wvj57b92qpqnn4bmd5gbbnnds32s6bm04bq72c1q3fr069r9r8b"; depends=[Rcpp RcppArmadillo]; }; splinetree = derive2 { name="splinetree"; version="0.2.0"; sha256="0gqb3kwca42crrx6fj42ryl5pkxvankhp1chdlvi5lgg8mzmqsnl"; depends=[ggplot2 mclust mosaic nlme rpart treeClust]; }; - splitFeas = derive2 { name="splitFeas"; version="0.1.0"; sha256="1cfiis32h5kkp8r1mndmj4xss9gw96vdzk7q68q3jhbwqiaxp9rp"; depends=[corpcor matrixStats]; }; splitSelect = derive2 { name="splitSelect"; version="1.0.3"; sha256="03gziy1hhm35hw8q2w9w6d4x2zci5q2wds0mkzihvfm0wkshi4fw"; depends=[doParallel foreach glmnet multicool]; }; splitTools = derive2 { name="splitTools"; version="1.0.1"; sha256="1qm9rippq5726vgsdcim4xvssv5r00d46zjzbcg06vy71klgrc6p"; depends=[]; }; splitfngr = derive2 { name="splitfngr"; version="0.1.2"; sha256="0cf9y68m72j890a732m0n784nr12ydljr6s8i80f0in6q8lmw8ls"; depends=[lbfgs]; }; @@ -18577,29 +18868,28 @@ in with self; { splithalfr = derive2 { name="splithalfr"; version="2.2.2"; sha256="0zy7p2cvxbq2p24vyi55hl4qcj42igfbsapmx3xh15rpcdhzsmm0"; depends=[bcaboot dplyr psych rlang tibble]; }; splitstackshape = derive2 { name="splitstackshape"; version="1.4.8"; sha256="0mpyf2kkfdl69pdc6brl1r6101vyc6pgr7z17s55ppg3y71k4q35"; depends=[data_table]; }; splm = derive2 { name="splm"; version="1.6-5"; sha256="0zwyl8pyx5ldr1rwqlkmzzbjc7r4dp261lsvw4b37ydm0sdhsizk"; depends=[bdsmatrix MASS Matrix maxLik nlme plm spam spatialreg spdep stringr]; }; - splmm = derive2 { name="splmm"; version="1.1.3"; sha256="0z04arwzy5169f6bhc8cbdc07zcmd5safpii5a3g7bqallmzipnr"; depends=[emulator ggplot2 gridExtra MASS miscTools penalized plot3D Rcpp RcppArmadillo]; }; + splmm = derive2 { name="splmm"; version="1.2.0"; sha256="1qnzm1mnx5i0q1a5534s5n6fwgs95fdknc6k5s65z9jqd33n39c4"; depends=[emulator ggplot2 gridExtra MASS miscTools penalized plot3D progress Rcpp RcppArmadillo]; }; splot = derive2 { name="splot"; version="0.5.4"; sha256="14x2fsf41izlb99pxypgy3f4yaj33j04a68nan0f9545fjl78v4x"; depends=[]; }; spls = derive2 { name="spls"; version="2.2-3"; sha256="0bmb0ai5z80njhypd342i711x0bdkwcvlyn374lyyzj8h3d97mmv"; depends=[MASS nnet pls]; }; splus2R = derive2 { name="splus2R"; version="1.3-5"; sha256="097bpzazw5ryb6izbmz2sdlghn3qvh7c7wsnn0j08j65f9bfmc77"; depends=[]; }; splutil = derive2 { name="splutil"; version="2022.6.20"; sha256="02hic08ckjg7iyjcyjncrkvjnpbpxk0v8g1yxy2s1vaw0mmfj4cz"; depends=[data_table ggplot2 magrittr]; }; spm = derive2 { name="spm"; version="1.2.2"; sha256="0slpy3cmv5l2gbgvy3yfdhzm73427bl39shadpmf3jkkbflcczsn"; depends=[biomod2 gbm gstat psy randomForest ranger sp]; }; spm2 = derive2 { name="spm2"; version="1.1.3"; sha256="1fac131zg5z7jxbkjy6745b4pggpmkjyl9iyq15yr7yzfs77yz62"; depends=[e1071 fields gbm glmnet gstat nlme randomForest sp spm]; }; - spmodel = derive2 { name="spmodel"; version="0.5.1"; sha256="1mzayk0ncd7kwjc3bdv3kl9zisd93giawl060d1fj923pz0rzcpx"; depends=[generics Matrix sf tibble]; }; + spmodel = derive2 { name="spmodel"; version="0.6.0"; sha256="0dllygmpc75s8cwxxgzy49a8098zb37k3xalk4l0n1ccfqxspf8b"; depends=[generics Matrix sf tibble]; }; spmoran = derive2 { name="spmoran"; version="0.2.3"; sha256="0gjniczvggcpgyriskcbry8hn5pbf4ga4nx6hj98kvy5qrv5dcnj"; depends=[doParallel fields FNN foreach ggplot2 Matrix rARPACK RColorBrewer sf spdep vegan]; }; - spnaf = derive2 { name="spnaf"; version="0.3.1"; sha256="06gz7gxh3r0ci1v46hgcs5a1837vqlqbg6vkcv1m5r4vp2n4hkc8"; depends=[dplyr magrittr rlang sf spdep tidyr]; }; + spnaf = derive2 { name="spnaf"; version="1.0.0"; sha256="1xiky882smpyqscdwaqgjx505f5gwpl9i419n15j90lv4f768k6q"; depends=[deldir dplyr magrittr rlang sf spdep tidyr]; }; spnn = derive2 { name="spnn"; version="1.2.1"; sha256="1yj89j7nynfyw1ikm6q5kdwdgiiwxx0aa6kgnri5wfnb4l0356l7"; depends=[MASS Rcpp RcppArmadillo]; }; spocc = derive2 { name="spocc"; version="1.2.3"; sha256="0ldr7n889jch6q4b4y2ligd3z5g4z4jdf5rk1cig86x9m5wdw57f"; depends=[crul data_table jsonlite lubridate rebird rgbif ridigbio rvertnet s2 tibble whisker wk]; }; spoiler = derive2 { name="spoiler"; version="1.0.0"; sha256="105shgv62x3qjw4477qfi79h9bdih4n8hg6wn842dyfq940wkr5b"; depends=[htmltools shiny]; }; spongebob = derive2 { name="spongebob"; version="0.4.0"; sha256="1ar5173fwx1am5rgjlnczfla6b49g0azl0h9vn89ipw7f71rr5j7"; depends=[]; }; spongecake = derive2 { name="spongecake"; version="0.1.2"; sha256="13fxizbfjvqkhkmxk5bwv2fj2xyjkbxrxicpdgwpg0wsk4dhj3s8"; depends=[ggplot2 jpeg magrittr plyr]; }; spooky = derive2 { name="spooky"; version="1.4.0"; sha256="18qlm1dvspw2n7xanrxvflgvdppva3pxrs6m56cia2klv95rn1xn"; depends=[entropy fANCOVA fastDummies ggplot2 greybox imputeTS lubridate modeest moments philentropy purrr readr scales tictoc]; }; - spork = derive2 { name="spork"; version="0.3.2"; sha256="0p9r203nnvannghlr3vggg30nmyz5j902dr7p2p2d3f1gh9vf3ss"; depends=[ggplot2 kableExtra latexpdf png]; }; + spork = derive2 { name="spork"; version="0.3.3"; sha256="035s59y1jfjyjmi7352yj04nzv29q6v48maifikdzn4b7l6mlsbg"; depends=[ggplot2 kableExtra latexpdf png]; }; sport = derive2 { name="sport"; version="0.2.1"; sha256="1vifh5x3rqnj0y7lzxhxa8jiiq9gza7r55kajcdib0hr65amwssk"; depends=[data_table ggplot2 Rcpp]; }; sportyR = derive2 { name="sportyR"; version="2.2.2"; sha256="1br7wbxr488pknqq3ik6w86rrkx5cn61jrm2b8az27zh8k362dv6"; depends=[ggfittext ggplot2 glue rlang]; }; spotidy = derive2 { name="spotidy"; version="0.1.0"; sha256="0hg8d3piiwp4q3257qsv5l41zc3c5a8mbq595ci63id8fc2q2pkd"; depends=[dplyr httr magrittr purrr]; }; spotifyr = derive2 { name="spotifyr"; version="2.2.4"; sha256="14rq4yzvly3yl1xnndpzp6mp2mmbvc0qwkx75lb85gad8271a4ij"; depends=[assertthat dplyr httr janitor jsonlite lubridate magrittr purrr readr rlang rvest stringr tibble xml2]; }; spotoroo = derive2 { name="spotoroo"; version="0.1.4"; sha256="004pjlad31xkxvl9bm4ga33ikmph93blb0qd1rpvs8s0lgi7v6pn"; depends=[cli dplyr geodist ggbeeswarm ggExtra ggplot2 ggrepel patchwork progress]; }; - spqdep = derive2 { name="spqdep"; version="0.1.3.2"; sha256="03lzp368ylkf1hrnl00kndlkmp9lwma0j9w9b3hn5glzdljhalxl"; depends=[broom dplyr ggplot2 gridExtra gt gtools igraph lwgeom magrittr Matrix purrr rgeoda rsample sf sp spatialreg spdep tidyr]; }; spray = derive2 { name="spray"; version="1.0-25"; sha256="1mdnabkrj10r4bqll0qd2h7nqpmalbwfs8kzry1wxxy0j1886fv3"; depends=[disordR magic mathjaxr partitions Rcpp]; }; spreadr = derive2 { name="spreadr"; version="0.2.0"; sha256="180dvr39i1glc0jllsnnglwrxh133q20v7px2fmdi7229pr175id"; depends=[assertthat extrafont ggplot2 igraph Matrix Rcpp]; }; spreval = derive2 { name="spreval"; version="1.1.0"; sha256="1zapfld0d6yyxqvijkb243zqin9xwqhmnznd2nnd4cp0rq3106zf"; depends=[interp timeDate]; }; @@ -18617,7 +18907,6 @@ in with self; { spsurv = derive2 { name="spsurv"; version="1.0.0"; sha256="11jlbzvzxv3d1d0nwpbii46ddvphglrxv25rw7pvxbybcx2i7k6x"; depends=[BH coda loo MASS Rcpp RcppEigen rstan rstantools StanHeaders survival]; }; spsurvey = derive2 { name="spsurvey"; version="5.5.1"; sha256="13h25mhb45s2k73a5709zlxfxylxqls0avan6d8pcp0iyrmpxjak"; depends=[boot crossdes deldir lme4 MASS sampling sf survey units]; }; spt = derive2 { name="spt"; version="2.5.1"; sha256="04j38d2b35p4798znnc49vqrg8r8bygwi07vybfj3nzimlp2mkrn"; depends=[]; }; - sptm = derive2 { name="sptm"; version="2019.11-25"; sha256="1hdymzngdppmh56dqh0k88n9hg68pbx9rgmimbz4ihnfx2plvadh"; depends=[kyotil survey survival]; }; sptotal = derive2 { name="sptotal"; version="1.0.1"; sha256="09wkcc1lbc9d0m19ncqcb3xxgl30lyii6r5nqb9rbjqyf2jl2iak"; depends=[ggplot2 viridis]; }; spuRs = derive2 { name="spuRs"; version="2.0.2"; sha256="00c0hnyrcbkbj269czxbfgmgi88y0vxzm79sxclllkzr9rdd1p53"; depends=[lattice MASS]; }; spup = derive2 { name="spup"; version="1.4-0"; sha256="045bvl2nzr78yrzp07718m5929wxmj0g4rd535f4qdaj95m137dm"; depends=[gstat magrittr mvtnorm purrr raster whisker]; }; @@ -18630,14 +18919,16 @@ in with self; { sqlparseR = derive2 { name="sqlparseR"; version="0.1.0"; sha256="0zcna9y61v1qklpnhrwgv1djg4hyx3k5an32caapszi8qm9nq3x8"; depends=[reticulate]; }; sqlscore = derive2 { name="sqlscore"; version="0.1.4"; sha256="1wvjiy7g0rxfy10vssdrv5li5sbvrin9wjy0ai0nxk503kw7g74k"; depends=[dbplyr]; }; sqlstrings = derive2 { name="sqlstrings"; version="1.0.0"; sha256="147496898m4rqa63p72axw0g0a208pcy22mdhn0s7zv0j50lilc4"; depends=[fs readr stringr]; }; - squant = derive2 { name="squant"; version="1.1.4"; sha256="1z4qi1svv6186gj3nh4z3hvjd54i7grj6ckgdyk4dmyn7zh8fw5w"; depends=[ggplot2 glmnet survival]; }; + sqltargets = derive2 { name="sqltargets"; version="0.0.1"; sha256="1lf1p0lk3z8hmfpbzprjsp77m5dszgdwzq5vhrcrg5mbr2mkz697"; depends=[cli DBI fs glue purrr readr rlang RSQLite stringr tarchetypes targets withr]; }; + squant = derive2 { name="squant"; version="1.1.5"; sha256="0ab4hrjkvd04jxfp40dz350mkv4a8a57gjf74mg631pmipw3cd5n"; depends=[ggplot2 glmnet survival]; }; squash = derive2 { name="squash"; version="1.0.9"; sha256="1x66iamj5pir6l9aqx4x7xylxxjpjrw8vcix9rbhfd0y0y2iqf7z"; depends=[]; }; squat = derive2 { name="squat"; version="0.3.0"; sha256="0a5vm1ldwysadf50jvq7p988gv9arszg2a1hppcfjvwq193ywy0g"; depends=[cli dbscan dtw fdacluster funData furrr ggplot2 ggrepel MFPCA progressr purrr Rcpp RcppArmadillo RcppEigen rlang roahd scales tibble tidyr]; }; squeezy = derive2 { name="squeezy"; version="1.1-1"; sha256="1dykp6hz056f9ajx1sg5bl89v4qmn41lsp9p9zzd9yib6d6ryfsm"; depends=[glmnet Matrix multiridge mvtnorm]; }; squid = derive2 { name="squid"; version="0.2.1"; sha256="1zpm787ifzrhww32ghi57ii37p9dssq7q7gbai9iqass78z90y2j"; depends=[arm brms data_table ggplot2 lme4 MASS plotly shiny shinyMatrix]; }; sr = derive2 { name="sr"; version="0.1.0"; sha256="0d8c7gsr48xxg7y09n0namzqp148bk4idz51d2d5xlmlzcyq74k8"; depends=[dplyr ggplot2 progress RANN vdiffr]; }; sra = derive2 { name="sra"; version="0.1.4.1"; sha256="080pdhzsf1bawi9l1bbvzdk7s9733sdlx4cpcm3whf9ffdbg6ahz"; depends=[]; }; - srcr = derive2 { name="srcr"; version="1.1.0"; sha256="1cv4j27w9lssllih0lg172x1p001sk13p9hg39579lx6rpb9l75q"; depends=[DBI dplyr jsonlite]; }; + srcpkgs = derive2 { name="srcpkgs"; version="0.1"; sha256="1j7yzm6hl98jy9jx203zkr65d2zivx3k6zhnk3fnpvvpki1ma61s"; depends=[cli devtools pkgload]; }; + srcr = derive2 { name="srcr"; version="1.1.1"; sha256="0hmlvq8rwhdv8hh7i517ml46p1hvd2idby4xx7firin8ca1829n5"; depends=[DBI dplyr jsonlite]; }; sregsurvey = derive2 { name="sregsurvey"; version="0.1.3"; sha256="1wpqsjhj4vl8gzma4i9y75srzwl8zmkj55lmrhni7xar4d81mnb4"; depends=[caret dplyr gamlss gamlss_dist magrittr TeachingSampling]; }; srlTS = derive2 { name="srlTS"; version="0.1.1"; sha256="1alqywbp36adgnak1s78mcwfg0gcg90a9412nypylsk6bfa7wgsv"; depends=[dplyr ncvreg RcppRoll rlang yardstick]; }; srlars = derive2 { name="srlars"; version="1.0.1"; sha256="1l98d24r746h0yh1g885slaq292d3xiy355ihkwdrhvvmirs7l0f"; depends=[cellWise glmnet]; }; @@ -18648,6 +18939,7 @@ in with self; { ss3sim = derive2 { name="ss3sim"; version="1.0.3"; sha256="0s2yajlhi07fvqc0rr4msd9g2jrswb83dx55wsxnw925vikqa5kz"; depends=[bbmle foreach ggplot2 gtools r4ss]; }; ssMRCD = derive2 { name="ssMRCD"; version="0.1.0"; sha256="16s7jpm9yik1l5s682hdrmh22hrxk5qzy31ls54g48125j8v96la"; depends=[car dbscan dplyr ggplot2 plot3D robustbase scales]; }; ssMousetrack = derive2 { name="ssMousetrack"; version="1.1.6"; sha256="014b1ylynn3l3k24p4zr001ys32ajrxxdpk3jwl0lmfm7r63as58"; depends=[BH CircStats cowplot dtw ggplot2 Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; + ssMutPA = derive2 { name="ssMutPA"; version="0.1.0"; sha256="15nrv2yzs5ydzm7030cznyqxdisg68hld28z3060bvq4ad3a9wvq"; depends=[ggplot2 ggridges igraph kernlab maftools Matrix NbClust pheatmap RColorBrewer survival]; }; ssaBSS = derive2 { name="ssaBSS"; version="0.1.1"; sha256="1sfhrp5y4hhnc417jq2vyk935iyicl58jbw4nwrj3rayh0ng7dbp"; depends=[BSSprep ggplot2 ICtest JADE tsBSS xts zoo]; }; ssanv = derive2 { name="ssanv"; version="1.1"; sha256="17a4a5azxm5h2vxia16frcwdyd36phpfm7fi40q6mnnrwbpkzsjd"; depends=[]; }; ssc = derive2 { name="ssc"; version="2.1-0"; sha256="1lq71p8hbjfg4a52009810k5dmhak9ddk1dywvhy7v2gjmxqnadw"; depends=[proxy]; }; @@ -18670,12 +18962,13 @@ in with self; { ssmodels = derive2 { name="ssmodels"; version="1.0.1"; sha256="19w3vr4zz23xbb4mr4zwqwj024i10hgnpm0cf47qh5c1zkjcwdib"; depends=[miscTools numDeriv pracma Rdpack sn]; }; ssmrob = derive2 { name="ssmrob"; version="1.0"; sha256="1xzhk8ni6375p2nfnl39x51ny2wi53a09fkr95nrdbxhkcm5flvz"; depends=[MASS robustbase sampleSelection]; }; ssmsn = derive2 { name="ssmsn"; version="0.2.0"; sha256="0fzqdkqhj5hh8pzcwh7i0rglgdq22a5mriyis8r1vhlkdc7n5m39"; depends=[MCMCpack]; }; - sspse = derive2 { name="sspse"; version="1.1.0"; sha256="1akyzzf76gc8k18my1b4knwnam0dg3nakrq79n4240k8vwyix1vj"; depends=[coda KernSmooth RDS scam]; }; + sspse = derive2 { name="sspse"; version="1.1.0-1"; sha256="0dy78fkazjm6ai2smxfkkhfzgbqk4sxvq7yhj89zdnk1vp1p1fy7"; depends=[coda KernSmooth RDS scam]; }; ssr = derive2 { name="ssr"; version="0.1.1"; sha256="0l2f8lsmwv2f4y708g32jy2s4jj0j686830qp4a5ailyrdbbz1ix"; depends=[caret e1071]; }; ssrm_logmer = derive2 { name="ssrm.logmer"; version="0.1"; sha256="1i9rrsixl3swd04w1gf9gf1r2wb9nkvwhc8ld4bx4zxzm1031f67"; depends=[sfsmisc statmod]; }; ssrn = derive2 { name="ssrn"; version="0.1.0"; sha256="1s78wiyn6ff6f55cp5knhram6m61cbckdnzm9q6imrjwngjci6cx"; depends=[dplyr magrittr purrr rlang stringr tibble tidyr]; }; sss = derive2 { name="sss"; version="0.2.2"; sha256="1v2y3mykbh09573jdadl7rjdv1dy7f86pc98sdvkfz2g1ivwnnc3"; depends=[assertthat xml2]; }; sssc = derive2 { name="sssc"; version="1.0.0"; sha256="00m5zfd3jnbxa8x76v4pfyl4qdfq90n8rqx4hngany0ka1z5g7m6"; depends=[changepoint e1071 ggplot2 VGAM]; }; + sstvars = derive2 { name="sstvars"; version="1.0.1"; sha256="16ans039cx5kj0l1l8108jfplgz4mq5bbqhixks2dqmlsn5qn34m"; depends=[pbapply Rcpp RcppArmadillo]; }; ssym = derive2 { name="ssym"; version="1.5.8"; sha256="06qmzlsk232d3vwzb7hjrbrfw0jn6br55v1nldjij3nl75c52xw7"; depends=[Formula GIGrvg normalp numDeriv sandwich survival]; }; st = derive2 { name="st"; version="1.2.7"; sha256="0j29k9fg8659yw1jwmcakiic51rin1dj1fmvpapy2wmz4c3pr0fp"; depends=[corpcor fdrtool sda]; }; stR = derive2 { name="stR"; version="0.6"; sha256="1gh26yhcpkiif6zyrrg0rw4118xcf7j1d1wf70wgyrwb1hrr6vcv"; depends=[foreach forecast Matrix quantreg SparseM]; }; @@ -18693,6 +18986,7 @@ in with self; { stabm = derive2 { name="stabm"; version="1.2.2"; sha256="1vslidq2pzpwhsrsklghaqsdjjf4w4wqs2dng0p68zhrv5vlivhq"; depends=[checkmate Matrix]; }; stabreg = derive2 { name="stabreg"; version="0.1.2"; sha256="1jrxyv0d33vd9vdlj1cv1a2qdz8iqgr726f54dgazwsz3cpyy2ia"; depends=[numDeriv]; }; stabs = derive2 { name="stabs"; version="0.6-4"; sha256="1nf1yg14cgxrs4np1yghpzw1nczaslfv3rvf3918wrlzg0vp6l7q"; depends=[]; }; + stackgbm = derive2 { name="stackgbm"; version="0.1.0"; sha256="05fvp2d96n82dsldlip47lc146a094al6i7dyq5zg3ika14mq6hw"; depends=[pROC progress rlang]; }; stacking = derive2 { name="stacking"; version="0.1.2"; sha256="0kizp8ivkan5qjqvc19fg5f5n1k32z1nw81m41nrnblp5c9klvg7"; depends=[caret]; }; stacks = derive2 { name="stacks"; version="1.0.4"; sha256="1i28m6jxg83h3as74ax39frdwbzwnsq20vb18shswc62azrimw9q"; depends=[butcher cli doFuture dplyr foreach future generics ggplot2 glmnet glue parsnip purrr recipes rlang rsample tibble tidyr tune vctrs workflows]; }; stacomiR = derive2 { name="stacomiR"; version="0.6.1"; sha256="0ik0804j8fvqmpj0xyzmjdsykw3672a5vyb4dhiss7dc1g4la20f"; depends=[DBI dplyr ggplot2 Hmisc intervals lattice lubridate magrittr mgcv pool RColorBrewer reshape2 rlang RPostgres scales stacomirtools stringr withr xtable]; }; @@ -18701,7 +18995,7 @@ in with self; { stagedtrees = derive2 { name="stagedtrees"; version="2.3.0"; sha256="1xvik7wk8kccdrnzxxqw3vga4498bm2k50bz4hmfx4xrrq3bapwg"; depends=[cli matrixStats rlang]; }; staggered = derive2 { name="staggered"; version="1.1"; sha256="0z9358qbgn637j8iz5qwr4nyrlvi9w85l325vxpc61mcwksx5ip8"; depends=[coop dplyr magrittr MASS purrr Rcpp RcppEigen reshape2 tidyr]; }; stampr = derive2 { name="stampr"; version="0.3.1"; sha256="15jzf67db9yx4rw1c849v50fcjch8f37h37ly57nxp057zj2b1d2"; depends=[dplyr geosphere lwgeom rlang sf spdep]; }; - stan4bart = derive2 { name="stan4bart"; version="0.0-7"; sha256="08c6s9kg6pzsh411wnv3pg7717r6kyl1sbm3j4vl0b0sssv12z9s"; depends=[BH dbarts Matrix Rcpp RcppEigen RcppParallel]; }; + stan4bart = derive2 { name="stan4bart"; version="0.0-8"; sha256="1i0asl380p38ksi59wmyi23jwq05mm9kxymphyqjniq68i0lban4"; depends=[BH dbarts Matrix Rcpp RcppEigen RcppParallel]; }; standardize = derive2 { name="standardize"; version="0.2.2"; sha256="008nz9vf08qxwdsn373yzpmsw5lhbm6mpm6dlwyys58wq0bdvh28"; depends=[lme4 MASS stringr]; }; standardlastprofile = derive2 { name="standardlastprofile"; version="1.0.0"; sha256="0hj4hb2x7j1mfhkr6ccxjl4zkvhy3h0lvs71vzrz4mja3453bs5x"; depends=[]; }; standartox = derive2 { name="standartox"; version="0.0.2"; sha256="03g07yfw1l0j2xqjl74pvidlrrv2ia2kmhb94asj5d5xq7hr1004"; depends=[data_table fst httr jsonlite]; }; @@ -18713,10 +19007,10 @@ in with self; { starma = derive2 { name="starma"; version="1.3"; sha256="07r0kyabhgbm2v39fcrw0qhxcxj9a9cb45g9chzcnn9qmvramcwx"; depends=[ggplot2 Rcpp RcppArmadillo scales]; }; starnet = derive2 { name="starnet"; version="0.0.6"; sha256="0gbg8svyj4nh846q7986ap7jjry599kb1348k9lifz19kvyr4rn4"; depends=[cornet glmnet Matrix survival]; }; starry = derive2 { name="starry"; version="0.1.2"; sha256="18dn18y5vs4fhj3jzm2zmvyx2wqakkrkppmggizz60vrarnaqp8i"; depends=[bslib car corrr dplyr ggplot2 magrittr shiny shinyjs shinyWidgets stringr]; }; - stars = derive2 { name="stars"; version="0.6-4"; sha256="0mqd2dfa8jhxjmfphvv3rkw2lri5sz49042asj5lyln3wkylqjj2"; depends=[abind classInt rlang sf units]; }; + stars = derive2 { name="stars"; version="0.6-5"; sha256="1b5gs0qa8097f2mvz4rgl46wrvk1rbbbi2a4s901hdg4bkr15jsg"; depends=[abind classInt rlang sf units]; }; starsExtra = derive2 { name="starsExtra"; version="0.2.8"; sha256="0r3nqdgwx0nz1q9nm9nfc1awdbm3n52pqrc5hln6dw23wbpvzfd3"; depends=[mgcv nngeo sf stars units]; }; starsTileServer = derive2 { name="starsTileServer"; version="0.1.1"; sha256="04z3xaijhgn5g10vvx19lya6v17ypcq00w4jlgkap3fafw61pqhn"; depends=[assertthat leaflet plumber png R6 rlang sf stars units]; }; - starschemar = derive2 { name="starschemar"; version="1.2.4"; sha256="0q2d4a7frg7ffcsgs0sgkq7a3aazpbg3fbcxf0ygiwg4v4djir57"; depends=[dplyr generics purrr rlang snakecase tibble tidyr]; }; + starschemar = derive2 { name="starschemar"; version="1.2.5"; sha256="11wbsxn5rvppinhhs12vma5xjva1ii440mqvnl5vjj23p0ldynmb"; depends=[dplyr generics purrr rlang snakecase tibble tidyr]; }; startR = derive2 { name="startR"; version="2.3.1"; sha256="03wdaqiyrjhihsnw33z87baplv854znh4l7ww4ywmp17hl6hr7l8"; depends=[abind bigmemory ClimProjDiags easyNCDF future multiApply PCICt s2dv]; }; starter = derive2 { name="starter"; version="0.1.15"; sha256="0lzaiw4m6wxniv8bgri33z8np49mqbgip4jhibsw0xa717anlqa4"; depends=[cli dplyr gert glue R_utils renv rlang rprojroot rstudioapi]; }; startup = derive2 { name="startup"; version="0.21.0"; sha256="0iwq1nbiv2j78g17mq566qqv5p5msk1gmi0bb0hs1j1xx9vjamnl"; depends=[]; }; @@ -18725,8 +19019,8 @@ in with self; { starvz = derive2 { name="starvz"; version="0.8.0"; sha256="0slym8xwvihbslxm4llbzb8fybjbk040lbzng4fh5dsw58zf04r1"; depends=[BH data_tree dplyr ggplot2 gtools lpSolve magrittr patchwork purrr RColorBrewer Rcpp readr rlang stringr tibble tidyr yaml zoo]; }; starwarsdb = derive2 { name="starwarsdb"; version="0.1.2"; sha256="00n9qqw4lbfk698qgvw8i42sy3dv5i5fiiqma3zks4rr9yspkldq"; depends=[DBI duckdb magrittr tibble]; }; statBasics = derive2 { name="statBasics"; version="0.2.0"; sha256="1yphfzwj8hmqsz1qfckb05xxjyyi9r6g6iqcl8n20bs5hgr3d2s9"; depends=[stringr tibble]; }; - statConfR = derive2 { name="statConfR"; version="0.0.1"; sha256="149aj19kp52yrgzs6aca50m3lfxrbiiy1mljhr6bxspckilmi36x"; depends=[]; }; - statGraph = derive2 { name="statGraph"; version="0.5.1"; sha256="04m678ricwbrs64zrs36bzygkf5g6frsisyzyfxml9i40fzdv8pa"; depends=[cluster doParallel foreach igraph MASS rARPACK]; }; + statConfR = derive2 { name="statConfR"; version="0.1.1"; sha256="0yzg2259r8w8b1kkrrj6494p9iyj7mk0zvxbwmgi8hbclrfqyw2n"; depends=[plyr]; }; + statGraph = derive2 { name="statGraph"; version="1.0.1"; sha256="0jqb8bp0szzp67n52y0wsxpb0amb3sy00l25l933pxgfcj5hpdnz"; depends=[cluster doParallel foreach igraph MASS rARPACK]; }; statVisual = derive2 { name="statVisual"; version="1.2.1"; sha256="1cc9p9g8lzn0lgh793r977yhqbk89l74m443gnznjlfml69bfb21"; depends=[Biobase dplyr factoextra forestplot gbm GGally ggdendro ggfortify ggplot2 ggrepel glmnet gridExtra knitr limma magrittr pheatmap pROC pvca randomForest RColorBrewer reshape2 rmarkdown rpart_plot tibble tidyverse]; }; statar = derive2 { name="statar"; version="0.7.6"; sha256="0fjlmzndcm88dlqf6kmd1ssy0ll2g7vap6cai954lh37zbbbb674"; depends=[data_table dplyr ggplot2 lazyeval matrixStats rlang stringr tidyselect]; }; statcanR = derive2 { name="statcanR"; version="0.2.6"; sha256="1hnf3zjlpfp86lii9sz8m2dvzbj9bs320ffdr81q2jsla71xybaa"; depends=[curl data_table dplyr DT ggplot2 httr qpdf qs readr reshape2 tibble]; }; @@ -18737,12 +19031,12 @@ in with self; { states = derive2 { name="states"; version="0.3.2"; sha256="1ffaj7rzqnwzki4hr5f90hz3racaigmk8qbzanxbbbfsy881avmr"; depends=[dplyr lifecycle rlang]; }; statespacer = derive2 { name="statespacer"; version="0.5.0"; sha256="18bir894yrbff5h5pbqr342xckb78zzb24x2yrv9ffhrl5dvyk5d"; depends=[Rcpp RcppArmadillo Rdpack]; }; statgenGWAS = derive2 { name="statgenGWAS"; version="1.0.9"; sha256="0isjzb83vwml654b1azgvnwiijpihdk24b3jamls976is359qvrv"; depends=[data_table ggplot2 Rcpp RcppArmadillo sommer]; }; - statgenGxE = derive2 { name="statgenGxE"; version="1.0.7"; sha256="1jvlc2c6s07ivb89lsdahp3k5g0fn1cv1bkhm6fp6m21qzsrakag"; depends=[emmeans ggplot2 gridExtra knitr lme4 rlang statgenSTA xtable]; }; + statgenGxE = derive2 { name="statgenGxE"; version="1.0.8"; sha256="16ngsxg3vhbg1kg0zs6ddfbcfgkz40ybxll2jfyc1n4l4ip9j52q"; depends=[emmeans ggplot2 gridExtra knitr lme4 rlang statgenSTA xtable]; }; statgenHTP = derive2 { name="statgenHTP"; version="1.0.6.1"; sha256="1lhs72y9p98vas7iv1zgqb9zac6plzgv5lffccyg75r88784xn1s"; depends=[animation factoextra ggforce ggnewscale ggplot2 gridExtra LMMsolver locfit lubridate Matrix reshape2 rlang scales spam SpATS]; }; statgenIBD = derive2 { name="statgenIBD"; version="1.0.7"; sha256="1dw0riwycd59hcidnxczy61xib8if8m2hv6dni2qd6n2i99vfbpc"; depends=[data_table ggplot2 Matrix Rcpp RcppArmadillo rlang statgenGWAS stringi]; }; statgenMPP = derive2 { name="statgenMPP"; version="1.0.2"; sha256="1qpf9gic9671hr6zyj56sqwx9wl51qr6gj84rfssdla718h766im"; depends=[data_table foreach ggplot2 gridExtra LMMsolver Matrix scales spam statgenGWAS statgenIBD stringi]; }; statgenQTLxT = derive2 { name="statgenQTLxT"; version="1.0.2"; sha256="1lq8v49zf9l6gaifdwc0qpx8kknnhqw2jg19v2vr7da1xqd7wfdi"; depends=[data_table foreach Rcpp RcppArmadillo sommer statgenGWAS]; }; - statgenSTA = derive2 { name="statgenSTA"; version="1.0.12"; sha256="17svv7193wlmgsslcghr2gpbzhn8v1c5pwmk1ksh7l5imn792z21"; depends=[emmeans ggplot2 ggrepel gridExtra knitr lme4 mapproj maps qtl rlang scales SpATS xtable]; }; + statgenSTA = derive2 { name="statgenSTA"; version="1.0.13"; sha256="1pnb13psnyqj4mjry6g78pjc4qz642wjnxi9ki8i4h73i335ixxv"; depends=[emmeans ggplot2 ggrepel gridExtra knitr lme4 mapproj maps qtl rlang scales SpATS xtable]; }; stationaRy = derive2 { name="stationaRy"; version="0.5.1"; sha256="1620fdlybn3hr96yngnp802imr9b7n90835lyyd86r2wn6psdzvl"; depends=[downloader dplyr lubridate lutz magrittr progress readr stringr tidyr]; }; stationery = derive2 { name="stationery"; version="1.1"; sha256="1n5mzk6ibb8j4vy2ca3bj0jm2bk2qg5x6nsch2hwcyspm3gym4jl"; depends=[knitr kutils rmarkdown]; }; statip = derive2 { name="statip"; version="0.2.3"; sha256="0kymc3ds1nx0h11ffmm3vmqr1w34gd0k788vf72x2v45h8c1ma2n"; depends=[clue rpart]; }; @@ -18751,7 +19045,7 @@ in with self; { statnet = derive2 { name="statnet"; version="2019.6"; sha256="17dj6vjnjyqrfhzjq1lys5b29j942kd15zffb69jidni3slf20q9"; depends=[ergm ergm_count network networkDynamic sna statnet_common tergm tsna]; }; statnet_common = derive2 { name="statnet.common"; version="4.9.0"; sha256="1mrdzhxxrr6a0hwxczs40f8ppkdimlki1gbg6f3kv69s6rpdr1d4"; depends=[coda]; }; statnetWeb = derive2 { name="statnetWeb"; version="0.5.6"; sha256="1haf2kr1mwvaz4hlwla2ysbcy3sbfcg3i4hyiy9y6lcffvy4w9w0"; depends=[ergm lattice latticeExtra network RColorBrewer shiny sna]; }; - statnipokladna = derive2 { name="statnipokladna"; version="0.7.2"; sha256="1n7gvr57c27ilxrnpmr0bz6hc0d39lp6rnn4dkqdwdapzyhfymq4"; depends=[cli curl dplyr httr jsonlite lifecycle lubridate magrittr purrr readr rlang stringi stringr tibble tidyr xml2]; }; + statnipokladna = derive2 { name="statnipokladna"; version="0.7.3"; sha256="0zym16mmimyfkz4f9h5xm9ispqnr7pbfxragv71d6kl3iz2185hp"; depends=[cli curl dplyr httr jsonlite lifecycle lubridate magrittr purrr readr rlang stringi stringr tibble tidyr xml2]; }; statprograms = derive2 { name="statprograms"; version="0.2.0"; sha256="0m7px7fmpz2zzlfdi7rbllcjvcjp8iy94f6fa1w4xinh7vz3y6vq"; depends=[]; }; statpsych = derive2 { name="statpsych"; version="1.5.0"; sha256="0sgdz97svj2krg6576pc74jiqpws4qjvvk351d88av3cc9s3g9y8"; depends=[mathjaxr mnonr Rdpack]; }; statquotes = derive2 { name="statquotes"; version="0.3.2"; sha256="0y805alr98zz306jjnikggdd02c3yrp5izzwhh457bsb85i22yri"; depends=[stringr tidytext wordcloud]; }; @@ -18761,8 +19055,10 @@ in with self; { statsearchanalyticsr = derive2 { name="statsearchanalyticsr"; version="0.1.4"; sha256="0m2zv5sgv7w9yk6q7rwx8x2zy6xx5w0d6c9vynddr08pn4mdqjhs"; depends=[glue httr jsonlite lubridate purrr stringr tibble tidyr]; }; statsr = derive2 { name="statsr"; version="0.3.0"; sha256="138yjifz8q3dqcm3wbzn4sxdydwnqvwkz0h20r8ls3pijqh6fc2y"; depends=[BayesFactor broom cubature dplyr ggplot2 gridExtra knitr rmarkdown shiny tibble tidyr]; }; statswalesr = derive2 { name="statswalesr"; version="0.2.0"; sha256="03h0gq8ag51my5z8mw78rhbkksfpa7af8my6lb468wrcfv69k0gl"; depends=[curl dplyr httr jsonlite rlang]; }; + stbl = derive2 { name="stbl"; version="0.1.1"; sha256="0hlc73i0qkxixw8z27sc0fj0i613x248i4bwk2zdrsby4zfhbxvq"; depends=[cli glue rlang vctrs]; }; stcos = derive2 { name="stcos"; version="0.3.1"; sha256="146s0jdd88pax9xsn2z56x8sfkjx8yr8sf59ma9zryq42ajyq43d"; depends=[dplyr Matrix Rcpp RcppArmadillo sf]; }; stcov = derive2 { name="stcov"; version="0.1.0"; sha256="166w929sgd7nanw1zjhzwv50hd5vqhgsrgxnsga4dzrcvndalw70"; depends=[]; }; + stcpR6 = derive2 { name="stcpR6"; version="0.9.6"; sha256="1336fdr5gy84j9mj15r4kgc88p53x4alk8z5gd3j4b7f1fd9skpa"; depends=[R6 Rcpp]; }; stdReg = derive2 { name="stdReg"; version="3.4.1"; sha256="0x4awgbja70mdpbavgkg9mpnrxxc0qpsnl8i3rj9hs4vwbdkalr8"; depends=[data_table drgee numDeriv survival]; }; stddiff = derive2 { name="stddiff"; version="3.1"; sha256="1lirfxqiq59vhjkq1zv27ycybbs9n62c14klkkcf74j15a54cmbn"; depends=[]; }; stdmod = derive2 { name="stdmod"; version="0.2.10"; sha256="1rjky1llvj1w883xj2dicdqw9qz06az5aqj0ls9lhdnz9ipqp6i6"; depends=[boot ggplot2 lavaan manymome rlang]; }; @@ -18782,10 +19078,10 @@ in with self; { stepgbm = derive2 { name="stepgbm"; version="1.0.1"; sha256="1wcc4m9alphacdf9df5z29hz881625czxpyq93kzwc0nhnvz2gp0"; depends=[spm steprf]; }; stepjglm = derive2 { name="stepjglm"; version="0.0.1"; sha256="0xsb0wg7ka4ska2jkzaic7kqdzj2fkhpf5sxr3a116f2najj9ax2"; depends=[rsq]; }; stepmixr = derive2 { name="stepmixr"; version="0.1.2"; sha256="0yh0dbv14bdzwlz3fwl5ibmmg2nzb6prfdwribavfndx8zxbwgn7"; depends=[reticulate]; }; - stepp = derive2 { name="stepp"; version="3.2.6"; sha256="0b2jq9fdnakqrwcss4cw8nd5zq122w2ba607z71fmp1gx8rw4sf7"; depends=[car rstudioapi scales survival]; }; + stepp = derive2 { name="stepp"; version="3.2.7"; sha256="0kdjp3kxvyjy8fyrzisiv9fjx53dpsg69ksd08lnngvzw31rv5yy"; depends=[car rstudioapi scales survival]; }; steprf = derive2 { name="steprf"; version="1.0.2"; sha256="1wscxnglxi61agmfn1zmhh75c7h5394r8d8khr02p22a234npqqi"; depends=[psy randomForest spm spm2]; }; steps = derive2 { name="steps"; version="1.3.0"; sha256="0yvqz5jhzwqkm3gphb2mmlq1ip6sr8g6c09hirs827j12dj63ixf"; depends=[future future_apply memuse raster rasterVis Rcpp viridisLite]; }; - stevedata = derive2 { name="stevedata"; version="1.1.0"; sha256="0pb5w0jzyf4igi76n9cr97zxk5l8m7mjjjn18bd71w3mbpnsig7r"; depends=[]; }; + stevedata = derive2 { name="stevedata"; version="1.3.0"; sha256="0ggfgf3g240r69g4wnhyxvzp46by9b79hzhhpbs1rmh2pzd6zj96"; depends=[]; }; stevedore = derive2 { name="stevedore"; version="0.9.6"; sha256="0mx4l7yiicvpri5qdw9czlvr27a9753a6z98s8k19lbz58nim1wr"; depends=[crayon curl jsonlite yaml]; }; stevemisc = derive2 { name="stevemisc"; version="1.7.0"; sha256="1xngshwsqd3z0zygrzxwnmr3jwha2kbw7fcf0vc0yngqg62gzrvn"; depends=[arm dplyr forcats ggplot2 httr labelled lme4 magrittr purrr rlang rmarkdown stringr tibble tidyr]; }; stevetemplates = derive2 { name="stevetemplates"; version="1.0.0"; sha256="1q9wj132y5ms7wdsxv90c6hawni5b2vynsxnym3rzr5wmif5a7v0"; depends=[rmarkdown]; }; @@ -18800,18 +19096,16 @@ in with self; { stlARIMA = derive2 { name="stlARIMA"; version="0.1.0"; sha256="1bh88dd9md8w8qhmha02v2b7cz0pfk6yrc5bhxj8xv9cwanl7g6r"; depends=[forecast]; }; stlELM = derive2 { name="stlELM"; version="0.1.1"; sha256="1q3lcfqq06jfky388v7iilnnqbr5f4gq451xkc2kl04yl0dwcv2h"; depends=[forecast nnfor]; }; stlTDNN = derive2 { name="stlTDNN"; version="0.1.0"; sha256="1j2f9kxlry15xp7bc03h5jr7v8gzq8frdxyzhq9s78m3d3dbixf4"; depends=[forecast nnfor]; }; - stlnpp = derive2 { name="stlnpp"; version="0.3.10"; sha256="1xhg3ksgdaazlp2k4ff9af6lv64acrskjbqn5z42qj0fvz91qr5a"; depends=[spatstat spatstat_explore spatstat_geom spatstat_linnet spatstat_random]; }; + stlnpp = derive2 { name="stlnpp"; version="0.4.0"; sha256="1r80qzrvz5nmspark5xk59wi3r1kxjhrqpscwqrab9lnl7cal76s"; depends=[spatstat spatstat_explore spatstat_geom spatstat_linnet spatstat_random spatstat_univar]; }; stlplus = derive2 { name="stlplus"; version="0.5.1"; sha256="14728xsm982z9sg4rbqg307pbwqlsiyzj8z3sr9wr6fi0dayf6z5"; depends=[lattice Rcpp yaImpute]; }; stm = derive2 { name="stm"; version="1.3.7"; sha256="0cvv6q5r55iqk327rav25dymvnn77rj8chmgkbkwd0c1dpqf4x5q"; depends=[data_table glmnet lda Matrix matrixStats quadprog quanteda Rcpp RcppArmadillo slam stringr]; }; stmCorrViz = derive2 { name="stmCorrViz"; version="1.3"; sha256="1a4pckrbzsihyf1bqvw3cl0hxrc4yq1pnkgxgf4b8jday6zkxwcv"; depends=[jsonlite SnowballC stm tm]; }; stmgp = derive2 { name="stmgp"; version="1.0.4"; sha256="1yf0hr5gaql424ikjm9ra50vz4ppfsshhf89xphl7c9v9a6bjvw0"; depends=[MASS]; }; stmgui = derive2 { name="stmgui"; version="0.1.6"; sha256="1fn2m5l7y3p1riw39g6r3hpjxdccygih7yipp7dvc4msl9fm4h5c"; depends=[markdown shiny shinyBS shinyjs shinythemes stm tm]; }; - stminsights = derive2 { name="stminsights"; version="0.4.2"; sha256="1a0wglrsl5sr7fc6vhiwva0lmr0ac3ns4rfis2y8ib2vxxwhwb8j"; depends=[dplyr ggplot2 ggraph ggrepel huge igraph purrr readr scales shiny shinyBS shinydashboard shinyjs stm stringr tibble tidygraph]; }; stoRy = derive2 { name="stoRy"; version="0.2.2"; sha256="05lji6gl8nzkxhygfvfm7alk5yp5gw1dkkr5r993vnj67m10pcbq"; depends=[cli crayon dplyr fansi httr lifecycle purrr R6 rappdirs readr rlang stringr tibble tidyjson tidyr]; }; stocc = derive2 { name="stocc"; version="1.31"; sha256="0d0n9nrcva0vradippq30y6dc6klwd1mllnzpnzq9rczpz5cw7mw"; depends=[coda fields Matrix rARPACK truncnorm]; }; stochLAB = derive2 { name="stochLAB"; version="1.1.2"; sha256="1gixw8rjhivcz71ypmbn0cs27gi5bsmmm37nsx0psas7nvw8zwxi"; depends=[cli dplyr glue logr magrittr msm pracma purrr rlang tibble tidyr]; }; stochQN = derive2 { name="stochQN"; version="0.1.2-1"; sha256="1lfzivl745dj94kap103arz0zy75wk69kc6v84xaaxk7ad3icnaj"; depends=[]; }; - stochprofML = derive2 { name="stochprofML"; version="2.0.3"; sha256="0j6m2byh7w9kcbp3mfvmg6fm6z0dq8k4qabj1yfkl0d1y2ifd1zd"; depends=[MASS numDeriv]; }; stochvol = derive2 { name="stochvol"; version="3.2.4"; sha256="1cr8rn4nzdbvgjhsahyijn2kgbndiyvycbn6rjxc0x5prc99j52w"; depends=[coda Rcpp RcppArmadillo]; }; stochvolTMB = derive2 { name="stochvolTMB"; version="0.2.0"; sha256="07m3qz8j1sw37lrxzmbkbifd3nsdvd2blbca8vr1aq5bbafr1g1b"; depends=[data_table ggplot2 MASS RcppEigen sn TMB]; }; stockAnalyst = derive2 { name="stockAnalyst"; version="1.0.1"; sha256="1pqghpyvwylc00hcnqgcr03js3dz6id012ixn5gj3d3wqyh008bl"; depends=[]; }; @@ -18819,9 +19113,9 @@ in with self; { stocks = derive2 { name="stocks"; version="1.1.4"; sha256="0b6rl7pfkgzbpwnv7zzkr36hs5f1zb60d16ijslf7g9m25vvcyg6"; depends=[dvmisc Hmisc lubridate quantmod rbenchmark RColorBrewer Rcpp TTR zoo]; }; stodom = derive2 { name="stodom"; version="0.0.1"; sha256="065m94xp0qsh00f451a90g6dn8p9iksjqj5w7dzyjcbqxvmbadww"; depends=[dplyr ggplot2 pracma tibble tidyr]; }; stoichcalc = derive2 { name="stoichcalc"; version="1.1-5"; sha256="077mp485i844cdmjxy0spvh1scgakrwlf16qd0k5fn3h9lkgyg1c"; depends=[]; }; - stokes = derive2 { name="stokes"; version="1.2-0"; sha256="0jxjpbscs28v675fkclrxwh0ndqbnsb6lylszdir8ivmgr4vcjam"; depends=[disordR mathjaxr partitions permutations spray]; }; + stokes = derive2 { name="stokes"; version="1.2-1"; sha256="02pia2szr5mbl3cyr6agiydq5py0sjariws3mhaqmcni8infapvh"; depends=[disordR partitions permutations spray]; }; stopdetection = derive2 { name="stopdetection"; version="0.1.2"; sha256="0hgz18fiqp6ykv9h711fbjx234cjiwa6gifdgg460b0pib8hc66i"; depends=[data_table geodist lubridate]; }; - stopp = derive2 { name="stopp"; version="0.2.0"; sha256="0dxbq4g6zc26pp31hyq09gljlkn6lk8g7w0l5vir04k9xg9xd8ap"; depends=[fields KernSmooth MASS mgcv optimx plot3D sparr spatstat_explore spatstat_geom spatstat_linnet spatstat_model spatstat_random spatstat_utils splancs stlnpp stpp]; }; + stopp = derive2 { name="stopp"; version="0.2.4"; sha256="09cvh2h8c91zb8iak7g4j0sznv8kxbn0r2xjl36p663mqk2lb5ss"; depends=[fields KernSmooth MASS mgcv optimx plot3D sparr spatstat_explore spatstat_geom spatstat_linnet spatstat_model spatstat_random spatstat_univar spatstat_utils splancs stlnpp stpp]; }; stoppingrule = derive2 { name="stoppingrule"; version="0.4.0"; sha256="07gchj75hj1sjgp6nx1hry563vcd33q1j0iw1w1z9qaf3ivqby5a"; depends=[matrixStats pracma]; }; stops = derive2 { name="stops"; version="1.0-1"; sha256="12zc338wh78an1nsmqr7sbfcr96yrb6xqzg9miwlb58sv28hm8i3"; depends=[acepack clue cmaes cordillera dfoptim DiceKriging DiceOptim energy MASS minerva nloptr pomp pso rgl scagnostics scatterplot3d smacof tgp vegan]; }; stopwords = derive2 { name="stopwords"; version="2.3"; sha256="1ci1cgxrcvlhhplximsfv0plvjdbcd5kv0nphxnpildsn5m1rv65"; depends=[ISOcodes]; }; @@ -18829,7 +19123,7 @@ in with self; { stortingscrape = derive2 { name="stortingscrape"; version="0.3.0"; sha256="0a3i9dfd1mp1xmwcslvrlphf0j0z1b45hpaz9ady73kr7d5zs2j8"; depends=[httr2 rvest stringr]; }; storywranglr = derive2 { name="storywranglr"; version="0.2.0"; sha256="07w3dwv2naqbbdzjcv58cisj7cv1rbhrk96a30q8ww11rf953rj4"; depends=[dplyr httr jsonlite tibble urltools]; }; stosim = derive2 { name="stosim"; version="0.0.15"; sha256="09fxi9wv47fvc59jnr9y6kmc2gzvxs28hwf15h3f62vvh3v9ksn6"; depends=[Rcpp]; }; - stplanr = derive2 { name="stplanr"; version="1.1.2"; sha256="0n32d8916qkavaqr4016gnggyqrh75lndlvayl8qxq88lmjps2bf"; depends=[curl data_table dplyr httr jsonlite lwgeom magrittr nabor od pbapply Rcpp rlang sf sfheaders]; }; + stplanr = derive2 { name="stplanr"; version="1.2.1"; sha256="08hhx6lagfwy153xwbpqbvsz13dfq29607bp2640c5bfmddgnaxp"; depends=[curl data_table dplyr geosphere httr jsonlite lwgeom magrittr nabor od pbapply Rcpp rlang sf sfheaders]; }; stpm = derive2 { name="stpm"; version="1.7.12"; sha256="16kp69356bj1s26iwwysxdyr87kd3jqhj2gmmz4vc003ai63ga6y"; depends=[MASS nloptr Rcpp RcppArmadillo sas7bdat survival]; }; stpp = derive2 { name="stpp"; version="2.0-7"; sha256="1w9jn71ha817gldfhkmr2vfx3nkr78g1y662rfxg6flx2wyxs3kq"; depends=[ggplot2 gridExtra KernSmooth plot3D rgl rpanel spatstat_explore spatstat_geom spatstat_random splancs]; }; stppSim = derive2 { name="stppSim"; version="1.3.2"; sha256="00wxbahfamxf4y2fmscq48n5j81qx4xsnh8har2mhhnqvaiikbvz"; depends=[chron cowplot data_table dplyr future_apply geosphere ggplot2 gstat ks leaflet lubridate magrittr otuSummary progressr raster sf SiMRiv sp sparr spatstat_geom splancs stringr terra tibble tidyr]; }; @@ -18837,7 +19131,7 @@ in with self; { str2str = derive2 { name="str2str"; version="1.0.0"; sha256="1hzi8ns2v9y0mzv59aafh5gq4vyza2qbsmaxpj945nmfi4x3qqwi"; depends=[abind checkmate plyr reshape]; }; strand = derive2 { name="strand"; version="0.2.0"; sha256="0gd9nnbdilvk4bszg77bxilan6qpg1np7c38w1b7j5sr3r30y5in"; depends=[arrow dplyr ggplot2 lubridate Matrix R6 Rglpk rlang tibble tidyr yaml]; }; stranslate = derive2 { name="stranslate"; version="0.1.3"; sha256="10a2xrpg1vw9mci9w9hwcjnic942s3j5658wd5nw14ndxm1xhv79"; depends=[crayon knitr stringr]; }; - strap = derive2 { name="strap"; version="1.6-0"; sha256="1c4p9gjjjjc7zjml7r7qhb040va8s4x16jqia3j1j5h56d6wlh7m"; depends=[ape geoscale pbapply]; }; + strap = derive2 { name="strap"; version="1.6-1"; sha256="12cxdm3mmyw1bqyic03axckzy7la10m05a0bi5nsc1fvs1p1w268"; depends=[ape geoscale pbapply]; }; strat = derive2 { name="strat"; version="0.1"; sha256="1axxrp750kjzcgxjdqfscjmryv1mkv4l23zk8k23z8l4ymhd2f5w"; depends=[Hmisc Rcpp RcppArmadillo]; }; stratEst = derive2 { name="stratEst"; version="1.1.6"; sha256="0m41866xr21h4mih4z98y6pcrp2ws0mxxx157vdhbv7rhlh5djvp"; depends=[Rcpp RcppArmadillo]; }; strata_MaxCombo = derive2 { name="strata.MaxCombo"; version="0.0.1"; sha256="1iafnxa0z0rsal3v1y1l9ddzdgi594abhc4jkrsqp33316cmm2az"; depends=[mvtnorm]; }; @@ -18852,27 +19146,28 @@ in with self; { straweib = derive2 { name="straweib"; version="1.1"; sha256="0hi59p580yg6rj72grq4jx6grv7lmpi2cimp0rbxhkjpj6i1hav9"; depends=[]; }; strawr = derive2 { name="strawr"; version="0.0.91"; sha256="1nbcn20g3f3f5x9sscj3020n5h4iaphr70s90n2fz31vc4snzq2m"; depends=[Rcpp]; }; stray = derive2 { name="stray"; version="0.1.1"; sha256="1pjw1bdkqsp085lrwca1psma95ncapfz8a5iampxgghydkhh3dm8"; depends=[colorspace FNN ggplot2 ks pcaPP]; }; - stream = derive2 { name="stream"; version="2.0-1"; sha256="1mz1gdqfb92qy09w0jkm5j58bz0sqvnagd4lfb4s40412n77khgh"; depends=[BH clue cluster clusterGeneration dbscan fpc magrittr MASS mlbench proxy Rcpp rpart]; }; + stream = derive2 { name="stream"; version="2.0-2"; sha256="0qpn6rf0rp1nklarw0jkdlvpalcnvvjs26h8slnqkgrkb1rr0vhc"; depends=[BH clue cluster clusterGeneration dbscan fpc magrittr MASS mlbench proxy Rcpp rpart]; }; + streamConnect = derive2 { name="streamConnect"; version="0.0-4"; sha256="0sg28i9p6frlccabq9cq2j4w47jgcknwpjhpwl32qrwll7q9k4r3"; depends=[callr httr jsonlite plumber readr stream stringr]; }; streamDAG = derive2 { name="streamDAG"; version="1.5"; sha256="1zzpjp1k0x0kh4jja8x0yjv35pygp5qb8ivqqg7wc7dr5plv87y5"; depends=[asbio igraph plotrix]; }; streamDepletr = derive2 { name="streamDepletr"; version="0.2.0"; sha256="0pa0hsnhscsa98xkqzg7l83yagzq1r6m250m3m4r79baab8ndqp4"; depends=[dplyr Rmpfr sf]; }; - streamMOA = derive2 { name="streamMOA"; version="1.3-0"; sha256="0mdkwbph225xsjwnihmzj2gn56n7w6ffd1h432kjlj3b2lwdsyyn"; depends=[rJava stream]; }; + streamMOA = derive2 { name="streamMOA"; version="1.3-1"; sha256="12fa19z31a9046xn6v5w0kj4pmprdfmzakiwikg3y0k31fpjhqk6"; depends=[proxy rJava stream]; }; streamR = derive2 { name="streamR"; version="0.4.5"; sha256="1clx3b0j2515r1nmnl6ki7qw5n54q3x2jvqv3zrc00kq71mlj7ix"; depends=[ndjson RCurl rjson]; }; streambugs = derive2 { name="streambugs"; version="1.4"; sha256="0j7fi5rvs2apkzgyk9idpdcbxaa7kqj650gycfsq2md23fl75jpw"; depends=[deSolve]; }; + streetscape = derive2 { name="streetscape"; version="1.0.2"; sha256="0y06719766yh6ifbk1h7wgdsw3asnwagli50czwqyilcp8p0fc4z"; depends=[dplyr httr mapview OpenImageR osmdata parallelly pbmcapply quickPWCR reticulate rlang sf sp SuperpixelImageSegmentation]; }; stressaddition = derive2 { name="stressaddition"; version="3.1.0"; sha256="14ggy4ka9kll723jdir22g5l5xkwdckvd08gg6rxsmxryhznqd4a"; depends=[drc plotrix]; }; - stressor = derive2 { name="stressor"; version="0.1.0"; sha256="0dr6i9p7zv8lz4l4c7l71c5l9kfabjlymalaa24dkkvqlzzrwvyx"; depends=[dplyr reticulate]; }; + stressor = derive2 { name="stressor"; version="0.2.0"; sha256="1bm7f5mz529c0r1qq33z7di0d1c77yhpnrnmywlkx9ccvq7dicyc"; depends=[dplyr reticulate]; }; stressr = derive2 { name="stressr"; version="1.0.0"; sha256="00b93gfh1jd5r7i3dhsfqjidrczf693kyqlsa1krdndg8f0jkyj7"; depends=[lattice latticeExtra XML xts]; }; strex = derive2 { name="strex"; version="2.0.0"; sha256="1cxkpqwnpsqkg0i6n6bkkgbf3jkbgff5s8db95rz57lki8xwlqp9"; depends=[checkmate lifecycle magrittr rlang stringi stringr]; }; strider = derive2 { name="strider"; version="1.3"; sha256="114j0qpdyg8rrhj68zq596pgc4h7ja39n0rfxf0x9qg7imhaj1h6"; depends=[BH Rcpp]; }; - string2path = derive2 { name="string2path"; version="0.1.6"; sha256="1pv031684l198a96glgx65pp1ri9wvixk9zqmxbqdfb6d86ls9rp"; depends=[cli tibble]; }; - stringb = derive2 { name="stringb"; version="0.1.17"; sha256="0bfwwbg64nzxrx30cndqvdlhanjkx6875lg5dzm9cbwvwg2wbxcn"; depends=[backports]; }; + string2path = derive2 { name="string2path"; version="0.1.7"; sha256="00gzfibv3pw35r9lqzxpik1x3daffrs5xlbbxm46d9gvd2bhrzxd"; depends=[cli tibble]; }; stringdist = derive2 { name="stringdist"; version="0.9.12"; sha256="1i365vwjx8kk47wzry8d3zhzrlv51hn76s2ipk9vi121zx939171"; depends=[]; }; stringfish = derive2 { name="stringfish"; version="0.16.0"; sha256="14vrg6mkwwgw1klgpvjn7936yfxav55rainz71xjjih2j21vq21n"; depends=[Rcpp RcppParallel]; }; stringformattr = derive2 { name="stringformattr"; version="0.1.2"; sha256="0x56k30clj5ajk0qg5sr8b9l0asz6ldivwr1ddy1vp1djliih1fx"; depends=[stringr]; }; - stringi = derive2 { name="stringi"; version="1.8.3"; sha256="09a964g8q3iphq24ln9c9g5158ynr75pfh3ghddarn0xvn7bw0hn"; depends=[]; }; - stringmagic = derive2 { name="stringmagic"; version="1.1.0"; sha256="1iwsfzpmcsbhqdxidcypqk7098sld7k0di3h7mrwqjs4c465g8r7"; depends=[Rcpp]; }; + stringi = derive2 { name="stringi"; version="1.8.4"; sha256="1wv9qqxl84l44kpvkx0lmyciinrh9pa5512jm56gsaqs9pvgh6f2"; depends=[]; }; + stringmagic = derive2 { name="stringmagic"; version="1.1.2"; sha256="134g9c358d3730fvkhcwcrhy4w7ig614jcnxrygakrcvm55c1lgf"; depends=[Rcpp]; }; stringr = derive2 { name="stringr"; version="1.5.1"; sha256="1pj5xwg8kq2jllmszgkw96qj37wlb0x0vx4f3m5j211zpd8yrbd4"; depends=[cli glue lifecycle magrittr rlang stringi vctrs]; }; stringstatic = derive2 { name="stringstatic"; version="0.1.2"; sha256="0kj85yas07l9xl49l2j0bk42ymdg57fmgyk45wwl0kmxp146skfq"; depends=[]; }; - stringx = derive2 { name="stringx"; version="0.2.6"; sha256="0n11y2w9gm37kfkg44df95ib1xbjglz7ys9ffw05pbc71ai0njjp"; depends=[stringi]; }; + stringx = derive2 { name="stringx"; version="0.2.8"; sha256="0rcbbc1x07am5ag5fnirvyg7r640pp9cs2vqzs9jlx8xx385p4md"; depends=[stringi]; }; strip = derive2 { name="strip"; version="1.0.0"; sha256="1j3kq6w8k66z45rpd1cgxplpnldzbyqklgs4bnbv906pyd8wk9ak"; depends=[rlist]; }; stripless = derive2 { name="stripless"; version="1.0-3"; sha256="08mdp7kq6r5bk77j09477d1dnn7iwa346pr24b5bqsxwnbknyrsr"; depends=[lattice]; }; striprtf = derive2 { name="striprtf"; version="0.6.0"; sha256="1c8z2qf1kp43ir4dmyxq6hc46dclq8vx3ggkj02p8j1icjswm9bh"; depends=[magrittr Rcpp stringr]; }; @@ -18884,9 +19179,9 @@ in with self; { studentlife = derive2 { name="studentlife"; version="1.1.0"; sha256="1xvlcwg7ckxsm5hb5ax8r3hzdqnx61ax59ini5xc5jrsmir13g67"; depends=[crayon dplyr ggplot2 jsonlite purrr R_utils readr skimr tibble tidyr visdat]; }; studyStrap = derive2 { name="studyStrap"; version="1.0.0"; sha256="0lvzqnq40j0xn74qrj0pqhr8zz34mbhfd7dg8bnadscsvj5ffm4c"; depends=[caret CCA dplyr MatrixCorrelation nnls pls tibble tidyverse]; }; stxplore = derive2 { name="stxplore"; version="0.1.0"; sha256="1bnpp53s7r8ghvbxvnlk103h66a55xf7y9fcdhvmfgf31d2x5dsd"; depends=[fields ggmap ggplot2 ggridges gridExtra gstat lubridate magrittr RColorBrewer rlang sp spacetime stars tidyr]; }; - styler = derive2 { name="styler"; version="1.10.2"; sha256="043v9xwm72jqrrzzmjgrkf34lncjnn69650ks72z7rjb1wqmbh56"; depends=[cli magrittr purrr R_cache rlang rprojroot vctrs withr]; }; + styler = derive2 { name="styler"; version="1.10.3"; sha256="0hfspw1q40jqla238dw86iyf0lyk1agc19flwvf9nrm824hw5fdd"; depends=[cli magrittr purrr R_cache rlang rprojroot vctrs withr]; }; stylest2 = derive2 { name="stylest2"; version="0.1"; sha256="1r8vasbhynw7bv94j2wrh7l37552x77m1p7jaig1cr6s4r53flvg"; depends=[Matrix quanteda]; }; - stylo = derive2 { name="stylo"; version="0.7.4"; sha256="0vjfpz4bpdrsax7a0gsj9cwddbsayb4n5fr5xskz63lfrjg2ppcb"; depends=[ape class e1071 lattice pamr tcltk2 tsne]; }; + stylo = derive2 { name="stylo"; version="0.7.5"; sha256="00iw5yr6qnf01hd0a9dsqwjv2cdhq82pfj5wiy1fz0jg0q1ghh9n"; depends=[ape class e1071 lattice pamr tcltk2 tsne]; }; suRtex = derive2 { name="suRtex"; version="0.9"; sha256="0xcy3x1079v10bn3n3y6lxignb9n3h57w4hhrvzi5y14x05jjyda"; depends=[]; }; subcopem2D = derive2 { name="subcopem2D"; version="1.3"; sha256="06wwd847g9pxd0z2a8494h3nc9s280a3s1510bir24m3z7w1pqf3"; depends=[]; }; subdetect = derive2 { name="subdetect"; version="1.2"; sha256="0p9153dhxf9k5qs554vdcgpdsqas41ylc5qb2i2j76z8nvi0v9hm"; depends=[]; }; @@ -18896,7 +19191,6 @@ in with self; { submax = derive2 { name="submax"; version="1.1.1"; sha256="0b9x55gqzw20smr3hx9izvyr0i8zv0h03hadn4c7ks7w8ga5i0kj"; depends=[mvtnorm sensitivityfull]; }; subplex = derive2 { name="subplex"; version="1.8"; sha256="19g5bd39gmcn27xdsklkzxg99x1r5v5q8zcw1iwry31qj24ivhrv"; depends=[]; }; subrank = derive2 { name="subrank"; version="0.9.9.3"; sha256="1sg1krlzck5m7g9klppxcwpbj6dnwlnc1pjvyyyw0hb5raz102w1"; depends=[]; }; - subsamp = derive2 { name="subsamp"; version="0.1.0"; sha256="1bfz2z2qy1war3id8qr1asygwvwxgf2hhlh075hr6bjdkxz0j0nd"; depends=[]; }; subscore = derive2 { name="subscore"; version="3.3"; sha256="01y7bp7nj0p47n69pxvj2gyrcvgj617ymhwhxlqp0jrkns1wqjy5"; depends=[boot cocor CTT irtoys ltm sirt]; }; subscreen = derive2 { name="subscreen"; version="3.0.7"; sha256="0vxwyx08bjha7vgv3lcgigar43f74fr3w7wna6z8viawh3bc7k96"; depends=[bsplus colourpicker data_table dplyr DT jsonlite plyr purrr ranger shiny shinyjs shinyWidgets]; }; subselect = derive2 { name="subselect"; version="0.15.5"; sha256="1xw8ya8kq1b7vn7rp976b3i4bsxvnw53xw34bhsq6xk2c9idk3pw"; depends=[corpcor ISwR MASS]; }; @@ -18922,7 +19216,6 @@ in with self; { suntools = derive2 { name="suntools"; version="1.0.0"; sha256="1qlp0q2ckqg5v3yvbr98k3nr9awgg7ks0l1103nqvm1ssadv7ds2"; depends=[sf]; }; supc = derive2 { name="supc"; version="0.2.6.2"; sha256="0gvrmhvjkfbgi0ivwa8ri69rxj4kqn3xqrc2d5rfrdfm9jmqb56h"; depends=[BH Rcpp]; }; supclust = derive2 { name="supclust"; version="1.1-1"; sha256="1iar957gdarp1m677fjmph0ll8zsqiy2bzkzx03gv37k56w1acpd"; depends=[class rpart]; }; - supcluster = derive2 { name="supcluster"; version="1.0.1"; sha256="131s9q4p2lzs09q5zc702pafnisk1aylq9i52wk27hvpcsh0v1pc"; depends=[gtools mvtnorm]; }; superMICE = derive2 { name="superMICE"; version="1.1.1"; sha256="0wf043vyd89a5jdvm128rqmfrnm9c0lhir35jyzy20rm75aqqh1w"; depends=[mice SuperLearner]; }; superb = derive2 { name="superb"; version="0.95.9"; sha256="1amqfmkn7zfpsmq1r7xdc8x4kpshpjd54jpdwbbwj0mw8qzs2g7n"; depends=[foreign ggplot2 lsr MASS plyr Rdpack shiny shinyBS stringr]; }; superbiclust = derive2 { name="superbiclust"; version="1.2"; sha256="0mk3d820skp99hl8ilwic2fz90yb9dwy2jq3vfjb726gj1qich3b"; depends=[biclust fabia Matrix]; }; @@ -18939,7 +19232,7 @@ in with self; { support_BWS2 = derive2 { name="support.BWS2"; version="0.4-0"; sha256="1zhhgd24r1xsrcf9av8hg7sc5pp165kff44lzzvhh79rl8rzrmyy"; depends=[]; }; support_BWS3 = derive2 { name="support.BWS3"; version="0.2-1"; sha256="074h4c0c42mq6b7kkv1slwsjx0ig9i2mxqf1sqf90c6afsdkzmg3"; depends=[]; }; support_CEs = derive2 { name="support.CEs"; version="0.7-0"; sha256="09snvzvskjhw0l6g1gm5jl7c7idmincmqld1bqhcdinsqiq15h1d"; depends=[DoE_base MASS simex]; }; - supportR = derive2 { name="supportR"; version="1.2.0"; sha256="0sk6dnssg8gggdlsvr7dg8cbn67r6fqsqdh6hqvar8204fwn4xcw"; depends=[data_tree dplyr ggplot2 gh googledrive lifecycle magrittr purrr rlang rmarkdown scales stringr tidyr vegan]; }; + supportR = derive2 { name="supportR"; version="1.4.0"; sha256="0z18rmfn5hmrirks6arkpia9biiq2b6r57sak9yhk6j68yhbkjvs"; depends=[data_tree dplyr ggplot2 gh googledrive lifecycle magrittr purrr rlang rmarkdown scales stringi stringr tidyr vegan]; }; sur = derive2 { name="sur"; version="1.0.4"; sha256="0rp5pwx3m6nzcy73wzmxpsxp9pc7swj2w5b82m0zdxq5kv9hsjsl"; depends=[learnr]; }; surbayes = derive2 { name="surbayes"; version="0.1.2"; sha256="0n01g84cwq5aj4qafk1zf60ka7s9z3q2gkgzp5xw9dx5lgfh7dgb"; depends=[Matrix Rcpp RcppArmadillo rlist]; }; sure = derive2 { name="sure"; version="0.2.0"; sha256="0gwr2j321i2vq98rin5b1m4sl123dm1nih1ghcmj0zd1wd6x5x54"; depends=[ggplot2 goftest gridExtra]; }; @@ -18971,21 +19264,22 @@ in with self; { survSpearman = derive2 { name="survSpearman"; version="1.0.1"; sha256="1b6nj2ikf931926a47a441icbrfjcadwxxnkc35c9yz8nw1kn1ii"; depends=[]; }; survcompare = derive2 { name="survcompare"; version="0.1.2"; sha256="15x37k5zrydak6aby5b1x0q9pnxmk6crxpbfpqjkb3g86b4kpm0q"; depends=[caret glmnet randomForestSRC survival timeROC]; }; surveil = derive2 { name="surveil"; version="0.2.2"; sha256="1bk048mjnviwrls2s25wqrrm3iwi6qjkjlhnpb0i7wjm9cckzz7j"; depends=[BH dplyr ggdist ggplot2 gridExtra Rcpp RcppEigen RcppParallel rlang rstan rstantools scales StanHeaders tidybayes tidyr]; }; - surveillance = derive2 { name="surveillance"; version="1.22.1"; sha256="1gmpyfrvbq19x056xcryx21131vg8c7mvrnn4wmaw3mvxifp6zs6"; depends=[MASS Matrix nlme polyCub Rcpp sp spatstat_geom xtable]; }; + surveillance = derive2 { name="surveillance"; version="1.23.0"; sha256="1xqcm71mfmk3x8kq9sb66a4654c1vblpjz4may4xn7yh62nbcy2n"; depends=[MASS Matrix nlme polyCub Rcpp sp spatstat_geom xtable]; }; survex = derive2 { name="survex"; version="1.2.0"; sha256="09kksjpfikw96njblplgqn33lhfvbpqzsid35cs3wmxhi2xv5fbf"; depends=[DALEX ggplot2 kernelshap patchwork pec survival]; }; survexp_fr = derive2 { name="survexp.fr"; version="1.1"; sha256="0ci65w3w06kwab98q9gb7nb7smq9r25qfibkgfilsg1i5li6p9h5"; depends=[survival WriteXLS]; }; survey = derive2 { name="survey"; version="4.4-2"; sha256="1ggisal5g16p3n03bch7ymawd4hig3fmm02nhxy1z5zh48qhyjla"; depends=[lattice Matrix minqa mitools numDeriv Rcpp RcppArmadillo survival]; }; surveyCV = derive2 { name="surveyCV"; version="0.2.0"; sha256="183ybmfin4xmpsmssw7hskj1rgwpabpa616bzxlir27kygyrswbz"; depends=[magrittr survey]; }; + surveyPrev = derive2 { name="surveyPrev"; version="1.0.0"; sha256="1vp4v27vj9w0vsab6jjy9hvx36lrn01qkx3d0idmx0zwbd0bxy50"; depends=[data_table dplyr ggplot2 labelled matrixStats naniar raster rdhs sf sjlabelled sp spdep stringr SUMMER survey tidyverse]; }; surveybootstrap = derive2 { name="surveybootstrap"; version="0.0.3"; sha256="1ci6gqs1kiizpmddkw9r5nsq9wqdhha3kxhnn6b28fczrsypilf8"; depends=[dplyr functional plyr purrr Rcpp RcppArmadillo stringr]; }; surveydata = derive2 { name="surveydata"; version="0.2.7"; sha256="0wrp92j50a19is4xvh5s82zkp3rvn46gi2344pxinppfax0kjf2h"; depends=[assertthat dplyr DT ggplot2 magrittr purrr rlang scales tidyr]; }; - surveyexplorer = derive2 { name="surveyexplorer"; version="0.1.0"; sha256="1kgnsz2lg0gf7fahby127i4pcav4cigq9qllmp8sk5x7zyrjgwmk"; depends=[dplyr ggplot2 ggupset gt purrr rlang scales stringr tidyr tidyselect]; }; - surveygraph = derive2 { name="surveygraph"; version="0.1.0"; sha256="0bvdvylck3m2891v2aap73ygpqkndrxl4ah1bjpa0lyajgvwlbzh"; depends=[]; }; + surveyexplorer = derive2 { name="surveyexplorer"; version="0.2.0"; sha256="0znrisi4y2nkvxmqv6909mfz8cap9wmq32jafafnmihc99k7a6kq"; depends=[dplyr ggplot2 ggupset gt purrr rlang scales stringr tidyr tidyselect]; }; + surveygraph = derive2 { name="surveygraph"; version="0.1.2"; sha256="06izdycgrggzgyf730fkrd1m3d9a8k2f4fvs9hhihsbkcns2kpgi"; depends=[]; }; surveyplanning = derive2 { name="surveyplanning"; version="4.0"; sha256="19ydgcwyvkhknf4qmlw7j25skcj9a4rd6s8j5n7bdqpljl60zync"; depends=[data_table laeken]; }; surveysd = derive2 { name="surveysd"; version="1.3.1"; sha256="16l17ying9xshfn563kp7nn3hdqrg03ny578sgi08b7zfds5yf8b"; depends=[data_table ggplot2 laeken Rcpp]; }; - surveytable = derive2 { name="surveytable"; version="0.9.2"; sha256="0apzh0jwqb3zniwswafxz5vnn8sn00rigpyb2xlap7i6pp7yfac5"; depends=[assertthat forcats huxtable magrittr survey]; }; + surveytable = derive2 { name="surveytable"; version="0.9.4"; sha256="0prfr3y7xbx6fylc5xpyg74biiqim4sjsfbc4f8khm57nznpg91v"; depends=[assertthat huxtable kableExtra magrittr survey]; }; surveyvoi = derive2 { name="surveyvoi"; version="1.0.6"; sha256="0lkws90jlvr4l40l8h7fkck0skpf9yp4989a3bsqvm670l8qvc1w"; depends=[assertthat doParallel dplyr groupdata2 Matrix nloptr plyr PoissonBinomial progress Rcpp RcppAlgos RcppEigen Rsymphony scales sf tibble vegan withr xgboost]; }; survidm = derive2 { name="survidm"; version="1.3.2"; sha256="0ass7ffpk70ph7dcdjm2f6xyzqaavlkhr1pcij2vcasiy4v1vyiv"; depends=[doParallel doRNG foreach ggplot2 gridExtra KernSmooth np plotly Rcpp survival TPmsm]; }; - survival = derive2 { name="survival"; version="3.5-8"; sha256="1d0qvw4200mjldna9n0acis0fk8xj28wwzqb8c3d4537l92zivbi"; depends=[Matrix]; }; + survival = derive2 { name="survival"; version="3.7-0"; sha256="1vzy8kg159yqnvg733air11la2qrirwcqhn9d67h5c18r67b15nd"; depends=[Matrix]; }; survival_svb = derive2 { name="survival.svb"; version="0.0-2"; sha256="13lipzn1cnkd5dcg8n69cdghycifiin3jnjvgzsv0g60l1jk0lmp"; depends=[glmnet Rcpp RcppEigen survival]; }; survival666 = derive2 { name="survival666"; version="0.5"; sha256="11vs546lrbxnhpxjmwxhh2hnp6kwcf4hzgigi3x9525hr8n9cy01"; depends=[ggplot2 survival survminer]; }; survivalAnalysis = derive2 { name="survivalAnalysis"; version="0.3.0"; sha256="0s4cihmjhg94zcbvr7c1pxdjyc0rpbqlw1gni5xkdhqp4lnqmygf"; depends=[cowplot dplyr forcats ggplot2 gridExtra magrittr purrr rlang scales stringr survival survminer tibble tidyr tidytidbits]; }; @@ -18994,15 +19288,16 @@ in with self; { survivalREC = derive2 { name="survivalREC"; version="1.1"; sha256="14b4zzdjhk258lsy6dhlgdpkpyry6bd01dncrm9g0qj36hlwll3d"; depends=[KernSmooth survival]; }; survivalROC = derive2 { name="survivalROC"; version="1.0.3.1"; sha256="0p6irjs8a9xxgxwax0y9fzapcib237if3iy8g6lzv793mzmsyx41"; depends=[]; }; survivalSL = derive2 { name="survivalSL"; version="0.94"; sha256="03d38fh8pw5m2cd3v6hvcwc9d9b15idzrh9nj48cn6k27cnzf8qg"; depends=[caret date dplyr flexsurv glmnet glmnetUtils hdnom MASS randomForestSRC rpart survival]; }; + survivalVignettes = derive2 { name="survivalVignettes"; version="0.1.6"; sha256="140pwwgfi0h3gh33vwka3fxrpaxzgzf06g3g19nnwmpn4b8xm061"; depends=[survival]; }; survivalmodels = derive2 { name="survivalmodels"; version="0.1.191"; sha256="0iwbpfaqr0yl0ryi1d6y343cprm9ncn8c4qfp5q2vj193pzv10q0"; depends=[Rcpp]; }; survivalsvm = derive2 { name="survivalsvm"; version="0.0.5"; sha256="1b4hrdrqq1z0kfn8vpdwg54388m25df2s6w9i574x3mkxkmkjkga"; depends=[Hmisc kernlab Matrix pracma quadprog survival]; }; - survivoR = derive2 { name="survivoR"; version="2.3.1"; sha256="19yrk1qvpfqq7nqph9gmzyjb28a785gfq4kdbbdam9jmbyjijf9g"; depends=[crayon dplyr DT ggplot2 glue lubridate magrittr purrr readr shiny shinycssloaders shinyjs stringr tidyr]; }; + survivoR = derive2 { name="survivoR"; version="2.3.3"; sha256="08ficbw2bwc7pk5gcis6q6ghm7ivs47j5x3bjw4grrbr1jwssy18"; depends=[crayon dplyr DT ggplot2 glue lubridate magrittr purrr readr shiny shinycssloaders shinyjs stringr tidyr]; }; survminer = derive2 { name="survminer"; version="0.4.9"; sha256="0byh0wxdbjfwdrzsnqv4xlmnik6lj0vkkzfxy7lssk8dv5zmj7nz"; depends=[broom dplyr ggplot2 ggpubr ggtext gridExtra magrittr maxstat purrr rlang scales survival survMisc tibble tidyr]; }; survmixer = derive2 { name="survmixer"; version="1.3"; sha256="00s06h7nn8li4d2kn4yzlnj3px1wkpvnx5w73y98cvrcwm0ad71g"; depends=[]; }; - survobj = derive2 { name="survobj"; version="3.0.0"; sha256="0nwa3yk6pi1pmbd3asm519kqkp9w8w06rd7n4yh76zvbl7yl87y5"; depends=[dplyr ggplot2 survival tidyr]; }; + survobj = derive2 { name="survobj"; version="3.1.0"; sha256="0wd6ghnzvla7lxpg8nnjxmal6v82321q7kpwmvlswp8b4s0rp89l"; depends=[dplyr ggplot2 survival tidyr]; }; survout = derive2 { name="survout"; version="0.1.0"; sha256="1ypxhdirppr6061zk1is473b8k8yy3m14ij4fa66rczs8gqy5sj2"; depends=[cmprsk dplyr openxlsx survival tibble]; }; survsim = derive2 { name="survsim"; version="1.1.8"; sha256="0gv54bd94a6vdz8li0j409qv7r0h4d681l1p9hj9ilzk7y5bfm70"; depends=[eha statmod]; }; - survstan = derive2 { name="survstan"; version="0.0.7"; sha256="13mby2xb3pa4mq0znm9p0i7r0yrp7wz77czk0n0sbb5j899mr1yf"; depends=[actuar BH broom doFuture dplyr extraDistr foreach future generics ggplot2 gridExtra MASS purrr Rcpp RcppEigen RcppParallel Rdpack rlang rstan rstantools StanHeaders survival tibble tidyr]; }; + survstan = derive2 { name="survstan"; version="0.0.7.1"; sha256="1yd634a4bqv5sfmsp2n4xxjjn23ms67iw3zzaa0yqzwldh09z6ng"; depends=[actuar BH broom doFuture dplyr extraDistr foreach future generics ggplot2 gridExtra MASS purrr Rcpp RcppEigen RcppParallel Rdpack rlang rstan rstantools StanHeaders survival tibble tidyr]; }; susieR = derive2 { name="susieR"; version="0.12.35"; sha256="0fhdc3lkhl4s9h2ng72gypy2z3hgk6566jfhwhsfbddyzd22drpd"; depends=[crayon ggplot2 Matrix matrixStats mixsqp reshape]; }; susographql = derive2 { name="susographql"; version="0.1.6"; sha256="1drh8vqkdmvd9v80ibjx3jhnp5f8ggs445mr6r9j69ygw259npbk"; depends=[cli curl data_table glue httr2 jsonlite lubridate readr rlang stringr withr]; }; svDialogs = derive2 { name="svDialogs"; version="1.1.0"; sha256="0z3a5glsi0ab43mdk2yvslxyzg12nbqqqc35jvgzj475mpkbgjif"; depends=[rstudioapi svGUI]; }; @@ -19023,22 +19318,23 @@ in with self; { svgPanZoom = derive2 { name="svgPanZoom"; version="0.3.4"; sha256="1iglgwbyxf5q4716h9ba2cfmxh1qq16zwy54krnawg4580v8ydh2"; depends=[htmlwidgets]; }; svgViewR = derive2 { name="svgViewR"; version="1.4.3"; sha256="0nsm397i1p0z1bbp92k6r12fgkxbgn624wvdwh5r7ydpiam6pvg8"; depends=[Rcpp rjson]; }; svglite = derive2 { name="svglite"; version="2.1.3"; sha256="0m0axxrkiih4wmrp9qh803p4l92fdgrsbxaww38z89widx75da7h"; depends=[cpp11 systemfonts]; }; - svgtools = derive2 { name="svgtools"; version="1.1.0"; sha256="1ipwj3qw8c62381b6yf5mazhg2a3ssddijqrq3bac57i8i6m8az1"; depends=[magick rsvg stringr xml2]; }; + svgtools = derive2 { name="svgtools"; version="1.1.2"; sha256="0jp53x1nlclwsg5adyr1764car0z52rjq95ppijfkqi7yrbbi6ja"; depends=[magick rsvg stringr xml2]; }; svines = derive2 { name="svines"; version="0.2.3"; sha256="0pmipkywpffs5zkvgdncz4ila6wndhvcm73bl73ncg7jqrrsi86r"; depends=[assertthat BH fGarch Rcpp RcppEigen RcppThread rvinecopulib univariateML wdm]; }; svmpath = derive2 { name="svmpath"; version="0.970"; sha256="19b5hfqqsh072l5mbkafm5pjd6qhyj20qd2vq6zl5jjmc45r72w1"; depends=[kernlab]; }; svplots = derive2 { name="svplots"; version="0.1.0"; sha256="0fa3mnsdaz85dy7rr6w454z516simj1zrf08sfbm05rp6jr3c7ws"; depends=[ggplot2]; }; - svrep = derive2 { name="svrep"; version="0.6.3"; sha256="1b36d4f7dd5hf1wxmkwpp7sz9sfykf492xakp0v1b3qsby8gcdbc"; depends=[DBI Matrix mvtnorm survey]; }; + svrep = derive2 { name="svrep"; version="0.6.4"; sha256="110vbkzrlyx8f9arqw39jxw2z4lpggcjq180radyxz2a2is7lwvc"; depends=[DBI Matrix mvtnorm survey]; }; svrpath = derive2 { name="svrpath"; version="0.1.2"; sha256="18h40555jmqpbsnhlwkvc5fl7d0r2bgscdv8amjvhjxmx9y952a2"; depends=[quadprog svmpath]; }; svs = derive2 { name="svs"; version="3.0.0"; sha256="1jn3dbaqpgydkwf9y7hq97nva26vvrpl9zmw2bw4ky1qgzgz1ypb"; depends=[gtools Matrix]; }; svyVGAM = derive2 { name="svyVGAM"; version="1.2"; sha256="01y372p52xjd7j20xk5gwxkl8sfnwdvixx3pb3f6r407ca7l330h"; depends=[survey VGAM]; }; - svydiags = derive2 { name="svydiags"; version="0.5"; sha256="0j47wqmk9045dla9lb5bh73b135qjhw99q9ddiq3ihb2f9m19lfm"; depends=[MASS Matrix survey]; }; + svydiags = derive2 { name="svydiags"; version="0.6"; sha256="13rmy02f5d2ysbi5r9w9mhnyqrsvikhqwjk1d3dgkxgvz9lyqas0"; depends=[MASS Matrix survey]; }; svylme = derive2 { name="svylme"; version="1.5-1"; sha256="1bbg6ha0crg166856h65aly9l5x8y18wv39jymbaczqhs0ba5w1s"; depends=[lme4 Matrix minqa survey]; }; svyweight = derive2 { name="svyweight"; version="0.1.0"; sha256="1pg22gc8798dn9r8gphzlagryybb8gv6l18x650wq82mirnvgl6h"; depends=[gdata survey]; }; swCRTdesign = derive2 { name="swCRTdesign"; version="4.0"; sha256="0q0f6f2fhjgqwvlhs14x6vz1fjq4iadx2g7cypifzpr1pq474nwf"; depends=[lme4 lmerTest]; }; swa = derive2 { name="swa"; version="0.8.1"; sha256="1zy1a6c17vmdkmkwp8vv3niww2zs1m0hylsa0b2cz68vfhnmpim4"; depends=[ggplot2 reshape ROCR]; }; swaRm = derive2 { name="swaRm"; version="0.6.0"; sha256="0p29dyig4zyrjp5gbm17q4s4g2jxl2idq6cqp6zyhsr0n197d38h"; depends=[geosphere lubridate MASS splancs]; }; + swaRmverse = derive2 { name="swaRmverse"; version="0.1.0"; sha256="1z14ys2y42griwbwcjilk552haczlfbazjzwa5g6kvlxjibm1dq0"; depends=[geosphere pbapply Rtsne swaRm trackdf]; }; swag = derive2 { name="swag"; version="0.1.0"; sha256="1w6schbj5gw7278krjzkcwafz3wv7vp7cfsvy17c0i1b5g3qqkpd"; depends=[caret Rdpack]; }; - swagger = derive2 { name="swagger"; version="3.33.1"; sha256="1ldgmy5vjzd11z5yl5a518wkw6y0l469b2zf0lp12hk19jq6k0sj"; depends=[]; }; + swagger = derive2 { name="swagger"; version="5.17.14"; sha256="0vbz6cm6qclgydjlbymjjcsdb94bs8yprk5wmzzp6ny3ghaxjh9k"; depends=[]; }; swamp = derive2 { name="swamp"; version="1.5.1"; sha256="1mj6cqrc19p07v051fg6ikhhbccsg2lvz7wjiakaswqqm0269843"; depends=[amap gplots impute MASS]; }; swaprinc = derive2 { name="swaprinc"; version="1.0.1"; sha256="0r90w387chh4xgqn7jfi2wawsgr8faansp94hrp4vkhdmbbsb86z"; depends=[broom broom_mixed dplyr Gifi lme4 magrittr rlang tidyselect]; }; swatches = derive2 { name="swatches"; version="0.5.0"; sha256="1kivscgka8gn44rjj0s5sjan1s04znnyn0nd37a74zaik0hm8zs0"; depends=[colorspace httr pack stringr xml2]; }; @@ -19068,16 +19364,17 @@ in with self; { sylly_en = derive2 { name="sylly.en"; version="0.1-3"; sha256="0jw48qin172vv7skcpvcpi9wzgav5l9afzb09hhgcxvivbz6dl93"; depends=[sylly]; }; sym_arma = derive2 { name="sym.arma"; version="1.0"; sha256="13fhmgzd50mwlnz9m6nnn4arr4jdqf5h7dgli5lk08da9wx6cy69"; depends=[]; }; symDMatrix = derive2 { name="symDMatrix"; version="2.1.1"; sha256="0xmpw37qkbadqp1idv8qmazdmmv0sd4fwgihg1b97hxzqhsxw0fh"; depends=[bit ff LinkedMatrix]; }; - symSEM = derive2 { name="symSEM"; version="0.2"; sha256="05km458ffmy9sc93zjvfg0c7qcwb62fh3scllw67rv5919lq5hh9"; depends=[caracas metaSEM OpenMx]; }; + symSEM = derive2 { name="symSEM"; version="0.4"; sha256="0zk9a1l1pcyjg43j8jafbms072kzz6qqz514a0kbnyg7ja0bfrmj"; depends=[caracas metaSEM OpenMx]; }; symbol_equation_gpt = derive2 { name="symbol.equation.gpt"; version="1.1.3"; sha256="1z7ww9wvyd4ma7bk0ynp2rbkrajd8b3frb1msh8wn2msj5k7pfpg"; depends=[htmltools markdown nextGenShinyApps r2symbols rstudioapi shiny shinyStorePlus]; }; symbolicDA = derive2 { name="symbolicDA"; version="0.7-1"; sha256="1x1qwrf587lgp9ciakrhiy3wj4g90x4g7r784rr2b97g1xwysjff"; depends=[ade4 cluster clusterSim e1071 RSDA shapes XML]; }; + symbolicQspray = derive2 { name="symbolicQspray"; version="1.0.0"; sha256="03znlsgyli2jdbv4i1k358j1796w11zbiidl3iy9lgv9adrh3cnh"; depends=[BH gmp qspray ratioOfQsprays Rcpp RcppArmadillo RcppCGAL]; }; symengine = derive2 { name="symengine"; version="0.2.6"; sha256="1vwgd3bclsc93s1688xnf65f1hy2l7qn3g25rqsyqshdd5w2hzw9"; depends=[Rcpp]; }; symmetry = derive2 { name="symmetry"; version="0.2.3"; sha256="01sk0v6kh9qi3phl51wk83c5v413ab23qmcqjd3hl2x4hn2rv2z6"; depends=[Rcpp RcppArmadillo Rdpack]; }; symmoments = derive2 { name="symmoments"; version="1.2.1"; sha256="0wl68nsvydfhlbyaj54alj31dphqigyp1s4h2xdapxj4zvwf2sws"; depends=[combinat cubature multipol mvtnorm]; }; symphony = derive2 { name="symphony"; version="0.1.1"; sha256="0bgdhah202sh5mjbzqzk14vkl6xwdxxhri0ik03xh654b4s8hscc"; depends=[class data_table dplyr ggplot2 harmony irlba magrittr Matrix purrr RANN RColorBrewer Rcpp RcppArmadillo rlang tibble tidyr uwot]; }; - symptomcheckR = derive2 { name="symptomcheckR"; version="0.1.1"; sha256="1dh4j950ha9l6kp4y8ygfxp5lp42x6j3bjzdbdpsz9a6hdb3l9az"; depends=[dplyr ggplot2 ggpubr tidyr]; }; + symptomcheckR = derive2 { name="symptomcheckR"; version="0.1.3"; sha256="0mhcn5df3nlli55wv50mmc5gk9yjkgazvagivwk0k033f0k73cjl"; depends=[dplyr ggplot2 ggpubr irr tidyr]; }; syn = derive2 { name="syn"; version="0.1.0"; sha256="12apdjbsazwfxizsw4dj0y3vkdjmki8dzpyv3bi9gnhpysdd1jzx"; depends=[]; }; - synMicrodata = derive2 { name="synMicrodata"; version="1.0.0"; sha256="111ifrnxg253prr3ql9581279r4dy12rbixn29j0zv9j0wjaa190"; depends=[Rcpp RcppArmadillo]; }; + synMicrodata = derive2 { name="synMicrodata"; version="2.0.0"; sha256="03fx8lzg90p8cw237lgn6yqxnxlknximpyafx6jnd9yh2sc3ccjb"; depends=[Rcpp RcppArmadillo]; }; synchronicity = derive2 { name="synchronicity"; version="1.3.10"; sha256="12svf4xzb9s3m1h2ddqgl6q2v57ifsj2p80j8cg2k0543a43pww2"; depends=[BH bigmemory_sri Rcpp uuid]; }; synchrony = derive2 { name="synchrony"; version="0.3.8"; sha256="1zpxg4dkxnvafiyp0j00wig5ymj10bzfg2376x56rzpnabhg57hi"; depends=[]; }; synlik = derive2 { name="synlik"; version="0.1.6"; sha256="0pslag0nb9v872yr383chjdavz8hv9m0ba3pvxhfpshxsfzczcca"; depends=[Matrix Rcpp RcppArmadillo]; }; @@ -19087,14 +19384,16 @@ in with self; { synthACS = derive2 { name="synthACS"; version="1.7.1"; sha256="1s4jawg2g0zy41y0ajacki4nif9m3r0hnaz63yhapcnizc37lyy1"; depends=[acs data_table Rcpp retry]; }; synthesis = derive2 { name="synthesis"; version="1.2.4"; sha256="1yb0z4klz4hd7ab83j3h4x8v2yp2glmnnvz64g76iclx5mcgl6az"; depends=[MASS]; }; synthesisr = derive2 { name="synthesisr"; version="0.3.0"; sha256="0b50d5hfkscggn2f6h8wyljkar08r8cbc0a4l12f809w5hdnjc63"; depends=[stringdist]; }; + synthesizer = derive2 { name="synthesizer"; version="0.2.0"; sha256="1d676d75bf6nh535iz9wp8887203xzfggnvw1z95l599jz6mbymr"; depends=[randomForest]; }; synthpop = derive2 { name="synthpop"; version="1.8-0"; sha256="0ljq3vhprzxj0p5s57pr223n3mxbiwz0p5bdvjcdkw4xykx7zkka"; depends=[broman classInt foreign ggplot2 lattice MASS mipfp nnet party plyr polspline proto randomForest ranger rmutil rpart stringr survival]; }; sys = derive2 { name="sys"; version="3.4.2"; sha256="1cz57jkc159zfgffvcdb40wv9avb5id7pdvgx8q1hs7vy1kcxgdp"; depends=[]; }; sysfonts = derive2 { name="sysfonts"; version="0.8.9"; sha256="124zcnw88xnlhx27qjm07mw59f98jiwspmm65v94k815lqs9qiaj"; depends=[]; }; sysid = derive2 { name="sysid"; version="1.0.4"; sha256="0fr9gf5yjin3zvz850z4r4pqc1r4mwx8d46sl64i4csdm9qnqagy"; depends=[bitops ggplot2 polynom reshape2 signal tframe zoo]; }; syslognet = derive2 { name="syslognet"; version="0.1.2.1"; sha256="0nwni2mn7w43pfasqa2dwy1l6r0ymlkwlsyd5q47fajdr8v1ir0q"; depends=[]; }; systemfit = derive2 { name="systemfit"; version="1.1-30"; sha256="1qhw8gda85lliqhj67zsgva4cb6wihr5hks1c9c34y0n3ywgp52r"; depends=[car lmtest MASS Matrix sandwich]; }; - systemfonts = derive2 { name="systemfonts"; version="1.0.6"; sha256="1mqxb2njfnk5rfwkqc940xbpwd3dh25zac4sapv5mjyddrxnwn6i"; depends=[cpp11]; }; - syt = derive2 { name="syt"; version="0.3.0"; sha256="19vjqkk0ji35zm3xqrjmlahjawnxapmsh0d6v9klb6h05aamd0gg"; depends=[Matrix partitions]; }; + systemfonts = derive2 { name="systemfonts"; version="1.1.0"; sha256="0i5n7zhpmllgmz7064s3v85ycsvkrd9qr8r6q172h803sadhch8r"; depends=[cpp11 lifecycle]; }; + systemicrisk = derive2 { name="systemicrisk"; version="0.4.3"; sha256="05isv0wdx98s824nk0v8r3mqvmnrmsq7ffki40092snsfda3451z"; depends=[lpSolve Rcpp]; }; + syt = derive2 { name="syt"; version="0.4.0"; sha256="1iw3nx0xsjrmmxmvr88nkawix7imdwv2agzhg7hqy6iaa263k6mi"; depends=[Matrix partitions]; }; syuzhet = derive2 { name="syuzhet"; version="1.0.7"; sha256="0cpjg16hwn6843jdxp4h94qjw1wwwblvjzg30w54rac08m62nkxg"; depends=[dplyr dtt NLP rlang textshape tidyr zoo]; }; tLagInterim = derive2 { name="tLagInterim"; version="1.0"; sha256="17fz38bc4r7m3racscr9yn1s8vmzlkkc14144bb3x4sg40ybyfpx"; depends=[R_utils survival]; }; tLagPropOdds = derive2 { name="tLagPropOdds"; version="1.9"; sha256="0bygx77s28izfwdyk6gihcyanch55cha7x52h29kxxp1kaapyf11"; depends=[dplyr R_utils survival]; }; @@ -19109,25 +19408,25 @@ in with self; { table_express = derive2 { name="table.express"; version="0.4.2"; sha256="0iyx45q64ya82054alj1jm53zh2l8m05z743k0ifscyr0lkmp3zm"; depends=[data_table dplyr magrittr R6 rlang tidyselect]; }; table_glue = derive2 { name="table.glue"; version="0.0.3"; sha256="1viaz9swdhgk4ysjhyvl9fr4m430qvmwwblij2b2dadwbdl0z9k4"; depends=[glue stringi]; }; table1 = derive2 { name="table1"; version="1.4.3"; sha256="1wr5cqc6a81b5b2fjvw4swb579q5llf63658l6srhxbxx0qba5l3"; depends=[Formula htmltools knitr yaml]; }; - tableExtra = derive2 { name="tableExtra"; version="1.0.1"; sha256="1rbcxd3rjhvcpayj6d7mh30vkbc7g4mv4qa7552xz3x1wny0n4mm"; depends=[gtable]; }; tableHTML = derive2 { name="tableHTML"; version="2.1.2"; sha256="0x86q0nddkyan9yh2jaldrnc30q1n3q0fnza2fnavzbz5c2hxapw"; depends=[htmltools jpeg magrittr png shiny webshot]; }; tableMatrix = derive2 { name="tableMatrix"; version="0.82.0"; sha256="1sskijhbqakamrk2rv7v5zpjsdi8jw0jl2z96l0vhsvsiq0cz1c8"; depends=[data_table]; }; tablecompare = derive2 { name="tablecompare"; version="0.1.1"; sha256="1n5qykpsn43w9x030ymspryx69k5wd3vlkw471wxpf3cqkxqbkdg"; depends=[data_table glue magrittr purrr rlang tidyselect]; }; - tabledown = derive2 { name="tabledown"; version="0.0.3"; sha256="0pvd9i7ycsarsp7m9hdss86vx0mdrv57iqxk8nyqixfdvrwb48pv"; depends=[data_table dplyr ggplot2 lavaan magrittr mirt MOTE psych tibble tidyselect]; }; + tabledown = derive2 { name="tabledown"; version="1.0.0"; sha256="1l2snq2damqckqi3nqiwlh3hiin3qs0wlkmlim9h9ar87dp56r44"; depends=[data_table dplyr ggplot2 kutils lavaan magrittr mirt MOTE plotly psych tibble tidyr tidyselect]; }; tableeasy = derive2 { name="tableeasy"; version="1.1.2"; sha256="1aa3af245w1frj94j0qynyjv5pvvajas2fmdnyyiknrnrghcn7n2"; depends=[lmtest mgcv nortest survival tableone]; }; tableone = derive2 { name="tableone"; version="0.13.2"; sha256="1br78y68037g5v5jhgi9l393kj2msamdklim8ki40hmxk9bibkxi"; depends=[e1071 gmodels labelled MASS nlme survey zoo]; }; tablerDash = derive2 { name="tablerDash"; version="0.1.0"; sha256="1mnp6lxa7d669r325aynq1n3f35r9sy4v1fvdh4cymbf33s8mkmm"; depends=[htmltools knitr shiny]; }; - tables = derive2 { name="tables"; version="0.9.17"; sha256="1ygf1jir32dwy7617imrr2pkqf5qf894lbxrjm7kqflq3ar6zf5z"; depends=[htmltools knitr]; }; + tables = derive2 { name="tables"; version="0.9.25"; sha256="1yqwnq44ylvqhr0lpadff6y9x362naz00j76jbfirjrrdrwhw05r"; depends=[htmltools knitr]; }; tableschema_r = derive2 { name="tableschema.r"; version="1.1.2"; sha256="1lnl1xybwzg00hqksbj2g6r1hrzwlh2al08hhml0n42khmvpg05g"; depends=[config future httr jsonlite jsonvalidate lubridate purrr R6 RCurl rlist stringr urltools]; }; tablesgg = derive2 { name="tablesgg"; version="0.9-1"; sha256="1gw6pfqa64xq4akbzzn5d1nd9wd505k8lqldy46b40h6ahkr1k78"; depends=[ggplot2 tables]; }; - tablet = derive2 { name="tablet"; version="0.6.5"; sha256="0vqzql4103qfbsy0ryncznmrrk7dsr28awgrrrgccsvkp8fgh7hf"; depends=[dplyr fs kableExtra magrittr reactable rlang spork tidyr yamlet]; }; - tablexlsx = derive2 { name="tablexlsx"; version="0.1.0"; sha256="0rispm626s59g3irdkx8clmjlqsg1vdlyjkzx0z74m13nkgmfw82"; depends=[dplyr magrittr openxlsx]; }; - tabnet = derive2 { name="tabnet"; version="0.5.0"; sha256="1myw6qx2h7szp6p0d5y4vy9mw5nsxmj64ybshp2q22whlbiqad7k"; depends=[coro dplyr hardhat magrittr progress rlang tibble tidyr torch vctrs zeallot]; }; + tablet = derive2 { name="tablet"; version="0.6.8"; sha256="0yg58dh8k32155pm16ai327a33i0bx7qkrd4jvj7mf4qy9ava6v3"; depends=[dplyr fs kableExtra magrittr reactable rlang spork tidyr yamlet]; }; + tablexlsx = derive2 { name="tablexlsx"; version="1.0.0"; sha256="11xnazwsmm3gwmwqnqjv2yc3bwcz5na168dkl8i2g7p983z4999p"; depends=[cli magrittr openxlsx]; }; + tabnet = derive2 { name="tabnet"; version="0.6.0"; sha256="1bvbl1b4i3mx2qf6hjbkk114s1bq76gnhpfasy4c5q2f9k6z33c7"; depends=[coro data_tree dials dplyr ggplot2 hardhat magrittr Matrix parsnip progress purrr rlang stringr tibble tidyr torch tune vctrs withr zeallot]; }; taboolaR = derive2 { name="taboolaR"; version="0.1.0"; sha256="1nv189d6sjjrhc1nr7xhdf22gfh1z93rlcgm2vk7kcs43avm8fwb"; depends=[jsonlite]; }; tabr = derive2 { name="tabr"; version="0.4.9"; sha256="0dsm98lhl7j2bb3z5cliz1f34sv904svhniw6iar1nqh6p9y8a5l"; depends=[crayon dplyr ggplot2 purrr tibble tidyr]; }; tabshiftr = derive2 { name="tabshiftr"; version="0.4.1"; sha256="1ri28zxsxn9bkbq0f47q6mkr889krvixvk63in0jbn9hya77gdy8"; depends=[checkmate crayon dplyr magrittr purrr rlang stringr testthat tibble tidyr tidyselect]; }; tabuSearch = derive2 { name="tabuSearch"; version="1.1.1"; sha256="0396a8hla508na1hmyyhfbl8w10dbg810cln2xyhhvxi7rr223dj"; depends=[]; }; - tabula = derive2 { name="tabula"; version="3.0.1"; sha256="0w26lp0if0lxkr8hrlw57jf5cwqji4q8yqaay6fasy08z4j9lvhf"; depends=[arkhe]; }; + tabula = derive2 { name="tabula"; version="3.1.0"; sha256="03h4i899ciiwhwjwbkkm6x93r3469r1bmw6dfrrya5iykk434v0d"; depends=[arkhe]; }; + tabulapdf = derive2 { name="tabulapdf"; version="1.0.5-3"; sha256="1cavgzchfpwa8mg7g4di5sys41909iwvy6sj0ah7p8cd623k9f7g"; depends=[png readr rJava]; }; tabularMLC = derive2 { name="tabularMLC"; version="0.0.3"; sha256="1gppzbf780ci4vrvy7rd3xa0bvwxca5f05a9xk194xv913vyd440"; depends=[Rcpp RcppArmadillo]; }; tabularaster = derive2 { name="tabularaster"; version="0.7.2"; sha256="1v64cdh098nmlaj8g3dbyssxrwizaqhabsb7djvz60g2x3z2d20k"; depends=[dplyr fasterize magrittr raster silicate spatstat_geom tibble]; }; tabularmaps = derive2 { name="tabularmaps"; version="0.1.0"; sha256="07i76n2fpl2ma6jl3zdbay0zmmaaxrxhv1368xm2d575br42nri4"; depends=[ggforce ggplot2 purrr rlang]; }; @@ -19152,10 +19451,10 @@ in with self; { tangram_pipe = derive2 { name="tangram.pipe"; version="1.1.2"; sha256="0v86xn5rvr6c74cqhiwfxgfb4mizqlf5bqc51870na28i2ariaap"; depends=[dplyr]; }; tapkee = derive2 { name="tapkee"; version="1.2"; sha256="1xgz2cv5jb1hdnl8y8zs4x6p1dk1vv8zbs4wfsj61gpfyf9gkh4f"; depends=[]; }; tapnet = derive2 { name="tapnet"; version="0.3"; sha256="1fjg98m19iwbzijs5b5l4ssrbx1shv1hmgn1166cbni9y76m44sh"; depends=[ape bipartite MPSEM phytools vegan]; }; - tarchetypes = derive2 { name="tarchetypes"; version="0.8.0"; sha256="18vn2mx5nqlib0by5v7493g8gsbzcdbg0dn92cpbf713r69v1lbk"; depends=[digest dplyr fs rlang targets tibble tidyselect vctrs withr]; }; + tarchetypes = derive2 { name="tarchetypes"; version="0.9.0"; sha256="0lb5y3rlm369szabmamhq8rrjh7ybngmd3av0jisi84bwdvrwhxk"; depends=[dplyr fs rlang secretbase targets tibble tidyselect vctrs withr]; }; tardis = derive2 { name="tardis"; version="0.1.4"; sha256="1hfqnszhly6cfi7aii3v9nnrj3md389bflvf3igixrn4wb7mfyi5"; depends=[cpp11 dplyr magrittr purrr rlang stringi stringr tidyr]; }; targeted = derive2 { name="targeted"; version="0.5"; sha256="176h4zswxf33394ngf4kczcan4acs91jnpk5pyz5fw49l5yhkqlg"; depends=[data_table digest futile_logger future_apply lava mets optimx progressr R6 Rcpp RcppArmadillo survival]; }; - targets = derive2 { name="targets"; version="1.6.0"; sha256="1ddpbhvdydxm62k6ay7hpqjh8kh2isjpcdh3gygzcdrghx6d7x65"; depends=[base64url callr cli codetools data_table digest igraph knitr ps R6 rlang secretbase tibble tidyselect vctrs yaml]; }; + targets = derive2 { name="targets"; version="1.7.0"; sha256="1h939mvyxd1wjakcbxjxcmn6a7i23ya1kc89aqwarizsj00hdjil"; depends=[base64url callr cli codetools data_table igraph knitr ps R6 rlang secretbase tibble tidyselect vctrs yaml]; }; tashu = derive2 { name="tashu"; version="0.1.1"; sha256="0rirjalridr79a7j3qz80l2vp6m8paqr97ac241b58756k7nr5j7"; depends=[dplyr drat ggplot2 lubridate plyr randomForest RColorBrewer reshape2]; }; tastypie = derive2 { name="tastypie"; version="0.1.1"; sha256="0a7wq8jg3f0852y9pla1f63dqnkwn3vnb9p7fh9jq9rf75ljcpjk"; depends=[dplyr fmsb ggplot2 packcircles RColorBrewer scales shadowtext tibble]; }; tatest = derive2 { name="tatest"; version="1.0"; sha256="1yd9pdpdhxwpllnj5wxa7ly29qiw8qywx9lx0w3nizczlx35fgjy"; depends=[]; }; @@ -19171,12 +19470,13 @@ in with self; { taxlist = derive2 { name="taxlist"; version="0.2.4"; sha256="144nsiz90nkrm2v4nnhpvdnzpvjg2jh88dkqrm4gjm0drl9s981g"; depends=[biblio foreign stringdist stringi stringr vegdata]; }; taxonbridge = derive2 { name="taxonbridge"; version="1.2.2"; sha256="1ivks3bvwyn0ybvyz6dhsx7qxnlskf4icjkgsichdv4p24w5iwb9"; depends=[dplyr ggplot2 purrr rje stringr vroom withr]; }; taxonomizr = derive2 { name="taxonomizr"; version="0.10.6"; sha256="1g4r42zc9h6f0x875b0nyg56frzn4q7k5vk1jkwczz6ic5cbwigj"; depends=[curl data_table R_utils RSQLite]; }; - taxotools = derive2 { name="taxotools"; version="0.0.132"; sha256="0f24356bmvbm6p18zw9vsyz0zqyijq8757c83mv14mkbqs2apqip"; depends=[plyr rmarkdown sqldf stringdist stringi stringr taxize wikitaxa]; }; + taxotools = derive2 { name="taxotools"; version="0.0.139"; sha256="1nx79a0jfy0xrd83zk3zwk65mdk35lgz564b3fmhdv9rqpmg9q7n"; depends=[plyr rmarkdown sqldf stringdist stringi stringr taxize wikitaxa]; }; tayloRswift = derive2 { name="tayloRswift"; version="0.1.0"; sha256="1gr179hzqxih49v214dqawfhsbsahhyj1lbj77vqv00zq1siigpl"; depends=[]; }; - taylor = derive2 { name="taylor"; version="3.0.0"; sha256="0qxy0kvqylpy3bcp2va4c3453x160zf8kaw34jydg78mibmjlghr"; depends=[crayon ggplot2 glue lifecycle rlang scales tibble vctrs]; }; + taylor = derive2 { name="taylor"; version="3.1.0"; sha256="179kb49ch0178vmvbx2vmrvnld4nq36gvq65bj334338sc85fmsl"; depends=[crayon ggplot2 glue lifecycle rlang scales tibble vctrs]; }; tbd = derive2 { name="tbd"; version="0.1.0"; sha256="1wmfy3p82gckhfsslxzapryfygmircii7x24j6ysfyx52gy8iwf5"; depends=[numDeriv]; }; + tbea = derive2 { name="tbea"; version="1.4.2"; sha256="1lffwmy4qiy24vkhizv8vxhffm35xh7ls818fhn50j7my8gzpip1"; depends=[ape boot coda Rfit]; }; tbl2xts = derive2 { name="tbl2xts"; version="1.0.4"; sha256="1h54yhwbmlzgii202dcrz336d790374p213f1ba6rlm5syad88v9"; depends=[dplyr rlang tibble xts zoo]; }; - tbm = derive2 { name="tbm"; version="0.3-5"; sha256="0qq6zjz37j31jrw0lxsf6vgxwhs8swkqg48jwc320vpz1qjqj7xv"; depends=[basefun coneproj mboost mlt sandwich variables]; }; + tbm = derive2 { name="tbm"; version="0.3-6"; sha256="1d9ny184b5lbjxaxbm1qzrkpar1l5ggh8g92yq2kc46kall04cxh"; depends=[basefun coneproj mboost mlt sandwich variables]; }; tboot = derive2 { name="tboot"; version="0.2.1"; sha256="0pijvs5k28ndnkyy4lwln6wlcag0pnbndg33c5djyaxhns77faz2"; depends=[kernlab quadprog]; }; tbrf = derive2 { name="tbrf"; version="0.1.5"; sha256="1mxfvgb18a62igdh3af4m8x6fl69s25j4x7isd70w744w6jvch3h"; depends=[boot dplyr lubridate purrr rlang tibble tidyr]; }; tcftt = derive2 { name="tcftt"; version="0.1.0"; sha256="0p5ln0sl0fasdn49252g4lvwgwajgl7lh33a4r073ib54hxbj7bk"; depends=[]; }; @@ -19184,14 +19484,14 @@ in with self; { tci = derive2 { name="tci"; version="0.2.0"; sha256="15drq6rvakf8jxmb1g5d7jjl7vnbzg314d809zzq19bicivvxsqj"; depends=[ggplot2 gridExtra knitr mvtnorm Rcpp RcppArmadillo reshape reshape2 truncnorm xtable]; }; tcl = derive2 { name="tcl"; version="0.2.0"; sha256="0n735xyl0fr3zgigw68xpy1ky3rfd2djwg9qhgbgif0cvgrrki1n"; depends=[eRm lattice ltm MASS Matrix numDeriv psychotools rlang]; }; tcltk2 = derive2 { name="tcltk2"; version="1.2-11"; sha256="1ibxld379600xx7kiqq3fck083s8psry12859980218rnzikl65d"; depends=[]; }; - tclust = derive2 { name="tclust"; version="1.5-6"; sha256="1p7y58mklcwq76msh1q8pm2v6v19ja6fy07xg1j07d2zw2wa0phy"; depends=[]; }; + tclust = derive2 { name="tclust"; version="2.0-4"; sha256="0y05aqpmal7ky33hs8n1phai94d7f48ich43jvy4m5wbfxkp2rm6"; depends=[doParallel foreach MASS Rcpp RcppArmadillo]; }; tcpl = derive2 { name="tcpl"; version="3.1.0"; sha256="0s35j9ky49d2f58hg93a47l6j855vm95a3qzwq3i8wd0p2zh1x7b"; depends=[data_table DBI dplyr ggplot2 gridExtra numDeriv plotly RColorBrewer RMariaDB sqldf stringr tcplfit2 tidyr]; }; tcplfit2 = derive2 { name="tcplfit2"; version="0.1.6"; sha256="1znhma87nyy36m3viyh80m6gygqh4iwwh1xj0nw6wh88qal4935p"; depends=[numDeriv RColorBrewer stringr]; }; td = derive2 { name="td"; version="0.0.6"; sha256="1zycwnl7n03jw76n8qrk2zhgnakj6npid25pflj6dnmbjc47ih32"; depends=[RcppSimdJson]; }; tdROC = derive2 { name="tdROC"; version="2.0"; sha256="0m53a9w2365mb1bq9wlj7gwsabnbh9m4ax8klq22frj2dzvlk7xm"; depends=[magrittr Rcpp survival]; }; tdata = derive2 { name="tdata"; version="0.3.0"; sha256="1plgqd4pllj06rc3cvyaqs0c23r3c688fg5h8fzfkbhrrxfpwdn8"; depends=[BH Rcpp]; }; tdaunif = derive2 { name="tdaunif"; version="0.1.1"; sha256="03m8lzg4w1ys0shr2gir5m78c02r71l5pwqgvpcn004kirh3xhwv"; depends=[]; }; - tdcmStan = derive2 { name="tdcmStan"; version="2.0.0"; sha256="0xa80r37abc9fzf9zcf0zpimadwa3glhw3qbn7wbg0cq93cm04df"; depends=[dplyr glue magrittr rlang stringr tibble tidyr tidyselect]; }; + tdcmStan = derive2 { name="tdcmStan"; version="3.0.0"; sha256="1cykg4d1v42s9b2afhjfffbps40dxpgl2slacmhzbxjwlr24ci35"; depends=[dplyr glue magrittr rlang stringr tibble tidyr tidyselect]; }; tdigest = derive2 { name="tdigest"; version="0.4.1"; sha256="1g4yk01lmx8cz5q06bxm3kcsi7c9cvpdfi925csc4qaf5rdrad4y"; depends=[magrittr]; }; tdr = derive2 { name="tdr"; version="0.13"; sha256="0i0hnb3fc4d1mbbxcpzmyfh1w2rahfjabg5iyxym3yjd6377al15"; depends=[ggplot2 lattice RColorBrewer]; }; tdsa = derive2 { name="tdsa"; version="1.1-0"; sha256="0zp0g2jcpl26vszbw3s5v6qc6l8jk2jll0nz0f3gywhiv93mjmgr"; depends=[deSolve mathjaxr numDeriv]; }; @@ -19200,18 +19500,18 @@ in with self; { tea = derive2 { name="tea"; version="1.1"; sha256="0ql7lrxk0ihm49kqsvz79ig8i54rwiy9nxav4v9hy72j9kj5bgjn"; depends=[Matrix]; }; teal = derive2 { name="teal"; version="0.15.2"; sha256="1kgdrkf6rx85ng3h51hgy9zzbmjrlbd68hr3vi2n7pq5fcxnx5qq"; depends=[checkmate jsonlite lifecycle logger magrittr rlang shiny shinyjs teal_code teal_data teal_logger teal_reporter teal_slice teal_widgets]; }; teal_code = derive2 { name="teal.code"; version="0.5.0"; sha256="0dhfvhdb61sp5i1za8lmp823y6la8dkisc8z9s9hvf4ypf63n05a"; depends=[checkmate lifecycle rlang]; }; - teal_data = derive2 { name="teal.data"; version="0.5.0"; sha256="1ifp9pzd4a396f1kqgf79h31wfw9dhva16lwyq7im3dwqwrji3xi"; depends=[checkmate lifecycle rlang teal_code]; }; + teal_data = derive2 { name="teal.data"; version="0.6.0"; sha256="05j05i6mxblza2xvmmx3bvhks2p30jrwm11i0lx3bh5n88hch02w"; depends=[checkmate lifecycle rlang teal_code]; }; teal_logger = derive2 { name="teal.logger"; version="0.2.0"; sha256="1kji87sajwh06r2gqbj6gyg7q4kcw6am9cf2clwr39qg9srq2lri"; depends=[glue lifecycle logger shiny withr]; }; - teal_modules_clinical = derive2 { name="teal.modules.clinical"; version="0.9.0"; sha256="1f8dz6lvv0syr2f1qkwk365d8i936hd8i464svmawmcjzvs5mac6"; depends=[broom checkmate dplyr DT formatters ggplot2 ggrepel lifecycle logger rlistings rmarkdown rtables scales shiny shinyjs shinyvalidate shinyWidgets teal teal_code teal_data teal_logger teal_reporter teal_transform teal_widgets tern tern_gee tern_mmrm vistime]; }; + teal_modules_clinical = derive2 { name="teal.modules.clinical"; version="0.9.1"; sha256="1fvy0xcbxjfskdyp3y4y70y7q6swmkjzpswkw7z3fq856fbnaz75"; depends=[broom checkmate cowplot dplyr DT ggplot2 ggrepel lifecycle rlistings rmarkdown rtables scales shiny shinyjs shinyvalidate shinyWidgets teal teal_code teal_data teal_logger teal_reporter teal_transform teal_widgets tern tern_gee tern_mmrm vistime]; }; teal_modules_general = derive2 { name="teal.modules.general"; version="0.3.0"; sha256="0j07ak6g2rk8b16pix853j7hvyhac580akflwxxb97zvzipy51qx"; depends=[checkmate dplyr DT forcats ggmosaic ggplot2 logger scales shiny shinyjs shinyTree shinyvalidate shinyWidgets stringr teal teal_code teal_data teal_logger teal_reporter teal_transform teal_widgets tern tibble tidyr]; }; teal_reporter = derive2 { name="teal.reporter"; version="0.3.1"; sha256="1hgp17rjmwjqi00w28qgh5h13vn58wnwhx4y8825qnc8v45vchb5"; depends=[bslib checkmate flextable htmltools knitr lifecycle R6 rmarkdown shiny shinybusy shinyWidgets yaml zip]; }; - teal_slice = derive2 { name="teal.slice"; version="0.5.0"; sha256="0i797v717jy7w6qcg82pl1rmr6hdp750wxzigynv6mcipibfms4r"; depends=[bslib checkmate dplyr htmltools jsonlite lifecycle logger plotly R6 shiny shinycssloaders shinyjs shinyWidgets teal_data teal_logger teal_widgets]; }; + teal_slice = derive2 { name="teal.slice"; version="0.5.1"; sha256="0vnp61cmmbxfjmli7y9i9b388yh6rqic33a061s2k61j925cisg0"; depends=[bslib checkmate dplyr htmltools jsonlite lifecycle logger plotly R6 shiny shinycssloaders shinyjs shinyWidgets teal_data teal_logger teal_widgets]; }; teal_transform = derive2 { name="teal.transform"; version="0.5.0"; sha256="0g171h3lqym99w6h4msm00xx88fc23fq67n8lxal55zdrvv1flg0"; depends=[checkmate dplyr lifecycle logger rlang shiny shinyjs shinyvalidate teal_data teal_logger teal_widgets tidyr tidyselect]; }; teal_widgets = derive2 { name="teal.widgets"; version="0.4.2"; sha256="0qdjc1w1kh0k155vp0w0rs5yh26lmds9i6xv4dhrgnn7h2gaqgv1"; depends=[bslib checkmate ggplot2 htmltools lifecycle rtables shiny shinyjs shinyWidgets styler]; }; tealeaves = derive2 { name="tealeaves"; version="1.0.6"; sha256="0gfga3fx047kpngwrkinsq3w5f34svnh3vpfjnc78bvrmmm70wqw"; depends=[checkmate crayon dplyr furrr future glue magrittr purrr rlang stringr units]; }; teamcolors = derive2 { name="teamcolors"; version="0.0.4"; sha256="0mqrjnkpxzv7armgbl9nwz42pjb9l94yml5lp41rhjj9414b2729"; depends=[dplyr ggplot2 tibble tidyr]; }; teamr = derive2 { name="teamr"; version="0.0.1"; sha256="01gngws8lf093598wlzrv4ls74avsli6ij33v1plqgc0znyaw4s2"; depends=[httr jsonlite R6]; }; - tectonicr = derive2 { name="tectonicr"; version="0.2.95"; sha256="0ywq3iq6p4gfrdrmhh4fxw4gkw2ff1h55zlad6c579yc138yq5an"; depends=[boot dplyr ggplot2 RColorBrewer sf smoothr spatstat_explore spatstat_geom spatstat_utils terra tidyr viridis zoo]; }; + tectonicr = derive2 { name="tectonicr"; version="0.3.2"; sha256="0w2pg7b3bk4vc72aw2n7hcp47aq7a25l41m9yh3x3a6ssnzcg350"; depends=[boot dplyr ggplot2 RColorBrewer sf smoothr spatstat_explore spatstat_geom spatstat_univar spatstat_utils terra tidyr viridis zoo]; }; teda = derive2 { name="teda"; version="0.1.1"; sha256="0yx469jbkw9cgx73zi5mkykrdn16kn01zh524x9411314aa32avx"; depends=[]; }; tehtuner = derive2 { name="tehtuner"; version="0.3.0"; sha256="1m1gkkl0kgjrlkbh3vz8lh64gq6l8v3vay0977lwx8g3yzs40z0g"; depends=[earth foreach glmnet party randomForestSRC Rdpack rpart stringr SuperLearner]; }; teigen = derive2 { name="teigen"; version="2.2.2"; sha256="1k5k3lj6av5pyx130w1j7avd0jdmm12ryc71mi5mq49sp95ndl4v"; depends=[]; }; @@ -19219,22 +19519,24 @@ in with self; { telegram = derive2 { name="telegram"; version="0.6.0"; sha256="02wwa115f0vz2d9y4nf01397hjkpc3cv2gdl47snrajrm41gji7y"; depends=[curl httr jsonlite R6]; }; telegram_bot = derive2 { name="telegram.bot"; version="3.0.0"; sha256="0fqv2piddb8i37rpvw6li25jhc9mbi7fyqmib90xah6qmlaji02g"; depends=[curl httpuv httr jsonlite openssl R6]; }; telemetR = derive2 { name="telemetR"; version="1.0"; sha256="04samfr6m3lnyvq03an5an6z4iyqizn3qyjjblphrix2p5wrl37r"; depends=[dplyr ggplot2 lubridate tidyr zoo]; }; - tempR = derive2 { name="tempR"; version="0.9.9.23"; sha256="1s1qyvxc0mz2wydyz4ba94sh71b4d52wzfiq9qsw6y5clff3282p"; depends=[]; }; + telescope = derive2 { name="telescope"; version="0.1-0"; sha256="1r6ciiy12jy7z4hb2jhgv1ml7p57rqcpfbz2fs0bn5bc1jbzm3ch"; depends=[abind bayesm DirichletReg extraDistr MCMCpack mvtnorm]; }; + telraamStats = derive2 { name="telraamStats"; version="1.1.2"; sha256="1n589sj7apwanq3v388f0v76mdhmk092n8mj91mwkdfjrn3r73ha"; depends=[config dplyr ggplot2 httr jsonlite lubridate paletteer purrr reshape2 rlang scales tidyr yaml]; }; + tempR = derive2 { name="tempR"; version="0.10.1.1"; sha256="0ybf0kspzi7707bzdsra34hrgjizzxlh6yg2yz2i5rxhmfyddnb7"; depends=[]; }; tempdisagg = derive2 { name="tempdisagg"; version="1.1.1"; sha256="11dr5z1s9d8d2xsl4gm9x15v7jyi88f5c5gk05layh5nl2c1bxni"; depends=[]; }; temperatureresponse = derive2 { name="temperatureresponse"; version="0.2"; sha256="1id3wjzfs132hj8cm7gpf105qaay9dff07ixah9rmn5sk6si0zmq"; depends=[AICcmodavg broom dplyr minpack_lm numDeriv rootSolve]; }; templateICAr = derive2 { name="templateICAr"; version="0.6.4"; sha256="15f2bv4vcsnqcb2rnpa1ylhxj8a511ab3mil3b8n9icffpzgahy0"; depends=[abind excursions expm fMRItools ica Matrix matrixStats pesel Rcpp RcppEigen SQUAREM]; }; templates = derive2 { name="templates"; version="0.4.0"; sha256="07zkq1lnnlj9ik7vyxl4yphhj8pph4qql6qg7kvqd432hy43mwvm"; depends=[magrittr stringr]; }; templr = derive2 { name="templr"; version="0.2-0"; sha256="1s2awbcf3vaalbrwz5ryfiz69vhapy9h6jhy6zgzqqs5l1aw4ad0"; depends=[jsonlite remotes xml2]; }; - tempted = derive2 { name="tempted"; version="0.1.0"; sha256="0s2yqb5fn9aihjhkwffgd010ziihg3xx6j5i5d3a4vy2ki2l2a0w"; depends=[ggplot2 np]; }; + tempted = derive2 { name="tempted"; version="0.1.1"; sha256="1chlnrlsjdw4b3bi4yh292x7n3yqnihsmf9cpm3l18rdpb964x77"; depends=[ggplot2 np]; }; tenispolaR = derive2 { name="tenispolaR"; version="0.1.4"; sha256="0xpp1hi3xnkg55aixgy2bp5476i503h8gsiss9x7f15274kx0d7s"; depends=[stringr]; }; tensor = derive2 { name="tensor"; version="1.5"; sha256="19mfsgr6vz4lgwidm80i4yw0y1dr3n8i6qz7g4n2xa0k74zc5pp1"; depends=[]; }; tensorA = derive2 { name="tensorA"; version="0.36.2.1"; sha256="1dvxc4d5c8k3mqkx6bjgfmnb98rrdd1rsazyva76mzvxzrhq4n06"; depends=[]; }; tensorBF = derive2 { name="tensorBF"; version="1.0.2"; sha256="1dw1a6xqcsl4isbzbfiplgqq5nak5n9ffzm23mzzmkh1r1a8kl1y"; depends=[tensor]; }; tensorBSS = derive2 { name="tensorBSS"; version="0.3.8"; sha256="1chgkdshjpxzy0cxkgjzpr5k4v2hyad1vchrxyqhsj9isfic2581"; depends=[abind fICA ggplot2 ICtest JADE Rcpp RcppArmadillo tensor tsBSS]; }; - tensorEVD = derive2 { name="tensorEVD"; version="0.1.1"; sha256="024127fv1gc631i8dfczg350gaqims4i6amhbq7v8ws2g1sf1hi9"; depends=[]; }; - tensorMiss = derive2 { name="tensorMiss"; version="0.1.1"; sha256="0kl20c0z1x38z85pm88ld64xsmlbb9pi0dirwraykm268j7kxfqb"; depends=[Rcpp RcppEigen rTensor]; }; - tensorTS = derive2 { name="tensorTS"; version="1.0.1"; sha256="0qn6h3icgcg7ipyjk0cc9pbc97d58m56f1w8ijydms42r2xcnipg"; depends=[abind expm MASS Matrix pracma rTensor tensor]; }; - tensorflow = derive2 { name="tensorflow"; version="2.15.0"; sha256="16650x0skqi4nyd2zmgdfj574gnw98k00d13rap7n95cv7sv9abw"; depends=[config lifecycle processx reticulate rstudioapi tfautograph tfruns yaml]; }; + tensorEVD = derive2 { name="tensorEVD"; version="0.1.3"; sha256="0gqcnigv5hwp955q21ms7xgn30926yqi8bg8vnc409jp9mz5km8a"; depends=[]; }; + tensorMiss = derive2 { name="tensorMiss"; version="1.1.1"; sha256="1q8rdlm829if88cq76iaarwgryawl43ry2gm8k3q8yw3rndfj1v9"; depends=[Rcpp RcppEigen rTensor]; }; + tensorTS = derive2 { name="tensorTS"; version="1.0.2"; sha256="11kmp5qy54rhb302jwpncsbqifgqn7zivav8ph1qbz3f3911chw2"; depends=[abind expm MASS Matrix pracma rTensor tensor]; }; + tensorflow = derive2 { name="tensorflow"; version="2.16.0"; sha256="113ikbg2k56zigxwgxy242vxpikxkfkv150wn21zyfn9885wgbzm"; depends=[config lifecycle processx reticulate rstudioapi tfautograph tfruns yaml]; }; tensorregress = derive2 { name="tensorregress"; version="5.1"; sha256="13khpymifjd8bsqb5j43kaqbpampzifp0lzmh4m3hi17jhcg33aq"; depends=[MASS pracma]; }; tensorsparse = derive2 { name="tensorsparse"; version="3.0"; sha256="0xx003nh5bi87cbsqb7ikpcs4yhjhphh7pybzzas44qkwbn4fn1k"; depends=[]; }; tensr = derive2 { name="tensr"; version="1.0.1"; sha256="1z6b3ra7fgn88mxbhsq65x3frj5j7p17n119s9kbw7sg9y633vfx"; depends=[assertthat]; }; @@ -19242,28 +19544,29 @@ in with self; { tergmLite = derive2 { name="tergmLite"; version="2.6.1"; sha256="03dr3bfi5ywavfijkc6gmci8i1kmbsh26awhl7748mn9wcsgs2pc"; depends=[ergm network networkDynamic Rcpp statnet_common tergm tibble]; }; term = derive2 { name="term"; version="0.3.5"; sha256="1ig1hvyv18d1x19jmvkg66m6nn8kdlffj5hx70vzd4sxz68j2k0v"; depends=[chk extras lifecycle purrr rlang universals vctrs]; }; terminaldigits = derive2 { name="terminaldigits"; version="0.1.0"; sha256="0vj7pylr410wi59qj2313iximsyl0v9ffg7z9gcfg720g5zrvfkm"; depends=[discretefit Rcpp]; }; - tern = derive2 { name="tern"; version="0.9.3"; sha256="0znhq8sz5v229rlxgqgfzdlzc5vr8fwlz6xccycmqsq5w2c7zjhf"; depends=[broom car checkmate cowplot dplyr emmeans forcats formatters ggplot2 gridExtra gtable labeling lifecycle magrittr Rdpack rlang rtables scales survival tibble tidyr]; }; - tern_gee = derive2 { name="tern.gee"; version="0.1.3"; sha256="1nnficsy1irry6fjx6bdlq2jm6vpgfkl8h9z780y29rhid5jbv4d"; depends=[checkmate emmeans formatters geeasy geepack nlme rtables tern]; }; - tern_mmrm = derive2 { name="tern.mmrm"; version="0.3.0"; sha256="0iiyqcc34dicgfvr2wk499m234cb9nb4zxndgxdb2xnzisx53inq"; depends=[checkmate cowplot dplyr emmeans formatters generics ggplot2 lifecycle magrittr mmrm parallelly rlang rtables tern tidyr]; }; + tern = derive2 { name="tern"; version="0.9.4"; sha256="1byv3q2kjd1aibzxhvwnm7fl2vsz069pxmcjx1zjl6w6453y5s3h"; depends=[broom car checkmate cowplot dplyr emmeans forcats formatters ggplot2 gridExtra gtable labeling lifecycle magrittr MASS Rdpack rlang rtables scales survival tibble tidyr]; }; + tern_gee = derive2 { name="tern.gee"; version="0.1.4"; sha256="03znf66m3alai8n75g9sxl47wsnai6kgav8pm28zk3nimcx0b0bw"; depends=[checkmate emmeans formatters geeasy geepack nlme rtables tern]; }; + tern_mmrm = derive2 { name="tern.mmrm"; version="0.3.1"; sha256="1jklh18fmhcjpkp85cpf4q1xcgidp8rr9py5qfns2iwkac530sdn"; depends=[checkmate cowplot dplyr emmeans formatters generics ggplot2 lifecycle magrittr mmrm parallelly rlang rtables tern tidyr]; }; ternvis = derive2 { name="ternvis"; version="1.2"; sha256="057i6i3ygxrin0npc18gsg3dpdldzafyb5sr6lix5mhy6b09lkxf"; depends=[dichromat maps quadprog]; }; - terra = derive2 { name="terra"; version="1.7-71"; sha256="0dq47d5irkplgxcv0h0xgawwf9cc48vygg94zdiqppg5cspz7dqx"; depends=[Rcpp]; }; + terra = derive2 { name="terra"; version="1.7-78"; sha256="0zjb5m5nh1r307g9lm5s6va5hsvmy4b06c7pznp724waknvmd2b5"; depends=[Rcpp]; }; terrainmeshr = derive2 { name="terrainmeshr"; version="0.1.0"; sha256="1xab6wzq2izzdvsss1rlgp5m3cn45naxhymq6cglipj0fd792jbr"; depends=[Rcpp]; }; terrainr = derive2 { name="terrainr"; version="0.7.5"; sha256="1bxwv94pkd4yskhqcwg891caiknipgr2lwcmy54znr8gchsm5527"; depends=[base64enc ggplot2 glue httr magick png rlang sf terra unifir units]; }; tessellation = derive2 { name="tessellation"; version="2.3.0"; sha256="0l8ffw7szmfd51lf9x8vh673zq0zg8rrx1527hgllddk82kyhmia"; depends=[colorsGen cxhull english hash Polychrome R6 rgl Rvcg scales sets]; }; tesselle = derive2 { name="tesselle"; version="1.4.0"; sha256="10ahssk9qaj7a0x82364cdqigx8af1vrxvnm2z44x7j688mc17cg"; depends=[dimensio folio isopleuros kairos khroma nexus tabula]; }; tesseract = derive2 { name="tesseract"; version="5.2.1"; sha256="1zhpl6pbi7gwwc9y1d8cd7hb21ljcs561lyysjva4cfmqm0sdazz"; depends=[curl digest pdftools rappdirs Rcpp]; }; - test2norm = derive2 { name="test2norm"; version="0.2.1"; sha256="1llzvdggjvc72qwkv9iiqxx7prj3hnr9bqpwsib4qmfpmmxsif37"; depends=[mfp]; }; - testCompareR = derive2 { name="testCompareR"; version="1.0.2"; sha256="1k4y7hk7f9bs0bkcmi434khfg1c0lr930l50rydvjlwdgbhfy4k1"; depends=[]; }; + test2norm = derive2 { name="test2norm"; version="0.3.0"; sha256="1qfnzxry84y9y22xp1cfhpg9q5yrchhhasn3p81qx7ay9ii9n7j7"; depends=[mfp2]; }; + testCompareR = derive2 { name="testCompareR"; version="1.0.3"; sha256="09pfdnc0hfaj8f3vgsprm5pjlwygliflm40dk3cnr71v89ihddxg"; depends=[]; }; testDriveR = derive2 { name="testDriveR"; version="0.5.2"; sha256="144bni3dg7bdmxnxyyal94j1nddqshgys9wfkdcc262n8y3v13i5"; depends=[]; }; testarguments = derive2 { name="testarguments"; version="0.0.1"; sha256="1x77z0pljfi6z4bs6db3zsjbpyypsd3jbd0ykh4pq07595phh8x5"; depends=[dplyr ggplot2 magrittr plyr reshape2]; }; testassay = derive2 { name="testassay"; version="0.1.1"; sha256="1gc35s5an0cpvadwx4bswy5lzcp01az3gnkjhvph6sm3pi3xjxm7"; depends=[]; }; testcorr = derive2 { name="testcorr"; version="0.2.0"; sha256="0bqhf4p4csyd430240d8gh09axpz3h108fh78sbgpyqdhiq3d1fh"; depends=[forcats ggplot2 knitr reshape2 scales]; }; testdat = derive2 { name="testdat"; version="0.4.2"; sha256="0ybmw0i7pr40h720iwpzvyyr26zb7akjkwbmw6243f644yl4rr0w"; depends=[dplyr glue lifecycle rlang stringr testthat tidyselect]; }; testequavar = derive2 { name="testequavar"; version="0.1.5"; sha256="1b8xrv7y3502wb7d2mj20lfdpignc7bs80zbrjy8w3f5qjxlalyc"; depends=[]; }; - tester = derive2 { name="tester"; version="0.1.7"; sha256="1x5m43abk3x3fvb2yrb1xwa7rb4jxl8wjrnkyd899ii1kh8lbimr"; depends=[]; }; + tester = derive2 { name="tester"; version="0.2.0"; sha256="02q2l0c38ddzlh2jwbzkcyhh2k5a4gnfm8khl8cqvjkjhldi9j5y"; depends=[]; }; + testex = derive2 { name="testex"; version="0.2.0"; sha256="0rf7smgb7ha0wfaslxcy97xhdx4bqnj48ifxf20v2h33psqlr374"; depends=[]; }; testforDEP = derive2 { name="testforDEP"; version="0.2.0"; sha256="1mgzhj8b35r5cm4bl0nnyxj0h7rwd28d17qvgvaky2kvm2r83cf9"; depends=[Hmisc minerva Rcpp]; }; testit = derive2 { name="testit"; version="0.13"; sha256="104dcxdmzgj340mwk4lpw1y6j1xc4rv4a2v09ckx3nvbmdl73m4h"; depends=[]; }; - testthat = derive2 { name="testthat"; version="3.2.1"; sha256="1ba80zk9jzs91xl82bykhrvvgamfvp1h189rfq099h813dhhx60x"; depends=[brio callr cli desc digest evaluate jsonlite lifecycle magrittr pkgload praise processx ps R6 rlang waldo withr]; }; + testthat = derive2 { name="testthat"; version="3.2.1.1"; sha256="1xz94i0r62lslyqya8gz6i2r100wi26y5c2822v2i7lkflwwx1fp"; depends=[brio callr cli desc digest evaluate jsonlite lifecycle magrittr pkgload praise processx ps R6 rlang waldo withr]; }; testthatmulti = derive2 { name="testthatmulti"; version="0.1.0"; sha256="1w1bwqjk721g4zvz3chx65rfvr47w3z2savx0qnh0sk09rj0zx50"; depends=[]; }; testthis = derive2 { name="testthis"; version="1.1.1"; sha256="0csragn695698dpkr9d3md0g81bzpy5mybd0jik669q9cs8sdzh2"; depends=[assertthat devtools fs magrittr pkgload rprojroot stringi testthat usethis]; }; testtwice = derive2 { name="testtwice"; version="1.0.3"; sha256="06fr13ww2wqk753p0cnl1ldn3nqrvdfnz0lgkpldcn0xwiwjh2x2"; depends=[mvtnorm]; }; @@ -19274,9 +19577,9 @@ in with self; { texmex = derive2 { name="texmex"; version="2.4.9"; sha256="1vdrhf4mn7c54w9zz0k4xpmvg9w3ysi67ncbr4pbllnarxa582yz"; depends=[ggplot2 mvtnorm Rcpp]; }; texor = derive2 { name="texor"; version="1.3.0"; sha256="12sjrxg82ynjs3s4mah5mhm011d9qmmv1s10kbna69n84j4a6vlc"; depends=[cli logger pdftools rebib rjtools rmarkdown stringr tinytex whisker xfun yaml]; }; texreg = derive2 { name="texreg"; version="1.39.3"; sha256="0kbdnxfgdin4vydrw84xzbw9xldvn8paikij9ya8976la6gpf6il"; depends=[httr]; }; - text = derive2 { name="text"; version="1.2.0"; sha256="17cy9napn2ffh91klv1chp61mxk6ddcdq82bcgfi17mapplfp2hk"; depends=[cowplot dplyr furrr future ggplot2 ggrepel magrittr overlapping parsnip purrr recipes reticulate rlang rsample stringi tibble tidyr tune workflows yardstick]; }; + text = derive2 { name="text"; version="1.2.1"; sha256="06rvcdl06ki3qw46r7yp21jjjbgmmr2cyb0rgr7d1kqcwl12gcg4"; depends=[cowplot dplyr furrr future ggplot2 ggrepel magrittr overlapping parsnip purrr recipes reticulate rlang rsample stringi tibble tidyr tune workflows yardstick]; }; text_alignment = derive2 { name="text.alignment"; version="0.1.4"; sha256="1zw0hxrplpvn2w36q9cwm7s8hxixdin9yzkwj1fhxh5sgc7fq471"; depends=[Rcpp]; }; - text2map = derive2 { name="text2map"; version="0.1.9"; sha256="0ikiwfhm0m6ygzgx05ds1vhxlvvajb20fs5aif6h35y3zb5p24zl"; depends=[ClusterR doParallel dplyr fastmatch foreach igraph kit Matrix permute qgraph rlang rsvd stringi text2vec tibble]; }; + text2map = derive2 { name="text2map"; version="0.2.0"; sha256="0fs51r2gz2kzyqd9i9vbyyvd8lx9ng40vxw3ncrph22b3vn9q5dl"; depends=[ClusterR doParallel dplyr fastmatch foreach igraph kit Matrix permute qgraph rlang rsvd stringi text2vec tibble]; }; text2sdg = derive2 { name="text2sdg"; version="1.1.1"; sha256="133cqh9j3akqfh0m3cbi6splbmzp7plm5gxaiv2w0f0qih31f5fk"; depends=[corpustools dplyr ggplot2 lifecycle magrittr ranger stringr text2sdgData tibble tidyr]; }; text2sdgData = derive2 { name="text2sdgData"; version="0.1.1"; sha256="0wqfpkixbgmbd0i13a0vrzjnw2fj0qiyxrmd7grlyjkk1cq8i7yn"; depends=[]; }; text2speech = derive2 { name="text2speech"; version="1.0.0"; sha256="0xgdwwzfbc1l8bj3xvrj67xnhhq6si7n1cq3fgznqhw4ycxkgih7"; depends=[aws_signature cli conrad dplyr googleAuthR googleLanguageR knitr magrittr tidyr tuneR withr]; }; @@ -19287,7 +19590,7 @@ in with self; { textab = derive2 { name="textab"; version="1.0.1"; sha256="1z965iw7457yldz6nm2hfjq6c5q12j1cza7v0jkbgi9zaydsbml2"; depends=[]; }; textcat = derive2 { name="textcat"; version="1.0-8"; sha256="17kl76m6065ci84p4ii7fxhwg1fckwf8690m71w9rbkbax3h2rfb"; depends=[slam tau]; }; textclean = derive2 { name="textclean"; version="0.9.3"; sha256="0kgjh6c4f14qkjc4fds7q7rpf4nkma3p0igm54fplmm3p853nvrz"; depends=[data_table english glue lexicon mgsub qdapRegex stringi textshape]; }; - textdata = derive2 { name="textdata"; version="0.4.4"; sha256="1hz74sdhypf67w1p71igwaqdiv0w635lbdm4hvd0zdzhz1w1cxd7"; depends=[fs rappdirs readr tibble]; }; + textdata = derive2 { name="textdata"; version="0.4.5"; sha256="0vvk2g3nb5szla0qlj5ld78x8a4533fqyz8ffljxy71kzaqd07h2"; depends=[fs rappdirs readr tibble]; }; texteffect = derive2 { name="texteffect"; version="0.3"; sha256="1qcbr18h3vakh6ymw4axzqcqrpss6z68a592xl879b82l2nlq8a7"; depends=[boot ggplot2 MASS]; }; texter = derive2 { name="texter"; version="0.1.9"; sha256="1vj1dlv2dyb3hyr60p91sh4p514i0m7gf86zk32xbdyv6k9zdkmf"; depends=[dplyr ggplot2 magrittr plyr purrr stopwords stringr textdata tidyr tidytext]; }; textgRid = derive2 { name="textgRid"; version="1.0.1"; sha256="1wi5vq5f7ixhz39l5hqi2jlmjjacx4lyrs4h8xfbd47pj6g16lc6"; depends=[]; }; @@ -19297,14 +19600,15 @@ in with self; { textometry = derive2 { name="textometry"; version="0.1.6"; sha256="0frxwi3n7syjgjxgzc4ync9svd25bq2zyppiyrla1n85dawi3r8f"; depends=[]; }; textplot = derive2 { name="textplot"; version="0.2.2"; sha256="1ag2h365zsx0fxbl05s2yfhf1q13p40akvbqg4qwsb5ynh2a56bf"; depends=[data_table lattice Matrix]; }; textrank = derive2 { name="textrank"; version="0.3.1"; sha256="0a777wchiax0y8jprvz5xw8h1xh7yvad0wrqhkgbqy5p3cvlcih6"; depends=[data_table digest igraph]; }; + textrar = derive2 { name="textrar"; version="0.8.0"; sha256="0bl6f1v0vkbjjlq31wm1j4890jz1zmacsqf7drpirmcn38pq61zh"; depends=[httr jsonlite]; }; textrecipes = derive2 { name="textrecipes"; version="1.0.6"; sha256="0c4l54vqawnwl1341mk5jvqwj1r0dwdprbp2fh362493c8fy04iv"; depends=[cpp11 dplyr generics glue lifecycle magrittr Matrix purrr recipes rlang SnowballC tibble tokenizers vctrs]; }; textreg = derive2 { name="textreg"; version="0.1.5"; sha256="0h44z5hyndnvzd9axix7gpmhbdx347dfgxw9r8w38kyw6dklbjy6"; depends=[NLP Rcpp tm]; }; textreuse = derive2 { name="textreuse"; version="0.1.5"; sha256="1mva0f6pk0kpfw0vf90qw3a25f1i3imdhk2s7hxyzans0z2237jd"; depends=[assertthat BH digest dplyr NLP Rcpp RcppProgress stringr tibble tidyr]; }; - textshape = derive2 { name="textshape"; version="1.7.3"; sha256="0k9injxykgj2qprc7dygd7gafvcbh3r9x84qzaa1al21pk0dz7ds"; depends=[data_table slam stringi]; }; - textshaping = derive2 { name="textshaping"; version="0.3.7"; sha256="0hpcjz66ykji89g2lzpp6hfkz10388py8vn2ss08n4xl3yz4v4ps"; depends=[cpp11 systemfonts]; }; + textshape = derive2 { name="textshape"; version="1.7.5"; sha256="1g193dg4rhw8a1iwkyqsswlj95h9irm9xziclwc1mhd3jm5wyify"; depends=[data_table slam stringi]; }; + textshaping = derive2 { name="textshaping"; version="0.4.0"; sha256="0ylx4fdvm64cxcy62q84in3nrj7q8r7mvd8vwq6mcy5jddw41s9m"; depends=[cpp11 lifecycle systemfonts]; }; textstem = derive2 { name="textstem"; version="0.1.4"; sha256="1pbhi5ia3w16vsix2x3if51zd2v9bcv0j4lj9hfikgq1yz9zxmw2"; depends=[dplyr hunspell koRpus koRpus_lang_en lexicon quanteda SnowballC stringi textclean textshape]; }; - textutils = derive2 { name="textutils"; version="0.3-2"; sha256="1911450yhq1f97arv96lxljjpa41kikx8gv71x39zbpwkgz2xsxh"; depends=[]; }; - tf = derive2 { name="tf"; version="0.3.2"; sha256="1w1ifnxfh963rqbx7kljsf3s0dc1nj0kgc9dkwn8jh2j1qi69bcn"; depends=[checkmate mgcv mvtnorm pracma purrr rlang vctrs zoo]; }; + textutils = derive2 { name="textutils"; version="0.4-1"; sha256="0li2arblc1542sadk7sjdg0avjwavvvy2rrvlh28wznj8vxc3xy3"; depends=[]; }; + tf = derive2 { name="tf"; version="0.3.4"; sha256="03hiqhlijf86sh4pgqr20nr5135vnf4ryfhzj9pgym9nbamwpa44"; depends=[checkmate mgcv mvtnorm pracma purrr rlang vctrs zoo]; }; tfCox = derive2 { name="tfCox"; version="0.1.0"; sha256="06mbiz1jwp8mv5dbwyvdvy1wpp8s3xp9hhsm94vrbvjaxg680g28"; depends=[Rcpp survival]; }; tfNeuralODE = derive2 { name="tfNeuralODE"; version="0.1.0"; sha256="1wspn1i5dvxly9ggbi07npv314krvb7472kx3crqalcxgjjfzfjl"; depends=[deSolve keras reticulate tensorflow]; }; tfaddons = derive2 { name="tfaddons"; version="0.10.0"; sha256="16adig97qmafval6i29pqdinsgbwjz2isajxdx1xvbf1mrawkmz0"; depends=[keras purrr reticulate rstudioapi tensorflow]; }; @@ -19314,7 +19618,7 @@ in with self; { tfdeploy = derive2 { name="tfdeploy"; version="0.6.1"; sha256="1vbxyvmzaafbwp1pmvzn16zyl4nz85787m79gn7iazh9zw9f7j34"; depends=[httpuv httr jsonlite magrittr reticulate swagger tensorflow]; }; tfer = derive2 { name="tfer"; version="1.3"; sha256="1a5i9jccj39n61ixx8q2qq9ismr43jybp0vlvy6jda99r92zdhhl"; depends=[]; }; tfestimators = derive2 { name="tfestimators"; version="1.9.2"; sha256="1gwj2xal5an0m9c2x1rxzsg07hgzjyxr4m08sd3salgyc2h3bi5g"; depends=[forge magrittr progress purrr reticulate rlang tensorflow tfruns tibble tidyr tidyselect]; }; - tfevents = derive2 { name="tfevents"; version="0.0.2"; sha256="177dplz6chrpxaqgh84134p5xvxxzly3wprwvcbhsjgxkzyqya8x"; depends=[blob cli digest ellipsis fs png Rcpp rlang vctrs withr zeallot]; }; + tfevents = derive2 { name="tfevents"; version="0.0.3"; sha256="1a8dgmi71smaqc71r7pjpdgks6z7s0wkz5nll951846sxkhxpg5v"; depends=[blob cli digest ellipsis fs png Rcpp rlang vctrs withr zeallot]; }; tfhub = derive2 { name="tfhub"; version="0.8.1"; sha256="19wbmdh31wsqmxwsm7ks3j5n60my49b3safp587cpwf0y70rihsi"; depends=[magrittr reticulate rstudioapi tensorflow vctrs]; }; tfio = derive2 { name="tfio"; version="0.4.1"; sha256="089vh0k12z0ymk4v585hfnl5yqp28rgzqgy633m874h6fqzhhxvp"; depends=[forge magrittr reticulate tensorflow tfdatasets]; }; tfplot = derive2 { name="tfplot"; version="2021.6-1"; sha256="0w0m9d2lvjl96vxwvks2v086y4gqiv2n0d50j2yrngys9p2nrlxc"; depends=[tframe]; }; @@ -19322,12 +19626,12 @@ in with self; { tframe = derive2 { name="tframe"; version="2015.12-1.1"; sha256="1yff22jzh1mp73zbz2mav6z8m42lylfjhb8dgxj4337fv3if3i13"; depends=[]; }; tframePlus = derive2 { name="tframePlus"; version="2024.2-1"; sha256="02c4fjgwywqi6s7g42rpzz070j28cjr4bs94298jv2x14zkwf4v8"; depends=[tframe timeSeries]; }; tfrmt = derive2 { name="tfrmt"; version="0.1.1"; sha256="1jz5xvmfi53mki0d0jx5bvlmmz2y6pmmasij4c9jgdpd9p57ryaf"; depends=[dplyr forcats ggplot2 glue gt jsonlite magrittr purrr rlang stringi stringr tibble tidyr tidyselect]; }; - tfrmtbuilder = derive2 { name="tfrmtbuilder"; version="0.0.5"; sha256="0zm2z607vi8chrqcfm4yx3xic6cq7ws0r3fqy6p66nyn3h7zndbx"; depends=[bslib dplyr DT fontawesome forcats gt purrr rio rlang shiny shinyAce shinycssloaders shinyFeedback shinyjs shinyWidgets sortable stringr tfrmt tidyr webshot2]; }; - tfruns = derive2 { name="tfruns"; version="1.5.2"; sha256="1iw80r31jddngby48wf53ayjhvvx77kas4hvvp7j65klvx337aqw"; depends=[base64enc config jsonlite magrittr reticulate rlang rstudioapi tidyselect whisker yaml]; }; + tfrmtbuilder = derive2 { name="tfrmtbuilder"; version="0.0.6"; sha256="0c5x0sva90q7ghfz64fjy4w83a549ism6hwl6a1j4j81l9w6p8f7"; depends=[bslib dplyr DT fontawesome forcats gt purrr rio rlang shiny shinyAce shinycssloaders shinyFeedback shinyjs shinyWidgets sortable stringr tfrmt tidyr webshot2]; }; + tfruns = derive2 { name="tfruns"; version="1.5.3"; sha256="0z0cbw4fr374s82ds0vdxmd37bbd6yrixwgby26qzkjr7dvzsbmy"; depends=[base64enc config jsonlite magrittr reticulate rlang rstudioapi tidyselect whisker yaml]; }; tgamtheme = derive2 { name="tgamtheme"; version="0.1.0"; sha256="1igv6vl3vqqx8pbvj5qr21cjphpizq3b5sjss359bhw2gy747npl"; depends=[ggplot2]; }; tgcd = derive2 { name="tgcd"; version="2.7"; sha256="0ncd642yamwg4xgwrzavfral0gwkk0zlffw4w4ixw0yn0f7d7vv9"; depends=[]; }; tggd = derive2 { name="tggd"; version="0.1.1"; sha256="1izar1b3w148vp2r8gv3vpwfndib8ilxcjxgbfzbxn7q5mr73mwa"; depends=[gsl]; }; - tglkmeans = derive2 { name="tglkmeans"; version="0.5.4"; sha256="1plg03k9r4sp8ck5qcj8shblr8378bynyyc7yqwcqv856vkl9icd"; depends=[cli doFuture dplyr future ggplot2 magrittr Matrix plyr purrr Rcpp RcppParallel tgstat tibble]; }; + tglkmeans = derive2 { name="tglkmeans"; version="0.5.5"; sha256="0hdnxgkxpgb8jm9aygv3wlhd42blm5nz906vlpl72blgcyc77hhh"; depends=[cli doFuture doRNG dplyr future ggplot2 magrittr Matrix plyr purrr Rcpp RcppParallel tgstat tibble]; }; tgp = derive2 { name="tgp"; version="2.4-22"; sha256="0gpndjq2xiic6fb5187f4hgrqj3477pd83caajnw3yy9wan4vly6"; depends=[maptree]; }; tgram = derive2 { name="tgram"; version="0.2-3"; sha256="0vlnry8drq3fqfy8dk50pcwcx9dj657kx6s19fs2b6acigkr4g7w"; depends=[zoo]; }; tgstat = derive2 { name="tgstat"; version="2.3.27"; sha256="0scljimskda5hinkb4y5va9c9qlqwf6k6zrm20bjk133710qsscb"; depends=[]; }; @@ -19342,7 +19646,6 @@ in with self; { themis = derive2 { name="themis"; version="1.0.2"; sha256="1qg1kxax866s84rgjlp2c153793j45lrvay8bqfjnc2cj04h2dgi"; depends=[dplyr generics glue gower hardhat lifecycle purrr RANN recipes rlang ROSE tibble vctrs withr]; }; thermocouple = derive2 { name="thermocouple"; version="1.0.2"; sha256="1rlvhw3i83iq1vibli84gj67d98whvgkxafwpmisva1m4s1bmij4"; depends=[]; }; thestats = derive2 { name="thestats"; version="0.1.0"; sha256="15y6ibw7i4nrm8990yirqf64gl1x4l7lj3ajk19vi6ccxw82x2gl"; depends=[dplyr]; }; - thewitcher = derive2 { name="thewitcher"; version="1.0.1"; sha256="140f0insb5gqrfdaq5cnzj6bl0akbif57jnyy7ai3rb2rwy9n2nv"; depends=[dplyr ggplot2 gridExtra magrittr MASS readr tidyverse usethis]; }; thgenetics = derive2 { name="thgenetics"; version="0.4-2"; sha256="1314gry3xs9v4jy13g08q16qy4ax3s0bc7d74gi0wbpkgdrk3lql"; depends=[]; }; thief = derive2 { name="thief"; version="0.3"; sha256="12ymkkisg5p0g1gmvlczhp4dc7mirjg55fqqmz2d90673vlg6rfq"; depends=[forecast ggplot2 hts]; }; thinkr = derive2 { name="thinkr"; version="0.16"; sha256="104n4g70fk209b721qchrbv95dwxzq6vvhz36asdk40kzzacdzp2"; depends=[assertthat cli devtools dplyr ggplot2 lazyeval lubridate magrittr officer rvg stringi stringr tidyr withr]; }; @@ -19358,7 +19661,7 @@ in with self; { threshr = derive2 { name="threshr"; version="1.0.5"; sha256="0gr5vnb3bc6b2blpa63mvyhgyjkplq8x0p27h7czjnwinzwsrwrg"; depends=[revdbayes rust]; }; thriftr = derive2 { name="thriftr"; version="1.1.7"; sha256="0qx96nd9wdmxgvlvv43q51qrqpmb98vz6hmrhlq3hp91w3g20p5a"; depends=[R6 rly stringi]; }; thunder = derive2 { name="thunder"; version="1.1.3"; sha256="0gn4kkpagh5blhp1zpgilkpa8mwfz8w05qlri5ca4wwcy7xkmn41"; depends=[aiRthermo curl dplyr httr Rcpp]; }; - thurstonianIRT = derive2 { name="thurstonianIRT"; version="0.12.4"; sha256="1gvijkxiy4zwg5hxg4qhy3dgcck2gm4nh6bjacxsz5yvai3fagsa"; depends=[BH dplyr lavaan magrittr mvtnorm Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders tibble tidyr]; }; + thurstonianIRT = derive2 { name="thurstonianIRT"; version="0.12.5"; sha256="0rdiv9pdxxp36ggxlfs1g6jcv1f259ky2cpxb6kg21s4xfllrah2"; depends=[BH dplyr lavaan magrittr mvtnorm Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders tibble tidyr]; }; tibble = derive2 { name="tibble"; version="3.2.1"; sha256="0c916wl19wbhncv05hjzs2vmvvbcxlswjl6i232ygmkzal62v9v5"; depends=[fansi lifecycle magrittr pillar pkgconfig rlang vctrs]; }; tibbletime = derive2 { name="tibbletime"; version="0.1.8"; sha256="18a63vipcw95yk37r490a3a4xag59v7475bch2dizq7nqhfc5wfn"; depends=[assertthat dplyr glue hms lifecycle lubridate pillar purrr Rcpp rlang tibble vctrs zoo]; }; tibblify = derive2 { name="tibblify"; version="0.3.1"; sha256="165ygq6wf35siiml6dsm4hxqg5lndqhwh82cdwyfwnl829nbz9a7"; depends=[cli lifecycle purrr rlang tibble tidyselect vctrs withr]; }; @@ -19366,21 +19669,21 @@ in with self; { tictoc = derive2 { name="tictoc"; version="1.2.1"; sha256="0cw8r1gn4p2v1l3d80brk9sfr9nyckyyym5nr9xq3d74l74vgkcg"; depends=[]; }; tidier = derive2 { name="tidier"; version="0.2.0"; sha256="0n6gzanssni5l5wmm5iqql1k2wfxg7dzq1rk3dhar7rpyxghdnf1"; depends=[checkmate dbplyr dplyr furrr magrittr rlang slider tidyr]; }; tidyAML = derive2 { name="tidyAML"; version="0.0.5"; sha256="0vv6nfw113h1pph06h9smm31b1j2zz3z5a9dalc6ldgs7pjb16gi"; depends=[broom dplyr forcats ggplot2 magrittr parsnip purrr rlang rsample tidyr workflows workflowsets]; }; - tidyBdE = derive2 { name="tidyBdE"; version="0.3.5"; sha256="0mzl8bckfgz7qfdnb1xa0b6i45jx881cf94cf6kw3m4dmixh056k"; depends=[dplyr ggplot2 readr scales tibble tidyr]; }; + tidyBdE = derive2 { name="tidyBdE"; version="0.3.6"; sha256="0mvjv9qfb93mq8bn2mc8sphyppqw9pn0ia4jb5wvgakwbqs5gf3i"; depends=[dplyr ggplot2 readr scales tibble tidyr]; }; tidyCDISC = derive2 { name="tidyCDISC"; version="0.2.1"; sha256="06pri456bqmvnfna7g092ccd7lqr3bc9gdnw67d7nfz91qwnsny6"; depends=[cicerone config dplyr DT GGally ggcorrplot ggplot2 glue golem gt haven IDEAFilter plotly purrr rlang rmarkdown shiny shinyjs shinyWidgets sjlabelled stringr survival tidyr timevis tippy]; }; tidyCpp = derive2 { name="tidyCpp"; version="0.0.7"; sha256="0h2h0r8v1fp3sl4caf3nkhf4f75zncadkz9axzwncig7a7qvb00z"; depends=[]; }; tidyDenovix = derive2 { name="tidyDenovix"; version="2.1.0"; sha256="0lm5yr86l7vnx11fn7abydsc6jpvj4jyzzk8q9jwhi4sjy8jp0wl"; depends=[data_table dplyr janitor readxl tibble tidyr]; }; - tidyEdSurvey = derive2 { name="tidyEdSurvey"; version="0.1.2"; sha256="0m7nf7kzniwqkissfgmmdda75aiww6r5ih17h1xswr8xh7sb4q4y"; depends=[cli dplyr EdSurvey ggplot2 lifecycle rlang tidyselect]; }; + tidyEdSurvey = derive2 { name="tidyEdSurvey"; version="0.1.3"; sha256="0vimgaq09dbz78i68ks5p3wiiahl59grdcvbg4bgdq3147pbmd3k"; depends=[cli dplyr EdSurvey ggplot2 lifecycle rlang tidyselect]; }; tidyEmoji = derive2 { name="tidyEmoji"; version="0.1.1"; sha256="0gy178kdj5c2mdxmczhbh3wai8lk9d2fk6c8qn8fpz3mc97zlx7p"; depends=[dplyr emoji purrr stringr tibble tidyr]; }; tidyHeatmap = derive2 { name="tidyHeatmap"; version="1.8.1"; sha256="19gpp8p3ms60qzny26vx8h7x4zl495ynrfrvf1nndhm2njbx6i4m"; depends=[circlize ComplexHeatmap dendextend dplyr lifecycle magrittr patchwork purrr RColorBrewer rlang tibble tidyr viridis]; }; tidyLPA = derive2 { name="tidyLPA"; version="1.1.0"; sha256="1lyd8cx90j49bm65330i57jyimiid75c2pvnzk7dcp6mbmglvimz"; depends=[dplyr ggplot2 gtable mclust mix MplusAutomation tibble]; }; tidyMC = derive2 { name="tidyMC"; version="1.0.0"; sha256="0mf2xxckxxvcgw1381yscmzppwgmmn44zpfyw6glkbw6963z542k"; depends=[checkmate dplyr furrr future ggplot2 hms kableExtra magrittr purrr rlang stringr tibble tidyr]; }; tidyREDCap = derive2 { name="tidyREDCap"; version="1.1.1"; sha256="1k06bnxvq5k4j005h269n5ivxn1vr2i8nkdg048q8m7vmpanwz4m"; depends=[cli dplyr janitor labelVector magrittr purrr REDCapR rlang stringr tibble tidyr tidyselect vctrs]; }; tidyRSS = derive2 { name="tidyRSS"; version="2.0.7"; sha256="1v9c4cjh2apxsk5s1qyqg5pb02l83qhlg6bj684zvdmc4fqac6zw"; depends=[anytime dplyr glue httr jsonlite magrittr purrr rlang tibble tidyselect vctrs xml2]; }; - tidySEM = derive2 { name="tidySEM"; version="0.2.6"; sha256="0vsk4z1mpzmyg618c5sqmblv8c8pzhwbrbxwdq4cpg7sl6agbhb0"; depends=[bain blavaan car dbscan future_apply ggplot2 gtable igraph lavaan Matrix MplusAutomation nonnest2 OpenMx progressr psych RANN]; }; + tidySEM = derive2 { name="tidySEM"; version="0.2.7"; sha256="1da0hpapns93a1znlq8gh1nmjczczy4sg4c14kikkxhar1wq4lrk"; depends=[bain blavaan car dbscan future_apply ggplot2 gtable igraph lavaan Matrix MplusAutomation nonnest2 OpenMx progressr psych RANN]; }; tidyUSDA = derive2 { name="tidyUSDA"; version="0.4.1"; sha256="1llqz8xs6zkg0vqz6hks6jghxsfyp35k3n4882qg3w6lr080ir8b"; depends=[checkmate crayon dplyr fuzzyjoin ggplot2 httr jsonlite magrittr sf tigris]; }; tidybayes = derive2 { name="tidybayes"; version="3.0.6"; sha256="146vmb3sf3ld6n20bbd8lj972g6xcclmisqsmnjq99jmg3hl8q3h"; depends=[arrayhelpers cli coda dplyr ggdist ggplot2 magrittr posterior rlang tibble tidyr tidyselect vctrs withr]; }; - tidybins = derive2 { name="tidybins"; version="0.1.0"; sha256="1kwwz0y1anlf1l8yl80xyiggdi8alsh0drb1529rijfk2jxlljg9"; depends=[badger ClusterR dplyr framecleaner ggplot2 janitor lubridate magrittr OneR purrr rlang rlist scales strex stringr tibble tidyselect xgboost]; }; + tidybins = derive2 { name="tidybins"; version="0.1.1"; sha256="11213qv79qlqlkxh10y3vhidy120f9gyfwj4xqbr6w3wqa5cjg60"; depends=[autostats badger ClusterR dplyr framecleaner ggplot2 janitor lubridate magrittr OneR purrr rlang rlist scales strex stringr tibble tidyselect xgboost]; }; tidyboot = derive2 { name="tidyboot"; version="0.1.1"; sha256="0nss1ci763g9p5f33g163ppamx72axc8xhrils0cql3ka8439pmn"; depends=[dplyr modelr purrr rlang tidyr]; }; tidycat = derive2 { name="tidycat"; version="0.1.2"; sha256="1c8ib5zcz2xk7yrzh4j5q4ccv6lnw58sh2ggqn04k2wp0gcj2zcs"; depends=[dplyr forcats magrittr stringr tibble tidyr]; }; tidycensus = derive2 { name="tidycensus"; version="1.6.3"; sha256="160swqjrcfkqrjpgvyxqqpvm2xnbb1yr0jb89w9mva4mmlnncfj4"; depends=[crayon dplyr httr jsonlite purrr rappdirs readr rlang rvest sf stringr tidyr tidyselect tigris units xml2]; }; @@ -19397,10 +19700,10 @@ in with self; { tidyedgar = derive2 { name="tidyedgar"; version="1.0.1"; sha256="1xg56slll4pjqfxi23jpfg4n68b5a14jk6jibc0vcmr05fvd04lr"; depends=[dplyr httr jsonlite tidyr]; }; tidyestimate = derive2 { name="tidyestimate"; version="1.1.1"; sha256="0jsi14az84np5wr5zrqgnvy3rn9sv7v8yf7k34iacj35gdw7yx6c"; depends=[dplyr ggplot2 ggrepel glue rlang]; }; tidyfast = derive2 { name="tidyfast"; version="0.4.0"; sha256="0218avgj27mn47vdk5yf34ckkmywdz2mzarvlhxn5l0x7pf8zn68"; depends=[cpp11 data_table]; }; - tidyfinance = derive2 { name="tidyfinance"; version="0.1.0"; sha256="1b4is9czzyd4kjj9zh279mlp2lax9l9bzymhl3kp2bhc8l9i90kl"; depends=[dplyr lifecycle lubridate purrr rlang tibble tidyr]; }; + tidyfinance = derive2 { name="tidyfinance"; version="0.2.0"; sha256="1vch27q03gg447hkndl55fgmwxl0ggq524zbrkslj1cf9dzs9r20"; depends=[dplyr lifecycle lubridate purrr rlang tibble tidyr]; }; tidyfit = derive2 { name="tidyfit"; version="0.7.1"; sha256="117x0cmrs0hhp0k4c2c6dx80jjvar7bfgipjzx5d977l4343fhx7"; depends=[broom crayon dials dplyr furrr generics magrittr MASS progressr purrr rlang rsample tibble tidyr vctrs yardstick]; }; tidyformula = derive2 { name="tidyformula"; version="0.1.0"; sha256="1sz5v8l1gpci1jzs87qgxr95nr881rz5lidlfwgfi8963kgvigvg"; depends=[dplyr purrr rlang]; }; - tidyfst = derive2 { name="tidyfst"; version="1.7.7"; sha256="1vmlbsnj3kq2gl71kv3xz87cdwkkkmn6lnl4j8rf65njsjh1r9ra"; depends=[data_table fst stringr]; }; + tidyfst = derive2 { name="tidyfst"; version="1.7.9"; sha256="114wdgrcwkl5mpjxdilp51xc9qn4sa3qj5fclyz84s305hiaba6d"; depends=[data_table fst stringr]; }; tidyft = derive2 { name="tidyft"; version="0.5.7"; sha256="00qcsr2sx8fwyil384vgppx0q72qjrkj7h5nv4mdxdi8f9h6ph2r"; depends=[data_table fst stringr]; }; tidygam = derive2 { name="tidygam"; version="0.2.0"; sha256="1m2lzmbvxflnyqf7m0waq0svgwhqh1snc2zn3n8wjh70lkzclpkx"; depends=[cli dplyr ggplot2 glue insight magrittr mgcv rlang stringr tibble tidyr tidyselect]; }; tidygapminder = derive2 { name="tidygapminder"; version="0.1.1"; sha256="1m6bynwnw1msrzvdmy12w3ympinqpd8j3may3rwmg9941nndjv2d"; depends=[data_table dplyr readxl tidyr]; }; @@ -19413,10 +19716,10 @@ in with self; { tidyhydat = derive2 { name="tidyhydat"; version="0.6.1"; sha256="0rcb3q17ckp7l7xrjf3r32dlnxm6ykwlk20w5h7amnc2vimjnir9"; depends=[cli crayon DBI dbplyr dplyr httr lubridate rappdirs readr rlang RSQLite tidyr]; }; tidyindex = derive2 { name="tidyindex"; version="0.1.0"; sha256="1ziiycfldcy94bsl65mf9c6iav7xn2wamncdkz41d76bsxrjzbnx"; depends=[cli dplyr generics ggplot2 glue purrr rlang tidyr tidyselect tsibble vctrs]; }; tidyjson = derive2 { name="tidyjson"; version="0.3.2"; sha256="0znm590kpvkh8zl08saasnsi77x459640mqv0pq15gmsjnycldp6"; depends=[assertthat dplyr jsonlite magrittr purrr rlang tibble tidyr]; }; - tidylda = derive2 { name="tidylda"; version="0.0.4"; sha256="0hc2la5fsl0z1svxzkn4ipr1ylabmhmhgdc0jgzafkwrz07dpkn2"; depends=[dplyr generics gtools Matrix mvrsquared Rcpp RcppArmadillo RcppProgress RcppThread rlang stringr tibble tidyr tidytext]; }; + tidylda = derive2 { name="tidylda"; version="0.0.5"; sha256="1i5nhb49g5sw5dwha7ia61yp5nnqi9bln35ij0smhrrfjwxz5djp"; depends=[dplyr generics gtools Matrix mvrsquared Rcpp RcppArmadillo RcppProgress RcppThread rlang stringr tibble tidyr tidytext]; }; tidylo = derive2 { name="tidylo"; version="0.2.0"; sha256="07xnbycwrqg3cmbxx76drbjd0mx4s23vf3kihlc9rj4ajjx48z8r"; depends=[dplyr rlang]; }; - tidylog = derive2 { name="tidylog"; version="1.0.2"; sha256="076am30ayc16wm3bilznxqzd5806yi7dx5m9yv4w7q90i7imsqk7"; depends=[clisymbols dplyr glue tidyr]; }; - tidymodels = derive2 { name="tidymodels"; version="1.1.1"; sha256="1ilmxxmbi9czxwv8n6xajaww9047h34i9vy2dmglj7nqply8wzl0"; depends=[broom cli conflicted dials dplyr ggplot2 hardhat infer modeldata parsnip purrr recipes rlang rsample rstudioapi tibble tidyr tune workflows workflowsets yardstick]; }; + tidylog = derive2 { name="tidylog"; version="1.1.0"; sha256="06bp0avpksh7q3kd2g8l22fz8kg9x4s1hbi21b7l44kv2pv5s9vi"; depends=[clisymbols dplyr glue rlang tidyr]; }; + tidymodels = derive2 { name="tidymodels"; version="1.2.0"; sha256="04lj7mjg9q72x19d9j4wqarp38w64b0klq8phsall82p0x2bg9pc"; depends=[broom cli conflicted dials dplyr ggplot2 hardhat infer modeldata parsnip purrr recipes rlang rsample rstudioapi tibble tidyr tune workflows workflowsets yardstick]; }; tidymv = derive2 { name="tidymv"; version="3.4.2"; sha256="0jl6lhi47nz8a7crlqmrqm0cnj4gx3l06gxjvdw8p52y706a478a"; depends=[dplyr ggplot2 lifecycle magrittr mgcv rlang tibble tidyr]; }; tidync = derive2 { name="tidync"; version="0.3.0"; sha256="0w8i8h3rr7mjxbc5zasw6zi9v95z51635pdl91ip4awgkrkyn9f3"; depends=[dplyr forcats magrittr ncdf4 ncmeta purrr rlang RNetCDF tibble tidyr]; }; tidypaleo = derive2 { name="tidypaleo"; version="0.1.3"; sha256="18z3w068q011a8xw75qm7wd6hqc358q38a5hd2lmm29p65c8mjxj"; depends=[digest dplyr ggplot2 ggstance purrr rioja rlang scales stringr styler tibble tidyr tidyselect vctrs withr]; }; @@ -19427,7 +19730,6 @@ in with self; { tidypredict = derive2 { name="tidypredict"; version="0.5"; sha256="1h05gm6fwjh6v9qqi9jbislf008h7d50k003qymb0x9gz6p75qgy"; depends=[dplyr generics knitr purrr rlang tibble tidyr]; }; tidyquant = derive2 { name="tidyquant"; version="1.0.7"; sha256="1pb7d6x2b8kf16aah1n9kq4il4kp54lcvzd27r5viwdbgvk1sr4h"; depends=[alphavantager curl dplyr ggplot2 httr jsonlite lazyeval lubridate magrittr PerformanceAnalytics purrr Quandl quantmod readr readxl riingo rlang stringr tibble tidyr tidyselect tidyverse timeDate timetk TTR xts]; }; tidyquery = derive2 { name="tidyquery"; version="0.2.4"; sha256="0ld48yqnfhn8j9ikadic55qwjxacp1f8bzihrfw0sh1r3kvl8yib"; depends=[dplyr lubridate queryparser rlang stringr]; }; - tidyqwi = derive2 { name="tidyqwi"; version="0.1.2"; sha256="16f0c2mdx6aiji6i7237kpc9awqdgrg6rhs408w6ag28dhxpgwlv"; depends=[dplyr furrr future httr jsonlite labelled magrittr purrr stringr tidyr xml2]; }; tidyr = derive2 { name="tidyr"; version="1.3.1"; sha256="0pc3ad9k36lk3c5qbgx4blhs8aihqyysfxljyirgahsmrdhw4878"; depends=[cli cpp11 dplyr glue lifecycle magrittr purrr rlang stringr tibble tidyselect vctrs]; }; tidyrates = derive2 { name="tidyrates"; version="0.0.1"; sha256="00j4s13q8vvh5m28rspwm2kf59gcbhmaif31746p2g8499535di8"; depends=[checkmate dplyr epitools forcats magrittr purrr rlang tibble tidyr]; }; tidyrgee = derive2 { name="tidyrgee"; version="0.1.0"; sha256="0sdjbl4ivjrppg215j1wpcyjlbhn0g7z9cpljvqkwq3mb1abhdfd"; depends=[assertthat crayon dplyr glue lubridate purrr readr reticulate rgee rlang sf stringr tidyr]; }; @@ -19437,22 +19739,22 @@ in with self; { tidyseurat = derive2 { name="tidyseurat"; version="0.8.0"; sha256="0xm1vls01d6pcsh824w6li8wp9nf5xrxm9ranrx673vjkjrdwilf"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr Matrix pillar plotly purrr rlang Seurat SeuratObject stringr tibble tidyr tidyselect ttservice vctrs]; }; tidysmd = derive2 { name="tidysmd"; version="0.2.0"; sha256="1sbn4x59wdshc0xhxycvkf6ssm3w3pgfl64r8s3m77piara2i0dm"; depends=[dplyr purrr rlang smd tidyr tidyselect]; }; tidysq = derive2 { name="tidysq"; version="1.1.3"; sha256="1k4ws5zymrc93rlh8118xxfgjdwr7g99cyhzjp34abcsip1c3g21"; depends=[checkmate cli crayon dplyr pillar Rcpp testthat tibble vctrs]; }; - tidystats = derive2 { name="tidystats"; version="0.6.0"; sha256="1hlybkzx940nrl9pgvcdvvz95kn4pn6y8dpamj91fjx41blyjcsp"; depends=[checkmate dplyr jsonlite purrr readr stringr tibble tidyr]; }; + tidystats = derive2 { name="tidystats"; version="0.6.1"; sha256="1cq4xkmjk2q9fds8m21l4dhmr9jivk9n1g199kn3jprjwfydhy96"; depends=[checkmate dplyr jsonlite purrr readr stringr tibble tidyr]; }; tidystopwords = derive2 { name="tidystopwords"; version="0.9.1"; sha256="00kak679ddwdgvqmjs5312w9k8sapc1n7dxipgqqfjqw2xy0h1jh"; depends=[dplyr]; }; tidystringdist = derive2 { name="tidystringdist"; version="0.1.4"; sha256="1srxh5gyspcghzvnmpyq36ky608ipf71vv0s1jg01mgf2i5pdkf4"; depends=[attempt rlang stringdist tibble]; }; tidysynth = derive2 { name="tidysynth"; version="0.2.0"; sha256="1arvjv3w6my47xwrzxrnpb2npskhqb9xmqhszgrxcqa55s1x6p15"; depends=[dplyr forcats ggplot2 kernlab magrittr optimx rgenoud rlang tibble tidyr]; }; tidytable = derive2 { name="tidytable"; version="0.11.0"; sha256="09xcjh9vpkz6bcv8rg8g25rpirvsjvbl282ys6y1r1npgb3mrdgm"; depends=[data_table glue lifecycle magrittr pillar rlang tidyselect vctrs]; }; - tidyterra = derive2 { name="tidyterra"; version="0.5.2"; sha256="1bi7xy2c8iqfn22bqd8gf5cip7p8axj0fh3fqswbvpxj3z4j7161"; depends=[cli data_table dplyr ggplot2 magrittr rlang scales sf terra tibble tidyr]; }; - tidytext = derive2 { name="tidytext"; version="0.4.1"; sha256="05f8209qx1rvddnkl0h05yig09xahs8lqgq9w5dvdiwarji50rsj"; depends=[cli dplyr generics janeaustenr lifecycle Matrix purrr rlang stringr tibble tokenizers vctrs]; }; + tidyterra = derive2 { name="tidyterra"; version="0.6.1"; sha256="1viqpi1gzgy6y2qhh7qbfp1yjvb9ycnz9a9am7jypmdqkl13g78m"; depends=[cli data_table dplyr ggplot2 magrittr rlang scales sf terra tibble tidyr]; }; + tidytext = derive2 { name="tidytext"; version="0.4.2"; sha256="0m1dxlrmkany4pjbr2p2m9hzn59gldmznyvs6dcb3zdr5861ix0c"; depends=[cli dplyr generics janeaustenr lifecycle Matrix purrr rlang stringr tibble tokenizers vctrs]; }; tidytidbits = derive2 { name="tidytidbits"; version="0.3.2"; sha256="1zbm165bimjag7azhy77zlzqilygybqxz35q4r3d7hi7p6m96w78"; depends=[dplyr extrafont forcats magrittr purrr rlang stringr tibble tidyr tidyselect]; }; - tidytlg = derive2 { name="tidytlg"; version="0.1.4"; sha256="0di871am8zplavhkh2kjqazc3nv3cn5dzzff0sgj4hxwhfla1f12"; depends=[assertthat cellranger crayon dplyr forcats ggplot2 glue huxtable magrittr png purrr readxl rlang rstudioapi stringr tibble tidyr tidyselect usethis]; }; + tidytlg = derive2 { name="tidytlg"; version="0.1.5"; sha256="0w4ah32b82b14y6nxw8l5z06mxx9cxipqmjnmifxxb86qjhqpp9f"; depends=[assertthat cellranger cli crayon dplyr forcats ggplot2 glue huxtable magrittr png purrr readxl rlang rstudioapi stringr tibble tidyr]; }; tidytransit = derive2 { name="tidytransit"; version="1.6.1"; sha256="0n5iy7cpj94r396rf6rzx2n258836rjf7906hrdj58rgc28qhacm"; depends=[data_table digest dplyr geodist gtfsio hms rlang sf]; }; tidytreatment = derive2 { name="tidytreatment"; version="0.2.2"; sha256="04z3afharkqyjk5kk097kpqlrmvq5220bsdlzmbzwl5k56vgxgxx"; depends=[dplyr purrr readr rlang tidybayes tidyr]; }; tidytree = derive2 { name="tidytree"; version="0.4.6"; sha256="14i2v6ryqw4cd74n8kz4qwwx730wzx4f0rssg5vgm0vjfsx0kafv"; depends=[ape cli dplyr lazyeval magrittr pillar rlang tibble tidyr tidyselect yulab_utils]; }; tidytuesdayR = derive2 { name="tidytuesdayR"; version="1.0.3"; sha256="0n6pl2n3gv3f1idqfgb5w2pr71za551kgc4whxda4dwzl5ylkc0v"; depends=[httr jsonlite lubridate magrittr purrr readr readxl rstudioapi rvest usethis xml2]; }; tidyverse = derive2 { name="tidyverse"; version="2.0.0"; sha256="1r980y6d4a5brvxwdx41qzi8f3fck36c5l89sd3k4csna09jsg1x"; depends=[broom cli conflicted dbplyr dplyr dtplyr forcats ggplot2 googledrive googlesheets4 haven hms httr jsonlite lubridate magrittr modelr pillar purrr ragg readr readxl reprex rlang rstudioapi rvest stringr tibble tidyr xml2]; }; tidyvpc = derive2 { name="tidyvpc"; version="1.5.1"; sha256="1i7dsmji1kjjs7lncpdxg5kpy0r4rc9ylb197fnbgkkz8yxjb8q3"; depends=[classInt cluster data_table egg fastDummies ggplot2 magrittr mgcv quantreg rlang]; }; - tidywikidatar = derive2 { name="tidywikidatar"; version="0.5.7"; sha256="0lpdg4iaqis3hnklf3qm0xjan0pdmpkwgc4zm6hl4b5m1zr4s2fx"; depends=[DBI dplyr fs glue jsonlite magrittr pool progress purrr rlang RSQLite stringr tibble tidyr usethis vctrs WikidataQueryServiceR WikidataR WikipediR]; }; + tidywikidatar = derive2 { name="tidywikidatar"; version="0.5.8"; sha256="1f6651nh98assi6wr6k1qp55bspqln83arz6di1fx8p7mlkrh8li"; depends=[cli DBI dplyr fs glue jsonlite magrittr pool progress purrr rlang RSQLite stringr tibble tidyr vctrs WikidataQueryServiceR WikidataR WikipediR]; }; tidyxl = derive2 { name="tidyxl"; version="1.0.10"; sha256="1y8bbll3mhxb2drdraymblzw8gjxym2lrj90fg2z75rn00lnwf8f"; depends=[piton Rcpp]; }; tiff = derive2 { name="tiff"; version="0.1-12"; sha256="0p41irri0nxg9mm06g8jp5zqssv80g5zg0iifrr7ancjkxqww46z"; depends=[]; }; tigerhitteR = derive2 { name="tigerhitteR"; version="1.1.0"; sha256="0inyi12lf8bn7nbklf2rjixk6wrgrjcp8njv7knai4dgvv7v0rfa"; depends=[Hmisc magrittr openxlsx zoo]; }; @@ -19465,7 +19767,7 @@ in with self; { tigris = derive2 { name="tigris"; version="2.1"; sha256="15zxsqxwns9vm8ymk2nadxjh3h91pxr69206sqakhch3w1nfssvr"; depends=[dplyr httr magrittr rappdirs sf stringr uuid]; }; tiktokadsR = derive2 { name="tiktokadsR"; version="0.1.0"; sha256="17x6nxp88iji376qhvvkgxyfcbxz9bvfgv9kmhiznlhq64srdjfs"; depends=[jsonlite]; }; tikzDevice = derive2 { name="tikzDevice"; version="0.12.6"; sha256="1b04a3hmfx0r5iw6836cb9pvqspijb2dz17vc40n9jwsr9ij3nq4"; depends=[filehash png]; }; - tiledb = derive2 { name="tiledb"; version="0.25.0"; sha256="0azczjh9imcjc6rq7l0lcp0mvab0jmmq6y8i5xvyndf5q79mn002"; depends=[nanoarrow nanotime Rcpp RcppInt64 spdl]; }; + tiledb = derive2 { name="tiledb"; version="0.28.0"; sha256="1m4larx3d6si1283hza8pvf0z49rb7h2v3dv5bn9mm6cf82xm5fx"; depends=[nanoarrow nanotime Rcpp RcppInt64 spdl]; }; tilegramsR = derive2 { name="tilegramsR"; version="0.2.0"; sha256="11cnyvlghg8z7lr9ahzsjpyjrqnxqs77wdcydqvavrsqj745xvi2"; depends=[sf sp]; }; tilemaps = derive2 { name="tilemaps"; version="0.2.0"; sha256="06pwwlndb7nvw2b0h0fak3vnpbi11mxsby43qm9ng3k3sqwrqjz2"; depends=[clue ggplot2 igraph lwgeom sf smoothr]; }; tiler = derive2 { name="tiler"; version="0.3.1"; sha256="09xxfkbgjd9x27fjkbk1ady7sxz9lqkmaw5027xgakn65g9vmssz"; depends=[png raster sp]; }; @@ -19473,21 +19775,20 @@ in with self; { timbeR = derive2 { name="timbeR"; version="2.0.1"; sha256="01lpx4pk22k9j4sbbhr9z7r6spfdrfazpxsyp7cxndrswa8m83zq"; depends=[cowplot dplyr ggplot2 magrittr miniUI shiny tibble tidyr]; }; timbr = derive2 { name="timbr"; version="0.2.2"; sha256="1bz368s1iryxrrxsvq2sbzlm2cnrfqxafzvbsgm6smb3skwyp3sb"; depends=[cli dplyr lifecycle memoise pillar purrr rlang tibble tidygraph vctrs]; }; time_slots = derive2 { name="time.slots"; version="0.2.0"; sha256="04qh8cgk3ixvvc67m2hal935m5kisq2n67cvjmsg1frz1bf2yvld"; depends=[dplyr ggfittext ggplot2 lubridate scales]; }; - timeDF = derive2 { name="timeDF"; version="0.9.0"; sha256="1civib75j61b5hw6jm0ga15y9q67mhd927a5jhk9wik7sfxrd7ll"; depends=[Rcpp]; }; + timeDF = derive2 { name="timeDF"; version="0.9.1"; sha256="1mcz600vrwm8s0vq4b6svraxpk2d7sjs97lw71xvbjm5a6albgbq"; depends=[Rcpp]; }; timeDate = derive2 { name="timeDate"; version="4032.109"; sha256="0n5rzi3bb1wjpqcgpxcagjy815vy8ksjzpkkjzs3333yljyl2a20"; depends=[]; }; timeLineGraphics = derive2 { name="timeLineGraphics"; version="1.0"; sha256="06i2palpc19g0480d53232fj4jd5j0brhdkmj5vcr6p58qsvhyhm"; depends=[berryFunctions magick pdftools R2HTML]; }; timeR = derive2 { name="timeR"; version="1.2.0"; sha256="0lkx2ilbzq29w1c9ssya4f0za0sj7y30y9ml4v3zc21c1la0b6vi"; depends=[lubridate R6]; }; timeROC = derive2 { name="timeROC"; version="0.4"; sha256="1qxijg7hazc8bifwj2254ig2p3cbrp9p0bsyhhh3aikf1rg113v1"; depends=[mvtnorm pec]; }; - timeSeq = derive2 { name="timeSeq"; version="1.0.4"; sha256="0m59g12dmnwpmwjmyb9x6z53x3gjmxcaxqva2dlbazsqkbzgaayp"; depends=[gss lattice mgcv pheatmap reshape]; }; timeSeries = derive2 { name="timeSeries"; version="4032.109"; sha256="07vkppp9azbrn0lv1xhi4s3vpy4mglhysp7d250fl08b9rc4f32y"; depends=[timeDate]; }; timechange = derive2 { name="timechange"; version="0.3.0"; sha256="1d26mr3avw6bpx786k223bnylzqr7z1h7rrjc38pi5db2iahnp6q"; depends=[cpp11]; }; timedelay = derive2 { name="timedelay"; version="1.0.11"; sha256="0hr5a2m621ybvl4qyx1xgwzviszj4ccvb149yclds9z87r5h2gm4"; depends=[MASS mvtnorm]; }; timedeppar = derive2 { name="timedeppar"; version="1.0.3"; sha256="0cg3akp5clyh0jm2808n4glmvfb8pjfsrpiw8724q7zsx3mfhgff"; depends=[mvtnorm]; }; - timeless = derive2 { name="timeless"; version="0.1.0"; sha256="1ak2kksfk78yhjylf6iwcmdgzv8lwx6alck52dznn74y2w6zlr6m"; depends=[]; }; + timeless = derive2 { name="timeless"; version="0.2.1"; sha256="061pfg9p15kywzwmg7mfacj9mdrcn7zxlspb7fjfnmcay40v39n7"; depends=[]; }; timelineS = derive2 { name="timelineS"; version="0.1.1"; sha256="076w8ckzzl59bc1gnwjgdwynnz86320hyfmzb0k26hl3k13jlmxs"; depends=[dplyr ggplot2 lubridate magrittr]; }; timeordered = derive2 { name="timeordered"; version="1.0.0"; sha256="0gcf2mvqzqrqxf7qqfhvxb42y32vxaz5nc29vnyig1lh6bnywkhq"; depends=[igraph plyr]; }; timeperiodsR = derive2 { name="timeperiodsR"; version="0.7.3"; sha256="1ah3am6fyyp3hp3n2028iysx7qv3bbg7mwcvviq7hqi6xrwq7qqi"; depends=[lubridate]; }; - timeplyr = derive2 { name="timeplyr"; version="0.5.0"; sha256="11wk68z8jnpff6is2avlwn60xq11a39y7c9jx6qq26sffidh3ihh"; depends=[collapse cpp11 cppdoubles data_table dplyr ggplot2 lubridate pillar rlang stringr tidyselect timechange vctrs]; }; + timeplyr = derive2 { name="timeplyr"; version="0.8.1"; sha256="0ghr0vrg53fgxmi1w8lx7nfrfxfxhcd4rbi2qrk6pl254n41zwm7"; depends=[cheapr collapse cpp11 cppdoubles data_table dplyr ggplot2 lubridate pillar rlang scales stringr tidyselect timechange vctrs]; }; timereg = derive2 { name="timereg"; version="2.0.5"; sha256="1vzphh7hfkc65r61wms1dh58i3ng7340whqkw947yb4nyvmdvld0"; depends=[lava numDeriv survival]; }; timeseriesdb = derive2 { name="timeseriesdb"; version="1.0.0-1.1.2"; sha256="17j1nxpgbfbzmfc6zrgcw68ri9ncslic9qdkxkdpfr2gi1w61bpc"; depends=[data_table DBI jsonlite RPostgres xts]; }; timetk = derive2 { name="timetk"; version="2.9.0"; sha256="1f6v6gipxi0ydj6fcckk6hgxdx8cfj0f1fyyf092lqx9a7flfp3g"; depends=[anytime dplyr forcats forecast generics ggplot2 hms lubridate padr plotly purrr readr recipes rlang rsample slider stringi stringr tibble tidyr tidyselect timeDate tsfeatures xts zoo]; }; @@ -19500,25 +19801,25 @@ in with self; { tint = derive2 { name="tint"; version="0.1.4"; sha256="1vkdgxxgcj3qk3858sp3zi7c2id3dq0zxz23xd4i8lgbqgvvh2s3"; depends=[htmltools knitr rmarkdown]; }; tinter = derive2 { name="tinter"; version="0.1.0"; sha256="02hfw2720qn70x0piahm8cy2ajsb5bqapr4vyvknm4v1yka1wmw3"; depends=[chk]; }; tinyProject = derive2 { name="tinyProject"; version="0.6.1"; sha256="0cflnfp5mib3j1y3n5yvi867h5a7z6xr6163gq9y9b6nrl2skxfk"; depends=[brew R_utils]; }; - tinyarray = derive2 { name="tinyarray"; version="2.3.2"; sha256="0m2nmkf8ql8v61l6g5j1gl9cjgic98pidr5dl9rvk3xqchp4rmrj"; depends=[BiocManager clusterProfiler dplyr ggplot2 limma patchwork pheatmap stringr survival survminer tibble]; }; - tinycodet = derive2 { name="tinycodet"; version="0.4.5"; sha256="1c4mgawxk54d7m1zalf53a9ipfnx6bv5l0wjx9v3r7filzisvhh2"; depends=[Rcpp stringi]; }; + tinyarray = derive2 { name="tinyarray"; version="2.4.2"; sha256="188zc58yb68jyw3dw7y323slnlgl7872icrwf3zl6s7rm44dmljc"; depends=[BiocManager clusterProfiler dplyr ggplot2 Hmisc limma patchwork pheatmap stringr survival survminer tibble]; }; + tinycodet = derive2 { name="tinycodet"; version="0.5.0"; sha256="1zw9f0586mf78hs115l6bib6c3r1d5n8c9mgyxhqc52vdxv0cqhn"; depends=[Rcpp stringi]; }; tinylabels = derive2 { name="tinylabels"; version="0.2.4"; sha256="01pvnirma3wzfqnnz8zvyqajjyysjm3sd6813bgdhz199lcg7hhz"; depends=[]; }; tinyscholar = derive2 { name="tinyscholar"; version="0.1.7"; sha256="0cd9xbm1gk0v241fqa42hly40vkqb6hcvi8jp9iqq8sgmrs33adh"; depends=[curl dplyr ggplot2 gt jsonlite magrittr purrr R_utils rlang rvest stringr xml2]; }; - tinysnapshot = derive2 { name="tinysnapshot"; version="0.0.4"; sha256="1w9p7fkp7shcks8p1g6y3liqjhcqpydw116x3d0bchwmlra7zpcs"; depends=[diffobj magick tinytest]; }; + tinysnapshot = derive2 { name="tinysnapshot"; version="0.0.5"; sha256="1w41xcimj7p51v484vqkwlzjcv3667mibs2p830wd6r2aq7zadiy"; depends=[diffobj magick tinytest]; }; tinyspotifyr = derive2 { name="tinyspotifyr"; version="0.2.2"; sha256="19nicp1ml73lylja2np52rcc070maxm9286fjm7bfx3zsblxmakc"; depends=[httr jsonlite]; }; - tinytable = derive2 { name="tinytable"; version="0.2.0"; sha256="183lqqp2rxcfszdywhgxclqwlhslmaifybgmc7q1a8nvm9glj82c"; depends=[]; }; + tinytable = derive2 { name="tinytable"; version="0.3.0"; sha256="0ckqa4vl873939wvjalpyafi00dxigiy2219lcn9gr4nyxscpzsq"; depends=[]; }; tinytest = derive2 { name="tinytest"; version="1.4.1"; sha256="0x0w1fiqd98vmpz8yrp9ig0ry1wfr16g6bkjzd2a8sq9gn417z7n"; depends=[]; }; - tinytest2JUnit = derive2 { name="tinytest2JUnit"; version="1.0.3"; sha256="01x43bfma2r5sqk2ccxlmiwnz86gx14vapiszp2daf38f5x82l3b"; depends=[]; }; - tinytex = derive2 { name="tinytex"; version="0.50"; sha256="11k0pl073b4k4wmpxkw4a071jbpvhr1g3cwm9v99rw3gh6p6x15l"; depends=[xfun]; }; + tinytest2JUnit = derive2 { name="tinytest2JUnit"; version="1.1.2"; sha256="1c7vzdyjqqayrsbdasr7zif2m367yvid5y00fhy35r43ggzzhb4n"; depends=[tinytest]; }; + tinytex = derive2 { name="tinytex"; version="0.51"; sha256="1sn8fkmz01x0igsh7ynkqsl5h50ccl4xf8025a87i3mmni8kn4dv"; depends=[xfun]; }; tinythemes = derive2 { name="tinythemes"; version="0.0.2"; sha256="0ps69r9jn5cmx68spq3rgqn784203g8n6lzkdh6ijlx7bzh8frm5"; depends=[ggplot2]; }; - tinytiger = derive2 { name="tinytiger"; version="0.0.8"; sha256="1ixbq9qfv0jlwqca8anng2z9dykpsv46vyrkc7p82a55mx1x8vbg"; depends=[cli curl glue rlang sf]; }; + tinytiger = derive2 { name="tinytiger"; version="0.0.9"; sha256="0nfy0zd7byy2j9mgq4piyjvxdlzw98jajmvni8pp5m6ilac116zy"; depends=[cli curl glue sf]; }; tip = derive2 { name="tip"; version="0.1.0"; sha256="11khhkszd5a81q0h6acx5rvp1k97qj1srcvz2jilwf3v6nrz7daz"; depends=[changepoint doParallel foreach GGally ggplot2 igraph LaplacesDemon mniw network rlang]; }; tipa = derive2 { name="tipa"; version="1.0.8"; sha256="0w637cmg82h758kayf17z70kls7gs1h44b1ridd311j0yz4f5x6a"; depends=[optimx]; }; tipitaka = derive2 { name="tipitaka"; version="0.1.2"; sha256="0xf64bpzwywwjm0135c7zjn4ha0h1zj36rj2d4h8dskiq9z90xqi"; depends=[cpp11 dplyr magrittr stringi stringr]; }; tipmap = derive2 { name="tipmap"; version="0.5.2"; sha256="11wznnhv1jf0g72ahdcxvxm4n3kpdbx6ivdx9cb0c5gdyjh482ss"; depends=[assertthat dplyr furrr future ggplot2 magrittr purrr RBesT]; }; tippy = derive2 { name="tippy"; version="0.1.0"; sha256="00c9v07ax7l0x5wpx3ca8hqvdqs3p62d58igp51rsbh9x1ylgjcn"; depends=[htmltools htmlwidgets jsonlite shiny]; }; tipr = derive2 { name="tipr"; version="1.0.2"; sha256="1vbcgh40j20x8r8f005g1i6iwwrr9sdb68sc4ql8nyddm5bk3rx3"; depends=[cli glue purrr rlang sensemakr tibble]; }; - tipsae = derive2 { name="tipsae"; version="0.0.18"; sha256="0w7ig4p23zgsn8q95cx6l031yz8kd1dk8jmzw5sf7b2b5snxlhvd"; depends=[BH ggplot2 ggpubr nlme Rcpp RcppEigen RcppParallel Rdpack rstan shiny sp StanHeaders]; }; + tipsae = derive2 { name="tipsae"; version="1.0.1"; sha256="1ay67c3hlfzzflzcjwh9jqmy70jbvxp0bri1cc8vvs3ipdinygg9"; depends=[BH ggplot2 ggpubr nlme Rcpp RcppEigen RcppParallel Rdpack rstan shiny sp StanHeaders]; }; tis = derive2 { name="tis"; version="1.39"; sha256="1sq3acz8mybsbxng5fga4ynqvh1ly9hs3ca727jiyx1gam712mis"; depends=[]; }; titanic = derive2 { name="titanic"; version="0.1.0"; sha256="0mdmh0ciwfig00847bmvp50cyvj8pra6q4i4vdg7md19z5rjlx3j"; depends=[]; }; titeIR = derive2 { name="titeIR"; version="0.1.0"; sha256="047vidn3zydbjijwgz6qm2d9j2ny8ng2sv5jzm8zb300y7k2426c"; depends=[Iso]; }; @@ -19527,11 +19828,11 @@ in with self; { tkRplotR = derive2 { name="tkRplotR"; version="0.1.7"; sha256="1n8ihn6ys68dzfxi1wqdbq00qm41fwjw2vn9i3wyb4w1j73v82zy"; depends=[]; }; tkrplot = derive2 { name="tkrplot"; version="0.0-27"; sha256="19bj4wn1fs4wrx5k4gakhpz4q59fgx0584wyaw7hnh0ljj8i34n9"; depends=[]; }; tlars = derive2 { name="tlars"; version="1.0.1"; sha256="1hahhyw9imhkf1aq48m8prrm46cj9r6ibnrq9k1l5zxy4gzw630g"; depends=[Rcpp RcppArmadillo]; }; - tldr = derive2 { name="tldr"; version="0.3.0"; sha256="0p02ivcy5as46ffds1pg3ibhq0f06lrs2dygfair32cp21x0y9f7"; depends=[ggplot2 reshape2 tableone]; }; + tldr = derive2 { name="tldr"; version="0.4.0"; sha256="10cf5d5wa0vhpysqjai220aps9v8wk2hsyvjj74alj5x5knh5p41"; depends=[ggplot2 reshape2 tableone]; }; tlm = derive2 { name="tlm"; version="0.1.5"; sha256="1iw08pa70nb25fnv64834s5c8vl456a2rcng7x6v9vs5q37610g6"; depends=[boot]; }; tlrmvnmvt = derive2 { name="tlrmvnmvt"; version="1.1.2"; sha256="0zcf4pz7dz49hz8srr49rvksx7jfjss1sp4zlipbx89aq0l2l94p"; depends=[BH Rcpp RcppEigen]; }; tls = derive2 { name="tls"; version="0.1.0"; sha256="183b5m70s2whlgp9s1gb4xnylhlp4hnh3lw6b8f2vx4kahaid763"; depends=[]; }; - tm = derive2 { name="tm"; version="0.7-12"; sha256="1z0zpz6jgzg34cz07cdpya2zwwsvywrd8xgwahhlz15vnaij7j3y"; depends=[BH NLP Rcpp slam xml2]; }; + tm = derive2 { name="tm"; version="0.7-13"; sha256="1d0xczmmfsj82183nygvb4f9h1qbydz763b3jlzxb6ns8pi6q9p5"; depends=[BH NLP Rcpp slam xml2]; }; tm_plugin_alceste = derive2 { name="tm.plugin.alceste"; version="1.1.1"; sha256="1l1vn7nn54s92l7ag6kk9vrxzchvp0mvmm62irigk9byqmvrnjcc"; depends=[NLP tm]; }; tm_plugin_dc = derive2 { name="tm.plugin.dc"; version="0.2-10"; sha256="0v14fj3r438pvs88k4zwlzkgax8r0k6cx4mqjnzzad15frqficij"; depends=[DSL NLP slam tm]; }; tm_plugin_europresse = derive2 { name="tm.plugin.europresse"; version="1.4"; sha256="03qi9rkfwgjvir4cjpi9imc8zaldvan42v9lqfr5d6zhr0ajy6wx"; depends=[NLP tm XML]; }; @@ -19544,28 +19845,28 @@ in with self; { tmaptools = derive2 { name="tmaptools"; version="3.1-1"; sha256="0bal3czrdr93qig8s5cf5szld5vjbbks67rismfhlkmlgw6wp2gx"; depends=[dichromat lwgeom magrittr RColorBrewer sf stars units viridisLite XML]; }; tmbstan = derive2 { name="tmbstan"; version="1.0.91"; sha256="0wsa1999iaxzzbh27xmw8qfka1hzfi81kf6p3zlhfq8299vrg4py"; depends=[BH Rcpp RcppEigen RcppParallel rstan StanHeaders TMB]; }; tmcn = derive2 { name="tmcn"; version="0.2-13"; sha256="0rf8mz6kdm83pm85kzfyzb8kd3iwaxv5bgphjpxlnq6z32m9yds7"; depends=[]; }; - tmle = derive2 { name="tmle"; version="2.0.0"; sha256="19rgp2m793zs8wd97c0fmjqj1mvq608xj8nm4w12c9nl8nvwm4w6"; depends=[glmnet SuperLearner]; }; + tmle = derive2 { name="tmle"; version="2.0.1.1"; sha256="1xl71md4rld9yk0z47qki1pg4mhgblmc9adqzwd2157dfvqlh94c"; depends=[glmnet SuperLearner]; }; tmod = derive2 { name="tmod"; version="0.50.13"; sha256="160aibvkz4ilyaig3bvkam6g96cngaynwsfrzh6vpq9xyraqxpix"; depends=[beeswarm ggplot2 ggrepel gplots pheatmap plotwidgets purrr RColorBrewer rlang tagcloud tibble tidyr tidyselect XML]; }; tmplate = derive2 { name="tmplate"; version="0.0.3"; sha256="1w04bmir23ip3c7janix8i2qhdnmlg78jrrjlykl95vnsvjwld6g"; depends=[tRnslate]; }; tmpm = derive2 { name="tmpm"; version="1.0.3"; sha256="1fqk39zyc07gh0ygi7pfljlnj6ih37jsb7bcxm05zcd4796wil8j"; depends=[reshape2]; }; tmsens = derive2 { name="tmsens"; version="0.3.0"; sha256="0xdcmz2mqfb7agjgmkv4kgschsdlxqsjv5z30z8bpqxbi45x9ry0"; depends=[]; }; - tmt = derive2 { name="tmt"; version="0.3.1-10"; sha256="02jqa2ddmwp5qb06gbcfgm39pc54y9igmcwrqkqhdbj55jcbmy7l"; depends=[ggplot2 Rcpp rlang]; }; + tmt = derive2 { name="tmt"; version="0.3.4-0"; sha256="0n0wrgrf99bvlwbgjgx3sa8icmjqy1swc0ck3l1yja228qc26179"; depends=[ggplot2 Rcpp rlang]; }; tmvmixnorm = derive2 { name="tmvmixnorm"; version="1.1.1"; sha256="0i1g3598d43azyy1bsrvkjybqa5cd991fpmfqi5wv5703zaha2fj"; depends=[MASS]; }; tmvnsim = derive2 { name="tmvnsim"; version="1.0-2"; sha256="03xsvsg9bqvgl98ywid3h91mmlhax5s6wvmypp3hq91vmc5kvxlp"; depends=[]; }; tmvtnorm = derive2 { name="tmvtnorm"; version="1.6"; sha256="1fhvisddn3x4li2q12c3hss0cj735c0iq32c9cw646ni619jr6rd"; depends=[gmm Matrix mvtnorm]; }; tmvtnsim = derive2 { name="tmvtnsim"; version="0.1.3"; sha256="15nhk21x9yklpxnqmd6qblmh0g4p9065hkvy26gd8ppaz19law5s"; depends=[Rcpp RcppArmadillo]; }; tnet = derive2 { name="tnet"; version="3.0.16"; sha256="0922y9zb64zazl2irwfxxbghkgcwi2q57gylpiaxgmj4q6lc62l9"; depends=[igraph survival]; }; tnl_Test = derive2 { name="tnl.Test"; version="0.1.0"; sha256="13yhxsj33lzbd5mbrwznilim5zsqcnj9y9c1qfh7c3ml2pa3s2vp"; depends=[partitions plyr]; }; - tntpr = derive2 { name="tntpr"; version="1.0.2"; sha256="0ic95bbc91lih6wjmb61zg3m01qzbzkf5y03iy2wrac03yvlym88"; depends=[cli dplyr extrafont formattable ggplot2 janitor keyring labelled lubridate magrittr purrr readr rlang rstudioapi scales stringr tibble tidyr tidyselect]; }; + tntpr = derive2 { name="tntpr"; version="1.0.3"; sha256="09vxsv5f5inl8pdlz4lap4zfry90lb58h3bypvj9grd2n75qxsrf"; depends=[cli dplyr extrafont formattable ggplot2 janitor keyring labelled lubridate magrittr purrr readr rlang rstudioapi scales stringr tibble tidyr tidyselect]; }; toOrdinal = derive2 { name="toOrdinal"; version="1.3-0.0"; sha256="1zfx91024dyafkfyjsm2829qsqkz57g6p5v47lp2x0ykrwpdbm37"; depends=[crayon testthat]; }; - toastui = derive2 { name="toastui"; version="0.3.2"; sha256="0hkww0q39skcah6mvbbs0pdlnzac3jwjgwkidp9as99qb1l4bzj8"; depends=[htmltools htmlwidgets magrittr phosphoricons rlang shiny shinyWidgets]; }; + toastui = derive2 { name="toastui"; version="0.3.3"; sha256="1m6l3acvsznhm22gvc9jjl8jnlxa3l6l6s42mdv04kwzw1qqm6xp"; depends=[htmltools htmlwidgets magrittr phosphoricons rlang shiny shinyWidgets]; }; todor = derive2 { name="todor"; version="0.1.2"; sha256="1ncg88wh9l2mja5w53ry2b19sa5x9m6cnkvw8lszbmc92idpspig"; depends=[R_utils rex rstudioapi stringr]; }; togglr = derive2 { name="togglr"; version="0.2.1"; sha256="12fmj6h8vx8f46qhadgwcaq0cn55jwi8kvnci1hw7cld46f4s50l"; depends=[assertthat cachem dplyr getPass glue httr jsonlite keyring lubridate magrittr memoise parsedate prettyunits purrr rappdirs rstudioapi]; }; tok = derive2 { name="tok"; version="0.1.1"; sha256="1rbn5b6gc5qx8d8rggxbvcs2phrdxj9r72sl6l75vpn4hh4ffpi6"; depends=[cli R6]; }; tokenbrowser = derive2 { name="tokenbrowser"; version="0.1.5"; sha256="17hbkcan74j4fkk4j1xcgikaanp3xhs5njjxkapg2yjdhmf2dng6"; depends=[Rcpp stringi]; }; tokenizers = derive2 { name="tokenizers"; version="0.3.0"; sha256="0a8wm4cff3hrll991h2rimw79kpf2jsn78y7yksdk8m18931wmr4"; depends=[Rcpp SnowballC stringi]; }; tokenizers_bpe = derive2 { name="tokenizers.bpe"; version="0.1.3"; sha256="0ar84a19c2qafdyx666ggbvl0sqv3pxg3yg3qpv59s7cbbdymwc1"; depends=[Rcpp]; }; - tolerance = derive2 { name="tolerance"; version="2.0.0"; sha256="001snzr2ipag3zprynydlbi9prkjzrllc054qh7m0qwkb3r19jjd"; depends=[MASS rgl]; }; + tolerance = derive2 { name="tolerance"; version="3.0.0"; sha256="0pk75i0qmfrpm02jm4c0vvryq3f2drmj9dzj1q0zr3sbmp9w6mpf"; depends=[MASS plotly]; }; tomba = derive2 { name="tomba"; version="1.0.1"; sha256="1433jxghx8jrgy8r9kfp506vn58qpzp4wbzncks7fnignbb6cp50"; depends=[httr jsonlite testthat]; }; tongfen = derive2 { name="tongfen"; version="0.3.5"; sha256="1xg5jvrl4cv86rylhyiyfdyhb9gr5vdabsp1cdfnz7wpmdkpwnxl"; depends=[dplyr lifecycle purrr readr rlang sf stringr tibble tidyr]; }; toolStability = derive2 { name="toolStability"; version="0.1.2"; sha256="032czpmr484jm10i0pz9f3jyzkqrz5s11q2nxrhk8jrlg0s427lr"; depends=[data_table dplyr nortest Rdpack]; }; @@ -19585,11 +19886,11 @@ in with self; { toprdata = derive2 { name="toprdata"; version="1.0.2"; sha256="1zn8w1c74nxm67xzk556zirhnfyi82wk34amy5a869a15lwchhaz"; depends=[]; }; topsis = derive2 { name="topsis"; version="1.0"; sha256="056cgi684qy2chh1rvhgkxwhfv9nnfd7dfzc05m24gy2wyypgxj3"; depends=[]; }; tor = derive2 { name="tor"; version="1.1.2"; sha256="1s34hzw3a4cm9gk85fcxgxwmn2xc7njs1iw1snd91id3gdl6vppx"; depends=[fs readr rlang tibble]; }; - torch = derive2 { name="torch"; version="0.12.0"; sha256="024c8szg3xa2zrl5406jx3bmazbjwp2f07ja7m61ja0dr3z7lvbq"; depends=[bit64 callr cli coro desc ellipsis glue jsonlite magrittr R6 Rcpp rlang safetensors withr]; }; + torch = derive2 { name="torch"; version="0.13.0"; sha256="1vy855ahji98np2q5j5fag2zcnv4ki5mysxwg3y5kdns6mifd5ns"; depends=[bit64 callr cli coro desc ellipsis glue jsonlite magrittr R6 Rcpp rlang safetensors withr]; }; torchaudio = derive2 { name="torchaudio"; version="0.3.1"; sha256="1zn9z2z2yv1xjmpf5xcyxachmmbwk2g0y3nipvjgpwbqkjr7p9y6"; depends=[av fs glue rlang torch]; }; torchdatasets = derive2 { name="torchdatasets"; version="0.3.0"; sha256="1mq87sgy9v1526iy03zpslkjxx7379q6x9dqs0nslvvfwk9sry4q"; depends=[fs pins stringr torch torchvision withr zip]; }; torchopt = derive2 { name="torchopt"; version="0.1.4"; sha256="0qcygp8jpx2192nfcki5mqb9gi4gzlc68yf6in8y88lvy8dj8ll2"; depends=[torch]; }; - torchvision = derive2 { name="torchvision"; version="0.5.1"; sha256="0649rgrh4fbswc3ab92af2z1hf61nbb7wf8yf5n9b9ajnvfkvxbp"; depends=[abind fs jpeg magrittr png rappdirs rlang torch withr]; }; + torchvision = derive2 { name="torchvision"; version="0.6.0"; sha256="0n78x9dyj9dk2dpsmx5zbm1842nhfnb7jszva320avr72w6a4386"; depends=[abind fs jpeg magrittr png rappdirs rlang torch withr]; }; torchvisionlib = derive2 { name="torchvisionlib"; version="0.5.0"; sha256="1n9gvidi3lvcq730c70mzh94w42asv903708fqyqp2wrs68884na"; depends=[glue Rcpp rlang torch withr]; }; tornado = derive2 { name="tornado"; version="0.1.3"; sha256="0bbbrsdnb77svji981py33hq2z27if5qsv5xpmpl29sf3h1s1yjc"; depends=[assertthat ggplot2 gridExtra rlang scales survival]; }; tosca = derive2 { name="tosca"; version="0.3-2"; sha256="1z8svczy93lpdj7n1gk9jz8jgzkjsf886ldlkgq1mfi1j6m8557y"; depends=[data_table htmltools lda lubridate quanteda RColorBrewer stringr tm WikipediR]; }; @@ -19597,8 +19898,9 @@ in with self; { toscutil = derive2 { name="toscutil"; version="2.7.4"; sha256="07b89f43d9dm0lyfc0fd15bv2gxqmzz3ly9gzggix04v8zxivm2i"; depends=[languageserver rlang]; }; tosr = derive2 { name="tosr"; version="0.1.4"; sha256="1ab1jh60dp2b8vnd2vvva6w5rsidyavp8i9gsbwcqr5rmnmxg67q"; depends=[bibliometrix dplyr igraph magrittr rebus rlang stringr tibble tidyr]; }; totalcensus = derive2 { name="totalcensus"; version="0.6.6"; sha256="09c7hm9yys48p8pjp9kv3szbwrg9xb1xf47zya24yir0gxs7bfmi"; depends=[data_table magrittr purrr stringr]; }; + touRnamentofchampions = derive2 { name="touRnamentofchampions"; version="0.1.0"; sha256="0mkqqfai4gq5ccfhmxysvvhcx304z511cv210iam9p0ypnyh01lk"; depends=[tidyverse]; }; touch = derive2 { name="touch"; version="0.1-6"; sha256="0w25zxxj5qaxkx64vz55qw4k4szx85ncbcam7q600ryy1kc5xxxv"; depends=[Rcpp]; }; - tourr = derive2 { name="tourr"; version="1.1.0"; sha256="1hs4f5ry8pn50c93433q4cg9ksyj78g7x4fv7p5i1qg3pjnr7rh0"; depends=[dplyr MASS tibble]; }; + tourr = derive2 { name="tourr"; version="1.2.0"; sha256="1sbaf94ms03jw5bc04xf974zp7zgfdx9xv8yl4hch82kfmfcdmxy"; depends=[dplyr MASS tibble]; }; toweranNA = derive2 { name="toweranNA"; version="0.1.0"; sha256="1nncjhfz0fgjhvhkfy55kjr6as6qm0n1d1mj1w1z3d6304ai6863"; depends=[FNN pdist regtools rmarkdown]; }; toxEval = derive2 { name="toxEval"; version="1.3.2"; sha256="1dyrbvb2l7bdz6d0lph7s8m3ydy6wz9k01qd9ilvkdqcf3y05ih0"; depends=[dplyr DT ggplot2 leaflet magrittr RColorBrewer readxl shiny shinyAce shinycssloaders shinydashboard tidyr]; }; toxSummary = derive2 { name="toxSummary"; version="1.0.0"; sha256="1pxd8sgbby2n6bpcfxng0mj60xx5mx5m0svmqn355cl49vfccsbg"; depends=[cicerone data_table DBI dplyr DT flextable fs ggiraph ggplot2 htmltools magrittr patchwork rlang RSQLite scales shiny shinycssloaders shinydisconnect stringr]; }; @@ -19606,16 +19908,19 @@ in with self; { tpAUC = derive2 { name="tpAUC"; version="2.1.1"; sha256="0wix9qwcidj7xfqhh7bmrpnadd9qlkvg3515gaamdxkjbz2kyydc"; depends=[pROC]; }; tpc = derive2 { name="tpc"; version="1.0"; sha256="0zkls2vf8j1rq5ryn4w295a6gcy57vr3zghyck8jwgl9pd5zcc4x"; depends=[graph pcalg]; }; tpfp = derive2 { name="tpfp"; version="0.0.1"; sha256="0vm5qssaanvi0sck2hj1qgjra89a42i6nvzbva5z0aj2hkd5h4vh"; depends=[knitr readxl xlsx]; }; + tpm = derive2 { name="tpm"; version="2.0.2"; sha256="1hya9sa8sdhcqk1nn2f9lr420mdj9qq6dv3gbkn8rwa0w12zbqhz"; depends=[data_table fasttime]; }; tpn = derive2 { name="tpn"; version="1.8"; sha256="1jhddrgkzlwmljqzy4hgday4ydyc76fskk2ahnz9x2abfm21dx7g"; depends=[moments pracma RBE3 skewMLRM VGAM]; }; tpr = derive2 { name="tpr"; version="0.3-3"; sha256="13xi4a9pdhqyg56jcimcqxfz3zcpzyhb6y7nh73dr09w8picq6gj"; depends=[lgtdl]; }; + tpwb = derive2 { name="tpwb"; version="0.1.0"; sha256="120mwlbi5q4ghja9n3mw65g7zi2ji17zgjpzcyyk7isvmrn426h1"; depends=[]; }; tqk = derive2 { name="tqk"; version="0.1.8"; sha256="1l4zsmfnpzcn34pjwzfr511qn7y03bymdak4pcysrj4s49xgx4qj"; depends=[dplyr httr jsonlite magrittr tibble]; }; tr_iatgen = derive2 { name="tr.iatgen"; version="1.0.0"; sha256="0bwr6c5mg41avsjj55wql0nyvb9pix8n5rpzlqjsq93xwixapy5s"; depends=[shiny]; }; tracee = derive2 { name="tracee"; version="0.0.4"; sha256="0ny6769zdl2i5y3fy3ysww91i5s0n86rcciaalryg6ms18989x0r"; depends=[data_table flextable ggplot2 gridExtra NMdata]; }; + tracenma = derive2 { name="tracenma"; version="0.1.0"; sha256="087bqwnl8n8aqb7k2xc39flvdn6c1z353p0zk8z1rn4nbyswp2nv"; depends=[]; }; tracer = derive2 { name="tracer"; version="1.0.0"; sha256="1jdh4ljcz7d0w2y5miggqkvv397jdx7fn108hbjw93af2gnh698q"; depends=[clisymbols crayon prettycode]; }; tracerer = derive2 { name="tracerer"; version="2.2.3"; sha256="0jqf0p0j0g4naspgg9k7jxslwcdqwv7mxca41wyffrgglgya8rci"; depends=[jsonlite Rcpp testit]; }; tracheideR = derive2 { name="tracheideR"; version="0.1.1"; sha256="1x1jwzgs2aqb3k17mm9mhfhnbwcmilhkjaz9rl40rcg84xjqdrpl"; depends=[tgram]; }; track2KBA = derive2 { name="track2KBA"; version="1.1.1"; sha256="0lhx18vilxlac3z9vrwjcxjvinkdpp1njkvg82dyz1sqby3fa9f8"; depends=[adehabitatHR dplyr foreach geosphere ggplot2 lubridate magrittr maps Matching move purrr raster rlang sf sp tidyr]; }; - trackdem = derive2 { name="trackdem"; version="0.6"; sha256="069nl1i73ayjnlsds4dnz6w4n765jijimgz20n9az7r0irvaddhi"; depends=[MASS neuralnet png raster Rcpp RcppArmadillo shiny]; }; + trackdem = derive2 { name="trackdem"; version="0.7.2"; sha256="0i3zjdykdv92b4g7gvr83rmx8cvwmm7w5chbxr6si08zw0jipzzn"; depends=[MASS neuralnet png raster Rcpp RcppArmadillo shiny]; }; trackdf = derive2 { name="trackdf"; version="0.3.3"; sha256="0ymg8ykr02qvkkp2avrfg384bhgzaqj3wff8shwnhkiaabi50d7b"; depends=[data_table dplyr lubridate sf tibble]; }; trackdown = derive2 { name="trackdown"; version="1.1.1"; sha256="1l8mqdfpdf25vyibxqcqhyip6aqllb9riz2v6w4k1rfc8b9dl07f"; depends=[cli googledrive rmarkdown]; }; trackeR = derive2 { name="trackeR"; version="1.6.0"; sha256="06fyki3w73hdmwlsmp6k5g5x6vs60ysznji3bgi9kpphcbn85frg"; depends=[fda foreach ggmap ggplot2 ggridges gridExtra gtable jsonlite leaflet raster RSQLite scam sp xml2 zoo]; }; @@ -19627,14 +19932,15 @@ in with self; { trafo = derive2 { name="trafo"; version="1.0.1"; sha256="0gq3snjpkw0ncny7pkfi686qkgdhd8id73jxjk3chhqf5mzrrsbc"; depends=[FNN lmtest moments pryr]; }; trainR = derive2 { name="trainR"; version="0.0.1"; sha256="0wmxhw8yxkxpw08jma3r0zy7dhsrkbh5wjvd3izp5gf9dn9533cd"; depends=[dplyr glue lubridate magrittr purrr RCurl stringr tibble tidyr usethis xml2]; }; traineR = derive2 { name="traineR"; version="2.2.0"; sha256="0a07l38k18x97yzqh8qcaza4fac0r2ngf3588v3nrvhcm3wz70az"; depends=[ada adabag dplyr e1071 gbm ggplot2 glmnet kknn MASS neuralnet nnet randomForest ROCR rpart stringr xgboost]; }; + trainsplit = derive2 { name="trainsplit"; version="1.1"; sha256="12qmjpqi7ib4p6lbk3v6z63xdygbyry0a33whgy42jm0jcjswwx8"; depends=[data_table]; }; traipse = derive2 { name="traipse"; version="0.3.0"; sha256="1ln0l8dkslj8pf0h5g5pj5iwy9x05nfkp1x36dxbi5iab88cv76w"; depends=[geodist geosphere magrittr]; }; - traits = derive2 { name="traits"; version="0.5.0"; sha256="04s2523wkbjqxpwllvcy7ikyfri5gldgnynjswsxdy0k945wacvz"; depends=[crul data_table hoardr httr jsonlite readr rvest taxize tibble xml2]; }; + traits = derive2 { name="traits"; version="0.5.1"; sha256="1jkap9qh3m2hxwib0h3vqzs2rc0dfnk875nbsr682sad8mx8i01h"; depends=[crul data_table hoardr httr jsonlite readr rvest taxize tibble xml2]; }; traitstrap = derive2 { name="traitstrap"; version="0.1.0"; sha256="1yq4ngpqizlcmbcypdbsxrc9kixm6b44zimyijl7404bzz6hbs5a"; depends=[dplyr e1071 fitdistrplus ggplot2 glue purrr rlang stringr tibble tidyr]; }; - traj = derive2 { name="traj"; version="2.0.1"; sha256="049vllrxsgp1hsjh8w79nybmcl40wlnjp5bxdkjrc0r3yi8mvc0v"; depends=[cluster psych]; }; + traj = derive2 { name="traj"; version="2.1.0"; sha256="157v3bhb10x0fndx64pq3m5ddmwj070j1ca3d8ff64kpkfbxdgd3"; depends=[cluster psych]; }; trajectories = derive2 { name="trajectories"; version="0.2-8"; sha256="0rs4jlj2w9byvx47kvp4aayh485ck2xra3pkpjl95dyk8b0xpl4d"; depends=[lattice sp spacetime zoo]; }; trajmsm = derive2 { name="trajmsm"; version="0.1.0"; sha256="1nxklv2hsv4kry3zzyga2qgjjb0jhsx4f3l8a0k1j6lx2p7ysjah"; depends=[class e1071 flexmix geepack ggplot2 sandwich survival]; }; trajr = derive2 { name="trajr"; version="1.5.1"; sha256="0sc0lyyp6qw71l6p2d6g5iszkcqpps6k2vb4798j76cl72fw5b52"; depends=[plotrix signal]; }; - tram = derive2 { name="tram"; version="1.0-2"; sha256="1kl4hcjpp52xx2z0xk0wd0zibqrxb1smigxsvfgrzr8djvm4si3b"; depends=[basefun Formula Matrix mlt multcomp mvtnorm sandwich survival variables]; }; + tram = derive2 { name="tram"; version="1.0-4"; sha256="04hbvsqawfqvfgmzbnbwxy6jlpnglpgmrnl9gp5kb6in36as92jz"; depends=[basefun Formula Matrix mlt multcomp mvtnorm sandwich survival variables]; }; tramME = derive2 { name="tramME"; version="1.0.5"; sha256="1rfs38v0w2rxldxngbc1d6118cjnc8ad4zn2csqk8bg882b1yn18"; depends=[alabama basefun coneproj lme4 MASS Matrix mgcv mlt mvtnorm nlme numDeriv RcppEigen TMB tram variables]; }; tramicp = derive2 { name="tramicp"; version="0.0-2"; sha256="1d5dj695q16il35pmfi6kb0m78mdjj5gsirqb2sd74jwgj32qy5b"; depends=[basefun coin cotram dHSIC MASS mlt multcomp ranger sandwich survival tram variables]; }; tramnet = derive2 { name="tramnet"; version="0.0-8"; sha256="19hx2hn8m5abfzp4sm0myhxlx9hp2rl7dry5izxsfjjls3h8z1n4"; depends=[basefun CVXR lhs mlr mlrMBO mlt ParamHelpers sandwich smoof tram]; }; @@ -19653,12 +19959,12 @@ in with self; { transmdl = derive2 { name="transmdl"; version="0.1.0"; sha256="16lvcjwb7hq4a4925kqnas7c4xqw3gpbad3fcghp0qm4whyig8dg"; depends=[Rcpp RcppEigen statmod survival]; }; transmem = derive2 { name="transmem"; version="0.1.1"; sha256="1a3c5ddmh9k4f80rbk363s7rkx30qhk9ssmf7xg7rr0lwxphahf3"; depends=[cmna ggformula ggplot2 plot3D]; }; transplantr = derive2 { name="transplantr"; version="0.2.0"; sha256="1kzi8rvswsmibxqnhqd1j42y848si6cxd8hpvwi55y8s4hcylw0y"; depends=[]; }; - transport = derive2 { name="transport"; version="0.14-7"; sha256="05l7slph5as2kzxv1s81v7pjc83w8ak7d8cxndc2pqny14sx07n0"; depends=[data_table Rcpp RcppEigen]; }; + transport = derive2 { name="transport"; version="0.15-2"; sha256="0pf0lza2qf0alwphiy978fyp58k3lz5i44kcw86a3rrf7cpf4rwa"; depends=[data_table Rcpp RcppEigen]; }; transreg = derive2 { name="transreg"; version="1.0.2"; sha256="1kh106kgnjliw84p219g317img4aaas8s2bm5x6pakvswqf2qjxw"; depends=[glmnet joinet starnet]; }; transx = derive2 { name="transx"; version="0.0.1"; sha256="1xx934w4fhk2nwm5h6lf4irj83wsfp8lbplzcha5rnc7aka8pn3v"; depends=[rlang]; }; trapezoid = derive2 { name="trapezoid"; version="2.0-2"; sha256="1pqb888w0q2zhcgjn0q4na2qwbxy4i8kfk6pp2id20gh8s96sm3f"; depends=[]; }; - traudem = derive2 { name="traudem"; version="1.0.2"; sha256="11bwmn1fgymya5scsbby815mvaa037nnvb2y1l9h4jy1q3g8zwga"; depends=[cli purrr rlang sys withr]; }; - traveltimeR = derive2 { name="traveltimeR"; version="1.1.4"; sha256="00mak79ixyzr2d4s8gp4hh84akh97xrdqxih483md0ybnn69j4i9"; depends=[data_table httr jsonlite RProtoBuf]; }; + traudem = derive2 { name="traudem"; version="1.0.3"; sha256="043bk7zv80n3s3f616n1qls10aqzfy4hflgz8rgkjdmjxhmk0657"; depends=[cli purrr rlang sys withr]; }; + traveltimeR = derive2 { name="traveltimeR"; version="1.2.1"; sha256="1029hxdgzapx0irvq5ir18fpdm5cyj5wjvl1h88x3g1rs88pvfzi"; depends=[data_table httr jsonlite RProtoBuf]; }; trawl = derive2 { name="trawl"; version="0.2.2"; sha256="1a8cvkmw7bmdljggfv26n2nrad6974spga2yw5386k70ghq56mz3"; depends=[DEoptim ggplot2 ggpubr MASS rootSolve Runuran squash TSA]; }; treasury = derive2 { name="treasury"; version="0.1.0"; sha256="1h87pwzd474bw2rsq2cvv2jw2nkr9lxjnc5grhqsq6vd2hlkwch5"; depends=[httr2 rlang xml2]; }; treats = derive2 { name="treats"; version="1.0"; sha256="16ahw46wkjhvxhkiy4313ky9vvzjrg2bhxw1pz0j4hasdkd9xq1s"; depends=[ape dispRity MASS rgl]; }; @@ -19668,10 +19974,9 @@ in with self; { treeClust = derive2 { name="treeClust"; version="1.1-7"; sha256="1s7kh6q0bkixsygrip95zf1bi10ihddsa5lq9dfxd68yh8rsby6z"; depends=[cluster rpart]; }; treeDA = derive2 { name="treeDA"; version="0.0.5"; sha256="0rdqvjj16w7ykpxd6m800h4zv79y9c1phhkl14xy10gbi2cqh10g"; depends=[ape ggplot2 gtable Matrix mvtnorm phyloseq reshape2 sparseLDA]; }; treeDbalance = derive2 { name="treeDbalance"; version="1.0.1"; sha256="0i2sqvqjiw26z3fnbz6h3ki2yjhy0g33rr7wd4bl4vwvr833z7c2"; depends=[rgl]; }; - treePlotArea = derive2 { name="treePlotArea"; version="2.0.0"; sha256="1wi39lbsml9zg2pp52x81l27iq1780036vfq5zmhxv26zn6bajf9"; depends=[fritools sf]; }; + treePlotArea = derive2 { name="treePlotArea"; version="2.1.0"; sha256="0swj43mv121jjljabng43ljllrb3ap7clmxjy8j6aav28i2mv0f5"; depends=[fritools sf]; }; treebalance = derive2 { name="treebalance"; version="1.2.0"; sha256="0mj621kx0gsik8ds0gch3g5b7ndbncw4hin2h2jzlgp7hylkmlhi"; depends=[ape gmp memoise]; }; treebase = derive2 { name="treebase"; version="0.1.5"; sha256="07rggigdgjbmz9wvbkxs6xcwg6k53zb4j4rvlfrgb5b4mq44s0wj"; depends=[ape httr RCurl XML]; }; - treeclim = derive2 { name="treeclim"; version="2.0.6.0"; sha256="0zdn766vxgycisjyjw7nh7hs817kqhdihyla3fhpzykw9pxnw0b2"; depends=[abind boot ggplot2 lmodel2 lmtest np plyr Rcpp RcppArmadillo]; }; treedata_table = derive2 { name="treedata.table"; version="0.1.0"; sha256="0dhnb8if5wq6hzhjg40cw80sacigqmlm7nplm1f1ay5cqx1ynfi7"; depends=[ape data_table geiger lazyeval]; }; treedater = derive2 { name="treedater"; version="0.5.0"; sha256="007rdrbv3v1z3qbyasla22rck105sqlqh93yfmxklihdydl7smfd"; depends=[ape limSolve]; }; treediff = derive2 { name="treediff"; version="0.2.1"; sha256="00yhqbxgz35fnz940zkqr0kylzqb55l1yhilphw1yzks3wmsd4id"; depends=[adjclust BiocGenerics csaw data_table dplyr HiCDOC InteractionSet limma purrr reshape2 rlang SummarizedExperiment testthat]; }; @@ -19679,7 +19984,6 @@ in with self; { treeheatr = derive2 { name="treeheatr"; version="0.2.1"; sha256="0618j5rlq0xik9vl2l8ircnh98wzdzf9bxnfgmiqrpywgmc8r5nk"; depends=[cluster dplyr ggnewscale ggparty ggplot2 gtable partykit seriation tidyr yardstick]; }; treemap = derive2 { name="treemap"; version="2.4-4"; sha256="1h3pas3kn8zrpdpvp9vs745q94kixw5lxkbq74l5lh0n3wkqnnn5"; depends=[colorspace data_table ggplot2 gridBase igraph RColorBrewer shiny]; }; treemapify = derive2 { name="treemapify"; version="2.5.6"; sha256="1w15y842rp2zg5whf3x4fahsi0mvnk92w9rgnsgqivdamzrnd9qg"; depends=[cli ggfittext ggplot2]; }; - treemisc = derive2 { name="treemisc"; version="0.0.1"; sha256="0289grmgcvdszsb9lhgygm1dahlcn1m50lh110ny5yjh1b4627kn"; depends=[Matrix Rcpp rpart]; }; treenomial = derive2 { name="treenomial"; version="1.1.4"; sha256="0vx5x7078ccn2bsmcxdls3ymmc7jx71xzq0va0n7gyw36gi7k3nn"; depends=[ape Rcpp RcppArmadillo RcppThread]; }; treeshap = derive2 { name="treeshap"; version="0.3.1"; sha256="1ipj5k9dgrnbny0z2ydsdvdzg5ba53alyidnh90a08y2dhd4wffs"; depends=[data_table ggplot2 Rcpp]; }; treesliceR = derive2 { name="treesliceR"; version="1.0.1"; sha256="1hsb4rjl7kl2q9z4mkpsnwf6a8r0j1m6y4sl112rssrwrk836gb8"; depends=[ape doParallel foreach ggplot2 sf]; }; @@ -19703,6 +20007,7 @@ in with self; { triangle = derive2 { name="triangle"; version="1.0"; sha256="0vl8rgasmxb64kkk4vph4b7jzmyq9c0lp5jfr9ybmd8czaz6947l"; depends=[assertthat]; }; triangulation = derive2 { name="triangulation"; version="0.5.0"; sha256="1zp09g0s0qpqgz2k6jx32pswh2zqyyd0b62lf1dx1p46m28dafkn"; depends=[]; }; triangulr = derive2 { name="triangulr"; version="1.2.1"; sha256="1fjibp1rhgj363z3gn2iia5iv1hahdabwpxd7q3lxqzxwzs4nfd5"; depends=[cpp11 rlang vctrs]; }; + tricolore = derive2 { name="tricolore"; version="1.2.4"; sha256="1vnzw1nnnpq5w52y5dr9lygbpyys171vpxnmnd0yp1pk9mjxays7"; depends=[assertthat ggplot2 ggtern rlang shiny]; }; triebeard = derive2 { name="triebeard"; version="0.4.1"; sha256="1xz0xwq9c986as6g7z2g1ycvw1ryh4g89ygldvakpr21cgpjybqr"; depends=[Rcpp]; }; triggerstrategy = derive2 { name="triggerstrategy"; version="1.2.0"; sha256="1p3x693nc9sx33s8z5v8gmdv3sn1mh1gbm0pdcjriklss3d9d28b"; depends=[GA ldbounds mvtnorm nleqslv]; }; trigpoints = derive2 { name="trigpoints"; version="1.0.0"; sha256="1hckjh2gb0fvd2c8x6mj0idpk3im7b831y7mbli1hqhry6qqdw15"; depends=[sf tibble]; }; @@ -19717,9 +20022,9 @@ in with self; { triplesmatch = derive2 { name="triplesmatch"; version="1.0.0"; sha256="1qjwnyijk3yf9dl18baww806xz2w1jhxcnaw3nlb27g24m28j2dq"; depends=[MASS optmatch rcbalance rlang rlemon]; }; triplot = derive2 { name="triplot"; version="1.3.0"; sha256="1apmdpxdnnmjyi7gcrjrqw44iqphr84nbgw0nfxcspzjgxhc81l1"; depends=[DALEX ggdendro ggplot2 glmnet patchwork]; }; tripsAndDipR = derive2 { name="tripsAndDipR"; version="0.1.0"; sha256="1gm96fxgql9y08w177nyxw0bahyafcs75maz743a9hfb0gjixvy2"; depends=[]; }; - triptych = derive2 { name="triptych"; version="0.1.2"; sha256="171wf85hjjdqv5m78galsrqwjri6j62l0kh5ixgrjvglwvlz15iz"; depends=[class cpp11 dplyr geomtextpath ggplot2 ggrepel monotone patchwork pROC purrr rlang scales tibble tidyr tidyselect vctrs]; }; + triptych = derive2 { name="triptych"; version="0.1.3"; sha256="1ggifvzqa5ifa66mhg0bsv47g54nbih9zg4sbm6m9483wvnsxhhs"; depends=[class cpp11 dplyr geomtextpath ggplot2 ggrepel monotone patchwork pROC purrr rlang scales tibble tidyr tidyselect vctrs]; }; triversity = derive2 { name="triversity"; version="1.0"; sha256="1bar2bpy8jvj91jmzzdwy6rlvirsbxrzqnx4r825irqhc69gc53r"; depends=[data_tree Matrix]; }; - troopdata = derive2 { name="troopdata"; version="0.1.5"; sha256="0s86j75jzinrwn1p5z9l13srzhy55mj3hcnbjr89ia1m6kgih6dc"; depends=[dplyr magrittr rlang tibble]; }; + troopdata = derive2 { name="troopdata"; version="1.0.0"; sha256="0y7rkb2lvv8yy3sl4r0zha873basfbh51gpwcxcqb1ihrn8i8c4c"; depends=[dplyr magrittr rlang]; }; tropAlgebra = derive2 { name="tropAlgebra"; version="0.1.1"; sha256="1idvhxhw2f6z8iq0nfdj6jmzy8913vid84rvln6rx2dkzw3s9wnl"; depends=[]; }; trotter = derive2 { name="trotter"; version="0.6"; sha256="0i8r2f2klkkfnjm7jhvga3gx6m7r97pd73d88004jzlm9ficspgy"; depends=[]; }; trouBBlme4SolveR = derive2 { name="trouBBlme4SolveR"; version="0.1.1"; sha256="0718n2lgwyj8c2cnxs6r6gy41ygv8pl04fnjb07c6jhzr30ndc6l"; depends=[lme4]; }; @@ -19736,6 +20041,7 @@ in with self; { trustOptim = derive2 { name="trustOptim"; version="0.8.7.3"; sha256="11cx90zq9987i7kc86kxbip6c75bmw51shlwq2x9ywhybzk8vxl8"; depends=[Matrix Rcpp RcppEigen]; }; trustedtimestamping = derive2 { name="trustedtimestamping"; version="0.2.6"; sha256="1rx7ypy331mq5ni5hxhqcfnicvwdgg9j2pm3aj097a5hhigibdrq"; depends=[digest httr jsonlite]; }; tryCatchLog = derive2 { name="tryCatchLog"; version="1.3.1"; sha256="0k40a48qzwmardjnkf0h5s5zryivzvdanz61kxdqdfqlil19ma0d"; depends=[]; }; + tryr = derive2 { name="tryr"; version="0.1.1"; sha256="0al9kf7jp2c4rp2djgk3qdhvfa9ky5gmmxcw6rc4ifh2xi9sk5gz"; depends=[]; }; tsBSS = derive2 { name="tsBSS"; version="1.0.0"; sha256="04nsbifc6zkilqifj6iwc0vf2z84y8wcbf8pndgkzi039kk6c385"; depends=[boot BSSprep forecast ICtest JADE Rcpp RcppArmadillo xts zoo]; }; tsDyn = derive2 { name="tsDyn"; version="11.0.4.1"; sha256="04w7kf66q9bspyh62g8r9xzcb6mj6nd11za63b0h5jyj6rv6kbrq"; depends=[foreach forecast MASS Matrix mgcv mnormt nnet tseries tseriesChaos urca vars]; }; tsLSTMx = derive2 { name="tsLSTMx"; version="0.1.0"; sha256="12ghcqb85adws6z3587z2pb0bavqf5xs1bvap6g74pw34kzgjyhi"; depends=[AllMetrics keras reticulate tensorflow]; }; @@ -19752,10 +20058,10 @@ in with self; { tsdecomp = derive2 { name="tsdecomp"; version="0.2"; sha256="1wy37gjp49dr60s4zhwv19iv3mzr1fjz5yilqmqgy78j5d45ns15"; depends=[]; }; tsdf = derive2 { name="tsdf"; version="1.1-8"; sha256="00s0aiis88611xsq9px61f9gwprp803wcvi5milvc7qckrh1kw0z"; depends=[]; }; tsdisagg2 = derive2 { name="tsdisagg2"; version="0.1.0"; sha256="1vjypf9d4rdprpgxfsgpccn412kvar59v341ridq2hcdp7hfb70s"; depends=[]; }; - tsdistributions = derive2 { name="tsdistributions"; version="1.0.0"; sha256="0nvaf2p02kyvcq63mbpi2534j9jd1nxvxacv89d6m6cy61fbkran"; depends=[data_table future future_apply GeneralizedHyperbolic progressr RcppEigen Rsolnp sandwich SkewHyperbolic TMB tsmethods zoo]; }; + tsdistributions = derive2 { name="tsdistributions"; version="1.0.1"; sha256="0xhia2w6s0b2zfva2pj58n8vj666ffmmgcbdid9lbgcsy09fsf01"; depends=[data_table future future_apply GeneralizedHyperbolic KernSmooth mev progressr RcppEigen Rdpack Rsolnp sandwich SkewHyperbolic TMB tsmethods zoo]; }; tsensembler = derive2 { name="tsensembler"; version="0.1.0"; sha256="0amb3dn96hdgy5a0j6s43mf82cdjwbz8dhz3yrjlr07nknxzirzi"; depends=[Cubist doParallel earth foreach gbm glmnet kernlab monmlp pls ranger RcppRoll softImpute xgboost xts zoo]; }; tsentiment = derive2 { name="tsentiment"; version="1.0.5"; sha256="1sa1xy1v7p166r3sc3mg66zzw72n8vsy8q636knhyl71zzbvacsw"; depends=[dplyr ggplot2 httr reshape2 stringi syuzhet tibble tidytext wordcloud]; }; - tseries = derive2 { name="tseries"; version="0.10-55"; sha256="03jb2ij4jyhrbygi0gha549vq262kx1ffjmy12rf0gak0qmq5iwp"; depends=[jsonlite quadprog quantmod zoo]; }; + tseries = derive2 { name="tseries"; version="0.10-56"; sha256="1s7sz95j6mm4708s3hffrnfkmdjgj43gba07wr6v24fg9xygq7m8"; depends=[jsonlite quadprog quantmod zoo]; }; tseriesChaos = derive2 { name="tseriesChaos"; version="0.1-13.1"; sha256="0qfrrzd0h8n9zp7wj5fl88wkiv22fs5zy8x509g316j0avm5zjr3"; depends=[deSolve]; }; tseriesEntropy = derive2 { name="tseriesEntropy"; version="0.7-2"; sha256="0zlyzda09q7r5iwfsyrv0qr6xpm1rcwjril85hm3mgb2c55c6v9r"; depends=[cubature ks]; }; tseriesTARMA = derive2 { name="tseriesTARMA"; version="0.3-4"; sha256="00ch7dg9fia7yh9q502wndi72nhz5ywqhhla9qgpgg08sfj2414f"; depends=[lbfgsb3c mathjaxr Matrix Rdpack Rsolnp rugarch zoo]; }; @@ -19763,6 +20069,7 @@ in with self; { tsfgrnn = derive2 { name="tsfgrnn"; version="1.0.5"; sha256="0pbscnz2mr7nnxvgcs7sw3awq78p5r4h0nwwycn6fi7wq7ngpd92"; depends=[ggplot2 Rcpp]; }; tsfknn = derive2 { name="tsfknn"; version="0.6.0"; sha256="1yw0k2ivx31b4170wf93vvha4jpkapg4sg5j59igiayf750x1j6h"; depends=[ggplot2 Rcpp]; }; tsfngm = derive2 { name="tsfngm"; version="0.1.0"; sha256="1wx1imbvnc2bjvfal45zhgpz296fiydqffb0rk428xpjgp2dj6p7"; depends=[]; }; + tsgarch = derive2 { name="tsgarch"; version="1.0.2"; sha256="1hlbz6iycq9fvmcrdf238a48dl9hdpdrvxa5vfz1j28061r3sp8f"; depends=[data_table flextable future future_apply lubridate nloptr numDeriv progressr Rcpp RcppArmadillo RcppEigen Rdpack sandwich TMB tsdistributions tsmethods xts zoo]; }; tsiR = derive2 { name="tsiR"; version="0.4.3"; sha256="0xzcfdad1z8336wnsrk9sy21psd898wwkdkndq7dshqwp2rj2kxl"; depends=[ggplot2 kernlab reshape2]; }; tsibble = derive2 { name="tsibble"; version="1.1.4"; sha256="17zdlrp9rfh61q23k21yqzs6q7c0g5r93cxxqa3ig5ibmvhsfsrl"; depends=[anytime dplyr ellipsis generics lifecycle lubridate rlang tibble tidyselect vctrs]; }; tsibbledata = derive2 { name="tsibbledata"; version="0.4.1"; sha256="1wh0i5rm5cp4f9hqgxjlhbsj3ag6wgdq38fpzc0gdsl84m6xvwnh"; depends=[rappdirs tsibble vctrs]; }; @@ -19775,11 +20082,12 @@ in with self; { tsnet = derive2 { name="tsnet"; version="0.1.0"; sha256="14wy4mfzxkigdm3abfybijqicfqxl0gfbf72asadwipaqyw91nf6"; depends=[BH cowplot dplyr ggdist ggokabeito ggplot2 posterior Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders tidyr]; }; tsoutliers = derive2 { name="tsoutliers"; version="0.6-10"; sha256="0q05bv2y1zrjbzrwrnqs09fi0879lwasjmsy38h6f7l6v2y317hf"; depends=[forecast]; }; tspmeta = derive2 { name="tspmeta"; version="1.2"; sha256="028jbbd0pwpbjq4r6jcc1h0p7c4djcb9d2mvgzw1rmpphaxjvrkd"; depends=[BBmisc checkmate fpc ggplot2 MASS splancs stringr TSP vegan]; }; - tspredit = derive2 { name="tspredit"; version="1.0.747"; sha256="0hsh3r2r4g63fjlsasw9iwddxfr5xbghi17kc3arn85jkwr6k9yz"; depends=[daltoolbox DescTools doBy dplyr forecast FSelector glmnet KFAS leaps mFilter smotefamily]; }; + tspredit = derive2 { name="tspredit"; version="1.0.767"; sha256="0gxsbhigq0qxiw6kx4p7wgqjx7c09qj03w7j6600p2jzaqz959zj"; depends=[daltoolbox DescTools dplyr forecast KFAS mFilter]; }; tsqn = derive2 { name="tsqn"; version="1.0.0"; sha256="1iv1wwa6a9824dbgfk5a609szppc3a8j250z74hb8csjvwwx9qq9"; depends=[fracdiff MASS robustbase]; }; tsriadditive = derive2 { name="tsriadditive"; version="1.0.0"; sha256="1zk97vz5ag6j0r8w3b5kgl2cx628jmdy73spmwmsw7x5yc24901d"; depends=[survival]; }; tsrobprep = derive2 { name="tsrobprep"; version="0.3.2"; sha256="0y7h8kh721r859b7y5vxh4q7dmjlx50qcc6pib204x3hhzv1yyrc"; depends=[glmnet MASS Matrix mclust quantreg Rdpack textTinyR zoo]; }; tssim = derive2 { name="tssim"; version="0.1.7"; sha256="154snb0npy8zbkspp475nv9rvv1ls6rbgxz3jr152j79vsiis3ng"; depends=[dsa timeDate tsbox xts zoo]; }; + tstests = derive2 { name="tstests"; version="1.0.0"; sha256="00gjmvg1b7v2cdrv95l9ic9j50wch8y23qxkiqmrp1nznjjicpsy"; depends=[car data_table flextable ks Rdpack tsmethods xts]; }; tstools = derive2 { name="tstools"; version="0.4.3"; sha256="1wwxbc27yspal4yhck0pw5fz99nck0jdd6hrry90957zyxshyrw7"; depends=[data_table jsonlite xts yaml zoo]; }; tsutils = derive2 { name="tsutils"; version="0.9.4"; sha256="1jf37asxg4nfm1jhf6q6fjs8dljlqs1r57kr4q38dnz11hz1jsm4"; depends=[forecast MAPA plotrix RColorBrewer]; }; tsvio = derive2 { name="tsvio"; version="1.0.6"; sha256="0x1b5wf5n5ljx377s1mgrm1ym6wvcvpq1brrxmfv179rhlm2ifzw"; depends=[]; }; @@ -19792,8 +20100,8 @@ in with self; { ttbbeer = derive2 { name="ttbbeer"; version="1.1.0"; sha256="1azffcizm3460kxvrxxkilc6qxspyi247x8drrw5ywfichwhmdhc"; depends=[]; }; ttcg = derive2 { name="ttcg"; version="1.0.1"; sha256="1kha6jp89r8qx5rycwlcl1dprw33j71yng03k9l7q3b7d4lz4bg5"; depends=[numDeriv]; }; ttdo = derive2 { name="ttdo"; version="0.0.9"; sha256="0i0qw4zxi1cbqzdfxfdrm2vfppiddgsyf795wny6hz03fl416xkp"; depends=[diffobj tinytest]; }; - tth = derive2 { name="tth"; version="4.12-0-1"; sha256="0sdk519sx8h2l0ggddkwlnh9llrx4fzmvwzdjrbi2bg8zv2y30x1"; depends=[]; }; - ttservice = derive2 { name="ttservice"; version="0.4.0"; sha256="1qqf6vrp9bx72wzy4z6js2svglix3xpn367k5rh4kqi7k860g8fp"; depends=[dplyr Matrix plotly]; }; + tth = derive2 { name="tth"; version="4.16-0"; sha256="1yddgyfa6wnvjr2qna86ld4x49mqa2rhkin9rzs6ghl7010l6czf"; depends=[]; }; + ttservice = derive2 { name="ttservice"; version="0.4.1"; sha256="1r0prv3p3xlcfn16bxjyvkr255rsaf5m26c394qxc78y6qf6wrbd"; depends=[dplyr Matrix plotly]; }; ttt = derive2 { name="ttt"; version="1.0"; sha256="12bjhp78162v5y64qxfccaqxgwdqhmd3iwjda6pi7j6zqmy9p0gm"; depends=[Formula htmltools knitr]; }; tttplot = derive2 { name="tttplot"; version="1.1.1"; sha256="0rmgp1888y07w0h8kwq1azpr6bysjq4pyjf6ygpra75jj4563wx9"; depends=[]; }; ttutils = derive2 { name="ttutils"; version="1.0-1.1"; sha256="01lmnlyj6pn2r73hhr57r9c83h3pw9x506h4dj09wmlgrzv4w30a"; depends=[]; }; @@ -19804,19 +20112,19 @@ in with self; { tufterhandout = derive2 { name="tufterhandout"; version="1.2.1"; sha256="04fvvbx69a28nk7i4wz5ynamz1yvsa2ibz542r1xaq1ikk0ywqbw"; depends=[knitr rmarkdown]; }; tukeytrend = derive2 { name="tukeytrend"; version="0.7"; sha256="15j7g0drb92rpxq7d0jl9h0hxpi9pbgpvfcxaicrcgypxap3721q"; depends=[lme4 Matrix mgcv multcomp nlme pbkrtest]; }; tumgr = derive2 { name="tumgr"; version="0.0.4"; sha256="1ylfmrsg177g75l2scjpgw6v4dpz62r7cy89pql9zd5zqy167xqj"; depends=[minpack_lm]; }; - tune = derive2 { name="tune"; version="1.2.0"; sha256="1z5id7mp9yknxz4lbb0304wn47ii61zmds3grffc4q84v3d9gb76"; depends=[cli dials doFuture dplyr foreach future generics ggplot2 glue GPfit hardhat lifecycle parsnip purrr recipes rlang rsample tibble tidyr tidyselect vctrs withr workflows yardstick]; }; - tuneR = derive2 { name="tuneR"; version="1.4.6"; sha256="1l270rk1m3967fvgpshrbd71l7ns74wdhivbmavayk68dnsiyi65"; depends=[signal]; }; + tune = derive2 { name="tune"; version="1.2.1"; sha256="1qb4ncadq10pzy8xhkpgg06raahbv6n8002wdjdh4jlv73hsk6ki"; depends=[cli dials doFuture dplyr foreach future generics ggplot2 glue GPfit hardhat lifecycle parsnip purrr recipes rlang rsample tibble tidyr tidyselect vctrs withr workflows yardstick]; }; + tuneR = derive2 { name="tuneR"; version="1.4.7"; sha256="02lnnsh2r22qg54ygdjjpd6986gqr5r3qbzxxrz34lq98jh58h9n"; depends=[signal]; }; tuneRanger = derive2 { name="tuneRanger"; version="0.7"; sha256="17hsqwg4h2pjns4bx3yjrkml8yn1vdxarf8lc4g9d4z01k4m7jk8"; depends=[BBmisc DiceKriging lhs mlr mlrMBO ParamHelpers ranger smoof]; }; tuple = derive2 { name="tuple"; version="0.4-02"; sha256="0fm8fsdfiwknjpc20ivi5m5b19r9scdxhzij70l8qi3ixw1f0rnk"; depends=[]; }; turboEM = derive2 { name="turboEM"; version="2021.1"; sha256="17j308qla2680k0j8cf2c4v1jlsm21z93zglncmw3n0isa7cwjly"; depends=[doParallel foreach iterators numDeriv quantreg]; }; - turkeyelections = derive2 { name="turkeyelections"; version="0.1.1"; sha256="07plalp9f7vxb49h1b0waqa6dxgrami4bw3i34mp0wx563mcs7sl"; depends=[dplyr ggparliament ggplot2 stringr]; }; - turner = derive2 { name="turner"; version="0.1.7"; sha256="1xckb750hbfmzhvabj0lzrsscib7g187b44ag831z58zvawwh772"; depends=[tester]; }; - tutorial_helpers = derive2 { name="tutorial.helpers"; version="0.2.6"; sha256="1pqw8gw29gjlsvpiv0n4a0gjcf1d0pdarv0kjxpb495cibl2m09y"; depends=[dplyr gridExtra learnr parsermd purrr readr rmarkdown rstudioapi shiny stringr tibble]; }; + turkeyelections = derive2 { name="turkeyelections"; version="0.1.2"; sha256="0jngbrz147h3adlbvz6dzr8194g1n27iixpnnhllvip7jc19lb85"; depends=[colorRamp2 dplyr ggplot2 ggpol stringr]; }; + turner = derive2 { name="turner"; version="0.1.9"; sha256="0qcf018k7kz84hpwp3i3fv270kjb9id1dh8rqcvnmaqn1jy829hq"; depends=[tester]; }; + tutorial_helpers = derive2 { name="tutorial.helpers"; version="0.2.7"; sha256="0r8dadwd6gcvbcyy7kj0l0n8rmbmjfjg3d31pjlfmmgbv0ax21hc"; depends=[dplyr gridExtra learnr parsermd purrr readr rmarkdown rstudioapi shiny stringr tibble]; }; tv = derive2 { name="tv"; version="2.0.2"; sha256="152yigfmfwwsykh8v2y86cl1ybz4p17msxcva8iiqg0ijnhrxhg2"; depends=[dplyr lubridate magrittr rlang]; }; tvR = derive2 { name="tvR"; version="0.3.2"; sha256="1i20z09f714fyn3ipcn9i5g4dx7cyjfkyjqzyqzqapkg0m9ny91m"; depends=[Matrix Rcpp RcppArmadillo Rdpack]; }; tvReg = derive2 { name="tvReg"; version="0.5.9"; sha256="0viv485l2b93j72274h9m3dkrm2ah0kn37pgbxby3ajg2gi86bh9"; depends=[bvarsv MASS Matrix plm systemfit vars]; }; tvem = derive2 { name="tvem"; version="1.4.1"; sha256="09kcz30nh2yaj1cvldvksx6sjhh1ny2ba0n16k34np8ar4ppcb91"; depends=[mgcv]; }; - tvgarch = derive2 { name="tvgarch"; version="2.4.1"; sha256="17cnk855c4y5bxxnhhi05vjrppw5bbarnrhkasza3ygbnm77cmsd"; depends=[garchx numDeriv zoo]; }; + tvgarch = derive2 { name="tvgarch"; version="2.4.2"; sha256="1f7ylwq3988kqd765768b3qcwk6mrrlhjlfq10yifn3040wpgx8w"; depends=[garchx numDeriv zoo]; }; tvgeom = derive2 { name="tvgeom"; version="1.0.1"; sha256="1lr2vqgj5jfhzavwd43wcchhbicmf4dqjvyf66rvnjkw3jaig8dm"; depends=[]; }; tvm = derive2 { name="tvm"; version="0.5.2"; sha256="0kswqml9h12mvs6q48vibq8qd3l9dd9nxi8lmp90cxd4hkmg6vgw"; depends=[ggplot2 reshape2 scales]; }; tvmComp = derive2 { name="tvmComp"; version="1.0.2"; sha256="1q5c3ahdjjz4h19pwq0dpasv87mzbyqs0hadlfx7mpmncdgyqcqq"; depends=[Rdpack]; }; @@ -19859,7 +20167,7 @@ in with self; { uGMAR = derive2 { name="uGMAR"; version="3.4.5"; sha256="01zs919b24qb102qf9m19x0zzyg7yx8v8w674awzfk4lvm27d2aq"; depends=[Brobdingnag gsl pbapply]; }; uHMM = derive2 { name="uHMM"; version="1.0"; sha256="1516ipadxi7rc1dbinr5rva2fbcr5i2zg3rlli5wy7r6naf8fzzl"; depends=[chron class cluster clValid corrplot FactoMineR HMM tcltk2 tkrplot]; }; uaparserjs = derive2 { name="uaparserjs"; version="0.3.5"; sha256="0v24smgsz1p2wa23mc2llx7dycwmgf7zyxdhwxgwplabpmy3xzhl"; depends=[progress V8]; }; - uavRmp = derive2 { name="uavRmp"; version="0.6.2"; sha256="0jv0ls8wbxciv6lhr7qvzarg4s3gckkc1n4w833sfpr0sk4gakaj"; depends=[brew data_table exifr geosphere jsonlite link2GI log4r rlist sf sp zoo]; }; + uavRmp = derive2 { name="uavRmp"; version="0.7"; sha256="1bv5979x3c3vbls40vih83mm29cq7yjv37w544cg63sml2k2bj3v"; depends=[brew concaveman data_table dplyr exifr geosphere jsonlite link2GI log4r rlist sf sp spatialEco terra xfun zoo]; }; ubiquity = derive2 { name="ubiquity"; version="2.0.3"; sha256="1w1agdarsh45zf66cbczvippzk3f0ns5dajfbr1181j274f39rnh"; depends=[cli deSolve digest doParallel dplyr flextable foreach ggplot2 knitr magrittr MASS onbrand optimx PKNCA pso readxl rhandsontable rmarkdown scales shiny stringr]; }; ubms = derive2 { name="ubms"; version="1.2.6"; sha256="10jr2nb8pq0rxx1h0zci4zybbj108maa5kdzgf9bj87pzsrxhda7"; depends=[BH ggplot2 gridExtra lme4 loo Matrix pbapply Rcpp RcppArmadillo RcppEigen RcppParallel rlang RSpectra rstan rstantools StanHeaders unmarked]; }; uci = derive2 { name="uci"; version="0.3.0"; sha256="0bqyj69xplr8hbc1b9rpjxvzmnhwkqy2xdyd4my53niq2gm55750"; depends=[checkmate cppRouting data_table fields furrr future pbapply sf spdep]; }; @@ -19881,12 +20189,13 @@ in with self; { ukgasapi = derive2 { name="ukgasapi"; version="0.21"; sha256="1acl04bm8f2hgi26mpmzcwp44yv9zxarzw4r4k20b367k8g9rh8a"; depends=[httr XML]; }; uklr = derive2 { name="uklr"; version="1.0.2"; sha256="1x5lfzb0a64k84dscdj61kcibww8mizf9w62anmb207f8dggj7lg"; depends=[curl httr jsonlite tibble]; }; ukpolice = derive2 { name="ukpolice"; version="0.2.2"; sha256="1dwwixhiarlpdss7rhiamzcsl1k2yphgmjzh7wn2my4vxj06817l"; depends=[httr jsonlite purrr snakecase tibble]; }; + ulid = derive2 { name="ulid"; version="0.4.0"; sha256="1g227bslfb4ffm2s0s6yblss4449kkpgq7cndcd5nmg5h48dxh4q"; depends=[Rcpp]; }; ulrb = derive2 { name="ulrb"; version="0.1.3"; sha256="0xwlj8cc7y4p51r0p46bz1ac7klrl2b9h7cr704d0cpvcwy11y7f"; depends=[cluster clusterSim dplyr ggplot2 gridExtra purrr rlang tidyr]; }; umap = derive2 { name="umap"; version="0.2.10.0"; sha256="1abfddi0rq75b7nlx6550fx9nrqa62vb92xyp05ris25jf98ciwd"; depends=[Matrix openssl Rcpp reticulate RSpectra]; }; umbridge = derive2 { name="umbridge"; version="1.0"; sha256="0p49mwi8qy90vb5xbv6w97sjv373cmp26vkk5y1nacqx6g6yvc5f"; depends=[httr2 jsonlite magrittr]; }; umiAnalyzer = derive2 { name="umiAnalyzer"; version="1.0.0"; sha256="147x48mr9mj0njwbz39876795rninvk89zm9immkppdm4s5g1ghf"; depends=[BiocManager dplyr DT forcats ggplot2 gridExtra magrittr pheatmap plotly readr Rsamtools scales shiny shinydashboard shinyFiles shinyWidgets stringr tibble tidyr viridis]; }; ump = derive2 { name="ump"; version="0.5-8"; sha256="1sg226caq9y41cwl7wr5s9z3bpq2j5p6rj6fy2pasbzimgzw0byx"; depends=[]; }; - umx = derive2 { name="umx"; version="4.19.0"; sha256="0cp482g025ivhkxsj9zdyp3abcn4nyiy5psh0w4vvspgb5lvghs5"; depends=[cowplot DiagrammeR foreign gert ggplot2 hrbrthemes kableExtra knitr lavaan MASS Matrix MuMIn mvtnorm nlme OpenMx openxlsx paran polycor psych psychTools pwr R2HTML RCurl rmarkdown scales xtable]; }; + umx = derive2 { name="umx"; version="4.20.0"; sha256="1b0xkwy9b8sq686smjjl08wmvijnkvm0rh3gy31lamcbw7k0b60w"; depends=[cowplot DiagrammeR foreign gert ggplot2 hrbrthemes kableExtra knitr lavaan MASS Matrix MuMIn mvtnorm nlme OpenMx openxlsx paran polycor psych psychTools pwr R2HTML RCurl rmarkdown scales xtable]; }; unbalhaar = derive2 { name="unbalhaar"; version="2.1"; sha256="0fgnvl9ammawgm5nf2icw64yzivqw7sl07dpvrsb5rypvrm8d040"; depends=[]; }; uncertainty = derive2 { name="uncertainty"; version="0.2.0"; sha256="1mq14ny7l3gy3wjsqijnm37azavyapxszjnckd861h4hgcpdcdjz"; depends=[mvtnorm triangle]; }; uncmbb = derive2 { name="uncmbb"; version="0.2.2"; sha256="0szlz52p0ywl8526mhm0i0pk1vx72kc3474cx0w47xxig83a1j9b"; depends=[dplyr rlang]; }; @@ -19895,24 +20204,23 @@ in with self; { unglue = derive2 { name="unglue"; version="0.1.0"; sha256="0w8ld4xllx0lj1jz8i2sj92f8136hlwri1d8ldpg1ymxj7aw93vg"; depends=[]; }; ungroup = derive2 { name="ungroup"; version="1.4.4"; sha256="12dqhysz26l1jrnf4sz43hdpsxch8g1iah7cxsx7rcac42lhzwdk"; depends=[Matrix pbapply Rcpp RcppEigen Rdpack]; }; unhcrthemes = derive2 { name="unhcrthemes"; version="0.6.2"; sha256="1qi3clng771mzbaa4j6a80wn6am0fl2gix2xdmy3d6ygrrgkgd7r"; depends=[extrafont ggplot2 ggrepel ggtext scales systemfonts]; }; - unheadr = derive2 { name="unheadr"; version="0.3.3"; sha256="1870nn28d7yf9ag31hvhvq00jms4fywjddsk3yd645dhvkr4afcs"; depends=[dplyr forcats magrittr readxl rlang stringr tibble tidyr tidyxl]; }; + unheadr = derive2 { name="unheadr"; version="0.4.0"; sha256="1p5dl3906gbaszvny33gj56phqcclnj1c73lmnz6l1b1h5xahyw0"; depends=[dplyr forcats magrittr readxl rlang stringr tibble tidyr tidyxl]; }; uni_survival_tree = derive2 { name="uni.survival.tree"; version="1.5"; sha256="1brkppsk7likpffzz0ykhqxw99qin57zzcjcib2fcdn3n8gpwq7w"; depends=[compound_Cox survival]; }; uniReg = derive2 { name="uniReg"; version="1.1"; sha256="0wjc7pgaisvk26j7grxp2ypsabb5my9wg6c9i5w9zhh5jdx1fdab"; depends=[DoseFinding MASS mvtnorm quadprog SEL]; }; uniah = derive2 { name="uniah"; version="1.2"; sha256="0hv7zgj55am1mlb8vl8k690z641lwsnsxdcvg7zzkhfpj58p7wai"; depends=[ahaz Iso survival]; }; - unicol = derive2 { name="unicol"; version="0.2.0"; sha256="0fxndcj3x60nv934xkxkc10ws7lah5rv8r264inqs1fbhqjrrln6"; depends=[unikn]; }; + unicol = derive2 { name="unicol"; version="0.3.0"; sha256="07fxp7gh8sbvr88b4a0kllqskd88w7xfawj6y6gjkgmhn5ykmxx0"; depends=[unikn]; }; unifDAG = derive2 { name="unifDAG"; version="1.0.4"; sha256="0h620q5cy6x4f7fnf65vq6xjyjk1frc2b0sbia5da2y1ppk4y48a"; depends=[gmp graph]; }; unifed = derive2 { name="unifed"; version="1.1.6"; sha256="0wy2hasgkzw08l50qq30wb62i1q4skc3zccipv8pm911qlldk3sr"; depends=[]; }; unifir = derive2 { name="unifir"; version="0.2.4"; sha256="02d9h1yalha7b7bdsjqpq1xa3gg0spfk42q2wxv1bjsizzbnbq2r"; depends=[glue proceduralnames R6]; }; uniformly = derive2 { name="uniformly"; version="0.5.0"; sha256="05zhx5a3ka3xa3h2j2dc17q7alq3zcnahvzbngyrz5ri0q3w1l5l"; depends=[abind pgnorm rgl]; }; - unigd = derive2 { name="unigd"; version="0.1.0"; sha256="0519v2p4jzfpilai022blvyxi56kfdidafwjpa1g6lnmwmpk4isq"; depends=[cpp11 systemfonts]; }; - unikn = derive2 { name="unikn"; version="0.9.0"; sha256="040wqf8hnbvij8b044q7akzhd9dkb6k4fcv1dfn9cahqpmlgb02l"; depends=[cli ggplot2]; }; + unigd = derive2 { name="unigd"; version="0.1.2"; sha256="0iykjsfi8rjayrb4nhnm8ifdlsaxr7918bk6ackgfj1qz5g33wr7"; depends=[cpp11 systemfonts]; }; + unikn = derive2 { name="unikn"; version="1.0.0"; sha256="1h8d6m1dvck2ps2kqiv2b8i6sw3gm799bimmcq86k93m0515vpbf"; depends=[cli ggplot2]; }; unine = derive2 { name="unine"; version="0.2.0"; sha256="051dk8fss19h4d9815a7994krr1s3n5q0pxq9gir6zns0vvn05pw"; depends=[Rcpp]; }; uniqtag = derive2 { name="uniqtag"; version="1.0.1"; sha256="0vmd5w4p2qvpg6djddl92q9d3c6kiq0rjv6hq6j7x1b1zwqhgfi5"; depends=[]; }; unisensR = derive2 { name="unisensR"; version="0.3.3"; sha256="1pqfb8i3rj64l9hh1bn9mm78wlfqphgrlp7zrydznqy88f4jwgvy"; depends=[hexView vroom XML]; }; uniset = derive2 { name="uniset"; version="0.3.1"; sha256="1lpwsx1l6x186aj7wl5kvfmc5mp4g95p5h69alg8dn1sns84zqjs"; depends=[easycsv]; }; - uniswappeR = derive2 { name="uniswappeR"; version="0.6.1"; sha256="0vsw2jvp3gndjrl7v9fndpaqx4kryf4szsz1si1cx1rxhqvlsf92"; depends=[dplyr ggplot2 ghql jsonlite lubridate patchwork purrr reticulate rlang scales tidyr]; }; unitedR = derive2 { name="unitedR"; version="0.4"; sha256="0h4i814awb8419693jz3x5cyhs2x6y5flmz339bg6ivmg13d9h3s"; depends=[plyr]; }; - unitizer = derive2 { name="unitizer"; version="1.4.20"; sha256="0s2jgvxdlz95ykdz3mwy6l5iry74qyv716d6fz18jxnixcx6vyss"; depends=[crayon diffobj]; }; + unitizer = derive2 { name="unitizer"; version="1.4.21"; sha256="0xr9xf5ams0j9vxgn1p0gm9yzq4g2il9q8qqlsic5v75gp3nj2g1"; depends=[crayon diffobj]; }; unitquantreg = derive2 { name="unitquantreg"; version="0.0.6"; sha256="087d4v5fpiznl37frjg6c01bfgvx3vx0yw8cnbm3wsdj9dak94ym"; depends=[Formula MASS numDeriv optimx quantreg Rcpp]; }; units = derive2 { name="units"; version="0.8-5"; sha256="1c836qazrs8z9p1xkcfl9gl882i8q7qf2g73l483w18bfspq0pnr"; depends=[Rcpp]; }; unittest = derive2 { name="unittest"; version="1.6-1"; sha256="1y035zj23am2d6cmfz93nyflwwivfy5lq4m5d17yb6s1lir057pn"; depends=[]; }; @@ -19920,7 +20228,7 @@ in with self; { unival = derive2 { name="unival"; version="1.1.0"; sha256="0j7fl77my2273k72s8k9v5pcb85swxfipjxmk4vw487i7aq8b1nq"; depends=[psych]; }; univariateML = derive2 { name="univariateML"; version="1.1.1"; sha256="0a4h19hmw0k2x5yqs92xp48r2srycv4sax97p7gci8hahjw8qzdf"; depends=[actuar assertthat extraDistr fGarch logitnorm nakagami tibble]; }; universals = derive2 { name="universals"; version="0.0.5"; sha256="1038x1ymzyiim7gdz09hrs8i0qdzya0p0c5l7y3kgw1a4if2zhmj"; depends=[]; }; - unix = derive2 { name="unix"; version="1.5.7"; sha256="11h8z2k2p42kjj76wx4gj9ghgd5z0gc0lxs8h6y1ikprgy5xaw32"; depends=[]; }; + unix = derive2 { name="unix"; version="1.5.8"; sha256="0jjy4vhxvyd7i85g50xz392m7blqai8crfrnyf7kbgzkbibr7jb0"; depends=[]; }; unjoin = derive2 { name="unjoin"; version="0.1.0"; sha256="1hp9fxkb59z0cpnwxpaf5whglrljg2nrmsygdb98klxsama9gr5z"; depends=[dplyr rlang tibble]; }; unmarked = derive2 { name="unmarked"; version="1.4.1"; sha256="1ishwzqkkvin7vralpxnb2fdc75gvsxz1l5b9902y4h0mm4749qw"; depends=[lattice lme4 MASS Matrix Rcpp RcppArmadillo RcppEigen TMB]; }; unmconf = derive2 { name="unmconf"; version="0.1.0"; sha256="1cs9kjyq4s6s48ck1wg7piy9r9f6s27kiawzpv6mb514z09gvgr7"; depends=[glue janitor rjags]; }; @@ -19944,7 +20252,7 @@ in with self; { uptimeRobot = derive2 { name="uptimeRobot"; version="1.0.0"; sha256="1sbr0vs6jqcyxjbs7q45bsfdnp3bc59phw0h3fwajqq1cxjgzdww"; depends=[plyr RCurl rjson]; }; ura = derive2 { name="ura"; version="1.0.0"; sha256="18gs49hcmii951f995ch1sbk69lpf458halff539l8birv26q70d"; depends=[dplyr irr magrittr rlang tibble tidyr]; }; urbin = derive2 { name="urbin"; version="0.1-12"; sha256="18zskhpcngpw0zanya88l8znhbac5f7a89kq231w59yml9ll7y52"; depends=[]; }; - urca = derive2 { name="urca"; version="1.3-3"; sha256="1wg9f691pif59xds43gnnw77mmzc9xpnhhvaksk2b0szffvaifj3"; depends=[nlme]; }; + urca = derive2 { name="urca"; version="1.3-4"; sha256="05nb1an5a8r0w6gca6cf40nws2v4hxhznz8kyfm7q7hz0kjnqggy"; depends=[nlme]; }; urlchecker = derive2 { name="urlchecker"; version="1.0.1"; sha256="06034lb94krbzawqg5xklwcksvyyzl3qy355f66baj5pw7dms5k2"; depends=[cli curl xml2]; }; urlshorteneR = derive2 { name="urlshorteneR"; version="1.5.7"; sha256="0zfvcwcy2ykvkbnqgxhzxf99shcby81cx8fjbmy6b07rj9407arj"; depends=[assertthat cli clipr httr jsonlite lubridate miniUI shiny stringr]; }; urltools = derive2 { name="urltools"; version="1.7.3"; sha256="04x3my655dd287cbsszbnf75q0swmjlxxrblcsay7a8n3df3a830"; depends=[Rcpp triebeard]; }; @@ -19955,10 +20263,10 @@ in with self; { uscoauditlog = derive2 { name="uscoauditlog"; version="1.0.3"; sha256="156by8lans2jk8kjll88ljc6z5idgvqwkvrgdwjkr4l4xnsz0sif"; depends=[openxlsx readxl stringr]; }; usdampr = derive2 { name="usdampr"; version="1.0.1"; sha256="0x84hzsylg22jhvhn4xhkzv4g8j17g73cpj274n7f8cwzcmpj9sx"; depends=[dplyr httr jsonlite tidyr]; }; usdarnass = derive2 { name="usdarnass"; version="0.1.0"; sha256="10fh9anpmbb7i70q3hjxbplrkqa1q86zgh8nldsf2i526p62hpm1"; depends=[httr jsonlite readr]; }; - usdata = derive2 { name="usdata"; version="0.2.0"; sha256="1gnd662v6vcmjvj18c1p61q8lxahkyxnk5dbvf26j6z4jvbhk975"; depends=[tibble]; }; + usdata = derive2 { name="usdata"; version="0.3.1"; sha256="0b6q733l5mrkdbxi9h9gpzz19pmr3c5phigrmmp6fas8gnsm3b3c"; depends=[tibble]; }; usdm = derive2 { name="usdm"; version="2.1-7"; sha256="1mr728wmi37kj8m47wjlkc23ifv4rk2fyypyj8rqkpwml5nwjprh"; depends=[raster terra]; }; usedist = derive2 { name="usedist"; version="0.4.0"; sha256="0ddf1zcalbrn293qmr9kdzz3x16fzc4k1bwb1pjmwnspisqfi8kj"; depends=[]; }; - usedthese = derive2 { name="usedthese"; version="0.3.3"; sha256="0frdjwqhxkvhahm22vvcyfr464i3mi10y1ynm3k98zypcgp0lkdx"; depends=[conflicted dplyr highr kableExtra knitr purrr readr rlang stringr tibble tidyr tidyselect withr]; }; + usedthese = derive2 { name="usedthese"; version="0.4.0"; sha256="0qzhydj0i6cg2w8qfgabx10vqfzkfhv7vq8qds6d624c3ayc653h"; depends=[conflicted dplyr highr kableExtra knitr purrr readr rlang stringr tibble tidyr tidyselect withr]; }; useful = derive2 { name="useful"; version="1.2.6.1"; sha256="1gb9hqvbm6pr56dfqlsgz26lan7xargfsm8jpdja18mpgli2gyvc"; depends=[assertthat dplyr ggplot2 magrittr Matrix plyr purrr scales]; }; usefun = derive2 { name="usefun"; version="0.5.0"; sha256="1gpyix8xpn4jmfjrycan6r1qvp7z7mhcngp02fcws6k2hvd7jajr"; depends=[dplyr PRROC]; }; usemodels = derive2 { name="usemodels"; version="0.2.0"; sha256="1dc74v4dnbj532cdphskm0y7sqgq1q4yzq634dbvq2bjpqdzf3si"; depends=[cli clipr dplyr purrr recipes rlang tidyr tune]; }; @@ -19969,7 +20277,7 @@ in with self; { uskewFactors = derive2 { name="uskewFactors"; version="2.0"; sha256="0ndi5987ak8sa7krgiglsibfg0k7z9j8fg47hg1m8ar0sq4r1yj6"; depends=[MASS MCMCpack mvtnorm tmvtnorm]; }; usl = derive2 { name="usl"; version="3.0.3"; sha256="0hql4bc40xa62r465lm4x14yf8dbhsl046i5k8xlq1qr93cw6pnx"; depends=[nlsr]; }; usmap = derive2 { name="usmap"; version="0.7.1"; sha256="04fw3k9h11av7idn8cvcphq7wncgp9pf7mrrdb2a63wirlgd14w6"; depends=[rlang usmapdata]; }; - usmapdata = derive2 { name="usmapdata"; version="0.2.2"; sha256="05v4332q4fjw145m4gbp79pzn4y0m1xskk1qfdgqmrfk5zxysw5w"; depends=[rlang sf]; }; + usmapdata = derive2 { name="usmapdata"; version="0.3.0"; sha256="0bvsx7d7k2fjffmwjwrb0l5qwfga2px1ahaqkbg3bgq0vcpzbx2i"; depends=[rlang sf]; }; ussherR = derive2 { name="ussherR"; version="1.10"; sha256="0awhric6xrhgv4wb9saq7jyikd3h74i6vlq3aqip4i1m9j3ym3k1"; depends=[]; }; ustfd = derive2 { name="ustfd"; version="0.4.4"; sha256="1s4qwfjjy0x9hwhfgxx2f1fjwf09dx6m3z3x3mhmpxxgw5arzn5y"; depends=[dplyr glue httr lubridate purrr readr rlang snakecase stringr tibble]; }; ustyc = derive2 { name="ustyc"; version="1.0.0"; sha256="1267bng2dz3229cbbq47w22i2yq2ydpw26ngqa1nbi3ma6hwqsv4"; depends=[plyr XML]; }; @@ -19984,7 +20292,7 @@ in with self; { utiml = derive2 { name="utiml"; version="0.1.7"; sha256="16l64scyipj7plwyv6whv3h040sgvzxx43jhjxyhrcdci4pqwh94"; depends=[mldr ROCR]; }; uuid = derive2 { name="uuid"; version="1.2-0"; sha256="1z9a4b7hkymkwjq69d00myy5xw8kl9g99f4m2y4lxqqjz0a0lwbk"; depends=[]; }; uwedragon = derive2 { name="uwedragon"; version="0.1.0"; sha256="00rrklym9ms74ad58cbn4xkibp8k5d12kcrnb68x7b27grvgfnqf"; depends=[gtools]; }; - uwot = derive2 { name="uwot"; version="0.1.16"; sha256="0j4f7vnb3mwf6p4nhg2limy7i32qrcj2gxbs8wsq9c6xxpcs0qsz"; depends=[dqrng FNN irlba Matrix Rcpp RcppAnnoy RcppProgress]; }; + uwot = derive2 { name="uwot"; version="0.2.2"; sha256="1lbckamb2hk24qxcvchdfid982cvcz64j9hvdnrx8c4ms91qr4yr"; depends=[dqrng FNN irlba Matrix Rcpp RcppAnnoy RcppProgress RSpectra]; }; uxr = derive2 { name="uxr"; version="0.2.0"; sha256="0zq89xjbmbc4pmzb3w8frnrqafpxbj2s8lhgj7kvmf6k0yqvpyd3"; depends=[cli dplyr huxtable magrittr purrr rlang scales stringr tibble tidyr]; }; vDiveR = derive2 { name="vDiveR"; version="1.2.1"; sha256="1rxygl5micg07p7la9wyvp4dmfwkjdbhqp660mrq6a3drr4x5bj2"; depends=[dplyr DT gghalves ggplot2 ggpubr ggtext gridExtra magrittr maps plyr readr rentrez rlang scales stringr tidyr]; }; vICC = derive2 { name="vICC"; version="1.0.0"; sha256="13lcs7wwj1xfbjf3q7r8ssf00jg5hr1vjp2pyw0r42iz7mx47xjv"; depends=[coda ggplot2 nlme Rdpack rjags]; }; @@ -20008,12 +20316,13 @@ in with self; { validateIt = derive2 { name="validateIt"; version="1.2.1"; sha256="16lcbn853rfnyh8hlvjdxh4abx6wkzsn876fh4mlfkpbcrnmp0ps"; depends=[here pyMTurkR rlang SnowballC tm]; }; validatesuggest = derive2 { name="validatesuggest"; version="0.3.2"; sha256="0pp2zan5ri3bh4ianqdzgylwbq53n7zcd3pxk85rrqx0jxyj3fy9"; depends=[rpart validate whisker]; }; validatetools = derive2 { name="validatetools"; version="0.5.2"; sha256="16pgqk96daz0dgsq2r9kfl6mkc4fffkai0ir1sh2js9v6d5c74k0"; depends=[lpSolveAPI validate]; }; + validmind = derive2 { name="validmind"; version="0.1.1"; sha256="1rj93fgkix3xr1lla286whf06pnhs0n9hz23s85yn9155f7xgndk"; depends=[base64enc dplyr DT glue htmltools plotly reticulate rmarkdown]; }; valmetrics = derive2 { name="valmetrics"; version="1.0.0"; sha256="1fdaljdfvfmqarxdyjs9pcd8ji2z9i379vcxf65jvnhiaqlsms57"; depends=[]; }; valorate = derive2 { name="valorate"; version="1.0-1"; sha256="06vczszpkipsxfs7h6ld33vvxb5ci62rwg3cglwy3lcfifhbnsfi"; depends=[survival]; }; valottery = derive2 { name="valottery"; version="0.0.1"; sha256="0rlv8agm9ng4jcb9ixqifh7kjczvkx7047brq8yf9kg7rb8mzgpz"; depends=[]; }; - valr = derive2 { name="valr"; version="0.7.0"; sha256="038s5n8cbffpb9132rpw7q82cxfzlsc86fcywhv63c8szm5g9nrk"; depends=[broom cli dplyr ggplot2 lifecycle Rcpp readr rlang rtracklayer stringr tibble]; }; - valse = derive2 { name="valse"; version="0.1-0"; sha256="0l3fdsgrmalifcxscjsxsfq07v8vipg0rdw6xh94q7xw5gdfsms0"; depends=[cowplot ggplot2 MASS reshape2]; }; + valr = derive2 { name="valr"; version="0.8.1"; sha256="1pp8naglh26yi8c2p15arx8jkj3jyslzw7j3n5bnzngdpfprk3as"; depends=[broom cli dplyr ggplot2 lifecycle Rcpp readr rlang rtracklayer stringr tibble]; }; valueEQ5D = derive2 { name="valueEQ5D"; version="0.7.2"; sha256="1w1l07s1rfxc1ba6kdq0l1vmb2qib6gmdm91706cmy1azfa92n4d"; depends=[testthat]; }; + valueSetCompare = derive2 { name="valueSetCompare"; version="1.0.0"; sha256="06cb1hz1gp5gzbxbnv7306fyvvczggnaclab9llsbvfnmacbc2k5"; depends=[dplyr eq5dsuite ggplot2 rlang]; }; valuemap = derive2 { name="valuemap"; version="2.0.4"; sha256="1mmk60njwbylgp3nn5lkbkvyw6xkq4gg9k18smjlr47ys6bn6k4p"; depends=[devtools dplyr h3jsr htmltools leaflet sf]; }; vamc = derive2 { name="vamc"; version="0.2.1"; sha256="04kkli4xzf3gzvs215lzch8bl877cdq3awh3mz1k321zhsa1d0jn"; depends=[Rdpack]; }; vampyr = derive2 { name="vampyr"; version="1.1.1"; sha256="137sdv4shmjg1cpndjknrys2jkvyq3p9l11nrdh0bzp9xxc1wkh1"; depends=[corpcor EFA_MRFA fungible GPArotation lavaan moments PCovR psych semPlot]; }; @@ -20021,7 +20330,7 @@ in with self; { vangogh = derive2 { name="vangogh"; version="0.1.1"; sha256="1ny4dgwkk54pgwgg3lwcv8vcdnizlajdck68ihpzh2s1yz4n38bm"; depends=[ggplot2]; }; vannstats = derive2 { name="vannstats"; version="1.3.4.14"; sha256="0fzs2w2rqmdl4a595xi34l7b0sw68yik3yv4mxzqfznwsxiaj8m4"; depends=[dplyr formula_tools gdata ggplot2 ggpubr ggrepel gplots plm purrr rlang rstatix stringr]; }; vanquish = derive2 { name="vanquish"; version="1.0.0"; sha256="01di1j36npl7vnyhgsagvyf6j8bxcw867dwf9dgi7l1328s7lf0l"; depends=[changepoint e1071 ggplot2 VGAM]; }; - vapour = derive2 { name="vapour"; version="0.9.5"; sha256="0m4mqx3chd7w98ky6man0ynvh7i310bw0bk5gg1cs4gm2myzs20p"; depends=[jsonlite nanoarrow Rcpp]; }; + vapour = derive2 { name="vapour"; version="0.10.0"; sha256="18icwn62mpjjrfn7y19svyipq1xziz3vag5vmgp7wxy5i8q5kvch"; depends=[jsonlite Rcpp]; }; varEst = derive2 { name="varEst"; version="0.1.0"; sha256="0i6nsxl5w4zipzrmdvx8plmxr33n405w2qhks3s7zzs3kcys32v6"; depends=[caret glmnet lm_beta SAM]; }; varImp = derive2 { name="varImp"; version="0.4"; sha256="1bxlfqxi8iiv6raawl9668yhlmbak96ahd0ljzwrilnciqbclc2b"; depends=[measures party]; }; varSel = derive2 { name="varSel"; version="0.2"; sha256="05dk2s4lzd4sxrwsfs2yqsj08qrdrfwx1fs07nb9a8sd0in6vlpj"; depends=[]; }; @@ -20038,7 +20347,7 @@ in with self; { variables = derive2 { name="variables"; version="1.1-1"; sha256="13hji43m9nb7rpc8p4bz1qva5jhxwdk16mcprvhb5pxp78w7clyf"; depends=[]; }; varian = derive2 { name="varian"; version="0.2.2"; sha256="0jyw46qx2w19h02mrwv3w3n8qc1n4b3ckm38qly1y4a4w9ib6c2i"; depends=[Formula ggplot2 gridExtra MASS rstan]; }; variantspark = derive2 { name="variantspark"; version="0.1.1"; sha256="13hkp6l64hi7xlll09gin7kdlkqrkn0lggrw8147zy9ivhknhk59"; depends=[sparklyr]; }; - variationalDCM = derive2 { name="variationalDCM"; version="2.0.0"; sha256="0kf9dw8nm728wf825bflvjma49qgdr0sm4zmnnfp1n3xwj2lswxn"; depends=[mvtnorm]; }; + variationalDCM = derive2 { name="variationalDCM"; version="2.0.1"; sha256="1qdbl72a251q3l72d6zjd2ins2q924yvmj394qa7yvb7q2wkw5sw"; depends=[mvtnorm]; }; variosig = derive2 { name="variosig"; version="0.3-1"; sha256="09cxigii0sj78yqd18p4mm9jjqvd1k2cgjy43pxpmqdhia0q2pmv"; depends=[gstat sp testthat]; }; varitas = derive2 { name="varitas"; version="0.0.2"; sha256="16y0fcisdf4pypwqshy9c45v57axa25k8cpp1pr2ij95zycs3g1k"; depends=[assertthat doParallel dplyr foreach magrittr openxlsx stringr tidyr VennDiagram yaml]; }; varjmcm = derive2 { name="varjmcm"; version="0.1.1"; sha256="1xgy3n57pxhv6wrsw9h4dranxbw6hdpm1f9ra3kwlzrpz5c3289x"; depends=[expm jmcm MASS Matrix]; }; @@ -20046,41 +20355,46 @@ in with self; { varrank = derive2 { name="varrank"; version="0.5"; sha256="0f2k18v6ygb5cwd6jri9ws97zq47znrqacv2adkd2yqp3jhwd24f"; depends=[FNN]; }; vars = derive2 { name="vars"; version="1.6-1"; sha256="1i8ldzb44wnlaww8a0k6sgfj1khgah5v445gi45d7vgv68rg0gcv"; depends=[lmtest MASS sandwich strucchange urca]; }; varsExplore = derive2 { name="varsExplore"; version="0.3.0"; sha256="0d18wqq7fbs5ljdphsdgqmv8ab0wrzzykjhf4lqksi7n78s1fa2r"; depends=[dplyr DT glue magrittr purrr rio rstudioapi stringr tidyr]; }; - vartest = derive2 { name="vartest"; version="1.0"; sha256="0syxypmrvv9zd8qv10j1mvksacny3w4bdjm35kyjwp3jgh1rnv9g"; depends=[psych SuppDists]; }; + vartest = derive2 { name="vartest"; version="1.2"; sha256="0bnfyp6qh19nxsl9hzkz7ib9jgbv00vywzqwz6jvvcrxlii7023z"; depends=[psych SuppDists]; }; varycoef = derive2 { name="varycoef"; version="0.3.4"; sha256="1dfych3qhqq4qadizxjgh4lswnm47m2g59gv14c8j349ji94i8qh"; depends=[glmnet lhs mlr mlrMBO optimParallel ParamHelpers pbapply smoof spam]; }; vasicek = derive2 { name="vasicek"; version="0.0.3"; sha256="04g5dfn8zlm8n8sxmdq9xgkf0qbvvznqx27nyan268s5wlnnabd6"; depends=[mvtnorm]; }; vasicekreg = derive2 { name="vasicekreg"; version="1.0.1"; sha256="0hlac3p6mm7x88wdlqc93byx1s2a287kvhwzhz01pz4anap30683"; depends=[gamlss gamlss_dist mvtnorm Rcpp]; }; vatcheckapi = derive2 { name="vatcheckapi"; version="0.1.0"; sha256="1jmfd6qksvw1dnlp4dyb33mr7y9phq9yw0k9qjla0z1jqc0gsnps"; depends=[httr jsonlite]; }; vaultr = derive2 { name="vaultr"; version="1.2.0"; sha256="1dbwr50jsx8m615wdlk437ac23y4dk9iqcihlbnail470hfdq5gw"; depends=[getPass httr jsonlite R6]; }; vaxpmx = derive2 { name="vaxpmx"; version="0.0.3"; sha256="0slbp5iaafwa3bw8mrzraq8yvklvyji1r4bvmvwlmgr99yk2kgk4"; depends=[dplyr MASS]; }; + vcPB = derive2 { name="vcPB"; version="1.1.1"; sha256="11dn0l1w46shw4dqkwad5y91hfs9crkwrj6d1l4n9sc3f71b3zxq"; depends=[KernSmooth lme4 rlist]; }; vccp = derive2 { name="vccp"; version="0.1.1"; sha256="1c0mk46c74kj5y9rfniywbxxmwb2z16szzpq6b2sw8q0qi1cf5ji"; depends=[mosum mvtnorm VineCopula]; }; vcd = derive2 { name="vcd"; version="1.4-12"; sha256="127dkln826ah5ydp3pmd5bqyns9m9m6yrjnmn7fir4r9al8yycf9"; depends=[colorspace lmtest MASS]; }; vcdExtra = derive2 { name="vcdExtra"; version="0.8-5"; sha256="09kpfnyi6q7xn4x6f7i3k8g6f2fdnm7kk81lxjmlhhn36jxc2p2i"; depends=[ca dplyr glue gnm here MASS purrr readxl stringr tidyr vcd]; }; vcfR = derive2 { name="vcfR"; version="1.15.0"; sha256="1yj91cphin232m09wrpj8l27vxblyryh658siakz55hxjs5y85yz"; depends=[ape dplyr magrittr memuse pinfsc50 Rcpp stringr tibble vegan viridisLite]; }; + vcfppR = derive2 { name="vcfppR"; version="0.4.6"; sha256="19qw5x92v15x6cyamigf4fq36h5cw573fp0ln9n2bwsy89px5ghm"; depends=[Rcpp]; }; vcmeta = derive2 { name="vcmeta"; version="1.3.0"; sha256="11z1kfmd2kamkf39gr5ppry1g4pgrpqnyzbc2bgd1yay6yjhl93z"; depends=[ggplot2 mathjaxr Rdpack]; }; vcov = derive2 { name="vcov"; version="0.0.1"; sha256="1w89mr8dk6436bxap28rszajgm9k7sjfqsr1i4p68dlhw8zk4yq1"; depends=[]; }; vcpen = derive2 { name="vcpen"; version="1.9"; sha256="0gg5ln9r7i8rh91pf7789fic4aah22jc259qyg606bax2w57qmi5"; depends=[knitr Rcpp RcppArmadillo]; }; vcr = derive2 { name="vcr"; version="1.2.2"; sha256="0vqq4lwgk9ss3x2vhkmgcymdwfppxjbaycm7pwik70sz9pkdk2d4"; depends=[base64enc crul httr R6 rprojroot urltools webmockr yaml]; }; + vcrpart = derive2 { name="vcrpart"; version="1.0-5"; sha256="1h3p95gmy9lymnhw061awrxfn3xsadcmdr84azyn6c4p2l2qk5b6"; depends=[formula_tools nlme numDeriv partykit rpart sandwich strucchange ucminf zoo]; }; vctrs = derive2 { name="vctrs"; version="0.6.5"; sha256="00p4r1z4xc05m25y0qa7svr67lbypcfqyp2b0ja9asgx90i7s5j3"; depends=[cli glue lifecycle rlang]; }; vctsfr = derive2 { name="vctsfr"; version="0.1.1"; sha256="048bkayjhgy6h47pmy0cld9yzmrg93mk3rv5afpn518c42gjsc69"; depends=[ggplot2 shiny]; }; vcvComp = derive2 { name="vcvComp"; version="1.0.2"; sha256="0mip0v8gv358aadc3b4913dcz27kscx3dv15nwns20pan5jvyhv2"; depends=[]; }; vdar = derive2 { name="vdar"; version="0.1.3-2"; sha256="061ahwf8gyjqs5j9mkqnpn7899mivn4qbygnnzihmv065xj5vpd9"; depends=[compositions]; }; - vdg = derive2 { name="vdg"; version="1.2.2"; sha256="0fdqmvzw6dd18w653kfvnw16489jpsyl1395xffhm8rz1dqkrhj1"; depends=[ggplot2 gridExtra proxy quantreg]; }; + vdg = derive2 { name="vdg"; version="1.2.3"; sha256="00c7ayc791h0lr124a3l1cxrc5wsnbdm47jf5d7ws02xvd1p8fbq"; depends=[ggplot2 gridExtra proxy quantreg]; }; vdiffr = derive2 { name="vdiffr"; version="1.0.7"; sha256="1ljj94swqgs8pvicdrlals6pckm7knwfvxxmmbhhi2zfcxdjwhzd"; depends=[cpp11 diffobj glue htmltools lifecycle rlang testthat xml2]; }; vec2dtransf = derive2 { name="vec2dtransf"; version="1.1.3"; sha256="0sxsbm1q7v58b907xvpppwfljmqm2pyrch2zc82nmb10wfiha8k8"; depends=[sp]; }; veccompare = derive2 { name="veccompare"; version="0.1.0"; sha256="03nyyxvhhwfxxg5w6qflk7q234ipbhj9fd4abcp50sxz3diabch1"; depends=[corrplot gtools pander purrr qgraph reshape2 VennDiagram]; }; vecsets = derive2 { name="vecsets"; version="1.4"; sha256="0v6l8kmshb6ipcvjx9i26mwrc810z7lv4ys8qqyzzpz0wwnlii7m"; depends=[pracma]; }; vectorbitops = derive2 { name="vectorbitops"; version="1.1.2"; sha256="1hgygcmyfaib72j9ck88312f4nqk0s5m01jqyizsy1j3ss8jaqi6"; depends=[]; }; + vectorsurvR = derive2 { name="vectorsurvR"; version="0.1.0"; sha256="00j2blaf5l8ancn4yjfywmw4l1kysxqkqfd5pg4klcr0h4idcnqd"; depends=[dplyr DT ggplot2 httr jsonlite kableExtra knitr lubridate magrittr plotly rstudioapi stringr tidyr]; }; vectorwavelet = derive2 { name="vectorwavelet"; version="0.1.0"; sha256="1z0gl28hgrqgx0ynv248a80fh190pm15c9cg1l1665acrw62kqs7"; depends=[biwavelet fields foreach iterators maps Rcpp spam]; }; vegalite = derive2 { name="vegalite"; version="0.6.1"; sha256="0dlzhvrg3nj6knyycdgg3d1vzq3dn9vxb34fjin9hzilszqmarbk"; depends=[base64 clipr digest htmltools htmlwidgets jsonlite magrittr webshot]; }; - vegan = derive2 { name="vegan"; version="2.6-4"; sha256="01hxlb5sy0d28ajq993fqs4z0qjcyl610d0ahjyjpbkrpszd92jx"; depends=[cluster lattice MASS mgcv permute]; }; + vegan = derive2 { name="vegan"; version="2.6-6.1"; sha256="0q0bp7xxmab1gcqk8wwm81sdvhccdvz5vqyn0grbwfb619q5wakx"; depends=[cluster lattice MASS mgcv permute]; }; vegan3d = derive2 { name="vegan3d"; version="1.3-0"; sha256="0y8x11551gaal2v4nyd97pwxaw5bqazfqywwrdj4wkp0gidn3hhh"; depends=[cluster rgl scatterplot3d vegan]; }; vegawidget = derive2 { name="vegawidget"; version="0.5.0"; sha256="1rar2a4rwzw3qvcazjvxqa0bmcrssqkxyqymdsyghl6kds8kx604"; depends=[assertthat digest glue htmltools htmlwidgets jsonlite magrittr rlang]; }; vegclust = derive2 { name="vegclust"; version="2.0.2"; sha256="18v1iqgabhsdxi76kvy9wgp9h2i17aw4c43kcki7lzyqiyyql0nx"; depends=[vegan]; }; vegdata = derive2 { name="vegdata"; version="0.9.12"; sha256="1fgha0sxgymiqnr6gwa3pjmbvb76iwxnpxs666zifscch4fz3z99"; depends=[curl DBI dbplyr dplyr foreign hoardr httr indicspecies magrittr plyr RSQLite stringr xml2]; }; vegperiod = derive2 { name="vegperiod"; version="0.4.0"; sha256="0m10m85cf0qk2q2ln1qziqicv79rbjqqi9py18r412j7m43pn013"; depends=[]; }; vegtable = derive2 { name="vegtable"; version="0.1.8"; sha256="0q854isd0bm53xxj45h64cxnvkck0hm43vrxizyxxgqwqf0syg3z"; depends=[foreign qdapRegex sp stringi taxlist vegdata]; }; - vein = derive2 { name="vein"; version="1.0.2"; sha256="0g0j9whhli4hhv4minciyj0dpnms85lzy6parlppjb2wfsxyp2aa"; depends=[cptcity data_table dotCall64 sf units]; }; + vein = derive2 { name="vein"; version="1.1.3"; sha256="018nnldvawijw9qnh6d4l9gy0x5chb2nx0fga7bpb91p20vd7lfd"; depends=[cptcity data_table dotCall64 sf units]; }; + vek = derive2 { name="vek"; version="1.0.0"; sha256="0ph67wfbs9r0fam79lmikbf0j0zbk0qqip7maxrxiy2zdbbf6xg2"; depends=[]; }; velociraptr = derive2 { name="velociraptr"; version="1.1.0"; sha256="0a67vmv05cxc9f27aqzr6nkgy2mj3fhykwj5nb23qwfqa669a5hi"; depends=[sf]; }; vembedr = derive2 { name="vembedr"; version="0.1.5"; sha256="1hmwgrp9vj7qwmsvnvgry8h707kj53wp5chpxqsbgxi9jryabpc0"; depends=[assertthat glue htmltools httr lifecycle magrittr stringr]; }; venn = derive2 { name="venn"; version="1.12"; sha256="07bjv0m21gljdr3sj1z9rp6xhgxspah9j1m3a8rskvlwv6dvd1pd"; depends=[admisc]; }; @@ -20090,7 +20404,7 @@ in with self; { verbalisr = derive2 { name="verbalisr"; version="0.5.2"; sha256="1h00dwfsw2k5x2m0mpwh2ni8wsvixv7i4ps4vl4pmhq73xxx3f9a"; depends=[pedtools ribd]; }; verhoeff = derive2 { name="verhoeff"; version="0.4.0"; sha256="0kpxpl5s5342ajg22cwb7y9ks240drp37q1g67n19krdy6ih14kz"; depends=[]; }; verification = derive2 { name="verification"; version="1.42"; sha256="0pdqvg7cm9gam49lhc2xy42w788hh2zd06apydc95q2gj95xnaiw"; depends=[boot CircStats dtw fields MASS]; }; - vermeulen = derive2 { name="vermeulen"; version="0.1.1"; sha256="10jlgrwpgkfiwlyli6mpd0wavi71h39sj6mklnvfskhnblvqdrz8"; depends=[memoise]; }; + vermeulen = derive2 { name="vermeulen"; version="0.1.2"; sha256="0wy7ml7z09n3hr4xma8nblv83bqpnsd6hmh9cqhqbndcrm3nbfby"; depends=[memoise]; }; versioning = derive2 { name="versioning"; version="0.1.0"; sha256="0r4ffd1s9warfan7ldcd6sn98qimsllf77dhxfygblr8spxcl7h5"; depends=[assertthat data_table foreign glue haven R6 sf terra yaml]; }; versions = derive2 { name="versions"; version="0.3"; sha256="0zm49j785dgv7fyr1yl9q5f0dsk8hhpim5q5bpkgrkzv7pwjribd"; depends=[]; }; versionsort = derive2 { name="versionsort"; version="1.1.0"; sha256="00r0h2iqlfq0nidqbhx4fv29rlppfx43jv2n2zp38lpx5vbqjhnj"; depends=[]; }; @@ -20110,10 +20424,10 @@ in with self; { video = derive2 { name="video"; version="0.1.1"; sha256="0h500mpbjiwggx1m8zfydhr9n4v27is9s46ay9856d2lgv2srlfg"; depends=[htmlwidgets jsonlite shiny]; }; vietnamcode = derive2 { name="vietnamcode"; version="0.1.1"; sha256="0vc0c1fg30afar2dkch5h27b8jbglcd9ja6d5hcypnibqz4c68vz"; depends=[]; }; vietnameseConverter = derive2 { name="vietnameseConverter"; version="0.4.0"; sha256="1bnscv1yz4hr6cvpavdj2gjn6dqy96rbagxl9280a2xxav09mps3"; depends=[gsubfn sf utf8]; }; - viewpoly = derive2 { name="viewpoly"; version="0.3.2"; sha256="1say30d46vj67ng5mprhwl02jf9d0kv573j80r05z08szmcm4sxb"; depends=[abind config curl dplyr DT ggplot2 ggpubr golem JBrowseR markdown plotly reshape2 shiny shinydashboard shinyjs shinythemes shinyWidgets tidyr vroom]; }; + viewpoly = derive2 { name="viewpoly"; version="0.4.1"; sha256="1c97khxsfnml21wh8np4qp7w2w31zxw72dl5vy25jjpx06dbp814"; depends=[abind config dplyr DT ggplot2 ggpubr golem hidecan JBrowseR markdown plotly purrr reshape2 shiny shinydashboard shinyjs shinythemes shinyWidgets tidyr vroom]; }; viewscape = derive2 { name="viewscape"; version="1.0.0"; sha256="1hjr6r6p5n4knmbdd38dpdlwdpycq8k5im0i0rfk28xnix7769mv"; depends=[dplyr ForestTools pbmcapply Rcpp rlang sf sp terra]; }; viking = derive2 { name="viking"; version="1.0.2"; sha256="145xrfifdqnzclzx2c7aj89yw5sd8f34jijpia595dy30lssywwi"; depends=[]; }; - villager = derive2 { name="villager"; version="1.1.1"; sha256="0g72zpsqi39ax44n3s3x66b1fbgyx6w2wraf531jsy7vj95ivr2p"; depends=[R6 readr uuid]; }; + villager = derive2 { name="villager"; version="2.0.0"; sha256="1jcgjz6sn5izn3bqi6g45f40nw921vvqj74apb2i44h6a3qnxqjg"; depends=[R6 readr uuid]; }; vimp = derive2 { name="vimp"; version="2.3.3"; sha256="069pcxzavi213idpslnc1skylsb1wn6xldajnn54prlwq9hkfb19"; depends=[boot data_table dplyr magrittr MASS rlang ROCR SuperLearner tibble]; }; vimpclust = derive2 { name="vimpclust"; version="0.1.0"; sha256="0ly7piz7q88sh2g7zq5b2pqph9467b4fclgq9amm0m7xc8vrv4f9"; depends=[ggplot2 mclust PCAmixdata Polychrome rlang]; }; vindecodr = derive2 { name="vindecodr"; version="0.1.1"; sha256="0yvchdf90l8lkzyba5wrpma6vjcgf19li159s8s79y8sgp5pyx7p"; depends=[httr]; }; @@ -20125,16 +20439,15 @@ in with self; { vipor = derive2 { name="vipor"; version="0.4.7"; sha256="17hb6y1i9bva0fr4k9m6wncmnzdjad1b7fhsvfhva4xavpll3bds"; depends=[]; }; viraldomain = derive2 { name="viraldomain"; version="0.0.3"; sha256="10lk3rjfr2faj8wdxd0v1c0xk22bzsrl1arz6ab5xxsd0zzc9kxh"; depends=[applicable dplyr earth ggplot2 kknn nnet parsnip recipes vdiffr workflows]; }; viralmodels = derive2 { name="viralmodels"; version="1.2.0"; sha256="0azpydlvbkbsaj7zcvl95s5y8d8pj72rkv4zna2851046yz170jl"; depends=[dplyr earth kknn nnet parsnip recipes rsample tidyselect tune vdiffr workflows workflowsets]; }; - viralx = derive2 { name="viralx"; version="1.2.0"; sha256="03zjyajr790cpv92rfdjn6llc80hf03zqyycqxd8649p15przc6v"; depends=[DALEX DALEXtra dplyr earth Formula kknn parsnip plotmo plotrix recipes rsample TeachingDemos vdiffr workflows]; }; + viralx = derive2 { name="viralx"; version="1.3.0"; sha256="1449r74g4q7qigyqb21sasdyr80542b4lfavjszh2s5bd8pkc8di"; depends=[DALEX DALEXtra dplyr earth Formula kknn parsnip plotmo plotrix recipes rsample TeachingDemos vdiffr workflows]; }; viridis = derive2 { name="viridis"; version="0.6.5"; sha256="0p00s24d8bsifw3r0afwrx98bqixnf5krpbw42hfwp8ipsv5qaw6"; depends=[ggplot2 gridExtra viridisLite]; }; viridisLite = derive2 { name="viridisLite"; version="0.4.2"; sha256="18g1rk24kr47jl01r70vvni2146fl9xxpjcvjp6d5k6y64fi2gw9"; depends=[]; }; virtualPollen = derive2 { name="virtualPollen"; version="1.0.1"; sha256="0caiyl7h9qn3nv34dafv5rs4v7n4avyjpng0rkz6aw3ri1zn8sa0"; depends=[cowplot ggplot2 mgcv plyr tidyr viridis]; }; virtualspecies = derive2 { name="virtualspecies"; version="1.6"; sha256="1bqrh17fcskklsdkwkg9lvlki67jigr0c32mq4bfl16iisrc1342"; depends=[ade4 raster rnaturalearth terra viridis]; }; virtuoso = derive2 { name="virtuoso"; version="0.1.8"; sha256="1smb8sjfqcp3jflplgf92swasxzrp72fnnqwyisf87pjknm91qsc"; depends=[curl DBI digest fs ini odbc processx ps rappdirs]; }; - viruslearner = derive2 { name="viruslearner"; version="0.0.1"; sha256="1x8d3zs6dzl34y7lamkxsn7f9pxy5034yn2q79g3fwzmvvrnniy5"; depends=[dials dplyr hardhat parsnip recipes rsample stacks tidyselect tune workflows workflowsets yardstick]; }; virustotal = derive2 { name="virustotal"; version="0.2.2"; sha256="020kwhki5740857zd24xm18dg3whzhf527qhmfx1cxyqyld404wy"; depends=[httr plyr]; }; visNetwork = derive2 { name="visNetwork"; version="2.1.2"; sha256="116w3l65lgv18xzav5zz1pbgwpwck66n9cjpja9axrl9zi19vja7"; depends=[htmltools htmlwidgets jsonlite magrittr]; }; - visOmopResults = derive2 { name="visOmopResults"; version="0.2.0"; sha256="1g0vf28r1lbmisczdpbffgaxr40ac173arha2f6hcw5083s54plj"; depends=[cli dplyr generics glue lifecycle omopgenerics rlang stringr tidyr]; }; + visOmopResults = derive2 { name="visOmopResults"; version="0.3.0"; sha256="1lfvihny8r8x0qhzlqhq3wysijypkqz3mgd70j9cy71m5hhypx6z"; depends=[cli dplyr generics glue lifecycle omopgenerics rlang stringr tidyr]; }; visR = derive2 { name="visR"; version="0.4.1"; sha256="1ra2fky23fv3rc9gj4zg64s2c2xcc52whf24wp2nfmg1f0nr278g"; depends=[broom cowplot dplyr DT forcats ggplot2 gridExtra gt gtable kableExtra knitr lifecycle rlang survival tibble tidycmprsk tidyr]; }; visStatistics = derive2 { name="visStatistics"; version="0.1.1"; sha256="0lp6sf2wrjjp1zh77yhlgr9sfpls54z0bny0l36v98ik4qykky0f"; depends=[Cairo multcompView nortest vcd]; }; visTree = derive2 { name="visTree"; version="0.8.1"; sha256="1l07zfr2hagjpdxfw5290wa3ki4bl7iqxrrhda0d1bp3wmwfz0ai"; depends=[colorspace partykit rpart]; }; @@ -20149,7 +20462,7 @@ in with self; { vismeteor = derive2 { name="vismeteor"; version="1.8.5"; sha256="059v7qxpkhir066rrw9kxnb8wnyjgwi2fj9mkb7wl0zrqbknhglb"; depends=[DBI]; }; visreg = derive2 { name="visreg"; version="2.7.0"; sha256="070yhyxxh3w16i54k790n47bgcjn4b10b6g1z553x6afjc3l3a6d"; depends=[lattice]; }; vistime = derive2 { name="vistime"; version="1.2.4"; sha256="14nm2p8yyl0zcf4al31cvnji4a9fi6zs1hvcjpa7dcyjdxd6yfyi"; depends=[assertthat ggplot2 ggrepel plotly RColorBrewer rlang]; }; - vistla = derive2 { name="vistla"; version="2.0.1"; sha256="0chlmlq6ydkb36dmfx5j4syhm9s3sqhhr20fxyp3jhbhv19c83bj"; depends=[]; }; + vistla = derive2 { name="vistla"; version="2.0.2"; sha256="06mjzm00q3zfw3a7a7pivdnn47zxi0qrqlv47izhy6baqlrxp3mr"; depends=[]; }; vistributions = derive2 { name="vistributions"; version="0.1.2"; sha256="1nzkbyqks38n7gp55iqhrlxqyfwxk4fvqzi9vsb45h0m0hlmwhxr"; depends=[ggplot2 magrittr]; }; visualFields = derive2 { name="visualFields"; version="1.0.1"; sha256="1z62xappwjdv9f7ql5spydkb626rdj3hvpvzy3d71fwm0y3qwki3"; depends=[boot combinat deldir dplyr DT gtools Hmisc htmlTable oro_dicom plotrix polyclip pracma rlang shiny shinyjs XML]; }; visualize = derive2 { name="visualize"; version="4.5.0"; sha256="0bsdyqakidgdgxhzyl6w0pg3mnkj84550c4s7dwcwjjqqjsr9bj1"; depends=[]; }; @@ -20157,15 +20470,15 @@ in with self; { visvow = derive2 { name="visvow"; version="1.3.11"; sha256="1my0gvp63lri56hkqrs7xsr5i6ji9w17xm94mrrc9lgwy5sj3vf0"; depends=[Cairo dplyr DT effectsize formattable ggdendro ggplot2 ggrepel MASS PBSmapping plot3D plyr pracma psych Rdpack readxl Rtsne shiny shinyBS shinybusy splitstackshape svglite tidyr tikzDevice vegan WriteXLS]; }; visxhclust = derive2 { name="visxhclust"; version="1.1.0"; sha256="1wx16mg5g58p4mgf5y776i5ahgpqqjy4wbfqhfjph36mrhs6qr22"; depends=[bsplus circlize cluster clValid ComplexHeatmap dendextend dplyr DT dunn_test fastcluster ggplot2 kableExtra knitr patchwork RColorBrewer readr shiny shinycssloaders shinyhelper tidyr]; }; vita = derive2 { name="vita"; version="1.0.0"; sha256="114p2lzcr8rn68f0z4kmjdnragqlmi18axda9ma4sbqh8mrmjs9v"; depends=[randomForest Rcpp]; }; - vitae = derive2 { name="vitae"; version="0.5.4"; sha256="11vp146fqxcq10kpsyrxmyc3i2kcwx15swgill61zs6g9l54asky"; depends=[dplyr glue jsonlite knitr pillar rlang rmarkdown tibble vctrs xfun yaml]; }; + vitae = derive2 { name="vitae"; version="0.6.0"; sha256="0mb6kps08za2sma2d5xw441kpri425arlbwznygifd7g3c5zyvhv"; depends=[dplyr glue jsonlite knitr pillar rlang rmarkdown tibble vctrs xfun yaml]; }; + vital = derive2 { name="vital"; version="1.0.0"; sha256="0rq7abqpqj5l5vvawj8x0p4bhvs0pcd883xiqbjzc65girn9ffar"; depends=[cobs distributional dplyr fable fabletools future_apply generics ggplot2 HMDHFDplus mgcv patchwork progressr purrr rlang tibble tidyr tidyselect tsibble vctrs]; }; vitality = derive2 { name="vitality"; version="1.3"; sha256="17micfmlksnw167vavvhlk431fm20k74y5ggs47pgz5fwpm854zp"; depends=[]; }; - vivainsights = derive2 { name="vivainsights"; version="0.5.2"; sha256="14ca964i5akcjrgqrazizhdaz291p15vj75awqxd5y32412hykjq"; depends=[data_table dplyr ggplot2 ggraph ggrepel ggwordcloud htmltools igraph lifecycle magrittr markdown networkD3 purrr reshape2 rmarkdown scales tidyr tidyselect tidytext wpa]; }; + vivainsights = derive2 { name="vivainsights"; version="0.5.3"; sha256="0gdhq8qdzzzvv2l5cr57wp6lnn082hcs7svbdjaphzx6ryw1bqna"; depends=[data_table dplyr ggplot2 ggraph ggrepel ggwordcloud htmltools igraph lifecycle magrittr markdown networkD3 purrr reshape2 rmarkdown scales tidyr tidyselect tidytext wpa]; }; vivaldi = derive2 { name="vivaldi"; version="1.0.1"; sha256="1dvihjc6vjzg2w1j0q6vjhlhpwkknwsd97lpbqbfpacpp337mvx8"; depends=[dplyr ggplot2 glue magrittr plotly seqinr tidyr tidyselect vcfR]; }; vivid = derive2 { name="vivid"; version="0.2.8"; sha256="0zl9p8dsrz9lmylnfxj4b50g1lvk7563ss0w3k1pidkwrs4kazin"; depends=[colorspace condvis2 DendSer dplyr flashlight GGally ggalt ggnewscale ggplot2 igraph RColorBrewer sp]; }; vivo = derive2 { name="vivo"; version="0.2.1"; sha256="1cfval06byviw7himr5nql34h4jaway9gb6dzya3v994p7v851cg"; depends=[DALEX ggplot2]; }; vizdraws = derive2 { name="vizdraws"; version="2.0.0"; sha256="1swf1xk6l086my4gknb9q4gyc3a37vs9z2p2484zf5ba9inzwix1"; depends=[dplyr htmlwidgets magrittr stringr]; }; vkR = derive2 { name="vkR"; version="0.2"; sha256="1pk444fcw4yyv2dnfrw9vynbpc4gwr5yv9jd41djp9yipdf6d53l"; depends=[httr jsonlite purrr XML]; }; - vlda = derive2 { name="vlda"; version="1.1.5"; sha256="17xn8qqh043dm05ib3h4l1qx07wxncf5d06x9l1wl6jbkvnsm2nq"; depends=[dplyr ggiraph ggplot2 ggrepel ggsci]; }; vmdTDNN = derive2 { name="vmdTDNN"; version="0.1.1"; sha256="08bdihlf2lj1wfxilshxww3sav7c35qiqzs468mdahbn4vnzbngr"; depends=[forecast nnfor VMDecomp]; }; vmeasur = derive2 { name="vmeasur"; version="0.1.4"; sha256="17rqr8zpfnq3f0d3yi9w09wvrbq79g4w7rkqf4l2wyd8ic5npwb0"; depends=[av crayon doFuture dplyr foreach future ggplot2 ggpubr imager magrittr pdftools pracma progressr purrr readr rlang scales stringr svDialogs tidyr]; }; vmr = derive2 { name="vmr"; version="0.0.6"; sha256="0vm4wxf9zb2xgjd9xam3gy6mqr621x922ldshrxs4cibaag3lq5x"; depends=[curl jsonlite]; }; @@ -20179,7 +20492,7 @@ in with self; { volcano3D = derive2 { name="volcano3D"; version="2.0.9"; sha256="1k1n49pzsdkwia09mf9ra75cbnx49q99ygn5c92kyq8kqv83d1w8"; depends=[ggplot2 ggpubr htmlwidgets magrittr matrixTests plotly Rfast rlang]; }; volcanoPlot = derive2 { name="volcanoPlot"; version="1.0.0"; sha256="06nkv56c36wgnb7s6gkpp14syzhm5zm2wdfjx9wamxp5cf0wk3mk"; depends=[dplyr DT fmsb ggplot2 purrr shiny tidyr]; }; volesti = derive2 { name="volesti"; version="1.1.2-7"; sha256="1x730da30y763j6dcdahspbpf81zqaazqzfvfznsi0kq05856z2n"; depends=[BH Rcpp RcppEigen]; }; - volker = derive2 { name="volker"; version="1.0.2"; sha256="00f4qzi8r9nm3b05lw4sbrajw9srnz7gqfzi8pvixvbi8ks91wpg"; depends=[base64enc dplyr forcats ggplot2 glue janitor kableExtra knitr lifecycle magrittr psych purrr rlang rmarkdown scales skimr stringr tibble tidyr tidyselect]; }; + volker = derive2 { name="volker"; version="2.0.1"; sha256="18dmzr6ginlqdmkqbdzsqfwndgkgx7fydkq32d6plinb2fsaccd7"; depends=[base64enc broom car dplyr effectsize ggplot2 kableExtra knitr lifecycle magrittr psych purrr rlang rmarkdown scales skimr tibble tidyr tidyselect]; }; volleystat = derive2 { name="volleystat"; version="0.2.0"; sha256="0n1r0bvvmba21cs3qgpnw9jxpgl2n82fhxa40sa1w2gav5rch5i6"; depends=[]; }; voluModel = derive2 { name="voluModel"; version="0.2.1"; sha256="1kkqgbsjsgwia03v7mfbn2zc830hfsayx4q6f4qmrv6ql6x5imcg"; depends=[dplyr fields ggplot2 ggtext modEvA rangeBuilder sf terra viridisLite]; }; voronoiTreemap = derive2 { name="voronoiTreemap"; version="0.2.0"; sha256="1wvnqdrvba4ss4f3k8gzb720irdq2brv2aaq16ywifv8fnjf02r3"; depends=[data_tree DT htmlwidgets rlang shiny shinyjs]; }; @@ -20203,18 +20516,20 @@ in with self; { vscc = derive2 { name="vscc"; version="0.7"; sha256="082jxk8fw4rplal9672bi6rr1jwpb5h6clrdlv9jj4ffvlbg6vaz"; depends=[ManlyMix mclust MixGHD teigen]; }; vsd = derive2 { name="vsd"; version="0.1.0"; sha256="18whnvary4glblzx1vxf3yzsllnnnbnyijwhbw7bi3agppnwrf22"; depends=[dplyr flexsurv ggplot2 ggpubr magrittr muhaz survival survminer]; }; vsgoftest = derive2 { name="vsgoftest"; version="1.0-1"; sha256="0vypi4cf04bljmx3jwq3ixs86ivd6p7a825ik189y71fyqg9g70v"; depends=[fitdistrplus Rcpp]; }; + vsmi = derive2 { name="vsmi"; version="0.1.0"; sha256="1slyz8ldd3vqqqcpjccr0qsfy664m4zjczgr5qh0d4pcy0yg5f4x"; depends=[MASS Matrix mice qif]; }; vsp = derive2 { name="vsp"; version="0.1.1"; sha256="0aa3vqzazh0x5irbmqh9ac1xiprwnbgbrjl9bybxzynl91hwg9yw"; depends=[ggplot2 glue invertiforms LRMF3 magrittr Matrix rlang RSpectra tibble withr]; }; vstdct = derive2 { name="vstdct"; version="0.2"; sha256="0g26cplp5vjppyw8w37vdy3wah3i9wi14j64vl7i8d2fjbhqhqxp"; depends=[dtt MASS nlme]; }; vstsr = derive2 { name="vstsr"; version="1.1.0"; sha256="071nfxkwwpbp2d8khxq7d1pp268pa1fcfj619bs6xwg4wk9srr3k"; depends=[httr jsonlite R6 RCurl]; }; vtable = derive2 { name="vtable"; version="1.4.6"; sha256="1via6iz6ykw02wh5aagr9vqbzlqjvc5iyzfjr13yzyxarpi8zpdr"; depends=[haven kableExtra knitr rstudioapi sjlabelled]; }; - vtreat = derive2 { name="vtreat"; version="1.6.4"; sha256="1b32rrmnkpm53vgdg479q4wwzlgcisbz9x24rvcn42pjm9r8wwf8"; depends=[digest wrapr]; }; + vtreat = derive2 { name="vtreat"; version="1.6.5"; sha256="04ymyv7ybahs4k6yc2dbmhhnxnjsa09h8cbfayslr655rzlgyqx5"; depends=[digest wrapr]; }; vtree = derive2 { name="vtree"; version="5.6.5"; sha256="0qszya11qh2xzq1blbrcli3l8hhf0dannhh2hn3gi59c9dn3jr16"; depends=[DiagrammeR DiagrammeRsvg htmlwidgets rsvg shiny utf8]; }; vtype = derive2 { name="vtype"; version="0.8"; sha256="0j070bn86a6hlg99h2qaf0dlbnjjsmx1zdcmvl3acymr31bqyvrj"; depends=[randomForest]; }; vudc = derive2 { name="vudc"; version="1.1"; sha256="0zxz6n3ixa3xjzcinky8ymqjx9w8y8z65mz8d84dl00mxzkmkz4h"; depends=[]; }; vueR = derive2 { name="vueR"; version="0.6.0"; sha256="07l1q5dgwplcfcp1ipbcx2i4d54f7fn4rclb71yb7ms2g98lq1gw"; depends=[htmltools htmlwidgets]; }; vvauditor = derive2 { name="vvauditor"; version="0.6.0"; sha256="10f9ylb7kpm28smw8nsnlmiqk8pp9zdfvkrk4qxk6pfyriv341jb"; depends=[checkmate cli dplyr findR janitor kit lubridate magrittr purrr stringr tibble]; }; - vvcanvas = derive2 { name="vvcanvas"; version="0.0.3"; sha256="1dm8d9zammsgl7rq07m0a2brrb2vxinyqpwcmvlpls2aphgsg077"; depends=[dplyr htm2txt httr jsonlite magrittr purrr rlang stringr tidyr]; }; - vvconverter = derive2 { name="vvconverter"; version="0.5.9"; sha256="1hrdqlnlafdkrggzqfj7zinsz0w47ikzf098fbjcssgchfp91g8m"; depends=[checkmate dplyr lubridate magrittr polyglotr stringr]; }; + vvcanvas = derive2 { name="vvcanvas"; version="0.0.4"; sha256="1var5p4znz8xgbvhpcz2m4z9c129nxb4yqhwjmj8sf8y6m2dsbrw"; depends=[dplyr htm2txt httr jsonlite magrittr purrr rlang stringr tidyr]; }; + vvconverter = derive2 { name="vvconverter"; version="0.5.10"; sha256="1dl0vvglj2p1i1c1a9vxgr6cr5f7bxqqnv7w1ds0gzgwv5zyhz1c"; depends=[checkmate dplyr lubridate magrittr polyglotr stringr]; }; + vvdoctor = derive2 { name="vvdoctor"; version="0.0.1"; sha256="1sxj7a6pg1kynwsb1fc28l3ipj3jf5azn4cyck0489hsxqnyjn5p"; depends=[datamods DescTools DT exact2x2 irr magrittr rintrojs rstatix shiny shinyjs shinyWidgets]; }; vvfiller = derive2 { name="vvfiller"; version="0.6.7"; sha256="0kknnnkfdw9h4wxs215pgmg1j0mbl5lqfw4xl0il8rw6n0yy7vsn"; depends=[dplyr purrr rlang]; }; vvmover = derive2 { name="vvmover"; version="1.6.0"; sha256="0bg7mc8wz3d9ibp2kbc8lc0zdbbf8i2rj3hxsrnk0yrzxbb6czdg"; depends=[dplyr magrittr readr readxl]; }; vvsculptor = derive2 { name="vvsculptor"; version="0.4.10"; sha256="076fdzhr5b39k1vavj3jf7897vpdjgfbf8fxxqi6y4cy0pz4iisi"; depends=[dplyr]; }; @@ -20222,13 +20537,11 @@ in with self; { vvtableau = derive2 { name="vvtableau"; version="0.6.0"; sha256="0l5ma8004zw69w55qvdmrl1jzg25bp69szyhqddn2h5qcnbg9r1j"; depends=[data_table dplyr httr jsonlite magrittr purrr stringr tidyr XML xml2]; }; vvtermtime = derive2 { name="vvtermtime"; version="0.0.1"; sha256="0c7cry87wgk86wydrw0l8icc25lx5fcxzm1wyfs2ls8ppmpkz3l7"; depends=[httr jsonlite magrittr]; }; vwline = derive2 { name="vwline"; version="0.2-2"; sha256="1hilr996xn5wh8kfyab55w2i1c02a8x909h4ahag5q6s7603qng5"; depends=[gridBezier polyclip]; }; - vyos = derive2 { name="vyos"; version="1.0.2"; sha256="0mqhxib04frcwqxq8qchmxm4d4kr4q2pjf3ki99q5dillihhk2fs"; depends=[crayon digest dplyr glue httr httr2 jsonlite lubridate magrittr purrr Rcpp rlang rlist stringr tibble]; }; wCorr = derive2 { name="wCorr"; version="1.9.8"; sha256="0ja51w17q80r7xpwqhzn416b48ji9178026wf5ibm4s0hsfz7vb2"; depends=[minqa mnormt Rcpp RcppArmadillo]; }; wINEQ = derive2 { name="wINEQ"; version="1.2.0"; sha256="1b47dxa9q34xylp2bvzl0c9bbsd2l4fw8avq50575sc3w3v0bs62"; depends=[dplyr sampling]; }; wISAM = derive2 { name="wISAM"; version="0.2.8"; sha256="0c5ic98ihpzkycsj9wg0127civm4w1rmkkw6zsjp8sfn20cl8a8z"; depends=[MASS]; }; wNNSel = derive2 { name="wNNSel"; version="0.1"; sha256="19j2yz6lvkxpmjr0vv6pjc7j1c02y0hb3gay5sy1y0xk706aggb5"; depends=[]; }; wPerm = derive2 { name="wPerm"; version="1.0.1"; sha256="0f3v0kba87wkwyii0pzvs6a8ja897aifpvwkvryl2hzxxxaml7z4"; depends=[]; }; - wTO = derive2 { name="wTO"; version="2.0.2"; sha256="0c5cr48h2zvp629iyg1n05fgh1v2wvc5bmzc75c1flrj2rrfs83v"; depends=[data_table HiClimR igraph magrittr plyr reshape2 Rfast som visNetwork]; }; wacolors = derive2 { name="wacolors"; version="0.3.1"; sha256="0c5ja70vgb2f1l2k5j7amxhkydbj44nc290ccr816xglj31nvsiy"; depends=[ggplot2 scales]; }; wactor = derive2 { name="wactor"; version="0.0.1"; sha256="0dc7413jb3yz0nns2lc93w32wv6m4sg17j2ip63gc12vis0nf855"; depends=[ggplot2 Matrix R6 text2vec tibble tokenizers xgboost]; }; waffle = derive2 { name="waffle"; version="1.0.2"; sha256="17z05mlnp2k9dywr0bbqz633sq1xs8q9879bl2na1in39qxq0l76"; depends=[curl DT extrafont ggplot2 gridExtra gtable htmlwidgets plyr RColorBrewer rlang stringr]; }; @@ -20249,7 +20562,7 @@ in with self; { warbleR = derive2 { name="warbleR"; version="1.1.30"; sha256="1fdlivdqawk4g9xb1zc4hdbdd0v44kpdzfb8z75i09zg2nqhgpw1"; depends=[bioacoustics cli dtw fftw knitr monitoR NatureSounds pbapply Rcpp RCurl rjson seewave testthat tuneR]; }; warp = derive2 { name="warp"; version="0.2.1"; sha256="1gj65kgs7x63f6y2vnv13k293b52k4afbmdlcam635h9vs8da2h2"; depends=[]; }; warpMix = derive2 { name="warpMix"; version="0.1.0"; sha256="13zbl4aifhg7j5b3vpwgzgs09hr7yblz0rckmj5qh40s78j8cpfn"; depends=[fda fields lme4 MASS nlme reshape2]; }; - washdata = derive2 { name="washdata"; version="0.1.3"; sha256="0m7rwwi189sbsv3144x14jqmfax30f6ri1pisy47yggmmjpdplps"; depends=[]; }; + washdata = derive2 { name="washdata"; version="0.1.4"; sha256="17hmhcnh53fivxaywa0hvjl9y527ms2pqlapd1wvyx3gjqkggwyg"; depends=[]; }; washeR = derive2 { name="washeR"; version="0.1.3"; sha256="082myz7lw9dyk4ygyj0q39n4h1gghsd1q7667ngzxa20lm0658wd"; depends=[gplots]; }; washex = derive2 { name="washex"; version="1.2.0"; sha256="0g5cgs6y3l7ng4bcia1w3ysb8z7s3187ph5g052bssd3w01kim6g"; depends=[curl dplyr httr purrr rlang XML xml2]; }; washi = derive2 { name="washi"; version="0.2.0"; sha256="04cibvi0d9spx8h0r28m1sz5drrkiblzfp63v6csm2n4dv55x075"; depends=[cli flextable ggplot2 officer scales systemfonts]; }; @@ -20263,13 +20576,13 @@ in with self; { watson = derive2 { name="watson"; version="0.4"; sha256="02wf4nh8gqq0ks9mzv4w1ly194syiixrfr8b6c61m90qwswglx1l"; depends=[Rcpp RcppArmadillo Tinflex]; }; wav = derive2 { name="wav"; version="0.1.0"; sha256="1f5y53max7vliq4sq66hqjjns8s9lsx9pkdjk6rm929gk371x7by"; depends=[Rcpp]; }; wavScalogram = derive2 { name="wavScalogram"; version="1.1.3"; sha256="06a38hvggvx39h0m7g35r0d4v8gbi1a5m0x1kv9q88vngwm4mxkv"; depends=[abind fields]; }; - waveband = derive2 { name="waveband"; version="4.7.2"; sha256="1aa1rdwpfj3fx3xc7i9h0la268yv7hsm1fxndq3rk5slzy12zq8z"; depends=[wavethresh]; }; + waveband = derive2 { name="waveband"; version="4.7.3"; sha256="08pa6vasv5miyw492ybwlszhk12ws61qd7a1rwjm1xkl838ca7kp"; depends=[wavethresh]; }; waved = derive2 { name="waved"; version="1.3"; sha256="120dh64288daiq3k9ixcqxscy3brafwvv1964ndab1am0w466bqc"; depends=[]; }; wavelets = derive2 { name="wavelets"; version="0.3-0.2"; sha256="07706rsjdmzj46ib2kfm5lfk4bnm2wfw7rby0ixs6x0myyzxdl92"; depends=[]; }; wavemulcor = derive2 { name="wavemulcor"; version="3.1.2"; sha256="0a9qhcgf0l3zpwq8m476py94wb4rasy6a8xj302y6kwg3gvh1smm"; depends=[plot3D RColorBrewer waveslim]; }; waver = derive2 { name="waver"; version="0.3.0"; sha256="1yhbp1jimx33g4sjigr5vmqqrinz1mdfgvkaaj4y2gcx7sihiiwx"; depends=[geosphere sf]; }; waves = derive2 { name="waves"; version="0.2.5"; sha256="1ggpldwdgc97jp03n3z5s8hw3ib6q09yyinryz78xs798v9l4qdl"; depends=[caret dplyr ggplot2 lifecycle magrittr pls prospectr randomForest readr rlang scales spectacles stringr tibble tidyr tidyselect]; }; - waveslim = derive2 { name="waveslim"; version="1.8.4"; sha256="1510xpkgrhdw394m5anxccdczjikcxazyd09ix2z73i15akyx3j0"; depends=[]; }; + waveslim = derive2 { name="waveslim"; version="1.8.5"; sha256="0xd7006skrsvkwj4pkxqbfsbs58rfcpfcfk1lf0gsd2y0wisi60y"; depends=[multitaper]; }; wavethresh = derive2 { name="wavethresh"; version="4.7.2"; sha256="0mmn8f5x8iw8vn0zsskzs3g41bm28prvzy9bmbng8va94g5795ws"; depends=[MASS]; }; waydown = derive2 { name="waydown"; version="1.1.0"; sha256="1yjx9cd8h8rsi44s7dcqrvfmsbjhw7vkg2z7bl4knsgbki0c978g"; depends=[Matrix numDeriv]; }; waywiser = derive2 { name="waywiser"; version="0.5.1"; sha256="1ffi4422dph90lwdc72za0sj224mwwddr66awf9yicszj42a6q81"; depends=[dplyr fields FNN glue hardhat Matrix purrr rlang sf spdep tibble tidyselect vctrs yardstick]; }; @@ -20280,7 +20593,7 @@ in with self; { wbsts = derive2 { name="wbsts"; version="2.1"; sha256="07h3wqmb9ya878fwdj49r0npks0pnd3jlnzri1cmf27c691hwka4"; depends=[mvtnorm Rcpp wavelets]; }; wcde = derive2 { name="wcde"; version="0.0.7"; sha256="1wyq4m6ziv4b8zkzg3gjjnyhj2bg18ikfxz98q9c2nxqdiq4kbir"; depends=[countrycode dplyr forcats magrittr progress purrr RCurl stringr tibble tidyr]; }; wcep = derive2 { name="wcep"; version="1.0.2"; sha256="0ydlfd6ngmrccaf9zybyzp11x98kih40kj3i2dq81ixxsgk2pjnq"; depends=[coin dplyr progress tidyr]; }; - wconf = derive2 { name="wconf"; version="1.0.0"; sha256="1a2h8zzkb1lmk29f0i724df6rr4x9azn5bbkg23i8j7qy23vdsmv"; depends=[]; }; + wconf = derive2 { name="wconf"; version="1.1.0"; sha256="0860shxvyzgvbnfr0xrpi5cx0r5n6bcrk6ivhgryn48r0k3yrlp4"; depends=[]; }; wcox = derive2 { name="wcox"; version="1.0"; sha256="13shz5iz2ab9yqp24m6z7ciw70sdg2jdyqifmshq4flp4a737fr7"; depends=[dplyr survival tidyr]; }; wdm = derive2 { name="wdm"; version="0.2.4"; sha256="1lrmscy29ir292vxrgr5b1nprbi1zp3rj65nq963kf9gx829rlg2"; depends=[Rcpp]; }; wdman = derive2 { name="wdman"; version="0.2.6"; sha256="0n0wwb9ip6qc8qzdxn4dsqfbc8b3f607n8l6jigryd7g83ibnbp6"; depends=[assertthat binman processx semver yaml]; }; @@ -20297,11 +20610,10 @@ in with self; { webdeveloper = derive2 { name="webdeveloper"; version="1.0.5"; sha256="1nw97df9q0dpzl82pdybw527hc407ch2xg8f0s2z4kf89yp6ckhg"; depends=[future html5 httpuv promises readr stringi]; }; webdriver = derive2 { name="webdriver"; version="1.0.6"; sha256="0k87any9rvv367p2zwy89r3rxszsq3w78pzdq36by4ijn659la2l"; depends=[base64enc callr curl debugme httr jsonlite R6 showimage withr]; }; webexercises = derive2 { name="webexercises"; version="1.1.0"; sha256="1r2wgg89a84q54mrwqv4wcsjvcndiwwjn6rk7qz37pfyciv68hzy"; depends=[jsonlite knitr rmarkdown rstudioapi yaml]; }; - webfakes = derive2 { name="webfakes"; version="1.3.0"; sha256="1w3ysb5m9pv74wdp75kaa6fzw44pdrij9wiq50mhivvbgh70xsi6"; depends=[]; }; + webfakes = derive2 { name="webfakes"; version="1.3.1"; sha256="0c4ja653fzamafkz7chfv16f1h7iibah683ma8sk2yaayywp7j47"; depends=[]; }; webglobe = derive2 { name="webglobe"; version="1.0.3"; sha256="0gbg4pai4cn7hdc1943aqpx4bn3vgc82zp93a1wl6bmmajv1da4b"; depends=[geojsonio httpuv jsonlite]; }; - webmap = derive2 { name="webmap"; version="1.0.7"; sha256="0md00ahy6v8rhr1ch6nikqgjs86arbal48d7k2hl3q75f15jx0v9"; depends=[checkmate htmltools htmlwidgets leaflet]; }; + webmap = derive2 { name="webmap"; version="1.1.0"; sha256="1j73d0hx9rrvc81id98lp2s2ya4whdkppw27cbz4rcwpa6lgzyg3"; depends=[checkmate htmltools htmlwidgets leaflet]; }; webmockr = derive2 { name="webmockr"; version="0.9.0"; sha256="1a590fyzmag1p6c9a82yp93wd1s4jdznk0416i0pv8r5jwarkdv7"; depends=[base64enc crul curl fauxpas jsonlite magrittr R6 urltools]; }; - webmorphR = derive2 { name="webmorphR"; version="0.1.1"; sha256="1f3sjzck4ys1knn2jmk472yww65wblrdwdlvn1gz2a00nc738rn4"; depends=[dplyr geomorph ggplot2 httr jsonlite magick progress rsvg]; }; webp = derive2 { name="webp"; version="1.2.0"; sha256="0srmqrjff3c15d2921rd3b203c6qq170gschbp92fi3d3qshv0fk"; depends=[]; }; webr = derive2 { name="webr"; version="0.1.5"; sha256="03yhlla74i71nphrfhr5sd57ykj7rjanh2a8nw3cq22rg9g668jk"; depends=[dplyr flextable ggforce ggplot2 magrittr moonBook psych purrr rlang rrtable scales shiny sjlabelled stringr tibble tidyr tidyselect vcd ztable]; }; webreadr = derive2 { name="webreadr"; version="0.4.0"; sha256="0l3l5g4zj5faxqi1kqwx9lq91gbj40z2q3csrsmpal08qnwkxs90"; depends=[Rcpp readr]; }; @@ -20309,7 +20621,7 @@ in with self; { webshot = derive2 { name="webshot"; version="0.5.5"; sha256="04xrrf72323sgzsdkbl05p2fdsi486i9avrrxvw0l3n8r8y92xfn"; depends=[callr jsonlite magrittr]; }; webshot2 = derive2 { name="webshot2"; version="0.1.1"; sha256="1i4432ifw6nxid9cjgly5qpirj245pvh1vfvhm695z3grkk5nvlv"; depends=[callr chromote later magrittr promises]; }; websocket = derive2 { name="websocket"; version="1.4.1"; sha256="1ks9cyj39jnb0rkx2ii3ckmpl373m5f8sz0i4q3gk7kkv3js07r8"; depends=[AsioHeaders cpp11 later R6]; }; - webtrackR = derive2 { name="webtrackR"; version="0.1.0"; sha256="0ksfrwmbcl6ss1pyj696k1swrdpn6hv6pq4844rrjq2p42cgybnw"; depends=[data_table httr igraph rvest tibble urltools]; }; + webtrackR = derive2 { name="webtrackR"; version="0.3.1"; sha256="18lch5l2i6pkwsba32mlnw13m2drqn1mqj9ivdihz8d1jmq4ikz0"; depends=[adaR data_table fastmatch httr]; }; webuse = derive2 { name="webuse"; version="0.1.3"; sha256="09xvw0v991cq1ck2kfxblp5cngfh9j6swvh5xv420mvky0kshv32"; depends=[haven]; }; webutils = derive2 { name="webutils"; version="1.2.0"; sha256="0g3zrbwiyq9z0chc66dr8gndqs0xdqkc49bpisbb7ns3g0fkl92i"; depends=[curl jsonlite]; }; wec = derive2 { name="wec"; version="0.4-1"; sha256="10lqh43536d44d6082rpp11q1323pmjbmgrgb8v9mrk9c1ysf50w"; depends=[dplyr]; }; @@ -20322,7 +20634,6 @@ in with self; { weightedGCM = derive2 { name="weightedGCM"; version="0.1.0"; sha256="04c24mxpvqdaprg6627w84ikmwxy96c1zcifn2y5n9ir7dlih5r3"; depends=[GeneralisedCovarianceMeasure mgcv xgboost]; }; weightedRank = derive2 { name="weightedRank"; version="0.2.5"; sha256="0sz2d482cjp0z2wxlqjq745xz3ap6h7v03l19q4y99p86909i0v4"; depends=[mvtnorm sensitivitymv]; }; weightedScores = derive2 { name="weightedScores"; version="0.9.5.3"; sha256="1wf01z94snwbqp22waz7qays3ymg5lsxpfpafdarad2b6mg5j2g8"; depends=[mvtnorm rootSolve]; }; - weightedZdiff = derive2 { name="weightedZdiff"; version="0.1.0"; sha256="1mrhjg0h7qiwya8jrmf5h4gc352ahc6fczlk5kfhqw5vkwr0b1k3"; depends=[]; }; weightr = derive2 { name="weightr"; version="2.0.2"; sha256="1qsyak91kdgv48wf6qhpfbiirlg4ba9w6rw8ynjcsnqqdvmly1lb"; depends=[ggplot2 scales]; }; weights = derive2 { name="weights"; version="1.0.4"; sha256="1fnchf7f0hyl514bk8sc3l884kg25kb5xm4mc2l28n6hm7l6bgpg"; depends=[gdata Hmisc lme4 mice]; }; weird = derive2 { name="weird"; version="1.0.2"; sha256="1xn1a7ssdwjvqynh5crr9dqf81smm1ldix1xlgfm42mpc478wplb"; depends=[aplpack broom cli crayon dbscan dplyr evd ggplot2 interpolation ks purrr rlang robustbase rstudioapi stray tibble]; }; @@ -20337,7 +20648,6 @@ in with self; { wfindr = derive2 { name="wfindr"; version="0.1.0"; sha256="0m5xj50hqdjj4lpbgx1kp3my4njr0nz09hd63rf4qf1ls8r7zil9"; depends=[dplyr magrittr]; }; wflo = derive2 { name="wflo"; version="1.9"; sha256="1lxndfm58jz9q7vg1w9jzdf0m3w504hsx7xcsjj78s9sn8d4a0xq"; depends=[emstreeR plotrix progress sf terra]; }; wgaim = derive2 { name="wgaim"; version="2.0-1"; sha256="1qiyfkpsbzjr9xsq5kqq6rlqpndngkn2irdfh3gyi45h6hn118j4"; depends=[ggplot2 qtl]; }; - wgeesel = derive2 { name="wgeesel"; version="1.5"; sha256="0lybvsq5168cjybzv2dbyx2z8aakcx7i7ivm8zc90haiispm9n5x"; depends=[bindata CRTgeeDR geepack MASS PoisNor]; }; whSample = derive2 { name="whSample"; version="0.9.6.2"; sha256="1dkw155xk36r9vmkqxlg2vw45nbpypivd8q5v3i5995biyib4l2k"; depends=[bit64 data_table dplyr magrittr openxlsx purrr]; }; whatthreewords = derive2 { name="whatthreewords"; version="0.1.3"; sha256="1shr4d1q2vallz251s6h0m2ncbx7lh0i194pm416q32ha0cz8ska"; depends=[dplyr httr2]; }; wheatmap = derive2 { name="wheatmap"; version="0.2.0"; sha256="064idlrnb85xxav39gp3n854fic6514khvazrf5d0x48crpzyvdp"; depends=[colorspace RColorBrewer]; }; @@ -20346,7 +20656,7 @@ in with self; { whereport = derive2 { name="whereport"; version="0.1"; sha256="1gdqzr2hrnpxbwl7cfps4m3xja8wkgwfs50i2nailybympvdnxm4"; depends=[dplyr]; }; whippr = derive2 { name="whippr"; version="0.1.3"; sha256="17r1wcgpriynpd3z7l6wa4al72x4ad07y1mr5jjafxgms6l554lx"; depends=[broom cli dplyr ggplot2 glue lubridate magrittr minpack_lm nlstools patchwork pillar purrr readxl rlang stringr tibble tidyr zoo]; }; whisker = derive2 { name="whisker"; version="0.4.1"; sha256="1g7jy6dnc5igs7yqy1n7cmy0ia8dm2yi3qj1mil2y0q88m4m2ldz"; depends=[]; }; - whitebox = derive2 { name="whitebox"; version="2.3.4"; sha256="044r2aczhr7l83xx00zwzlhr7mlqs9pwl6ix93j8ch19j2dcrsg5"; depends=[]; }; + whitebox = derive2 { name="whitebox"; version="2.4.0"; sha256="0bprfkqik3ix6lyfdq6wvp0xfbi1z539w4mm7bk1696s55sxnw27"; depends=[]; }; whitechapelR = derive2 { name="whitechapelR"; version="0.3.0"; sha256="0mnq5m59mw8w5g1p0h2xzlz738j397b3444km59bm5yln3j0nsbi"; depends=[igraph plyr]; }; whitening = derive2 { name="whitening"; version="1.4.0"; sha256="1gc5pf4b9s8w4jh1wygyb9a9w6hi4zfd7ivlwshhzrmb43x5srsp"; depends=[corpcor]; }; whitestrap = derive2 { name="whitestrap"; version="0.0.1"; sha256="1jcnxqxvkhyz9j6jay5834ncv5fxb9qiyyyj3b8al75mqknmn8ra"; depends=[]; }; @@ -20359,7 +20669,7 @@ in with self; { widyr = derive2 { name="widyr"; version="0.1.5"; sha256="05300hslrfpsqaxzzbmxgl2s2dz3wldpmnxh9hzgy97xkdc0c6fn"; depends=[broom dplyr Matrix purrr reshape2 rlang tibble tidyr tidytext]; }; wiesbaden = derive2 { name="wiesbaden"; version="1.2.9"; sha256="0sf61xrkzlk1pbjv1ha019nav20a5w1svx5jnsyck5050xxs2y06"; depends=[httr jsonlite keyring readr stringi stringr xml2]; }; wig = derive2 { name="wig"; version="0.1.0"; sha256="0gj8sxd5903h0rizd260ffskarywkvf87ck4ixf8gb1z1vgqf8i4"; depends=[dplyr magrittr stringr tibble]; }; - wikiTools = derive2 { name="wikiTools"; version="0.0.6"; sha256="1h0xi7vw2vzmarxfx0gdy895sh53mz4gj4zwrpynwc9d8cppx50q"; depends=[httr jsonlite ratelimitr WikidataQueryServiceR WikidataR]; }; + wikiTools = derive2 { name="wikiTools"; version="1.2.4"; sha256="1s6rssxalg3p4xfh1dc2igiqpiwyd8h5dlyfs5vwixn7pjyd3ac5"; depends=[httr jsonlite ratelimitr]; }; wikibooks = derive2 { name="wikibooks"; version="0.2.1"; sha256="1ws6spwxxcnjrzcngbr6n4hqy1di7s2h8iz6a62gyw84kpl542bw"; depends=[]; }; wikifacts = derive2 { name="wikifacts"; version="0.4.2"; sha256="1fw1chha6mcrmv1f9rjg01g84bgzkgf1h76l926brjs5gsn4i414"; depends=[magrittr rvest xml2]; }; wikilake = derive2 { name="wikilake"; version="0.7.0"; sha256="0niym9azy4qzcr4rriw0bfd97scx1mdpx67szinj7qsh569xb61m"; depends=[dplyr maps rvest selectr sp stringi stringr tidyr units WikipediR xml2]; }; @@ -20371,15 +20681,15 @@ in with self; { wildlifeDI = derive2 { name="wildlifeDI"; version="1.0.0"; sha256="1jl21mnsl993fc3y9z56zb8yfz3j0hvg8f9q69ghlicx139mik0m"; depends=[adehabitatLT dplyr lwgeom move2 sf sp units]; }; wildmeta = derive2 { name="wildmeta"; version="0.3.2"; sha256="1ixrajbxmlsr8xniagywlfd8knik7c93phvsdbpas0k8ai7wfv9r"; depends=[clubSandwich metafor robumeta sandwich]; }; wildpoker = derive2 { name="wildpoker"; version="1.1"; sha256="1302ain55spz34irmq49sp9b1pvrn2nxmzmqs8m9wdk6g82h3s27"; depends=[]; }; - wildrwolf = derive2 { name="wildrwolf"; version="0.6.1"; sha256="1cl3rv8v3y8y86cl6y5da63qkzha37f20naaqrypk65rn47savig"; depends=[dreamerr fabricatr fixest fwildclusterboot MASS]; }; wilson = derive2 { name="wilson"; version="2.4.2"; sha256="050hi6rigs024is1ry0yymqapgqfhzpp0ghk5ya028k71k22lksx"; depends=[circlize colourpicker ComplexHeatmap data_table DESeq2 DT factoextra FactoMineR ggplot2 ggrepel gplots heatmaply log4r openssl plotly plyr R6 RColorBrewer reshape rintrojs rje rjson RJSONIO scales shiny shinycssloaders shinydashboard shinyjs shinyWidgets viridis zip]; }; winch = derive2 { name="winch"; version="0.1.1"; sha256="1ib3qz09r40gwxvzsapi6xs80phxxn2x04f6vgsvrbplfy5nxg6k"; depends=[lifecycle procmaps]; }; windAC = derive2 { name="windAC"; version="1.2.10"; sha256="077kl7j1db0g2pnr7gc91x2anbw80y5sbl4gy49rzclbhhnwjlrs"; depends=[mvtnorm sf]; }; - windex = derive2 { name="windex"; version="2.0.7"; sha256="0dhan3wqfr5997kmpl6visijij15a53swc9dcv90ymd5l7minvdr"; depends=[ape geiger phangorn phytools scatterplot3d]; }; + windex = derive2 { name="windex"; version="2.0.8"; sha256="0i8qvgc9r8j082m93bsvl082h32bsvjwqzmyn8cb6qnpynn4k2a0"; depends=[ape geiger phangorn phytools scatterplot3d]; }; windows_pls = derive2 { name="windows.pls"; version="0.1.0"; sha256="1n8az7zsbj2xlgkws7rfnk4ihnj1lchsjvglm7qnkrmjchj8asmn"; depends=[dplyr ggplot2 mdatools readr stringr tidyr tidyverse]; }; windsoraiR = derive2 { name="windsoraiR"; version="0.1.2"; sha256="1smd3zw5ra1fba6mds3diadcmbw59jlvmrvfzzi4fss91wv50jql"; depends=[jsonlite]; }; winfapReader = derive2 { name="winfapReader"; version="0.1-5"; sha256="01hc0kcm7qfzk47rci6lfmrqs4zfj8z7abqydgi2ckq8n1k2pd0h"; depends=[lubridate]; }; - wingen = derive2 { name="wingen"; version="2.1.1"; sha256="1jd2zk3qrhj0k1n63qv60212ap1b5rk37h39i29b0vfx5sl0flqq"; depends=[automap crayon dplyr furrr gdistance ggplot2 hierfstat magrittr pegas purrr raster rlang sf terra tidyr tidyselect vcfR viridis]; }; + wingen = derive2 { name="wingen"; version="2.1.2"; sha256="0a4lhsvwd1jh48nb2b6nxkybp4j5pblf94j8pmx6v2yq11k2ddki"; depends=[automap crayon dplyr furrr gdistance ggplot2 hierfstat magrittr pegas purrr raster rlang sf terra tidyr tidyselect vcfR viridis]; }; + winputall = derive2 { name="winputall"; version="1.0.1"; sha256="17jwnnzy5a38a2n9ixhs8vk8ybq2a8lhjv5hfx4dwdg73iklnmib"; depends=[BH dplyr future future_apply ks LearnBayes MASS Matrix matrixcalc matrixStats plm Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; wiqid = derive2 { name="wiqid"; version="0.3.3"; sha256="1d5bckkr6cnixccxaa14n7vbsya5cc00y9mryy1j69shhsmxp5ks"; depends=[coda HDInterval MASS mcmcOutput plotrix truncnorm]; }; withdots = derive2 { name="withdots"; version="0.1.1"; sha256="0vpbw9swyi8qf5s2nlml9pdmrzvwn4rpm4gbfsc0vikbzp29dmvi"; depends=[]; }; withr = derive2 { name="withr"; version="3.0.0"; sha256="1rz0pgm1bg3cnc09s8q8yyg83lmf8bv9arlasciqqr0fdpgfwy4c"; depends=[]; }; @@ -20389,8 +20699,8 @@ in with self; { wkutils = derive2 { name="wkutils"; version="0.1.3"; sha256="01gsvyzxd89j979zdm8q159wgkha277xwsn097ja5absxlny6991"; depends=[Rcpp tibble vctrs wk]; }; wmm = derive2 { name="wmm"; version="1.1.1"; sha256="0qy4cp4d8nlcqlcs4mqjv1f1kf1yh9y2wvh1ak6f049qlj7yfwfb"; depends=[]; }; wmwpow = derive2 { name="wmwpow"; version="0.1.3"; sha256="03rd75r4wih1w7srhnwqxjkirisb43y1sd2f1wzixqj8lq0dmb25"; depends=[lamW MASS smoothmest]; }; - wnl = derive2 { name="wnl"; version="0.8.0"; sha256="06vq8pwszh3nplh7j7lb65amnf0l0pzsnpg1icsyralc8gmzv91h"; depends=[numDeriv]; }; - wnominate = derive2 { name="wnominate"; version="1.4"; sha256="1zidc30j3hqa54spafz2h27a719s347k4i6qqs2jy9zk0ngrgiqz"; depends=[pscl]; }; + wnl = derive2 { name="wnl"; version="0.8.1"; sha256="1jsizbn4kampn8gqm3ry0m6a5sv9nb8adih8a7pnd2g3h0rjm7lx"; depends=[numDeriv]; }; + wnominate = derive2 { name="wnominate"; version="1.5"; sha256="1lqz57438ikcbf2smi54qavwnw6p27qqh0ri33ijyzmcl6yakncg"; depends=[pscl]; }; wodds = derive2 { name="wodds"; version="0.1.0"; sha256="00rk7wmz0rknh4v9p0r6syi1c5dch7wkq7cz9zg6n8d72sia4azv"; depends=[dplyr glue magrittr purrr tibble]; }; woe = derive2 { name="woe"; version="0.2"; sha256="15mvcmwnrqxpzn054lq85vyzq5rgxkiwbd40gnn4s3ny1xdrwgsm"; depends=[]; }; woeBinning = derive2 { name="woeBinning"; version="0.1.6"; sha256="0x890h5fh59n54587adyzphr956fkg3px8i7c378aq1fs7k35gxs"; depends=[]; }; @@ -20401,11 +20711,10 @@ in with self; { word_alignment = derive2 { name="word.alignment"; version="1.1"; sha256="0inlq96j4zkjncz2v66amz91l5y3b5lx49qi2jg6jbqdldw7aa02"; depends=[data_table openxlsx]; }; word2vec = derive2 { name="word2vec"; version="0.4.0"; sha256="14ba0cj430d02bd6fay3nl4ldwqyj77iwjm4gzgdc0f6sx597iiq"; depends=[Rcpp RcppProgress]; }; wordPuzzleR = derive2 { name="wordPuzzleR"; version="0.1.1"; sha256="04cxniagz9y2szq2b9qhz8lfjsmbdc6d928rfayy22yigy6mwi1i"; depends=[purrr scales stringr]; }; - wordbankr = derive2 { name="wordbankr"; version="1.0.3"; sha256="1c09nj9gx71an6w6l4z4g08xpp8a36kygh4q140gi19d36ywjdra"; depends=[assertthat DBI dbplyr dplyr glue jsonlite lifecycle purrr quantregGrowth rlang RMySQL robustbase stringr tidyr]; }; wordcloud = derive2 { name="wordcloud"; version="2.6"; sha256="0j96yyvm6bcrrpbdx4w26piqx44a0vbsr3px9cb4zk8a8da6jwak"; depends=[RColorBrewer Rcpp]; }; wordcloud2 = derive2 { name="wordcloud2"; version="0.2.1"; sha256="1a2q42bn65q4idxq0vxysyam16q6c18inxv4dqhfy0x52j8z9x6k"; depends=[base64enc htmlwidgets]; }; wordler = derive2 { name="wordler"; version="0.3.1"; sha256="0pvnijh2gvwjbd86ivky0zbi8y1x40xazsv2bdy5s2rfsscf4l88"; depends=[crayon]; }; - wordnet = derive2 { name="wordnet"; version="0.1-16"; sha256="0biivpg3zkjr5ccjricsj9cw14a2a4n4cri6gcl9m1r9amhh54iv"; depends=[rJava]; }; + wordnet = derive2 { name="wordnet"; version="0.1-17"; sha256="1m08k2z7a1zf41n8gnffv6q3b3rgssw3smdwy7v9fjvngf04w7ax"; depends=[rJava]; }; wordpiece = derive2 { name="wordpiece"; version="2.1.3"; sha256="1xg9xsaqpz5l2f2vk1qnc7cwplnwvv6jl9wbdg0f92klhk1nanyp"; depends=[dlr fastmatch memoise piecemaker rlang stringi wordpiece_data]; }; wordpiece_data = derive2 { name="wordpiece.data"; version="2.0.0"; sha256="0x5m8vkszxpz8mf9pblzm39wpaa247336zkja560zsqgzdvcj3hx"; depends=[]; }; wordpredictor = derive2 { name="wordpredictor"; version="0.0.3"; sha256="0079nkjimzz07yzqx8ksgk7isi0b5j1nxmisicbc8qvsamirm68v"; depends=[digest dplyr ggplot2 patchwork SnowballC stringr]; }; @@ -20422,8 +20731,7 @@ in with self; { worrrd = derive2 { name="worrrd"; version="0.1.0"; sha256="1czzm30xwssjrhw7kqw23d2s03v9lbwa0crld9qf9q80h5zc0kxi"; depends=[cowplot dplyr ggfittext ggplot2 ggtext glue magrittr purrr stringr tibble yaml]; }; wosr = derive2 { name="wosr"; version="0.3.0"; sha256="0fl9mizrjg3r7n7gslsxgaw3k2v63scqmvnv6341q8sq7018hzln"; depends=[httr jsonlite pbapply xml2]; }; wowa = derive2 { name="wowa"; version="1.0.2"; sha256="0i677bzgd9qx57x7n7qsaqpacgpap2d0n8gq1lc9hsmg13bs2v8f"; depends=[Rcpp]; }; - woylier = derive2 { name="woylier"; version="0.0.5"; sha256="1xa2qdkkqnd6c98a15rfsa3m8jil7gipr4mann3dhkf0zl59g0a4"; depends=[dplyr geozoo tibble tourr]; }; - wpa = derive2 { name="wpa"; version="1.9.0"; sha256="0pdvj8q74dd7z3xdp4cb2j85jfhiljvribr23n99k7bi6kdxwyxi"; depends=[data_table dplyr DT ggplot2 ggraph ggrepel ggwordcloud htmltools igraph magrittr markdown networkD3 proxy purrr reshape2 rmarkdown scales tidyr tidyselect tidytext]; }; + wpa = derive2 { name="wpa"; version="1.9.1"; sha256="0likivdwxl66nj6wxkcssqgz8slhagbw9qhxbxwsw10gyq4769rb"; depends=[data_table dplyr DT ggplot2 ggraph ggrepel ggwordcloud htmltools igraph magrittr markdown networkD3 proxy purrr reshape2 rmarkdown scales tidyr tidyselect tidytext]; }; wpp2008 = derive2 { name="wpp2008"; version="1.0-1"; sha256="0gd3vjw1fpzhp3qlf1jpc24f76i0pxsjs5pb1v3k2si6df7q4msd"; depends=[]; }; wpp2010 = derive2 { name="wpp2010"; version="1.2-0"; sha256="1h87r1cn4lnx80dprvawsyzfkriscqjgr27gvv7n19wvsx8qd57k"; depends=[]; }; wpp2012 = derive2 { name="wpp2012"; version="2.2-1"; sha256="00283s4r36zzwn67fydrl7ldg6jhn14qkf47h0ifmsky95bd1n5k"; depends=[]; }; @@ -20431,15 +20739,15 @@ in with self; { wpp2017 = derive2 { name="wpp2017"; version="1.2-3"; sha256="1w7cg31larvgaah16ch6z11jjq02i5f20hfwg63wvw5p6fyafivz"; depends=[data_table]; }; wpp2019 = derive2 { name="wpp2019"; version="1.1-1"; sha256="12h1z082xs9l58v69nilaqhdgz5jd0c90p85szibfzhfb7vs6xl5"; depends=[data_table]; }; wppExplorer = derive2 { name="wppExplorer"; version="2.3-4"; sha256="1pbmjg6y543aih8mxf9njfwpm090virhgqf8w0a5yx0jdfjwmz04"; depends=[DT ggplot2 googleVis Hmisc plyr reshape2 shiny shinyjs shinythemes wpp2019]; }; - wql = derive2 { name="wql"; version="1.0.0"; sha256="1s702gvwx49wky2ylh8q5h1vmh6sls2pq69w6jcijh1qs587dngs"; depends=[ggplot2 reshape2 zoo]; }; + wql = derive2 { name="wql"; version="1.0.1"; sha256="1n28n7ijfypnqk7cwnvmkzhvp65sh7b00a9c2z72kdbxha0yn74w"; depends=[ggplot2 reshape2 zoo]; }; wqs = derive2 { name="wqs"; version="0.0.1"; sha256="14qaa9g9v4nqrv897laflib3wwhflyfaf9wpllmbi5xfv9223rcg"; depends=[glm2 Rsolnp]; }; wqspt = derive2 { name="wqspt"; version="1.0.1"; sha256="1xd588kw171djx7q21b2jjarhbzd4i0gx7ccv1j1wyl95yzq07ba"; depends=[cowplot extraDistr ggplot2 gWQS mvtnorm pbapply rlang viridis]; }; wqtrends = derive2 { name="wqtrends"; version="1.4.2"; sha256="17hgh4kp5nlq5n8nrd0zrjj87rlk8ny67nbdlqnr9q0y5yxbyw63"; depends=[dplyr ggplot2 lubridate mgcv mixmeta plotly purrr tibble tidyr viridisLite]; }; wrGraph = derive2 { name="wrGraph"; version="1.3.7"; sha256="127s4i73ww817q9k7x463633rlk8fj0kjvpwqwcaxswdc7a3ks7b"; depends=[lattice RColorBrewer wrMisc]; }; - wrMisc = derive2 { name="wrMisc"; version="1.14.2"; sha256="0y8g33vsrlzr6x0mpk7vr01wbv96w4xhg8byvmi817lwvmfzl5pm"; depends=[MASS]; }; + wrMisc = derive2 { name="wrMisc"; version="1.15.0.3"; sha256="0680lxkwyxyy0ks3cyp41gxkv7vjf235mwml5ixk07rkin195w9c"; depends=[MASS]; }; wrProteo = derive2 { name="wrProteo"; version="1.11.0.1"; sha256="0v9a62r4881aax5h5mnzgjzk2mgkrfa14lvy2w8i9mhcz5q6dg7k"; depends=[knitr limma wrMisc]; }; wrTopDownFrag = derive2 { name="wrTopDownFrag"; version="1.0.2"; sha256="1rdg6rzjz2h514i3c8z89mvj2j3h1s7rr5fry2mq3xvrwrgd3738"; depends=[wrMisc wrProteo]; }; - wrangle = derive2 { name="wrangle"; version="0.6.3"; sha256="11bryvsggjphcrz7a92xanx9wcnaxmgm503ns9yq3nxfpyvxfgvf"; depends=[dplyr magrittr rlang tidyr]; }; + wrangle = derive2 { name="wrangle"; version="0.6.4"; sha256="04l9m3x0yj5nccqpyaxd55dzw7mk2kjyrsysn680wx98jhwj05b2"; depends=[dplyr magrittr rlang tidyr]; }; wrappedtools = derive2 { name="wrappedtools"; version="0.9.5"; sha256="1rpbfsh8cs07icc8440rmcmgwzjwrax86hk7hx7zwmsjigap3pxi"; depends=[boot broom coin DescTools dplyr flextable forcats ggplot2 glue kableExtra knitr lifecycle purrr rlang rlist stringr tibble tidyr]; }; wrappr = derive2 { name="wrappr"; version="0.1.0"; sha256="0n60var32fyk40mgk6crq565qcpif8cbgmqkqkl0a2ip1l0vrs30"; depends=[]; }; wrapr = derive2 { name="wrapr"; version="2.1.0"; sha256="1r2mqgf4wiwx83lgs20r59c3h7yynkaif4qp6lbd20y06avb1jz1"; depends=[]; }; @@ -20447,7 +20755,7 @@ in with self; { write_snns = derive2 { name="write.snns"; version="0.0-4.2"; sha256="0sxg7z8rnh4lssbivkrfxldv4ivy37wkndzzndpbvq2gbvbjnp4l"; depends=[]; }; writexl = derive2 { name="writexl"; version="1.5.0"; sha256="1kkd17xw7giy1k2azw1xnagka7ihicp17bi7nzlm3gqay1cdqlz2"; depends=[]; }; wrswoR = derive2 { name="wrswoR"; version="1.1.1"; sha256="1q0nc08q8f3kl9yvcivzylykk1ar5j5dw3ian2y9nrzgzri5l10i"; depends=[logging Rcpp]; }; - wru = derive2 { name="wru"; version="3.0.1"; sha256="13vxhipyy5cl3i0gn7d8f5ljn0qxhjh35gy5kj2i2yczp1sfrnq1"; depends=[cli dplyr furrr future piggyback PL94171 purrr Rcpp RcppArmadillo rlang tidyr]; }; + wru = derive2 { name="wru"; version="3.0.3"; sha256="1d8k9bmzwg11ypkhhcnj2l6i2qnk13a09la0nc713nlwc21zqc44"; depends=[cli dplyr furrr future piggyback PL94171 purrr Rcpp RcppArmadillo rlang tidyr]; }; wsbackfit = derive2 { name="wsbackfit"; version="1.0-5"; sha256="18y2r6v19a4lnpa3y2q0whm5kizmd29r0abj7rcirb9fd5jqrsp2"; depends=[]; }; wsjplot = derive2 { name="wsjplot"; version="0.1.0"; sha256="1vgf823j3ychdnvg4nq59ah4rkv5lpwbg0r7sijir2b18sgxsrbi"; depends=[dplyr ggplot2 magrittr scales stringr]; }; wskm = derive2 { name="wskm"; version="1.4.40"; sha256="0x5nc3bwqawx0k95v088dsx83dm7lw5lkryjvq6bl57bgrcn7n0l"; depends=[fpc lattice latticeExtra]; }; @@ -20457,7 +20765,7 @@ in with self; { wtest = derive2 { name="wtest"; version="3.2"; sha256="063ax9mbb2dy33l1cl533mjzpvhf2akw3613pklfjg6bhprlniz7"; depends=[]; }; wv = derive2 { name="wv"; version="0.1.2"; sha256="0dx33bs05k6zi6rnk12v6z2l2pvvx2jdl99vafbpyydf0ls4ppbk"; depends=[coda Rcpp RcppArmadillo simts]; }; wwntests = derive2 { name="wwntests"; version="1.1.0"; sha256="0bs0i66ydy5zg66nwhniqzd000rc5qcmkliqpb3f9n749x2sj2f6"; depends=[fda ftsa MASS rainbow sde]; }; - wxgenR = derive2 { name="wxgenR"; version="1.3.6"; sha256="1q9rfkb2iv0h1pcra0jg3s8xp57fhxfyn000sgf5gf67k62ia32x"; depends=[doParallel dplyr foreach lubridate magrittr msm plyr sm]; }; + wxgenR = derive2 { name="wxgenR"; version="1.4.0"; sha256="00i89r7299psykl1pgaxp3hmkx7na0g9m0yh4gp68cnp6xla7wxh"; depends=[doParallel dplyr foreach lubridate magrittr msm plyr sm]; }; wyz_code_metaTesting = derive2 { name="wyz.code.metaTesting"; version="1.1.22"; sha256="0xhcqqvh0lkw9mqdrib0q1inwgla5y9ayjc6pdkix6ckabfybagg"; depends=[crayon data_table tidyr wyz_code_offensiveProgramming]; }; wyz_code_offensiveProgramming = derive2 { name="wyz.code.offensiveProgramming"; version="1.1.24"; sha256="1q3yn5yp2qlzqg1xpxlkpdkiij4kzwn9yj8mc9xxx4bxnbspkakq"; depends=[crayon data_table R6 stringr tidyr]; }; wyz_code_rdoc = derive2 { name="wyz.code.rdoc"; version="1.1.19"; sha256="02k6wk45dn6i8kzxhgcxqxvrzxf063dny17jjnj83wsxx2b37jgv"; depends=[crayon data_table digest R6 stringr tidyr wyz_code_offensiveProgramming]; }; @@ -20472,7 +20780,7 @@ in with self; { xVA = derive2 { name="xVA"; version="1.1"; sha256="06y9qhly14y5r8d1g85jdzz8x5lwzfjkiy5zak6146mknl4nzz11"; depends=[data_table SACCR Trading]; }; xadmix = derive2 { name="xadmix"; version="1.0.0"; sha256="0vrk40q9nn40aisvgj3pq9q6z5kb68j614wpg7bx98fx3gqnxzxv"; depends=[dplyr forcats ggplot2 magrittr rlang stringr tidyr viridis]; }; xaringan = derive2 { name="xaringan"; version="0.30"; sha256="0gz52xwxa1w5im3rns805mgfagaqg9f8whjsrsk0yv9kc3j7mc5i"; depends=[htmltools knitr rmarkdown servr xfun]; }; - xaringanExtra = derive2 { name="xaringanExtra"; version="0.7.0"; sha256="1snj4yf5mxn419d3qbm2pixj7gvhmf133sxvjbirjrr3ib6iyn84"; depends=[htmltools jsonlite knitr uuid]; }; + xaringanExtra = derive2 { name="xaringanExtra"; version="0.8.0"; sha256="1w5j5lhp7vckx4pj2xy4q5kyw7yhdxfqnawl5ipbxj6cbsxq7js5"; depends=[htmltools jsonlite knitr uuid]; }; xaringanthemer = derive2 { name="xaringanthemer"; version="0.4.2"; sha256="074lq9m61647ac7crjmpf8qjj4l60ps0ic4c4b83g47drar79v2z"; depends=[colorspace glue purrr whisker]; }; xdcclarge = derive2 { name="xdcclarge"; version="0.1.0"; sha256="1j8wsidwmfjygqlwavxinv4bqc6rddy42jdmlknsjfrrs49yj8kn"; depends=[nlshrink Rcpp RcppArmadillo]; }; xefun = derive2 { name="xefun"; version="0.1.5"; sha256="0rzd9xi5hxxbydzg67h17zb1q9qmw1y9790vy04k6kj444apxc2j"; depends=[data_table]; }; @@ -20488,7 +20796,7 @@ in with self; { xegaSelectGene = derive2 { name="xegaSelectGene"; version="1.0.0.0"; sha256="1vrs5d1p6x1c3n9pv6556185rx1a01zdsjqx8y5vpa37f8di7iwk"; depends=[]; }; xergm_common = derive2 { name="xergm.common"; version="1.7.8"; sha256="03mjpafwfkmyj5ba84jydap9rp0i602izjlbd511xbxcw6dx2k0b"; depends=[ergm network]; }; xesreadR = derive2 { name="xesreadR"; version="0.2.3"; sha256="1pvdx0mxg2f885bhy4hb3kqzcgva4q7hzzaipkfzyi5lnjdsbc81"; depends=[bupaR data_table dplyr lubridate purrr stringr tidyr XML xml2]; }; - xfun = derive2 { name="xfun"; version="0.42"; sha256="02kmlp5hzkcs35hwbvz06178i9rn96yfh93n6swzr89b47nzmfq7"; depends=[]; }; + xfun = derive2 { name="xfun"; version="0.45"; sha256="049nk6h9xbdn2i6m07s26rqn790adww2y6mya03v95yj5xfg05iq"; depends=[]; }; xgb2sql = derive2 { name="xgb2sql"; version="0.1.2"; sha256="1gw5dw0ck5hip8mv347zaswrggk395bg2hgn02bvqs0d31jhmgvi"; depends=[data_table xgboost]; }; xgboost = derive2 { name="xgboost"; version="1.7.7.1"; sha256="08wpxr8jkzsqb5zaw43bmq5r7k3jnb1ibjkliwh2ffjq7b7jr4gp"; depends=[data_table jsonlite Matrix]; }; xgrove = derive2 { name="xgrove"; version="0.1-7"; sha256="0sfnylzpgqsg7jvcy9yjywj13zl6np59qiciw0yr8fm4d91sxwnh"; depends=[dplyr gbm rpart rpart_plot]; }; @@ -20496,6 +20804,7 @@ in with self; { xhaz = derive2 { name="xhaz"; version="2.0.1"; sha256="1kipqscniyb4s7p29pdkg8hg95wb78jpnax8qh058vzrk5vqz181"; depends=[gtools numDeriv optimParallel statmod stringr survexp_fr survival]; }; xkcd = derive2 { name="xkcd"; version="0.0.6"; sha256="1z2y0ihn68ppay7xkglhw7djki5654g6z4bbpyy41if57z9q554f"; depends=[extrafont ggplot2 Hmisc]; }; xkcdcolors = derive2 { name="xkcdcolors"; version="1.0"; sha256="07fnjv01r3b951dqca2zs9b9f6hsgbpbpsrggvb8rps53kpid0i7"; depends=[FNN]; }; + xlcharts = derive2 { name="xlcharts"; version="0.0.2"; sha256="0kh6d0b6wlsf41dc5pbb9yns416svx8a7ls3vh1dq4hrsaxw9wjh"; depends=[reticulate writexl]; }; xlcutter = derive2 { name="xlcutter"; version="0.1.1"; sha256="07gjsz8jab5f2c1v7rcfv9pva8hikdl94nzvixvg6v0a7sq7qa6h"; depends=[tidyxl]; }; xlink = derive2 { name="xlink"; version="1.0.1"; sha256="02ahgjampy92gcwhv269px5w8651a7j50dn1295zwqxj44lk4g9q"; depends=[survival]; }; xlsx = derive2 { name="xlsx"; version="0.6.5"; sha256="01r1ngdm51w18bdan8h94r91m731knkf04zal4g67mx3fpa5x31p"; depends=[rJava xlsxjars]; }; @@ -20508,32 +20817,32 @@ in with self; { xmlparsedata = derive2 { name="xmlparsedata"; version="1.0.5"; sha256="1c6bnz3ng1qw7sfip8wq3a4dn36a4d6rbja0sadn0a4pbsmk8q3n"; depends=[]; }; xmlr = derive2 { name="xmlr"; version="0.1.2"; sha256="00mxdb4899sx5py0ngzh3dvhz1sqsar2hmsrkm4jf0b3q9psc86w"; depends=[]; }; xmlrpc2 = derive2 { name="xmlrpc2"; version="1.1"; sha256="13rfw0civp3hzi4hn31x1idliid1qb73495x4c31z5msd35lzxrs"; depends=[base64enc curl xml2]; }; - xmpdf = derive2 { name="xmpdf"; version="0.1.4"; sha256="0hqk40zwwxkx0zhw2a1phm49lwlwsbphhb3g87b1vvy3xsxilph6"; depends=[datetimeoffset jsonlite purrr R6 rlang]; }; + xmpdf = derive2 { name="xmpdf"; version="0.2.1"; sha256="0pma8njk77ggpky6m4l9p7n7ardy41lsn0q67wkgr0mwgjjyil7w"; depends=[brio datetimeoffset jsonlite purrr R6 rlang stringi]; }; xmrr = derive2 { name="xmrr"; version="1.1.1"; sha256="1kb4kzxb9rcx9fp1answln0sv9c3wdrk82gz79k0i9ypq7dls2ah"; depends=[dplyr ggplot2 purrr qpdf rlang tibble tidyr]; }; xnet = derive2 { name="xnet"; version="0.1.11"; sha256="18lda1gv53awsbkk5p4bzrbilndgybdz8xc6lhl6wy647fw9q9hv"; depends=[]; }; xoi = derive2 { name="xoi"; version="0.72"; sha256="0q1q43540qz97qad36dcwmcmgdci3sbhxk9li897gnjv9gjazdlr"; depends=[qtl]; }; - xopen = derive2 { name="xopen"; version="1.0.0"; sha256="1vrvgdika1d63dwygynbv2wmd87ll8dji5dy89hj576n8hw601z2"; depends=[processx]; }; + xopen = derive2 { name="xopen"; version="1.0.1"; sha256="1v4sna4md4cpqwi7802m4mfflgi506fxh78la0kam894qfw7icp3"; depends=[processx]; }; xpectr = derive2 { name="xpectr"; version="0.4.3"; sha256="0qpv2r4dz5g37v2b6y5jscsxm1hdmimq8pm0dwwf8df0pp351r3b"; depends=[checkmate clipr dplyr fansi lifecycle plyr rlang rstudioapi testthat tibble withr]; }; xplain = derive2 { name="xplain"; version="0.2.2"; sha256="152a83ckmhns6yniy87mmjva5bkv5x3phv63l1kkcmrr9bclfgz0"; depends=[httr RCurl readr XML]; }; xplorerr = derive2 { name="xplorerr"; version="0.1.2"; sha256="0sca6nngjs6f51di4dgzx868p75bzas0msr0kgivavsv6rj5fz0r"; depends=[Rcpp shiny]; }; - xportr = derive2 { name="xportr"; version="0.3.2"; sha256="1gj325cmx0p3ppkxc7grybi6pcq7dvdnglj0qfyxvard78majqpl"; depends=[cli dplyr glue haven lifecycle magrittr purrr readr rlang stringr tidyselect]; }; + xportr = derive2 { name="xportr"; version="0.4.0"; sha256="0yxd94qr30lq8pmkc7cfxccnq5ln1sawk8bxpv1v29hgafnr2wgv"; depends=[checkmate cli dplyr glue haven lifecycle magrittr purrr readr rlang stringr tidyselect]; }; xpose = derive2 { name="xpose"; version="0.4.18"; sha256="18l8dcg9zng47gzmyxf3ksz22xqxsyqz64bqlxg2yl6d068sk3k9"; depends=[dplyr ggforce ggplot2 purrr readr rlang stringr tibble tidyr vpc]; }; xpose_nlmixr2 = derive2 { name="xpose.nlmixr2"; version="0.4.0"; sha256="0scq6brd7sn1ybmacxlpdlmkwxbn9sc2gpzw6438fwfjss6sza8s"; depends=[crayon dplyr ggplot2 magrittr nlmixr2est rlang stringr tibble tidyr vpc xpose]; }; xpose4 = derive2 { name="xpose4"; version="4.7.3"; sha256="0w670g9y8nsdjcdxnvwpx8j9yfr7xhb5x3a171z1xizdfgpcpjxz"; depends=[dplyr gam Hmisc lattice lazyeval readr survival tibble]; }; xray = derive2 { name="xray"; version="0.2"; sha256="1ibj92ljlj8a5rmbrci691yhpd4kwrfyl944nzl2dcbf58l01dzq"; depends=[dplyr foreach ggplot2 lubridate scales]; }; xrf = derive2 { name="xrf"; version="0.2.2"; sha256="0917chdkl6b20fdbwwj5b6wyihn9p444anwjspd0zqxmp8ag0i5f"; depends=[dplyr fuzzyjoin glmnet Matrix rlang xgboost]; }; xrnet = derive2 { name="xrnet"; version="0.1.7"; sha256="136aadrvsdg9hizjg4q12h56ih0s3w88j3jpfb54ajgdmqw3pldi"; depends=[BH bigmemory foreach Rcpp RcppEigen]; }; - xslt = derive2 { name="xslt"; version="1.4.4"; sha256="0caci3mhqkl1bg1pzjhi22c431vgcy4ibsg2mg1p9d5c5pzwmak4"; depends=[Rcpp xml2]; }; + xslt = derive2 { name="xslt"; version="1.4.5"; sha256="03blm5sa4dw44i2gp015y349hw424r2ykwdn992dblwn6k6sgqxk"; depends=[Rcpp xml2]; }; xsp = derive2 { name="xsp"; version="0.1.2"; sha256="1jbmxa234v52qji8sz4bkg24c2n65b0zh9py1wyyfzw9n1wx5w0r"; depends=[ggplot2 reshape2]; }; xtable = derive2 { name="xtable"; version="1.8-4"; sha256="077xfm0gphvhsay75amd9v90zk57kjgrrlgih04fyrbqqblc1gjs"; depends=[]; }; - xtal = derive2 { name="xtal"; version="1.15"; sha256="1zq3vd5x3vw6acn47yd2x7kflr9sm3znmdkm68cs64ha54jbl3vs"; depends=[]; }; xtranat = derive2 { name="xtranat"; version="0.1.0"; sha256="1gv0kc1gj305iwwhv7wrfrh45rqwaks696q6q39a55m2vxw11xl1"; depends=[]; }; - xts = derive2 { name="xts"; version="0.13.2"; sha256="1yqx1x395hvdav1fvmpwrfm8sir398ky1bi0x5zsm7acbkv91maa"; depends=[zoo]; }; + xts = derive2 { name="xts"; version="0.14.0"; sha256="1nfgbwzibzjni2p8ssvrsyhf75y1g53j1z6kp8ashxlqzbp1d2yj"; depends=[zoo]; }; xtsum = derive2 { name="xtsum"; version="0.1.0"; sha256="0vq3rm0rwmqyilq7056swlwg2vqq2rpmqsx5apg0imkjq1p26vcb"; depends=[dplyr kableExtra knitr magrittr plm rlang sampleSelection]; }; xtune = derive2 { name="xtune"; version="2.0.0"; sha256="0k5cf7n84j73cdxzfr7ijjxc65h6lx6fjry81rsxa80fn0sn8qiz"; depends=[crayon glmnet lbfgs selectiveInference]; }; xutils = derive2 { name="xutils"; version="0.0.2"; sha256="1h07gs8pj7hn64r35ld1j1zakc243aiiwdrz92viqrg7z75czdzl"; depends=[Rcpp]; }; xwf = derive2 { name="xwf"; version="0.2-3"; sha256="1byj6vjk2abm9j919107xsa3nd40zbsvxaldvv4ml3c47k1fg3kc"; depends=[mgcv]; }; xxIRT = derive2 { name="xxIRT"; version="2.1.2"; sha256="0b8yv8ixmcjiv9hlvpfdknx815smy7df7f2ixifnvhxxafgf1fwq"; depends=[ggplot2 glpkAPI lpSolveAPI reshape2]; }; + xxdi = derive2 { name="xxdi"; version="1.0.0"; sha256="1xvx9z24xrqfhpgzfdvscscg3lcjsy6abrw60amcww36sl41fas2"; depends=[agop ggplot2 Matrix tidyr]; }; xxhashlite = derive2 { name="xxhashlite"; version="0.2.2"; sha256="088cndqrwgqx2yxc6qsfvfqlxw2404ycdajgz9maz15p7h3sjh9z"; depends=[]; }; yaConsensus = derive2 { name="yaConsensus"; version="1.0"; sha256="1srph1yc8lr00yvx6sjm0br9h2cq94xqb9yjxfb0bqvvmskp6s2s"; depends=[doParallel foreach pheatmap]; }; yaImpute = derive2 { name="yaImpute"; version="1.0-34"; sha256="0wwaibplh4p8lwz5ck63jrdg9jaxr1w9q8xwpf048y6abz4rij5l"; depends=[]; }; @@ -20541,14 +20850,14 @@ in with self; { yager = derive2 { name="yager"; version="0.1.1"; sha256="178ypdr3f0w9rb4ci8q2hshr62b7993m8q6zxc4pf0msq175n1ml"; depends=[lhs MLmetrics randtoolbox]; }; yahoofinancer = derive2 { name="yahoofinancer"; version="0.3.0"; sha256="197pidwi69hqrw6qpjg5d2y5mqp2rma4p8wsr2h51957qqql4z5d"; depends=[curl httr jsonlite lubridate magrittr purrr R6 stringr]; }; yaml = derive2 { name="yaml"; version="2.3.8"; sha256="1n1zlbnq3ldipnnm08whpvm8r21vxg4c9jzg7x7j3blw2pi7kl4y"; depends=[]; }; - yamlet = derive2 { name="yamlet"; version="1.0.0"; sha256="18n462s4w80zfj3nq5xc5n03dr7qlv6275gqsa3fyaymy1knz5nf"; depends=[csv dplyr encode ggplot2 knitr pillar rlang scales spork tidyr units vctrs xtable yaml]; }; + yamlet = derive2 { name="yamlet"; version="1.0.3"; sha256="06nkxzc5g6asznib73g22710i5dvk4vmmjg2yvnxnf27fyx1s6aq"; depends=[csv dplyr encode ggplot2 knitr pillar rlang scales spork tidyr units vctrs xtable yaml]; }; yamlme = derive2 { name="yamlme"; version="0.1.2"; sha256="1019nzchqif4r3c7ywq23bjx711g359q44s8jy0rxyv03rij6xh9"; depends=[rmarkdown yaml]; }; yardstick = derive2 { name="yardstick"; version="1.3.1"; sha256="1l6s06sj9hpb20xndnmm8xim9c9h444w6g98b56i5whb11x37d18"; depends=[cli dplyr generics hardhat lifecycle rlang tibble tidyselect vctrs withr]; }; yarr = derive2 { name="yarr"; version="0.1.2"; sha256="16q109jrydckz7s1rkmr2sh8q92cgr1c534fvpbh3h0bc3fvvf8g"; depends=[]; }; yarrr = derive2 { name="yarrr"; version="0.1.5"; sha256="1258bj7x4icaxfabnnd3fgwydnqbzxkih7zw0sdlwdax3q8fw5c5"; depends=[BayesFactor circlize jpeg]; }; yasp = derive2 { name="yasp"; version="0.2.0"; sha256="0fza8h9y1wmarsmjcvw4r970d6j4ii795pd2h4xh9nlsirv50adi"; depends=[]; }; - yatah = derive2 { name="yatah"; version="0.2.1"; sha256="0cckmslzm19kg7vkv28aq8h4yx8m2khqs9d6y98gwl64qrjiz42g"; depends=[ape purrr stringr]; }; - ycevo = derive2 { name="ycevo"; version="0.1.2"; sha256="1s61rdsll7b9dyc1lamyp4mlsw7vyf9lshw2dg3x5i3xf5rmrrsd"; depends=[dplyr magrittr Matrix Rcpp RcppArmadillo rlang]; }; + yatah = derive2 { name="yatah"; version="1.0.0"; sha256="0q0c9rgkjcj4i7jjc6a9znlvk7b4vawa84g9d1i4v6m5z7nrfdzd"; depends=[ape lifecycle purrr stringr]; }; + ycevo = derive2 { name="ycevo"; version="0.2.1"; sha256="0gih1dq62k7163pjsjl32smdqy54wjhsp31mv7ddhp4xmr6qb7cw"; depends=[dplyr future_apply generics ggplot2 lubridate Matrix progressr Rcpp RcppArmadillo rlang tibble tidyr tidyselect]; }; yesno = derive2 { name="yesno"; version="0.1.2"; sha256="1n9v8m1wkk9p2ahl7d1khbffxmshv68q1v44v04y4v1k6qjvm0i2"; depends=[]; }; yfR = derive2 { name="yfR"; version="1.1.0"; sha256="1jdqz0cb13fgvrak1sgs4h2cwgr8rcbg68c35mlaqnmkfn2w3xvc"; depends=[cli dplyr furrr future glue httr humanize jsonlite lubridate magrittr pingr purrr quantmod readr rvest stringr tibble tidyr tidyselect zoo]; }; yhat = derive2 { name="yhat"; version="2.0-4"; sha256="0hzf6fns37jv67ssa6zwivpj2nlaykfjmj5y21dyh739i3102jnv"; depends=[boot miscTools plotrix yacca]; }; @@ -20556,7 +20865,8 @@ in with self; { yll = derive2 { name="yll"; version="1.0.0"; sha256="0lf3cd6pfzki29nk2iy0vd6v4dw6zlsbrjh2839zq5vlpiimsvck"; depends=[]; }; ymd = derive2 { name="ymd"; version="0.1.0"; sha256="18ivf09r7df4jq60pm0gdagcvpb4pz9a19y7dfb096h1yk7rqfa4"; depends=[]; }; ymlthis = derive2 { name="ymlthis"; version="0.1.7"; sha256="127rh8mfff0ii6wcd7iaaz60vlkynjlrs188wwcap8l2qgv67idy"; depends=[crayon fs glue magrittr purrr rlang rmarkdown rstudioapi stringr usethis whoami withr yaml]; }; - ympes = derive2 { name="ympes"; version="1.0.0"; sha256="1pksi1927n6y9m27mh3nyrzf9z01i0ws117h2i2nbm4n6srm3fmi"; depends=[]; }; + ympes = derive2 { name="ympes"; version="1.3.0"; sha256="12bs2b4gb4767sbkpvykspm5ip62y88bk3rxbmn6l23i3k2j1fl4"; depends=[]; }; + yodel = derive2 { name="yodel"; version="1.0.0"; sha256="04glh59dcwahprxcw9a1wanbcxrmbfmkndw3w1idynwbmyarj4wf"; depends=[dplyr purrr rlang]; }; yorkr = derive2 { name="yorkr"; version="0.0.42"; sha256="0czi3ylqlzpd2h8g5500hrk0ql4b3qlcgmlcmcfa44s1w8fgny33"; depends=[dplyr ggplot2 gridExtra reshape2 rpart_plot yaml]; }; youngSwimmers = derive2 { name="youngSwimmers"; version="0.0.1"; sha256="02ih66ad8v5qkgyszllkh9319sfd6fqcci4zrvbjr1dfwlwa2ri1"; depends=[data_table lifecycle]; }; ypr = derive2 { name="ypr"; version="0.6.0"; sha256="0hn4zbg270p8yg4wxcszwfc0vsf2mb21lkqi1745000rh5cbz8sa"; depends=[chk ggplot2 lifecycle purrr tibble tidyplus yesno]; }; @@ -20565,19 +20875,21 @@ in with self; { yuimaGUI = derive2 { name="yuimaGUI"; version="1.3.1"; sha256="1sl45kmqqq7hg3lkpn3cy70f409fwsgg76gjldx1l4cvmyzyf9hl"; depends=[DT ggplot2 ghyp plotly quantmod sde shiny shinyBS shinydashboard shinyjs yuima]; }; yulab_utils = derive2 { name="yulab.utils"; version="0.1.4"; sha256="0m1iip6w711z92y6qw0rc0flxl9bzj85vrhm2q2rqjz9pyqf3m1j"; depends=[cli digest fs memoise rlang]; }; yum = derive2 { name="yum"; version="0.1.0"; sha256="1k9q34n1pzv4c7hp7cd4yhm8v1qv41an8vfh65n4byvyzipxp85y"; depends=[yaml]; }; - yyjsonr = derive2 { name="yyjsonr"; version="0.1.18"; sha256="0z31rw7ls1qnfk4ww7l87jc1blgba229r1yd6i70mn80p7k7yy30"; depends=[]; }; + yyjsonr = derive2 { name="yyjsonr"; version="0.1.20"; sha256="0gkvls7rd1rbklg9f548rhpmqpa0kb0s1xgf7mhvlhxk45x32ipd"; depends=[]; }; zCompositions = derive2 { name="zCompositions"; version="1.5.0-3"; sha256="1gbwx3vgx5viqnn5jsszild6ikyc2pmf1hdjc9475caf9xx9l589"; depends=[MASS NADA truncnorm]; }; zTree = derive2 { name="zTree"; version="1.0.7"; sha256="005zk6wpchpss6865ki35yawgf668pn70163ah97rnfkhfaswm6y"; depends=[plyr]; }; zalpha = derive2 { name="zalpha"; version="0.3.0"; sha256="04hi5lxgcqzmkbqppp5fv8x7wdgap3bgr8b8pv4pvavzh73jlmxs"; depends=[]; }; zctaCrosswalk = derive2 { name="zctaCrosswalk"; version="2.0.0"; sha256="14yda45nqn9ywb7zpwp4kmjziglj0qjgm02lmi8ndvc5wi2r1ma7"; depends=[dplyr readr rlang stringr]; }; - zcurve = derive2 { name="zcurve"; version="2.4.0"; sha256="0cc5prmslj9nffs0bl7xg6fdy7qc1qc12p6kpzfi23w3x1m62dx1"; depends=[evmix ggplot2 nleqslv Rcpp Rdpack rlang]; }; - zdeskR = derive2 { name="zdeskR"; version="0.4.0"; sha256="15kb85xmn133yby4p03afkib3wrv5baswsdalj8sigyv452id7k6"; depends=[dplyr httr jsonlite magrittr plyr purrr tidyr tidyselect]; }; + zcurve = derive2 { name="zcurve"; version="2.4.2"; sha256="0a9x0j04mfjn2vfycylvqmsh7v4b1a5lx5j501xbzqp9m3m9bh9q"; depends=[evmix ggplot2 nleqslv Rcpp Rdpack rlang]; }; + zdeskR = derive2 { name="zdeskR"; version="0.4.1"; sha256="11nk8rvsqipqh9w13hi31yy3yv6hd2dk1si61p3frr9g5lsbi5l0"; depends=[dplyr httr jsonlite magrittr plyr purrr tidyr tidyselect]; }; zeallot = derive2 { name="zeallot"; version="0.1.0"; sha256="1sd1igcfnv27pa3bqxlbyxchi562h7grnjg1l7wxx3bwr49i57s3"; depends=[]; }; zebu = derive2 { name="zebu"; version="0.2.2.0"; sha256="1bxzc110nxyssdvnk330qs8qbmf6m7v5gglcfdkxdzy5gcbs1bm6"; depends=[data_table ggplot2 Rcpp reshape2]; }; zeitgebr = derive2 { name="zeitgebr"; version="0.3.5"; sha256="1h2zx3ah1xdyyag40ragrv7gvpnlzqmappbnjp971dn9khqdxfqs"; depends=[behavr data_table lomb pracma WaveletComp]; }; - zen4R = derive2 { name="zen4R"; version="0.9"; sha256="09r3kd5mvaps30k4vszbfbhfb8hp6jq4f1v3kr9b8wgv7vqsa2k4"; depends=[atom4R httr jsonlite keyring R6 utf8 XML xml2]; }; + zen4R = derive2 { name="zen4R"; version="0.10"; sha256="0sizxy7ck26jrq77y09qcqyzppamfm0kh2zw8s7n83z0bfy54vs6"; depends=[atom4R cli httr jsonlite keyring plyr R6 utf8 XML xml2]; }; zendeskR = derive2 { name="zendeskR"; version="0.4"; sha256="06cjwk08w3x6dx717123psinid5bx6c563jnfn890373jw6xnfrk"; depends=[RCurl rjson]; }; + zendown = derive2 { name="zendown"; version="0.1.0"; sha256="0xmz4m9c96dm79csxwh878vvjyq147fzcy833i6a5flc5z9asw3z"; depends=[checkmate cli curl fs glue httr2 RCurl tibble tidyr]; }; zenplots = derive2 { name="zenplots"; version="1.0.6"; sha256="0rf690qip2x7w037cbq51cfzqmla398a6x857wpz8cy9fd26ns7p"; depends=[graph MASS PairViz]; }; + zenstats = derive2 { name="zenstats"; version="0.1.2"; sha256="1ji4pqb0vh8ad8jr4pd6dkjr5cfckrlp24jncjc079wahw64fgs5"; depends=[checkmate cli curl polite purrr RCurl readr rlang rvest tibble]; }; zeroEQpart = derive2 { name="zeroEQpart"; version="0.1.0"; sha256="1n24nqyl0irpyspwx4b73xy228a84aa8zsn9fcf2lrlni5vyzmm0"; depends=[MASS ppcor]; }; zerotradeflow = derive2 { name="zerotradeflow"; version="0.1.0"; sha256="03fvhk3yd6grqs0d6m3j537xzy0n9s64947g7gagaqbrm3n8j1m6"; depends=[cli dplyr magrittr purrr rlang tidyr tidyverse]; }; zetadiv = derive2 { name="zetadiv"; version="1.2.1"; sha256="0m147z864g2pca28gbna1bb7jqr2f74x15fj8v8hhs3a2lr8lh37"; depends=[car geodist glm2 mgcv nnls scam vegan]; }; @@ -20620,6 +20932,7 @@ in with self; { AGSDest = derive2 { name="AGSDest"; version="2.3.4"; sha256="140bqzgaagdyzgxsn998jw2sxak448i47xyacn2psfnps440gfjr"; depends=[ldbounds]; broken = true; }; AGread = derive2 { name="AGread"; version="1.3.2"; sha256="1l7h6hpf28hpff50s7qaj9cwiqki98wiz2a7z773d7qzm28074gy"; depends=[anytime data_table DBI DescTools dplyr lubridate magrittr PAutilities R_utils Rcpp read_gt3x readr reshape2 rlang RSQLite stringr]; broken = true; }; AIG = derive2 { name="AIG"; version="0.1.9"; sha256="1jnnfmcwxcv4fsdcz7jb2lgczxdwrq3qxg2bhsh1610iwz4gzii7"; depends=[dplyr magrittr mgcv rgl]; broken = true; }; + ALSM = derive2 { name="ALSM"; version="0.2.0"; sha256="1g7zk8q462j4faq5wzzghkjc003ny6rj8hrymsgvh3fg3a72lvy3"; depends=[car leaps SuppDists]; broken = true; }; AMAP_Seq = derive2 { name="AMAP.Seq"; version="1.0"; sha256="0z0rrzps6rm58k4m1ybg77s3w05m5zfya4x8ril78ksxsjwi3636"; depends=[]; broken = true; }; AMGET = derive2 { name="AMGET"; version="1.0"; sha256="18wdzzg5wr7akbd1iasa4mvmy44fb2n5gpghwcrx80knnicy3dxq"; depends=[]; broken = true; }; AMOEBA = derive2 { name="AMOEBA"; version="1.1"; sha256="1npzh3rpfnxd4r1pj1hm214sfgbw4wmq4ws093lnl7pvsl0q37xn"; depends=[rlecuyer snowfall spdep]; broken = true; }; @@ -20641,12 +20954,11 @@ in with self; { AWAPer = derive2 { name="AWAPer"; version="0.1.46"; sha256="02n662wvd8qwshfmj9qfff730qs6ls82hkdsphw05jj6llddi4k5"; depends=[chron Evapotranspiration maptools ncdf4 raster sp xts zoo]; broken = true; }; AWR_Athena = derive2 { name="AWR.Athena"; version="2.0.7-0"; sha256="1j9bqhyk0jzry4g379ml65gwxlszn7pjif1dywgns98jbry8mavh"; depends=[rJava RJDBC]; broken = true; }; AWR_KMS = derive2 { name="AWR.KMS"; version="0.1"; sha256="00aqhyqlncsv0vfcyhaazxaclwm63v5kscssash7529avdwd4gqg"; depends=[AWR jsonlite rJava]; broken = true; }; - AZIAD = derive2 { name="AZIAD"; version="0.0.2"; sha256="0w5s367zkf857hzs1lczjgnd8ydnam8k5fwf155drxxdr5c3gm2z"; depends=[corpcor doParallel dplyr EnvStats extraDistr foreach lqmm matrixcalc MixAll QRM rmutil rootSolve]; broken = true; }; - AccelStab = derive2 { name="AccelStab"; version="1.0.0"; sha256="0bjbxnbi809hf57inf09y0635917spw1l0mmpjx89ncrvngvzkxx"; depends=[dplyr ggplot2 minpack_lm mvtnorm]; broken = true; }; ActiSleep = derive2 { name="ActiSleep"; version="0.2.1"; sha256="0nkfddfv0g1bvsg6811lrmy0cx7knmi225snyp22bh9ly9fnlqp8"; depends=[accelerometry DBI dplyr lazyeval lubridate RSQLite stringr tibble]; broken = true; }; ActiveDriverWGS = derive2 { name="ActiveDriverWGS"; version="1.2.0"; sha256="0xnplgwxd197a4d422bsxg753q158i12ils16awd1cw30wafdxkk"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges S4Vectors]; broken = true; }; AdapEnetClass = derive2 { name="AdapEnetClass"; version="1.2"; sha256="01k3mj4g1ckbng7wkzzn9h0k9yf01cpnnkly0sjda574c5jhj0rc"; depends=[glmnet imputeYn lars quadprog]; broken = true; }; AdaptFitOS = derive2 { name="AdaptFitOS"; version="0.69"; sha256="0mclsnsxjyg1q7p7654gjsczzdzpa6avx3b9jpmdb0n63zdgmwy3"; depends=[MASS mgcv nlme SemiPar]; broken = true; }; + AdaptiveSparsity = derive2 { name="AdaptiveSparsity"; version="1.6"; sha256="0imr5m8mll9j6n4icsv6z9rl5kbnwsp9wvzrg7n90nnmcxq2cz91"; depends=[MASS Matrix Rcpp RcppArmadillo]; broken = true; }; AdjBQR = derive2 { name="AdjBQR"; version="1.0"; sha256="14437pyz9v09ighwqvy1lcw0vfp2gaqzs9nzrb1gkfbb8ndzjw7k"; depends=[coda MHadaptive quantreg survival]; broken = true; }; AirSensor = derive2 { name="AirSensor"; version="1.0.8"; sha256="0wpfg3mry1vdyd9v1981hasizj1mn5wy60ig9swxlqdm7j11wxan"; depends=[countrycode cowplot dplyr dygraphs geodist geosphere GGally ggmap ggplot2 gridExtra httpcode httr jsonlite leaflet lubridate magrittr MazamaCoreUtils MazamaLocationUtils MazamaSpatialUtils openair PWFSLSmoke RColorBrewer readr rlang scales seismicRoll sp stringr tibble tidyr tidyselect worldmet xts zoo]; broken = true; }; AllPossibleSpellings = derive2 { name="AllPossibleSpellings"; version="1.1"; sha256="0ksfm2pfjka3yjgcd257v7sns1niaylsfxvhhh2jwdi016cpdw10"; depends=[]; broken = true; }; @@ -20659,6 +20971,7 @@ in with self; { AnnotLists = derive2 { name="AnnotLists"; version="1.2"; sha256="1g2khb2ggniwg2zcjamsm3bxyrl2zabvk540b5vyy9am9k83m1g9"; depends=[]; broken = true; }; AntWeb = derive2 { name="AntWeb"; version="0.7"; sha256="1ykfg3zzjdvjppr2l4f26lx00cn5vaqhhz1j1b5yh113ggyl40qw"; depends=[assertthat httr leafletR plyr rjson]; broken = true; }; AquaBPsim = derive2 { name="AquaBPsim"; version="0.0.1"; sha256="0bf83kp8j7il5q9kr8r0pxlnsf6l9nvhgkny4y5wgc8pbki0dsmz"; depends=[MASS matlib pedigree readxl]; broken = true; }; + ArchaeoChron = derive2 { name="ArchaeoChron"; version="0.1"; sha256="1qma2432mm73h72g9ah1k02wlcb6yrhc6mpai9nj7v58s126ffxn"; depends=[ArchaeoPhases Bchron coda rjags]; broken = true; }; AssotesteR = derive2 { name="AssotesteR"; version="0.1-10"; sha256="0aysilg79vprcyjirqz6c5s1ry1ia92xik3l38qrw1gf3vfli9cw"; depends=[mvtnorm]; broken = true; }; AtmRay = derive2 { name="AtmRay"; version="1.31"; sha256="162078jd032i72sgaar9hqcnn1lh60ajcqpsz4l5ysxfkghcxlh8"; depends=[]; broken = true; }; AugmenterR = derive2 { name="AugmenterR"; version="0.1.0"; sha256="0hi501p8ksaqzc9dq16dbmkz50kakgw3k0awdkbpci5can2sqvfl"; depends=[]; broken = true; }; @@ -20673,9 +20986,11 @@ in with self; { BBRecapture = derive2 { name="BBRecapture"; version="0.2"; sha256="1w0m8p4mwjsycv9krmsgdyjckic2nwxbyhrz1s2gng2v1h20zvlf"; depends=[HI lme4 locfit secr]; broken = true; }; BBcor = derive2 { name="BBcor"; version="1.0.3"; sha256="160d34an9837i9myw9m0yxplh1z2cmhx2wc7m59dlld5zap4glag"; depends=[bayeslincom ggplot2 pbapply psych Rdpack wdm]; broken = true; }; BCA = derive2 { name="BCA"; version="0.9-3"; sha256="0ksd6b0ykydgdn33x29bwwqkrp23cvdj3imps0l6qs1p4465j5nf"; depends=[car clv flexclust Rcmdr RcmdrMisc rpart]; broken = true; }; + BCE = derive2 { name="BCE"; version="2.2.0"; sha256="13banjjk14rrmyd66iayywip9aznfsk8x3yk4pamlw87byf0z3vk"; depends=[FME limSolve Matrix]; broken = true; }; BCellMA = derive2 { name="BCellMA"; version="0.3.4"; sha256="1njprs7ksv0w18ffs0agz0290aa2akw48225iaa3bjhbl08dpidl"; depends=[ggplot2 reshape2]; broken = true; }; BEST = derive2 { name="BEST"; version="0.5.4"; sha256="109zl99bz1bndan1pm3hm0f1da86a18lcyzl0741z14l0m0d91a9"; depends=[coda HDInterval rjags]; broken = true; }; BGSIMD = derive2 { name="BGSIMD"; version="1.0"; sha256="0xkr56z8l72wps7faqi5pna1nzalc3qj09jvd3v9zy8s7zf5r7w4"; depends=[]; broken = true; }; + BHTSpack = derive2 { name="BHTSpack"; version="0.6"; sha256="01y3ly83i70lkg2kgbw1r7r1g4k9rk41qyzzscbp8zgc9z63ll8z"; depends=[R2HTML xtable]; broken = true; }; BIDistances = derive2 { name="BIDistances"; version="0.0.2"; sha256="1ajwa7ib0m3krhizi905rzkdqm9fhcypm58yqn4c6hnq4kpc9fm1"; depends=[parallelDist]; broken = true; }; BIOM_utils = derive2 { name="BIOM.utils"; version="0.9"; sha256="0xckhdvf15a62awfk9rjyqbi6rm7p4awxz7vg2m7bqiqzdll80p7"; depends=[]; broken = true; }; BIS = derive2 { name="BIS"; version="0.3.1"; sha256="1nmbcdk4p34grss2bwwqw5zynp5c2xfhhqs9h9s85nhdm7ark78v"; depends=[dplyr readr rvest tidyr tidyselect xml2]; broken = true; }; @@ -20715,14 +21030,17 @@ in with self; { BigDataStatMeth = derive2 { name="BigDataStatMeth"; version="0.99.32"; sha256="0iz6pzlhkziwdwv80sy9zcxfvkxxjhqmgn7lk7lv1mkhywqkd9jk"; depends=[beachmat BH data_table Rcpp RcppEigen RcppParallel RCurl rhdf5 Rhdf5lib RSpectra]; broken = true; }; BigTSP = derive2 { name="BigTSP"; version="1.0"; sha256="1jdpa8rcnrhzn0hilb422pdxprdljrzpgr4f26668c1vv0kd6k4v"; depends=[gbm glmnet randomForest tree]; broken = true; }; BinQuasi = derive2 { name="BinQuasi"; version="0.1-6"; sha256="0jf7zf3yqr2kgcm6h35234x2dqf65d2dzsh63b4q8m5l36r77k59"; depends=[BiocGenerics csaw edgeR GenomicAlignments GenomicRanges IRanges mgcv pracma quadprog RMySQL Rsamtools S4Vectors SummarizedExperiment]; broken = true; }; - BinaryEPPM = derive2 { name="BinaryEPPM"; version="2.3"; sha256="0fydh3pp7y0glk2rhihcslzx10hgn5la922jbnqzg2nplvzv7ybj"; depends=[expm Formula lmtest numDeriv]; broken = true; }; BioFTF = derive2 { name="BioFTF"; version="1.2-0"; sha256="03r6fhpc4dqrcnbl73j9kav1l7rblgfldpbkl2p367vv20xggqih"; depends=[]; broken = true; }; BioMedR = derive2 { name="BioMedR"; version="1.2.1"; sha256="0l3nmnqv0gzkbby4fhajbba910zpnbyckvxwds353pn54g9pcry7"; depends=[Biostrings ChemmineR fmcsR GOSemSim MASS org_Hs_eg_db pls randomForest rcdk RCurl rjson]; broken = true; }; + Biocomb = derive2 { name="Biocomb"; version="0.4"; sha256="0jqfac81r5731m0i9jq7v5ns9263p8r7i03jyz10y915kfr6ikh6"; depends=[arules class e1071 FSelector gtools MASS nnet pamr pROC randomForest Rcpp rgl ROCR rpart RWeka]; broken = true; }; Biolinv = derive2 { name="Biolinv"; version="0.1-3"; sha256="1c081rhbgl6n76p2knaiyvjx0l02slix92vgfl2spss5cb9qzkln"; depends=[classInt fields raster sp spatstat spatstat_core spatstat_geom]; broken = true; }; Biopeak = derive2 { name="Biopeak"; version="1.0"; sha256="1l08m1jl8yygbdfzk8klpj1q2m7icvxi98vmk7akxs0sswjc6wd2"; depends=[cluster dbscan factoextra gplots RColorBrewer]; broken = true; }; + Bios2cor = derive2 { name="Bios2cor"; version="2.2.1"; sha256="0xj7ab9a463p4a67y0hlv6mfd08xf8didkn2mwrfa7gxjqqvix4z"; depends=[bigmemory bio3d circular igraph]; broken = true; }; BiplotML = derive2 { name="BiplotML"; version="1.1.0"; sha256="1wrn3bz3lwh05fs97m4zq12xy7vgkwb9kn4xvx5kfiipps1kqw8s"; depends=[optimr optimx shapes]; broken = true; }; BivarP = derive2 { name="BivarP"; version="1.0"; sha256="08f7sphylaj3kximy1avaf29hxj2n800adsnssh01p9bcxnzb2i4"; depends=[copula dfoptim survival]; broken = true; }; + BlackCarbon = derive2 { name="BlackCarbon"; version="0.1.0"; sha256="19ll2lcdxj5bmgh4wyk47ddxpwrqdiy67wsvj7mi1vm7y5ccyfhn"; depends=[]; broken = true; }; BlanketStatsments = derive2 { name="BlanketStatsments"; version="0.1.2"; sha256="00zh3ivqrzlz6wz0nalmdqp8pfki3kkxm9idh2ri6sfxsb6kfdp6"; depends=[assertive_types basecamb DescTools Hmisc survAUC survival]; broken = true; }; + Blaunet = derive2 { name="Blaunet"; version="2.2.1"; sha256="070vqkd24ydzs277acpwcqay8nrp3ip1wf2zkdkg1qc2crip86hs"; depends=[digest ergm foreign gWidgets2 gWidgets2tcltk haven network plot3D plot3Drgl rgl sna statnet_common]; broken = true; }; BlockFeST = derive2 { name="BlockFeST"; version="2.0"; sha256="1fcl3yc1cf09znqbj787d3fd2kl5rp63la7pxawsgmap7nxwkp65"; depends=[BASIX]; broken = true; }; BlockMessage = derive2 { name="BlockMessage"; version="1.0"; sha256="1jrcb9j1ikbpw098gqbcj29yhffa15xav90y6vpginmhbfpwlbf4"; depends=[]; broken = true; }; Bmix = derive2 { name="Bmix"; version="0.6"; sha256="17swhn2p7jv29fkspacg2v181lkc9yd3xww2fx31xs8hsndcm857"; depends=[mvtnorm]; broken = true; }; @@ -20759,8 +21077,10 @@ in with self; { CRAC = derive2 { name="CRAC"; version="1.0"; sha256="0vnqmmmwakx5jnzqp20dng35p7rvmz3ypm2m7bs41m8nhh2wq1xa"; depends=[]; broken = true; }; CSCDRNA = derive2 { name="CSCDRNA"; version="1.0.3"; sha256="0ym6bzk8n9kf0pvd3h4dv2hhxmmrr54hvs7vccmxrhxikr8ix5iy"; depends=[Biobase BisqueRNA limSolve MAST nlshrink plyr Seurat]; broken = true; }; CSFA = derive2 { name="CSFA"; version="1.2.0"; sha256="1nkyhk8qhrrlx8v26yw86l954m4xfcxma4pqbhgw95jvqql5h3li"; depends=[elasticnet fabia FactoMineR pls randomcoloR snowFT]; broken = true; }; + CSTE = derive2 { name="CSTE"; version="2.0.0"; sha256="0r38pvd83aw9zrq43malw50vlbnknh3b53x3ydj0wxrk95wsmy46"; depends=[dfoptim fda locpol Rcpp survival]; broken = true; }; CSUV = derive2 { name="CSUV"; version="0.1.1"; sha256="1gh8gxwnrg4j017c08xfhm57rwci24sqmxxx00k3d0mw6j0mbdvw"; depends=[caret doParallel DT futile_logger ggplot2 glmnet HDCI MASS ncvreg relaxo reshape2 shiny shinyjs]; broken = true; }; CTP = derive2 { name="CTP"; version="3.0.1"; sha256="02f423y7yx0hchzghfdbrrljsfq3af1wcbvk8z1q5wyzq99xcag5"; depends=[clinfun diagram dplyr emmeans Gmisc magrittr MASS shape survival]; broken = true; }; + CVEK = derive2 { name="CVEK"; version="0.1-2"; sha256="03z4s0szi8rl3izc651rvrhl2z247aaflyphzizplgmpw81xv1ry"; depends=[limSolve MASS]; broken = true; }; CVTuningCov = derive2 { name="CVTuningCov"; version="1.0"; sha256="1bwzis82lqwcqp2djy4bnd3vvjr47krlv3pdc5msh12wcs0xhs7n"; depends=[]; broken = true; }; CVarE = derive2 { name="CVarE"; version="1.1"; sha256="132bsqvdhalifn47xka23ikas1axxkg4jw8yja6ba8dflb8r753i"; depends=[mda]; broken = true; }; CVcalibration = derive2 { name="CVcalibration"; version="1.0-1"; sha256="0ca582fnysrldlzxc3pihsph9pvdgygdh7sfzgxvr5fc3z1jbjzb"; depends=[]; broken = true; }; @@ -20770,12 +21090,13 @@ in with self; { CensRegMod = derive2 { name="CensRegMod"; version="1.0"; sha256="0qqwkxn8knhcjb6mph7mp7mma56zxslbvkfgfajq2lq4gbg901y4"; depends=[]; broken = true; }; CepLDA = derive2 { name="CepLDA"; version="1.0.0"; sha256="15vhk7l5mw2kicw2x60r4z71hc415g8kaf2p06jgf7ykxmzkj7kg"; depends=[astsa class MASS multitaper]; broken = true; }; CfEstimateQuantiles = derive2 { name="CfEstimateQuantiles"; version="1.0"; sha256="1qf85pnl81r0ym1mmsrhbshwi4h1iv19a2wjnghbylpjaslgxp6i"; depends=[]; broken = true; }; + ChIPtest = derive2 { name="ChIPtest"; version="1.0"; sha256="1yn5b5s56k2dbhw6damxj18xbaiz180ym7fiq2i3p2gkcgwpddbz"; depends=[]; broken = true; }; + ChangePointTaylor = derive2 { name="ChangePointTaylor"; version="0.2"; sha256="0rf3h7l8l6fw2i489ldcqhsf9ppjzpx298p5ciyp9iyc0zcykz38"; depends=[bench dplyr ggplot2 magrittr purrr Rcpp rlang tidyr]; broken = true; }; ChargeTransport = derive2 { name="ChargeTransport"; version="1.0.2"; sha256="0mq06ckp3yyj5g1z2sla79fiqdk2nlbclm618frhqcgmq93h0vha"; depends=[]; broken = true; }; CityPlot = derive2 { name="CityPlot"; version="2.0"; sha256="0lskgxmagqjglvpq39hgbygkf4qp28i2bj6b4m2av1s3pzb4465g"; depends=[]; broken = true; }; CityWaterBalance = derive2 { name="CityWaterBalance"; version="0.1.0"; sha256="0nvm6bv2cxszjf33xgn1xcvhrgrgbdcar0jahwf7bs03gdlpmgi1"; depends=[dataRetrieval dplyr EcoHydRology geoknife lubridate reshape2 tgp xts zoo]; broken = true; }; ClimDown = derive2 { name="ClimDown"; version="1.0.8"; sha256="0qcag9jwvhi9yss55wy5jxabrvym9hljn1fs5gfkzjs5hiwv3gxv"; depends=[abind fields foreach ncdf4 PCICt seas udunits2]; broken = true; }; ClustMMDD = derive2 { name="ClustMMDD"; version="1.0.4"; sha256="0sblf3crpai53dflhyi27yn6mg0xyy9dxhwsk8j57sq5vr50x686"; depends=[Rcpp]; broken = true; }; - CodeDepends = derive2 { name="CodeDepends"; version="0.6.5"; sha256="0l7kiv3awx50glf5cs841b4zzsff1ml90f0zr868ygvwsr4ps1hq"; depends=[codetools graph XML]; broken = true; }; CoinMinD = derive2 { name="CoinMinD"; version="1.1"; sha256="0invnbj5589wbs0k2w5aq9qak7axc3s0g9nw85c48lnl0v95s91i"; depends=[MCMCpack]; broken = true; }; ColorPalette = derive2 { name="ColorPalette"; version="1.0-1"; sha256="1dsj5njikx3qm2lnamqqg4qgwwyr11fwx9s5sdi7dkfx3nmf6dac"; depends=[]; broken = true; }; CombMSC = derive2 { name="CombMSC"; version="1.4.2.1"; sha256="1jxf59hs1px271im2dwc1653y9pfp79gwmacafcva224bvh5vi49"; depends=[]; broken = true; }; @@ -20792,6 +21113,7 @@ in with self; { CondReg = derive2 { name="CondReg"; version="0.20"; sha256="1ffnrjfjcb66i9nyvidkcn4k9pcj4r7xanjwzcxcrj2qm39apkqx"; depends=[]; broken = true; }; ConfoundedMeta = derive2 { name="ConfoundedMeta"; version="1.3.0"; sha256="17l6dfff2v0a4p022qclrmkzi78ga9adkgxgrgk9imz0n9m9424d"; depends=[ggplot2 metafor]; broken = true; }; ConjointChecks = derive2 { name="ConjointChecks"; version="0.0.9"; sha256="097mhiz8zjmmkiiapr3zfx7v35xirg57nqp1swd72dixaa23nhr1"; depends=[]; broken = true; }; + CopulaDTA = derive2 { name="CopulaDTA"; version="1.0.1"; sha256="1a9v398yn7gflpnsrgzap8gy1b676ri1m3fwiv1jpc5l1cw154pm"; depends=[ggplot2 plyr reshape2 rstan]; broken = true; }; CopyDetect = derive2 { name="CopyDetect"; version="1.3"; sha256="1g3bwd805h62x93xvvn67acf9v6vn7s7ghxpvjhwcfdfj7fwzh6l"; depends=[mirt]; broken = true; }; CorDiff = derive2 { name="CorDiff"; version="1.0"; sha256="12rgfhygrdq1ign4ybr8g171wxic8zbp83n1xdsnqpj910k5jdr5"; depends=[mcc]; broken = true; }; CorporaCoCo = derive2 { name="CorporaCoCo"; version="2.0"; sha256="1ly9na1lyjwzm23ip8cnpkrdabsvn0db11i4mhyvxpq4r38zvhnn"; depends=[data_table RColorBrewer rlist stringi]; broken = true; }; @@ -20801,13 +21123,12 @@ in with self; { CoxPhLb = derive2 { name="CoxPhLb"; version="1.2.0"; sha256="0jlh2k5ygj896sfx7dcw5qlb80bl64rsvqfayv0c6a107bmrzsw4"; depends=[survival]; broken = true; }; Cprob = derive2 { name="Cprob"; version="1.4.1"; sha256="1m4ys8xpj1jbn3lf8fym935y94dxipiimsf9zxwyw5sy71y7skgq"; depends=[geepack lattice lgtdl prodlim tpr]; broken = true; }; CreditMetrics = derive2 { name="CreditMetrics"; version="0.0-2"; sha256="16g3xw8r6axqwqv2f0bbqmwicgyx7nwzff59dz967iqna1wh3spi"; depends=[]; broken = true; }; - CreditRisk = derive2 { name="CreditRisk"; version="0.1.3"; sha256="09ks8xlsrbp3an1drcwmmd6df4fsfz61z21ma2p62a1pk0bnc86c"; depends=[fOptions]; broken = true; }; CropDetectR = derive2 { name="CropDetectR"; version="0.0.1"; sha256="14sabqld94if7f2m39bh6652cb62hcwx53k8q5k23anzzsn93qlj"; depends=[dplyr EBImage imager reshape2]; broken = true; }; CrypticIBDcheck = derive2 { name="CrypticIBDcheck"; version="0.3-3"; sha256="1c7n020i9lxp0fam05k9v4az4rvx8fakhzi9fkma82smpl709x8q"; depends=[car chopsticks ellipse rJPSGCS]; broken = true; }; CytobankAPIstats = derive2 { name="CytobankAPIstats"; version="2.0"; sha256="0xczcgaxd8dv6fd1j5c8y4il852lq8859d1y16sxs8a3gqn9fbz2"; depends=[CytobankAPI pheatmap shiny shinyFiles xlsx]; broken = true; }; CytobankBridgeR = derive2 { name="CytobankBridgeR"; version="1.0.0"; sha256="0m8gxbm3p9gvdszymqx10n5rzb406r4f70a0in798c56mp2rcsl4"; depends=[CytobankAPI]; broken = true; }; - D3GB = derive2 { name="D3GB"; version="1.1"; sha256="1r4hxx2qdws7c7hsnswzfh6az8mn720sk8nygilljl2ghnwpq7pa"; depends=[DBI RSQLite]; broken = true; }; DAMisc = derive2 { name="DAMisc"; version="1.7.2"; sha256="1mg40fqb0bj8jlw50dkkby67rj83g6pjhw9vbqvfxq30a1pq9inm"; depends=[AICcmodavg boot car clarkeTest coda dplyr DT effects ggplot2 haven janitor jtools lattice latticeExtra magrittr MASS nnet optiscale rlang srvyr survey tibble tidyr tidyselect xtable]; broken = true; }; + DAP = derive2 { name="DAP"; version="1.0"; sha256="0zzb05yxfaqp6qnr979q20rqy8sl5l825mxs0x9366qr7mz5k5ws"; depends=[MASS]; broken = true; }; DBERlibR = derive2 { name="DBERlibR"; version="0.1.3"; sha256="19hqp0q7j6b7h9bamn3v2d1kdwzi0mlqvx7b618fkixpibqndzn7"; depends=[car dplyr emmeans ggplot2 ggpubr ggrepel psych readr reshape rstatix tibble]; broken = true; }; DBGSA = derive2 { name="DBGSA"; version="1.2"; sha256="04zqh9y3nqcdzs5jn8aaq5idy9zl450ikvl788xs860wlg692qv2"; depends=[fdrtool]; broken = true; }; DBIsqldf = derive2 { name="DBIsqldf"; version="0.9.9-2"; sha256="1yp9xqrf6dbq9478w0bd55rzhqf78anwrqzlkphbl7fk2d2ipy6i"; depends=[DBI]; broken = true; }; @@ -20817,8 +21138,11 @@ in with self; { DEEPR = derive2 { name="DEEPR"; version="0.1"; sha256="0q8970q3gpjxwxdf2bkhpnqrxpm00w27b20a9sn9vv314rn1n7s8"; depends=[dirmult]; broken = true; }; DESnowball = derive2 { name="DESnowball"; version="1.0"; sha256="012kdnxmzap6afc3ffkcvk1mazlkp286av6g9fwz2wcbf5mh9n1m"; depends=[clue cluster combinat MASS]; broken = true; }; DET = derive2 { name="DET"; version="3.0.1"; sha256="0r2q1r4wc4nhhrr9bllxsp2w6ajja61mh34dyijjsfchx4025ljb"; depends=[doParallel pROC]; broken = true; }; + DGCA = derive2 { name="DGCA"; version="1.0.3"; sha256="15n6nlnb20xzn4swcclyarfq7pq7rwmm2n0rv7m2q9jkxr9vp4w0"; depends=[matrixStats WGCNA]; broken = true; }; DLSSM = derive2 { name="DLSSM"; version="0.1.0"; sha256="0ca9z48kfzximk6b49mqcfw50av9zh3jf9frjjsc8xwyyc6fq381"; depends=[Matrix]; broken = true; }; + DMLLZU = derive2 { name="DMLLZU"; version="0.1.1"; sha256="0ck87abcd5gkq69q1g5g0yshfhx94m3vgayvxgzgnkidn9mivx22"; depends=[caret gbm ISLR lmtest nnet randomForest rlang sandwich]; broken = true; }; DMRMark = derive2 { name="DMRMark"; version="1.1.1"; sha256="15wr6j0v9kvbv8y6flkp4svfqy059ziv89nxv91vp0pjmavhpdlz"; depends=[ellipse MCMCpack mvtnorm]; broken = true; }; + DOBAD = derive2 { name="DOBAD"; version="1.0.6"; sha256="0ifrrfm4yp1416z58qgnak042rgj1xvqby2vvzgrv19z6b3250p3"; depends=[lattice Matrix numDeriv]; broken = true; }; DPWeibull = derive2 { name="DPWeibull"; version="1.8"; sha256="05sasi42cakq0k3syvn2hnvb0sl2dflw6x98riwgrjvsmnw6bh2g"; depends=[binaryLogic prodlim Rcpp RcppArmadillo survival truncdist]; broken = true; }; DSsim = derive2 { name="DSsim"; version="1.1.5"; sha256="0dr8dc91m7s5c198k9cb26a09f14wb8ihr46c0mr9cg33l2wf3nv"; depends=[fields mgcv mrds rgeos shapefiles sp splancs]; broken = true; }; DStree = derive2 { name="DStree"; version="1.0"; sha256="14wba25ylmsyrndh007kl377dv4r34wr1555yxl6kyxrs4yg3jir"; depends=[Ecdat pec Rcpp rpart rpart_plot survival]; broken = true; }; @@ -20829,7 +21153,6 @@ in with self; { DWBmodelUN = derive2 { name="DWBmodelUN"; version="1.0.0"; sha256="1m71fx9l2rq27d2q5hiqxiyljvf5wjcfkcblqw19rpiixrinv4va"; depends=[dygraphs htmltools ncdf4 raster rgdal]; broken = true; }; Data2LD = derive2 { name="Data2LD"; version="3.2.1"; sha256="1y6nyysm96q5mlrcl0vkjhq5lr624n2266xpmyl4ck0h1dhjb6bz"; depends=[deSolve fda knitr rmarkdown]; broken = true; }; DataEntry = derive2 { name="DataEntry"; version="0.9-3"; sha256="0gfsg7wfwy88x7y1dwpgwi6fkizjnhrzj0a5ij70y4a4sjmyiy55"; depends=[digest gWidgets2 gWidgets2RGtk2 RGtk2]; broken = true; }; - DataPackageR = derive2 { name="DataPackageR"; version="0.15.8"; sha256="0jrla69v47nycrqb4lccw2s2qabk2l9nm4sgwd1lfpq1zl8b3jwg"; depends=[assertthat crayon desc devtools digest futile_logger knitr purrr rmarkdown roxygen2 rprojroot stringr usethis yaml]; broken = true; }; DeLorean = derive2 { name="DeLorean"; version="1.5.0"; sha256="1ry6j4mvxms9hddi9c56p9yhjh66fzss41wqkf6xq398h1wbn4q1"; depends=[BH broom coda dplyr fastICA functional ggplot2 kernlab lattice MASS memoise Rcpp RcppEigen reshape2 rstan rstantools seriation StanHeaders stringr]; broken = true; }; DeducerPlugInExample = derive2 { name="DeducerPlugInExample"; version="0.2-0"; sha256="03aw7wr957xzw920ybyzxnck5kx0q2xpcrpq8jh2afyzszy6hzbi"; depends=[Deducer]; broken = true; }; DeducerPlugInScaling = derive2 { name="DeducerPlugInScaling"; version="0.1-0"; sha256="1qg11vi4szznchh54p9345jbmrfzfr9z5l3x5xz4m86myjkys1mb"; depends=[Deducer GPArotation irr klaR mvnormtest psych]; broken = true; }; @@ -20867,6 +21190,8 @@ in with self; { EDFIR = derive2 { name="EDFIR"; version="1.0"; sha256="0nv1badyg1dri6z91fvs68a72g22vdg0rpi3fkpxw527r11fvrrv"; depends=[geometry lpSolve MASS vertexenum]; broken = true; }; EIAdata = derive2 { name="EIAdata"; version="0.1.3"; sha256="0cx8x16jn8pfik7yd6vfqh23fqlfxnfj3ya42h5zbvsbka8rislh"; depends=[httr XML xts zoo]; broken = true; }; EILA = derive2 { name="EILA"; version="0.1-2"; sha256="0wxl9k4fa0f7jadw3lvn97iwy7n2d02m8wvm9slnhr2n8r8sx3hb"; depends=[class quantreg]; broken = true; }; + ELCIC = derive2 { name="ELCIC"; version="0.2.1"; sha256="1yflpbnqjcz47jyf3w32x5gra576q2f401p19zy0fz2cyradiggm"; depends=[bindata geepack MASS mvtnorm PoisNor wgeesel]; broken = true; }; + EMAtools = derive2 { name="EMAtools"; version="0.1.4"; sha256="0gx55ddw7dz1lm599i0gj15dlc3m58a8rf223hiykszb5c8bi372"; depends=[anytime DataCombine ggplot2 lmerTest plyr sjstats]; broken = true; }; EMC = derive2 { name="EMC"; version="1.3"; sha256="0sdpxf229z3j67mr9s7z4adzvvphgvynna09xkkpdj21mpml23p6"; depends=[MASS mvtnorm]; broken = true; }; EMVS = derive2 { name="EMVS"; version="1.2.1"; sha256="1aikms2i77hwv6hrk8kn9wrh1v5j5zm918cwdwm5s6cy8fcqf406"; depends=[Rcpp RcppArmadillo]; broken = true; }; EPGMr = derive2 { name="EPGMr"; version="1.0.0"; sha256="1ii4lccv4hyydy3sd5l7c22pgx27x3mdml20sfbdj85pmpyab6q9"; depends=[]; broken = true; }; @@ -20878,7 +21203,6 @@ in with self; { EcoHydRology = derive2 { name="EcoHydRology"; version="0.4.12.1"; sha256="075kgy6cxppkclk6nj5xs1f5yv9w8cpr09xwhf2101a6wswknb88"; depends=[DEoptim operators topmodel XML]; broken = true; }; EffectsRelBaseline = derive2 { name="EffectsRelBaseline"; version="0.5"; sha256="1dsnakcrgmlx44599ii92wvhxbxrh0hij59709wsskx1x1152zvh"; depends=[]; broken = true; }; ElectionsLATAM = derive2 { name="ElectionsLATAM"; version="0.1.1"; sha256="0xs3qff1ayq12cr7xszxvzmyihs4p9vsyrwcglll794vj096ylz4"; depends=[boot dplyr foreign lgr magrittr networkD3 R6 readr readxl testthat webshot]; broken = true; }; - EloOptimized = derive2 { name="EloOptimized"; version="0.3.1"; sha256="09bg1gm8jhjj0r7yzdgi2zlyavrizgiljwh26mpb6ng6p5mkliid"; depends=[BAMMtools dplyr lubridate magrittr reshape2 rlang]; broken = true; }; ElstonStewart = derive2 { name="ElstonStewart"; version="1.2"; sha256="1lsapsz8w8srdqdkxvlg5nsn157wbihxjgdaf53r5iaxzcljkzxc"; depends=[digest kinship2]; broken = true; }; EntropyExplorer = derive2 { name="EntropyExplorer"; version="1.1"; sha256="02ljnq9ayxg4lrrnb6nlxr1k5ki8dd5i8hjb9fvvb19hwr2id5h4"; depends=[]; broken = true; }; EnvExpInd = derive2 { name="EnvExpInd"; version="0.1.0"; sha256="063f3c10a7k9j3f85xilj1s6dd9ky5sw8sbvhzkhg5hg92c9dpns"; depends=[dplyr gstat maptools RCurl sp stringi zoo]; broken = true; }; @@ -20887,8 +21211,9 @@ in with self; { Eplot = derive2 { name="Eplot"; version="1.0"; sha256="1glmkjjj432z9g4gi56pgvfrm5w86iplirnd5hm4s99qci2hgc64"; depends=[]; broken = true; }; EstHer = derive2 { name="EstHer"; version="1.0"; sha256="1j8sczwfzil16j85mw5d1c7cxy7wimh0qq7zhmkh7mfnr36m9phr"; depends=[glmnet MASS Rcpp RcppArmadillo]; broken = true; }; EstSimPDMP = derive2 { name="EstSimPDMP"; version="1.2"; sha256="05gp0gdix4d98111sky8y88p33qr5w4vffkp6mg9klggn37kdj8j"; depends=[]; broken = true; }; - Eunomia = derive2 { name="Eunomia"; version="1.0.1"; sha256="06a42qsf3nx1pbynikkdvmbhh1rmgnfmiggdn86b3a0ij6cq0p2r"; depends=[DatabaseConnector RSQLite SqlRender]; broken = true; }; + Euronext = derive2 { name="Euronext"; version="2.0.2"; sha256="09pj10rc3rhwpdxyh6np4978jjg74k8c7m8di7c7j70ran270ybq"; depends=[dplyr flextable highcharter httr httr2 jsonlite magrittr rlang rvest stringr xts]; broken = true; }; EvalEst = derive2 { name="EvalEst"; version="2021.2-1"; sha256="0ws7x0dkzb3h2m801dkzx2as146whm63mcipy4iia90jd9944zir"; depends=[dse setRNG tfplot tframe]; broken = true; }; + EventStudy = derive2 { name="EventStudy"; version="0.39.2"; sha256="1z12nrkmpsv5cgm97g36vbwfdf0m1abfmwfln4xhy38d0qs61zi9"; depends=[curl data_table dplyr ggplot2 httr jsonlite magrittr miniUI purrr RColorBrewer readr rlang rstudioapi scales shiny stringr testthat tidyr]; broken = true; }; EvoRAG = derive2 { name="EvoRAG"; version="2.0"; sha256="0gb269mpl2hbx1cqakv3qicpyrlfb4k8a3a7whhg90masbgmh8f6"; depends=[]; broken = true; }; ExomeDepth = derive2 { name="ExomeDepth"; version="1.1.16"; sha256="1r7b9h5i562fa67ghisyw6ciwawfyjwrpn95kdws4dd4gqgbb9kv"; depends=[aod Biostrings dplyr GenomicAlignments GenomicRanges IRanges magrittr Rsamtools VGAM]; broken = true; }; ExprNet = derive2 { name="ExprNet"; version="1.0.0"; sha256="1cskr8mihnjihgddc44j24wkbiswm6ra1qj5nxva7klc744q5vk7"; depends=[doParallel foreach here igraph]; broken = true; }; @@ -20901,10 +21226,12 @@ in with self; { FLightR = derive2 { name="FLightR"; version="0.5.4"; sha256="1lbdh4m0s12617s7sarqhlj88j3rn8zaiiwz361rx83map4vvhad"; depends=[bit CircStats circular fields geosphere ggmap ggplot2 ggsn maps mgcv nlme RcppArmadillo sf suntools truncnorm]; broken = true; }; FPCA2D = derive2 { name="FPCA2D"; version="1.0"; sha256="18bb90ppd9gd8pg9jxfyfkmlsaqk8w25fgaj9fk18ybm2nhsxqm6"; depends=[corpcor]; broken = true; }; FREG = derive2 { name="FREG"; version="1.1"; sha256="1f9ss0aj6w6n0x4np6wi3ynhhcibr5zk54gzbkgpk6q3y7pv0qs1"; depends=[fda]; broken = true; }; + FSAtools = derive2 { name="FSAtools"; version="2.0.5"; sha256="0i4grcr155vbsnw823jiwngyayzymka9k7zhsbw1f208q6xyrx4d"; depends=[]; broken = true; }; + FSMUMI = derive2 { name="FSMUMI"; version="1.0"; sha256="06ri1zi86cm4arjdlp2pha2bvcc8vz6irvd9n3ja074hv62wxcw4"; depends=[FuzzyR lsa]; broken = true; }; + FSinR = derive2 { name="FSinR"; version="2.0.5"; sha256="11ss38qpasbyym9hcfqmv254jvr8lzsw6r85dlm7xlnhfnxil59l"; depends=[caret class digest dplyr e1071 GA mlbench neuralnet prodlim purrr Rdpack rlang rpart tidyr]; broken = true; }; FacPad = derive2 { name="FacPad"; version="3.0"; sha256="0h7knzin0rfk25li127zwjsyz223w7nx959cs328p6b2azhgn59b"; depends=[MASS Rlab]; broken = true; }; FactMixtAnalysis = derive2 { name="FactMixtAnalysis"; version="1.0"; sha256="1l4wfp39b7g38vdk6jpd5zq08sjhsg0s71f662aca2rj6l3a2x3r"; depends=[MASS mvtnorm]; broken = true; }; FactorsR = derive2 { name="FactorsR"; version="1.5"; sha256="1rla44g75hrqalrblr1yaawmyixmivlacn50marqgd9fjh8blgcd"; depends=[]; broken = true; }; - FamEvent = derive2 { name="FamEvent"; version="3.0"; sha256="1f2cfbd799gkva0jyf7x6x37x95nlg1zv85h85irkwh0kfwk55gh"; depends=[cmprsk eha kinship2 MASS pracma survival truncnorm]; broken = true; }; FastHCS = derive2 { name="FastHCS"; version="0.0.7"; sha256="0l3fi3siwg2jhsj0jbhgccx8pnwd8h8f4z37g1najb41hw8dwn8d"; depends=[matrixStats Rcpp RcppEigen]; broken = true; }; FastLZeroSpikeInference = derive2 { name="FastLZeroSpikeInference"; version="2018.12.10"; sha256="0ybpmns7bc1j5xzqjl7734grihmvvpa3h52gixv3h70l0r89d8ys"; depends=[]; broken = true; }; FcircSEC = derive2 { name="FcircSEC"; version="1.0.0"; sha256="06c1n0xx1q0zh16bgylwbvqzp8q4c5bj626shm2c6r8f9kcjgysh"; depends=[Biostrings seqRFLP stringi]; broken = true; }; @@ -20925,6 +21252,7 @@ in with self; { G1DBN = derive2 { name="G1DBN"; version="3.1.1"; sha256="015rw3bpz32a8254janddgg1ip947qgcvmiwx5r3v7g8n854bwxn"; depends=[igraph MASS]; broken = true; }; GABi = derive2 { name="GABi"; version="0.1"; sha256="1zmiaqbd1jrpiz9hk16s8rggcpl3xyyhjkkdliymx2p42vy5b5mf"; depends=[hash]; broken = true; }; GADMTools = derive2 { name="GADMTools"; version="3.9-1"; sha256="0l62gsd3sdyvhsw7bqvgn3fv15xwm13y9nsm8r9fgcqbfpw45g32"; depends=[classInt dplyr ggmap ggplot2 ggspatial gridExtra jsonlite lattice maptools prettymapr raster RColorBrewer rgdal rgeos rosm sf sp stringr]; broken = true; }; + GAabbreviate = derive2 { name="GAabbreviate"; version="1.3"; sha256="0cq6bg3w0ji44rsz1p4j17fk0jg8rafbjixwi3fjdndc3yd874r5"; depends=[GA psych]; broken = true; }; GBcurves = derive2 { name="GBcurves"; version="0.1.6"; sha256="1agd7nkgahhwcc5p1zybnd6xws0kr0ggk70aznxfn2nijhw7sqwr"; depends=[curl functional httr magrittr readxl rvest xml2 xts]; broken = true; }; GCAI_bias = derive2 { name="GCAI.bias"; version="1.0"; sha256="10092mwpmfbcga0n39a0i6g8xxch8xiwg15cckipw6yxjyx0sivc"; depends=[]; broken = true; }; GENEAsphere = derive2 { name="GENEAsphere"; version="1.5.1"; sha256="1kgj7i9v2yn0b8lvvsf0nc6lg3i2syrcygwa51pcrzp57vv7hxn5"; depends=[GENEAread ggplot2 MASS misc3d rgl]; broken = true; }; @@ -20941,6 +21269,7 @@ in with self; { GRANCore = derive2 { name="GRANCore"; version="0.2.7"; sha256="0xnm7jb2s4ag4qvsfs1fq0f2ikvfqm3bvxhj8kmmxwynwl5pw287"; depends=[switchr]; broken = true; }; GRPtests = derive2 { name="GRPtests"; version="0.1.2"; sha256="12w0vskf1n31zspk3vjgdlhrjwpsysvwwr0l0vm57j6faqc31i3s"; depends=[glmnet MASS randomForest ranger RPtests]; broken = true; }; GSAgm = derive2 { name="GSAgm"; version="1.0"; sha256="18bhk67rpss6gg1ncaj0nrz0wbfxv7kvy1cxria083vi60z0vwbb"; depends=[edgeR survival]; broken = true; }; + GSNA = derive2 { name="GSNA"; version="0.1.4.2"; sha256="0id71ik7s1hl57nzy3qzrdszvy3a83gf3gx8xwdswy53r6yiijf2"; depends=[circlize dendextend dplyr DT ggplot2 igraph Matrix psych raster Rcpp stringi stringr tibble tidyr tmod withr]; broken = true; }; GWG = derive2 { name="GWG"; version="1.0"; sha256="1va0cd229dhhi1lmrkpwapcm96hrdmxilrmba02xnl7ikhisw0my"; depends=[]; broken = true; }; GWPR_light = derive2 { name="GWPR.light"; version="0.2.1"; sha256="0ilgmdsfdrbam86vvlzm1avd337rqq1al0cvrl6i5cjpwaffncih"; depends=[data_table doParallel dplyr foreach GWmodel iterators lmtest plm sp]; broken = true; }; GaDiFPT = derive2 { name="GaDiFPT"; version="1.0"; sha256="15fnj1w30h0zdj032f3js0bbb1qlyk4b54a4aclykwzicqdgalkg"; depends=[]; broken = true; }; @@ -20966,6 +21295,7 @@ in with self; { GlobalDeviance = derive2 { name="GlobalDeviance"; version="0.4"; sha256="0s318arq2kmn8fh0rd5hd1h9wmadr9q8yw8ramsjzvdc41bxqq1a"; depends=[snowfall]; broken = true; }; GlobalFit = derive2 { name="GlobalFit"; version="1.2"; sha256="01s51nxcsl8xxn6khbv5jsvpwblwf0iamvr477a1rraqqqj94zx0"; depends=[sybil]; broken = true; }; GmAMisc = derive2 { name="GmAMisc"; version="1.2.1"; sha256="0rvdphdgk1bdfamwf6spy5k9qa5ws92mvf3q3dlhn6qfazp7j4hr"; depends=[caTools classInt cluster coin corrplot DescTools dismo ggplot2 ggrepel gridExtra Hmisc InPosition kimisc lsr maptools plyr pROC raster RcmdrMisc rgdal rgeos sp spatstat_core spatstat_geom spatstat_random]; broken = true; }; + GraphPCA = derive2 { name="GraphPCA"; version="1.1"; sha256="0x6j3lyd70zc0c1al1407ma8crzi174d5dqkz6lx4vx24knrlhbs"; depends=[FactoMineR ggplot2 ggplot2movies scatterplot3d]; broken = true; }; GrassmannOptim = derive2 { name="GrassmannOptim"; version="2.0.1"; sha256="1gdjx9dazrff2nj16044b7vr7jwddf5cj0iwnlhan46fnibsfwjf"; depends=[Matrix]; broken = true; }; GuessCompx = derive2 { name="GuessCompx"; version="1.0.3"; sha256="1xbkh1wh2z0n964w8lwi7q4rr7mls0awf5k7n5jjklhq4b6gswic"; depends=[boot dplyr ggplot2 lubridate reshape2]; broken = true; }; GxM = derive2 { name="GxM"; version="1.1"; sha256="02rv8qb46ylk22iqn9cgh63vkyrg9a8nr1d0d3j5hqhi0wyhc41r"; depends=[minqa nlme Rcpp]; broken = true; }; @@ -20983,7 +21313,10 @@ in with self; { HIest = derive2 { name="HIest"; version="2.0"; sha256="0ik55kxhzjyg6z6072iz9nfaj7x1nvf91l1kysgvkjccr6jf3y86"; depends=[nnet]; broken = true; }; HLSM = derive2 { name="HLSM"; version="0.9.0"; sha256="1nvjgv8lbqpig9snnxm3k1qs1r7bf43gw7a3prj9l3kmqdd0i4j3"; depends=[abind coda igraph MASS]; broken = true; }; HMMCont = derive2 { name="HMMCont"; version="1.0"; sha256="1drni4f72x83sprn65wnhw0pv1q8lfkgmxdr9h4rwv1accril85x"; depends=[]; broken = true; }; + HMMcopula = derive2 { name="HMMcopula"; version="1.0.4"; sha256="1gmvav02r3miaq4jx05qjcgzw5qv6w1j77vck5gpps8p38zcp34m"; depends=[copula doParallel foreach matrixcalc mvtnorm]; broken = true; }; + HMVD = derive2 { name="HMVD"; version="1.0"; sha256="0agzvsl2n3zg3i519b93jqpiq9zix0bbrjdzk3ymsbb42dzkmj0d"; depends=[MASS]; broken = true; }; HPbayes = derive2 { name="HPbayes"; version="0.1"; sha256="1kpqnv7ymf95sgb0ik7npc4qfkzc1zb483vwnjpba4f42jhf508y"; depends=[boot corpcor MASS mvtnorm numDeriv]; broken = true; }; + HRM = derive2 { name="HRM"; version="1.2.1"; sha256="0qsxwi0v61k1waw21nrz86jazd5wgq2drhan3w8pmb35q2z20s35"; depends=[data_table doBy ggplot2 MASS matrixcalc mvtnorm plyr pseudorank Rcpp reshape2 xtable]; broken = true; }; HRM_curve = derive2 { name="HRM.curve"; version="0.0.1"; sha256="0p3kvldpz347c0cdjkrdm0x2nfj85hm5cp59lirqhq77hf1zfnd5"; depends=[]; broken = true; }; HSAR = derive2 { name="HSAR"; version="0.5.1"; sha256="03ryscvgiiwjcqk6gy3251nqqk43x508kz3ibw35hi84m2s7fsxj"; depends=[Rcpp RcppArmadillo spatialreg spdep]; broken = true; }; HW_pval = derive2 { name="HW.pval"; version="1.0"; sha256="14nmyqw2d9cmn64789yc54fmiqanh6n1dizp7vj94h7b0jwq63yy"; depends=[]; broken = true; }; @@ -20997,11 +21330,13 @@ in with self; { HierDpart = derive2 { name="HierDpart"; version="1.5.0"; sha256="10sphan6slzj6bsbzff4z7pglkjhv6xy719dm7594fmgqfjz0ici"; depends=[ade4 adegenet ape diveRsity entropart GGally ggplot2 hierfstat mmod pegas permute reshape2 tibble vegan]; broken = true; }; HierO = derive2 { name="HierO"; version="0.2"; sha256="1lqj5grjly4kzxl7wb192aagz2kdvpnjdan2kcg5yxwvg1xcvwv1"; depends=[bitops RCurl rneos tcltk2 XML]; broken = true; }; HierPorfolios = derive2 { name="HierPorfolios"; version="0.1.0"; sha256="0lx10lnslal689ykp7idvngc074yhfx3mkddyrax91djnqsc8aq4"; depends=[cluster fastcluster RiskPortfolios]; broken = true; }; + HistogramTools = derive2 { name="HistogramTools"; version="0.3.2"; sha256="1wkv6ypn006d8j6bpbhc1knw0bky4y8r7jp87482yd19q5ljsgv0"; depends=[ash Hmisc stringr]; broken = true; }; Holidays = derive2 { name="Holidays"; version="1.0-7"; sha256="1srfbhlrf0pd6gzhp4hbic555lb7camk084rn1qz2g7fjvyijqiq"; depends=[TimeWarp]; broken = true; }; HostSwitch = derive2 { name="HostSwitch"; version="0.1.3"; sha256="1937rjjz3lzriym1brjfpp1b02zd40ry4205yrkrs3vxp1lp4234"; depends=[checkmate ggplot2 shiny tippy]; broken = true; }; HyPhy = derive2 { name="HyPhy"; version="1.0"; sha256="0994ymv7sswbp8qw3pay34s926cflw2hq2gnchw7rknybvlsrinq"; depends=[ape R_utils]; broken = true; }; HybridMC = derive2 { name="HybridMC"; version="0.2"; sha256="1wgzfyk0scwq9s2sdmc91fj7r4d7zlgwgnj6mdiia8w88ja8kzqy"; depends=[coda]; broken = true; }; HydeNet = derive2 { name="HydeNet"; version="0.10.11"; sha256="1qi87k2drizqba1nz8psh697ks8ai8xz492kzsrs76xlxpbk1i9k"; depends=[checkmate DiagrammeR dplyr graph magrittr nnet pixiedust plyr rjags stringr]; broken = true; }; + HypergeoMat = derive2 { name="HypergeoMat"; version="4.0.2"; sha256="06ljg2v0dbqi9mf2l236p616x62cbx4q05qymbsj8inmajwv0piz"; depends=[EigenR gsl JuliaConnectoR Rcpp RcppEigen]; broken = true; }; IAbin = derive2 { name="IAbin"; version="1.0"; sha256="1cpj2mx72n4v0yd8jbbnhj2w5d0sc8pw7rc8ahnn1hfa38pwwsyx"; depends=[]; broken = true; }; IBDLabels = derive2 { name="IBDLabels"; version="1.1"; sha256="1m9fd058yjxva6hin7i72i2nl285wfm0jkdn5xcng27yqlijyrm9"; depends=[]; broken = true; }; IBDhaploRtools = derive2 { name="IBDhaploRtools"; version="1.8"; sha256="1754239pdil6b383mpzyi8zb9l9hzg15dwgn5246v97g1y3mlp5r"; depends=[]; broken = true; }; @@ -21041,6 +21376,7 @@ in with self; { Interpol_T = derive2 { name="Interpol.T"; version="2.1.1"; sha256="1fbsl1ypkc65y6c0p32gpi2a2aal8jg02mclz7ri57hf4c1k09gz"; depends=[chron date]; broken = true; }; IsoCI = derive2 { name="IsoCI"; version="1.1"; sha256="0r7ksfic6p2v95c953s4gbzzclk4ldxysm8szb8xba1w0nx2izil"; depends=[KernSmooth]; broken = true; }; IsoCorr = derive2 { name="IsoCorr"; version="1.0"; sha256="0rhbclbpfd9d0dawbwwprlzx2j9k59gsmrb11yabiv5305b7vpx8"; depends=[]; broken = true; }; + IsoGene = derive2 { name="IsoGene"; version="1.0-24"; sha256="0flm0mszankvl3aizwsazyhvz2xkr4gfqiqywpc0r1swqj19610r"; depends=[affy Biobase ff Iso xtable]; broken = true; }; JASPAR = derive2 { name="JASPAR"; version="0.0.1"; sha256="0wiyn7cz45hwy9zkvacx28zdrg78q6715cg4r9xgcb39q25s0dcy"; depends=[gtools]; broken = true; }; JGEE = derive2 { name="JGEE"; version="1.1"; sha256="078348n623hlyc3n9yh67vv5acsnxapmbwybvrb1i7kawmqw5msi"; depends=[gee MASS]; broken = true; }; JMcmprsk = derive2 { name="JMcmprsk"; version="0.9.10"; sha256="1hkylfrr2036vgkxfs98szm3883bmyvvyr0f3a8xygccf3pn28xc"; depends=[dplyr MASS pracma Rcpp reshape2 statmod]; broken = true; }; @@ -21068,6 +21404,7 @@ in with self; { LDOD = derive2 { name="LDOD"; version="1.0"; sha256="0mf2sy01yv57mqicrz08a17m6crigklx6fmw9zpxv7g85qw1iq4v"; depends=[Rmpfr Rsolnp]; broken = true; }; LDPD = derive2 { name="LDPD"; version="1.1.2"; sha256="1khdx8vwlpliyjc4sxcdiywbxl8lc9f5s3457vcip1j8dv537lbm"; depends=[MASS nleqslv]; broken = true; }; LDheatmap = derive2 { name="LDheatmap"; version="1.0-6"; sha256="0gr99kys1ahyl8s6cbj6rmh4vwid8kn92lcbjnwh0ahb73m2xjjc"; depends=[genetics Rcpp snpStats]; broken = true; }; + LEANR = derive2 { name="LEANR"; version="1.4.9"; sha256="053xy13ys5hibafdnbkwqdk36hw7dhanp4frfacpfpn5f9nfh95r"; depends=[foreach igraph]; broken = true; }; LEAP = derive2 { name="LEAP"; version="0.2"; sha256="1yrhanxvr7krvllqzv17qkc4wvmd7mgl57am8sn53773dbfipfc4"; depends=[]; broken = true; }; LEAPFrOG = derive2 { name="LEAPFrOG"; version="1.0.7"; sha256="0z9ahkk4qzc45h1r806frv9cd84vvshvn5mr84gx7qdxljfkfq6h"; depends=[alabama MASS]; broken = true; }; LICORS = derive2 { name="LICORS"; version="0.2.0"; sha256="0p9y21k1mj1v397jpb5g6jiw7rpzbyfwr4kv2rp3lyxyasy2ykf0"; depends=[fields FNN locfit Matrix mvtnorm RColorBrewer zoo]; broken = true; }; @@ -21088,10 +21425,12 @@ in with self; { LinearDetect = derive2 { name="LinearDetect"; version="0.1.5"; sha256="0i79k42avcv2nhk9p71a74zv8d204jgqzrs2mni6zp8brhwmxlki"; depends=[factoextra ggplot2 glmnet mvtnorm Rcpp RcppArmadillo sparsevar]; broken = true; }; LocFDRPois = derive2 { name="LocFDRPois"; version="1.0.0"; sha256="0zzdp9wgwr6wn3grimghpj4vq34x37c8bqg8acfzlzih8frqal3r"; depends=[dplyr ggplot2]; broken = true; }; LocalControlStrategy = derive2 { name="LocalControlStrategy"; version="1.4"; sha256="1slkhgac7izkmp5g203lhzvh991mnqf2qz1m0nd1k89084wvkv7b"; depends=[cluster lattice]; broken = true; }; + Lock5withR = derive2 { name="Lock5withR"; version="1.2.2"; sha256="10x3i11pb4cig4pgfmw9984na5zjbg7d41y6crakiimf53ihx0c2"; depends=[]; broken = true; }; LogisticDx = derive2 { name="LogisticDx"; version="0.3"; sha256="1hry32grqwlarp0cplx8szf4pf7ml1nxd11ahffmr72ihcv5ckga"; depends=[aod data_table pROC RColorBrewer rms speedglm statmod]; broken = true; }; LogitNet = derive2 { name="LogitNet"; version="0.1-1"; sha256="08xi5rpbqkc1b3qj24blv3l0r68wcqbsbjcqxiypm75f3c2irc4i"; depends=[]; broken = true; }; LogrankA = derive2 { name="LogrankA"; version="1.0"; sha256="005zkpzi8h03qvqlpkygrf9xv4q77klafkfxw47x04jvkhklwigb"; depends=[]; broken = true; }; - M3 = derive2 { name="M3"; version="0.3"; sha256="1l40alk166lshckqp72k5zmsgm7s5mgyzxlp11l64mgncjwkw2r3"; depends=[mapdata maps ncdf4 rgdal]; broken = true; }; + LotkasLaw = derive2 { name="LotkasLaw"; version="0.0.1.0"; sha256="11kq52yavicimp7ll7ljrs69a5fxf68ydb9md7v6b02iw5mwbmz7"; depends=[]; broken = true; }; + MACP = derive2 { name="MACP"; version="0.1.0"; sha256="097qqqv0xmkm8cc5a2zr96lnnrkw92nzr3cj4sfnfa6whlpi72fn"; depends=[caret dplyr fmsb ggplot2 Hmisc igraph lsa pROC PRROC stringr tibble tidyr WGCNA zoo]; broken = true; }; MAFDash = derive2 { name="MAFDash"; version="0.2.1"; sha256="11d503sw423ddawj8lapxpm59532nxz4b6wh06fn4kqzh0gq1mbj"; depends=[bsplus canvasXpress circlize ComplexHeatmap crosstalk data_table dplyr DT ensurer flexdashboard GenomicRanges ggbeeswarm ggplot2 htmltools IRanges knitr maftools pheatmap plotly readr reshape2 rmarkdown TCGAbiolinks tibble tidyr]; broken = true; }; MAPLES = derive2 { name="MAPLES"; version="1.0"; sha256="0hzsh7z1k7qazpxjqbm9842zgdpl51irg7yfd119a7b2sd3a8li9"; depends=[mgcv]; broken = true; }; MARX = derive2 { name="MARX"; version="0.2"; sha256="1rc87hz719khl8mclbkfdix499nsc4nyihaaavd73nany7iprm02"; depends=[fBasics matlab metRology stabledist tseries]; broken = true; }; @@ -21099,7 +21438,6 @@ in with self; { MAVTgsa = derive2 { name="MAVTgsa"; version="1.3"; sha256="0rzal9nsi8y873cbf6hrdyzyxnpd4r1yr9fj66cn0s1c8g93ls0y"; depends=[corpcor foreach MASS multcomp randomForest]; broken = true; }; MAc = derive2 { name="MAc"; version="1.1.1"; sha256="1dawqmziffaz8wgcqzwc0yifdq65abgn24vafkrwa9850048c26f"; depends=[]; broken = true; }; MAclinical = derive2 { name="MAclinical"; version="1.0-5"; sha256="1g0ka1kqww2xim8rp5rznkzn0a541zvf841s3lbphfh9k3y3ixs3"; depends=[e1071 party plsgenomics st]; broken = true; }; - MBCbook = derive2 { name="MBCbook"; version="0.1.1"; sha256="0jmvgyzrahnxfkwdn86k3ffk0zfbbd34ya4zmlnsmp2m9xds7lgn"; depends=[MASS mclust mvtnorm Rmixmod]; broken = true; }; MBCluster_Seq = derive2 { name="MBCluster.Seq"; version="1.0"; sha256="0xbi2r0g0gzsy05qrq1ljr5f5s3glwxj204vk2f1lgwdx3fd116m"; depends=[]; broken = true; }; MBI = derive2 { name="MBI"; version="1.0"; sha256="1lb0sjwa6x360n9a9pagz6yhxh37gxq1fk0f5c3i2sd56ny9jpns"; depends=[]; broken = true; }; MC2toPath = derive2 { name="MC2toPath"; version="0.0.16"; sha256="0jdn9wpxavn2wrml907v23mfxr62wwjdh7487ihjj59g434ry7wh"; depends=[RNetCDF]; broken = true; }; @@ -21115,6 +21453,7 @@ in with self; { MHMM = derive2 { name="MHMM"; version="1.0.0"; sha256="0d3djaydw0h7x3vlaghrbgmx024rgv36wfsjhlixzzssb2d6lqzi"; depends=[BH ggplot2 gridExtra Rcpp RcppArmadillo reshape2]; broken = true; }; MHTcop = derive2 { name="MHTcop"; version="0.1.1"; sha256="1mr8y8brsi37b5qx3fqm0bj90dgknzzwhxfmvyd9kxbxh19whgxq"; depends=[copula matrixStats MCMCpack mvtnorm stabledist]; broken = true; }; MHadaptive = derive2 { name="MHadaptive"; version="1.1-8"; sha256="1w3bm82v8ahxrf0vqn0pznv7dqn212drinkz8y5kr1flx423l9ws"; depends=[MASS]; broken = true; }; + MIDASwrappeR = derive2 { name="MIDASwrappeR"; version="0.5.1"; sha256="07108dg16i20fg6cvsnbflfz65smwk08vjmf1b193zyvhdikwhfm"; depends=[Rcpp]; broken = true; }; MIICD = derive2 { name="MIICD"; version="2.4"; sha256="1xlvhyh3gg77cym10i8hrxm8r1jm4plvny2c4izic6w89snplyq6"; depends=[MASS mstate survival]; broken = true; }; MILC = derive2 { name="MILC"; version="1.0"; sha256="14xsiw5al6kixwvf3ph0dlm8s13gsbqvzb92da6ng3x4iiyb1g0w"; depends=[]; broken = true; }; MIPHENO = derive2 { name="MIPHENO"; version="1.2"; sha256="0hcaq66biv4izszdhqkgxgz91mgkjk1yrwq27fx07a2zmzj44sfv"; depends=[doBy gdata]; broken = true; }; @@ -21133,6 +21472,7 @@ in with self; { MOrder = derive2 { name="MOrder"; version="0.1"; sha256="1vhy20xyvfc18f04hvlb1jm2n0caaz8ysy13w2rra5i4kjdvz52i"; depends=[]; broken = true; }; MPAgenomics = derive2 { name="MPAgenomics"; version="1.2.3"; sha256="0096jy94zpbbd2n862hc4m3i4s7vpl2q3vybx96hvv6qi1ny47cm"; depends=[changepoint glmnet HDPenReg R_utils spikeslab]; broken = true; }; MPINet = derive2 { name="MPINet"; version="1.0"; sha256="1zw3piqhhpagg5qahc2xahxxfdwdk8w94aass1virlpl0f52ik8s"; depends=[BiasedUrn mgcv]; broken = true; }; + MPLikelihoodWB = derive2 { name="MPLikelihoodWB"; version="1.1"; sha256="0xgj349jkv29ldia4lmsiwnkhrk99aqcrvyiy3si5knmi1jvx9q0"; depends=[MASS survival]; broken = true; }; MPR_genotyping = derive2 { name="MPR.genotyping"; version="0.8"; sha256="0lsrbks7nhfnrmk8kclh09rc132j3divjxrzjfrg8zijbzkfx1pn"; depends=[qtl]; broken = true; }; MPkn = derive2 { name="MPkn"; version="0.1.0"; sha256="0nvd6sv1wypcmphm0wcymbibcxrqzx3c9s9b191p1pmxyz607vxv"; depends=[]; broken = true; }; MRCV = derive2 { name="MRCV"; version="0.3-3"; sha256="0m29mpsd3kackwrawvahi22j0aghfb12x9j18xk4x1w4bkpiscmf"; depends=[tables]; broken = true; }; @@ -21140,7 +21480,7 @@ in with self; { MRMR = derive2 { name="MRMR"; version="0.1.4"; sha256="0dgbhlynaaka7mdzl6igwgcdzvy6cm2y8mbxaf9pfla8w3z8y0lq"; depends=[ggplot2 lmtest lubridate plyr reshape2]; broken = true; }; MRsurv = derive2 { name="MRsurv"; version="0.2"; sha256="148myzk6r8whkpv1yv59dmdlr2n8vdwmaww165aw696xfjxwq550"; depends=[mvtnorm survival]; broken = true; }; MSGLasso = derive2 { name="MSGLasso"; version="2.1"; sha256="1k17vnvzr647pwfbdxrpqcsp34iygq86wf0ns4rq8cj6q5mik1bv"; depends=[]; broken = true; }; - MSTest = derive2 { name="MSTest"; version="0.1.1"; sha256="0icrpzvgbr84scx44lkg0r3f0x6hppqqikcnr0hpsbg6125ihq5f"; depends=[foreach GA GenSA lmf nloptr numDeriv pso Rcpp RcppArmadillo rlang]; broken = true; }; + MSQC = derive2 { name="MSQC"; version="1.1.0"; sha256="1irs750n38513si9gw2fs9xibmlw0g3yd9w3rfcj7gbbgp2l6p4f"; depends=[rgl]; broken = true; }; MSinference = derive2 { name="MSinference"; version="0.1.0"; sha256="1016i5khs5sh90ywffwkl1jjj3j08iw9hs1zhw08xz9p6sj6qz9n"; depends=[doParallel foreach Rcpp Rdpack]; broken = true; }; MVB = derive2 { name="MVB"; version="1.1"; sha256="0an8b594rknlcz6zxjva6br8f34sgwdi2jil3xh1xzb5fa55dw0f"; depends=[Rcpp RcppArmadillo]; broken = true; }; MWLasso = derive2 { name="MWLasso"; version="1.3.1"; sha256="11lyk46lmjcd60q0mixi41b8ybjgyp1xi18g3ag4450xyhw3r17s"; depends=[]; broken = true; }; @@ -21176,7 +21516,6 @@ in with self; { MinBAR = derive2 { name="MinBAR"; version="1.1.3"; sha256="0d0l7sr99kg6s0pxw10zrnwz699kzqaylawymd7kggc3dag9frbx"; depends=[dismo ecospat geosphere lattice latticeExtra maxnet raster rgdal sp]; broken = true; }; Miney = derive2 { name="Miney"; version="0.1"; sha256="0sgln0653rgglinr8rns5s2az0lgyp9slmynyhhhs265grkhrfj0"; depends=[]; broken = true; }; MinkowskiSum = derive2 { name="MinkowskiSum"; version="1.0.0"; sha256="1v7i3jzj65y8xy8kyl4jp651pqk5xd9bbfj8az1443ng9l39n57h"; depends=[BH data_table gmp PolygonSoup Rcpp RcppCGAL RcppEigen]; broken = true; }; - MixAll = derive2 { name="MixAll"; version="1.5.1"; sha256="1jsh29ygy1n7lbz93ks725li9hnvfa0kp1qik13m72nmgw7g7q5a"; depends=[Rcpp rtkore]; broken = true; }; MixMAP = derive2 { name="MixMAP"; version="1.3.4"; sha256="0gxghym5ghbyxf589hda2fhv5l3x5jvm6i40x5xdwx4hadcn8k9a"; depends=[lme4]; broken = true; }; MixtureInf = derive2 { name="MixtureInf"; version="1.1"; sha256="12qcflmrpzh4w5b40xq5qicks6p0cwqpf5k84pwabkjb168afddv"; depends=[quadprog]; broken = true; }; MixtureRegLTIC = derive2 { name="MixtureRegLTIC"; version="1.0.0"; sha256="052gyk4gqv49fa2rxbxnib29f1vjxiw4q8llkfhsv8kw5pw38699"; depends=[]; broken = true; }; @@ -21194,10 +21533,12 @@ in with self; { Myrrix = derive2 { name="Myrrix"; version="1.2"; sha256="05x2h4ppjhfm0wlpwyp8ycjg59qj3gv0yqdilxrzb1lkrzln92xb"; depends=[Myrrixjars rJava]; broken = true; }; Myrrixjars = derive2 { name="Myrrixjars"; version="1.0-2"; sha256="1hhfg83z5kl6l250z3lippx3qc68k1wj1qlfzd6m66rgmk699gyl"; depends=[rJava]; broken = true; }; NB = derive2 { name="NB"; version="0.9"; sha256="1gh42z7lp6g09fsfmikxqzyvqp2874cx3a6vr96w43jfwmgi2diq"; depends=[]; broken = true; }; + NBBttest = derive2 { name="NBBttest"; version="1.0.1"; sha256="13p6kkakg2hd27xmh6vjnn8w161qaw23xzsx99pjgvz7w0n9idv3"; depends=[gplots gtools]; broken = true; }; NEff = derive2 { name="NEff"; version="1.1"; sha256="16ys1fi28kbzg3am9vz1c5pc9x0ac47pl6za04h63lspk99yplzk"; depends=[bit msm]; broken = true; }; NFP = derive2 { name="NFP"; version="0.99.4"; sha256="1ybkkqdwq72inwyak5d2598xizfph5sg3zzb855l0kpxplcqnp2f"; depends=[apcluster dplyr ggplot2 graph igraph KEGGgraph magrittr plyr stringr tidyr]; broken = true; }; NGSSEML = derive2 { name="NGSSEML"; version="2.2"; sha256="1jyjjhxq2kmm8hbsp3b27vxyin7j32056wi06gz5s02rmrhld97h"; depends=[car dlm fields interp mvtnorm]; broken = true; }; NHMM = derive2 { name="NHMM"; version="3.11"; sha256="1ynxk4dpllb3w8229dmxzjdmf0zh5cgmh3wa55d02disc6yhm77k"; depends=[BayesLogit MASS MCMCpack msm Rcpp]; broken = true; }; + NHMSAR = derive2 { name="NHMSAR"; version="1.19"; sha256="0xbnzq3zlpda1xcfiz1lsa5q5frvrsf87z3xc41fvk1n5viak5fk"; depends=[glasso lars ncvreg ucminf]; broken = true; }; NITPicker = derive2 { name="NITPicker"; version="1.0.1"; sha256="00jmin7y1bp7a4a1qcvv3rkgiy9qij7gbkxcdgpiyzcs6aaif59z"; depends=[fda fda_usc fdasrvf]; broken = true; }; NLMR = derive2 { name="NLMR"; version="1.1"; sha256="1m08nm71wbam6d8nj8akwqrm6nq5bvm3v76kdlasdgs7v36xzri6"; depends=[checkmate dplyr fasterize igraph RandomFields raster Rcpp sf spatstat_core spatstat_geom tibble]; broken = true; }; NMproject = derive2 { name="NMproject"; version="0.6.9"; sha256="0br58m07yf5bxizz3m14rbskhracyg99gq6di9a5rgzycgs3rvg4"; depends=[crayon diffobj dplyr DT dygraphs git2r htmltools lifecycle magrittr miniUI rlang rmarkdown rprojroot rstudioapi shiny stringr tidyr usethis]; broken = true; }; @@ -21205,16 +21546,20 @@ in with self; { NPC = derive2 { name="NPC"; version="1.1.0"; sha256="06y6vdln5zyinq9bsp66yz6i1v5bkw9pa2hknl9brwc75z359apn"; depends=[coin dplyr matlab permute]; broken = true; }; NPMLEmix = derive2 { name="NPMLEmix"; version="1.2"; sha256="056jb3kz34lajryfbzkhq0g372iib6h8mr74mq18xkarp5blgmsl"; depends=[CAMAN dplyr FDRreg Hmisc latexpdf Matrix mosaic pbapply pracma progress R_utils Rcpp REBayes Rmosek spatstat]; broken = true; }; NPMVCP = derive2 { name="NPMVCP"; version="1.1"; sha256="13jpm46abwziq8859jhl6hg1znk3ws1q7g4vlr2jyri3qa6h22dd"; depends=[]; broken = true; }; + NPRED = derive2 { name="NPRED"; version="1.0.7"; sha256="0nkfgc9zy3gszmnay77yj7i0p8w1q8j1m9wb05hkrmhiacp4mbn4"; depends=[]; broken = true; }; NPS = derive2 { name="NPS"; version="1.1"; sha256="02idja149a2sj97sks4lhsaflpifyxi6n0rjlcq9993f84szfgsi"; depends=[]; broken = true; }; NRAHDLTP = derive2 { name="NRAHDLTP"; version="0.1.2"; sha256="1dryd9riba3gch7z6ylszbrzw7j40b7cp1z2kyllhk4w2hzrkxm7"; depends=[expm Rcpp RcppArmadillo Rdpack readr]; broken = true; }; NSUM = derive2 { name="NSUM"; version="1.0"; sha256="1as4g3v7qlk9wxlpwhg293980jq9gy6qay77bbcrjf481gvkkbp6"; depends=[MASS MCMCpack]; broken = true; }; NetComp = derive2 { name="NetComp"; version="1.6"; sha256="11rxpdihn575diqfvc7yvxhlr2c19fig4v4a5c6jhqyfdsd60fsv"; depends=[gdata]; broken = true; }; NetData = derive2 { name="NetData"; version="0.3"; sha256="1jf05zwy0c6gmm7kvxlwvai61bz4wpsw7cl0h4i21ipzn1rqxmqj"; depends=[]; broken = true; }; + NetSci = derive2 { name="NetSci"; version="1.0.0"; sha256="1fliilk5z7lldkry5kijwab0k6ysqy87fcfrnwyywxkpxxrv1578"; depends=[binr cubature dplyr igraph magrittr Rfast wTO]; broken = true; }; NoiseFiltersR = derive2 { name="NoiseFiltersR"; version="0.1.0"; sha256="0y90si8f5hsi273g10hw700r72la30hwqlwg59gaq76wqlkm8j0p"; depends=[caret e1071 kknn MASS nnet randomForest rJava rpart RWeka]; broken = true; }; NominalLogisticBiplot = derive2 { name="NominalLogisticBiplot"; version="0.2"; sha256="0m9442d9i78x57gdwyl3ckwp1m6j27cam774zkb358dw5nmwxbmz"; depends=[gmodels MASS mirt]; broken = true; }; + NonlinearRDD = derive2 { name="NonlinearRDD"; version="0.0.4"; sha256="0jj8s8nvv5jcp74zlid0y5j4b1vl6cg4mxaw6m45wnaxansqfcq3"; depends=[copula lpcde lpdensity quantreg rddensity rdrobust Rfast]; broken = true; }; NonpModelCheck = derive2 { name="NonpModelCheck"; version="4.1"; sha256="0yd30gy1145zizdvy2zh73ppbiz3awg8j1h7j6iabqxy61h0llnw"; depends=[dr]; broken = true; }; NormalBetaPrime = derive2 { name="NormalBetaPrime"; version="2.2"; sha256="03il9c57dbwgw38rzckkk0wkc37z8kfdrb7b4k471gm7mqhsm3m3"; depends=[GIGrvg glmnet HyperbolicDist MASS Matrix pracma pscl truncnorm]; broken = true; }; NormalGamma = derive2 { name="NormalGamma"; version="1.1"; sha256="0r3hhfscif0sx9v8f450yf119gpvf3ilpb8n3ziy4v4qf2jlcfnk"; depends=[histogram optimx]; broken = true; }; + OBsMD = derive2 { name="OBsMD"; version="11.1"; sha256="0gxx3ja4ii5ql1ss43g23jrbwzg3193wchqmrdm0iq7g33mmd16y"; depends=[]; broken = true; }; OData = derive2 { name="OData"; version="0.6"; sha256="10r4kfhdabramjmkgc4fl0bljaiqbvc7rq4byas7q8cmji2czw6f"; depends=[RJSONIO XML]; broken = true; }; OLScurve = derive2 { name="OLScurve"; version="0.2.0"; sha256="1zqapfwgwy9rxnbhmlgplkphw1bdia4cyi9q6iwcppw3rjw75f1n"; depends=[lattice]; broken = true; }; ONETr = derive2 { name="ONETr"; version="1.0.3"; sha256="14l56qcmyyk2ivcfkfv7j2k4i1mfrngpi9zcc88w6xfhz5qlb548"; depends=[plyr RCurl XML]; broken = true; }; @@ -21236,7 +21581,6 @@ in with self; { OutlierDC = derive2 { name="OutlierDC"; version="0.3-0"; sha256="1vm3zx4qmj9l0ddfqbksm1qyqzzqrxf93gh4kj52h68zlsfxwv41"; depends=[Formula quantreg survival]; broken = true; }; OutlierDM = derive2 { name="OutlierDM"; version="1.1.1"; sha256="0n8iq464ryc3v4wms7cdka39870w5pg29z9v8gmdsp4d9cfsx9v4"; depends=[MatrixModels outliers pcaPP quantreg]; broken = true; }; OutrankingTools = derive2 { name="OutrankingTools"; version="1.0"; sha256="0z7pslkkinn7flc4xwjg0bsfswf8ad4jv9rmglaj3fmjcx9b6wgj"; depends=[igraph]; broken = true; }; - PAFit = derive2 { name="PAFit"; version="1.2.5"; sha256="07n27g2yy2lskna7qa4j6am3prdcwfnx98ppvcarsxgzvywz0scv"; depends=[ggplot2 igraph knitr magicaxis mapproj MASS network networkDynamic plyr RColorBrewer Rcpp VGAM]; broken = true; }; PAGI = derive2 { name="PAGI"; version="1.0"; sha256="01j1dz5ihqslpwp9yidmhw86l112l7rfkswmf03vss872mpvyp3f"; depends=[igraph]; broken = true; }; PALMO = derive2 { name="PALMO"; version="0.1.2"; sha256="0vh0i5qb26267w5dzply091dh4mcxyza7yyhh7sy2wmwb04834ak"; depends=[circlize ComplexHeatmap cowplot dplyr factoextra ggforce ggplot2 ggrepel knitr lme4 MAST pbapply pheatmap reshape2 Rtsne Seurat tidyverse]; broken = true; }; PAMA = derive2 { name="PAMA"; version="1.2.0"; sha256="12fvkcdkn66gzr193fq9byf64qlq2x9dkjv9hpfw770l4yw496jn"; depends=[ExtMallows mc2d PerMallows rankdist Rcpp]; broken = true; }; @@ -21245,6 +21589,7 @@ in with self; { PBRF = derive2 { name="PBRF"; version="1.0.0"; sha256="1ibwywgbxnxcb3z2kl2bgh7fz512nhgy2zcdym67asp76c6rkqg6"; depends=[]; broken = true; }; PCA4TS = derive2 { name="PCA4TS"; version="0.1"; sha256="1qi9nlaf5181afrdvddh10a9vxyhry102n3dhai86im8yz4if9y6"; depends=[tseries]; broken = true; }; PCRedux = derive2 { name="PCRedux"; version="1.1-2"; sha256="1x3a4pdv54ppar9fjshk0avgpxvqsar4x7fgy9w0i76fgndr7qs5"; depends=[bcp changepoint chipPCR ecp fda_usc MBmca pbapply pracma qpcR robustbase segmented shiny zoo]; broken = true; }; + PDXpower = derive2 { name="PDXpower"; version="1.0.0"; sha256="144phmshjmm891f8sd8aagm7ql6hwb1i24mbpcfgak61q7anw2xy"; depends=[frailtypack ggplot2 ggpubr nlme survival]; broken = true; }; PEMM = derive2 { name="PEMM"; version="1.0"; sha256="18dd9hsbdrnhrrff7gpdqrw2jv44j8lg0v3lkcdpbd4pppcaq84h"; depends=[]; broken = true; }; PIGShift = derive2 { name="PIGShift"; version="1.0.1"; sha256="115dnsh4b1rxx1d2kc8x3vl5366h5f0i6gg8l1w3v0f8309qigis"; depends=[ape mvtnorm]; broken = true; }; PIPS = derive2 { name="PIPS"; version="1.0.1"; sha256="1c5v3s6xys9p1q32k6mpsffhi9gwsq951rh12hs76dmak862yspc"; depends=[]; broken = true; }; @@ -21255,6 +21600,7 @@ in with self; { POFIBGE = derive2 { name="POFIBGE"; version="0.1.6"; sha256="0llam63hjf1yi6qc44bpgr6dmc4b8sy0sn8gwcgzz50apsn1glc9"; depends=[dplyr httr magrittr projmgr RCurl readr readxl survey tibble timeDate]; broken = true; }; POPdemog = derive2 { name="POPdemog"; version="1.0.3"; sha256="0j83c853ligmw8ag4pb0vj46sfn2w2ynh4wvgkabzs688hxxni8r"; depends=[]; broken = true; }; PP3 = derive2 { name="PP3"; version="1.2"; sha256="1g36al9w1rxyhfzbvpw9siqq57h2xl0zr94wysz8i0jzqkkqkrvf"; depends=[]; broken = true; }; + PRANA = derive2 { name="PRANA"; version="1.0.4"; sha256="1i9gwz4dlsz9w0z3d995w6s6f10gwvwhyb77agbmmwym1fd2k2wh"; depends=[dnapath dplyr minet robustbase]; broken = true; }; PROTOLIDAR = derive2 { name="PROTOLIDAR"; version="0.1"; sha256="0bz3071b0wlcvh40vl3dyiiixk5avsj6kjjnvlvx264i5g08rij4"; depends=[]; broken = true; }; PSIMEX = derive2 { name="PSIMEX"; version="1.1"; sha256="0cndzasvg4y49incyd9nfz8y3z88ywbc7xk0zzjir665pv2xn23b"; depends=[knitr MCMCglmm pedigree plotrix]; broken = true; }; PWD = derive2 { name="PWD"; version="1.0"; sha256="0ksr3biaqd4p5a4lv28i4cwk1fn9822ndq2161mgvc1c344p06fj"; depends=[Rcpp RcppArmadillo]; broken = true; }; @@ -21268,11 +21614,14 @@ in with self; { PatternClass = derive2 { name="PatternClass"; version="2.0.1"; sha256="1xwlk6shms38nqxad3d15254wgnkfzy7jyf5w9bbm96kg05mndbz"; depends=[landscapemetrics raster]; broken = true; }; PedCNV = derive2 { name="PedCNV"; version="0.1"; sha256="09qxcjzwdgzdkbj28rzmfv7k3q2qsiapnvx3m45a835r57h5gynp"; depends=[ggplot2 Rcpp RcppArmadillo]; broken = true; }; PerMallows = derive2 { name="PerMallows"; version="1.13"; sha256="0ny2vc8f0npixaw1kp2d93xr4g46nsg8jjwvi6afv9xjvaz0i6wy"; depends=[Rcpp]; broken = true; }; + PhViD = derive2 { name="PhViD"; version="1.0.8"; sha256="038pw24sb8ja8pbbmj05rww6413i2ljybb2dxwgrpffv22aqawmc"; depends=[LBE MCMCpack]; broken = true; }; PharmPow = derive2 { name="PharmPow"; version="1.0"; sha256="0gabkd8p4zsig9p697lyk8m2jxb5abjk81rpzd5ih1yk1qanhsn5"; depends=[scatterplot3d]; broken = true; }; Phxnlme = derive2 { name="Phxnlme"; version="1.0.0"; sha256="0h9mi8p95rp1s8xsdv38j9fpy2cy9zvjnldjmnj0n469kimp2782"; depends=[ggplot2 gridExtra lattice manipulate testthat]; broken = true; }; + PhyInsight = derive2 { name="PhyInsight"; version="0.1.0"; sha256="1r7y10g2vriy360f7j8agmjw5sgzm2vr2dypj8v78ssklb6apd08"; depends=[ape Biostrings bold DECIPHER]; broken = true; }; PhyloMeasures = derive2 { name="PhyloMeasures"; version="2.1"; sha256="01axs78s10y1bkx8dbs9vvnphdzik7hpibkwyib1x9mznmyg90hr"; depends=[ape]; broken = true; }; PivotalR = derive2 { name="PivotalR"; version="0.1.18.5"; sha256="1xcr7769d9jixq0lbc89jqzzxnnzxb8gjlws2l6cjm40hcid2yc9"; depends=[Matrix semver]; broken = true; }; Plasmode = derive2 { name="Plasmode"; version="0.1.0"; sha256="1qcni9zdckhsnw616jn7rdfd09kbl5wd4hljdja0w73jz1wd1z14"; depends=[arm epiDisplay foreign gbm glm2 lattice latticeExtra lme4 MASS Matrix mgcv nlme nnet RColorBrewer survey survival twang xtable]; broken = true; }; + Platypus = derive2 { name="Platypus"; version="3.5.0"; sha256="03ymh011wyhlc4pisnrac1nijfw08gc793dj2pzwxzkcwk7g3q99"; depends=[Biostrings cowplot dplyr ggplot2 ggtree jsonlite knitr magrittr Matrix plyr reshape2 seqinr Seurat SeuratObject stringr tibble tidyr useful]; broken = true; }; PlotRegionHighlighter = derive2 { name="PlotRegionHighlighter"; version="1.0"; sha256="0n1nkfr3sdaq6f5p9kgx4slrsvhpdbax3rinrkfkb1vnjj4swj77"; depends=[]; broken = true; }; PoissonSeq = derive2 { name="PoissonSeq"; version="1.1.2"; sha256="1hhx0gv06cp6hm6h36mqy411qn9x15y45crpzbyf8crfs85c6gbg"; depends=[combinat]; broken = true; }; PolygonSoup = derive2 { name="PolygonSoup"; version="1.0.1"; sha256="1b9hwgfcac8jrr8na5g2n779hhm24cy7q4xr3kz9nlr8sp5zymb8"; depends=[BH data_table gmp Rcpp RcppCGAL RcppEigen rgl]; broken = true; }; @@ -21294,6 +21643,7 @@ in with self; { QCAfalsePositive = derive2 { name="QCAfalsePositive"; version="1.1.1"; sha256="03qzb6vdnbri52gfx3laz14988p2swdv9m8i5z7gpsv3f3bjrxbp"; depends=[]; broken = true; }; QPmin = derive2 { name="QPmin"; version="0.5-1"; sha256="1hfvbi2qfynnkg2pmr7qsw75bmijwglnxchbzxcbikm5yw3sd2mz"; depends=[Matrix]; broken = true; }; QQperm = derive2 { name="QQperm"; version="1.0.1"; sha256="06xhv54zgnx8i22j23a0dqxhh7my416idpkkwq93qd1rdzgamzc8"; depends=[]; broken = true; }; + Qardl = derive2 { name="Qardl"; version="0.1.1"; sha256="1sb6xp8hm4rh30dfnw9n5x10hr3sd9p0cv98fr31kdaiqji0vglw"; depends=[dplyr MASS Matrix pbapply quantreg]; broken = true; }; QuACN = derive2 { name="QuACN"; version="1.8.0"; sha256="1597blp8gqc5djvbgpfzi8wamvy0x50wh5amxj9cy99qa0jlglxi"; depends=[combinat graph igraph RBGL]; broken = true; }; QualInt = derive2 { name="QualInt"; version="1.0.0"; sha256="1ms96m3nz54848gm9kdcydnk5kn2i8p1rgl2dwn7cqcqblfvsr4j"; depends=[ggplot2 survival]; broken = true; }; QuantTools = derive2 { name="QuantTools"; version="0.5.7.1"; sha256="1nkf7ihzfwgz7svh1jybgcvqwbim2dqzi00l4m9pma463va4q19d"; depends=[data_table fasttime R6 Rcpp RCurl readxl]; broken = true; }; @@ -21321,6 +21671,7 @@ in with self; { RDIDQ = derive2 { name="RDIDQ"; version="1.0"; sha256="09gincmxv20srh4h82ld1ifwncaibic9b30i56zhy0w35353pxm2"; depends=[]; broken = true; }; RDSTK = derive2 { name="RDSTK"; version="1.1"; sha256="07vfhsyah8vpvgfxfnmp5py1pxf4vvfzy8jk7zp1x2gl6dz2g7hq"; depends=[plyr RCurl rjson]; broken = true; }; RDataCanvas = derive2 { name="RDataCanvas"; version="0.1"; sha256="1aw19lmdphxwva5cs3f4fb8hllirzfkk48nqdgrarz32l11y5z5j"; depends=[jsonlite]; broken = true; }; + RDocumentation = derive2 { name="RDocumentation"; version="0.8.2"; sha256="0qdn3c5xbjyrhk56wfch50xpyyfd4f79hs0v00cqk9iwsnjlwmb5"; depends=[httr proto rjson]; broken = true; }; REREFACT = derive2 { name="REREFACT"; version="1.0"; sha256="0nggva4qfqlcs58df3sgiigw0z75l5kg8c1yh0k5qsvjnhiq19vn"; depends=[combinat gdata Matrix psych]; broken = true; }; REST = derive2 { name="REST"; version="1.0.1"; sha256="16v89z7p9qkg7bsypf9vkrnbmb2n7gw3fqnfzbyxwj496wzxdv1x"; depends=[Rcmdr]; broken = true; }; RFGLS = derive2 { name="RFGLS"; version="1.1"; sha256="13ggxj74h5b2hfhjyc50ndxznkvlg18j80m78hkzwh25d3948fsk"; depends=[bdsmatrix Matrix]; broken = true; }; @@ -21334,6 +21685,7 @@ in with self; { RHT = derive2 { name="RHT"; version="1.0"; sha256="1gxf8nhj3y92h8al7l3fxa45wc568kb3cykrbdjlsy2zjacf7fcc"; depends=[]; broken = true; }; RKEELjars = derive2 { name="RKEELjars"; version="1.0.20"; sha256="1wsxn9l7xdmm9q3z9lbbkdcnwsfmcrayg08m4mkbwynii5z9x548"; depends=[downloader]; broken = true; }; RM2 = derive2 { name="RM2"; version="0.0"; sha256="1v57nhwg8jrpv4zi22fhrphw0p0haynq13pg9k992sb0c72dx70a"; depends=[msm]; broken = true; }; + RNAsmc = derive2 { name="RNAsmc"; version="0.8.0"; sha256="0lssw4qwcsdwcd3chkb1kslqh7yn25prl1npp1464nvmvz9yqdwm"; depends=[circlize RRNA]; broken = true; }; RNAstructureModuleMiner = derive2 { name="RNAstructureModuleMiner"; version="0.1.0"; sha256="026r1h4z1jdfww0ay9iixa77ax6b19pgp589bbn77xg1vwjjlbsk"; depends=[RRNA]; broken = true; }; RNRCS = derive2 { name="RNRCS"; version="0.2.5"; sha256="19q78l8mh4701vqvr36vqc87n39s5ivzhiy5lvnxbd4dgibk1jr2"; depends=[ggplot2 magrittr rvest xml2]; broken = true; }; RNaviCell = derive2 { name="RNaviCell"; version="0.2"; sha256="15k8hkagn5520fy7x672fy329s2v7l0x44s44f6v7ql9mmg4b635"; depends=[RCurl RJSONIO]; broken = true; }; @@ -21352,6 +21704,7 @@ in with self; { RSarules = derive2 { name="RSarules"; version="1.0"; sha256="0lrql4q45hyhqbix86ixl12mknnjbz3137gx2zkvqpz91bsk145j"; depends=[arules Matrix]; broken = true; }; RSeed = derive2 { name="RSeed"; version="0.1.60"; sha256="0rvb6w4z5c2wcdgx5w6vv7c8il8d0096pgv3fyvw21ag25z605jc"; depends=[graph RBGL sybil]; broken = true; }; RSiteCatalyst = derive2 { name="RSiteCatalyst"; version="1.4.16"; sha256="1plcmxj6sahdy3vvcmxry8cbq1j23bqzhnhn593bkwmzczka24cy"; depends=[base64enc digest httr jsonlite plyr stringr]; broken = true; }; + RStorm = derive2 { name="RStorm"; version="1.0"; sha256="1n2kiy9b8w6rnv2zmzbl22grwibf619hadf2cjq1ch7rmbr7qb65"; depends=[plyr]; broken = true; }; RStripe = derive2 { name="RStripe"; version="0.1"; sha256="0vp7zsd5xm8rf7196fivb76kkmxfx3gawxlyjhn9xqv92vawivra"; depends=[httr jsonlite RCurl]; broken = true; }; RSurvey = derive2 { name="RSurvey"; version="0.9.3"; sha256="0yk969jdvpgv01zbmk4zyxcmrbdizh37bddj1k128ndyf191z37x"; depends=[colorspace inlmisc MBA raster rgdal rgeos sp]; broken = true; }; RSwissMaps = derive2 { name="RSwissMaps"; version="0.1.0.1"; sha256="16sdd0115793yj74i9m64yfxxn3gkk4nvb0qk2w8j7jjbqhflis0"; depends=[downloader dplyr ggplot2]; broken = true; }; @@ -21380,7 +21733,9 @@ in with self; { Rcgmin = derive2 { name="Rcgmin"; version="2022-4.30"; sha256="04dr5w8ss004fk0w814x4hb78i7l3h1q5r00pjps43cpzgkvi116"; depends=[optextras]; broken = true; }; RcmdrPlugin_FuzzyClust = derive2 { name="RcmdrPlugin.FuzzyClust"; version="1.1"; sha256="1lg6k3h4n45s6wjkl3ycwfngfr2i6mkhirifhbazsvv297bg0iba"; depends=[clue doParallel foreach ggplot2 iterators MASS Rcmdr reshape2 tcltk2 tkrplot]; broken = true; }; RcmdrPlugin_IPSUR = derive2 { name="RcmdrPlugin.IPSUR"; version="0.2-1.1"; sha256="0dbdsxdxhxm79cq7hi0rh8qphan73521lmivcnb4ca8g6ha2y32v"; depends=[Rcmdr]; broken = true; }; + RcmdrPlugin_SCDA = derive2 { name="RcmdrPlugin.SCDA"; version="1.2.0"; sha256="1yg2b5vcnf956w04phxg15a4my9hvkbc27nzyn30b2wn47ysxghj"; depends=[Rcmdr SCMA SCRT SCVA]; broken = true; }; RcmdrPlugin_SLC = derive2 { name="RcmdrPlugin.SLC"; version="0.2"; sha256="1nwpzmgfla1y05dxf81w0wmvvmvcq5jn5k8phlq30920ia7ybs8g"; depends=[Rcmdr SLC]; broken = true; }; + RcmdrPlugin_coin = derive2 { name="RcmdrPlugin.coin"; version="1.0-23"; sha256="1xl077cvabsbzhq3hn4yyc500645lbmyvdnvx2m9rcpwvyghlzvf"; depends=[coin multcomp Rcmdr survival]; broken = true; }; RcmdrPlugin_lfstat = derive2 { name="RcmdrPlugin.lfstat"; version="0.8.3"; sha256="1rcr43dqyb9zw9av3awkz0640vmvhxrafal5brnhqnpg4hfbpma3"; depends=[lfstat Rcmdr]; broken = true; }; RcmdrPlugin_plotByGroup = derive2 { name="RcmdrPlugin.plotByGroup"; version="0.1-0"; sha256="10wc7lnihsrldsynq2s0syr1aqmvfnj9rhgwh1nkk7jlrwcgj0z6"; depends=[lattice Rcmdr]; broken = true; }; RcmdrPlugin_pointG = derive2 { name="RcmdrPlugin.pointG"; version="0.6.6"; sha256="0sc3akbpdys353va05b40g3rq8qihw0pmhvv0kckkhsgrbr8mc07"; depends=[Rcmdr RColorBrewer]; broken = true; }; @@ -21405,7 +21760,6 @@ in with self; { Reliability = derive2 { name="Reliability"; version="0.0-2"; sha256="12zsicgbjqih3grbs62pw37x8wlkmnyc7g0yz6bqnfb4ym2yb7fg"; depends=[]; broken = true; }; ReorderCluster = derive2 { name="ReorderCluster"; version="2.0"; sha256="0zq143xvv2br7016f9b1501ymcpkjqm3al1dn5qfm21axyi2p1iq"; depends=[gplots gtools Rcpp]; broken = true; }; Replication = derive2 { name="Replication"; version="0.1.2"; sha256="1za7zcdaf839xf8hxy4rcrr1p80n6a3ywb2bsl3wikwa0pxdvvbh"; depends=[blavaan lavaan MASS mice quadprog rjags runjags]; broken = true; }; - Rfmtool = derive2 { name="Rfmtool"; version="4.1.10"; sha256="150y9xbnwhmazfd7az283pkyb02sfzv6y7f6fjwixx4cqv4bjzqf"; depends=[]; broken = true; }; Rga4gh = derive2 { name="Rga4gh"; version="0.1.1"; sha256="0h5y722blkkwn6ask6vjnhl22v9l6511chdm50ig6xcs5dvjam2m"; depends=[httr jsonlite]; broken = true; }; Rhpc = derive2 { name="Rhpc"; version="0.21-247"; sha256="0r4zikqzkcyyvywxq1s8jcq6h559mxilkmzpnl79781hh537jvii"; depends=[]; broken = true; }; RichR = derive2 { name="RichR"; version="1.0.0"; sha256="0z0ri90jqdmw0vwxd1b4wr9if5cgm1gqpf6g9p1fdvncf4sdi9by"; depends=[magrittr metap plyr reshape2]; broken = true; }; @@ -21428,7 +21782,6 @@ in with self; { Rrdrand = derive2 { name="Rrdrand"; version="0.1-16"; sha256="0j9yyvq8r1cgwj3kw1ak6hyazr67f2q0c1m651wdm0wcvm1ajx7f"; depends=[]; broken = true; }; RstoxData = derive2 { name="RstoxData"; version="1.2.1"; sha256="0xfznv0nl7xymlxbd7g0lbxqw1zcyc9mm4mx0nwpw896vz7dvyvw"; depends=[data_table Rcpp stringi units xml2 xslt]; broken = true; }; RtD3 = derive2 { name="RtD3"; version="0.0.1"; sha256="0zbm9pf1z8xl99aj64xy8q3hly98c2rzy34fzkbjyndysvxf9032"; depends=[data_table geojsonsf htmlwidgets jsonlite purrr]; broken = true; }; - Rtapas = derive2 { name="Rtapas"; version="1.1"; sha256="16mlmml7d381zxfqjfcnk77l5ic6dp890a74jb8va4yi32cb88yw"; depends=[ape distory GiniWegNeg paco parallelly phytools stringr vegan]; broken = true; }; RtutoR = derive2 { name="RtutoR"; version="1.2"; sha256="19wmi30b5i6zj673d76gxl6j0k3ppfyl5fqrcs0dwmmadrrvbajq"; depends=[colourpicker devtools dplyr DT FSelector ggplot2 ggthemes officer plotly rlang rmarkdown shiny shinyBS shinydashboard shinyjs tidyr]; broken = true; }; Runiversal = derive2 { name="Runiversal"; version="1.0.2"; sha256="0667mspsjydmxi848c6wsf14gz72bmdj9b3lilma92b7fhqnv7ai"; depends=[]; broken = true; }; Rvmmin = derive2 { name="Rvmmin"; version="2018-4.17.1"; sha256="0kl1h4mlvb1bngb40r3dhrjkpnh3lsqddis65hbjzm2pzz20l02m"; depends=[optextras]; broken = true; }; @@ -21440,6 +21793,7 @@ in with self; { S2sls = derive2 { name="S2sls"; version="0.1"; sha256="0qq1rff2cdgrm5rj69jxgrl71i0wmzyn424fdvcg02zdv9ggqhd3"; depends=[spanel]; broken = true; }; SACOBRA = derive2 { name="SACOBRA"; version="1.2"; sha256="1v45l56vifkg3v2bfhk3kfg4fn0dfvrjcgy13zzymm8blr7vazi5"; depends=[mgcv R6 testit]; broken = true; }; SAEforest = derive2 { name="SAEforest"; version="1.0.0"; sha256="135rjszhmyjadcysyc4inymap1n6irh7bydizc5aadd89805b0il"; depends=[caret dplyr ggplot2 haven ineq lme4 maptools pbapply pdp ranger reshape2 vip]; broken = true; }; + SAMM = derive2 { name="SAMM"; version="1.1.1"; sha256="175jk3s9w68ccw1h019380lp9cajfsy3zigcnplp87pcn3qg7x2i"; depends=[Rcpp RcppArmadillo]; broken = true; }; SAMURAI = derive2 { name="SAMURAI"; version="1.2.1"; sha256="02fipbjcsbp2b2957x6183z20icv1yly2pd1747nyww9bmpa7ycm"; depends=[metafor]; broken = true; }; SASPECT = derive2 { name="SASPECT"; version="0.1-1"; sha256="1d3yqxg76h9y485pl5mvlx6ls1076f80b320yvx4zxmqq9yxmaba"; depends=[]; broken = true; }; SASxport = derive2 { name="SASxport"; version="1.7.0"; sha256="1na94lxrn8kbhxpiflg14nkdx13rjq9bvvqbxyxh1mq0q7vz7a2l"; depends=[Hmisc stringi]; broken = true; }; @@ -21447,11 +21801,9 @@ in with self; { SBRect = derive2 { name="SBRect"; version="0.26"; sha256="16g0ciy9q9irypsl8x36i0lavl41j3af13r2si0by8q6wj56pxi4"; depends=[rJava]; broken = true; }; SBSA = derive2 { name="SBSA"; version="0.2.3"; sha256="1v23lzzziyjlvgn5p2n1qcq2zv9hsyz2w15lbnfi5wvinxhlg8sc"; depends=[Rcpp RcppArmadillo]; broken = true; }; SCAT = derive2 { name="SCAT"; version="0.5.0"; sha256="16dh4l5r8b49n68s571npmk14dnnx6y0np7lzvalg61z31zlya29"; depends=[]; broken = true; }; - SCCS = derive2 { name="SCCS"; version="1.6"; sha256="03737abfpg4bpbmgxryls9vfhhmx3kw02kw36y3rd3pnn2mcfd4v"; depends=[corpcor fda gnm R_methodsS3 survival]; broken = true; }; SCORER2 = derive2 { name="SCORER2"; version="0.99.0"; sha256="1a28wga69ip9s98ch2dqgl0qkwa3w6frmaqcvhclc360ik813mxq"; depends=[]; broken = true; }; SCPME = derive2 { name="SCPME"; version="1.0"; sha256="0yhsaaa349wbrswcvp7w8c52wzp7rs3528rs4wqa8b3r3fh983mh"; depends=[doParallel dplyr foreach ggplot2 Rcpp RcppArmadillo RcppProgress]; broken = true; }; SCRSELECT = derive2 { name="SCRSELECT"; version="1.3-3"; sha256="118vwnd5gggvdhq7fbs0553l84vh5mhiag41q4svprd7p0pqd9hd"; depends=[mvtnorm]; broken = true; }; - SCtools = derive2 { name="SCtools"; version="0.3.2.1"; sha256="0pw0kpqv4hzskfigl7ch509jj2cmp674l9ms2ivbx3sxq9l0hhj1"; depends=[cvTools dplyr furrr future ggplot2 magrittr purrr stringr Synth]; broken = true; }; SDALGCP = derive2 { name="SDALGCP"; version="0.4.0"; sha256="0az11v9dj3pwl5q2kr2apac06b5hg0msi5r17qrcik1d65k18hm0"; depends=[geoR maptools mapview Matrix pdist PrevMap progress raster sp spacetime spatstat spatstat_geom splancs]; broken = true; }; SDD = derive2 { name="SDD"; version="1.2"; sha256="0wzgm1hgjv5s00bpd7j387qbvn5zvyrrd5fr2rgyll4cw9p4sd33"; depends=[Hmisc rgl rpanel sm tseries]; broken = true; }; SDDE = derive2 { name="SDDE"; version="1.0.1"; sha256="14vql1bypn409w9xcx1jdzff6apiagcz2wng3y24h3mk7yjv9bzy"; depends=[doParallel foreach igraph iterators]; broken = true; }; @@ -21484,9 +21836,10 @@ in with self; { SPIAssay = derive2 { name="SPIAssay"; version="1.1.0"; sha256="0y02122lj4v95g62w84jmdjdazfz3rch133aid5sgakj2kv68cvh"; depends=[]; broken = true; }; SPIn = derive2 { name="SPIn"; version="1.1"; sha256="109xxrg7bsmmfd6ik85kxrw2qclxbh5ipsh5mmrdl4hki3hnyp2s"; depends=[quadprog]; broken = true; }; SPODT = derive2 { name="SPODT"; version="0.9-1"; sha256="01yq429a4s63855bwpn2mqjj2k3cz4187kfpi7n7qqdpdvmxz109"; depends=[rgdal sp tree]; broken = true; }; + SPOT = derive2 { name="SPOT"; version="2.11.14"; sha256="15hgf0mx48z7yxb1zrhilc0lradcxak7wrbibq1r8yhxdf736zlr"; depends=[DEoptim ggplot2 glmnet laGP MASS nloptr plgp plotly randomForest ranger rgenoud rpart rsm]; broken = true; }; + SPOTMisc = derive2 { name="SPOTMisc"; version="1.19.52"; sha256="0l3css9hw75r76g2iykf2iih8lqnpzqqv2l734zix3agjr5cmmlh"; depends=[callr dplyr GGally ggplot2 keras magrittr Metrics mlr plotly RColorBrewer reticulate rlang rpart_plot rsample sensitivity smoof SPOT tensorflow tfdatasets]; broken = true; }; SPQR = derive2 { name="SPQR"; version="0.1.0"; sha256="1hsz9pbn428vbiwq5chs9j9hpsrsk1aqzjhgqwc5dybqi4x4qb8v"; depends=[coro ggplot2 interp loo progress progressr RColorBrewer Rcpp RcppArmadillo splines2 torch yaImpute]; broken = true; }; SPRT = derive2 { name="SPRT"; version="1.0"; sha256="1r4pfqh8k5avi8qgpk5x1cy8lmkn341yvjvd2r7wqwb3mr242r0v"; depends=[]; broken = true; }; - SPUTNIK = derive2 { name="SPUTNIK"; version="1.4.1"; sha256="0446qh43q09l7kvcgsp4gkp7p9v9448xx0xwngxgghnnmwh8fa4p"; depends=[doSNOW e1071 edgeR foreach ggplot2 imager infotheo irlba reshape spatstat_explore spatstat_geom viridis]; broken = true; }; SQB = derive2 { name="SQB"; version="0.4"; sha256="12ii8xlwd2r77bj76j7l43898ras25z3plhhv106jaklhpcnk23m"; depends=[caret nnet pls rpart]; broken = true; }; SQDA = derive2 { name="SQDA"; version="1.0"; sha256="0nfimk625wb64010r5r7hzr64jfwgc6rbn13wvrpn0jgayji87h6"; depends=[limma mvtnorm PDSCE]; broken = true; }; SSDL = derive2 { name="SSDL"; version="1.1"; sha256="0m05m00qsjyc69kix124z6nrplqv1yaaag7qxpiizbn664h9hmjb"; depends=[bigstatsr chickn doParallel doRNG foreach glmnet pracma Rcpp RcppArmadillo RcppParallel Rdpack reshape2 rmio]; broken = true; }; @@ -21517,7 +21870,9 @@ in with self; { SimRAD = derive2 { name="SimRAD"; version="0.96"; sha256="0ivvd3k04v1akbblxcjhlyc315z3ig7wjs0g3b37lvlfp54ppbrg"; depends=[Biostrings ShortRead zlibbioc]; broken = true; }; SimRVPedigree = derive2 { name="SimRVPedigree"; version="0.4.4"; sha256="0z7wwwl814bwaijkmg9wcdj5xisiamc9yqypmk0hzj950569aj8p"; depends=[dplyr kinship2]; broken = true; }; SimSCRPiecewise = derive2 { name="SimSCRPiecewise"; version="0.1.1"; sha256="0mhlx9m5db8a40wf275qh59345676m8bpjjmyx1v22f6m9p3b2n4"; depends=[]; broken = true; }; + SimilaR = derive2 { name="SimilaR"; version="1.0.8"; sha256="1wlxscl94r3gxwsc9yw0y4z5nj28nxilijp0pbzv4z2n4aqc7vy6"; depends=[BH Rcpp stringi]; broken = true; }; SimpleTable = derive2 { name="SimpleTable"; version="0.1-2"; sha256="1rkybrp7zlb7cj37799npss1ldic0yf519q5l7a6ikal4yl1afyb"; depends=[hdrcde locfit MCMCpack]; broken = true; }; + SimplifyStats = derive2 { name="SimplifyStats"; version="2.0.4"; sha256="08775g6fdx09y8pkfq4k8zxbxpwah7yqq5cg30lmxl7zrpmza5hv"; depends=[assertthat broom dplyr moments tibble]; broken = true; }; Simpsons = derive2 { name="Simpsons"; version="0.1.0"; sha256="1pm6wga1yxc35zgz72plzq23d3l4bbzfdvhszdxmkn1pkk64h8ms"; depends=[mclust]; broken = true; }; SinIW = derive2 { name="SinIW"; version="0.2"; sha256="1z7rcjy0i09a9hjpjj1x8i46lv042l20lvb6b0pnsky2sx3v78pd"; depends=[fdrtool pracma]; broken = true; }; SiteAdapt = derive2 { name="SiteAdapt"; version="1.1.0"; sha256="1k79j29d92a8m578xj61iavljikksdmjr2vlzwmdvxpa6rp1i2ff"; depends=[ggplot2 ggpubr glmulti hyfo RColorBrewer solaR]; broken = true; }; @@ -21525,7 +21880,6 @@ in with self; { SkeweDF = derive2 { name="SkeweDF"; version="0.1.0"; sha256="11i6zbjhkcrr6g848sms21l1ixk401vd50cia74j78d4nvl8d8zc"; depends=[dplyr matrixStats optimr purrr Rcpp stringr zipfR]; broken = true; }; Sky = derive2 { name="Sky"; version="1.0"; sha256="02vjdggvanzsjx7ihxskapp5d5dlyalj02122wmarj8qf1ha1i2m"; depends=[EBImage]; broken = true; }; SmithWilsonYieldCurve = derive2 { name="SmithWilsonYieldCurve"; version="1.0.1"; sha256="0qvhd1dn2wm9gzyp6k7iq057xqpkngkb4cfmvmjqmf0vhysp371w"; depends=[]; broken = true; }; - SmoothHazard = derive2 { name="SmoothHazard"; version="2023.06.27"; sha256="1jigxihw7mw0ivbarjic5qjx4ky450ys8db4j0i5i4z6sv9nfqix"; depends=[lava mvtnorm prodlim]; broken = true; }; SoDA = derive2 { name="SoDA"; version="1.0-6.1"; sha256="0d3jb1dsg1q06c08ldmhj0q2sb1pc0g08rfal29ddng3b4qm1lhh"; depends=[]; broken = true; }; SocialNetworks = derive2 { name="SocialNetworks"; version="1.1"; sha256="0d868xka6d35i17r28cvm0ya971xk6y1kycsfff0279w27cjd9x0"; depends=[Rcpp]; broken = true; }; SocialPosition = derive2 { name="SocialPosition"; version="1.0.1"; sha256="1rrrjlq6czzhzipvkisbq024ca22v2vzx7wa4ddr9j7hnyyzzpic"; depends=[]; broken = true; }; @@ -21535,7 +21889,6 @@ in with self; { SourceSet = derive2 { name="SourceSet"; version="0.1.5"; sha256="17dbxdqm9jkhyip6xdwrxsqqyncs5skclbi9drjbdcw745p7c6lh"; depends=[graph gRbase gtools igraph plyr progress reshape2 scales]; broken = true; }; SpNetPrep = derive2 { name="SpNetPrep"; version="1.2"; sha256="1jhjyrb0k5z21vn9bc444rxax3lxsyzyhggrcy7zl9ps7p4ra990"; depends=[leaflet maptools prodlim raster rgdal shiny shinythemes sp spatstat spatstat_core spatstat_geom spatstat_linnet]; broken = true; }; SpaCCr = derive2 { name="SpaCCr"; version="0.1.0"; sha256="0qm1fr6nnax3i1i77fi73x1z8db557avh6kivs0nskb1dfj8ri4m"; depends=[abind dplyr ggplot2 Rcpp RcppArmadillo tidyr]; broken = true; }; - SpaDES = derive2 { name="SpaDES"; version="2.0.9"; sha256="11acb05b957qwbii701y1b4lvcnvmiixkrlmqkccc8n9icqq107n"; depends=[quickPlot reproducible SpaDES_core SpaDES_tools]; broken = true; }; SpaDES_addins = derive2 { name="SpaDES.addins"; version="0.1.4"; sha256="0ly411y95rcm30slaj02vn7clmyq3dvinzg1x40vbsqzcjjg1h6l"; depends=[magrittr miniUI reproducible rstudioapi shiny SpaDES_core stringi]; broken = true; }; SpaTimeClus = derive2 { name="SpaTimeClus"; version="1.0.1"; sha256="0w2jxaz2kxfksyss5vy6xy499p8jg8lpqlykwgm2srp1fd2l3rs9"; depends=[Rcpp RcppArmadillo]; broken = true; }; SparseFactorAnalysis = derive2 { name="SparseFactorAnalysis"; version="1.0"; sha256="0lgfvydxb86r5hks1mf0p0yhgpx8s8fbkc3q6dimc728rw26qcv5"; depends=[directlabels ggplot2 MASS proto Rcpp RcppArmadillo truncnorm VGAM]; broken = true; }; @@ -21544,6 +21897,7 @@ in with self; { SpatialFloor = derive2 { name="SpatialFloor"; version="1.1.0"; sha256="07mwgcvkkq478l6wxvrdjs9d578x0kgs5xy86lgy5my0xqfcv6y8"; depends=[blocksdesign fields reshape2 taRifx]; broken = true; }; SphericalK = derive2 { name="SphericalK"; version="1.2"; sha256="18py4ylm10s75pihjvcy7w948379zy9l9azriw7g7pyp7px29wda"; depends=[]; broken = true; }; SportsAnalytics = derive2 { name="SportsAnalytics"; version="0.2"; sha256="1vb080ak1mfvr6d0q9i3r8hd547ba80bavjdcri0gclqqcjf1ach"; depends=[]; broken = true; }; + SpotSampling = derive2 { name="SpotSampling"; version="0.1.0"; sha256="0s47dvigzkcl9ynrdiwrjzwap18dpkb29jngi8ddvf9m4xywj4al"; depends=[BalancedSampling MASS pracma sampling WaveSampling]; broken = true; }; StVAR = derive2 { name="StVAR"; version="1.1"; sha256="0wz5f5i9927fs1s8yczwqs022k912220m28l1sv5f0r081iv656i"; depends=[ADGofTest matlab MCMCpack numDeriv]; broken = true; }; StandardizeText = derive2 { name="StandardizeText"; version="1.0"; sha256="0s267k2b109pcdiyd26gm4ag5afikrnnb55d3cs6g2fvzp744hfp"; depends=[]; broken = true; }; StatCharrms = derive2 { name="StatCharrms"; version="0.90.96"; sha256="1451aj1476qjpmxhpbgd8g55i7rp2msml64xsiy25h7x9g6d9w05"; depends=[cairoDevice car clinfun coxme gWidgets2 gWidgets2RGtk2 lattice multcomp nlme R2HTML RGtk2 RSCABS survival]; broken = true; }; @@ -21552,6 +21906,7 @@ in with self; { SteinerNet = derive2 { name="SteinerNet"; version="3.1.0"; sha256="03wr746dkwp8vg91y986q0xvgz1y9b5q25g0kig2sx6m75li3yif"; depends=[igraph]; broken = true; }; Stem = derive2 { name="Stem"; version="1.0"; sha256="1fr02mi5qyxbqavdh2hg8ggw4nfjh3vs7g0vh834h6y0v53l71r5"; depends=[MASS mvtnorm]; broken = true; }; StratifiedSampling = derive2 { name="StratifiedSampling"; version="0.4.1"; sha256="15gg1qc2znyba2y6kq8qq6wz69lq3kkpps0a3j9jdq8n67x65zkp"; depends=[MASS Matrix proxy Rcpp RcppArmadillo Rglpk sampling transport]; broken = true; }; + StructFDR = derive2 { name="StructFDR"; version="1.4"; sha256="1gxv2pgypbxgwii5d71zrhasfdj33wjw4jfa3frc4q28nbh8a2l8"; depends=[ape cluster dirmult matrixStats nlme]; broken = true; }; SubCultCon = derive2 { name="SubCultCon"; version="1.0"; sha256="08q6k4nsv3gl5qk87s87smdg047yc2a4i7kg0fp08i7q7h62jkvz"; depends=[]; broken = true; }; SubgrPlots = derive2 { name="SubgrPlots"; version="0.1.3"; sha256="1bi5zndkpgvyk563i0jdfrw73kkpa6zi3yx922dv90w6bdb9kvl2"; depends=[alluvial circlize colorspace diagram dplyr ggplot2 ggrepel gridBase gridExtra plyr polyclip scales shape sp survival survRM2 UpSetR VennDiagram]; broken = true; }; SubpathwayGMir = derive2 { name="SubpathwayGMir"; version="1.0"; sha256="1rw94idhbnaszr2xv1wgnjcxlnxkml912pvmqh2a1nqpwca5mscy"; depends=[igraph XML]; broken = true; }; @@ -21561,7 +21916,6 @@ in with self; { SurfaceReconstruction = derive2 { name="SurfaceReconstruction"; version="0.1.0"; sha256="0xgzr0hl6imgyq0ljyqipjkdjbyc0pz35z1k20b5gbz0b6rfz4c9"; depends=[BH Rcpp RcppCGAL RcppEigen rgl Rvcg]; broken = true; }; SurvGSD = derive2 { name="SurvGSD"; version="1.0.0"; sha256="0aa5zaf9akkqkxs8iqwnm93sfwakhhhs3qfafbk0vrwmb5yvzzm1"; depends=[flexsurv ldbounds mnormt]; broken = true; }; Survgini = derive2 { name="Survgini"; version="1.0"; sha256="1gxkdv2j1njbgnwb52vyhz7p2lrcg3hp6sry3kyhp4wkvf6gnhxi"; depends=[survival]; broken = true; }; - SurviMChd = derive2 { name="SurviMChd"; version="0.1.1"; sha256="1sj3i950nmam3r70as85kdx6nd88iidb5jpiz2a5a39i5lb7mgf7"; depends=[dplyr ICBayes icenReg R2jags Rdpack readr rjags rlang survival tidyverse]; broken = true; }; SurvivalPath = derive2 { name="SurvivalPath"; version="1.3.2"; sha256="17glrkz63ms76cmg7lfz0nay131ngwxigwfs0rzgfjna9gy06dgi"; depends=[dplyr ggplot2 ggtree Hmisc rms survival survivalROC survminer treeio]; broken = true; }; SwarmSVM = derive2 { name="SwarmSVM"; version="0.1-7"; sha256="03q9sv51lvf64gdzmcb8sskghqib3afy5hx9nwxba1sk2cziinpb"; depends=[BBmisc checkmate e1071 kernlab LiblineaR Matrix SparseM]; broken = true; }; SyNet = derive2 { name="SyNet"; version="2.0"; sha256="0mb9dscddkvmkf7l3bbcy4dlfmrvvy588vxdqy5dr783bpa5dkiw"; depends=[tkrplot]; broken = true; }; @@ -21574,6 +21928,7 @@ in with self; { TFX = derive2 { name="TFX"; version="0.1.0"; sha256="0xrjdbvg0ng4i0s8ql1pfyma10x4n045spilkb05750677r5j44p"; depends=[XML]; broken = true; }; TInPosition = derive2 { name="TInPosition"; version="0.13.6.1"; sha256="1c0h9zg71whmsjn5rnzv5kdrabl9kqrq627caznvrpa74c7pjks9"; depends=[ExPosition InPosition prettyGraphs TExPosition]; broken = true; }; TLBC = derive2 { name="TLBC"; version="1.0"; sha256="08w187akbhfbz6nrrf7avf02lrhgj7bbrjmim9gkh4wlbjhzvw67"; depends=[caret HMM randomForest signal stringr]; broken = true; }; + TMTI = derive2 { name="TMTI"; version="1.0.1"; sha256="080k4lmwspxi6salv4zq9lipwcah3zr6vfc0lrll1z8gynk8arq9"; depends=[Rcpp]; broken = true; }; TREXr = derive2 { name="TREXr"; version="1.0.0"; sha256="1dkp3l5cix06bhidmr9npd2f2my9hcm0qmdar0hwkcm1zrl1ha4w"; depends=[boot chron doParallel doSNOW dplyr foreach lhs lubridate magrittr msm randtoolbox sensitivity solaR tibble zoo]; broken = true; }; TSMCP = derive2 { name="TSMCP"; version="1.0"; sha256="1wzi6wzd8l5bkm0qc1mfvj067xywm208xl6r87a4svcn1ydr4vl4"; depends=[lars plus]; broken = true; }; TSMining = derive2 { name="TSMining"; version="1.0"; sha256="1n32acagffiw31pr485ly3phx33zw7vj009bvw4lbqpixa1pszj2"; depends=[foreach ggplot2 plyr reshape2]; broken = true; }; @@ -21596,9 +21951,9 @@ in with self; { TauStar = derive2 { name="TauStar"; version="1.1.4"; sha256="06bb6570mqzfbjw2qp4bjl4a1bdpwsvcr0vw2y4l1x444m670ds1"; depends=[Rcpp RcppArmadillo]; broken = true; }; Taxonstand = derive2 { name="Taxonstand"; version="2.4"; sha256="0zph4618bwjfvx41ap9d2534kknbni216y90nmcvaniskw4ixm7d"; depends=[pbapply]; broken = true; }; Thinknum = derive2 { name="Thinknum"; version="1.3.0"; sha256="0j48vgr4wsc2chm95aprq0xm0dk720xk5zmiijxasg92sfp0va6n"; depends=[RCurl RJSONIO]; broken = true; }; + ThreeArmedTrials = derive2 { name="ThreeArmedTrials"; version="1.0-4"; sha256="1czlr94mgs99pzd1a80wqfjhrwrfsk8fvbbr37nwcixs0fw431yw"; depends=[MASS numDeriv]; broken = true; }; TickExec = derive2 { name="TickExec"; version="1.1"; sha256="0v0m0wi49yw0ply19vnirl2zwnk61sxalx24l8cadvkssgs13509"; depends=[]; broken = true; }; TiddlyWikiR = derive2 { name="TiddlyWikiR"; version="1.0.1"; sha256="0vwwjdmfc8c0y2gfa8gls1mzvp29y39c9sxryrgpk253jj9px1kr"; depends=[]; broken = true; }; - TidyConsultant = derive2 { name="TidyConsultant"; version="0.1.0"; sha256="1ipv0nx0xmba62c7qjgadpjsr850d9dl0z5zjkh1rj6kfxdgiis2"; depends=[autostats badger framecleaner pacman presenter tidybins validata]; broken = true; }; TileManager = derive2 { name="TileManager"; version="0.4.1"; sha256="0pcskdqxxm07j47bw1j4d3jqf64pk0jqwcp5379hnpi6kr7f5gvh"; depends=[APfun raster rgeos sp XML]; broken = true; }; TimeProjection = derive2 { name="TimeProjection"; version="0.2.0"; sha256="04yr4cg2khkw9n3y3qk0ni1327k4pxm09zz2xg8mpjdvgi4p9yi3"; depends=[lubridate Matrix timeDate]; broken = true; }; TimeSeries_OBeu = derive2 { name="TimeSeries.OBeu"; version="1.2.4"; sha256="0ihigrbdkfbqqjxqfx3y5q8ii8n60301s7190jr50a88l1xzgmh8"; depends=[forecast jsonlite locfit trend tseries]; broken = true; }; @@ -21614,7 +21969,9 @@ in with self; { TwoCop = derive2 { name="TwoCop"; version="1.0"; sha256="1ycxq8vbp68z82r2dfg2wkc9zk3bn33d94xay20g2p55lnzl2ifd"; depends=[]; broken = true; }; TwoRegression = derive2 { name="TwoRegression"; version="1.0.0"; sha256="0mpgdz7swrzabpf835pawlwvbzqajc329whcsxddwq4l6c71sb11"; depends=[dplyr ggplot2 gridExtra lubridate magrittr PAutilities pROC RcppRoll rlang tidyr]; broken = true; }; UMR = derive2 { name="UMR"; version="1.1.0"; sha256="05g2gk7bmhzyill6fgq396yk0yi7qz4mdcy3cfzzx5nyr11rc8a7"; depends=[decon distr trust]; broken = true; }; + UNCLES = derive2 { name="UNCLES"; version="2.0"; sha256="0c61sm09dh0yfrjrjjnizg7qrf8xgc1zdldwhjh64kq8k8g5wa69"; depends=[class kohonen pdist]; broken = true; }; UNF = derive2 { name="UNF"; version="2.0.8"; sha256="1gag7yqh5zs4azds0axlkpksymakw19s4n50pnhx7k6m9hgcbdgh"; depends=[base64enc digest]; broken = true; }; + UPMASK = derive2 { name="UPMASK"; version="1.2"; sha256="160rsb0nbndf61khcs3s8xv9nj7ln8zl6l11157ywdcjqd2q5qnq"; depends=[DBI dimRed loe MASS RSQLite]; broken = true; }; USAboundaries = derive2 { name="USAboundaries"; version="0.4.0"; sha256="0wwaywg01vz8hmwm58bnf86m8yqivi53bww5y3ycg891msnjwrgr"; depends=[]; broken = true; }; UScancer = derive2 { name="UScancer"; version="0.1-2"; sha256="0p1kxw1phqq598ljk3njznc9kmgscc8gmwdrvx1scba9rr6n61kl"; depends=[rgdal]; broken = true; }; UScensus2000cdp = derive2 { name="UScensus2000cdp"; version="0.03"; sha256="143hqnzdla3p31n422ddzaaa34wc6xnnhil4y53m4qydyg407700"; depends=[foreign maptools sp]; broken = true; }; @@ -21625,6 +21982,7 @@ in with self; { VARSEDIG = derive2 { name="VARSEDIG"; version="2.1"; sha256="1cxp80i5160c6kx666nl0gxs8ypfmkzxr2gqph5a9v6ibiq801sj"; depends=[]; broken = true; }; VARsignR = derive2 { name="VARsignR"; version="0.1.3"; sha256="09mnf9hvsi4wx1c81yq97mzggwk6s7nka7awrws63icjybqjmra9"; depends=[HI minqa mvnfast]; broken = true; }; VARtests = derive2 { name="VARtests"; version="2.0.5"; sha256="0gmm2qrrl4v5vx0nhiwq5brvanhybpb2q0zlf4dihramhjjbwyar"; depends=[Rcpp RcppArmadillo sn]; broken = true; }; + VHDClassification = derive2 { name="VHDClassification"; version="0.3"; sha256="1ij4h3gzxb9mm9q743kc3sg2q609mnqz6mhlrbim1wcjji2b7bv4"; depends=[e1071 lattice]; broken = true; }; VIF = derive2 { name="VIF"; version="1.0"; sha256="0yvg6ikrcs7mhg0pavhcywrfysv7ylvnhxpc5sam86dbp69flx9x"; depends=[]; broken = true; }; VIFCP = derive2 { name="VIFCP"; version="1.2"; sha256="0w41k25vss806m5vpwmmcfsmwaixmln0pliql3a6xlwsihha5i34"; depends=[]; broken = true; }; VNM = derive2 { name="VNM"; version="7.1"; sha256="19qglcibb7r6jjz0n0piklwfv3hi4jphd6vmyfbm0ccjjkmn5nin"; depends=[Rcpp]; broken = true; }; @@ -21643,16 +22001,17 @@ in with self; { WLinfer = derive2 { name="WLinfer"; version="1.2.0"; sha256="1d4x3w5mamwk7binjr45s62zd7lvxw3abadw22084p10kw7lwfk7"; depends=[bbmle boot cubature goftest LindleyR nleqslv pracma]; broken = true; }; WMDB = derive2 { name="WMDB"; version="1.0"; sha256="10wdjy3g2qg975yf1dhy09w9b8rs3w6iszhbzqx9igfqvi8isrr1"; depends=[]; broken = true; }; WPC = derive2 { name="WPC"; version="1.0"; sha256="0li502hwa4n945yfnilslyvl12ls66kazbfmxb4kkjbaf500mjp9"; depends=[msm survival]; broken = true; }; + WSGeometry = derive2 { name="WSGeometry"; version="1.2.1"; sha256="073cvvbhzx5nllrwfyz6bxvskmkm88i7wq93m2d0q60pzwzsxwzl"; depends=[expm imager lpSolve Matrix plot3D Rcpp RcppArmadillo RSpectra transport]; broken = true; }; WWR = derive2 { name="WWR"; version="1.2.2"; sha256="0ia1dd12r1l08s9nhgvk55jmqwv58jawm25gd2ni6wpa3mcmq02g"; depends=[inline]; broken = true; }; Watersheds = derive2 { name="Watersheds"; version="1.1"; sha256="1gn52nl0rr29pqq94gjasc4fi1kjxlrpjdkgm2x56j5jbd162drk"; depends=[lattice maptools rgeos sp splancs]; broken = true; }; WikipediaR = derive2 { name="WikipediaR"; version="1.1"; sha256="0fxk247jb82g0f3nmwraa4kvdpjxy5s4dcyzj9vkjw2lq8by3l0h"; depends=[httr XML]; broken = true; }; WilcoxCV = derive2 { name="WilcoxCV"; version="1.0-2"; sha256="1kbb7ikgnlxybmvqrbn4cd8xnqrkwipk4xd6yja1xsi39a109xzl"; depends=[]; broken = true; }; XHWE = derive2 { name="XHWE"; version="1.0"; sha256="1ca8y9q3623d0vn91g62nrqf3pkbcbkpclmddw5byd37sdrgsi5l"; depends=[]; broken = true; }; - XML2R = derive2 { name="XML2R"; version="0.0.6"; sha256="0azfh950r2b7ck3n1vzk3mdll7zy844nx3mbk676jxnj8gg7nxk5"; depends=[plyr RCurl XML]; broken = true; }; XPolaris = derive2 { name="XPolaris"; version="1.0.2"; sha256="1l05svscgkv9bzkawi2kp9zhchrhxxma3271b828j34pkrnnmq5m"; depends=[curl dplyr ggplot2 httr magrittr purrr raster sf tidyr]; broken = true; }; Xmisc = derive2 { name="Xmisc"; version="0.2.1"; sha256="11gwlcyxhz1p50m68cnqrxmisdk99v8vrsbvyr7k67f0kvsznzs1"; depends=[]; broken = true; }; Yamm = derive2 { name="Yamm"; version="1.3.2"; sha256="1x0214nw4hk1xs2qgz532ff1fydkwkq449l1zdbv088rhxs8c2ch"; depends=[depth interp robustX]; broken = true; }; ZIBBSeqDiscovery = derive2 { name="ZIBBSeqDiscovery"; version="1.0"; sha256="12g9rga9z6318ni6x6q9hdqlgl93y2xn8vf3gc6sm97fz8pliswx"; depends=[mcc]; broken = true; }; + ZIBseq = derive2 { name="ZIBseq"; version="1.2"; sha256="13rjy4jl9wil6hhpra4qmdis0iyqxchzsf9l7q6r0dz1f7dpd2nq"; depends=[gamlss gamlss_dist nlme]; broken = true; }; Zelig = derive2 { name="Zelig"; version="5.1.7"; sha256="1x1zcmlhbbzxbb0y91ynz50nfhpki913lnmhcpmlds7drcbbirnk"; depends=[AER Amelia coda dplyr Formula geepack jsonlite MASS MatchIt maxLik MCMCpack quantreg sandwich survey survival VGAM]; broken = true; }; ZipRadius = derive2 { name="ZipRadius"; version="1.0.1"; sha256="00q4a2bsajs5ns4vdm289iaj9mczxjn3ssyrnmg2z4wicr2ljizv"; depends=[dplyr geosphere ggplot2 magrittr rlang testthat]; broken = true; }; aCRM = derive2 { name="aCRM"; version="0.1.1"; sha256="0kzp568hd9c9a9qgniia5s5gv0q5f89xfvvwpzb197gqhs3x092v"; depends=[ada dummies kernelFactory randomForest]; broken = true; }; @@ -21673,7 +22032,6 @@ in with self; { adass = derive2 { name="adass"; version="1.0.0"; sha256="1g702pg335q9jwgdygb7n364ibad6z27fcd9yfim8gi4fcpjwlkq"; depends=[fda matrixcalc mvtnorm plot3D Rfast SparseM]; broken = true; }; adhoc = derive2 { name="adhoc"; version="1.1"; sha256="0a59fv9glcqh4zzd0887ndrhlcaylja6vay2ifajp8an29gjk1vv"; depends=[ape pegas polynom]; broken = true; }; adoption = derive2 { name="adoption"; version="0.6.4"; sha256="1xjkvj1ys2xmjgswqfsrry27zyqcc9hk9khl0j4s72gcc8az8sz6"; depends=[quadprog RandomFieldsUtils tkrplot]; broken = true; }; - adoptr = derive2 { name="adoptr"; version="1.0.0"; sha256="08d2fsqh5vczfr9cc8l554p6f0x85g58i5zg5j2m0chlmcispfk2"; depends=[glue nloptr]; broken = true; }; advclust = derive2 { name="advclust"; version="0.4"; sha256="1g8a8q4zh6d4152jb66fh7wj7k6ks5k4kfcazzw70jdn10yi6b38"; depends=[clue ggplot2 knitr MASS reshape2]; broken = true; }; aemo = derive2 { name="aemo"; version="0.3.0"; sha256="108scwyf0dyvn969cks3ikbj2pf2g4dw051asahx26pl0ggw7ijw"; depends=[assertthat dplyr lubridate stringr]; broken = true; }; agroclim = derive2 { name="agroclim"; version="0.3.0"; sha256="06mv18a73dpcdw2y2df83rx9kfxsd5x2zv6j5md3yzm9ij3rylvx"; depends=[abind cowplot easyNCDF ggforce ggplot2 ggpubr gtable multiApply ncdf4 raster reshape sp zoo]; broken = true; }; @@ -21684,6 +22042,7 @@ in with self; { akmedoids = derive2 { name="akmedoids"; version="1.3.0"; sha256="19d9fh1cygn04riwc7y7lzdncyxki9rzikf9f5m96vp0y687z2ka"; depends=[clusterCrit dplyr ggplot2 Hmisc kml signal]; broken = true; }; alignfigR = derive2 { name="alignfigR"; version="0.1.1"; sha256="0jsj0h7zpzj6ynfydl8qbggm03xx8db769rli7rcx9909xdxabk6"; depends=[ggplot2]; broken = true; }; allhomes = derive2 { name="allhomes"; version="0.3.0"; sha256="1z39qd7hkl2xy0lhf8sgc4rjf4ihi3zbsadchc97h7p7cn9mjbpk"; depends=[dplyr htmltab httr jsonlite magrittr purrr readr rlang stringr tibble tidyr]; broken = true; }; + allometric = derive2 { name="allometric"; version="2.1.0"; sha256="15g9xyyiipg602s465kc082h7mlpwjfg6p9g2ba6n9ahhvcrhma7"; depends=[curl dplyr ISOcodes jsonlite magrittr openssl progress purrr RefManageR rlang stringr tibble tidyr units vctrs]; broken = true; }; amber = derive2 { name="amber"; version="1.0.3"; sha256="0kc7g5rb0wrs1id1k0qay56063gpffwvcll38983b1l3k215mxiv"; depends=[classInt doParallel foreach Hmisc latex2exp ncdf4 raster rgdal rgeos scico sp viridis xtable]; broken = true; }; ambhasGW = derive2 { name="ambhasGW"; version="0.0.2"; sha256="0v517i4whip45pk6bwlwval9pz367pcgzz62b2z22mrwgi6m6bck"; depends=[raster rgdal yaml]; broken = true; }; ambiorix = derive2 { name="ambiorix"; version="2.1.0"; sha256="1831i5fv966cghp5xgq71wqzldlajyjj2p4nkhbw007w2dcn0y21"; depends=[assertthat cli fs glue httpuv jsonlite log promises websocket]; broken = true; }; @@ -21691,6 +22050,7 @@ in with self; { analogueExtra = derive2 { name="analogueExtra"; version="0.1-1"; sha256="1s3qs10hf6hkna0bicid1mc8x8r449bl93xpgyw6lnsjgh2yx62c"; depends=[analogue rgl vegan3d]; broken = true; }; analysisPipelines = derive2 { name="analysisPipelines"; version="1.0.2"; sha256="1rxam52wrbcjrvixb35b9ha37i8a0fczby49vmgzpnrbvkc50ldx"; depends=[dplyr futile_logger ggplot2 magrittr pipeR proto purrr RCurl rlang]; broken = true; }; analyz = derive2 { name="analyz"; version="1.4"; sha256="0qdh1gld2dkl0krbhm2vcqg8dfs03dn51rclgsw02554s06dlgxw"; depends=[]; broken = true; }; + anapuce = derive2 { name="anapuce"; version="2.3"; sha256="05k3ypy4dc8q4jv0by37k66pdwb1wmsd24i6nciris5knfdy9csg"; depends=[]; broken = true; }; anchors = derive2 { name="anchors"; version="3.0-8"; sha256="12gd2526y7s2a8i6b9xma2c3sc6zxnwzl6sn8b50hbxizwr8d34j"; depends=[MASS rgenoud]; broken = true; }; animalTrack = derive2 { name="animalTrack"; version="1.0.0"; sha256="0jlvfflpaq64s48sblzh1n1vx8g3870iss97whigri29s6hn79ry"; depends=[rgl]; broken = true; }; animaltracker = derive2 { name="animaltracker"; version="0.2.0"; sha256="1zv2nj4wfskz1lxfgw8l4gyrlv418drk8zl4cw55i5na6a39shcv"; depends=[dplyr forcats geosphere ggplot2 httr leaflet leaflet_extras lubridate maptools raster rgdal scales shiny shinyBS shinycssloaders shinyjs shinythemes shinyWidgets sp tibble tidyr zoo]; broken = true; }; @@ -21703,17 +22063,24 @@ in with self; { arcos = derive2 { name="arcos"; version="1.27"; sha256="02s4vpfsipww6i73lhrdawqlg01gp929n4sx6z869b12jixnq3ni"; depends=[curl dplyr httr jsonlite magrittr stringr tidyr urltools vroom]; broken = true; }; argon2 = derive2 { name="argon2"; version="0.4-0"; sha256="09hzl0wz0lw2v7g64rdv0lij2hq36zl37a6rmxwvinmjdzijcsyw"; depends=[]; broken = true; }; ariExtra = derive2 { name="ariExtra"; version="0.3.1"; sha256="1j8x2m9799i5kxrvsf2cjrffb5p6r4zjrr0khsy4i22xn7kyl8nf"; depends=[ari docxtractr httr jsonlite magrittr mime pdftools rmarkdown rvest text2speech tuneR xml2 yaml]; broken = true; }; + armada = derive2 { name="armada"; version="0.1.0"; sha256="191iwf5y1za3wssawkyi9jcingfqqxcvv88hglpw6j7y3x5f47hf"; depends=[anapuce circlize ClustOfVar ComplexHeatmap doParallel FAMT glmnet impute mvtnorm qvalue VSURF]; broken = true; }; artemis = derive2 { name="artemis"; version="1.1.1"; sha256="1v875xn0mvw7p7jdp6d3hpc4cp8yq2aq0b80rq1c619n9rkjq4ks"; depends=[BH ggplot2 lme4 loo Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; broken = true; }; asVPC = derive2 { name="asVPC"; version="1.0.2"; sha256="07nfwr0lsfpwgfdgzcdn1svw8dnjfni5ga9q77yjd1bj0wf76ci2"; depends=[ggplot2 plyr]; broken = true; }; assemblerr = derive2 { name="assemblerr"; version="0.1.1"; sha256="12kwdp71bgbk67d4038j2bhbw9ja3vqm0m01bzdsrpk4dxh2p3d3"; depends=[cli glue magrittr purrr rlang tidyselect vctrs]; broken = true; }; assertive = derive2 { name="assertive"; version="0.3-6"; sha256="02palil82idqhhshcdjsfsja9qkqnd0dczqzj5gbccy4hfg1c0y4"; depends=[assertive_base assertive_code assertive_data assertive_data_uk assertive_data_us assertive_datetimes assertive_files assertive_matrices assertive_models assertive_numbers assertive_properties assertive_reflection assertive_sets assertive_strings assertive_types knitr]; broken = true; }; + assertive_base = derive2 { name="assertive.base"; version="0.0-9"; sha256="07m0ddz092bgbl2fn1yk932h0iajdcqkri632477wl5a1q5r3w2b"; depends=[]; broken = true; }; assertive_code = derive2 { name="assertive.code"; version="0.0-4"; sha256="11qkhbjyxw0njzhcszyc2452518yrn3jr5l4n9jnzq10xms090ig"; depends=[assertive_base assertive_properties assertive_types]; broken = true; }; assertive_data = derive2 { name="assertive.data"; version="0.0-3"; sha256="00cvg2g36mdl8plrzx40m63qd55742mddqrchwy9n3c7mm4gn02s"; depends=[assertive_base assertive_strings]; broken = true; }; assertive_data_uk = derive2 { name="assertive.data.uk"; version="0.0-2"; sha256="1fzjvhwp7mwkqqix29khvs6zcrc82n6j4czvzzb473vyjyvdlj5b"; depends=[assertive_base assertive_strings]; broken = true; }; assertive_data_us = derive2 { name="assertive.data.us"; version="0.0-2"; sha256="1bgspn0sccmp9z7s7djvdvprgxlyc5vrxznp4zfjb79kwvgn83hq"; depends=[assertive_base assertive_strings]; broken = true; }; assertive_datetimes = derive2 { name="assertive.datetimes"; version="0.0-3"; sha256="151d05z8n6dpl44pqsa1jfi0ijbigr3zfc43xlw53nd8ymi22kh1"; depends=[assertive_base assertive_types]; broken = true; }; + assertive_files = derive2 { name="assertive.files"; version="0.0-2"; sha256="02pfz8j5vwcj5kl6zca46894li7lxwnlrr29j922f14ay6kdssmy"; depends=[assertive_base assertive_numbers]; broken = true; }; + assertive_matrices = derive2 { name="assertive.matrices"; version="0.0-2"; sha256="16sykzcndv6y2d43x6v9n7m95kv76364h39kh10w4z0xw6ksfqil"; depends=[assertive_base]; broken = true; }; + assertive_models = derive2 { name="assertive.models"; version="0.0-2"; sha256="0bn4j4v5qvb2d672cgri61p8d9v258pmz35y3lvm6b9mdxwdi9mr"; depends=[assertive_base]; broken = true; }; + assertive_numbers = derive2 { name="assertive.numbers"; version="0.0-2"; sha256="0jc3ss64j4m7bjydhagwwmka5n7c72vpw4kfcch0m5jvkq5qrqds"; depends=[assertive_base]; broken = true; }; assertive_properties = derive2 { name="assertive.properties"; version="0.0-5"; sha256="1pgljbwwbvbl4kc5c8mcv0qbzq3k6fzi29k88811yml263sm92dn"; depends=[assertive_base]; broken = true; }; assertive_reflection = derive2 { name="assertive.reflection"; version="0.0-5"; sha256="1g9lpwzy6r2xmyi2mlbcccnfgyzhzbmx5bsicf3vkffxrlkrpjn2"; depends=[assertive_base]; broken = true; }; + assertive_sets = derive2 { name="assertive.sets"; version="0.0-3"; sha256="1cqvh2syvh5b6d85h601zjmsdbbf3h8q98ids4dfl4frdshpasc7"; depends=[assertive_base]; broken = true; }; assertive_strings = derive2 { name="assertive.strings"; version="0.0-3"; sha256="0n6jrk88670g4ym0r8ii40a08a90z1xadj8wcryk8h0nl04dchfm"; depends=[assertive_base assertive_types stringi]; broken = true; }; assertive_types = derive2 { name="assertive.types"; version="0.0-3"; sha256="0zxq1jfrzgw95ll7alvm0xnk7aihjdksngq4ya2whyvfjbmv4vdb"; depends=[assertive_base assertive_properties codetools]; broken = true; }; astrolibR = derive2 { name="astrolibR"; version="0.1"; sha256="0gkgry5aiz29grp9vdq9zgg6ss47ql08nwcmz1pfvd0g0h9h75l8"; depends=[]; broken = true; }; @@ -21727,14 +22094,14 @@ in with self; { autoencoder = derive2 { name="autoencoder"; version="1.1"; sha256="0ly1aanayk28nx6yqfhl7d0zm4vg6rfjikf5ibn8zhmkrfyflj1y"; depends=[]; broken = true; }; autohd = derive2 { name="autohd"; version="0.1.0"; sha256="14wyiqhmbp8v52s1p5svvcjpwg8pwqrqh3zzm17blcl2hr4p9cy8"; depends=[broom coxme hdbm Hmisc ICBayes icenReg missForest mlr3 Rdpack rjags schoolmath survival SurvRegCensCov tibble usethis]; broken = true; }; automultinomial = derive2 { name="automultinomial"; version="2.0.0"; sha256="04rjg3xjlhnkchzvdxqm762z5abm81s5b9czgzmli30zh07bf3fd"; depends=[igraph Matrix numDeriv]; broken = true; }; - autostats = derive2 { name="autostats"; version="0.4.0"; sha256="0xyfv2akv308g3r0wq2dcg7l24p6bf3524x1ikj1lfmw07hca6k6"; depends=[broom data_table dials dplyr framecleaner ggeasy ggplot2 ggthemes gtools janitor jtools magrittr nnet parsnip party patchwork presenter purrr recipes recosystem rlang rlist rsample stringr tibble tidyr tidyselect tune workflows xgboost yardstick]; broken = true; }; avfintools = derive2 { name="avfintools"; version="0.1.0"; sha256="1v04z9qr80zikjb5q0h9796sgnmw43l5ygxs99gsgsghlyj9nrla"; depends=[alphavantager dplyr ggplot2 lubridate plotly tibble]; broken = true; }; aziztest = derive2 { name="aziztest"; version="0.2.1"; sha256="0rpnyrb7zi42l1fc8ni0r5d0y6a4dr56917z8i54mv1jrk4hijjd"; depends=[]; broken = true; }; b6e6rl = derive2 { name="b6e6rl"; version="1.1"; sha256="17scdskn677vaxx1h2jypqaffvjgczryplg17nr3wigi1x0cxg7a"; depends=[]; broken = true; }; bPeaks = derive2 { name="bPeaks"; version="1.2"; sha256="1z6jghcmw0lwv17ms7gdp5zzimaawq3ahbwkxa4062g373592smd"; depends=[]; broken = true; }; - bRacatus = derive2 { name="bRacatus"; version="1.0.11"; sha256="0mj9bqgvmss9jdaphc4rgmxp4909lnwgi3c86pr6yfsd9zcjgd74"; depends=[data_table geojsonio jsonlite maptools plotfunctions raster rgbif rgdal rgeos rworldmap sp]; broken = true; }; + baRulho = derive2 { name="baRulho"; version="1.0.6"; sha256="17g3xs0lxdpbbi52x27r00vfdgxdhjblyy939scm3c5z01fhxxnb"; depends=[fftw pbapply seewave tuneR warbleR]; broken = true; }; babar = derive2 { name="babar"; version="1.0"; sha256="13j5klrcnd4dwrgdbxlvwcj56l9mzi4j9ga6jj5i04pgdc6vsfx5"; depends=[]; broken = true; }; babette = derive2 { name="babette"; version="2.3.3"; sha256="0c9v6dm3n9bnr5x4nln9a51dff557vrhxdfji9xikwnz0vv8656v"; depends=[beastier beautier mauricer phangorn remotes stringr tracerer xml2]; broken = true; }; + babsim_hospital = derive2 { name="babsim.hospital"; version="11.8.8"; sha256="03kd9kvqq0jy1f7qjbbmm5zn8w0nqwwdpan64ymyzmsxb59407cj"; depends=[checkmate curl data_table dplyr ggplot2 golem igraph lubridate markovchain padr plyr rvest scales simmer slider SPOT testthat xml2]; broken = true; }; badgecreatr = derive2 { name="badgecreatr"; version="0.2.0"; sha256="0mdixklaxky5gs8zm99ky280vxxlbq1mxnaarq6x0d1cb71bzv4l"; depends=[git2r]; broken = true; }; baggedcv = derive2 { name="baggedcv"; version="1.0"; sha256="1rqs4sm6g1anck5s2dxlm1vcmylpphcbs2dpvf1sjki5lrzdq9z4"; depends=[doParallel foreach kedd mclust]; broken = true; }; baggingbwsel = derive2 { name="baggingbwsel"; version="1.0"; sha256="0khvkxml4nwkahgl5ijdv0bjgwabmznzq99p71iw26ck808hafkl"; depends=[doParallel foreach kedd mclust misc3d nor1mix Rcpp rgl rpanel sm tkrplot]; broken = true; }; @@ -21742,12 +22109,12 @@ in with self; { barplot3d = derive2 { name="barplot3d"; version="1.0.1"; sha256="182kpiknv3id1bsgcc6b3ahbxmm8x3lxcpf1r6rckpr3s0whfx3g"; depends=[rgl]; broken = true; }; bartBMA = derive2 { name="bartBMA"; version="1.0"; sha256="15syk5a3lgzfyp17wk8mk14317yxsr47br26kyah5jg3dq4cyqdg"; depends=[BH mvnfast Rcpp RcppArmadillo Rdpack]; broken = true; }; baseballDBR = derive2 { name="baseballDBR"; version="0.1.2"; sha256="0w54g1avcqamc12lmvjchlqbqck9jfjccm441k03nsql460mpydq"; depends=[dplyr magrittr rvest xml2]; broken = true; }; - basecamb = derive2 { name="basecamb"; version="1.1.2"; sha256="01zigv4wp19vmp645dzvbr26nrvhv4jxpqssvfc480v0dj3mavva"; depends=[assertive_types assertthat dplyr Hmisc mice purrr survival]; broken = true; }; baseflow = derive2 { name="baseflow"; version="0.13.2"; sha256="02ygx32dfszk66f33wfszkvwi51v8zw2s45y9nlrgfws9rlpzll2"; depends=[airGR]; broken = true; }; basicTrendline = derive2 { name="basicTrendline"; version="2.0.5"; sha256="0402nvm3i32sx3m3c7r74iaj22h570v819yiwkraicjpmg55dghi"; depends=[investr scales]; broken = true; }; basicspace = derive2 { name="basicspace"; version="0.24"; sha256="1cy226njbax7dcgql89fns4l4w9fq328x3h0vb93l5jk883jgi8h"; depends=[]; broken = true; }; bastah = derive2 { name="bastah"; version="1.0.7"; sha256="08xdba16wj0inp0kq2sbcrdr6wj8bwlq7rqnfrzjrz03wxhc5bk0"; depends=[BigQuic foreach glmnet lars MASS Matrix scalreg]; broken = true; }; batchr = derive2 { name="batchr"; version="0.0.2"; sha256="0fkrv6dlyla7bbl00f16lypnz5idyjz9kdqslgbx3pnfwx5hngwx"; depends=[chk cli furrr hms hmstimer yesno]; broken = true; }; + bayesbr = derive2 { name="bayesbr"; version="0.0.1.0"; sha256="0zx123xqw2qglwxsnq0jy56kwk6zczslagapij9aj9n5bsifbcmx"; depends=[BH coda dplyr fdrtool Formula ggplot2 loo magrittr Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders stringr tidyr]; broken = true; }; bayeslincom = derive2 { name="bayeslincom"; version="1.3.0"; sha256="0gk2ybp0m717kv986j91n5amfc282gdpcrjkq46gwzn0zhyxg8b8"; depends=[ggplot2]; broken = true; }; bayesloglin = derive2 { name="bayesloglin"; version="1.0.1"; sha256="0j2ziahf6mwsz2gvb1azvdzlmszlpqgr5zqcqa68pxgq947sa2cs"; depends=[igraph]; broken = true; }; bayesmodels = derive2 { name="bayesmodels"; version="0.1.1"; sha256="1m9428fzirpfzypd2zdcqhjv2cm05s3qmlxj4ymz6i1dg32svqzr"; depends=[BASS bayesforecast brms bsts cli crayon dials dplyr magrittr modeltime parsnip purrr rlang Rlgt rstan rstudioapi tibble timetk workflows]; broken = true; }; @@ -21758,7 +22125,6 @@ in with self; { bbricks = derive2 { name="bbricks"; version="0.1.4"; sha256="1hv4hvnns9vgl6c3n7kg3g9mfcp26ksps29hdl5nwi28cgkx80w2"; depends=[]; broken = true; }; bbsBayes = derive2 { name="bbsBayes"; version="2.5.3"; sha256="0vh7idcj89l5nlgg0kf41pvs1d1lpn5r1p254afcycn0sr06ky6f"; depends=[dplyr geofacet ggplot2 ggrepel jagsUI mgcv progress rappdirs sbtools sf stringr]; broken = true; }; bcTSNE = derive2 { name="bcTSNE"; version="0.11.1"; sha256="1j7aab9j30iypbjvid3dfg8rnz69i83k59ympkycv9k6xwpi330p"; depends=[RSpectra Rtsne splatter]; broken = true; }; - bcc = derive2 { name="bcc"; version="1.3.1"; sha256="0ac0wasdifd0v47r9sxrsix5hv7masiphn6dyxpqdrd11z7iimgz"; depends=[qcc]; broken = true; }; bcp = derive2 { name="bcp"; version="4.0.3"; sha256="0vhs89lb2wpanqsljclpvwbjmgdsc3jicws8bzqiqh8mbs3nzpxy"; depends=[Rcpp RcppArmadillo]; broken = true; }; bcpmeta = derive2 { name="bcpmeta"; version="1.0"; sha256="02fw1qz9cvr7pvmcng7qg7p04wxxpmvb2s8p78f52w4bf694iqhl"; depends=[mvtnorm]; broken = true; }; bdchecks = derive2 { name="bdchecks"; version="0.1.7"; sha256="1pzsvn1m1f9bdmhxmh57pvn9jm4z41rkvv6h60hq2lfgkapnjy7q"; depends=[bdDwC data_table DT finch knitr rgbif shiny shinyBS shinydashboard shinyjs spocc yaml]; broken = true; }; @@ -21775,6 +22141,8 @@ in with self; { biasbetareg = derive2 { name="biasbetareg"; version="1.0"; sha256="1562zdin0y5mrp36ih11ir3h9cv49cx1l98chxd89fkj8x3c1fbg"; depends=[betareg]; broken = true; }; biclique = derive2 { name="biclique"; version="1.0.5"; sha256="1fdf2r1jc2x8yw0fcw7yyjdxz4b870w6y7mr68qixqxwpl6943zq"; depends=[]; broken = true; }; bigQueryR = derive2 { name="bigQueryR"; version="0.5.0"; sha256="051c8rkj77dm78237dzhf3lcdawv0xv72pwfiim9bi89z9mp6f9m"; depends=[assertthat googleAuthR googleCloudStorageR httr jsonlite]; broken = true; }; + bigdist = derive2 { name="bigdist"; version="0.1.4"; sha256="1qfnmhyfadmnnagbhdl4jjrb53i1srszf19idp8fy6bczbjq85yi"; depends=[assertthat bigstatsr furrr proxy]; broken = true; }; + biglmm = derive2 { name="biglmm"; version="0.9-2"; sha256="1zj1h2hszps3w913j2dk4cyj5jsqkkxsm3pcjlc4jnq810j100l6"; depends=[DBI]; broken = true; }; bimetallic = derive2 { name="bimetallic"; version="1.0"; sha256="181qi4dr0zc7x6wziq7jdc1his20jmprfpq3hrfm56fr5n1sj8wl"; depends=[]; broken = true; }; bimixt = derive2 { name="bimixt"; version="1.0"; sha256="0nhszpzjqy8z3vngl5jdzqxzshnn92wgi0ci5n3n5kzi24xkfrzc"; depends=[pROC]; broken = true; }; binaryLogic = derive2 { name="binaryLogic"; version="0.3.9"; sha256="19ig9qgjjnivfihjy41pc13qlrb95679mmk4zks5lbbri8qi4qxj"; depends=[]; broken = true; }; @@ -21785,6 +22153,7 @@ in with self; { binomialcftp = derive2 { name="binomialcftp"; version="1.0"; sha256="00c7ymlxk1xnx3x1814x7bcyir7q5sy4rb82dcpzf2bdly4xa1qr"; depends=[]; broken = true; }; binomlogit = derive2 { name="binomlogit"; version="1.2"; sha256="1njz1g9sciwa8q6h0zd8iw45vg3i1fwcvicj5y8srpk8wqw3qp7k"; depends=[]; broken = true; }; bioOED = derive2 { name="bioOED"; version="0.2.1"; sha256="0wx58bngpzlrbbcnx8l1lqhsg51y98wcym1238p87drf64x2mj1n"; depends=[bioinactivation corrplot dplyr FME ggplot2 rlang tidyr tidyselect tidyverse]; broken = true; }; + bioassays = derive2 { name="bioassays"; version="1.0.1"; sha256="1y32wxkv14l7r0f35y4hxxxh3zpw2gd4hsjmkajhmzmnvg5jdw78"; depends=[dplyr ggplot2 magrittr nplr reshape2 rlang]; broken = true; }; biogeo = derive2 { name="biogeo"; version="1.0"; sha256="14sqgg8b06gp5dajxvyj9s3ndsk7jpkfr0mkyl2l61kgp6qx53rh"; depends=[maptools raster sp stringr vegan]; broken = true; }; biokNN = derive2 { name="biokNN"; version="0.1.0"; sha256="113lynbxmv88ycvbsq9drn2f75md7yajhicfw8qd8l6lawiq1fqc"; depends=[cluster desc dplyr ggplot2 lme4 magrittr mice mitml tidyr]; broken = true; }; bioset = derive2 { name="bioset"; version="0.2.3"; sha256="15vchim8cim42j1if0jars696rh50vmbggr9748q321f6ngm1w1i"; depends=[dplyr magrittr rlang tibble tidyr]; broken = true; }; @@ -21808,7 +22177,6 @@ in with self; { bnormnlr = derive2 { name="bnormnlr"; version="1.0"; sha256="0l2r7vqikak47nr6spdzgjzhvmkr9dc61lfnxybmajvcyy6ymqs9"; depends=[mvtnorm numDeriv]; broken = true; }; bnpmr = derive2 { name="bnpmr"; version="1.2"; sha256="0vpqhs1h2mphn9w5yngb7lxvmzrhn7mkj7ca6hykhhg48s2ra98g"; depends=[]; broken = true; }; bnspatial = derive2 { name="bnspatial"; version="1.1.1"; sha256="1drm9ia4lr80wahbbn9xrw658ppmgxm4iadwv77jz1x786dda2n1"; depends=[doParallel foreach gRain gRbase raster rgdal sf]; broken = true; }; - bolsec = derive2 { name="bolsec"; version="0.1.0"; sha256="0wrfw8h7s59ln2b0m9g0jgvwqvr4icv2wjxqjx6rcj366a0nx3sk"; depends=[dplyr formattable rvest]; broken = true; }; bookdownplus = derive2 { name="bookdownplus"; version="1.5.8"; sha256="1cdxz5c69cgdk7wxr0xwhzw361rpg7j8xjv9hjf1877qqmhxbrkd"; depends=[bookdown knitr magick xaringan]; broken = true; }; boomer = derive2 { name="boomer"; version="0.1.1"; sha256="16gwdvcp8bz5bgmvxsvc9iyz2a6mpwf5vgilc1lhf9l4n0l1m685"; depends=[crayon pryr rlang rstudioapi styler withr]; broken = true; }; boostr = derive2 { name="boostr"; version="1.0.0"; sha256="123ag8m042i1dhd4i5pqayqxbkfdj4z0kq2fyhxfy92a7550gib2"; depends=[foreach iterators stringr]; broken = true; }; @@ -21819,11 +22187,11 @@ in with self; { breakage = derive2 { name="breakage"; version="1.1-1"; sha256="0zjazyz92criiimpz4wyd4hd8ccspvh3hhqpd4qkfdzdf9wp3kns"; depends=[Imap]; broken = true; }; brickr = derive2 { name="brickr"; version="0.3.5"; sha256="1a6yxhq2zly3i3gs4dd19xhyrin1qaxdr7x3a887j7zbcj0j4z9q"; depends=[colorspace dplyr farver ggplot2 magrittr purrr rgl scales tidyr]; broken = true; }; briskaR = derive2 { name="briskaR"; version="1.0.4"; sha256="016gpgbf5zc9jkagj439n2ylfbmsikg0n6v76wf4lchv4wvrsby4"; depends=[deldir deSolve fasterize fftwtools MASS mvtnorm raster Rcpp RcppArmadillo rgdal rgeos sf sp testthat]; broken = true; }; - brolgar = derive2 { name="brolgar"; version="1.0.0"; sha256="0jw0cnszwdcj6jdxpr17bq338jaxihaacg62rr3n1ayig54bgbyn"; depends=[dplyr fabletools ggplot2 glue magrittr purrr rlang tibble tidyr tsibble vctrs]; broken = true; }; broomExtra = derive2 { name="broomExtra"; version="4.3.2"; sha256="02ijhqgymm8nv40fy4j6psqkhak3dfwz8i5k0ay3g7aic49lzcbf"; depends=[broom broom_mixed dplyr magrittr parameters performance rlang]; broken = true; }; brr = derive2 { name="brr"; version="1.0.0"; sha256="050ivnqcaxiyypd1sxfpy6ianhzzmvs6c77ga40g3440cvfigkgw"; depends=[gsl hypergeo pander stringr SuppDists TeachingDemos]; broken = true; }; brranching = derive2 { name="brranching"; version="0.7.0"; sha256="06jy3qhbr0v4m1j4j8a7fb7ic59sx4zhlsm1yb3g6rdwc00d67wj"; depends=[ape conditionz crul curl phylocomr phytools taxize]; broken = true; }; bsem = derive2 { name="bsem"; version="1.0.0"; sha256="1h4wsib6ppqj8nbvj4pzkm04bzrdkg9l7xfmzzmld9cswai4iw52"; depends=[BH coda DiagrammeR lattice magrittr Rcpp RcppEigen rstan rstantools shiny StanHeaders viridis visNetwork]; broken = true; }; + bucky = derive2 { name="bucky"; version="1.0.7"; sha256="1ymlpmhgvhp7n7y9dbvi6zh73y8jvr09axq4skcliam8ks2xx1pm"; depends=[lmtest sandwich]; broken = true; }; buffeRs = derive2 { name="buffeRs"; version="0.31"; sha256="1yr2bg2cyl8sm4g7jrjw9apj5lqhbqscw5mshs8r8niz0fkyq6lg"; depends=[sf]; broken = true; }; bvenn = derive2 { name="bvenn"; version="0.1"; sha256="1xrya49w5bd2b7plfxpqla60b2828rkm0rjmc4qnqzvrahsbal0y"; depends=[]; broken = true; }; bvpSolve = derive2 { name="bvpSolve"; version="1.4.4.1"; sha256="0xq5m57cya6l3c1glshrd29ywpm1rky36kqqrp4mw2scakz9p4wj"; depends=[deSolve rootSolve]; broken = true; }; @@ -21835,6 +22203,8 @@ in with self; { calcWOI = derive2 { name="calcWOI"; version="1.0.3"; sha256="1bxsn9b99hnb365qvlzr0ymwavamlyhs5sm9s2fdjh4zv3f32n3l"; depends=[dualtrees LS2W wavethresh]; broken = true; }; caliver = derive2 { name="caliver"; version="2.0.0"; sha256="04qa3zrk70c8ak70djfh23jyfxs8293s8wzkk6cs0nyrknhaxzzj"; depends=[ggplot2 lubridate ncdf4 raster rworldmap]; broken = true; }; canadacovid = derive2 { name="canadacovid"; version="0.3.4"; sha256="1hxcz3bk0p063cidj19zzacvxarpracnzglmb1212b2jx9w4i3gw"; depends=[dplyr httr jsonlite lubridate magrittr purrr rlang stringr tibble tidyr tidyselect]; broken = true; }; + cancerTiming = derive2 { name="cancerTiming"; version="3.1.8"; sha256="1sfi8q2f5ag7iak0sf9pmqncb89w3gnxdiwjwpivkwhr28ais4mq"; depends=[gplots LearnBayes]; broken = true; }; + cap = derive2 { name="cap"; version="1.0"; sha256="1pv8hskxjbp589dn7rx80yaa1ld76x1w37bss2fyrys1p3qr78aa"; depends=[MASS multigroup]; broken = true; }; captioner = derive2 { name="captioner"; version="2.2.3"; sha256="0xg72pmgm84f0v45phfwxpsslhf12nhn1swmrj1yifj7g9sjvybj"; depends=[]; broken = true; }; capwire = derive2 { name="capwire"; version="1.1.4"; sha256="18a3dnbgr55yjdk6pd7agmb48lsiqjpd7fm64dr1si6rpgpl4i9c"; depends=[]; broken = true; }; cartools = derive2 { name="cartools"; version="0.1.0"; sha256="0gc5502373f0c2m2rh6awvyfqrg1wx1f341dm2byk9znba887lgs"; depends=[animation devtools dplyr gapminder ggplot2 knitr rlist rmarkdown roxygen2 sde shiny tidyverse usethis]; broken = true; }; @@ -21845,6 +22215,7 @@ in with self; { cat_dt = derive2 { name="cat.dt"; version="0.3.1"; sha256="0qr3azaxs339kfiiyzasc46xz4rb37prdwvdmv0c40cvba6zvapf"; depends=[ggplot2 Matrix Rglpk]; broken = true; }; catSplit = derive2 { name="catSplit"; version="0.1.0"; sha256="0nifbwczfs5g9xxlmqfwvcaxd940k5xmbdmamwlhvgif7myi6xr4"; depends=[caret data_table dplyr farff OpenML rpart stringr]; broken = true; }; catchr = derive2 { name="catchr"; version="0.2.31"; sha256="0mj3cgv2d217hcmyr8x0i83wysxhixgly5y1fs6jb1x09gs1cwnd"; depends=[purrr rlang]; broken = true; }; + cate = derive2 { name="cate"; version="1.1.1"; sha256="0wqfblyr7rjx9wnpbnv5lw2zv7nw3mbdjn866l1ng779vka1wdc5"; depends=[corpcor esaBcv leapp MASS Matrix ruv sva]; broken = true; }; catenary = derive2 { name="catenary"; version="1.1.2"; sha256="1n64kq3lkaf00a2mghs67hnxvi4dp6g12pwifyx0bd418wkw9wf3"; depends=[boot broom dplyr ggplot2 tidyverse]; broken = true; }; catnet = derive2 { name="catnet"; version="1.15.7"; sha256="015qh9k0jj5plp777j3kl20601qiwadkaqrdb0483h3gwqwy828g"; depends=[]; broken = true; }; catspec = derive2 { name="catspec"; version="0.97"; sha256="1crry0vg2ijahkq9msbkqknljx6vnx2m88bmy34p9vb170g9dbs1"; depends=[]; broken = true; }; @@ -21865,7 +22236,9 @@ in with self; { censusGeography = derive2 { name="censusGeography"; version="0.1.0"; sha256="1ncgd05ml571g3vy1g4p5xxg2bm08hbb6d5r3hpz7frn7w3l8l1d"; depends=[qdapTools]; broken = true; }; censusxy = derive2 { name="censusxy"; version="1.1.1"; sha256="1gdry73xzcixa3hfchlf2xmmlnhk1vsg7k3axvynvlr493i7qf2a"; depends=[doParallel foreach httr]; broken = true; }; censys = derive2 { name="censys"; version="0.1.0"; sha256="0r0yvaidn0qn96hx461415hywsjfgaz9wvvdssx7w97v2ndnk9sy"; depends=[httr jsonlite purrr stringi]; broken = true; }; + centralplot = derive2 { name="centralplot"; version="0.1.0"; sha256="1slzvbm1vvgj1gkcx9pb46fz8q55vfyqrxsvx4qzi5kp7d9h4dy2"; depends=[ggplot2]; broken = true; }; cernn = derive2 { name="cernn"; version="0.1"; sha256="0gz2x20pgsiq85hwkkpg4s1cdlw9plygx0446djc7qsymp469p2w"; depends=[]; broken = true; }; + cfbfastR = derive2 { name="cfbfastR"; version="1.9.0"; sha256="0b5zagk5nwmq5gn3m3sva8ns7pbp5iqhkyfcwv3xf95qbshvpz6b"; depends=[cli data_table dplyr glue httr janitor jsonlite magrittr mgcv nnet progressr purrr Rcpp RcppParallel rlang stringr tibble tidyr]; broken = true; }; cgalMeshes = derive2 { name="cgalMeshes"; version="2.2.0"; sha256="09iq6v5xizf0y3qzr7lkbwck8yh8rhbvr8c3m5gw95rs056njmj8"; depends=[BH data_table onion R6 Rcpp RcppCGAL RcppColors RcppEigen rgl]; broken = true; }; cgalPolygons = derive2 { name="cgalPolygons"; version="0.1.1"; sha256="13gj0wkpcs51zpvas8rai8wk0wpvmkz91x9r99qfaz4fwzq692aj"; depends=[BH R6 Rcpp RcppCGAL RcppEigen]; broken = true; }; cgdsr = derive2 { name="cgdsr"; version="1.3.0"; sha256="07yc819hkabpzzh0g0cbqza6bcfy67b2marrzz1lj97f9iba78ja"; depends=[httr R_methodsS3 R_oo]; broken = true; }; @@ -21879,6 +22252,7 @@ in with self; { cheb = derive2 { name="cheb"; version="0.3"; sha256="0vqkdx7i40w493vr7xywjypr398rjzdk5g410m1yi95cy1nk4mc7"; depends=[]; broken = true; }; chebpol = derive2 { name="chebpol"; version="2.1-2"; sha256="126cgqnl9jy332q0ywg9dr11d4q1aichwwakb1xcrxrqw2j26zzi"; depends=[geometry]; broken = true; }; checkr = derive2 { name="checkr"; version="0.5.0"; sha256="14hkpfbw5ibdwz2jygir2f2bb2qgrj62gn3449n4dif31nswaj2f"; depends=[err]; broken = true; }; + chemmodlab = derive2 { name="chemmodlab"; version="2.0.0"; sha256="01af0j24vymxiqahwhcf4kp0x603yllvlgcxnybsi2wnzm71swk7"; depends=[caret class e1071 elasticnet KernSmooth lars MASS MSQC nnet pls pROC randomForest rpart tree]; broken = true; }; chessR = derive2 { name="chessR"; version="1.5.2"; sha256="1czv5y4ybbi15b87959vri25fy31yv2l2cdd5q6p9fw291kj1qnp"; depends=[curl dplyr httr jsonlite lubridate magrittr purrr rlang rvest stringr tidyr xml2]; broken = true; }; chi2x3way = derive2 { name="chi2x3way"; version="1.1"; sha256="13qc8sigiw4gcxk8y50q7yfgzbssjyl41fizzjqzcp3p14kpsmzw"; depends=[]; broken = true; }; chickn = derive2 { name="chickn"; version="1.2.3"; sha256="1d3xl2pigan6vb29nk2ks04dsl5vy16cv9z7miskmhcqcx2wm1qb"; depends=[bigstatsr doParallel doRNG foreach MASS mvnfast nloptr pracma Rcpp RcppArmadillo RcppParallel Rdpack rmio zipfR]; broken = true; }; @@ -21891,19 +22265,22 @@ in with self; { citccmst = derive2 { name="citccmst"; version="1.0.2"; sha256="1b7awn1hjckxisfdi4ck697hwd4a5sqklwi7xzh6kgqhk9pv7vjn"; depends=[]; broken = true; }; ciuupi = derive2 { name="ciuupi"; version="1.1.0"; sha256="0czfmmf62p1vml24s87pdwv52spqycchpkqzwk8vyd4n1z27r5s2"; depends=[functional nloptr pracma statmod]; broken = true; }; clampSeg = derive2 { name="clampSeg"; version="1.1-1"; sha256="1zrndnd8n7ssn2fm0l7y31a2la0nsybqsl4j44r0mmc1m0m94vks"; depends=[lowpassFilter stepR]; broken = true; }; - clarkeTest = derive2 { name="clarkeTest"; version="0.1.0"; sha256="0vbb3j9rnh42qyp78a4jykp7p560d0ryfp28xgvxax8h8hr80457"; depends=[]; broken = true; }; classyfireR = derive2 { name="classyfireR"; version="0.3.8"; sha256="1k1j4p5xmracrlaxfmvpp1r6krirvpfrv0f0jq8377kmhxmdwmm5"; depends=[cli clisymbols crayon dplyr httr jsonlite magrittr purrr rjson RSQLite stringr tibble tidyjson tidyr]; broken = true; }; cleanerR = derive2 { name="cleanerR"; version="0.1.1"; sha256="0rghn8rx7dj5clmc1dqvqwfm9kiva04k9gxsjjga3109l4jcpg63"; depends=[data_table plyr]; broken = true; }; clere = derive2 { name="clere"; version="1.2.0"; sha256="0qc26ycycxphrbksk7jb1m6vh66a2zsnw8k4jnazs23sqdg24im9"; depends=[Rcpp RcppEigen]; broken = true; }; climate = derive2 { name="climate"; version="1.0.5"; sha256="17hfxav8j0zyyl1839sj7nysv08j5z7xwz3p42di16cyx57czm4w"; depends=[curl data_table httr XML]; broken = true; }; climdex_pcic = derive2 { name="climdex.pcic"; version="1.1-11"; sha256="01ax0kas43g3h21ixzc80f9gl4m9846gmk8v48rr0gkhcmbcc6jx"; depends=[PCICt Rcpp]; broken = true; }; + climenv = derive2 { name="climenv"; version="1.0.0"; sha256="0w1pz725b6sw854pinypgi57vb2xjis3xx53b4mggwpdghck6mk7"; depends=[climaemet dismo dplyr elevatr exactextractr geodata glue plyr randomForest sf sp Ternary terra]; broken = true; }; clinUtiDNA = derive2 { name="clinUtiDNA"; version="1.0"; sha256="0x3hb09073gkh60fc8ia0sfk948sm6z6j8sqkz275k4m8ryrabas"; depends=[]; broken = true; }; clpAPI = derive2 { name="clpAPI"; version="1.3.1"; sha256="0hjpdbmwaww5fznqkkg9jli5y8f8zyd7crn0imdb0xxypmnp7zgf"; depends=[]; broken = true; }; + clpm = derive2 { name="clpm"; version="1.0"; sha256="1dj9jx7r5d2azxkggkkqyhci7v80gl24qchw0x8xh84krl4cz2pz"; depends=[]; broken = true; }; + clustDRM = derive2 { name="clustDRM"; version="0.1-0"; sha256="1c5z08a15scp3nrwyh0c03pdaawvm3ivbygqpbglwxim7zf73rd2"; depends=[caret doParallel DoseFinding DT foreach IsoGene MCPMod multcomp ORCME ORIClust pheatmap RColorBrewer readr shiny]; broken = true; }; clustcurv = derive2 { name="clustcurv"; version="2.0.1"; sha256="1xkl84pd1a3phl5yfm21yr5c0gbmmg1wk9b0lyl2x8466v5hl53q"; depends=[doParallel doRNG foreach ggfortify ggplot2 Gmedian npregfast RColorBrewer survival]; broken = true; }; clusterGenomics = derive2 { name="clusterGenomics"; version="1.0"; sha256="127hvpg06is4x486g1d5x7dfkrbk7dj35qkds0pggnqxkq3wsc1c"; depends=[]; broken = true; }; clusterPower = derive2 { name="clusterPower"; version="0.7.0"; sha256="1ha7iz1afmgccxhxsl3y1fd9rbf35nrzp6bsz4c4zl0931xbazfb"; depends=[car dplyr foreach lme4 lmerTest mathjaxr nlme progress R_utils shiny tidyr]; broken = true; }; clustsig = derive2 { name="clustsig"; version="1.1"; sha256="0n5nf712vsa8zb0c2lv4gjqsgva62678vjngr9idgswb73shxm8v"; depends=[]; broken = true; }; cns = derive2 { name="cns"; version="0.1.0"; sha256="1kn1cq32pp05ag22n7iwjxn6lxpqn443npzk6vdskjm5pbnsc33k"; depends=[]; broken = true; }; + coalitions = derive2 { name="coalitions"; version="0.6.24"; sha256="1ya9g2i1ds2w4hxbacmql67a3hh1grycj74g6b7xb05h478ym87n"; depends=[checkmate dplyr ggplot2 gtools jsonlite lubridate magrittr purrr RCurl rlang rvest stringr tibble tidyr xml2]; broken = true; }; codadiags = derive2 { name="codadiags"; version="1.0"; sha256="1x243pn6qnkjyxs31h1hxy8x852r0fc952ww77g40qnrk8qw79xg"; depends=[coda]; broken = true; }; coexist = derive2 { name="coexist"; version="1.0"; sha256="15ydhrx996i6caa0360c2bgn2zvgwfg5wdhsqq1gvrggs15w7nml"; depends=[]; broken = true; }; collectArgs = derive2 { name="collectArgs"; version="0.4.0"; sha256="0fz5w1xsxiddzrwahrg50px4igyhd4plq655jaix6grancs7kvix"; depends=[magrittr]; broken = true; }; @@ -21918,7 +22295,10 @@ in with self; { compicc = derive2 { name="compicc"; version="0.1.0"; sha256="1j2yy4dw3g96vpm3dq81dixhfzm3nqqawphmmg9hcsqir5f6xg9a"; depends=[irr]; broken = true; }; composits = derive2 { name="composits"; version="0.1.1"; sha256="0njz6yn3dxi5czzmp93lcz2xr5gphiii857s5jggygq0xdszlx86"; depends=[anomalize dobin dplyr fastICA forecast ggplot2 gridExtra ICS kableExtra otsad pracma rlang tibble tidyr tsoutliers]; broken = true; }; compstatr = derive2 { name="compstatr"; version="0.2.1"; sha256="0pg8yacfb7jvg9xr0gmis8a4g339isd77h6wr8dd6w900q47xac0"; depends=[dplyr fs httr janitor lubridate purrr readr rlang rvest sf stringr tibble tidyr xml2]; broken = true; }; + comradesOO = derive2 { name="comradesOO"; version="0.1.1"; sha256="0x0y3c4ihfss6rxdd9fws506vip9rr11485icxq41rp4x8zm2rk9"; depends=[doParallel foreach GenomicRanges ggplot2 ggrepel heatmap3 igraph IRanges MASS mixtools R4RNA RColorBrewer reshape2 RRNA S4Vectors seqinr tidyverse TopDom]; broken = true; }; + concordancer = derive2 { name="concordancer"; version="1.0.2"; sha256="1hkm0ybzaiyd2qsic11gjkq2iw7j9rw85rfgrss0qmnak506kim7"; depends=[Rcpp]; broken = true; }; concreg = derive2 { name="concreg"; version="0.7"; sha256="0g4my3ra9p797vcky5hsgcicsdbmczgd8fklxrkw2jrgwc0xrkaf"; depends=[survival]; broken = true; }; + concrete = derive2 { name="concrete"; version="1.0.5"; sha256="05hl3ikdh8776hgw0wqz6acir8brkszgg01169q2v1dhgcsnfyjb"; depends=[data_table MASS nleqslv origami Rcpp RcppArmadillo SuperLearner survival zoo]; broken = true; }; concurve = derive2 { name="concurve"; version="2.7.7"; sha256="185jwz7a33sc9gbkfbcxwzgzd39xn5x72d0nk6p045mq3xssk3j9"; depends=[bcaboot boot colorspace dplyr flextable ggplot2 knitr metafor officer pbmcapply ProfileLikelihood scales survival survminer tibble tidyr]; broken = true; }; condmixt = derive2 { name="condmixt"; version="1.1"; sha256="1x6n3ylaa9ywvz7v63i2pvd2lxm95wq19xy741g9hy73ld7hd7zn"; depends=[evd]; broken = true; }; confoundr = derive2 { name="confoundr"; version="1.2"; sha256="000vf828qv04pplx8yc8q3mafxf4g0axip6z5zbsj2581yxv9jjh"; depends=[dplyr ggplot2 gridExtra magrittr purrr rlang Rmpfr scales stringr tidyr]; broken = true; }; @@ -21929,6 +22309,7 @@ in with self; { convertGraph = derive2 { name="convertGraph"; version="0.1"; sha256="1jsrygj6ydzc0nzyzaq95j4blqavj7dqz182vgm1ckv8an3if0jx"; depends=[]; broken = true; }; convexjlr = derive2 { name="convexjlr"; version="0.8.1"; sha256="1x2ra1xcyd7bvc7wq49wpihh0g9ygh1bq5214vvrhfrjfjifvlaw"; depends=[JuliaCall magrittr]; broken = true; }; cooltools = derive2 { name="cooltools"; version="2.1.27"; sha256="1f22qpwf9ynqf9n4hl0kz6cy8bsz47dcmvz0wawq2isw5wn3jcs5"; depends=[bit64 celestial cubature data_table FNN jpeg MASS plotrix png pracma randtoolbox raster Rcpp sp]; broken = true; }; + coopProductGame = derive2 { name="coopProductGame"; version="2.0"; sha256="1348pgqfvvysdixsjibgkvwjsmqasnlmwf9kyr39lw8jb81z25h0"; depends=[dplyr GameTheory ggplot2 gtools kappalab lpSolveAPI]; broken = true; }; cooptrees = derive2 { name="cooptrees"; version="1.0"; sha256="0izvwna1jsqik3v5fz1r4c86irvma42clw0p4rdvwswv5pk698i1"; depends=[gtools igraph optrees]; broken = true; }; corTools = derive2 { name="corTools"; version="1.0"; sha256="0arvqk2xp19ap73zmdk0kb1fycb3v2mf65b4bhanvcqwr4kg4vdk"; depends=[]; broken = true; }; coreTDT = derive2 { name="coreTDT"; version="1.0"; sha256="14rnh61gk3m6g8rq77hm9ybds0px15di2mxm3jiyfdfynx5ng58f"; depends=[]; broken = true; }; @@ -21939,7 +22320,6 @@ in with self; { couchDB = derive2 { name="couchDB"; version="1.4.1"; sha256="1n99amvnsjp88y091603hjsvp243c5i6dbrsvdjfmzgj5dsrv70m"; depends=[bitops httr RCurl rjson]; broken = true; }; countyfloods = derive2 { name="countyfloods"; version="0.1.0"; sha256="0ld8p8dfk9khvwffbn8sad0j3an25s7cvbi6jxljgx4zc6ldh699"; depends=[dataRetrieval dplyr ggplot2 lubridate maps plyr R_utils tidyr]; broken = true; }; countytimezones = derive2 { name="countytimezones"; version="1.0.0"; sha256="0sk22fmz9d3wvlfvjl1xdavvl04q1ywy8ww2gi5am3yiizkf0v9w"; depends=[dplyr lubridate]; broken = true; }; - coursekata = derive2 { name="coursekata"; version="0.15.0"; sha256="06w8ql6frbbr41q0d1y3gpjwkhlfkhyv45mjlxpg5q0k8r0ydvwi"; depends=[cli dslabs ggformula ggplot2 glue Lock5withR lsr Metrics mosaic pak palmerpenguins purrr rlang supernova vctrs viridisLite]; broken = true; }; covLCA = derive2 { name="covLCA"; version="1.0"; sha256="15jsjrlaws1cqyrwvh4lzbhxkb11jmgpmddg98nfrzmjpczn2iw3"; depends=[Matrix mlogit poLCA]; broken = true; }; covidregionaldata = derive2 { name="covidregionaldata"; version="0.9.3"; sha256="1pq3il8wzygih419avf3nn5swd0z09mf2n0q361w3n7aa2m20yjf"; depends=[countrycode dplyr httr jsonlite lifecycle lubridate memoise purrr R6 readxl rlang stringr tidyr tidyselect vroom xml2]; broken = true; }; covreg = derive2 { name="covreg"; version="1.0"; sha256="0v19yhknklmgl58zhvg4szznb374cdh65i7s8pcj2nwrarycwzaq"; depends=[]; broken = true; }; @@ -21977,6 +22357,7 @@ in with self; { cytoDiv = derive2 { name="cytoDiv"; version="0.5-3"; sha256="00c0gqgypywgbhavb15bvj6ijrk4b5zk86w85n9kwr4069b7jvwc"; depends=[GenKern plotrix]; broken = true; }; dagHMM = derive2 { name="dagHMM"; version="0.1.0"; sha256="1dw4clv2x71km1sqz1mydscwyj6y9yqx06v3rkmdz13qqcacfmhi"; depends=[bnclassify bnlearn future gtools matrixStats PRROC]; broken = true; }; dalmatian = derive2 { name="dalmatian"; version="1.0.0"; sha256="0hpyg8sl5v87l1hxax9sj863hy9njdyp7hnsaw3cida365p0dswa"; depends=[coda dglm dplyr ggmcmc rlang tidyr]; broken = true; }; + dampack = derive2 { name="dampack"; version="1.0.1"; sha256="0mh3x0xgcipbd9341x3sfapysrd9m8aaakc1f53vwjj31c8vayqc"; depends=[dplyr ellipse ggplot2 ggrepel mgcv reshape2 scales stringr triangle truncnorm]; broken = true; }; dapr = derive2 { name="dapr"; version="0.0.3"; sha256="136chxijyxrl5sbiggxf56zga26zqds647z1z2igwn5mdff1wxyb"; depends=[]; broken = true; }; darts = derive2 { name="darts"; version="1.0"; sha256="07i5349s335jaags352mdx8chf47ay41q7b0mh2xjwn2h9kzgqib"; depends=[]; broken = true; }; dash = derive2 { name="dash"; version="0.9.4"; sha256="1ggdfzlf7ayv2nc6qpmyrg3cx31cikhnv7smwpx6xlmj2sc75war"; depends=[assertthat base64enc brotli crayon digest fiery glue htmltools jsonlite magrittr mime plotly R6 reqres rlang routr]; broken = true; }; @@ -22005,6 +22386,7 @@ in with self; { deGradInfer = derive2 { name="deGradInfer"; version="1.0.1"; sha256="0yczn63fhpirvz1g1kq9q0m04sisflxxgxy70c87jyvrw12nfwss"; depends=[deSolve gdata gptk]; broken = true; }; deTestSet = derive2 { name="deTestSet"; version="1.1.7.4"; sha256="0cknv6d37vxfpvnckhgyrg5bw7i18gj85pyrrdyl5fxsqkqwk6ni"; depends=[deSolve]; broken = true; }; deamer = derive2 { name="deamer"; version="1.0"; sha256="1xbxr78n6s1yhf192ab4syi1naqlwl9z4cxzchrkw80q7bxqfiz8"; depends=[]; broken = true; }; + deconstructSigs = derive2 { name="deconstructSigs"; version="1.8.0"; sha256="014x0nb23jb98666kaav2phkvmkr38pi38jv0dqd4jv7zp0gdf1a"; depends=[BSgenome BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb reshape2]; broken = true; }; deepboost = derive2 { name="deepboost"; version="0.1.6"; sha256="1nf9gjk9gjl2dz7cr3vh5lg8nxkbqwr82a132nw853axbdgbs9ga"; depends=[Rcpp]; broken = true; }; define = derive2 { name="define"; version="0.2.9"; sha256="0sq7ryiz1py0yw7g2bncd834zsdiy1y7rck8k4grrx2ips5gv2jy"; depends=[encode Hmisc latexpdf SASxport spec]; broken = true; }; defm = derive2 { name="defm"; version="0.1-1"; sha256="1pq89pma7gmahjhd6l5cjxd1768v7xjnv206ghls8w495xnl6qjs"; depends=[Rcpp]; broken = true; }; @@ -22023,6 +22405,7 @@ in with self; { dfexplore = derive2 { name="dfexplore"; version="0.2.1"; sha256="04nbhn59l1kas26nwj4qflkjvvr33sj1mm7zg7fhvya85gvlhrbf"; depends=[ggplot2]; broken = true; }; dfpk = derive2 { name="dfpk"; version="3.5.1"; sha256="010rlxj66ar3y61fnm7ys3p6aimlr8ylqq4q4flzr9m88klz8701"; depends=[BH dfcrm ggplot2 PK Rcpp RcppEigen rstan StanHeaders]; broken = true; }; dhReg = derive2 { name="dhReg"; version="0.1.1"; sha256="0cfiy0wwd9b6h1qs6nw2m29zc3j2qqcybf879s5zbgnyxzp2ga2w"; depends=[forecast future future_apply testthat]; broken = true; }; + dhis2r = derive2 { name="dhis2r"; version="0.1.1"; sha256="019qrkcssxmvmhla3vfjq9m0vwv9j9h7njr2sjpmk4cqcdxvcbjn"; depends=[attempt curl dplyr httr2 R6]; broken = true; }; dialectR = derive2 { name="dialectR"; version="1.0"; sha256="11fd2fdxczlcxkk3pwhiw0vb51bndh9qcfp7pqcfj1z7aga52xk0"; depends=[deldir dplyr dtw ggplot2 ggvoronoi Rcpp RcppProgress reticulate sf tibble]; broken = true; }; dicionariosIBGE = derive2 { name="dicionariosIBGE"; version="1.6"; sha256="1rss1ydhcn6sma2lmlpq6s0h3dglwc20w499x1jzkcjnzc1rc7gl"; depends=[]; broken = true; }; dief = derive2 { name="dief"; version="1.2"; sha256="1i4icdfqvw7imaj1fh392zmzfyz8aqlv9s5naqxm1pm0lqfxl6ca"; depends=[flux fmsb ggplot2 plyr]; broken = true; }; @@ -22033,10 +22416,11 @@ in with self; { diffusr = derive2 { name="diffusr"; version="0.1.4"; sha256="1f3h387kblw1xzdnxphwgfl1n7f6i07kk7kfslvbfxkalbish6ii"; depends=[igraph Rcpp RcppEigen]; broken = true; }; dils = derive2 { name="dils"; version="0.8.1"; sha256="1q6ba9j14hzf7xy895mzxc6n9yjgind55jf350iqscwzxf7ynp33"; depends=[igraph Rcpp]; broken = true; }; dimensionalAnalysis = derive2 { name="dimensionalAnalysis"; version="0.1.0"; sha256="0pzncdrphnldgpvkm847wr6yrk30p1ayfwjlrg44kxackpl1w1y8"; depends=[caracas hash reticulate]; broken = true; }; - disastr_api = derive2 { name="disastr.api"; version="1.0.5"; sha256="1h5i6pwak16w0gdk8qjz4w9qpffjhzlsrvjkb4acrvgjgrsvz9kp"; depends=[httr jsonlite]; broken = true; }; discgolf = derive2 { name="discgolf"; version="0.2.0"; sha256="07clh1awnibgrh7vl4a51r8dbya2rbmicm8v8x8mq8h8am2b3j0s"; depends=[crul jsonlite xml2]; broken = true; }; disco = derive2 { name="disco"; version="0.6"; sha256="1abvhf0yb4mw02j1krjb7q68jpwdnl2narcalf3vkjcbflcp76z3"; depends=[ggplot2 RColorBrewer tmod]; broken = true; }; discreteMTP = derive2 { name="discreteMTP"; version="0.1-2"; sha256="13qsf1kc3rph0kkdkz31qj072www5dwjyk73lfpy141rzhcn1v1x"; depends=[]; broken = true; }; + discreteRV = derive2 { name="discreteRV"; version="1.2.2"; sha256="1lhf67cccr96zl3j1sysh2bv0pbgvkbgjdzm35fvrdm7k74ypjsi"; depends=[MASS plyr]; broken = true; }; + discretecdAlgorithm = derive2 { name="discretecdAlgorithm"; version="0.0.7"; sha256="01x3qfjj7dwv0m9q8zdhfrpbj9ys9y5p7d3z8ywjrqy4jw88svjs"; depends=[igraph Rcpp RcppEigen sparsebnUtils]; broken = true; }; diseq = derive2 { name="diseq"; version="0.4.6"; sha256="0j8xx40qs62ky5wrc4zymsfai2aqh2n3fcd17648n56d7m2p274x"; depends=[bbmle dplyr Formula magrittr MASS Rcpp RcppGSL RcppParallel rlang systemfit tibble tidyr]; broken = true; }; diskImageR = derive2 { name="diskImageR"; version="1.0.0"; sha256="1r19k5fdjn6vkn11p5df77fnxfqaz3nciiaai0f3pr2bgpfppzka"; depends=[subplex zoo]; broken = true; }; displayHTS = derive2 { name="displayHTS"; version="1.0"; sha256="0mqfdyvn2c5c3204ykyq29ydldsq0kb3a1d7mrzqr7cvrj1ahlqa"; depends=[]; broken = true; }; @@ -22050,6 +22434,7 @@ in with self; { dmdScheme = derive2 { name="dmdScheme"; version="1.3.5"; sha256="0q7jnbk2ymm0vb0yk5xpg8krsj4gs8dcp7qg0pp1z74x635biqhz"; depends=[digest knitr magrittr rappdirs readxl rlang rmarkdown stringr writexl xml2 yaml]; broken = true; }; dmt = derive2 { name="dmt"; version="0.8.20"; sha256="0rwc8l9k2y46hslsb3y8a1g2yjxalcvp1l3v7jix0c5kz2q7917w"; depends=[MASS Matrix mvtnorm]; broken = true; }; dna = derive2 { name="dna"; version="2.1-2"; sha256="0l7i9640yd25cbxd3vbmlsqgk3pi2f7v6g5q0lrgycxl7jla9v1k"; depends=[]; broken = true; }; + dnapath = derive2 { name="dnapath"; version="0.7.4"; sha256="1xpx981sws51kyryc2frsn9ppd55xbkz0rz9v5qbxc3rhpa8f01g"; depends=[corpcor curl dplyr ggplot2 gtools igraph Rcpp RcppArmadillo Rdpack SeqNet tibble wCorr]; broken = true; }; dnet = derive2 { name="dnet"; version="1.1.7"; sha256="05mqgp8x2h6vjf8j9466kpng7bbga134c2y808qgdmjdnv9fcaxc"; depends=[graph igraph Matrix Rgraphviz supraHex]; broken = true; }; doMIsaul = derive2 { name="doMIsaul"; version="1.0.1"; sha256="17a363gj8hsdpga6b07c4lzrswgf553dfqxacv2jfx0rswxnrsb0"; depends=[aricode arules clusterCrit dplyr ggplot2 Gmedian MASS mice NbClust ncvreg plyr scales survival withr]; broken = true; }; docket = derive2 { name="docket"; version="1.20"; sha256="104v18dqhw1npxyhrmpwvvnlmv9n67gh0pfv4983gmzalbka9xk9"; depends=[stringr XML xml2 zip]; broken = true; }; @@ -22069,8 +22454,10 @@ in with self; { drmdel = derive2 { name="drmdel"; version="1.3.2"; sha256="1772fxm3qs01h14qklp2rawcdm0vmjmb2mi62v1zl1hbxisnfq4s"; depends=[]; broken = true; }; dropR = derive2 { name="dropR"; version="0.1"; sha256="0sw5lqlfdn64dbykxdhk1pz18f83if871vkapa2nxgcfiy79b0vs"; depends=[plyr shiny]; broken = true; }; dse = derive2 { name="dse"; version="2020.2-1"; sha256="170rxrniszs8h59ah4mn4mz8d7kzix4g3vlz4icd8w6bl40c6ykc"; depends=[setRNG tfplot tframe]; broken = true; }; + dsfa = derive2 { name="dsfa"; version="2.0.2"; sha256="1fsq3ydphgi9b97fr92y2d5fc34rf4raff6ki1d3aqn210h9d53z"; depends=[copula gratia mgcv Rcpp RcppArmadillo Rdpack]; broken = true; }; dtree = derive2 { name="dtree"; version="0.4.2"; sha256="1cpv0pyf515610djxzfw1c83p3alk5a93clg4x9gk7a7qy4cyhr1"; depends=[caret evtree party partykit rpart]; broken = true; }; dtwSat = derive2 { name="dtwSat"; version="1.0.0"; sha256="04bmic5qxz8ka6gn7npixcgky1vyf4jaq48i6h4cc34n9wwhzi4a"; depends=[ggplot2 mgcv proxy sf stars tidyr twdtw]; broken = true; }; + dual_spls = derive2 { name="dual.spls"; version="0.1.4"; sha256="1ap4wngcakfr7q5jji63zlmbz3xw02chbqj4kwg9v9g0bq90y7k4"; depends=[pdist]; broken = true; }; dummies = derive2 { name="dummies"; version="1.5.6"; sha256="01f84crqx17xd6xy55qxlvsj3knm8lhw7jl26p2rh2w3y0nvqlbm"; depends=[]; broken = true; }; durmod = derive2 { name="durmod"; version="1.1-4"; sha256="0d721sbxjfh00gpxd4hj8iq04awfd0pcd6bw8cv7kny21l2f3w44"; depends=[data_table mvtnorm nloptr numDeriv Rcpp]; broken = true; }; dycdtools = derive2 { name="dycdtools"; version="0.4.3"; sha256="06hm00mfkkg5yxpf30xb4i21bna0hpa0g86vx9qz9vf7f7cvdwjx"; depends=[dplyr ggplot2 lubridate ncdf4 R_utils RColorBrewer tidyr]; broken = true; }; @@ -22096,10 +22483,12 @@ in with self; { eel = derive2 { name="eel"; version="1.1"; sha256="0cv6dhw57yy140g73z94g9x1s42fpyfliv9cm2z1alm7xwap1l0x"; depends=[emplik rootSolve]; broken = true; }; effectFusion = derive2 { name="effectFusion"; version="1.1.3"; sha256="0653857zgfv2lrksja6k9i7m2jn3ha4lri6mlmcn6fgxkmr54bgw"; depends=[bayesm cluster ggplot2 GreedyEPL gridExtra MASS Matrix mcclust]; broken = true; }; eflm = derive2 { name="eflm"; version="0.3.0"; sha256="0pl1z0yy257x4yhy2m7w6xkicr2a5b37rdsrf7a5ramk7z2nvs4m"; depends=[tibble]; broken = true; }; + efreadr = derive2 { name="efreadr"; version="0.2.2"; sha256="1h27by1m451wrnw017005avs5yj3fjzrm2lq5153aqm1mbbxxwvs"; depends=[dplyr ensurer magrittr readr]; broken = true; }; efts = derive2 { name="efts"; version="0.9-0"; sha256="1cdn37sij3q73z9gal6x3nnnds55whfj5ywyww119hx092xcb2h4"; depends=[lubridate magrittr ncdf4 plyr stringr udunits2 xts]; broken = true; }; eiCompare = derive2 { name="eiCompare"; version="3.0.4"; sha256="15s75hy6dp7pqsp5rhh9lqyy8z8cd7gq4hxl08ah4jki82cf877d"; depends=[bayestestR coda data_table doSNOW dplyr ei eiPack foreach ggplot2 magrittr mcmcse overlapping purrr rlang sf stringr tidyr tidyselect wru]; broken = true; }; eigeninv = derive2 { name="eigeninv"; version="2011.8-1"; sha256="18dh29js824d7mrvmq3a33gl05fyldzvgi8mmmr477573iy9r30g"; depends=[]; broken = true; }; eigenprcomp = derive2 { name="eigenprcomp"; version="1.0"; sha256="156qyv7sl8nng55n3ay6dnpayyfrqv27ndz40xf4w92is9zmymy0"; depends=[]; broken = true; }; + elaborator = derive2 { name="elaborator"; version="1.1"; sha256="1kq3qqqywpzrk1ichsljvfijhsybmj7s0scmswmwi2crqi67gzp8"; depends=[bsplus dendextend dplyr forcats haven purrr RColorBrewer reshape2 rlang seriation shape shiny shinydashboard shinyWidgets tidyr]; broken = true; }; elasticIsing = derive2 { name="elasticIsing"; version="0.2"; sha256="1zjgvz7w5j06x2cd1fzjl85di95ah67m1lanw01kic2bvhfwfbn6"; depends=[cvTools glmnet magrittr qgraph reshape2]; broken = true; }; elbird = derive2 { name="elbird"; version="0.2.5"; sha256="1n9z71xii5kymrm5ar4gldz2czk8z94qzd2ms7fwk0cwynbdcc5k"; depends=[cpp11 dplyr matchr purrr R6 tibble vroom]; broken = true; }; elec_strat = derive2 { name="elec.strat"; version="0.1.1"; sha256="09196k5c3jsikh98d33bn70izwcbx0wb5ki9fv1ij0dw9mnv4c3p"; depends=[elec]; broken = true; }; @@ -22116,6 +22505,8 @@ in with self; { engsoccerdata = derive2 { name="engsoccerdata"; version="0.1.5"; sha256="06fdgjgnk4lwshrkd0jad411x5nz9sxlri9fdhxrf2dr2hik4l8q"; depends=[dplyr magrittr tidyr]; broken = true; }; ensModelVis = derive2 { name="ensModelVis"; version="0.1.0"; sha256="06nhk616h32225p65ms4k9ia5qwd7kngpa4z6hxzn9nzmiirma60"; depends=[dplyr forcats ggplot2 magrittr rlang tidyr]; broken = true; }; ensemblQueryR = derive2 { name="ensemblQueryR"; version="0.1.0"; sha256="0yz7c8lvy9hivm60brx72iph36jrx5d11i9fbdhbl2l3gi4w0fbd"; depends=[dplyr httr jsonlite magrittr purrr rlang tibble tidyr vroom xml2]; broken = true; }; + ensembleR = derive2 { name="ensembleR"; version="0.1.0"; sha256="0xvq1jlsp7gsk46i847nfvadxwlh09gi2rgwss2wf2xmh1855ray"; depends=[caret]; broken = true; }; + ensurer = derive2 { name="ensurer"; version="1.1"; sha256="1gbbni73ayzcmzhxb88pz6xx418lqjbp37sdkggbrxcyhsxpdkid"; depends=[]; broken = true; }; entcn = derive2 { name="entcn"; version="1.0.0"; sha256="0zwhhjrc24d3hr9494p9ayxlkd0g6jml9raxwv59mpvpprrasdws"; depends=[RYoudaoTranslate stringr]; broken = true; }; enviPick = derive2 { name="enviPick"; version="1.5"; sha256="04q6zwqq2ip8b8h2n1jpgx1bzcvi7lazljs0806wiakbc79x232p"; depends=[readMzXmlData shiny]; broken = true; }; envlpaster = derive2 { name="envlpaster"; version="0.1-2"; sha256="11a5n40k1ln5gxxvwq1vh4dhmhifhlm89hkhf36qnhj4bjh3v3y0"; depends=[aster aster2 caTools MASS]; broken = true; }; @@ -22129,12 +22520,13 @@ in with self; { epitopeR = derive2 { name="epitopeR"; version="1.0.0"; sha256="0zp23cm43j9mm1fvz65y3xgjy0bm2s5h02y046zx2akx24sh3fjh"; depends=[Biostrings dplyr fs httr janitor purrr readr rlang seqinr stringr tibble tidyverse]; broken = true; }; eqs2lavaan = derive2 { name="eqs2lavaan"; version="3.0"; sha256="1lj6jwkfd84h9ldb6l74lrx2pnsl1c0d7mnrcrjkska87djb2nzd"; depends=[lavaan stringr]; broken = true; }; eqtl = derive2 { name="eqtl"; version="1.1-7"; sha256="0xfr8344irhzyxs9flnqn4avk3iv1scqhzac5c2ppmzqhb398azr"; depends=[qtl]; broken = true; }; - equatiomatic = derive2 { name="equatiomatic"; version="0.3.1"; sha256="0gy1wy10zc7h7h1s0hwd545iv4af5x2g8pqsgzyryydd6426g2gj"; depends=[broom broom_mixed knitr shiny]; broken = true; }; ergm_userterms = derive2 { name="ergm.userterms"; version="3.10.0"; sha256="1aqrgdayh73dkr71gf8vawlj6qgv66pxr4klxgqb6ffan66b5p8g"; depends=[ergm network statnet_common]; broken = true; }; ergmclust = derive2 { name="ergmclust"; version="1.0.0"; sha256="18vx02vr2wi0gw09g4hxb8glf38y06v4a0c6q666qv8bgcb0pgkw"; depends=[igraph lda MASS quadprog Rcpp RcppArmadillo viridis]; broken = true; }; erpR = derive2 { name="erpR"; version="0.2.0"; sha256="1y6abc5fkcyyjh36maj1zbxppqzwd5wkvzvqahyvzsz5fqpjkcdx"; depends=[rpanel]; broken = true; }; erratum = derive2 { name="erratum"; version="2.2.0"; sha256="0id03wm8knll548ydwv3cpn282xvw05vyaih8jy6nlmlis18wybf"; depends=[R6 rlang]; broken = true; }; + errint = derive2 { name="errint"; version="1.0"; sha256="1ya7fsvwhmgxw87r32m4345n8pw2pbpv026xvml03s1kiam8qwbw"; depends=[rootSolve VGAM]; broken = true; }; errorizer = derive2 { name="errorizer"; version="0.2.1"; sha256="10p7ydm81x2gls0wn692llgj2rxhg4s96rv7gvihmgi5dflraypq"; depends=[]; broken = true; }; + esaBcv = derive2 { name="esaBcv"; version="1.2.1.1"; sha256="0d2z03jab1c59v9x0qfwbipf0zbdz7zqj96ndbs0wnpjpgrvcp1d"; depends=[corpcor svd]; broken = true; }; estout = derive2 { name="estout"; version="1.2"; sha256="0whrwlh4kzyip45s4zifj64mgsbnrllpvphs6i5csb7hi3mdb3i5"; depends=[]; broken = true; }; estudy2 = derive2 { name="estudy2"; version="0.10.0"; sha256="0axlhniir8sz06mn18y49q8np3rbx3jfnz410agfajqhq7b5m9s1"; depends=[curl matrixStats quantmod Rcpp zoo]; broken = true; }; ether = derive2 { name="ether"; version="0.1.6"; sha256="1f3phh5vdfvlxqrpzsn6ysz0q3mbhr862fzsd3sp8m8qhry86cbx"; depends=[dplyr httr jsonlite Rmpfr]; broken = true; }; @@ -22151,6 +22543,7 @@ in with self; { exp2flux = derive2 { name="exp2flux"; version="0.1"; sha256="1b3ychb4wcf6dbccx2ddms5xygdgc296cnw4474fm81yrfjznplv"; depends=[gage igraph sybil]; broken = true; }; expands = derive2 { name="expands"; version="2.1.3"; sha256="00zb57gmpj86c7rvpqywpn4c5wl51immps935n3hd2fyk73vqljh"; depends=[ape commonsMath flexclust flexmix gplots matlab moments NbClust plyr RColorBrewer rJava]; broken = true; }; expert = derive2 { name="expert"; version="1.0-0"; sha256="0y9vcigvzhymalpv31b9nvmr86z1dz7x29yj838vks0dsv23rgrf"; depends=[]; broken = true; }; + expertsurv = derive2 { name="expertsurv"; version="1.3.0"; sha256="0m8p902528z3ih0mzgds0jg8iv885279mmdpv0zhf2wc3hd99ri7"; depends=[abind BH dplyr flexsurv ggplot2 loo magrittr Rcpp RcppEigen RcppParallel Rdpack rlang rms rstan rstantools scales SHELF StanHeaders stringr survival tibble tidyselect]; broken = true; }; expose = derive2 { name="expose"; version="0.0.3"; sha256="0dlxlxm3g9d8vmgp13i1825z1jzah94ih1vyif46s43xq0nf9anj"; depends=[e1071 foreach gam ggplot2 glmnet Matrix nnet polspline RColorBrewer Rcpp repmis SuperLearner xgboost]; broken = true; }; expp = derive2 { name="expp"; version="1.2.5"; sha256="0hb4392biyy85gs7af4p9m7r51ijmqr7wp7c7b0i7lzdf1bnd7fz"; depends=[deldir rgeos sp spatstat_geom spdep]; broken = true; }; exptest = derive2 { name="exptest"; version="1.2"; sha256="0wgjg62rjhnr206hkg5h2923q8dq151wyv54pi369hzy3lp8qrvq"; depends=[]; broken = true; }; @@ -22173,7 +22566,6 @@ in with self; { factorEx = derive2 { name="factorEx"; version="1.0.1"; sha256="03dgxxykxgq63cgan5gy5vz4hnwqmg48z2wdv8f69mk9452mg9m2"; depends=[arm doParallel estimatr foreach genlasso igraph mvtnorm pbapply pbmcapply prodlim sandwich stringr]; broken = true; }; factorMerger = derive2 { name="factorMerger"; version="0.4.0"; sha256="127k5h1gbbnjr6gxgck2n9glvvwkd69xq7n6gzmrq8gszk8v1x5m"; depends=[agricolae colorRamps dplyr forcats formula_tools ggplot2 ggpubr knitr magrittr MASS mvtnorm proxy reshape2 scales survival]; broken = true; }; factorQR = derive2 { name="factorQR"; version="0.1-4"; sha256="1vl01fm5qfyhnqbl5y86vkr50b8cv07vzlqs3v6smqaqq6yp4lv4"; depends=[lattice]; broken = true; }; - factorplot = derive2 { name="factorplot"; version="1.1-2"; sha256="025lfk122w66yxym3njcpzwnbhg40xi7p1c9vnxczcb8kz31745s"; depends=[multcomp nnet]; broken = true; }; factualR = derive2 { name="factualR"; version="0.5"; sha256="1wz8ibcmilcx62yy29nd2i1pdmjf7fm0g9i5s58gdn8cjlhnw1jl"; depends=[RCurl RJSONIO]; broken = true; }; faisalconjoint = derive2 { name="faisalconjoint"; version="1.15"; sha256="08sb4za8qyadvigq2z7b0r44qk2lpahpnz9nv16xfjb1zhdkz5w3"; depends=[]; broken = true; }; fakeR = derive2 { name="fakeR"; version="1.0"; sha256="0f4ngnd8s34j1327zp3aqnsiw0gfxkp1i24ng20hrmfl13s1qmxp"; depends=[mvtnorm polycor pscl VGAM]; broken = true; }; @@ -22184,8 +22576,6 @@ in with self; { fastCorrDiff = derive2 { name="fastCorrDiff"; version="0.5"; sha256="0fis04xfarvmhpdkh7524ffga8f8svpcn3837rqwy0g039dcfa64"; depends=[irlba Matrix plyr RSpectra]; broken = true; }; fastHICA = derive2 { name="fastHICA"; version="1.0.2"; sha256="1h794ybbii0k7v3x0r1499zxdqa1i1dpi3i7idzqdrffnb5kmwlv"; depends=[energy fastICA]; broken = true; }; fastclime = derive2 { name="fastclime"; version="1.4.1"; sha256="0zcir8r11b2hxr9vvkmvxlzmhfcaxbr0wbjy86ysr912mp8fs9i3"; depends=[igraph lattice MASS Matrix]; broken = true; }; - fastcmprsk = derive2 { name="fastcmprsk"; version="1.1.1"; sha256="00jpmmlpldrqamgw7q7gx6s4rl1bxqlzw2jglw36k5zawcdb69y6"; depends=[dynpred foreach survival]; broken = true; }; - fastdigest = derive2 { name="fastdigest"; version="0.6-3"; sha256="02csl261v7nassi5119ygw6jglm8q6rssg7lgyxzj73mkyilm832"; depends=[]; broken = true; }; fasteraster = derive2 { name="fasteraster"; version="1.1.1"; sha256="1ycr2h046jds2758xvxn00rhglx3zarbzn3r38j66j5pnz2iiq4f"; depends=[Rcpp]; broken = true; }; fasthplus = derive2 { name="fasthplus"; version="1.0"; sha256="05j4lg1gkkz1vi99dx73igvk9xyrli8j6m4hzhpcnyhy0h9bxiqj"; depends=[]; broken = true; }; fastlogranktest = derive2 { name="fastlogranktest"; version="0.2.1"; sha256="1j5mgvi3nwnlarj31cknx2cikypql370qds2h0877vmm80942z25"; depends=[BH Rcpp]; broken = true; }; @@ -22202,13 +22592,16 @@ in with self; { feedeR = derive2 { name="feedeR"; version="0.0.10"; sha256="1p64c7ibwn6k5k3vsjxrcjr84czild7g8bqw0yv4axk52vk5jfkx"; depends=[digest dplyr lubridate readr stringr tibble xml2]; broken = true; }; fellov = derive2 { name="fellov"; version="0.1"; sha256="0z4b08ykajzwa5852dknqz5qqlmhklbwdq8x5zhyfmwba5zfbjav"; depends=[]; broken = true; }; ffbase = derive2 { name="ffbase"; version="0.13.3"; sha256="1dp6lblfq2j7r1b4b8ls47jlx8j27n88d5vp8w116lb8pa01zxmk"; depends=[bit fastmatch ff]; broken = true; }; + fflr = derive2 { name="fflr"; version="2.2.3"; sha256="1ib0lgkxxjrsvhl4h4dpyk9qzlsxz95ki0q5qy4flqdm28vl633z"; depends=[httr jsonlite tibble]; broken = true; }; ffmetadata = derive2 { name="ffmetadata"; version="1.0.0"; sha256="0gjv5fl3p0kz28c91l4qf34a2685a24l5841ixdg7wivfs5v9npv"; depends=[httr jsonlite]; broken = true; }; ffsimulator = derive2 { name="ffsimulator"; version="1.2.3"; sha256="0vl8sr32l5l4v6jb59ch98fg850d6w8zqqy2v8zay7v04qwbwqiz"; depends=[checkmate cli data_table ffscrapr glue magrittr nflreadr Rglpk rlang tidytable]; broken = true; }; + ffstream = derive2 { name="ffstream"; version="0.1.7.2"; sha256="0xc549sp443isn3rk96m28wsrsg66qzsvz51nx9bykjzi3zy5wjk"; depends=[Rcpp]; broken = true; }; fgac = derive2 { name="fgac"; version="0.6-1"; sha256="0paddf5a4w0g2i0ay7my0bppwh534d8ghy6csfxl5jj034xjgwkk"; depends=[]; broken = true; }; fgof = derive2 { name="fgof"; version="0.2-1"; sha256="0bclkb3as0fl2gyggqxczndfyj9pfnni5pa3inpn5msrnjg4g2j2"; depends=[mvtnorm numDeriv]; broken = true; }; fgpt = derive2 { name="fgpt"; version="2.3"; sha256="1d0qzsn4b68jhk07k97iv765jpmzzh1gwqpid0r76vg4cwqfs3n7"; depends=[]; broken = true; }; fidap = derive2 { name="fidap"; version="0.0.3"; sha256="0zq07395qx59xxb3cj5axhpkwnad2h88qbm3aan43q5cip9wi2bx"; depends=[httr jsonlite]; broken = true; }; fieldRS = derive2 { name="fieldRS"; version="0.2.3"; sha256="0jr2l5cnrawd6wibmb6r0sngd851z9mbz4mwprnbbqbv3hzzrpm9"; depends=[caret concaveman geosphere ggplot2 raster rgeos sp stringdist vegan]; broken = true; }; + filteRjsats = derive2 { name="filteRjsats"; version="1.0"; sha256="19zi44av3f5zahinqvgz5bvgh82qrpg4r4fffwjh8a09s975q5mg"; depends=[broman dplyr lubridate rerddap stringr tidyr]; broken = true; }; fipe = derive2 { name="fipe"; version="0.0.1"; sha256="055jav8h4wws76jahm2d5dj49wkvzchh3f2vk5d50pny4dc7smar"; depends=[dplyr forcats furrr future httr jsonlite lubridate magrittr purrr readr stringr tibble tidyr]; broken = true; }; fisheyeR = derive2 { name="fisheyeR"; version="0.9"; sha256="1w6va7gakqq2q8hsvdszpn8s2ysdfc648bk5p5v3wbl5s403bci8"; depends=[tkrplot]; broken = true; }; fishflux = derive2 { name="fishflux"; version="0.0.1.6"; sha256="0n2lqx995w3vy0kq45kh8n79wbg2lsa12mar03kr2vc65acys6j2"; depends=[BH curl dplyr fishualize ggplot2 httr plyr Rcpp RcppEigen RcppParallel rfishbase rstan rstantools StanHeaders tidybayes tidyr]; broken = true; }; @@ -22233,8 +22626,8 @@ in with self; { foster = derive2 { name="foster"; version="0.1.1"; sha256="1gkn3mgxsq3p7nazw80z61yhc1dqxhjvd667xklpjka4rrk2am8p"; depends=[caret data_table dplyr randomForest raster reshape2 rgdal RStoolbox sp spatstat spatstat_geom trend yaImpute]; broken = true; }; fpca = derive2 { name="fpca"; version="0.2-1"; sha256="13b102026xlfb7c2rb3xsqsymm7xpmaxppaafjkb5dx0b1lz0jrc"; depends=[sm]; broken = true; }; fpmoutliers = derive2 { name="fpmoutliers"; version="0.1.0"; sha256="108bp3smk9jnckd5237xly4ywmal03rq1kidq5z61l6zrhc3yfh9"; depends=[arules doParallel foreach Matrix pmml pryr R_utils XML]; broken = true; }; + frailtypack = derive2 { name="frailtypack"; version="3.6.0"; sha256="03hm6kala923fr02sjmysm2ycxbynsp3h43f8mlw8agi52hf9nz2"; depends=[boot doBy MASS nlme rootSolve shiny statmod survC1 survival]; broken = true; }; frambgrowth = derive2 { name="frambgrowth"; version="0.1.0"; sha256="1xmy1zxp7aa2n8frlxhn1bl41zda1jldvvxb3q41yam3pslc8m1q"; depends=[]; broken = true; }; - freesurfer = derive2 { name="freesurfer"; version="1.6.8"; sha256="0ks6ms5vp38pykcg66w960nmfgq383iprrbbzw5dlx9xnrx4yhbh"; depends=[neurobase R_utils reshape2]; broken = true; }; frm = derive2 { name="frm"; version="1.2.2"; sha256="1dl0vca9r2dams99sc13pfpi0b3yb02x59f4c1jz07zz005c8l23"; depends=[]; broken = true; }; frmhet = derive2 { name="frmhet"; version="1.1.3"; sha256="07sgsfhzrci8g1b0gicjfca1mgd8ppfqpkpp4q9bdxnjvdvlf45s"; depends=[]; broken = true; }; frmpd = derive2 { name="frmpd"; version="1.1.0"; sha256="0irgqdr0vr8k408lsxcrjkjbjvqvmy5mnjw9c1ghs86isrp5mciz"; depends=[]; broken = true; }; @@ -22246,12 +22639,12 @@ in with self; { fugeR = derive2 { name="fugeR"; version="0.1.2"; sha256="0kd90s91vzv0g3v9ii733h10d8y6i05lk21p5npb3csizqbdx94l"; depends=[Rcpp snowfall]; broken = true; }; fulltext = derive2 { name="fulltext"; version="2.0"; sha256="104wkas9azyb2drfaz1hrgbx2ilbb0k2mb8411l10rsbkqva099f"; depends=[aRxiv crul data_table digest fauxpas hoardr jsonlite magrittr microdemic pdftools rcrossref rentrez rplos storr tibble xml2]; broken = true; }; funHDDC = derive2 { name="funHDDC"; version="2.3.1"; sha256="1fd3n3y5icm2lcdz5jzfybbbmmzbbgq949x1g4bx4s0h0dnc0rkk"; depends=[fda MASS]; broken = true; }; - funModeling = derive2 { name="funModeling"; version="1.9.4"; sha256="1zhmazw77phcdwj9wwxpwjfhwd8wyjc538acqiwq9f6sz8fw1cbb"; depends=[cli dplyr entropy ggplot2 gridExtra Hmisc lazyeval moments pander RColorBrewer reshape2 ROCR scales stringr]; broken = true; }; functClust = derive2 { name="functClust"; version="0.1.6"; sha256="0mdfxvrx3wk497a9bbkwnzbm6hm2s4wqs3h09m3hj48ybpqmhz9i"; depends=[clusterCrit multcompView]; broken = true; }; futile_paradigm = derive2 { name="futile.paradigm"; version="2.0.4"; sha256="14xsp1mgwhsawwmswqq81bv6jfz2z6ilr6pmnkx8cblyrl2nwh0v"; depends=[futile_options RUnit]; broken = true; }; futureheatwaves = derive2 { name="futureheatwaves"; version="1.0.3"; sha256="122b2z86bzxfch67y6cpq8wj62mw0dgkzbmnpwi247kdx7w5mw1f"; depends=[data_table dplyr ggplot2 ggthemes leaflet Rcpp stringr tidyr]; broken = true; }; fuzzyFDR = derive2 { name="fuzzyFDR"; version="1.0"; sha256="0zd8i9did0d9gp42xjmwrccm32glabvvy08kl8phhwb1yaq53h7w"; depends=[]; broken = true; }; fwi_fbp = derive2 { name="fwi.fbp"; version="1.7"; sha256="1wk9cr0kk6zkbf111bv87n7b1wwx1qrsbjxydvbjvy8bgz0nfa62"; depends=[]; broken = true; }; + fwildclusterboot = derive2 { name="fwildclusterboot"; version="0.13.0"; sha256="0slm28pgvfsrsdvz2i1h231gkf4iq6gdlspyzppn8nwhngvic5hd"; depends=[collapse dqrng dreamerr Formula generics gtools JuliaConnectoR MASS Matrix Rcpp RcppArmadillo RcppEigen rlang summclust]; broken = true; }; g2f = derive2 { name="g2f"; version="0.2"; sha256="1jsmiv6v8ilpxg1k1npcgqa467hpyw7mzh5m8dp7bxar4j5npsp4"; depends=[KEGGREST minval sybil]; broken = true; }; g3viz = derive2 { name="g3viz"; version="1.1.5"; sha256="0pjn1rgqbrkbdrcnf01j9lm3257fnp7b0p5p3hyhg8srd990wp61"; depends=[cBioPortalData htmlwidgets jsonlite stringr]; broken = true; }; gDefrag = derive2 { name="gDefrag"; version="0.3"; sha256="016vpj03drygxsa06jin225rfgjvjm938x65990ms15xcwrgv8nb"; depends=[igraph maptools rgdal rgeos sp]; broken = true; }; @@ -22261,27 +22654,30 @@ in with self; { gWidgets2RGtk2 = derive2 { name="gWidgets2RGtk2"; version="1.0-7"; sha256="14c933j0wj3lb5da75zxg3w3mfqh0nqk8rczbi4dnqd8sna6jks9"; depends=[gWidgets2 memoise RGtk2]; broken = true; }; gameofthrones = derive2 { name="gameofthrones"; version="1.0.2"; sha256="10ns4yl1s8adlf334gl8yararj1fpxbg3gy7h69s554m4h878awk"; depends=[ggplot2 gridExtra MASS]; broken = true; }; games = derive2 { name="games"; version="1.1.2"; sha256="01hbbr2hsxi5j9axpdl0jihpd55pa9hacjxmab8p7cixk3xqqqbf"; depends=[Formula MASS maxLik stringr]; broken = true; }; - gamlss_ggplots = derive2 { name="gamlss.ggplots"; version="2.1-2"; sha256="0b205awv7abl1jv2gg2ki2xdz91i0xikvixgygwjmwz6vri0p7zx"; depends=[ellipse foreach gamlss gamlss_dist gamlss_foreach gamlss_inf ggplot2 ggridges mgcv]; broken = true; }; gamlss_nl = derive2 { name="gamlss.nl"; version="4.1-0"; sha256="083l5lsb0csxcp4vffvdv2nr7jk3s2gkcavx66m8inzw16j7xilz"; depends=[gamlss survival]; broken = true; }; gamm4_test = derive2 { name="gamm4.test"; version="0.1.0"; sha256="0ab6rksr88fsv6whp6cxyshpv5ixmf9lw51cl3rzk870r8q326wg"; depends=[doParallel foreach gamm4 Matrix mgcv plotly RColorBrewer]; broken = true; }; - gamma = derive2 { name="gamma"; version="1.0.4"; sha256="02qdv1kzz1pw07zksxl97ra4wd15xgdzfaq9qfwfcci67xmx88ap"; depends=[ggplot2 IsoplotR rlang rxylib]; broken = true; }; ganalytics = derive2 { name="ganalytics"; version="0.10.7"; sha256="03jf7325cgg5p6lzcrzzzx0b40vf3l5vhw95lih098kpmlr1zadf"; depends=[assertthat googleAnalyticsR httpuv httr jsonlite lazyeval lubridate plyr R6 rvest scales selectr stringr tibble XML xml2]; broken = true; }; garchmodels = derive2 { name="garchmodels"; version="0.1.1"; sha256="1nmhsxhfbp7jn85jwnhm4p5kl0jc5n1bjwwwpia774ycr6krazwn"; depends=[dials dplyr magrittr parsnip purrr rlang rmgarch rugarch stringr tibble tidyr]; broken = true; }; gazepath = derive2 { name="gazepath"; version="1.3"; sha256="1sv0vdwzmvpnj2k8lphnf4y12fi5md0j2725fjkv1n7a3dkd6faa"; depends=[jpeg scales shiny sp zoo]; broken = true; }; + gdalBindings = derive2 { name="gdalBindings"; version="0.1.17"; sha256="1z4n9113by1igd9kpmvjll7rp3hf2ijgrrvc1p8l43595546fcp2"; depends=[data_table R6 Rcpp]; broken = true; }; gdalUtils = derive2 { name="gdalUtils"; version="2.0.3.2"; sha256="0krapdy50nd5dvcdflz39dzxpig3zklng3hgxavqg2nvwazalvsc"; depends=[foreach R_utils raster rgdal sp]; broken = true; }; gdmp = derive2 { name="gdmp"; version="0.2.0"; sha256="0fy8x9l6swrb78apwq9d9msz2y8dkfd2fkyp1pkmzxwdb85lmcdm"; depends=[]; broken = true; }; gdns = derive2 { name="gdns"; version="0.5.0"; sha256="1bicimkxsyfg9yqaikapwlv8x9xdvsb00fqnfka07i6b63109sxh"; depends=[httr jsonlite magrittr stringi tinytest]; broken = true; }; geckor = derive2 { name="geckor"; version="0.2.0"; sha256="06infn0icgsa10szsc8bqams57swx6a4ch3a1n2a68rp8q2f6lw2"; depends=[curl dplyr httr jsonlite knitr lifecycle magrittr rlang tibble tidyr tidyselect]; broken = true; }; + gemlog = derive2 { name="gemlog"; version="0.41"; sha256="16pdhpx21avxjrawj7i47dxzz2wfhabzz5x3nln2pwaz5b147syz"; depends=[signal]; broken = true; }; genasis = derive2 { name="genasis"; version="1.0"; sha256="1r0733cc2hss3f8dp19s1ji55yp72mds7p3x1zvvpiks2r7w712p"; depends=[fitdistrplus Kendall]; broken = true; }; gencve = derive2 { name="gencve"; version="0.3"; sha256="00wbmaffm7mbfv3zl6mb24w1df1a8p24girwdh3a522lw3045iwf"; depends=[C50 class e1071 glmnet lars MASS nnet plus randomForest rpart]; broken = true; }; geneListPie = derive2 { name="geneListPie"; version="1.0"; sha256="0z2gawfzhm05dafj4zlj6ifmf0dy7p1hrpa59lzxrnrc0wr6laji"; depends=[]; broken = true; }; geneNetBP = derive2 { name="geneNetBP"; version="2.0.1"; sha256="0sp1chyln5k2zsq7cdhvrqxwr2nhrll1pdl1l5g6fd4gjl2m1nwk"; depends=[bnlearn ggm gRain graph igraph Rgraphviz scales]; broken = true; }; geneSignatureFinder = derive2 { name="geneSignatureFinder"; version="2014.02.17"; sha256="1s9jj87wnzzgm9hnws09yhrxdlb6jw56i3ddwznvmh8vpzrspv4h"; depends=[class cluster survival]; broken = true; }; + genetic_algo_optimizeR = derive2 { name="genetic.algo.optimizeR"; version="0.2.6"; sha256="08jc17nwvycfgkzqisgyj741ykwsm0q8kh3f464zzwp5s6612ajy"; depends=[biocViews dplyr ggplot2 magrittr rsconnect stringr tinytex]; broken = true; }; genius = derive2 { name="genius"; version="2.2.3"; sha256="03j6yry39nn8bccrnwjx1y36rdw167gjlkzl56g5lqwbrgx26bqy"; depends=[dplyr magrittr purrr reshape2 rlang rvest stringr tibble tidyr tidytext]; broken = true; }; genomeplot = derive2 { name="genomeplot"; version="1.0"; sha256="15v01ngxq7kxav1bhw1mvqradrmvwsad5xh9l5skivb5smh9795w"; depends=[ggplot2]; broken = true; }; genotypeR = derive2 { name="genotypeR"; version="0.0.1.8"; sha256="1kwzjn6hrnfizs44cz4a8qa4mdhdzqssc4axx0s6vngmkmsrffig"; depends=[colorspace doBy plyr reshape2 zoo]; broken = true; }; geodetector = derive2 { name="geodetector"; version="1.0-4"; sha256="00zyx68jjl4mldah8mxfvwvv5yfkd4f1s2rlx6fsw6h8y2cwzj3l"; depends=[maptools rgdal rgeos sp]; broken = true; }; geofabrik = derive2 { name="geofabrik"; version="0.1.0"; sha256="0k92gmivccw3kbgkb9bjw7pxc4zc3zdj35x0cbzmjq0k3qxq8ad0"; depends=[]; broken = true; }; + geofd = derive2 { name="geofd"; version="2.0"; sha256="1rsgy4nxfp1gi4vwh8zfzksr6sr2ga31kmd56q5m56gw530570ra"; depends=[fda]; broken = true; }; + geohabnet = derive2 { name="geohabnet"; version="2.1.2"; sha256="03d1zv8p5d75qj42g4xfq4fhif304a1wfkcggib5xqwkj5zkqabs"; depends=[beepr config easycsv future future_apply geodata geosphere igraph magrittr memoise rlang rnaturalearth stringr terra viridisLite yaml]; broken = true; }; geojsonlint = derive2 { name="geojsonlint"; version="0.4.0"; sha256="0l6xlf6l9shyvdd2ghkhcgbkxpmycapfpxakzbvd92j1x8dmr9az"; depends=[crul jsonlite jsonvalidate V8]; broken = true; }; geoknife = derive2 { name="geoknife"; version="1.6.11"; sha256="0396ms1yrmih1s5rppiifq6j50lmmzdyjvlbhk48xkw4ahzq5cmm"; depends=[curl httr progress sf whisker xml2]; broken = true; }; geomedb = derive2 { name="geomedb"; version="2.0.1"; sha256="1l35c9x1mhqd7z5ragd7w3ay8v2fdnbmbfx9grwi622j8yz1fbmq"; depends=[ape httr jsonlite]; broken = true; }; @@ -22297,6 +22693,7 @@ in with self; { getlandsat = derive2 { name="getlandsat"; version="0.2.0"; sha256="15450v93lc4i2qda0zlb5vplwbarkmf3f6sb4rlrdpv9vlj85hff"; depends=[crul data_table rappdirs readr tibble xml2]; broken = true; }; getpublist = derive2 { name="getpublist"; version="0.1.0"; sha256="0p6l7qha6i7vhqvav74yxpa6qph35g41v00173mjjqsvyhd0qc5i"; depends=[dplyr magrittr rvest stringr tibble tidyr xml2]; broken = true; }; gfmR = derive2 { name="gfmR"; version="1.1-0"; sha256="0qzzbcra1fnbp0h31b1as20yhmqmi7p62xrhikj64an9avg9b277"; depends=[faraway nnet]; broken = true; }; + gfpop = derive2 { name="gfpop"; version="1.1.1"; sha256="0jm7ri25qhkc80s4vfz2p9516m7wl0x8fcci6mggm4mc4ksx78f4"; depends=[Rcpp]; broken = true; }; ggDCA = derive2 { name="ggDCA"; version="1.1"; sha256="0jpg7n6nk2jgq668ff0l9zk26zk39abc74f6w5x8gf4zsb8y0zp9"; depends=[base_rms do ggplot2 rms set survival]; broken = true; }; ggROC = derive2 { name="ggROC"; version="1.0"; sha256="0p9gdy7ia59d5m84z9flz5b03ri7nbigb3fav2v2wrml300d24vn"; depends=[ggplot2]; broken = true; }; ggasym = derive2 { name="ggasym"; version="0.1.6"; sha256="1vgsqq2m4w5clmf27mmj6jqn2s8m1izz3gj2bxqpmdcvzf5vxkgr"; depends=[dplyr ggplot2 magrittr purrr rlang scales stringr tibble tidyr]; broken = true; }; @@ -22305,12 +22702,13 @@ in with self; { ggcoverage = derive2 { name="ggcoverage"; version="0.7.1"; sha256="088gyc6054d8xx3k3pg5i40cnvyryyq4k6rn214li0yslj3fphyi"; depends=[Biostrings BSgenome dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggbio ggh4x ggplot2 ggrepel IRanges magrittr patchwork RColorBrewer reshape2 rlang Rsamtools rtracklayer S4Vectors scales seqinr]; broken = true; }; ggfan = derive2 { name="ggfan"; version="0.1.3"; sha256="1p3hbznpsaznlk0lnjyazc130www0p5919qplg3kspng7qh8p22w"; depends=[colorspace dplyr ggplot2 rstan]; broken = true; }; ggguitar = derive2 { name="ggguitar"; version="0.1.1"; sha256="1lmfs54h91gzcxin37v4flkywbq3fs648mm1h9ak03xlj5nagzsi"; depends=[dplyr ggplot2 gridExtra lazyeval readr tibble]; broken = true; }; + gghdr = derive2 { name="gghdr"; version="0.2.0"; sha256="1id0ky2mf656xqsmg76f627zw8iff4q1wzgih32nryk0hfvm2gfi"; depends=[digest farver ggplot2 hdrcde scales tibble]; broken = true; }; gglogo = derive2 { name="gglogo"; version="0.1.5"; sha256="08wg0svcksdzchp6bdllmsnklxia3d0ygqwzgmqb2sga8nbkf5hl"; depends=[dplyr ggplot2 jpeg knitr magrittr plyr purrr reshape2 rlang tidyr]; broken = true; }; ggloop = derive2 { name="ggloop"; version="0.1.0"; sha256="0jpbgb16jfsv557zvishln98y7nd6p1ryp6hxkrkmhp9p35vzvc0"; depends=[assertthat ggplot2 lazyeval magrittr plyr]; broken = true; }; ggmotif = derive2 { name="ggmotif"; version="0.2.1"; sha256="1pqkl5zw4v6b81nbxcrpz44sjs4j65iw23j9xiy4d7yqj1bx7604"; depends=[ape cowplot data_table dplyr ggplot2 ggsci ggtree magrittr memes patchwork stringr tidyverse treeio universalmotif XML]; broken = true; }; ggpacman = derive2 { name="ggpacman"; version="0.1.0"; sha256="1040d6aciyllrpszh7l7y55fw4dx8cya2yvj0x4i2fibvygz83p6"; depends=[dplyr gganimate ggforce ggplot2 magrittr purrr rlang tidyr]; broken = true; }; + ggparliament = derive2 { name="ggparliament"; version="2.0.0"; sha256="04za4lm3lir95bgda1rzlsyil2fkac3j5f5f1pjw2samy6pjz80r"; depends=[dplyr ggplot2 rlang]; broken = true; }; ggsn = derive2 { name="ggsn"; version="0.5.0"; sha256="04vnap83w06hbqqi5kgxmrdb3a13n5mcdk5lllymv6nrzvl84f2x"; depends=[ggmap ggplot2 maptools png sf]; broken = true; }; - ggtikz = derive2 { name="ggtikz"; version="0.1.2"; sha256="00l91sw6h8h7wvzj6nn30q7rniw8kb0pxrvy4xah5bhb44iz7gmk"; depends=[dplyr ggplot2 stringr tikzDevice]; broken = true; }; ggvoronoi = derive2 { name="ggvoronoi"; version="0.8.5"; sha256="0q02r0nql64am6ixjq59fjn2kzsj2is22ys1j1rzscwkh9f6f17m"; depends=[deldir ggplot2 raster rgeos sp]; broken = true; }; ghee = derive2 { name="ghee"; version="0.1.0"; sha256="0b3czx2ibi5p8xl7i36zxnab032vrkh5bv204r7wgg1xpx8pdlra"; depends=[gh jsonlite]; broken = true; }; gibbs_met = derive2 { name="gibbs.met"; version="1.1-3"; sha256="1yb5n8rkphsnxqn8rv8i54pgycv9p7x1xhinx4l5wzrds3xhf2dc"; depends=[]; broken = true; }; @@ -22318,6 +22716,7 @@ in with self; { giftwrap = derive2 { name="giftwrap"; version="0.0.4"; sha256="1zsw529h69x9yaq2csfws4iqn3mm39z34kwzj0b2y850wzbn2dvp"; depends=[namespace processx readr tibble]; broken = true; }; giphyr = derive2 { name="giphyr"; version="0.2.0"; sha256="0273f7lama8bhaalafs66m6ksp32vx0j6rmh1qr4484i7wkmdfqn"; depends=[dplyr httr miniUI purrr rstudioapi shiny tibble]; broken = true; }; glacierSMBM = derive2 { name="glacierSMBM"; version="0.1"; sha256="0117fzz2b1lccs0kkwz59w2yysi72j54yvz7373pz11w7rjds84f"; depends=[raster sp udunits2]; broken = true; }; + glancedata = derive2 { name="glancedata"; version="1.0.1"; sha256="01j7syjn33pc7hq032nmyak38wn35yv3n7is9g2ggs14kj3xqb0c"; depends=[dplyr forcats GGally ggplot2 gridExtra openxlsx purrr tibble tidyr]; broken = true; }; glmdisc = derive2 { name="glmdisc"; version="0.6"; sha256="031rz3s5d7hz9fzmsj7aqhzwrn05rnfvk9292k2r0qpr6k02mk3b"; depends=[caret dplyr gam magrittr MASS nnet Rcpp RcppEigen RcppNumerical]; broken = true; }; glmdm = derive2 { name="glmdm"; version="2.60"; sha256="09vljki24fccqkvxkmg2i6a8pxqhfwm155b41m2q51lqaq29bfw7"; depends=[]; broken = true; }; glmmsr = derive2 { name="glmmsr"; version="0.2.3"; sha256="1fbg5zji0xjr9q1yc6phsp37nsrj7nfs8yiri0j9s84wzgwjili1"; depends=[BH lme4 Matrix numDeriv R6 Rcpp RcppEigen]; broken = true; }; @@ -22325,6 +22724,7 @@ in with self; { glrt = derive2 { name="glrt"; version="2.0"; sha256="0p2b0digndvnn396ynv56cdg436n3ll7pxkb81rs3dhwbyqyc948"; depends=[survival]; broken = true; }; gmat = derive2 { name="gmat"; version="0.2.2"; sha256="0iq2b3s60fyam45ykk67xyi2yhr8ma1s2vw4059357j1948525p2"; depends=[gRbase igraph]; broken = true; }; gmeta = derive2 { name="gmeta"; version="2.3-1"; sha256="02w3a8c189wdvcxsnclbgzb6bc9fq88rcw2danxa6i9g7q4kq2sp"; depends=[BiasedUrn binom]; broken = true; }; + gofastr = derive2 { name="gofastr"; version="0.3.0"; sha256="02jn4xbbafl7siwvkqns1818wmw813x9cvqfcnpnmcippiqhrb0b"; depends=[data_table quanteda slam SnowballC tm]; broken = true; }; goldi = derive2 { name="goldi"; version="1.0.1"; sha256="191ac02bwrxr3khq6qirhxzfhv7pqfhqyg7jb473p5vwygpvc53l"; depends=[dplyr futile_logger magrittr Rcpp RcppArmadillo SnowballC tm]; broken = true; }; goldilocks = derive2 { name="goldilocks"; version="0.3.0"; sha256="1h16kfalyklc7i3rix1ml83wjcbi9wv3z3rwxa83gp2h6nfpzpwl"; depends=[dplyr fastlogranktest pbmcapply PWEALL rlang survival]; broken = true; }; googlePrintr = derive2 { name="googlePrintr"; version="0.0.1"; sha256="19rm78x8qd61ilc6h1kn3dw63m6dfsckqkd3n76krvi0akgl72w5"; depends=[googleAuthR httr jsonlite]; broken = true; }; @@ -22339,13 +22739,13 @@ in with self; { graphscan = derive2 { name="graphscan"; version="1.1.1"; sha256="1dgjb0grdymhimdgwnddjcivgy2i9r1i1nni4v9mx0447skcahk9"; depends=[ape rgl snowfall sp]; broken = true; }; graphseg = derive2 { name="graphseg"; version="0.1.1"; sha256="0rgr9k0imif79prw5kkcnkpw3hx8ndzh1bvd0wxgqga8f9vr1cgk"; depends=[flsa igraph magrittr Matrix sf]; broken = true; }; graphx = derive2 { name="graphx"; version="1.0"; sha256="1k7vq0j58yskmaqknpkhccrc5n1hh8p2fsw7419r7k6a2c3syj8a"; depends=[cubature docore jpeg magicaxis MASS plotrix png pracma raster sp]; broken = true; }; - gratis = derive2 { name="gratis"; version="1.0.5"; sha256="05ac9rxzps2mal20xqwa937ybdgl73nngswvjxwya20pbwhz6l73"; depends=[doRNG dplyr foreach forecast GA generics magrittr mvtnorm polynom purrr shiny tibble tsfeatures tsibble]; broken = true; }; gremes = derive2 { name="gremes"; version="0.1.1"; sha256="1i3j23ssx0grkzq1qf4naiqrfd753m992pqhxy5y7c805acm77mj"; depends=[abind copula igraph mev mvtnorm quadprog]; broken = true; }; gren = derive2 { name="gren"; version="0.0.1"; sha256="1wb5wwdjxi7q36md7xzmbw5lrggcgghkz3pmxipjpxw8kfv804xp"; depends=[glmnet Iso pROC Rcpp RcppArmadillo]; broken = true; }; greyzoneSurv = derive2 { name="greyzoneSurv"; version="1.0"; sha256="115i0d4fy4p4g4vd419hj9f23hi8cbiyfilgpgmag91ilr1xpcdp"; depends=[Hmisc survAUC survival]; broken = true; }; groupRemMap = derive2 { name="groupRemMap"; version="0.1-0"; sha256="1bfp746j0dx7kk44nyjqmimvgw14par9ayvqxnzldc05qsazjdwx"; depends=[]; broken = true; }; grouped = derive2 { name="grouped"; version="0.6-0"; sha256="1glxgacpwk7yjbkwg5ci6bmb2il6hf5zhydwi5bbq6hc032m9976"; depends=[MASS]; broken = true; }; groupsubsetselection = derive2 { name="groupsubsetselection"; version="1.0.3"; sha256="118cj5xc8nbq4fs2gbzg1nhynixaflbl0si77gyy4ybw0drsz4nj"; depends=[]; broken = true; }; + grplassocat = derive2 { name="grplassocat"; version="1.0"; sha256="0pi5vq7yqg0ha91y6296ckshxyq3135cg6zcs9x6xba5m5024k4p"; depends=[grplasso]; broken = true; }; gsdensity = derive2 { name="gsdensity"; version="0.1.2"; sha256="0qaigqwlaf03ski08hv3jbqxg3h7zyj7bwaff4kl0q2x95k0pyd4"; depends=[anticlust CelliD dnet dplyr future_apply igraph infotheo MASS Matrix multimode philentropy RANN reshape2 Rgraphviz Seurat supraHex]; broken = true; }; gset = derive2 { name="gset"; version="1.1.0"; sha256="1gingqw6la8n7mnl47wpz9sicxca4zi2m8p35n6cnihrniibhajc"; depends=[Hmisc MCMCpack mvtnorm]; broken = true; }; gtcorr = derive2 { name="gtcorr"; version="0.2-1"; sha256="1n56zmyv58jwr95p453jb86j82pdnq57gfc8m15jndjc9p31zl0m"; depends=[]; broken = true; }; @@ -22362,7 +22762,6 @@ in with self; { hazus = derive2 { name="hazus"; version="0.1"; sha256="1c0ahjdy9di1683nk5k4rmr6rhb66523ny039nyv842rgqdy625j"; depends=[reshape2]; broken = true; }; hbm = derive2 { name="hbm"; version="1.0"; sha256="0qz28azm91a6pbss1mfc47a21d3q9rs3mmw0kgwc7i2a2m43mysm"; depends=[doParallel foreach Matrix]; broken = true; }; hcc = derive2 { name="hcc"; version="0.54"; sha256="14b3pamkywb0wsjpbm0wpflcds0b5mfymvgk92rmf6ngz1bkpdbq"; depends=[]; broken = true; }; - hcci = derive2 { name="hcci"; version="1.0.0"; sha256="11piy1ajg3j3dbh66szzf7lhc3x28fz75ai39vlx0gl5nc2v5zs5"; depends=[]; broken = true; }; hcp = derive2 { name="hcp"; version="0.1"; sha256="0hhcy70g13kclxv733kgiys7qn5bi28abpkli5n2vj0a58ac333m"; depends=[]; broken = true; }; hddtools = derive2 { name="hddtools"; version="0.9.4"; sha256="011yhs8c6riimz63pa2am56n5aip2yk5gryx2amvk29pzp1v6my9"; depends=[curl raster readxl rgdal sp tidyr XML zoo]; broken = true; }; hdlm = derive2 { name="hdlm"; version="1.3.1"; sha256="1zl6bksw0apkmn5shf8qjpxjyx6vb40dc4m4db76hhn5nhcp10ic"; depends=[foreach glmnet iterators MASS Matrix]; broken = true; }; @@ -22373,6 +22772,7 @@ in with self; { helda = derive2 { name="helda"; version="1.1.5"; sha256="0wza0l52l4ijpasrm3czfncajvcc3p2y2ljmp61xxmn38hhvqyk9"; depends=[dplyr ggplot2 rlang sqldf stringr]; broken = true; }; hergm = derive2 { name="hergm"; version="4.1-10"; sha256="04vr5mmsr39rpjnans8xwp1z304rd3hi5za7qhjv7dn5s8c8pw9h"; depends=[ergm igraph intergraph latentnet Matrix mlergm network Rcpp sna stringr]; broken = true; }; heritEWAS = derive2 { name="heritEWAS"; version="0.2.0"; sha256="0yss9vf2m9szq8xi5i2nhf85mfvzvhv6c1f4kvvb2z9lmaicjni5"; depends=[]; broken = true; }; + hexFinder = derive2 { name="hexFinder"; version="0.8.2"; sha256="184fv8xbgaygsb8bxd0gzi1r5girc2i0s8816i7y5pb1ps8bqvzp"; depends=[ggplot2 glue hexSticker httr2 jsonlite magick pkgsearch purrr stringr]; broken = true; }; hhcartr = derive2 { name="hhcartr"; version="1.0.0"; sha256="104xy3ihpi031pyzifnpc0jfq68gsbc12gzv6hp1vjrgy0nqw5l1"; depends=[bookdown captioner checkmate DiagrammeR DiagrammeRsvg ggplot2 hash Matrix rsvg]; broken = true; }; hiPOD = derive2 { name="hiPOD"; version="1.0"; sha256="1i15ickz2s0kffh99qq30pl5hsl0lbj0kp55jnbv4x72hndzhmla"; depends=[rgl]; broken = true; }; hier_part = derive2 { name="hier.part"; version="1.0-6"; sha256="15wlpb2rsn6am8galsbjiy4psp78nlv1x2hz3cnqbwj508w6gsj0"; depends=[betareg gtools MASS]; broken = true; }; @@ -22381,6 +22781,7 @@ in with self; { hierbase = derive2 { name="hierbase"; version="0.1.2"; sha256="1rsyjlwa8x5n83ymwv7qm373k3y7jfp64g717xd1jmn9vrmm052b"; depends=[glmnet hdi SIHR]; broken = true; }; hiertest = derive2 { name="hiertest"; version="1.1"; sha256="17maf1w4vkqknxff3f00fzv136j3dbbigyzl4vq4sln9j27w10r3"; depends=[]; broken = true; }; highD2pop = derive2 { name="highD2pop"; version="1.0"; sha256="1s4v6m2d3vzvxsgmjzczv1zj3kv3ygvv6gbkkbjwsdhkvc1rdmf0"; depends=[fastclime]; broken = true; }; + highSCREEN = derive2 { name="highSCREEN"; version="0.4"; sha256="1nd4jayfhz89kpk4i7s3n3wlza1ik4w3gspplnjmfz951f8i3wlg"; depends=[gplots]; broken = true; }; hillmakeR = derive2 { name="hillmakeR"; version="0.2"; sha256="1baynibgn4xqmpsxna8irggxvdc484mq5nza00rwg58vh1bc7wzq"; depends=[]; broken = true; }; histry = derive2 { name="histry"; version="0.2.4"; sha256="01rdpzkfq7nyiq1gh0cm89dn3466cmhgfj9x19lhl2yvh8xsdz8x"; depends=[CodeDepends evaluate fastdigest roprov]; broken = true; }; hit = derive2 { name="hit"; version="0.4.0"; sha256="1vyla7jlg61rlrmqjb1wya404xj90xys175h12qy30paxsl5icqz"; depends=[glmnet Rcpp speedglm]; broken = true; }; @@ -22392,6 +22793,7 @@ in with self; { hmma = derive2 { name="hmma"; version="1.1.0"; sha256="1qsvczqq44h46z0nfblv4rarbg64imz8m0jhxdhva27kbzdvqf97"; depends=[bnlearn graph MCMCpack mhsmm Rgraphviz]; broken = true; }; hoa = derive2 { name="hoa"; version="2.1.4.1"; sha256="152vz6cddphmxvm7vi6f3b7jjpib0nsb6qv2k1wrmfrpvv3hgsxx"; depends=[statmod survival]; broken = true; }; hockeyR = derive2 { name="hockeyR"; version="1.3.0"; sha256="0nb42c1fbmpmpmc9yjcdrypl5jvlqc2ibrzlvz7n51zwvx4v5gc0"; depends=[dplyr glue httr janitor jsonlite lubridate magrittr padr purrr rvest stringr tidyr tidyselect xgboost zoo]; broken = true; }; + holdem = derive2 { name="holdem"; version="1.2"; sha256="0mcb4civ4p7apm7kfl88apvb4yznsmn4hggfggmjhs046g6bi2p7"; depends=[]; broken = true; }; homeR = derive2 { name="homeR"; version="0.3.0"; sha256="0gi383392rs7snb2l9760vkws5hqfikyaj3i7cyby9g1sc2s6yx8"; depends=[]; broken = true; }; homtest = derive2 { name="homtest"; version="1.0-5"; sha256="1lnqlg3dwq174ic6dbjllysw5fjy5kvvgbl6gvabjmcs66z27fp0"; depends=[]; broken = true; }; horserule = derive2 { name="horserule"; version="1.0.0"; sha256="0d348pn0ld7lr9lfl1z05905l9kl296j0xic1pib6r5l1c5600r9"; depends=[gbm ggplot2 inTrees MASS mvnfast randomForest RColorBrewer Rdpack]; broken = true; }; @@ -22407,20 +22809,19 @@ in with self; { htmltab = derive2 { name="htmltab"; version="0.8.2"; sha256="09hnf339f3hzll7a0shq615h9d6f6xqrcv0c9iid6575m5qsallf"; depends=[httr XML]; broken = true; }; htmltidy = derive2 { name="htmltidy"; version="0.5.0"; sha256="1djkjff3750fm1sp54kf9cjvsqz2x7ia1ns12h5vqqcvwzfd0701"; depends=[htmltools htmlwidgets Rcpp XML xml2]; broken = true; }; htree = derive2 { name="htree"; version="2.0.0"; sha256="15bi5c2p4aghihp3k12s78447j2x9hbsaq56b5lc8jmd1vf0jdwb"; depends=[]; broken = true; }; - httk = derive2 { name="httk"; version="2.3.0"; sha256="1vlv7c1zair8y02y39hmqnnwmmvwb96qcvrhb2bwasi68i15sqm5"; depends=[data_table deSolve ggplot2 magrittr msm mvtnorm purrr Rdpack survey truncnorm]; broken = true; }; hybridEnsemble = derive2 { name="hybridEnsemble"; version="1.7.9"; sha256="0rvaxvkf72g7ycjpw579kd88p7gyldxcnlvhxijyddvwyx7d7kcy"; depends=[ada AUC doParallel e1071 FNN foreach genalg GenSA glmnet kernelFactory NMOF nnet nnls pso quadprog randomForest reportr Rmalschains ROCR rotationForest rpart soma tabuSearch]; broken = true; }; hydroApps = derive2 { name="hydroApps"; version="0.1-1"; sha256="1ycv7l2ywwnx2mgklg6rry7n24jyhi4spvp1xl345yvyn9kf15dz"; depends=[nsRFA]; broken = true; }; hydroMOPSO = derive2 { name="hydroMOPSO"; version="0.1-3"; sha256="14yvsxzlzpisn5hqyqcq1fmqsbj96pqcgyhnj414mj366x6w5qxp"; depends=[hydroTSM lhs randtoolbox xts zoo]; broken = true; }; hydroPSO = derive2 { name="hydroPSO"; version="0.5-1"; sha256="16gdv19yqla80s9fjmvahfn21jv62zivirzs5ch4zm9db54g6bry"; depends=[data_table Hmisc hydroGOF hydroTSM lattice lhs scatterplot3d sp vioplot zoo]; broken = true; }; hydrorecipes = derive2 { name="hydrorecipes"; version="0.0.3"; sha256="0if79msr8rn1ylk36sqa7maynz20v4y6q7h6xiqijlbnikm7n502"; depends=[dplyr earthtide fftw generics Rcpp RcppArmadillo RcppParallel recipes rlang tibble tidyr]; broken = true; }; hydroscoper = derive2 { name="hydroscoper"; version="1.4.1"; sha256="0jhvjmhcprjdjg6a54ic2f4kxfanpgwzzrkyyiggmj5jjg9yfhfw"; depends=[jsonlite pingr readr stringi stringr tibble]; broken = true; }; - hyper_fit = derive2 { name="hyper.fit"; version="1.1.1"; sha256="1xibiydfkhzsw0yqfc0xfzj4yz8xyxqlvnfpyxg33v5fwp9wap3v"; depends=[LaplacesDemon magicaxis MASS rgl]; broken = true; }; hyperSMURF = derive2 { name="hyperSMURF"; version="2.0"; sha256="1aczsph6ax5xfd5rfvsd9bmgaq3j2f5f82fx8whrgbin0hxz19d8"; depends=[randomForest unbalanced]; broken = true; }; hyperbrick = derive2 { name="hyperbrick"; version="1.0"; sha256="1a6l6dlylqm1dxz573rz5zqxn1nk85hcbfdxk0qwkr7z3yzl13c8"; depends=[caTools dfoptim OpenImageR pbapply raster rgdal]; broken = true; }; hypothesestest = derive2 { name="hypothesestest"; version="1.0"; sha256="0g8sm386m1zm9i3900r62x83wb600cy8hqk7dlvbx6wcgrxg82sm"; depends=[]; broken = true; }; hzar = derive2 { name="hzar"; version="0.2-5"; sha256="000l4ki3hvznnhkxc5j422h5ifnsfqalv666j48yby1hsf1lc3kg"; depends=[coda foreach MCMCpack]; broken = true; }; i2dash = derive2 { name="i2dash"; version="0.2.4"; sha256="0silwp4pasry7z1yjhzyw06xpa8021v9bkhinc73i7dzr720ld5v"; depends=[assertive_sets assertive_types flexdashboard glue htmltools knitr magrittr rmarkdown stringi stringr xfun ymlthis]; broken = true; }; iBATCGH = derive2 { name="iBATCGH"; version="1.3.1"; sha256="0xq4q4kc2f0whrxz1vmi2gca9pxqix2qm4sfkwbch85if2k8l8fj"; depends=[msm Rcpp RcppArmadillo]; broken = true; }; + iC10 = derive2 { name="iC10"; version="1.5"; sha256="1xq6xv582wxdb0nc2nia3q38155gx8z26idiqyx7h1rjb20hhwdl"; depends=[iC10TrainingData impute pamr]; broken = true; }; iCiteR = derive2 { name="iCiteR"; version="0.2.1"; sha256="0hbps2q5i7yj6zvqawlayhqqr5iv39yqc0xnk7fvra7rimzc1qid"; depends=[httr]; broken = true; }; iCluster = derive2 { name="iCluster"; version="2.1.0"; sha256="09j36xv87d382m5ijkhmp2mxaajc4k97cf9k1hb11ksk7fxdqz6r"; depends=[caTools gdata gplots gtools lattice]; broken = true; }; iDynoR = derive2 { name="iDynoR"; version="1.0"; sha256="01702vl10191mbq2wby1m0y6h8i6y6ic4pa83d27cg3yccsrhziz"; depends=[vegan XML]; broken = true; }; @@ -22458,6 +22859,7 @@ in with self; { ino = derive2 { name="ino"; version="1.0.2"; sha256="18pl1scg8lxz0x1r2ksvrlpr7qvwp88bxvwiz4j4w3if5w0i0qhk"; depends=[cli crayon doSNOW dplyr forcats foreach ggplot2 glue mvtnorm optimizeR reshape2 rlang scales]; broken = true; }; insiderTrades = derive2 { name="insiderTrades"; version="0.0.1"; sha256="1hz2jmghfihbn1dbrr38zlwa0s44gm84pjhhk0yfrnljg9mqf4qy"; depends=[magrittr RCurl stringr]; broken = true; }; insol = derive2 { name="insol"; version="1.2.2"; sha256="166kgxgzbh55y2qqya6c2si22x0v7asi70im054g6xxwc5187kh3"; depends=[raster]; broken = true; }; + intSDM = derive2 { name="intSDM"; version="2.0.2"; sha256="01gsq853vxkch69pmgypd4h5yfq1fnawa7qlamxglcxy6zmn3269"; depends=[blockCV geodata ggplot2 giscoR inlabru PointedSDMs R6 rgbif sf terra tidyterra]; broken = true; }; intdag = derive2 { name="intdag"; version="1.0.1"; sha256="0mb0a1ccc67clfa75b4hl901zdmx7fxw713c4ybx3i5wc2ldl8ph"; depends=[]; broken = true; }; intePareto = derive2 { name="intePareto"; version="0.1.2"; sha256="0shq97r6x4j7p9vcf855jcvmfhghngbhk5dfqlqqhhcf8ibm2si5"; depends=[biomaRt DESeq2 GenomeInfoDb GenomicAlignments GenomicRanges IRanges rPref Rsamtools]; broken = true; }; intensity_analysis = derive2 { name="intensity.analysis"; version="0.1.6"; sha256="1ydmn7njqk6i2667zaha8mvfndss4im39czadg1f3z6sndp2lsji"; depends=[diffeR ggplot2 raster reshape2 rgdal]; broken = true; }; @@ -22485,13 +22887,13 @@ in with self; { ivfixed = derive2 { name="ivfixed"; version="1.0"; sha256="0a26zrkvz0ffq4zxdx5vhr1nvsi9c15s6gvc1zy2pddjz31x2xi5"; depends=[Formula]; broken = true; }; ivpack = derive2 { name="ivpack"; version="1.2"; sha256="0cr5acjrn41d3q0b77hlg2jmsbf1msvys9gcavm1blsryg2bc03c"; depends=[AER lmtest sandwich]; broken = true; }; ivpanel = derive2 { name="ivpanel"; version="1.0"; sha256="0irjmkw3nnd8ssidvj23lr0hihlhd9acsbaznh88lknx53ijc2qv"; depends=[Formula]; broken = true; }; + ivprobit = derive2 { name="ivprobit"; version="1.1"; sha256="05b5gf5gmi2yrkg61n7w12qlgpnjakd1z8hhqxy6py8hahsf84gm"; depends=[Formula]; broken = true; }; ivregEX = derive2 { name="ivregEX"; version="1.0"; sha256="0zh3rqvhn8ald6lxv9kywy2v1p0nr9ijv6plhpbxc6k51zzsgyl8"; depends=[AER Formula lmtest sandwich]; broken = true; }; jSonarR = derive2 { name="jSonarR"; version="1.1.1"; sha256="054q3ly471xa64yyz2as6vkr440ip1y8n5wl6s3zbhqy3bqkdqif"; depends=[jsonlite RCurl]; broken = true; }; jackknifeKME = derive2 { name="jackknifeKME"; version="1.2"; sha256="0c5shl6s46kz7a623gccqk2plrrf2g29nwr6vbny6009pq3jvzam"; depends=[imputeYn]; broken = true; }; james_analysis = derive2 { name="james.analysis"; version="1.0.1"; sha256="1b2n4ds4ivfk564z87s2rxjl9j0y4drd3cmyv8jqpccmdvx1137d"; depends=[naturalsort rjson]; broken = true; }; jaod = derive2 { name="jaod"; version="0.3.0"; sha256="071j3xqk7gzsic1sk8v0pwmqv6pav0nj9vvbskss3l1gczy80dfr"; depends=[crul jsonlite tibble]; broken = true; }; japanmesh = derive2 { name="japanmesh"; version="0.1.1"; sha256="1p6kssz0q2zjx7yd4x7jf56n62nx4g8gmbc8v2din1mgks4rm614"; depends=[dplyr geosphere lifecycle magrittr purrr rlang sf stringr tibble tidyr units vctrs]; broken = true; }; - jcolors = derive2 { name="jcolors"; version="0.0.4"; sha256="18dmjcrci0z1xy2kglrarzm0idr9g3nhbbw7f1ijls3i0piqdri6"; depends=[ggplot2 scales]; broken = true; }; jdx = derive2 { name="jdx"; version="0.1.4"; sha256="0jqf0nkdyv9g4rifzlkls0n64fdcma2yphwl478772jlgfmxm2jb"; depends=[rJava]; broken = true; }; jgcricolors = derive2 { name="jgcricolors"; version="1.0.0"; sha256="1lg6yzqly5y2cf396b6rvfqplnfyz9v9ay2g4q9m110mng5ln96l"; depends=[ggplot2 knitr markdown RColorBrewer stringr]; broken = true; }; jjAnno = derive2 { name="jjAnno"; version="0.0.3"; sha256="1xqkkqzdalpzc9d9kibc7b2lfmpzxn84f9y8pl1wjs7ins4dhsck"; depends=[dplyr ggiraphExtra ggplot2 magick magrittr]; broken = true; }; @@ -22509,6 +22911,7 @@ in with self; { kerdiest = derive2 { name="kerdiest"; version="1.2"; sha256="16xj2br520ls8vw5qksxq9hqlpxlwmxccfk5balwgk5n2yhjs6r3"; depends=[chron date evir]; broken = true; }; kernelPSI = derive2 { name="kernelPSI"; version="1.1.1"; sha256="1gnp3ixqmijy6xanlc4l8255biwxmlfyhd3y68arry9rzfjkmxpz"; depends=[CompQuadForm kernlab lmtest pracma Rcpp RcppArmadillo]; broken = true; }; kernelPhil = derive2 { name="kernelPhil"; version="0.1"; sha256="0pzsknb0ibm3v0ibfaklb4g2mx7zrva4m29356cirwd29nmd8bqw"; depends=[benchmarkme directlabels dplyr ggplot2 gridExtra Hmisc pbapply reshape2 rgdal wordspace]; broken = true; }; + kernstadapt = derive2 { name="kernstadapt"; version="0.0.2"; sha256="0hbzc0xqlgs3kbblm247hkaic7s9a5slz22slh5dz9ddgfdy1z21"; depends=[misc3d sparr spatstat_explore spatstat_geom spatstat_random spatstat_utils]; broken = true; }; kineticF = derive2 { name="kineticF"; version="1.0"; sha256="1k54zikgva9fw9c4vhkc9b0kv8sq5pmc962s8wxr6qv97liv9p46"; depends=[circular lqmm MASS plotrix sp splancs]; broken = true; }; kmcudaR = derive2 { name="kmcudaR"; version="1.1.0"; sha256="16dkv9ag5375zc23nqakbg7v6knxvh1pips9rjsls0d7rw2bg1bs"; depends=[Rcpp RcppEigen]; broken = true; }; kmlShape = derive2 { name="kmlShape"; version="0.9.5"; sha256="1p35ihjq84jnzq78yksdblc0c1qcn13f8n4khddsxcqvk3a44xb1"; depends=[class kml lattice longitudinalData]; broken = true; }; @@ -22528,7 +22931,6 @@ in with self; { lass0 = derive2 { name="lass0"; version="1.1.0"; sha256="01fafgyhi3fw8ldjw2gf0z9w1si7il3ailwm197fxmw4wqgys9fl"; depends=[doRNG foreach ismev lpSolve]; broken = true; }; lasso2 = derive2 { name="lasso2"; version="1.2-22"; sha256="1l87djh539m444p5nl9975dd3v5nc7j8af9rj4xr54h5d0mbcbjv"; depends=[]; broken = true; }; lassoscore = derive2 { name="lassoscore"; version="0.6"; sha256="1i3i07da8sw9w47rcflhylz8zxvzkyycbc1a4gf6hbcpp21rqd7d"; depends=[glasso glmnet Matrix]; broken = true; }; - latentFactoR = derive2 { name="latentFactoR"; version="0.0.4"; sha256="0kgzgympcfp6l4jysccrlxrbmqasz1v95wkmfsw8qgi7dzfsgywc"; depends=[BBmisc EGAnet fspe googledrive ineq Matrix mlr mvtnorm psych qgraph rstudioapi xgboost]; broken = true; }; latticeDensity = derive2 { name="latticeDensity"; version="1.2.6"; sha256="0l9ypdpy09nnmanj2gvaxzj79s8d9iqwy6rv0rig5fwbqv1y6135"; depends=[sf sp spam spatialreg spatstat spatstat_geom spdep splancs]; broken = true; }; lavaan_survey = derive2 { name="lavaan.survey"; version="1.1.3.1"; sha256="133hpy8s00y6jzwwzl9brdh70w26jycdm3n1c6bcryghwh3ai4xr"; depends=[lavaan MASS survey]; broken = true; }; layer = derive2 { name="layer"; version="0.0.1"; sha256="0mmijkk4ppbmhlp6ah88a9v3iwdd9j6yw7ff8kk7p1iw63qkiyxi"; depends=[dplyr ggnewscale ggplot2 raster scico sf stars]; broken = true; }; @@ -22553,6 +22955,7 @@ in with self; { libsoc = derive2 { name="libsoc"; version="0.7.3"; sha256="0baglknb67gmzr4cimlvz44f11np8glcdjdgs3jy8qlz0c8pm95p"; depends=[]; broken = true; }; libstableR = derive2 { name="libstableR"; version="1.0.2"; sha256="1gkcgbc8a7ks9x8mqmlz98hk55q3qy62izam7csz1s0r5dzsyqcr"; depends=[Rcpp RcppGSL]; broken = true; }; lift = derive2 { name="lift"; version="0.0.2"; sha256="0ynsyl6lw7z7bvwzk2idgxzzqji5ffnnc3bll9h4gwdw666g7fln"; depends=[]; broken = true; }; + liger = derive2 { name="liger"; version="2.0.1"; sha256="121ipwznm40x2xhhlxd20385va4nmvgni5dg24lbhyfn5sb3dsy1"; depends=[matrixStats Rcpp RcppArmadillo]; broken = true; }; likeLTD = derive2 { name="likeLTD"; version="6.3.0"; sha256="1mjf4667xd9pf2684d7vqaj54l5s9pgljn4vkfp32wzbfknq6y8r"; depends=[DEoptim gdata ggplot2 gtools rtf]; broken = true; }; limitplot = derive2 { name="limitplot"; version="1.2"; sha256="0wj1xalm80fa5pvjwh2zf5hpvxa3r1hnkh2z9z285wkbrcl0qfl2"; depends=[]; broken = true; }; linLIR = derive2 { name="linLIR"; version="1.1"; sha256="1v5bwki5j567x2kndfd5nli5i093a33in31025h9hsvkbal1dxgp"; depends=[]; broken = true; }; @@ -22573,7 +22976,9 @@ in with self; { lmvar = derive2 { name="lmvar"; version="1.5.2"; sha256="0wrny8yzk5y4mzpri6xv5wibbnbaxm0195lcbk5jrl5l5gs99bn6"; depends=[Matrix matrixcalc maxLik]; broken = true; }; loadflux = derive2 { name="loadflux"; version="0.0.2"; sha256="08lbpd0nwwck36bkklmqx62lyj9p1ywwk80v1qx7f6zhgfjx8pj4"; depends=[dplyr dygraphs ggplot2 lubridate rlang tidyr tsibble xts zoo]; broken = true; }; loadr = derive2 { name="loadr"; version="0.1.3"; sha256="01nsjsv7c8grsizfisczqwjrz5saff0pgn7716ig4i8nzargvz7a"; depends=[]; broken = true; }; + loe = derive2 { name="loe"; version="1.1"; sha256="1n16pgfxg9vcn729xxjbbvavg2ywbdcch9v2ph8nv3z7psc0q46c"; depends=[MASS]; broken = true; }; logcondens_mode = derive2 { name="logcondens.mode"; version="1.0.1"; sha256="1i2c2prk5j863p3a3q3xnsv684igfi5czz3dib7zfjldpf0qyaq7"; depends=[distr logcondens]; broken = true; }; + longCatEDA = derive2 { name="longCatEDA"; version="0.31"; sha256="0dji41lsknfwmgb2fczzm37dm97wvi45rh878w7pwlzwdh9vq8va"; depends=[]; broken = true; }; loop = derive2 { name="loop"; version="1.1"; sha256="1gr257fm92rfh1sdhsb4hy0fzwjkwvwm3v85302gzn02f86qr5dm"; depends=[MASS]; broken = true; }; loose_rock = derive2 { name="loose.rock"; version="1.2.0"; sha256="13p3mp8m2in3cbcwgj42hgzrwxmgalc2v0z3r1zn1n77iqjvcd7r"; depends=[digest dplyr futile_options ggplot2 httr MASS reshape2]; broken = true; }; lpbrim = derive2 { name="lpbrim"; version="1.0.0"; sha256="1cbkzl23vgs9hf83ggkcnkmxvvj8867k5b9vhfdrznpqyqv1f2gp"; depends=[Matrix plyr RColorBrewer]; broken = true; }; @@ -22604,11 +23009,11 @@ in with self; { marl = derive2 { name="marl"; version="1.0"; sha256="0rndnf3rbcibv3gsrw1kfp5zhg37cw9wwlz0b7dbwprd0m71l3pm"; depends=[]; broken = true; }; mason = derive2 { name="mason"; version="0.3.0"; sha256="1x5wiagb1sy5gkp0xkbr1jzhrjg1c2bqdh4hy6igwcnws2cbhxyr"; depends=[broom dplyr magrittr purrr rlang tibble tidyr tidyselect]; broken = true; }; matR = derive2 { name="matR"; version="0.9.1"; sha256="1qw2vqmpq7gc3dmr9r000ccjj7xa0h82waxnvryz3l17ggryyjjm"; depends=[BIOM_utils MGRASTer]; broken = true; }; + match2C = derive2 { name="match2C"; version="1.2.4"; sha256="05g0g471dfxrfxq9a5l5zgj16m4kh39wfihjj8fdd9b7qxji7ps8"; depends=[ggplot2 mvnfast rcbalance Rcpp]; broken = true; }; matchbook = derive2 { name="matchbook"; version="1.0.7"; sha256="0xfqg8z2zkn215kqmjjkqdwrgsk7cn4jdpxfgd6razhcbvflg48j"; depends=[]; broken = true; }; matie = derive2 { name="matie"; version="1.2"; sha256="1ymx49cyvz63imqw5n48grilphiqvvdirwsrv82p7jgxdyav2xv0"; depends=[cba dfoptim gplots igraph mvtnorm seriation]; broken = true; }; matric = derive2 { name="matric"; version="0.2.0"; sha256="16mwn81g6s10fjyc0f2npsck3aggh643xmcwqy49kyf5jvs188c5"; depends=[arrow dplyr foreach furrr future ggplot2 glue jsonlite logger magrittr purrr readr rlang stringr tibble tidyr yardstick]; broken = true; }; matrixpls = derive2 { name="matrixpls"; version="1.0.13"; sha256="0m9gqq5waicj3znlsyz50cj6w1x6rkvfwknavhxid8r4p9h891ak"; depends=[assertive lavaan MASS matrixcalc psych]; broken = true; }; - mauricer = derive2 { name="mauricer"; version="2.5.2"; sha256="1zd68dzbbcck0y7bk6dw3yp6v9rh824cp3f0vza6y7lav40q1p2v"; depends=[beastier stringr]; broken = true; }; maxTPR = derive2 { name="maxTPR"; version="0.1.0"; sha256="13x5rz0mfha5pzahkk4x67ncz9v77sa690cyl6wigwsldsrvzr3h"; depends=[aucm Rsolnp]; broken = true; }; maxadjAUC = derive2 { name="maxadjAUC"; version="0.1.0"; sha256="04zdaqmavhhrj63s2k5pqncvlzbfnxan7r0fagfka9dypwwcl5qm"; depends=[aucm Hmisc Rsolnp survival]; broken = true; }; mbclusterwise = derive2 { name="mbclusterwise"; version="1.0"; sha256="1ilqaxcxf1k3ck910s0xqwnp88w8ag5rn1dpvaa1i7jlcldsbnhp"; depends=[ade4 doParallel foreach kknn]; broken = true; }; @@ -22630,6 +23035,7 @@ in with self; { meaRtools = derive2 { name="meaRtools"; version="1.0.4"; sha256="1nxyvdq4670696mhg0svxxlvk9hnr8szai8b18pw6754kmw1bjvn"; depends=[emdist ggplot2 gridExtra gtools lattice plyr Rcpp reshape2]; broken = true; }; meditate = derive2 { name="meditate"; version="0.1.3"; sha256="02mgnbxlvi73zpnghlcx89jvri8144cf0bzq0hrbhh2nq2c1sdjg"; depends=[audio checkmate deldir wesanderson]; broken = true; }; medmod = derive2 { name="medmod"; version="1.0.0"; sha256="1f7bzdcjnbz9izlfblxcaa85qxx8kzn62qgjd3qlb7jl7mdy5q54"; depends=[ggplot2 jmvcore lavaan R6]; broken = true; }; + medrxivr = derive2 { name="medrxivr"; version="0.0.5"; sha256="19gakl39n2jch84sv35jkk4g2c0k4h3ch3l3hz1w5p94mn2jlgqr"; depends=[bib2df curl data_table dplyr httr jsonlite lubridate progress purrr rlang stringr tibble vroom]; broken = true; }; mergedblocks = derive2 { name="mergedblocks"; version="1.1.0"; sha256="0hgfyb99hdph4rx32072v40j3z56bwl8lvpxqmms783b997alaml"; depends=[randomizeR]; broken = true; }; met = derive2 { name="met"; version="0.1.0"; sha256="0714103xzc4n178307czxmcv7ygjiigjr9b6xnj240ljp7qmln19"; depends=[DiPs]; broken = true; }; metScanR = derive2 { name="metScanR"; version="1.2.3"; sha256="1v7zrxj3wspx6f5n5s75skcygbf3r85rn4p0z9iwbrbrgxwi4qgs"; depends=[geosphere leaflet matlab plyr RCurl]; broken = true; }; @@ -22640,14 +23046,17 @@ in with self; { metacor = derive2 { name="metacor"; version="1.0-2.1"; sha256="0y3z7jbhw5c2dbn9fx9wlw1311irjc2xvnm5hnaixbbj53qz24n0"; depends=[gsl rmeta]; broken = true; }; metaplotr = derive2 { name="metaplotr"; version="0.0.3"; sha256="01iala6cxsxv30fnlh80md5mpy3ksd2piw90zcls8f68g1c6v1jy"; depends=[ggplot2 gridExtra]; broken = true; }; meteogRam = derive2 { name="meteogRam"; version="1.0"; sha256="167gyxjnl4dyfqs3znv8sdpkvpqdxzdqi1g730s30gycrm9snap9"; depends=[ggplot2 RadioSonde]; broken = true; }; + metricsgraphics = derive2 { name="metricsgraphics"; version="0.9.0"; sha256="1zbx82b34y0rr4w7rzvyc1nzk95w6cdkg0j1kkshbmkvplq6v9i4"; depends=[htmltools htmlwidgets magrittr]; broken = true; }; mfbvar = derive2 { name="mfbvar"; version="0.5.6"; sha256="1wv46h6cr0xnvr8dxymx362skf7nf77yw84y6g48rj9mbq8kkkcj"; depends=[dplyr ggplot2 GIGrvg lubridate magrittr Rcpp RcppArmadillo RcppParallel RcppProgress stochvol tibble zoo]; broken = true; }; mfe = derive2 { name="mfe"; version="0.1.5"; sha256="1pw9gw9bd778s57dyjwbmrmsla4m8dkf8g49gplv4zrsvlgsgbr3"; depends=[cluster clusterCrit e1071 ECoL infotheo MASS rpart rrcov]; broken = true; }; mgpd = derive2 { name="mgpd"; version="1.99"; sha256="0cxpgza9i0hjm5w1i5crzlgh740v143120zwjn95cav8pk8n2wyb"; depends=[corpcor evd fields numDeriv]; broken = true; }; + mhurdle = derive2 { name="mhurdle"; version="1.3-0"; sha256="1in07zk29z5fhrg75wl1fwbrsny4ihjnrqyh2kz1bd448p10f295"; depends=[Formula generics margins maxLik numDeriv prediction Rdpack survival truncreg]; broken = true; }; miRada = derive2 { name="miRada"; version="1.13.8-8"; sha256="1m6rm65pv4r16r0s5ih69nr3v2rnpsvpdpk07pi7k4f7v9wck71v"; depends=[]; broken = true; }; miceMNAR = derive2 { name="miceMNAR"; version="1.0.2"; sha256="1s607icaf3c25mn8xdi3zkzmm8m7qd9a6vjdlz5j7ig2gc9f2y2d"; depends=[GJRM mice mvtnorm pbivnorm sampleSelection]; broken = true; }; microSTASIS = derive2 { name="microSTASIS"; version="0.1.0"; sha256="09zyf80l964lfil56vln70i0r2d8ry2ffx4zz3f3xcka22m94r78"; depends=[crayon fmsb future future_apply ggplot2 ggside progressr reshape2 stringr]; broken = true; }; microclustr = derive2 { name="microclustr"; version="0.1.0"; sha256="04xn8p4wgmxq1jbxawq0rhx6l7y1kddlbdfid8zsi4x4arkz7hvp"; depends=[Rcpp]; broken = true; }; microdemic = derive2 { name="microdemic"; version="0.6.0"; sha256="1w4zh0vagnar95l5b8cgmcvp8q7vk2iba5g8d8g2ywynqiqcx5fc"; depends=[crul data_table httpcode jsonlite tibble]; broken = true; }; + microsamplingDesign = derive2 { name="microsamplingDesign"; version="1.0.8"; sha256="0swaqvzqbmlk9j2gr8z7x7xrkr38xndprg9k66whzcigxfh8nhiz"; depends=[abind deSolve devtools ggplot2 gridExtra gtools knitr MASS matrixcalc matrixStats plyr Rcpp RcppArmadillo readr reshape2 shiny stringr]; broken = true; }; microservices = derive2 { name="microservices"; version="0.2.0"; sha256="1yrjjlqmmbbwjd34pm06d6v88b63m2mx37flaw4zpkqni6rsvmwq"; depends=[config desc dplyr fs glue purrr withr]; broken = true; }; migrbc = derive2 { name="migrbc"; version="2.0.9"; sha256="1nbxdm70a9lvbp4sw78719hdpbqnziw1y7r4xk8i390q2c195am1"; depends=[dplyr futile_logger lubridate Rcpp stringr]; broken = true; }; milorGWAS = derive2 { name="milorGWAS"; version="0.6"; sha256="1gl4lg3m11hkj47g7zqq0xavxzj5z1vjbb88pf03r7200qnb5ff8"; depends=[gaston Rcpp RcppEigen]; broken = true; }; @@ -22658,9 +23067,12 @@ in with self; { minxent = derive2 { name="minxent"; version="0.01"; sha256="1a0kak4ff1mnpvc9arr3sihp4adialnxxyaacdgmwpw61wgcir7h"; depends=[]; broken = true; }; mipred = derive2 { name="mipred"; version="0.0.1"; sha256="0kijn2xj0dh28rm2sjgd8j1a3c5avc3fjfvvcmzfasvxqdjflv6j"; depends=[mice]; broken = true; }; miraculix = derive2 { name="miraculix"; version="0.9.23"; sha256="0i08v5hq43296k3sa7akpq4h5dmvpkgn7cfpqwdyp0qaxkqk0k0s"; depends=[RandomFieldsUtils]; broken = true; }; + mirai_promises = derive2 { name="mirai.promises"; version="0.4.1"; sha256="0yi9ks737b3afdbpj088lh33h2hb9bx993j2ag0klbwsfz2dffmi"; depends=[nanonext promises]; broken = true; }; miscor = derive2 { name="miscor"; version="0.1-1"; sha256="1vn0q0i2f1szjywddb7h7krpbf0qch6gmbzs03m4zb03xd70983b"; depends=[]; broken = true; }; mise = derive2 { name="mise"; version="0.1.0"; sha256="1ydbm76w3y0p5h82shxjblwlzbrmzwx0bgq9w2axjwz2nx8jfw0a"; depends=[]; broken = true; }; misha = derive2 { name="misha"; version="4.2.8"; sha256="0s4c3ryjg7l4r217x0xdbw2ha22h3gbcl2s70hwqzd9qmikjvzdn"; depends=[curl magrittr]; broken = true; }; + misreport = derive2 { name="misreport"; version="0.1.1"; sha256="1f78zcw4cg51mjvflhwd64hip2gj8x9ng1mhh4w43yv3x8hmbd6h"; depends=[mvtnorm numDeriv VGAM]; broken = true; }; + mistat = derive2 { name="mistat"; version="2.0.4"; sha256="1hr1gps0w3mfphnc221c6k7h7rwk1f7g6nxkxkb9g8sdacr7ijhh"; depends=[]; broken = true; }; mixComp = derive2 { name="mixComp"; version="0.1-2"; sha256="01zgf31mmnjnwwji9yadfhwa49xy4i3wf0f5glifmpnvmr6d7y1d"; depends=[boot cluster expm kdensity matrixcalc Rsolnp]; broken = true; }; mixEMM = derive2 { name="mixEMM"; version="1.0"; sha256="0344ay1avi37kvh5w9bknayx67yh7rflj6zhw68d2888v7cbghjy"; depends=[]; broken = true; }; mixRasch = derive2 { name="mixRasch"; version="1.1"; sha256="1r067pv7b54y1bz8p496wxv4by96dxfi2n1c99gziqf5ramx3qzp"; depends=[]; broken = true; }; @@ -22677,8 +23089,9 @@ in with self; { mlmc = derive2 { name="mlmc"; version="1.0.0"; sha256="01h7w0ajyg3bccynlpbi3yjpy089wczbfbajpg6yw5v4dppw7k7a"; depends=[ggplot2 Rcpp]; broken = true; }; mlmmm = derive2 { name="mlmmm"; version="0.3-1.2"; sha256="1m5ziiqs3ll1xjm1yf7x4sdc910jypn3kjnbadf95xxkvqmfrsqq"; depends=[]; broken = true; }; mlr3proba = derive2 { name="mlr3proba"; version="0.4.9"; sha256="1qhxwx881b482wp85chw0s9390kwyhq32bjr4rlpscb53ppqx6v5"; depends=[checkmate data_table distr6 mlr3 mlr3misc paradox R6 Rcpp survival survivalmodels]; broken = true; }; - mlr3resampling = derive2 { name="mlr3resampling"; version="2024.1.8"; sha256="0fzh0b3bpg2llqgl0bm7v72h0ffy3dgr310gw8lsgv28b9i7sc1g"; depends=[checkmate data_table mlr3 mlr3misc paradox R6]; broken = true; }; + mmeta = derive2 { name="mmeta"; version="3.0.0"; sha256="088mynadrcwrw7g31f6p0g3ykq2q44mwsbpp056v8s19hq5pxjn1"; depends=[aod ggplot2]; broken = true; }; mmm2 = derive2 { name="mmm2"; version="1.2"; sha256="1h9pn5s3jjs4bydrr1qysjb4hv7vs4h3m7mvi22ggs2dzyz3b298"; depends=[gee]; broken = true; }; + mmpf = derive2 { name="mmpf"; version="0.0.5"; sha256="1w1ll1l7yzwb1wmlrcfpgqyzni7yb20kxy422y867hx2ndxlfwpz"; depends=[checkmate data_table]; broken = true; }; mnj = derive2 { name="mnj"; version="1.0"; sha256="05rz6krcq56zqvvaz3myf1aki2z635g2zrqyl25n2da1cvyjwdzq"; depends=[rpart]; broken = true; }; mnlogit = derive2 { name="mnlogit"; version="1.2.6"; sha256="0dfwpkl8g7ap5xr48smiv8vdbamd2r1liy9nwpsn0kcsr9cj65n9"; depends=[Formula lmtest mlogit]; broken = true; }; mnmer = derive2 { name="mnmer"; version="0.99.1"; sha256="0smy7n016nax4wng8pikmgwmbkrhykc2hzvh60hwfbqlbfda66yj"; depends=[Biostrings cpp11]; broken = true; }; @@ -22687,8 +23100,8 @@ in with self; { modchart = derive2 { name="modchart"; version="0.5"; sha256="1mn8zywqhxhvy0k6mn0jsn90g9yb6sxyv34syzzxrxs2kdzx5szg"; depends=[collapsibleTree dplyr DT dygraphs highcharter htmlwidgets jsonlite lazyeval leaflet magrittr networkD3 plotly RColorBrewer rgdal shiny shinyBS shinydashboard shinydashboardPlus sp sparkline sunburstR treemap]; broken = true; }; modcmfitr = derive2 { name="modcmfitr"; version="0.1.0"; sha256="1d6fi7pc10w2a97h1prhkg5cvzmxjp11c5bwrz90zry0m8anwjyh"; depends=[gtools nloptr]; broken = true; }; modelROC = derive2 { name="modelROC"; version="1.0"; sha256="0iyx7c98ym7dy6pfssj7474h9wjpzjwy0fyc5bnqyi1lmjgd508k"; depends=[do ggplot2 ROCit survivalROC tmcn]; broken = true; }; - modelgrid = derive2 { name="modelgrid"; version="1.1.1.0"; sha256="1z6g0akczry7vldkk6anfq572zbsfzbd6qnyllgjpbxhy3rrrq0r"; depends=[caret dplyr ggplot2 lattice magrittr purrr]; broken = true; }; modelplotr = derive2 { name="modelplotr"; version="1.1.0"; sha256="0i1ssfcyl97zaxc9khdngrmsq9ydrmgv2nd7c6kc6i9z93jbkk4k"; depends=[dplyr ggfittext ggplot2 gridExtra magrittr RColorBrewer rlang scales]; broken = true; }; + modeltime_ensemble = derive2 { name="modeltime.ensemble"; version="1.0.3"; sha256="17mnz2x7i540gzwpqca106saafvsns9ar1q09pnnzkx2m4xv322i"; depends=[cli doParallel dplyr foreach generics glue magrittr modeltime modeltime_resample parsnip purrr recipes rlang rsample stringr tibble tictoc tidyr timetk tune workflows yardstick]; broken = true; }; modeltime_gluonts = derive2 { name="modeltime.gluonts"; version="0.1.0"; sha256="1nivqpdyr2s6q70bixna0a18gbhrf1r20vm0gj8b51idjignwpp7"; depends=[dplyr forcats fs glue magrittr modeltime parsnip purrr reticulate rlang stringr tibble tidyr timetk]; broken = true; }; modeltime_h2o = derive2 { name="modeltime.h2o"; version="0.1.1"; sha256="0rg7ha1zy0a1fbwrljsglfnfgkl747hjga8xajlzyrczhrmh4vnk"; depends=[dplyr fs glue h2o magrittr modeltime parsnip purrr rlang stringr tibble tidyr timetk]; broken = true; }; modiscloud = derive2 { name="modiscloud"; version="0.14"; sha256="0vwhfp50yb21xkanvzk983vk0laflv60kj1ybx3fydfljwqx0rwj"; depends=[date raster rgdal sfsmisc sp]; broken = true; }; @@ -22715,11 +23128,13 @@ in with self; { mppa = derive2 { name="mppa"; version="1.0"; sha256="06v6vq2nfh4b407x2gyvcp5wbdrcnk3m8y58akapi66lj8xplcx4"; depends=[]; broken = true; }; mptools = derive2 { name="mptools"; version="1.0.1"; sha256="1g4fbfwxv9hir0jn22nh9854blgkh0b5jan3lv0888izj4isa1hc"; depends=[animation lattice latticeExtra raster rasterVis sp viridis zoo]; broken = true; }; mregions = derive2 { name="mregions"; version="0.1.8"; sha256="16z610j01nf9k1hamsxydk2j6qdqpbyj29b5hm9r3fi8fm3smhd6"; depends=[data_table geojson geojsonio geojsonsf httr jsonlite rappdirs sf sp tibble xml2]; broken = true; }; + ms_sev = derive2 { name="ms.sev"; version="1.0.4"; sha256="1sr2rgiskgwjhwif70qj6ga8i8kg4bh342hff66b2a54rxrchmw5"; depends=[]; broken = true; }; msSurv = derive2 { name="msSurv"; version="1.2-2"; sha256="02qm3mq17d2yj5mbz6gapd3zfi1wmiad5hpyimcb39impk43n2hf"; depends=[class graph lattice]; broken = true; }; msaeDB = derive2 { name="msaeDB"; version="0.2.1"; sha256="0ccvg41d28qjbknhsamw95nq8fdibmz03pwblddkqywfl5yarii3"; depends=[magic MASS]; broken = true; }; msaeOB = derive2 { name="msaeOB"; version="0.1.0"; sha256="05m6r5jk21l9d2j546h7vf8caic83nm0y55zfamr94z4q221486x"; depends=[abind magic MASS Matrix]; broken = true; }; msaeRB = derive2 { name="msaeRB"; version="0.2.1"; sha256="0mpyirvaflmp6gc35kbz1rw5ydxxdgfji3j9c8hjrjqz6759birb"; depends=[abind magic MASS Matrix]; broken = true; }; msap = derive2 { name="msap"; version="1.1.8"; sha256="0z5lm782jjb9w1h5vgz8bmxjdcrq9zb3xp1w5cb479jjc7krlgg3"; depends=[ade4 ape]; broken = true; }; + msda = derive2 { name="msda"; version="1.0.3"; sha256="0lq6mqhksd35qpwl6ira72mwdzlpaxiv1wzms441r2fh1j0957dp"; depends=[MASS Matrix]; broken = true; }; msgl = derive2 { name="msgl"; version="2.3.9"; sha256="0793d12cd1mcnr97byhfwpnvm329w78f56n7dcs4116hlizp8l9h"; depends=[BH Matrix Rcpp RcppArmadillo RcppProgress sglOptim]; broken = true; }; mssm = derive2 { name="mssm"; version="0.1.6"; sha256="08bgfli7kvvsfpvlvlcdxp301gy6wggidlgllarxjwi06v9c8as5"; depends=[nloptr Rcpp RcppArmadillo testthat]; broken = true; }; mssqlR = derive2 { name="mssqlR"; version="1.0.0"; sha256="0qdnm7cx9cg14vfcnkmcjqr1jpxsw8xlrbnxldvzz44mzv2n878l"; depends=[magrittr RODBC]; broken = true; }; @@ -22736,6 +23151,7 @@ in with self; { multicon = derive2 { name="multicon"; version="1.6"; sha256="16glkgnm4vlpxkhf1xw1gl1q10yavx9479i21v29lldag35z8pqx"; depends=[abind foreach mvtnorm psych sciplot]; broken = true; }; multicross = derive2 { name="multicross"; version="2.1.0"; sha256="17hk03wsms9ij6hp6dw77cvvngdb5i66is6pcl1q21pyp327zqi6"; depends=[crossmatch MASS Matrix nbpMatching]; broken = true; }; multifluo = derive2 { name="multifluo"; version="1.1"; sha256="1hnh1gj6lfnh2fn0v064bszydgsr6p9f7p8yxyw5rdxfrxymiw09"; depends=[agricolae ellipse imager]; broken = true; }; + multigroup = derive2 { name="multigroup"; version="0.4.5"; sha256="1d3m2c3md9iiv1gfqfyik1xj3fsas85bmf2vbkaks8ljxa42f55k"; depends=[MASS]; broken = true; }; multilateral = derive2 { name="multilateral"; version="1.0.0"; sha256="13zp2357vqaj09m6af8gzjgf74983icikbnn11z18r8c3wb5kngy"; depends=[assertive data_table fastmatch MatrixModels yaml]; broken = true; }; multinbmod = derive2 { name="multinbmod"; version="1.0"; sha256="1c4jyzlcjkqdafj9b6hrqp6zs33q6qnp3wb3d7ldlij7ns9fhg71"; depends=[]; broken = true; }; multinomRob = derive2 { name="multinomRob"; version="1.8-6.1"; sha256="1fdjfk77a79fy7jczhpd2jlbyj6dyscl1w95g64jwxiq4hsix9s6"; depends=[MASS mvtnorm rgenoud]; broken = true; }; @@ -22750,14 +23166,15 @@ in with self; { mvprpb = derive2 { name="mvprpb"; version="1.0.4"; sha256="1kcjynz9s7vrvcgjb9sbqv7g50yiymbpkpg6ci34wznd33f7nrxm"; depends=[]; broken = true; }; mvrtn = derive2 { name="mvrtn"; version="1.0"; sha256="0k0k76wk5zq0cjydncsrb60rdhmb58mlf7zhclhaqmli1cy697k8"; depends=[]; broken = true; }; mwaved = derive2 { name="mwaved"; version="1.1.8"; sha256="092sqd9harx289bgghw9x495llzhab0vkgkjka5jhi4ad1rfk3vh"; depends=[Rcpp shiny]; broken = true; }; + mwcsr = derive2 { name="mwcsr"; version="0.1.8"; sha256="0vyvxw708c2m832jwsnfd8jfig5qbnixfl85frpch1c9qqp3238p"; depends=[igraph Rcpp]; broken = true; }; myepisodes = derive2 { name="myepisodes"; version="1.1.1"; sha256="0xk9bwgpl630nhc8qa2pc0rwqbqk3haxnp78gfxq6sn6z7i44k1p"; depends=[XML]; broken = true; }; mztwinreg = derive2 { name="mztwinreg"; version="1.0-1"; sha256="1rg6ikaqdrc7q44s3r3km8h45prnvcpzpxd7nxbmh209iz9j19ai"; depends=[mclogit rms]; broken = true; }; nCDunnett = derive2 { name="nCDunnett"; version="1.1.0"; sha256="0q2db1pixqr0wbx4bd05c98i1p0vgaqsfa1iwjxr08c62a5xhkks"; depends=[]; broken = true; }; nCal = derive2 { name="nCal"; version="2021.9-12"; sha256="133dpy2rp8sabwdlk0wjxs9rzixzcja73im94qaw26z5xsnaydhf"; depends=[drc gdata gWidgets2 kyotil]; broken = true; }; + nCopula = derive2 { name="nCopula"; version="0.1.1"; sha256="03qbfvx0lg9prg52fk1jxar2bng2x6scac4g2c64kvp6vmf6x4mv"; depends=[copula Deriv stringi stringr]; broken = true; }; nCov2019 = derive2 { name="nCov2019"; version="0.4.6"; sha256="00jwywvb4prypn7cvwd1fb29jffvzdmg18axnl9ncncr0xjmvgx3"; depends=[downloader ggplot2 jsonlite RColorBrewer]; broken = true; }; nFCA = derive2 { name="nFCA"; version="0.3"; sha256="1jyyzagmppm3i7vh3ia4ic0zql1w04f66z81v0zpdihd4cbl5ra7"; depends=[]; broken = true; }; nVennR = derive2 { name="nVennR"; version="0.2.3"; sha256="035gblc8427v0vq288rib3jfpz5fmcpvqg6nfaijwmbkz3gd41b6"; depends=[Rcpp]; broken = true; }; - nadiv = derive2 { name="nadiv"; version="2.17.2"; sha256="0v2jw0md4bjn15g6slx2bx7ipr3r0s1zv3frjach3rd7b1bs9z7k"; depends=[Matrix]; broken = true; }; namedCapture = derive2 { name="namedCapture"; version="2020.4.1"; sha256="0zdw3h3n4qjv9cpidb3g523ld6rrh49l2c1yhfqhk5wb7vddrs46"; depends=[]; broken = true; }; namespace = derive2 { name="namespace"; version="0.9.1"; sha256="1bsx5q19l7m3q2qys87izvq06zgb22b7hqblx0spkvzgiiwlq236"; depends=[]; broken = true; }; nanop = derive2 { name="nanop"; version="2.0-6"; sha256="007gdc93pk0vpfmsw7zgfma2k1045n2cxwwsyy276smy0ys9fdhp"; depends=[distrEx rgl]; broken = true; }; @@ -22767,7 +23184,8 @@ in with self; { neariso = derive2 { name="neariso"; version="1.0.1"; sha256="1b2gnws75kkqsi8mg9n0zzdaawx57a6zz47cswabj5m6nb09ikh8"; depends=[]; broken = true; }; needy = derive2 { name="needy"; version="0.2"; sha256="1ixgpnwrg6ph1n5vy91qhl1mqirli9586nzkmfvzjrhdvrm0j5l0"; depends=[]; broken = true; }; neotoma = derive2 { name="neotoma"; version="1.7.4"; sha256="1fknzp7qg5l5lkfvqfld0x67zj3xmi8vivsg70m47mbpcs92hmcf"; depends=[analogue dplyr httr jsonlite leaflet plyr reshape2 xml2]; broken = true; }; - netcom = derive2 { name="netcom"; version="2.1.6"; sha256="1i9d7w497qqjkwqvskbm1k5jj03pf84am8jifhhmxmmvd9sk6ldw"; depends=[clue doParallel dplyr expm foreach GenSA ggfortify ggplot2 ggraph igraph magrittr Matrix optimx pdist pracma reshape2 rlang tibble vegan]; broken = true; }; + neotoma2 = derive2 { name="neotoma2"; version="1.0.3"; sha256="1a7qcpypbr7vakrzl039ckv3cdy040gl6m3jpya1s284r30b12fx"; depends=[assertthat dplyr geojsonsf gtools httr jsonlite leaflet lubridate magrittr progress purrr rlang sf stringr tidyr uuid wk]; broken = true; }; + netchain = derive2 { name="netchain"; version="0.2.0"; sha256="1skpf1n6a17mjkcxqpl6vrskk04yvqa0v4n2zw9x5r1h46q9m6qk"; depends=[gtools igraph Matrix Rcpp stringr]; broken = true; }; netgen = derive2 { name="netgen"; version="1.3.2"; sha256="1yqi4rb6w9ipxgbl1j1s2s81cg7nzrn65irn5gs82hsq94d6vv2j"; depends=[BBmisc checkmate ggplot2 igraph lhs mvtnorm stringr]; broken = true; }; netjack = derive2 { name="netjack"; version="1.2.0"; sha256="060ygb0kxi0gx1ya38cmf5hhyy6jkwq5519azdqhq5i324cwzzm7"; depends=[brainGraph ggplot2 igraph Rdpack]; broken = true; }; networkTomography = derive2 { name="networkTomography"; version="0.3"; sha256="1hd7av231zz0d2f9ql5p6c95k7dj62hp0shdfshmyfjh8900amw7"; depends=[coda igraph KFAS limSolve plyr Rglpk]; broken = true; }; @@ -22787,17 +23205,20 @@ in with self; { nnetpredint = derive2 { name="nnetpredint"; version="1.2"; sha256="1c6s9wm6vhylwv4xhp2hkllw18zj8hdr17ls9vlxm9qs3wx1v48w"; depends=[RSNNS]; broken = true; }; nntrf = derive2 { name="nntrf"; version="0.1.4"; sha256="1kasj861ln5q93wna1pk6sbjsssy3vpfzvk8jxd0drb17x3brpx8"; depends=[FNN NeuralNetTools nnet pracma]; broken = true; }; nodeHarvest = derive2 { name="nodeHarvest"; version="0.7-3"; sha256="0nh3g50rk9qzrarpf29kijwkz9v60682i0ag77j2ipyvhhbpwpkc"; depends=[quadprog randomForest]; broken = true; }; + nomordR = derive2 { name="nomordR"; version="0.1"; sha256="02d5gk5pd4vpd61ys9x81maxjrmbshx1wdv6xxsvafrnz7a7pmks"; depends=[]; broken = true; }; nontarget = derive2 { name="nontarget"; version="1.9"; sha256="0ndqcr73sja5ks5kdahhakpz9lw3rp26imklagdv4f5agqnb608s"; depends=[enviPat mgcv nontargetData]; broken = true; }; nontargetData = derive2 { name="nontargetData"; version="1.1"; sha256="07cdbpmn64sg4jfhljdcx503d55azyz58x7nkji044z3jmdryzqw"; depends=[]; broken = true; }; norgeo = derive2 { name="norgeo"; version="2.3.1"; sha256="1437b49ig7j5c3ympb8mjn0qz43szpmwqd3s8rlqmlfhycnh9maw"; depends=[data_table DBI httr2 magrittr odbc RSQLite writexl]; broken = true; }; norm2 = derive2 { name="norm2"; version="2.0.4"; sha256="0ahz6x59k00pqalzjc3ajiby1ysmarjssga9amwh9vd6vmzzyfb7"; depends=[]; broken = true; }; normtest = derive2 { name="normtest"; version="1.1"; sha256="073r2mwfs6c4vqh8921nlyygl0f20nhv997s0iwf00d3jckkc4pp"; depends=[]; broken = true; }; normwhn_test = derive2 { name="normwhn.test"; version="1.0"; sha256="1kr45bfydk40hgdg24i2f28cdaw65hg9gmsgv4lsvvr2m3r74vi6"; depends=[]; broken = true; }; + nose = derive2 { name="nose"; version="1.0"; sha256="17l78vmfqc22inq6zaqpnk2m91wp0nfjbbwfcpfqykf8lk9ipqna"; depends=[]; broken = true; }; notifyR = derive2 { name="notifyR"; version="1.02"; sha256="0jx76ic5r1crcgg0n0yqnka0gwniflfxakh838a98j9wb11wi6h5"; depends=[RCurl rjson]; broken = true; }; nowcastDFM = derive2 { name="nowcastDFM"; version="1.0.0"; sha256="1g2mngg4r6jl37cv9s8a2a5hlid7n4igdxp3rxk593jnqxl9a0ha"; depends=[dplyr matlab pracma signal]; broken = true; }; nowcasting = derive2 { name="nowcasting"; version="1.1.4"; sha256="1nj34cbkv1xlhmcfhxs32shv00mz02rp95xj59qkq5by53sx8qwq"; depends=[corpcor DBI httr lubridate magic matlab Matrix RCurl RMySQL vars xts zoo]; broken = true; }; npm = derive2 { name="npm"; version="1.0.0"; sha256="01v913ylsh895yxkkpyviplcxcc3c90znccvjp7wbflmxxnvrasd"; depends=[assertthat cli crayon erratum]; broken = true; }; nprcgenekeepr = derive2 { name="nprcgenekeepr"; version="1.0.5"; sha256="1j6pfc694yf1m42a0fhlbh5wdbmgs61fswbw7083h69d2sr2zq05"; depends=[anytime futile_logger htmlTable lubridate Matrix plotrix readxl Rlabkey rlang shiny stringi WriteXLS]; broken = true; }; + npsr = derive2 { name="npsr"; version="0.1.1"; sha256="1fzvilzjg9z05991sr1s1bdp17kfl6d1580qdllk8is9ac06np0v"; depends=[gmp infotheo MASS]; broken = true; }; npst = derive2 { name="npst"; version="2.0"; sha256="1y5ij3nmh9pj6p97jpx75g26sk508mznr0l67cwj381zfb77hj1n"; depends=[]; broken = true; }; nsapi = derive2 { name="nsapi"; version="0.1.1"; sha256="06xf2p6f911vwpzky47r35fjgjvlhp13p9pf1zlvjrv66kdw8vbp"; depends=[crul xml2]; broken = true; }; nsdr = derive2 { name="nsdr"; version="0.1.1"; sha256="1p73aj465lk52n3dikkqi54zm2f9v00ikpmry10p42qhfkgrw61l"; depends=[]; broken = true; }; @@ -22806,13 +23227,14 @@ in with self; { nsrr = derive2 { name="nsrr"; version="0.2.0"; sha256="1x1c7pvyfvzmaymxcz6ghr5002wz48796c3hsihwbx6951w623sq"; depends=[digest httr jsonlite]; broken = true; }; ntwk = derive2 { name="ntwk"; version="1.0.0"; sha256="1c12c3pq992f02z3ikx17zv2djq9d9ly232ha0j5jswsksqzx024"; depends=[assertthat copCAR ghyp Matrix mvtnorm pracma zoo]; broken = true; }; nutrientr = derive2 { name="nutrientr"; version="0.1"; sha256="09623rimvy0jd6i26bm8d80jhvgwril9r2vbnlcwznmqr4fr6fhm"; depends=[dplyr ggplot2 httr jsonlite qpdf stringr testthat tibble tidyr tidyselect]; broken = true; }; - o2geosocial = derive2 { name="o2geosocial"; version="1.1.1"; sha256="1vsp71c06vyryrbbm44ms57fqqprxidrnwbncqfgjfc1wrii4crw"; depends=[data_table geosphere ggplot2 outbreaker2 Rcpp visNetwork]; broken = true; }; obliqueRF = derive2 { name="obliqueRF"; version="0.3"; sha256="1bwlgv820mmpc6vg26bsdlfy2p78586i3y42hkzbw3z1fmwq3pz5"; depends=[e1071 mda pls ROCR]; broken = true; }; obs_agree = derive2 { name="obs.agree"; version="1.0"; sha256="191xshnrncjqzwd2rdq334vsx0338q3y3k1nbm04hdaysbnla9jv"; depends=[]; broken = true; }; occTest = derive2 { name="occTest"; version="0.1.1"; sha256="11dqkah6z50zbxiyniv4f2f0n742gmgzqdaarvc17vn750b6b595"; depends=[alphahull biogeo CoordinateCleaner countrycode data_table dataPreparation dplyr DT ggplot2 Matrix outliers pingr plyr raster rgbif rgdal rgeos rnaturalearth rnaturalearthdata sf sp spocc stringr svMisc tictoc tidyverse]; broken = true; }; occUncertain = derive2 { name="occUncertain"; version="0.1.0"; sha256="0rlcwiy45kx9168g7bf1hkz9rkbpfgn7b085lzksg97f05hij52z"; depends=[ConR knitr rgdal]; broken = true; }; + ocomposition = derive2 { name="ocomposition"; version="1.1"; sha256="0fk8ia95yjlvyvmjw7qg72piqa40kcqq9wlb3flc6a81pys1ycb5"; depends=[bayesm coda]; broken = true; }; odeintr = derive2 { name="odeintr"; version="1.7.1"; sha256="0wfb5lgv10p0qyfbn9hdg14bda37v43lpgbwv6nbw63zzbsbazqi"; depends=[BH Rcpp]; broken = true; }; odns = derive2 { name="odns"; version="1.0.2"; sha256="0a2ifmyrsfih5a7jwc0b6l9wl7c1s5x08fq5bfm27xm9jnb8fwsn"; depends=[data_table glue httr jsonlite]; broken = true; }; + odpc = derive2 { name="odpc"; version="2.0.5"; sha256="0cbkq8parb8br1j386xk5mgwz8gkmwvp79f9sjvzhs7z6wlbp0pv"; depends=[doParallel foreach forecast MASS Rcpp RcppArmadillo]; broken = true; }; okmesonet = derive2 { name="okmesonet"; version="0.1.5"; sha256="1kzyzmg702ayzphn9jsk64m51mlnz37ylxiwq5gsr23vaiida680"; depends=[plyr]; broken = true; }; oldbailey = derive2 { name="oldbailey"; version="1.1.0"; sha256="17wvnz23rhl0n50mq2b93523kxdvc3imvfii9b33viwcm4cq6zkn"; depends=[dplyr httr jsonlite rvest stringr tidyr]; broken = true; }; omd = derive2 { name="omd"; version="1.0"; sha256="0s1wcgivqapbkzjammga8m12gqgw113729kzfzgn02nsfzmsxspv"; depends=[]; broken = true; }; @@ -22824,16 +23246,15 @@ in with self; { oops = derive2 { name="oops"; version="0.2.0"; sha256="0xg69riqphvsqqa953v4mlcakvl0invf29678nrljibg31n4wak5"; depends=[]; broken = true; }; openSTARS = derive2 { name="openSTARS"; version="1.2.3"; sha256="1xpba5bagq16n1k94izshdizqyx99mad1nx2w77ljznmx5qrpqa6"; depends=[data_table progress raster rgdal rgrass7 sp SSN]; broken = true; }; openadds = derive2 { name="openadds"; version="0.2.0"; sha256="1jb8zd3rpxfkjkg895iab6m4cfi53p5vy3nnpjkgq7ym6499qjcv"; depends=[crul dplyr jsonlite maptools rappdirs readr tibble xml2]; broken = true; }; + openscoring = derive2 { name="openscoring"; version="1.0.1"; sha256="0cyay8gahv8xyssyjhc18myvzi060rvlkakf69w2xpfkrfjsk2rf"; depends=[cli glue httr jsonlite lifecycle rlang stringr]; broken = true; }; opensensmapr = derive2 { name="opensensmapr"; version="0.6.0"; sha256="0inq86zrkax281wh5rj3pxjp3lgrhsqvma0p6kvizb5c7cwws5in"; depends=[digest dplyr httr lazyeval magrittr purrr readr]; broken = true; }; opentimsr = derive2 { name="opentimsr"; version="1.0.13"; sha256="0m4xp70cq4h76r4qk7krn5p9w3xv44z5lrkpys7kbvxr38g5y0il"; depends=[DBI Rcpp RSQLite]; broken = true; }; opentraj = derive2 { name="opentraj"; version="1.0"; sha256="13nqal96199l8vkgmkvl542ksnappkscb6rbdmdapxyi977qrgxk"; depends=[doParallel foreach maptools openair plyr raster reshape rgdal sp]; broken = true; }; optAUC = derive2 { name="optAUC"; version="1.0"; sha256="0j1llzqa3n7kqw3i5bb7284z0hi6s5jbjfl9zap0l7xf6hg4x1dn"; depends=[MASS]; broken = true; }; optCluster = derive2 { name="optCluster"; version="1.3.2"; sha256="11k6mbkwmvhmcvnc4hgl8aa3j7n7im5g3040dgppahzdndysgnw3"; depends=[cluster gplots kohonen MBCluster_Seq mclust RankAggreg]; broken = true; }; optiRum = derive2 { name="optiRum"; version="0.40.1"; sha256="1kl9mzh53pwhrxbn89dsjjpfji7k8vmysscd1qd9sw7vqdan8g6x"; depends=[AUC data_table ggplot2 knitr plyr scales stringr XML]; broken = true; }; - optiSel = derive2 { name="optiSel"; version="2.0.7"; sha256="0rqwwc33rb4bp8j3m0lqrv8l539h6bbfhlj4gwa07xsdpvkyq4b5"; depends=[data_table doParallel ECOSolveR foreach kinship2 magic MASS Matrix nadiv optiSolve pedigree plyr pspline purrr quadprog Rcpp RcppArmadillo reshape2 stringr]; broken = true; }; optimr = derive2 { name="optimr"; version="2019-12.16"; sha256="003wz9r3xdi47ad22l4dkhp0dalknb2s9fp82yamjx7x1xbfvcbk"; depends=[numDeriv optextras Rcgmin Rvmmin setRNG]; broken = true; }; optinterv = derive2 { name="optinterv"; version="0.1.0"; sha256="1yvjb9fyqj3pfglfdwdq4kpw9i5g5i3klgpqb05xdnacbnpdxvmp"; depends=[boot distances Hmisc lattice pbapply rootSolve weights]; broken = true; }; - optiscale = derive2 { name="optiscale"; version="1.2.2"; sha256="1ay2lfk4isv0gir5diwxlx4ml5bv5qyqbwm34py85fp6bh92987r"; depends=[lattice]; broken = true; }; optrees = derive2 { name="optrees"; version="1.0"; sha256="1zqpjii8dsfs98n58qpif81ckvyxkr0661svhlbgzi19xb2vszqs"; depends=[igraph]; broken = true; }; orQA = derive2 { name="orQA"; version="0.2.1"; sha256="0vivjrpcbql42y078gi91kfpfdpv73j23jkiv8fpazzwzdi8ydqq"; depends=[genefilter gtools nlme Rcpp]; broken = true; }; ora = derive2 { name="ora"; version="2.0-1"; sha256="0albxqma220rnrpfdq3z9cawr83q1a0zzczbbcy4nijjm4mswphy"; depends=[DBI ROracle]; broken = true; }; @@ -22847,6 +23268,7 @@ in with self; { ospsuite_utils = derive2 { name="ospsuite.utils"; version="1.2.0"; sha256="16gcqnkqz0nz7mhgbnji3p1k2vv43jypx2xbcz4i4d8v1368akly"; depends=[R6]; broken = true; }; ot = derive2 { name="ot"; version="0.2.0"; sha256="0lym92hsxhfjdkh738rxlpkq084454055vgxm2b4wdhqw00jwf5y"; depends=[]; broken = true; }; otvPlots = derive2 { name="otvPlots"; version="0.2.1"; sha256="0fjx0kl9y77mazwy7lg4mxc9sg8ysvvbl4h3k6bvfpnjm5x62hff"; depends=[data_table ggplot2 gridExtra Hmisc moments quantreg scales stringi]; broken = true; }; + outerbase = derive2 { name="outerbase"; version="0.1.0"; sha256="18c73vp0fjcgg4vhf9bfxm21j8s85cmicqi5j76q0wm800qaqvm9"; depends=[Rcpp RcppArmadillo]; broken = true; }; outsider = derive2 { name="outsider"; version="0.1.1"; sha256="082yygvjs31clz8b3p59gkc26249gqp8hl1071gm6zi4vi2ng43x"; depends=[crayon curl jsonlite outsider_base remotes tibble yaml]; broken = true; }; outsider_base = derive2 { name="outsider.base"; version="0.1.4"; sha256="1wlr3a14a330r9p4lahdmgs4hbgfsp05rsbzr30djwpv21bfl03a"; depends=[callr cli crayon devtools pkgload sys tibble yaml]; broken = true; }; ouxy = derive2 { name="ouxy"; version="2.1"; sha256="0mdjxg7wm68882hbwl0gg15dld6f90xyf0s6hk2z90r34bvyky0i"; depends=[abc adephylo ape coda EasyABC geiger maps MCMCpack nlme phytools Sim_DiffProc TreeSim]; broken = true; }; @@ -22859,6 +23281,7 @@ in with self; { packagetrackr = derive2 { name="packagetrackr"; version="0.1.1"; sha256="1dgpll7ycn6c8qj9xndi2xrnwsg0mp3ifg11jnlrw4n270444hwi"; depends=[dplyr httr magrittr rappdirs]; broken = true; }; pacviz = derive2 { name="pacviz"; version="1.0.3"; sha256="17njy4m4hfkrksnicb4dphvdx7kc2fa1lr7mb7vv9cxb4ch32fph"; depends=[circlize e1071 plotrix]; broken = true; }; paf = derive2 { name="paf"; version="1.0"; sha256="0wrqn67jfrjjxwcrkka6dljgi3mdk00vfjkzzcv2v7c97gx1zvwn"; depends=[survival]; broken = true; }; + pagoo = derive2 { name="pagoo"; version="0.3.17"; sha256="0scf40vyw7lh5jh4p28894fa05nfl8n71g55w9bs9gbkszmn792k"; depends=[BiocGenerics Biostrings dendextend DT GenomicRanges ggfortify ggplot2 heatmaply magrittr plotly R6 reshape2 S4Vectors shiny shinydashboard shinyWidgets vegan]; broken = true; }; pairedCI = derive2 { name="pairedCI"; version="0.5-4"; sha256="03wf526n3bbr2ai44zwrdhbfx99pxq1nbng9wsbndrdg2ji4dar2"; depends=[]; broken = true; }; pairheatmap = derive2 { name="pairheatmap"; version="1.0.1"; sha256="1awmqr5n9gbqxadkblpxwcjl9hm73019bwwfwy1f006jpn050d6l"; depends=[]; broken = true; }; pairwiseComparisons = derive2 { name="pairwiseComparisons"; version="3.1.6"; sha256="0aiq8gr33pr5lia6cf6ak7zy5z81am5j5a0py0a2m9ljgmsgmn4s"; depends=[BayesFactor dplyr insight ipmisc parameters PMCMRplus purrr rlang WRS2]; broken = true; }; @@ -22868,7 +23291,6 @@ in with self; { palmid = derive2 { name="palmid"; version="0.0.3"; sha256="0bh0p7alcbqkingxbg8gai7bch2cv8q90sfw92y7vj857nl09fh7"; depends=[DBI dbplyr downloadthis dplyr DT ggExtra ggplot2 ggplotify ggwordcloud gridExtra htmltools htmlwidgets leaflet plotly rmarkdown RPostgreSQL scales viridisLite]; broken = true; }; pamctdp = derive2 { name="pamctdp"; version="0.3.2"; sha256="0qs8lj5g2fx5rfd0afv76x9x7wqm333qmjv6zzip6pf11dzkghyj"; depends=[ade4 FactoClass xtable]; broken = true; }; panelAR = derive2 { name="panelAR"; version="0.1"; sha256="1ka2rbl9gs65xh2y2m4aqwh5qj4szibjy101hqfmza9wmdh25gpq"; depends=[car]; broken = true; }; - panstarrs = derive2 { name="panstarrs"; version="0.2.1"; sha256="07i7v8rjvzw3qxidvjdh73q8v8rfl8xs9zg1nzphz663flqhl6sd"; depends=[bit64 checkmate curl data_table httr jsonlite]; broken = true; }; papayar = derive2 { name="papayar"; version="1.0"; sha256="11vkjhazfwfixsr6dba5jrcsr3r3mqgvj5s070b4gp70d6k1z8s5"; depends=[htmltools neurobase oro_nifti servr]; broken = true; }; parallelML = derive2 { name="parallelML"; version="1.2"; sha256="05j0rb81i8342m8drwgmgi1w30q96yf501d83cdq4zhjbchphbl1"; depends=[doParallel foreach]; broken = true; }; param6 = derive2 { name="param6"; version="0.2.4"; sha256="0h4r2l670zvsbq0cakbm7f5yc0ghaf40kby80q3ql8lwgfnay1jd"; depends=[checkmate data_table dictionar6 R6 set6]; broken = true; }; @@ -22892,14 +23314,18 @@ in with self; { pbixr = derive2 { name="pbixr"; version="0.1.4"; sha256="098fwmar56l8w5r58grirqypdmc2c4hil7bi11z18llja62fncnw"; depends=[dplyr formatR jsonlite stringr textclean xml2 zip]; broken = true; }; pca3d = derive2 { name="pca3d"; version="0.10.2"; sha256="0xpln78zdh6q7xff6pj2jaq2kafrijmlikmpnsfar2fzgkaw7jx6"; depends=[ellipse rgl]; broken = true; }; pcaBootPlot = derive2 { name="pcaBootPlot"; version="0.2.0"; sha256="1320d969znk9xvm1ylhc3a31nynhzyjpbg1fsryq72nhf8jxijaa"; depends=[FactoMineR RColorBrewer]; broken = true; }; + pcoxtime = derive2 { name="pcoxtime"; version="1.0.4"; sha256="1ill4vkkxv9iymknfkk72sff932l3jb0m70aga1skxkriyr02nwf"; depends=[doParallel foreach ggplot2 pec PermAlgo prodlim Rcpp RcppArmadillo riskRegression survival]; broken = true; }; pds3 = derive2 { name="pds3"; version="0.5.0"; sha256="1hipi4ygk30khrrslxq3m9qdichazhrl34k444shs7gi6wjx9ilr"; depends=[rly]; broken = true; }; - peacots = derive2 { name="peacots"; version="1.3"; sha256="128qpz06b0giz80lp9yq9l6pxcjglfr97yickg7z64vzzl2jilmq"; depends=[]; broken = true; }; + peRspective = derive2 { name="peRspective"; version="0.1.1"; sha256="1dca7592h9yp8lfj866hjzg0d48c84v2kd9l5bsvkw935wwxwg2w"; depends=[crayon dplyr glue httr jsonlite magrittr purrr rlang rlist stringr tibble]; broken = true; }; peakPick = derive2 { name="peakPick"; version="0.11"; sha256="1zf7ff9arm4hkdxrfhb0p8p7npd51icy773g2raaqsfys825xwhm"; depends=[matrixStats]; broken = true; }; penDvine = derive2 { name="penDvine"; version="0.2.4"; sha256="0znpvsr7zy2wgy7znha1qiajcrz1z6mypi3f5hpims33z7npa7dl"; depends=[doParallel fda foreach lattice latticeExtra Matrix quadprog TSP]; broken = true; }; penalizedLDA = derive2 { name="penalizedLDA"; version="1.1"; sha256="1bw5wiixmmg1vr3v0d59vh67f0gy2rvr30bi58skvrkb25qcjq6l"; depends=[flsa]; broken = true; }; + peptider = derive2 { name="peptider"; version="0.2.2"; sha256="109z81x6jcsx2651lclff7ak55zb1i89pyi58rxri40aamx4b1x2"; depends=[discreteRV dplyr plyr]; broken = true; }; + pequod = derive2 { name="pequod"; version="0.0-5"; sha256="0mwrgyrxgiifpnpy15qxpdrdmd7dxqihccrnj5nh8fq9fvwymamg"; depends=[car ggplot2]; broken = true; }; perccal = derive2 { name="perccal"; version="1.0"; sha256="1akak068d0g70amj5sbvnqbywzy21l4wz11mhp71b7cp4xmr9n12"; depends=[Rcpp RcppArmadillo RcppEigen]; broken = true; }; percentiles = derive2 { name="percentiles"; version="0.2.2"; sha256="08gzl2qq0856nj20bdxl3r0a7p5f4cjmvxkaqkjvq4n275ghvskq"; depends=[assertive_types assertthat dplyr R6]; broken = true; }; perfectphyloR = derive2 { name="perfectphyloR"; version="0.2.1"; sha256="1i1h5k2aqaqygd8gzq2bmz266mjzdi2mfikkz6hzmhi2il8708w9"; depends=[ape phytools Rcpp RcppArmadillo]; broken = true; }; + pergola = derive2 { name="pergola"; version="1.0"; sha256="1650ipp2b455xdkznwm7bnxvimad7nbyr9i1lg2vdh64j1qfh7gl"; depends=[seriation]; broken = true; }; permGPU = derive2 { name="permGPU"; version="0.15"; sha256="1bxydc5dw7ka45k6ban35d5xb1dw9yq9480qns8b39cc0x3acmhc"; depends=[Biobase foreach RUnit survival]; broken = true; }; persiandictionary = derive2 { name="persiandictionary"; version="1.0"; sha256="0rgi36ngpiax3p5zk4cdgf3463vgx7zg5wxscs2j7834yh37jwax"; depends=[]; broken = true; }; personograph = derive2 { name="personograph"; version="0.1.3"; sha256="07lrlbw4222l1d5rwn0hfqliyk8sqjf6ipz4n2zwcbk113bb8sy7"; depends=[grImport]; broken = true; }; @@ -22907,14 +23333,14 @@ in with self; { pguIMP = derive2 { name="pguIMP"; version="0.0.0.3"; sha256="1kdwpykyxxd1zy531smijdd1n74a12pkxc9ld4pa3jcxih71xl0y"; depends=[bbmle DataVisualizations dbscan dplyr DT e1071 finalfit ggplot2 ggthemes gridExtra Hmisc magrittr MASS mice nortest outliers plotly psych purrr R6 rcompanion readr readxl rJava rlang rmarkdown robust RWeka shiny shinydashboard shinyjs shinyWidgets stringr tibble tidyr tidyselect VIM writexl]; broken = true; }; ph2rand = derive2 { name="ph2rand"; version="0.1.0"; sha256="0k6azygcvzkirjx3vpx6kbhax1yai8r467kmmnvhh3p0v46mc5zp"; depends=[dplyr ggplot2 Rcpp scales tibble tidyr]; broken = true; }; phenability = derive2 { name="phenability"; version="2.0"; sha256="0can8qgdpfr4h6jfg23cnwh7hhmwv6538wg2jla9w138la7rhpd1"; depends=[calibrate]; broken = true; }; - phonfieldwork = derive2 { name="phonfieldwork"; version="0.0.11"; sha256="0a5qnl1r8g0h1nsp22awp6hy0lkdi6adc729grpz8mbniz4vdlkc"; depends=[phonTools rmarkdown tuneR uchardet xml2]; broken = true; }; phyloland = derive2 { name="phyloland"; version="1.3"; sha256="10g40m6n2s4qvnzlqcwpy3k0j7bxdp79f586jj910b8p00ymrksp"; depends=[ape]; broken = true; }; physx = derive2 { name="physx"; version="1.0"; sha256="1b6bx08jzfg4pxicawkn013bqrvqkp19pigxl3iwjrqclvi8mx73"; depends=[celestial cubature data_table docore MASS pracma Rcpp]; broken = true; }; phytotools = derive2 { name="phytotools"; version="1.0"; sha256="049znviv2vvzv23biy1l28axm7bc7biwmq4bnn0cnjqgkk48ysz3"; depends=[FME insol]; broken = true; }; + piRF = derive2 { name="piRF"; version="0.1.0"; sha256="04k09ylc6hqw57dlv7sfnisn1167dr550y1j9xl7prvlf3jksg06"; depends=[Rdpack]; broken = true; }; piglet = derive2 { name="piglet"; version="1.0.1"; sha256="09l2qj8naalk8ywkmx0wmk82jllyd60g373jvy619kz7ad9dc1xp"; depends=[alakazam Biostrings circlize ComplexHeatmap data_table DECIPHER dendextend dplyr ggmsa ggplot2 jsonlite magrittr R6 RColorBrewer rlang splitstackshape tigger zen4R]; broken = true; }; pinbasic = derive2 { name="pinbasic"; version="1.2.2"; sha256="0mcw68wrixz2jf62nfifdgg8bnp4h1p3byivz28wi61blj8iaa75"; depends=[fastcluster ggplot2 lubridate Rcpp reshape2 scales]; broken = true; }; pinnacle_API = derive2 { name="pinnacle.API"; version="2.3.3"; sha256="1b6adns1xr3cgcj2mdjvl16cm2vjjgsj2l8m2c47plyc5jh05qmb"; depends=[data_table httr jsonlite magrittr openssl purrr rjson uuid]; broken = true; }; - pipenostics = derive2 { name="pipenostics"; version="0.1.7"; sha256="0c0qnh8kjgnmsg8arj7jhpdyjcdm58j9lzwi0yvl7ygk4k2klgv3"; depends=[checkmate]; broken = true; }; + pipeGS = derive2 { name="pipeGS"; version="0.4"; sha256="0ki4i70r5f195b4jfv3hxlxz3zj57mhy2yf4984bwr11impilz5w"; depends=[]; broken = true; }; pirate = derive2 { name="pirate"; version="1.0.0"; sha256="160mmyqdwbc4g7n7q9i4xcqp6h9bcpcz7vavsgdcpvs2mjfhfpjx"; depends=[ggplot2 MASS plyr Rcpp RcppArmadillo]; broken = true; }; pirouette = derive2 { name="pirouette"; version="1.6.9"; sha256="1khcfic386pyhxxyzv3c28krc6rpy334cdk1adawx7c87pyvsp16"; depends=[ape babette beastier beautier DDD forcats magrittr mauricer mcbette nodeSub phangorn phytools plyr pryr readr stringr TESS tibble tidyr tracerer xtable]; broken = true; }; pitchRx = derive2 { name="pitchRx"; version="1.8.2"; sha256="0lg0xab40r8wzrww986l5q9jkg1m83g4bhsbh0kr7f2rv90av662"; depends=[ggplot2 hexbin MASS mgcv plyr XML2R]; broken = true; }; @@ -22941,6 +23367,7 @@ in with self; { poems = derive2 { name="poems"; version="1.1.0"; sha256="123sq2ixm8qzj6jc95skwl6rr4hiy7dcf34x4mrhqv5sf7k41yzs"; depends=[abc doParallel foreach gdistance geosphere lhs metRology R6 raster trend]; broken = true; }; poio = derive2 { name="poio"; version="0.0-4"; sha256="12d47hn9rsx2n0fl107dpswfklnh8nkm0kspcxf7yfljayvxr474"; depends=[assertive_base assertive_files assertive_properties assertive_sets assertive_strings assertive_types devtools digest dplyr magrittr purrr R6 stringi tibble whoami]; broken = true; }; poisson = derive2 { name="poisson"; version="1.0"; sha256="1diyf1b84sr6iai3ghd3kcp6fc6w7fan49wzs1lzvxxsmp15ag2d"; depends=[]; broken = true; }; + poissonMT = derive2 { name="poissonMT"; version="0.3-5"; sha256="14qkc8qz3423b13gp6gsp8cbb1nv9wwjjfa4i9zc15qy5i99ha26"; depends=[checkmate MASS robcbi robustbase]; broken = true; }; poker = derive2 { name="poker"; version="0.8.8"; sha256="14ik77440z22k4kwq0p1fn7adzi0p8mh8j8hd7ayinvrab4b5r85"; depends=[]; broken = true; }; polyPK = derive2 { name="polyPK"; version="3.1.0"; sha256="0cb83sq8iz4swr73vwhh8n4k62p6321nsy1sz5fba0wiicycxf55"; depends=[circlize corrplot gplots Hmisc impute imputeLCMD mixOmics pcaMethods pkr plyr ropls sqldf xlsx]; broken = true; }; polyfreqs = derive2 { name="polyfreqs"; version="1.0.2"; sha256="13859vbpys5yj1qiapyzv9wlvi6x6k0rm335bsi1v07ch3x2bh3b"; depends=[Rcpp]; broken = true; }; @@ -22976,6 +23403,8 @@ in with self; { protoclass = derive2 { name="protoclass"; version="1.0"; sha256="17d2m6r1shgb47v8mwdg1a7f5h29m5l7f5m0nsmv0xc90s9cpvk8"; depends=[class]; broken = true; }; psda = derive2 { name="psda"; version="1.4.0"; sha256="0if42szf0gkgdl7d02x43i0fdb6hp47j918vx06aw7qcw6a8j3k2"; depends=[ggplot2 plyr raster rgeos sp]; broken = true; }; pse = derive2 { name="pse"; version="0.4.7"; sha256="0kigfzsvx3gw7jwym4f19dydwwarwxgmha7hpy54gg0zzi4k9icl"; depends=[boot Hmisc]; broken = true; }; + pseudorank = derive2 { name="pseudorank"; version="1.0.1"; sha256="1hjcvl38di1digkqg7nysd7bkljz1v7y54z2rz10fyk9lyp9mpmy"; depends=[doBy Rcpp]; broken = true; }; + pspline_inference = derive2 { name="pspline.inference"; version="1.0.4"; sha256="1ijz642igm27xg3928w9ffvykai26aar5awbcilrjbkm6fk7yd4w"; depends=[assertthat dplyr magrittr mgcv plotrix plyr reshape2 rlang]; broken = true; }; psr = derive2 { name="psr"; version="0.1.0"; sha256="0lnszaspilk88hmdjbgid7nh0zrpc57mymchva4kqc3cpckw247a"; depends=[dplyr psych tidyr]; broken = true; }; psre = derive2 { name="psre"; version="0.1.2"; sha256="0xk8aigj8x3skg5ikrbpmfh3gfw0yd3gn0xlpwjgkhhj706jvri3"; depends=[boot car cowplot DAMisc dplyr fANCOVA ggplot2 ggrepel lawstat magrittr MASS metap mgcv multcomp nortest rlang sm tibble tidyr]; broken = true; }; psrwe = derive2 { name="psrwe"; version="3.1"; sha256="0gmsh0294jzazxw4ss6jys92dckgfh4fqirfcdi3pzr6a7nnam8s"; depends=[BH cowplot dplyr ggplot2 randomForest Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders survival]; broken = true; }; @@ -22983,30 +23412,31 @@ in with self; { psychtm = derive2 { name="psychtm"; version="2021.1.0"; sha256="1qx3ks23wyi7c53p05jq2w18qz0kym0j43japz9sgj6zyh0c5649"; depends=[coda label_switching Rcpp RcppArmadillo RcppProgress rlang tibble]; broken = true; }; psymonitor = derive2 { name="psymonitor"; version="0.0.2"; sha256="09288w2bk5jhnbyj516jqn5qb33yqqg5kqbg6ylqk7anlq2yg2sl"; depends=[doParallel foreach magrittr]; broken = true; }; psyosphere = derive2 { name="psyosphere"; version="0.1.6"; sha256="1hcas3jk2n11lyw1ysmci0sysxf7qg9h2msqqg7q9nqp5gbf90np"; depends=[geosphere ggplot2 Hmisc lubridate plyr rgdal RgoogleMaps sp]; broken = true; }; + ptest = derive2 { name="ptest"; version="1.0-8"; sha256="1d30a23yknf7xgqj8adgr36pnh9dpffl1v5fq682f26fk3ss30qp"; depends=[quantreg]; broken = true; }; ptf = derive2 { name="ptf"; version="0.0.1"; sha256="1s9nzn823z2capil83vcfs7frg8f6bpygx8aw1zz4sacnhvryr52"; depends=[Matrix plyr rARPACK Rcpp RcppArmadillo]; broken = true; }; pts2polys = derive2 { name="pts2polys"; version="0.1.3"; sha256="0rmgryv0vds20npvaqvvwrhrx0grfcz9qwdy2w3bx945r0chhw39"; depends=[Rcpp]; broken = true; }; ptsuite = derive2 { name="ptsuite"; version="1.0.0"; sha256="1df273p8v6zvhy2jj6imhjigwj77grx6sxqmg0sidxwqny5d1d9c"; depends=[Rcpp]; broken = true; }; pubchunks = derive2 { name="pubchunks"; version="0.3.0"; sha256="14jzl0ra0d68s246a9jhfgp1wyy9g7d0rzahvl97crkklld1crvx"; depends=[data_table rcrossref xml2]; broken = true; }; + pulseTD = derive2 { name="pulseTD"; version="0.1.0"; sha256="0sdnswinpnm0vvplrh5gl9gx4p03dx175mqxzg5r52rkzd3rfbsr"; depends=[AnnotationDbi Biobase GenomicAlignments GenomicFeatures ggplot2 Rsamtools S4Vectors SummarizedExperiment]; broken = true; }; pvsR = derive2 { name="pvsR"; version="0.3"; sha256="1ijmqlcsc8z0aphdd3j37ci8yqsy50wnr2fwn7h8fxbyd12ax2nj"; depends=[httr nnet XML]; broken = true; }; qLearn = derive2 { name="qLearn"; version="1.0"; sha256="1ilxmgazm8gjz8c1hhbp4fccibnvnalxrag8b0rn081zsqmhf094"; depends=[]; broken = true; }; - qMRI = derive2 { name="qMRI"; version="1.2.7"; sha256="0jiwvnhmm4zwqydqkzsygwkm23nc0zzjz5w7yckwdfc5zafch4hk"; depends=[adimpro aws awsMethods oro_nifti stringr]; broken = true; }; qat = derive2 { name="qat"; version="0.74"; sha256="04n1jnbkf9dzafjh1n5d4q9p7hvyhnr63nmgl51jqxcf3nan5rlx"; depends=[boot fields gdata gplots moments ncdf4 XML]; broken = true; }; + qgtools = derive2 { name="qgtools"; version="2.0"; sha256="1gj7vbam53yr2rnxzfxng1p107bjcyjmyj47cxyzaiv19pznkbmw"; depends=[]; broken = true; }; qha = derive2 { name="qha"; version="0.0.8"; sha256="0sdf6g6884wn73i237xkwszg2mq8xddhvyy225qzpplh5za4pnhl"; depends=[ade4 FactoClass FactoMineR]; broken = true; }; - qlcMatrix = derive2 { name="qlcMatrix"; version="0.9.7"; sha256="0iqkcvvy8rxlk0s83sjq57dd6fadb18p5z31lzy0gnzv1hsy1x8y"; depends=[docopt Matrix slam sparsesvd]; broken = true; }; qmix = derive2 { name="qmix"; version="0.1.2.0"; sha256="172lhvj7adphxq9gws2i9lysc9bj1wpk60f4hf2h5sisnli15v0x"; depends=[BH Formula Rcpp RcppEigen rstan StanHeaders]; broken = true; }; qoma_smuggler = derive2 { name="qoma.smuggler"; version="0.0.1"; sha256="03p9i0kr6i3adpb9lcszcmdr9p26nfy7f8hw2sbydazglaw4hscr"; depends=[lubridate rhli tibble]; broken = true; }; qqr = derive2 { name="qqr"; version="0.0.1"; sha256="1vi4nbm356vahm4hnvy686nysbn4n63p9cjd4i9dm73lhsf9ilmn"; depends=[dplyr rvest stringr tidyverse xml2]; broken = true; }; qrage = derive2 { name="qrage"; version="1.0"; sha256="00j74bnkcpp0h8v44jwzj67q9aaw47ajc2fvgr6dckj9rymydinl"; depends=[htmlwidgets]; broken = true; }; qrandom = derive2 { name="qrandom"; version="1.2.6"; sha256="00s2c3f9ji27drfyz674bszq1a7xxx8mx0m9g5vrzk9hbm1kcsfj"; depends=[curl jsonlite Rmpfr]; broken = true; }; - qtlDesign = derive2 { name="qtlDesign"; version="0.941"; sha256="138yi85i5xiaqrns4v2hw46b731bdgnb301wg2h4cfrxvrw4l0d5"; depends=[]; broken = true; }; - qtlpoly = derive2 { name="qtlpoly"; version="0.2.3"; sha256="10a9zcsf2f6hkigwa3gpck2vg2pf9qa1z19kpk9kxbv4j1hja23s"; depends=[abind CompQuadForm ggplot2 gtools MASS Matrix mvtnorm nlme quadprog Rcpp RcppArmadillo RcppProgress RLRsim]; broken = true; }; quad = derive2 { name="quad"; version="1.0"; sha256="0fak12l19f260k0ygh6zimx8dabzsv7a9i2njw8hnfcs3ndffhv5"; depends=[PearsonDS]; broken = true; }; qualCI = derive2 { name="qualCI"; version="0.1"; sha256="09mzsy5ryyrn1gz9ahrh95cpfk7g09pmjjy0m82fh4xc7j5w6kpf"; depends=[combinat]; broken = true; }; qualypsoss = derive2 { name="qualypsoss"; version="1.1.1"; sha256="1kcdmbj0wyycp7i4d3hb1addnl1c7ndkc6qnbnds0vcfk1dfxd8h"; depends=[doParallel foreach ggthemes MASS mvtnorm QUALYPSO]; broken = true; }; quantable = derive2 { name="quantable"; version="0.3.6"; sha256="15q4phc2j7aihl8f4qzpdwxcvshq2cfzkfcxc8k4qypsxk9a00sb"; depends=[caret dplyr e1071 ggplot2 ggrepel gplots Matrix plyr pROC RColorBrewer readr reshape2 rlang scales stringr tibble tidyr]; broken = true; }; + quhomology = derive2 { name="quhomology"; version="1.1.1"; sha256="0wiih00zk4682wy1r4nyifh76h5bnvl3f785wjzmrwylnfy951l3"; depends=[MASS numbers]; broken = true; }; quickerstats = derive2 { name="quickerstats"; version="0.0.1"; sha256="0jlczz042701p6j4m60k425m9x3q88m27mmf62ngz80dylcl2fdx"; depends=[curl httr readr tibble]; broken = true; }; quickmapr = derive2 { name="quickmapr"; version="0.3.0"; sha256="0962qm8ak0wpqld8nrb8rvvb78743zfrfsq2xrwdlql681j2nv8c"; depends=[httr raster rgdal rgeos sf sp]; broken = true; }; quokar = derive2 { name="quokar"; version="0.1.0"; sha256="1qnl3x1aa665xpyb3ac07xrnnjdwbmj645p103144k5is5b8likc"; depends=[ald ALDqr bayesQR dplyr ggplot2 GIGrvg gridExtra knitr magrittr MCMCpack purrr quantreg robustbase tidyr]; broken = true; }; + qut = derive2 { name="qut"; version="2.2"; sha256="1jsp3sv1631ar1sad8fy4l60ar2pbi20g50yz9mhs83427n3l63b"; depends=[flare glmnet lars Matrix]; broken = true; }; r2dRue = derive2 { name="r2dRue"; version="1.0.4"; sha256="1apdq7zj5fhs349wm9g6y06nn33x24pg3gdp4z1frd18qlacf8z5"; depends=[matrixStats rgdal sp]; broken = true; }; r511 = derive2 { name="r511"; version="0.1.1"; sha256="1njsnjf0746cv6x7fznq4cg556fczqcfawwb869r3w9zv0zj1iy9"; depends=[assertthat dplyr httr tibble xml2]; broken = true; }; rAltmetric = derive2 { name="rAltmetric"; version="0.7.0"; sha256="1vbvjv273vg3pi30vxxa2bivlajfsbqrzflk3payp6ym9myi27mg"; depends=[httr jsonlite rlist]; broken = true; }; @@ -23027,7 +23457,6 @@ in with self; { rIP = derive2 { name="rIP"; version="1.2.0"; sha256="1f3gbd3ij047n0rh4a7yy6wdjz3b89rki7zaz4y9zgw6bad6ylkl"; depends=[amerika dplyr httr iptools jsonlite]; broken = true; }; rJPSGCS = derive2 { name="rJPSGCS"; version="0.2-10"; sha256="0a00s10yp22fkvk67dkq43sbphcqla65x9j4qpv076bmdchn7arw"; depends=[chopsticks rJava]; broken = true; }; rJython = derive2 { name="rJython"; version="0.0-4"; sha256="13fpcw37cca738v9idqgi3gv9avfkfwfacxj54p2c4wyg46ghnah"; depends=[rJava rjson]; broken = true; }; - rKolada = derive2 { name="rKolada"; version="0.2.1"; sha256="1c1ci6dn3yqgp7qm1fih8dlq67dpbc1wlxhzcrzs0zzign47vgvd"; depends=[dplyr glue httr jsonlite magrittr purrr rlang stringr tibble tidyr urltools]; broken = true; }; rLiDAR = derive2 { name="rLiDAR"; version="0.1.5"; sha256="0sw79zr7hdwprlwijlg6qmn7pmpcnhxfr7ycdz09058c0kd815h8"; depends=[bitops deldir geometry plyr raster rgeos rgl sp spatstat_geom]; broken = true; }; rMisbeta = derive2 { name="rMisbeta"; version="1.0"; sha256="1h4vilnndl0gnz9z0sgbywp4zy44718zpiqcqigbjbd4lymi0y61"; depends=[ROC]; broken = true; }; rModeling = derive2 { name="rModeling"; version="0.0.3"; sha256="0xrjxayp59f31wwcqqkzs5my2j2lpbv1f4pp709fmqxz02vbdzhv"; depends=[caret e1071 MASS]; broken = true; }; @@ -23036,6 +23465,8 @@ in with self; { rSQM = derive2 { name="rSQM"; version="1.3.14"; sha256="0m69n2pnfv2085dln6p149a5gw0gif9xk00xmad5s9j68hwjdmym"; depends=[dplyr EcoHydRology ggplot2 gsubfn mise ncdf4 qmap reshape2 stringr yaml zoo]; broken = true; }; rTLS = derive2 { name="rTLS"; version="0.2.5.6"; sha256="0xjcqmjq3s9bfzfzndj2fi3830c3p1rrjr511amp186wmfnslmyd"; depends=[alphashape3d boot data_table doSNOW foreach Rcpp RcppArmadillo RcppHNSW RcppProgress rgeos rgl sp]; broken = true; }; rWBclimate = derive2 { name="rWBclimate"; version="0.1.3"; sha256="0vs56hx7a85pw4jx8nb8bdlr9dbkl4zdhzhqsm0505xc3qz18vxh"; depends=[ggplot2 httr jsonlite plyr reshape2 rgdal sp]; broken = true; }; + rWind = derive2 { name="rWind"; version="1.1.7"; sha256="1dvzkhi9hbxd9wvggcbkfx7hxaxjssbmfnqsc7qakj8pkbvr7nax"; depends=[gdistance lubridate Matrix raster]; broken = true; }; + rabhit = derive2 { name="rabhit"; version="0.2.5"; sha256="0c513sbldd85snww412k3c5rhmzd5k89s2wq4d713qsvzsh4v1xl"; depends=[alakazam cowplot data_table dendextend dplyr fastmatch ggdendro ggplot2 gridExtra gtable gtools htmlwidgets plotly plyr RColorBrewer readr reshape2 rlang splitstackshape stringi tidyr tigger]; broken = true; }; radix = derive2 { name="radix"; version="0.6"; sha256="0290n0yax8649srdjbq4439h0d9f6jsmxayyhp86igcnszcxilnb"; depends=[base64enc bookdown digest downloader htmltools jsonlite knitr lubridate mime png progress rmarkdown rprojroot rstudioapi stringr whisker xfun xml2 yaml]; broken = true; }; radmixture = derive2 { name="radmixture"; version="0.0.1"; sha256="0rs60xjd43lg5c9972qhpg6bsqfg2578qvrz7gz3bdip10jb1ryj"; depends=[magrittr MCMCpack plyr quadprog]; broken = true; }; ragt2ridges = derive2 { name="ragt2ridges"; version="0.3.4"; sha256="17i3z0p3a4dqa0bch5l1r830w5nlxhdg71y82jipp6cfiwli588z"; depends=[abind Biobase CGHbase expm fdrtool igraph MASS Matrix mvtnorm rags2ridges Rcpp RcppArmadillo]; broken = true; }; @@ -23051,7 +23482,6 @@ in with self; { rattle_data = derive2 { name="rattle.data"; version="1.0.2"; sha256="0cnmyzvy23jc4vz521c3jg0w4165waycvy5014l5773fy19zq75c"; depends=[]; broken = true; }; ravedash = derive2 { name="ravedash"; version="0.1.2"; sha256="1hlsg2dcbsk8gpiw7s66n39jzjzdsh0hv9h4vzmasq2mvwjfqyaz"; depends=[dipsaus htmlwidgets logger raveio rpymat shidashi shiny shinyvalidate shinyWidgets threeBrain]; broken = true; }; raveio = derive2 { name="raveio"; version="0.9.0"; sha256="13nzhhlwv1wmhgbgsdpznhcvj6k289dsmcirx7a803w9yqk9ssnd"; depends=[callr data_table dipsaus edfReader filearray fst globals glue hdf5r jsonlite promises R_matlab R6 ravetools remotes rpymat stringr targets threeBrain yaml]; broken = true; }; - ravetools = derive2 { name="ravetools"; version="0.1.3"; sha256="145f86yzd492l6q3nqqjvgykr3riw6v86h80wd84ca1xian5lhd3"; depends=[digest filearray pracma R6 Rcpp RNiftyReg Rvcg signal waveslim]; broken = true; }; rawr = derive2 { name="rawr"; version="0.1.3"; sha256="0k0x1pmxs73j6dmjg33n4hhwjwzpnhzbmmmjza6kw7hj6lfmipx4"; depends=[clipr dplyr jsonlite rvest stringr xml2]; broken = true; }; rbace = derive2 { name="rbace"; version="0.2.2"; sha256="04jcbrcp0l1v2q8hhwr5w72spdja8r0fw71v68kx39yigy7m1sgp"; depends=[crul data_table tibble xml2]; broken = true; }; rbart = derive2 { name="rbart"; version="1.0"; sha256="1byfm1ycw9nfhdblqklyn8pxn6b9q5fa3inbgfpynqpsid97ig35"; depends=[Rcpp]; broken = true; }; @@ -23077,19 +23507,23 @@ in with self; { rdaemon = derive2 { name="rdaemon"; version="1.0.6"; sha256="1qr6v7kgk9nd5qp96667x51331xmpp1yz1r190dgd1fqigw735s5"; depends=[base64enc futile_logger Rcpp]; broken = true; }; rdddr = derive2 { name="rdddr"; version="1.0.0"; sha256="0biq1nxfhkbmay70hfp5yg6zakzcdr7rp0x2zpmyq200cwyyr6lm"; depends=[broom dataverse DeclareDesign dplyr estimatr fabricatr generics ggplot2 prediction purrr randomizr readr rlang tibble tidyr]; broken = true; }; rdetools = derive2 { name="rdetools"; version="1.0"; sha256="0pkl990viv7ifr7ihgdcsww93sk2wlzp2cg931wywagfp8dijd02"; depends=[]; broken = true; }; - rdracor = derive2 { name="rdracor"; version="0.7.6"; sha256="1zjd5w2kmpqbnm4j4w72r8bdy3hnvbvvckv3azdjsarbhnpqyfvw"; depends=[data_table httr igraph jsonlite purrr Rdpack stringr tibble tidyr xml2]; broken = true; }; + rdoc = derive2 { name="rdoc"; version="0.1.0"; sha256="0ac6413jyrr7m25z30n3bpiafsvjx38ik6rrjzsiqxrfp41j6l9x"; depends=[cli crayon prettycode R6]; broken = true; }; rdrop2 = derive2 { name="rdrop2"; version="0.8.2.1"; sha256="02rhcq1vn349ddjkqamxb0wjb3z3m4wzkvin1mprcz4fzrjxgbdr"; depends=[assertive digest dplyr httr jsonlite magrittr purrr]; broken = true; }; - read_dbc = derive2 { name="read.dbc"; version="1.0.6"; sha256="0v10fnia615hj6kw3504v455f6k4syy2pilbmvcspk5r6lfs1pcg"; depends=[foreign]; broken = true; }; + rdss = derive2 { name="rdss"; version="1.0.8"; sha256="0wzmiq53x5mid2lqvqgjgp8m7kz2wzlwkki1q561qmqbkkgk4ma8"; depends=[broom dataverse dplyr estimatr generics ggplot2 prediction purrr randomizr readr rlang tibble tidyr]; broken = true; }; readSX = derive2 { name="readSX"; version="0.8.4"; sha256="0g8nwm1vk8spiffnb93a63vq14q6xm2b9wy708qfkriijrn8n52i"; depends=[cli readxl rlang]; broken = true; }; + readmnist = derive2 { name="readmnist"; version="1.0.6"; sha256="0f2kp5r04k47gpvbj8x13c47zsis3bw3y8f5f37sh6jggblqr004"; depends=[]; broken = true; }; readthat = derive2 { name="readthat"; version="0.0.1"; sha256="04vnpvfa8in3gxi6nv3si59hr8hj17wq3a5n8rnpiaczg46qr1dr"; depends=[curl Rcpp]; broken = true; }; + readysignal = derive2 { name="readysignal"; version="0.0.9"; sha256="0fhm3xdxilmvs3r6vlbzydfq5xk0vxdkmpw49haknlwpvb18r403"; depends=[httr jsonlite progress rvest]; broken = true; }; reclin = derive2 { name="reclin"; version="0.1.2"; sha256="0bskmlysc12g5invscr0vvshy8bp1gxjx4wihwbbfzmnk2951qrc"; depends=[dplyr ldat lpSolve lvec Rcpp stringdist]; broken = true; }; recoder = derive2 { name="recoder"; version="0.1"; sha256="0wh0lqp7hfd4lx2xnmszv1m932ax87k810aqxdb6liwbmvwqnfgd"; depends=[stringr]; broken = true; }; + recom = derive2 { name="recom"; version="1.0"; sha256="13g8wq4qaa850r7q09cr9x0brxki98h86cq83573jcv4lh3r97yq"; depends=[Rcpp]; broken = true; }; + redR = derive2 { name="redR"; version="1.0.1"; sha256="0bd1jzjip6p449m9ysi4kybxqljh2wj8z9mrgyk1cy08bjivd1cd"; depends=[imager]; broken = true; }; refnr = derive2 { name="refnr"; version="0.1.0"; sha256="1gjjzxpyxm1kf1pqk99bd7f2j85rzmww3r1268bccivf19rs881i"; depends=[]; broken = true; }; + regcensus = derive2 { name="regcensus"; version="1.0.1"; sha256="0sab5pwbnc06vds23nzcargk8igfngsyqhvnh0q40g95b55fm0c8"; depends=[dplyr httr jsonlite stringr tidyverse]; broken = true; }; regexTestR = derive2 { name="regexTestR"; version="0.1.3"; sha256="0nnp2xlrrywpi1lmj8ymsjgiqvq8777hhdgcwjq549m7whfw6lsg"; depends=[config data_table DT golem htmltools pkgload processx purrr RColorBrewer rvest shiny shinyBS shinythemes stringr tidyr xml2]; broken = true; }; regfilter = derive2 { name="regfilter"; version="1.1.1"; sha256="0s5gijp6pgqh9r57mz0kykkbrdvkc3wxbpz9wh15539rgkplynb6"; depends=[arules e1071 entropy FNN gbm ggplot2 infotheo modelr nnet randomForest rpart sf UBL]; broken = true; }; regpro = derive2 { name="regpro"; version="0.1.1"; sha256="02axbq63hsqwg3q2ixr0lpsdai9q6wj57s5k1343q9m0pw90vr73"; depends=[denpro]; broken = true; }; regweight = derive2 { name="regweight"; version="1.0.2"; sha256="1ziqii9xlp86n6ga99glwnh2kf6pkm8m326yra40yf2w3h180pbm"; depends=[checkmate dplyr ggplot2 glue gt lpdensity rlang scales tidyr tidyselect]; broken = true; }; - relMix = derive2 { name="relMix"; version="1.3.3"; sha256="03zzmsx2i7ib1mhdfk5igvr1winl9g2dfjqz2kzvcx3rl7l6hjym"; depends=[Familias gWidgets2 gWidgets2tcltk]; broken = true; }; rela = derive2 { name="rela"; version="4.1"; sha256="00ksm7zh1mpd2d5c5d823id3sxj0h3x0ccg6a40fadibvr1ay3ny"; depends=[]; broken = true; }; relaxo = derive2 { name="relaxo"; version="0.1-2"; sha256="1rzmq7q3j271s6qwwrmwidv0vxcjpgjhyiqgr6fkczkai2lbnd8x"; depends=[lars]; broken = true; }; relen = derive2 { name="relen"; version="1.0.1"; sha256="0br7c3j30a1yc61pyinmk5lvk8zw9rivd0z2096g6crgmbzix8ml"; depends=[]; broken = true; }; @@ -23098,6 +23532,7 @@ in with self; { renderthis = derive2 { name="renderthis"; version="0.2.0"; sha256="1hvqwq2w30j29pwjm498mza9zxg8ga5bizm795hmdbz1k30m4j3p"; depends=[cli digest fs jsonlite magick pagedown progress quarto rmarkdown withr xaringan zip]; broken = true; }; replicationInterval = derive2 { name="replicationInterval"; version="2.0.1"; sha256="1jyvyqr8r2fs1cmbz7zjcc8p116bnkslvx27pqi92y5pxgqvsqvr"; depends=[ggplot2 MASS MBESS pbapply]; broken = true; }; rescue = derive2 { name="rescue"; version="1.0.3"; sha256="0wq4ka1a7yhbjwr99ngykhn2r3czn3rqi63r6jn46pz15vnicwad"; depends=[data_table dbscan igraph irlba Matrix reticulate]; broken = true; }; + restorepoint = derive2 { name="restorepoint"; version="0.2"; sha256="0pjp5dvycvfg75hhj8lrr2lrjn6n6bqj0ziwyd87lyi15b9j8w4s"; depends=[]; broken = true; }; restrictedMVN = derive2 { name="restrictedMVN"; version="1.0"; sha256="0qynkg244gzq0yjb0716w7g1sxdq66i11ss8jij86h2mz3ykj137"; depends=[MASS]; broken = true; }; retistruct = derive2 { name="retistruct"; version="0.6.3"; sha256="1zij37n2ja3yx6n1agdkb3lj42p01parcg6djv60bng9c2qq0wsl"; depends=[foreign geometry png R_matlab R6 rgl RImageJROI RTriangle sp ttutils]; broken = true; }; retractcheck = derive2 { name="retractcheck"; version="1.0.0"; sha256="1c4p8afh9g359s560sswcys3manc0lqvk0aqgvd09p4rpzls2dm7"; depends=[httr plyr textreadr]; broken = true; }; @@ -23118,7 +23553,6 @@ in with self; { rgudhi = derive2 { name="rgudhi"; version="0.2.0"; sha256="0biljmhg95wlfhhr9n8idggwzwmhal5idsm2ppgxxx8y1b8cmxbd"; depends=[cli curl dplyr fs ggplot2 purrr R6 Rdpack reticulate rlang tibble withr]; broken = true; }; rhli = derive2 { name="rhli"; version="0.0.2"; sha256="1mb6bizqkg7zd8nc5a81fw7d0y0vcv6zh6y28k9vikqmc5l1n21q"; depends=[]; broken = true; }; ri = derive2 { name="ri"; version="0.9"; sha256="00y01n9cx95bjhdpnh7vi0xd5p6al3sxbjszbyxafn7m9mygmnhv"; depends=[]; broken = true; }; - riAFTBART = derive2 { name="riAFTBART"; version="0.3.2"; sha256="0nj7xqvb711fi764dk7v60sr5s5955cglyf54zkdc6ax365xlnj0"; depends=[BART cowplot dbarts doParallel dplyr foreach ggplot2 magrittr MASS MCMCpack msm nnet randomForest RRF stringr survival tidyr twang]; broken = true; }; rich = derive2 { name="rich"; version="1.0.1"; sha256="0kasr9gb85qhngfayqy3fvrsr0a066krwxsx21nsxcnss0mrqygr"; depends=[boot vegan]; broken = true; }; rijkspalette = derive2 { name="rijkspalette"; version="1.0.2"; sha256="00726q8s36si08ghd9sgi7ikadcj11xqwhgv8f3cml6lvwz7ppzz"; depends=[crayon imager jsonlite]; broken = true; }; riot = derive2 { name="riot"; version="1.1.0"; sha256="1a5w6m443rc16fbzkmrrsisac92ch2x2psvywl5i60hlr0r88d60"; depends=[cli dplyr fs purrr Rcpp readr rlang tibble]; broken = true; }; @@ -23135,11 +23569,17 @@ in with self; { rmangal = derive2 { name="rmangal"; version="2.1.3"; sha256="1sh3ggbp5f4p8jqjr7l5an32ikr4gcdll2d7gl7mqjayq497c865"; depends=[httr igraph jsonlite memoise]; broken = true; }; rmdcev = derive2 { name="rmdcev"; version="1.2.5"; sha256="1080351hs89zsm7y9yvy660r87qa643zsxyzhhfw0q0nzgyidfya"; depends=[BH dplyr Formula purrr Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tibble tidyr]; broken = true; }; rmdshower = derive2 { name="rmdshower"; version="2.1.1"; sha256="1sjpi5ils31adii51gaa8ly7x93l9ganp6in8rsln6si4jc2ppg9"; depends=[rmarkdown]; broken = true; }; + rmonad = derive2 { name="rmonad"; version="0.7.0"; sha256="1vjx8kk57xk7c2a05c6kn75n17842ya7j41hqj3wmgq8yvaxrngx"; depends=[digest glue igraph magrittr pryr]; broken = true; }; rms_gof = derive2 { name="rms.gof"; version="1.0"; sha256="1n0h3nrp11f2x70mfjxpk2f3g4vwjaf4476pjjwy49smxxlxwz82"; depends=[]; broken = true; }; + rnaCrosslinkOO = derive2 { name="rnaCrosslinkOO"; version="0.1.2"; sha256="146595ib0730ppx4dxfq7vmvxwgf1vs1w3vkhb8ylrc8id3lki4z"; depends=[ClassDiscovery doParallel foreach GenomicRanges ggplot2 ggrepel heatmap3 igraph IRanges MASS mixtools patchwork R4RNA RColorBrewer reshape2 RRNA S4Vectors seqinr tidyverse TopDom]; broken = true; }; rngwell19937 = derive2 { name="rngwell19937"; version="0.6-0"; sha256="0m6icqf7nckdxxvmqvwfkrpjs10hc7l8xisc65q8iqpnpwl5p2f6"; depends=[]; broken = true; }; rnoaa = derive2 { name="rnoaa"; version="1.4.0"; sha256="15rhnvzzfdxc37j4yixp21hw5p9ijg7c0la4cyrxj57wnc1r71m1"; depends=[crul data_table dplyr geonames ggplot2 gridExtra hoardr isdparser jsonlite lubridate scales tibble tidyr tidyselect XML xml2]; broken = true; }; robFitConGraph = derive2 { name="robFitConGraph"; version="0.4.1"; sha256="0w5x4ndv5r8v7ji3dhmch0di4krphxrclyidfg5b3qbmn1hlhlih"; depends=[Rcpp RcppArmadillo]; broken = true; }; + robcbi = derive2 { name="robcbi"; version="1.1-4"; sha256="17i1isd9j14qbrrp3vqslwi1iig9m10hxyhzmjkpffcm2hsjddwc"; depends=[robeth]; broken = true; }; + robcp = derive2 { name="robcp"; version="0.3.7"; sha256="0v5sb8q7knzs8qb4a8cmnm6n9x52xffcjhcgirlqmgm3ix1cl3mb"; depends=[Rcpp]; broken = true; }; + robeth = derive2 { name="robeth"; version="2.7-8"; sha256="0f5j9vc1d5nzisqa54ws3l7gn3ccnxg70ybl4fnawi531ih3rw60"; depends=[]; broken = true; }; robets = derive2 { name="robets"; version="1.4"; sha256="0lvzfpv6569pjysblhadd05sglx0qvyr9wipb9cpiya4a1992n61"; depends=[forecast Rcpp]; broken = true; }; + robusTest = derive2 { name="robusTest"; version="1.0.1"; sha256="0rgm0cl47c8ddhbl0da3jdrkxhgy3jqlabmi4fqkc80zcmaldmhi"; depends=[Rcpp]; broken = true; }; robustarima = derive2 { name="robustarima"; version="0.2.6"; sha256="137x9w3fq523bw2wix7bwc255mq7kvqa047chcnb2prihn9d6as7"; depends=[splusTimeDate splusTimeSeries]; broken = true; }; robustgam = derive2 { name="robustgam"; version="0.1.7"; sha256="0s1z7jylj757g91najbyi1aiqnssd207jfm9yhias746540qp3kw"; depends=[mgcv Rcpp RcppArmadillo robustbase]; broken = true; }; roistats = derive2 { name="roistats"; version="0.1.1"; sha256="1278cap5il85s1qls3sc0f4gqq2hi80442qidnsc6d8r3l4ba3fr"; depends=[dplyr magrittr purrr rlang tidyr]; broken = true; }; @@ -23162,17 +23602,21 @@ in with self; { rsbp = derive2 { name="rsbp"; version="0.1.0"; sha256="0aardngvj9apn8q5vhfpv67rf7d5iqb7xdq7rh8xmgr8341fvbgc"; depends=[dplyr lubridate magrittr purrr reshape2 tibble tidyr xml2]; broken = true; }; rscala = derive2 { name="rscala"; version="3.2.25"; sha256="0nybhx8pblnniinvg74kbgg5bvw7y80ql8frij0178yglpbgrka9"; depends=[]; broken = true; }; rscimark = derive2 { name="rscimark"; version="1.0"; sha256="1jsjz4d5bnxb90qqzz42m4nyvm8d8w8bs0m1r5g2n78zmckqb8vy"; depends=[checkmate]; broken = true; }; + rsleep = derive2 { name="rsleep"; version="1.0.12"; sha256="1sqczgfkpa7bg8hbmy0baxlb9n6r76g4n5nh19v50wrdh87h3771"; depends=[abind dplyr edfReader ggplot2 jsonlite psd readr signal xml2 xts]; broken = true; }; rsnps = derive2 { name="rsnps"; version="0.6.0"; sha256="1qslwgqcr4xf5vnrqx02nj84iyq8fhxfsj7yyyl6727v5xvgc12p"; depends=[crul data_table httr jsonlite plyr stringr]; broken = true; }; rsofun = derive2 { name="rsofun"; version="4.4"; sha256="1vq5hrjqq3ppki5rxd2gl3219p3cxg5ajgr14ynxkyg9sdbmnsb0"; depends=[BayesianTools dplyr GenSA magrittr multidplyr purrr tidyr]; broken = true; }; rsqliteadmin = derive2 { name="rsqliteadmin"; version="1.0.1"; sha256="1d9szm3nsr1q3hqrmapxdlymmgb3655n8v6x2vpcpahg54ajqrp5"; depends=[config data_table disk_frame DT fs golem magrittr RSQLite shiny shinyAce shinydashboard shinyFiles shinyjqui]; broken = true; }; rstoat = derive2 { name="rstoat"; version="1.0.2"; sha256="0npwv33a7axwhnfyz39nh0x5kk4q3chscings3msx532lzvif0cl"; depends=[curl httr jsonlite keyring]; broken = true; }; rsurfer = derive2 { name="rsurfer"; version="0.2"; sha256="14zd8fhak12yha6miwb84085722v5ipk8lagijhc6af291kp70i9"; depends=[gdata stringr]; broken = true; }; rtext = derive2 { name="rtext"; version="0.1.22"; sha256="0wsy0iqzbfin92pw0bqj4bxm2p4f2y4frr137l6c3yvd0jrax3q4"; depends=[digest hellno magrittr R6 Rcpp RSQLite stringb]; broken = true; }; + rtrim = derive2 { name="rtrim"; version="2.1.1"; sha256="1l2ijkm4p3nd7n4q1b4y9pdyafgyf76zizpi7hhzw1rr9zkxhff2"; depends=[]; broken = true; }; rtsVis = derive2 { name="rtsVis"; version="0.0.3"; sha256="0j48p4cdkd3dwc5bxv8kmmqj38yaq4rz0wp47kx21msbajcw5m3m"; depends=[assertthat dplyr forcats ggplot2 magrittr moveVis pbapply raster RStoolbox sf sp tidyr]; broken = true; }; ruta = derive2 { name="ruta"; version="1.2.0"; sha256="0nycvy38aci3flrnqns3ppyxph9f57gdpxkpj7jfv871lzd3bkqw"; depends=[keras purrr R_utils tensorflow]; broken = true; }; + rv = derive2 { name="rv"; version="2.3.5"; sha256="1rjbhlvd7cxn7yw001p859zl5ibxl4di03j1aadm4zycq1zyr6q7"; depends=[]; broken = true; }; rvTDT = derive2 { name="rvTDT"; version="1.0"; sha256="09c2fbqnlwkhaxfmgpsdprl0bb447ajk9xl7qdlda201fvxkdc8v"; depends=[CompQuadForm]; broken = true; }; rwt = derive2 { name="rwt"; version="1.0.2"; sha256="17ydpjnhg0glgpvbcwnrmyk49qqvflss1njk044j4f0zk7h0i6wi"; depends=[matlab]; broken = true; }; ryouready = derive2 { name="ryouready"; version="0.4"; sha256="1d9z3paxcrkwsgn5g83x57jwz2iqarks30x0bwg48i5ispw6xbr3"; depends=[car ggplot2 stringr]; broken = true; }; + s2dverification = derive2 { name="s2dverification"; version="2.10.3"; sha256="10zqw7w8hm7cqbaxy6asflw0i8s5rmki2xhv3d51sm67vb7qn6f4"; depends=[abind bigmemory GEOmap geomapdata mapproj maps NbClust ncdf4 plyr SpecsVerification]; broken = true; }; sBF = derive2 { name="sBF"; version="1.1.1"; sha256="0dankakl4rwl9apl46hk57ps4mvn2l1crw4gdqds26fc8w6f6rab"; depends=[]; broken = true; }; sabarsi = derive2 { name="sabarsi"; version="0.1.0"; sha256="14c94zby3jjm6jr28nrg3qp6r6iw68wsb5l5bpd6jjz9pkljrk9i"; depends=[]; broken = true; }; saccades = derive2 { name="saccades"; version="0.1-1"; sha256="138a6g3hjmcyvflpxx1lhgxnb8svrynplrjnvzij7c4bzkp8zip6"; depends=[zoom]; broken = true; }; @@ -23183,6 +23627,7 @@ in with self; { saeHB_zinb = derive2 { name="saeHB.zinb"; version="0.1.1"; sha256="0z8yngvd3rizxkfb8j6jn9gfm7q8888igdq354r9dibprkw4fxbs"; depends=[coda rjags stringr]; broken = true; }; saery = derive2 { name="saery"; version="1.0"; sha256="09x1v627llqbpiwkh1wr0z7gsndfdrjzag2hprhq1adbzh05k47z"; depends=[]; broken = true; }; safeBinaryRegression = derive2 { name="safeBinaryRegression"; version="0.1-3"; sha256="1g68r6pp5l41rbgyfqgcha1gpsisnl0ybdmdqr4ylr43f61dpgvd"; depends=[lpSolveAPI]; broken = true; }; + safedata = derive2 { name="safedata"; version="1.1.3"; sha256="127ciirz3sjq2qfnx5zrh2nwglign55if9gwplvr579m0jjysjf5"; depends=[chron curl httr igraph jsonlite readxl sf]; broken = true; }; sail = derive2 { name="sail"; version="0.1.0"; sha256="1wrh2dam5lblascqd8gl76jks72ys1amz84c6p08y8ykdmn2saq1"; depends=[gglasso glmnet]; broken = true; }; salbm = derive2 { name="salbm"; version="1.0"; sha256="06nizpphyn5q292b2kbsjax0ljw3340n655qwiyp8lvi2zcnl6jy"; depends=[randomForestSRC]; broken = true; }; salem = derive2 { name="salem"; version="0.2.0"; sha256="1pk27d57bmds0jvnvwai2scjy798lb7w6lb84yxl4ccgyn1ldh45"; depends=[]; broken = true; }; @@ -23194,13 +23639,15 @@ in with self; { satscanMapper = derive2 { name="satscanMapper"; version="1.0.2"; sha256="12vx1gr2z942wrjn6ks4lq9rb9ycnfg2rnl18scglqjqzlbsn9al"; depends=[foreign RColorBrewer SeerMapper sp stringr]; broken = true; }; saves = derive2 { name="saves"; version="0.5"; sha256="1b4mfi2851bwcp0frx079h5yl6y1bhc2s8ziigmr8kwy1y1cxw10"; depends=[]; broken = true; }; sbioPN = derive2 { name="sbioPN"; version="1.1.0"; sha256="0yvg55xnkhm35hfl7rldy2grb26hm4a68jr4x9n45fs7hhdylxri"; depends=[]; broken = true; }; - scCAN = derive2 { name="scCAN"; version="1.0.4"; sha256="1w509y629xpqd748k7rghv8plav0jyyigfcf3n2c1m2a6qhh338x"; depends=[FNN purrr scDHA]; broken = true; }; scImmuneGraph = derive2 { name="scImmuneGraph"; version="1.1.3"; sha256="0mvajasskcl4v0bjwzvkqjdicxb0329nxk93ich7qr37wfcp2n1n"; depends=[BiocStyle cowplot dplyr easypackages forcats ggplot2 gtools plyr purrr RColorBrewer readr scales stringr tibble tidyr tidyverse]; broken = true; }; scPOP = derive2 { name="scPOP"; version="0.1.0"; sha256="0bi9dmqj9cd8f09qmfl3d65922xn3j3jipxi6615jbk6bz67kkh9"; depends=[cluster Matrix RANN Rcpp RcppArmadillo]; broken = true; }; scTEP = derive2 { name="scTEP"; version="0.1.0"; sha256="1qdmsdn56sl5na0smhis9p3jwdwfs88p1x409fbpskxwpzz5cd52"; depends=[BiocGenerics doParallel dplyr foreach ggsci igraph Matrix psych rlang scDHA SingleCellExperiment SummarizedExperiment tibble]; broken = true; }; scatteR = derive2 { name="scatteR"; version="0.0.1"; sha256="0w6sf8zkp0jjgrx2nbp43crx3w3dbrld3pk6hzjrqhf2l9wrqygw"; depends=[GenSA rJava scagnostics]; broken = true; }; scenario = derive2 { name="scenario"; version="1.0"; sha256="0v1b00kiny21yx4qkk2x51cy1zqibdnd68z76qia7h5py28yhxsi"; depends=[]; broken = true; }; + scfetch = derive2 { name="scfetch"; version="0.5.0"; sha256="0qyixanc72vang1zsr6v9yfv2j911iniiylw3fcxvykvfxp9zhmv"; depends=[Biobase curl data_table dplyr GEOquery httr jsonlite LoomExperiment magrittr Matrix openxlsx pbapply purrr reticulate rlang rPanglaoDB scater Seurat SingleCellExperiment SummarizedExperiment tibble tidyr]; broken = true; }; scopr = derive2 { name="scopr"; version="0.3.4"; sha256="1zskhhbdgijkbh4jrvlfd46q4s8fyycqcgcx3lzyvi5xvv6h0sxg"; depends=[behavr curl data_table memoise readr RSQLite stringr]; broken = true; }; + scorematchingad = derive2 { name="scorematchingad"; version="0.0.60"; sha256="1jaqhqahg2pszmw9d9pgywpdlzdnwridj54y3mc3kkxwv7npd59r"; depends=[ellipsis FixedPoint MCMCpack optimx R6 Rcpp RcppEigen Rdpack rlang]; broken = true; }; + scoringTools = derive2 { name="scoringTools"; version="0.1.3"; sha256="00bai8pm1wmal2dsqsyq9nrpkmrxc8bwccqp3gvf18b5s4s46k2r"; depends=[discretization dplyr magrittr sqldf]; broken = true; }; scpm = derive2 { name="scpm"; version="2.0.0"; sha256="1ib46m3i50annp90n2ih4qdxabxik4ngg9j0a5hgspsvk1i4hrvp"; depends=[interp lattice MASS Matrix mvtnorm RandomFields rgl]; broken = true; }; scriptests = derive2 { name="scriptests"; version="1.0-16"; sha256="11l145gvzkxqwbzw976rq94krly1p4lahqw051dwaacarq4hnrdg"; depends=[]; broken = true; }; sdStaf = derive2 { name="sdStaf"; version="1.0.2"; sha256="0r7lqj30r3f0b18kpahi63zsdizcw2zjf1vvvs04s4cg1djjbcp3"; depends=[dismo dplyr ggplot2 raster rasterVis rgdal rgeos sp tidyr]; broken = true; }; @@ -23211,6 +23658,8 @@ in with self; { sdtoolkit = derive2 { name="sdtoolkit"; version="2.33-1"; sha256="0pirgzcn8b87hjb35bmg082qp14idc5pfvm6dikpgkswag23hwh8"; depends=[]; broken = true; }; seAMLess = derive2 { name="seAMLess"; version="0.1.0"; sha256="18rpka0qq6hh7v241bv5k8ln03qk90lpf3ak2plq861lnf3p0wxb"; depends=[Biobase ggplot2 ggtern randomForest]; broken = true; }; seagull = derive2 { name="seagull"; version="1.1.0"; sha256="1kmidbxzs8zrjji6wsn8nrdv5mpfmmf6q30h1w4rc0swx1ycsgx4"; depends=[matrixStats Rcpp RcppArmadillo]; broken = true; }; + searchConsoleR = derive2 { name="searchConsoleR"; version="0.4.0"; sha256="1ffg5359pbwylw265wbahwl3hy1b0qqv4al71v5r8lgfircibn0j"; depends=[googleAuthR stringr]; broken = true; }; + seasonalclumped = derive2 { name="seasonalclumped"; version="0.3.2"; sha256="0a9ryds9l00dw6pr9s6r6fzrby53zz63idjywh127a4ga48jwnq3"; depends=[ggplot2 gridExtra magrittr TTR]; broken = true; }; seedwater = derive2 { name="seedwater"; version="2.0"; sha256="1q6q612245hqqx89jzlp77f73vj2baxi0bghd9l8kpjz4ydh6rv8"; depends=[rpanel]; broken = true; }; seg = derive2 { name="seg"; version="0.5-7"; sha256="165hl55vzyf3jqlykqji37p2syzhc8dxdjxd4wwr562qnlymzszx"; depends=[sp splancs]; broken = true; }; selfea = derive2 { name="selfea"; version="1.0.1"; sha256="0zyxbd5vg8nhigill3ndcvavzbb9sbh5bz6yrdsvzy8i5gzpspvx"; depends=[ggplot2 MASS plyr pwr]; broken = true; }; @@ -23222,6 +23671,7 @@ in with self; { sensitivityPStrat = derive2 { name="sensitivityPStrat"; version="1.0-6"; sha256="0rfzvkpz7dll3173gll6np65dyb40zms63fkvaiwn0lk4aryinlh"; depends=[survival]; broken = true; }; seplyr = derive2 { name="seplyr"; version="1.0.4"; sha256="09lv2jic2dhwl2pra56kf7087inbjg9b5461dyy2a31h5ji68j08"; depends=[dplyr rlang tidyr wrapr]; broken = true; }; seq2R = derive2 { name="seq2R"; version="2.0.0"; sha256="1ynhmfch8w2s0mh55km6v9afn0z3p43ckg79cz08d2z25lv5syrj"; depends=[seqinr]; broken = true; }; + seqCBS = derive2 { name="seqCBS"; version="1.2.1"; sha256="176ggpdcgmpsjixmz0ldknyd0vw120kjyrid3bq2bn4cgkwzb74z"; depends=[clue]; broken = true; }; seqR = derive2 { name="seqR"; version="1.0.1"; sha256="0a80w7pyf2hbyzlm010xj3xv1dzkdc2w9s48hhfbsig88f497ki7"; depends=[Matrix Rcpp RcppParallel rlang slam]; broken = true; }; seqRFLP = derive2 { name="seqRFLP"; version="1.0.1"; sha256="1i98hm8wgwr8b6hd237y2i9i0xgn35w4n2rxy4lqc5zq71gkwkvk"; depends=[]; broken = true; }; sequence = derive2 { name="sequence"; version="2.0"; sha256="0r5h96gcp18lwgrl2pjlr71xqspkf6qmm1m0xjq5vadalfa7y294"; depends=[]; broken = true; }; @@ -23230,6 +23680,7 @@ in with self; { seroincidence = derive2 { name="seroincidence"; version="2.0.0"; sha256="0sam4y7w6prswz0izkm1a9v2k5rv7z22g1ajy15n9xix9aml5ms4"; depends=[]; broken = true; }; session = derive2 { name="session"; version="1.0.3"; sha256="04mcy1ac75fd33bg70c47nxqxrmqh665m9r8b1zsz5jij1sbl8q5"; depends=[]; broken = true; }; set6 = derive2 { name="set6"; version="0.2.4"; sha256="06swz60p73a7m7rvsv1545hsr2chkk2w2hmnfwkwfz4hrbdxm709"; depends=[checkmate ooplah R6 Rcpp]; broken = true; }; + setter = derive2 { name="setter"; version="0.0-1"; sha256="10fwrx8yysp99rrkbnn3rbz79vyzr2h3p7zxxlqapw1k2lllp0r5"; depends=[assertive_base]; broken = true; }; severity = derive2 { name="severity"; version="2.0"; sha256="1mp19y2pn7nl9m8xfljc515kk5dirv0r2kypazpmd956lcivziqq"; depends=[]; broken = true; }; sfa = derive2 { name="sfa"; version="1.0-1"; sha256="1acqxgydf8j5csdkx0yf169x3yaa31r0ccdrqarh6vj1hacm89ad"; depends=[]; broken = true; }; sglOptim = derive2 { name="sglOptim"; version="1.3.8"; sha256="15bkkvgp9v9vsp65wps48g3c2fa0fj1025hbrziywq14j7wayyjr"; depends=[BH doParallel foreach Matrix Rcpp RcppArmadillo RcppProgress]; broken = true; }; @@ -23237,6 +23688,7 @@ in with self; { shadow = derive2 { name="shadow"; version="0.7.1"; sha256="055064jwxf9fkvw95w8if5aqcxrgg3b224qs1c81v8m8adr46v0r"; depends=[raster rgeos sp]; broken = true; }; shallot = derive2 { name="shallot"; version="0.4.10"; sha256="05ciafpahcrsh9kwg1yqwbmanvkbv1i1cjjpvq3w4cdqkhn4fam7"; depends=[commonsMath rscala]; broken = true; }; shinybootstrap2 = derive2 { name="shinybootstrap2"; version="0.2.1"; sha256="17634l3swlvgj1sv56nvrpgd6rqv7y7qjq0gygljbrgpwmfj198c"; depends=[htmltools jsonlite shiny]; broken = true; }; + shinyr = derive2 { name="shinyr"; version="0.3.0"; sha256="1r4xpb5x0711jbh4v8wkfhgg3s7l1sxqr6i90wsh0k0q3501fs2i"; depends=[caret corrplot dplyr e1071 knitr nnet plotly randomForest RColorBrewer shiny shinydashboard tm wordcloud]; broken = true; }; shinyrecap = derive2 { name="shinyrecap"; version="0.1.0"; sha256="1mic7azxz2in67g3a2ir550w8psh6kc75p6hja6m62a0yy7j2n92"; depends=[CARE1 coda conting dga future ggplot2 ipc LCMCR promises Rcapture reshape shiny shinycssloaders testthat]; broken = true; }; shinyypr = derive2 { name="shinyypr"; version="0.0.2"; sha256="1k6jsw6gnpwk90hkpa9grki0b68cab57vbd0h6ldjqr11giwcz8z"; depends=[bsplus chk dplyr DT ggplot2 lifecycle magrittr purrr readr shiny shinyjs waiter ypr]; broken = true; }; shutterstock = derive2 { name="shutterstock"; version="0.1.0"; sha256="1vqbrjbwl2gdcf607f51cdzkjbkmk11n08mzx01j7bwcd278ny8r"; depends=[httr jsonlite]; broken = true; }; @@ -23272,13 +23724,15 @@ in with self; { somebm = derive2 { name="somebm"; version="0.1"; sha256="1iwwc94k6znh4d3bbjnvwp4chc4wg0iy4v2f99cs4jasrsimb4p8"; depends=[]; broken = true; }; somplot = derive2 { name="somplot"; version="1.6.4"; sha256="06c8p2lqz3yxmxdl7ji8a3czvxnsbl7bwyiig76pkwc3a5qqfbb9"; depends=[hexbin]; broken = true; }; soobench = derive2 { name="soobench"; version="1.9.18"; sha256="06wzlxdw0l6jc1zqsgkn120ibprfalwqd38xh7dpi30vdqiqskcc"; depends=[]; broken = true; }; + soundcorrs = derive2 { name="soundcorrs"; version="0.4.0"; sha256="1azvsv3bghlab8q24wbb6xwd5a4cydx1cagvhk8h0h5ib9957zab"; depends=[]; broken = true; }; sourceR = derive2 { name="sourceR"; version="1.1.0"; sha256="09mikl6rkigx2bdnwqsgxwksz40lspq27hsrhlnfyz5yhs31ssda"; depends=[assertthat cluster dplyr gplots gtools R6 Rcpp reshape2 SPIn tensorA]; broken = true; }; + spNetwork = derive2 { name="spNetwork"; version="0.4.4"; sha256="049fc00rnslairlryzlvgir05ha4pbsdbn0shrbvfh9yhwk2llpk"; depends=[abind BH cubature data_table dbscan future_apply ggplot2 igraph progressr Rcpp RcppArmadillo RcppProgress Rdpack sf sfheaders spdep]; broken = true; }; space = derive2 { name="space"; version="0.1-1.1"; sha256="09dpksbda4lg5hax47a9h9shjmggza6583slvdj0fldblykpyxck"; depends=[]; broken = true; }; spacey = derive2 { name="spacey"; version="0.1.1"; sha256="1p8kx3d08q9kz1wb286m3d8ckwkhfm5n42m65m4w5gz5kpfx0xfz"; depends=[httr jsonlite magrittr png raster rayshader rgdal]; broken = true; }; - spagmix = derive2 { name="spagmix"; version="0.3-5"; sha256="0rjdsg1pl8vpbcyyiqaqgc10h3i0q8xqivpawfaw43ybz15csnzl"; depends=[abind mvtnorm RandomFields sparr spatstat spatstat_core spatstat_geom spatstat_linnet spatstat_random]; broken = true; }; spamtree = derive2 { name="spamtree"; version="0.2.2"; sha256="1z1dyv6cvcdilqyfpzgl3zr0jmzjn2sznrvypvxx7c8i6qfq8nd0"; depends=[dplyr FNN magrittr Rcpp RcppArmadillo rlang tibble]; broken = true; }; spanel = derive2 { name="spanel"; version="0.1"; sha256="1riyvvfij277mclgik41gyi01qv0k466wyk2wbqqhlvrlj79yzsc"; depends=[]; broken = true; }; sparsebn = derive2 { name="sparsebn"; version="0.1.2"; sha256="1b1601n3nmxck6a27xqxpsa79p4xnz7yyzdfqiddn9zd2b4v9wc5"; depends=[ccdrAlgorithm discretecdAlgorithm sparsebnUtils]; broken = true; }; + sparsebnUtils = derive2 { name="sparsebnUtils"; version="0.0.8"; sha256="1x1phd33r3ci72sbm0pkmigwbi4x59pdz8n5919119mkxdf740vs"; depends=[Matrix nnet]; broken = true; }; spatialfusion = derive2 { name="spatialfusion"; version="0.6-6"; sha256="14qccp9ca7b7v9w4fj04a99mx6qchfs8588fl16qfdmfbazwnfra"; depends=[deldir fields Rcpp rgeos rstan sp spam]; broken = true; }; spatialnbda = derive2 { name="spatialnbda"; version="1.0"; sha256="14mx5jybymasyia752f3vnr5vmswcavbz8bpqr69vlxphw27qkwk"; depends=[mvtnorm SocialNetworks]; broken = true; }; spatstat_core = derive2 { name="spatstat.core"; version="2.4-4"; sha256="0fyi8y1z919nzn47kaviln7gflhcp5qdi3gfvf7nwkdix3pkk373"; depends=[abind goftest Matrix mgcv nlme rpart spatstat_data spatstat_geom spatstat_random spatstat_sparse spatstat_utils tensor]; broken = true; }; @@ -23287,12 +23741,15 @@ in with self; { speccalt = derive2 { name="speccalt"; version="0.1.1"; sha256="0j7rbidmmx78vgwsqvqjbjjh92fnkf2sdx0q79xlpjl2dph7d6l6"; depends=[]; broken = true; }; specmine = derive2 { name="specmine"; version="3.1.6"; sha256="0ik3nsb9mrja6709fwsf97f9qbf7lmmyc2zqrm7398h3mibf64l7"; depends=[baseline caret compare e1071 ellipse genefilter GGally ggplot2 impute imputeTS MASS Metrics mrbin narray pcaPP plotly pls RColorBrewer readJDX speaq specmine_datasets]; broken = true; }; specmine_datasets = derive2 { name="specmine.datasets"; version="0.0.2"; sha256="0amqb4qy5ac1jc4g95sf4678ll3xhscyrcxq6pgh8imfyk1ifrmx"; depends=[xcms]; broken = true; }; + spectrolab = derive2 { name="spectrolab"; version="0.0.18"; sha256="1iwhsz19yfvf71zg1ifg9d3xb9rjbng1h5g7vfakm1jckin9mrv2"; depends=[RColorBrewer shiny shinyjs]; broken = true; }; + spflow = derive2 { name="spflow"; version="0.1.0"; sha256="0a5nirccwcc2z4dn3gxdlhdjz7sxv1r23clawy0kwn4ggdkmphp1"; depends=[coda Matrix Rdpack RSpectra]; broken = true; }; spfrontier = derive2 { name="spfrontier"; version="0.2.5"; sha256="1vnvwcjbhvbmyn5rp4760amzy8k3y156q629fjymw9rw6zy45pbf"; depends=[ezsim moments mvtnorm numDeriv optimx spdep tmvtnorm]; broken = true; }; spftir = derive2 { name="spftir"; version="0.1.0"; sha256="07vw8igy698jx671cj6hmf6ll9xvaq81fb6la7j95pqbd6jl284z"; depends=[pracma]; broken = true; }; spgrass6 = derive2 { name="spgrass6"; version="0.8-9"; sha256="05xvdhisad0d7c69mvahzg6pvgvmb6dph50r34981palykic7qhn"; depends=[sp XML]; broken = true; }; spiR = derive2 { name="spiR"; version="0.2.1"; sha256="0v3304d0ar6344377m6zd4p6f9m8ibq37i5ys4lnxnw41lhjx1x2"; depends=[dplyr ggplot2 ggsci gsheet lubridate readr reshape2]; broken = true; }; spiders = derive2 { name="spiders"; version="1.2"; sha256="1qklm178bgkgpvrjf024jphsdh9can8300sf0702l4h0rk2daqbq"; depends=[plyr]; broken = true; }; splashr = derive2 { name="splashr"; version="0.6.0"; sha256="0l57w5gwr0p2049z1201nlqsy23h37gsybd1lj3vycxz43ir7213"; depends=[curl dplyr formatR HARtools httr jsonlite lubridate magick openssl purrr scales stevedore stringi xml2]; broken = true; }; + splitFeas = derive2 { name="splitFeas"; version="0.1.0"; sha256="1cfiis32h5kkp8r1mndmj4xss9gw96vdzk7q68q3jhbwqiaxp9rp"; depends=[corpcor matrixStats]; broken = true; }; splusTimeDate = derive2 { name="splusTimeDate"; version="2.5.4"; sha256="131g7vd6kqr4vx58myciwlvkvpbblvzhj4qw0l57a45mwa90sqy3"; depends=[]; broken = true; }; splusTimeSeries = derive2 { name="splusTimeSeries"; version="1.5.5"; sha256="0j62vb601036zj1zj68qhgmg0bbrbrpz8bak0g6n5qf25yr9y09x"; depends=[splusTimeDate]; broken = true; }; spm12r = derive2 { name="spm12r"; version="2.8.3"; sha256="04bv4x7p2vv9n8zi5axpkcj13h6q08lc6qyd1czvxrpdmzsp40yb"; depends=[git2r matlabr neurobase oro_nifti R_utils]; broken = true; }; @@ -23301,11 +23758,13 @@ in with self; { spotGUI = derive2 { name="spotGUI"; version="0.2.3"; sha256="0hybpw0lgqrzrryfp08qvl42hrgdmx2hq7bavxjihm8mp0375dmz"; depends=[batchtools gridExtra httpuv plotly rclipboard rhandsontable shiny shinyBS shinydashboard shinyFiles shinyjs smoof SPOT XML]; broken = true; }; spots = derive2 { name="spots"; version="0.1.0"; sha256="0q5jfb99hrlz5c1jnn4a96pg07bccbw0khfq8mvaq4r3vdykzmqy"; depends=[Matrix RSpectra]; broken = true; }; spp = derive2 { name="spp"; version="1.16.0"; sha256="08zxxgyp0h6733b08jmml7k4rhfd3mi5dda3jrzid0s184y0z29w"; depends=[BH caTools Rcpp Rsamtools]; broken = true; }; + spqdep = derive2 { name="spqdep"; version="0.1.3.2"; sha256="03lzp368ylkf1hrnl00kndlkmp9lwma0j9w9b3hn5glzdljhalxl"; depends=[broom dplyr ggplot2 gridExtra gt gtools igraph lwgeom magrittr Matrix purrr rgeoda rsample sf sp spatialreg spdep tidyr]; broken = true; }; sprm = derive2 { name="sprm"; version="1.2.2"; sha256="0iyijkjnyz4yx2cmazlnhkk0f5ls0c2q2aikwlzl13w6zbj040a8"; depends=[cvTools ggplot2 pcaPP reshape2 robustbase]; broken = true; }; sprsmdl = derive2 { name="sprsmdl"; version="0.1-0"; sha256="09klwsjp5w6p7dkn5ddmqp7m9a3zcmpr9vhcf00ynwyp1w7d26gi"; depends=[]; broken = true; }; spruce = derive2 { name="spruce"; version="0.99.1"; sha256="1kklv4d2ycjcxv183cpqa6qn46zn8nww1z8xn4sy7ipz394i10cf"; depends=[BayesLogit dplyr ggplot2 igraph MCMCpack mvtnorm patchwork Rcpp RcppArmadillo rlang Seurat tidyr tidyselect truncnorm]; broken = true; }; spsann = derive2 { name="spsann"; version="2.2.0"; sha256="00nlrwk50ch128brzvfxld0pcpq1syks9rvwdrcf1i2pcxnva7d0"; depends=[pedometrics Rcpp sp SpatialTools]; broken = true; }; spsi = derive2 { name="spsi"; version="0.1"; sha256="0q995hdp7knic6nca0kf5yzkvv8rsskisbzpkh9pijxjmp1wnjrx"; depends=[plot3D]; broken = true; }; + sptm = derive2 { name="sptm"; version="2019.11-25"; sha256="1hdymzngdppmh56dqh0k88n9hg68pbx9rgmimbz4ihnfx2plvadh"; depends=[kyotil survey survival]; broken = true; }; sqlutils = derive2 { name="sqlutils"; version="1.2"; sha256="0dq4idg8i4hv9xg8jllllizqf3s75pdfm1wgncdjj52xhxh169pf"; depends=[DBI roxygen2 stringr]; broken = true; }; sqp = derive2 { name="sqp"; version="0.5"; sha256="0l01zwcryv5bmzmd98gj0m5ip8nvr8lziq1awvfif1bzwvvd2kzx"; depends=[Matrix Rcpp RcppArmadillo RcppEigen Rdpack]; broken = true; }; squashinformr = derive2 { name="squashinformr"; version="0.2.6"; sha256="0qsgvcmw4yxsj3y2li3k33mycr2k3n8v9b09rcvs0qk036fmivgx"; depends=[dplyr Hmisc janitor lubridate naniar plyr polite rlang rvest stringr tibble tidyr]; broken = true; }; @@ -23324,16 +23783,21 @@ in with self; { static = derive2 { name="static"; version="0.1.0"; sha256="1n9ijilh81w2fz4cyd4abjj7qam8q7rirmp8lni5cxsb4il0qbfa"; depends=[]; broken = true; }; stickr = derive2 { name="stickr"; version="0.3.1"; sha256="0krz123vz4bdcdi4p27r637pgz4rcj6kmyiqdf5x69riddvfxx8r"; depends=[base64enc fs gh stringr]; broken = true; }; stlcsb = derive2 { name="stlcsb"; version="0.1.2"; sha256="08pnj1yb4xcbhnrp2wny8lq9rvcvmsgaza07k4358csfksvmcira"; depends=[dplyr lubridate purrr readr readxl rlang rvest sf stringr tibble xml2]; broken = true; }; + stminsights = derive2 { name="stminsights"; version="0.4.2"; sha256="1a0wglrsl5sr7fc6vhiwva0lmr0ac3ns4rfis2y8ib2vxxwhwb8j"; depends=[dplyr ggplot2 ggraph ggrepel huge igraph purrr readr scales shiny shinyBS shinydashboard shinyjs stm stringr tibble tidygraph]; broken = true; }; + stochprofML = derive2 { name="stochprofML"; version="2.0.3"; sha256="0j6m2byh7w9kcbp3mfvmg6fm6z0dq8k4qabj1yfkl0d1y2ifd1zd"; depends=[MASS numDeriv]; broken = true; }; stockfish = derive2 { name="stockfish"; version="1.0.0"; sha256="1il3na3d96k34vj62pvxrs2ah3a9ly8ww3gi3nr0459piw4wd611"; depends=[processx R6]; broken = true; }; + stringb = derive2 { name="stringb"; version="0.1.17"; sha256="0bfwwbg64nzxrx30cndqvdlhanjkx6875lg5dzm9cbwvwg2wbxcn"; depends=[backports]; broken = true; }; strm = derive2 { name="strm"; version="0.1.3"; sha256="1jwsdr2pja7gjrrdn37bv9r8xvyzl03akrgldh4qbrvx9p03w67w"; depends=[dplyr knitr magrittr purrr rgdal rlang rmarkdown spatialreg testthat tidyr]; broken = true; }; stsm = derive2 { name="stsm"; version="1.9"; sha256="18ypmkd7l7m7qkahb0nqf8f1m8g4irxlw48v2ms0dq1bsnhbzx7j"; depends=[KFKSDS]; broken = true; }; stubthat = derive2 { name="stubthat"; version="1.2.1"; sha256="130naxzvswcyadwcgldvwnxxdxbfwx5vljac7901vn3ahjp75d8z"; depends=[testthat]; broken = true; }; stylest = derive2 { name="stylest"; version="0.2.0"; sha256="1c036zsn1gi5vhsz37p56wz1bcr3pwdp2k62j7ikmrrnkcv2w9kz"; depends=[corpus Matrix]; broken = true; }; sublime = derive2 { name="sublime"; version="1.3"; sha256="0455fppc68azxknxjvxci4kjpcj6c1jkp9adbxqrn3qnnywaj5v2"; depends=[AnalyzeFMRI downloader oro_nifti]; broken = true; }; subniche = derive2 { name="subniche"; version="1.5"; sha256="1w5xsfqq1y9gy8wrxmfxk02jhzmyg2cdky7vm7qdcg9l63dhracj"; depends=[ade4 polyclip SIBER wordcloud]; broken = true; }; + subsamp = derive2 { name="subsamp"; version="0.1.0"; sha256="1bfz2z2qy1war3id8qr1asygwvwxgf2hhlh075hr6bjdkxz0j0nd"; depends=[]; broken = true; }; subtee = derive2 { name="subtee"; version="1.0.1"; sha256="090k3p1j9fj7qk121qb488vzfgzxnvqp7z60jhcyy8l47aazf5g0"; depends=[ggplot2 httr MASS matrixStats survival]; broken = true; }; subtype = derive2 { name="subtype"; version="1.0"; sha256="1094q46j0njkkqv09slliclp3jf8hkg4147hmisggy433xwd19xh"; depends=[penalized ROCR]; broken = true; }; sundialr = derive2 { name="sundialr"; version="0.1.4.1"; sha256="1ln8zbihxfa7dnbhrm254l8qzdw16fhva58p5bd0p8j43grq6qrv"; depends=[Rcpp RcppArmadillo]; broken = true; }; + supcluster = derive2 { name="supcluster"; version="1.0.1"; sha256="131s9q4p2lzs09q5zc702pafnisk1aylq9i52wk27hvpcsh0v1pc"; depends=[gtools mvtnorm]; broken = true; }; superMDS = derive2 { name="superMDS"; version="1.0.2"; sha256="0jxbwm3izk7bc3bd01ygisn6ihnapg9k5lr6nbkr96d3blpikk04"; depends=[]; broken = true; }; support = derive2 { name="support"; version="0.1.5"; sha256="0gs6mva1lwanq4rm8l70sid28if2l0k249ydirqkz72lz12hg1br"; depends=[BH MHadaptive nloptr randtoolbox Rcpp RcppArmadillo]; broken = true; }; supportInt = derive2 { name="supportInt"; version="1.1"; sha256="14fh75sds05c06xkcfbijd8my3sa9kpnczzh96xx0gwj1193yya9"; depends=[ProfileLikelihood]; broken = true; }; @@ -23363,10 +23827,10 @@ in with self; { synRNASeqNet = derive2 { name="synRNASeqNet"; version="1.0"; sha256="05ncwbv8kvvhqqrxa8qq7s0jc6krs5a56ph04z50iwgd91rzyi7x"; depends=[GenKern igraph KernSmooth parmigene]; broken = true; }; synfd = derive2 { name="synfd"; version="0.1.3"; sha256="1h8vfrfw00449vjbj6z4y7m5p7rxzvqjcykyxw5sb473f63gr5px"; depends=[L1pack Rdpack]; broken = true; }; synoptReg = derive2 { name="synoptReg"; version="1.2.1"; sha256="1v282ag4275p5lm6yvzwkpndrf4cnrpn0rw3v6mh5hxnb2pbmjl5"; depends=[dplyr ggplot2 kohonen lubridate magrittr metR raster rnaturalearth rnaturalearthdata RNCEP sf stringr tibble tidyr]; broken = true; }; - systemicrisk = derive2 { name="systemicrisk"; version="0.4.2"; sha256="021ypw9fag5kmk2q041pj2jfzgfg640yda7wvh0yzdmg73p6fvsw"; depends=[lpSolve Rcpp]; broken = true; }; tRophicPosition = derive2 { name="tRophicPosition"; version="0.8.0"; sha256="0ap7j15qfywilyx8zsnq061mis69yja16hjnla5grlqc0mcrdd7d"; depends=[coda data_table ggplot2 gridExtra hdrcde MCMCglmm plyr RColorBrewer rjags]; broken = true; }; taRifx = derive2 { name="taRifx"; version="1.0.6.2"; sha256="05cvjsi65fvy9hg2v3fldzwn1yd2kfirl3ffg9yfajm903dk3l49"; depends=[plyr reshape2]; broken = true; }; table1xls = derive2 { name="table1xls"; version="0.4.0"; sha256="0ixbshbp9hkcg12hj32vgb5bp0pj4rbc3i6g1xdg2zhqp7zanics"; depends=[XLConnect]; broken = true; }; + tableExtra = derive2 { name="tableExtra"; version="1.0.1"; sha256="1rbcxd3rjhvcpayj6d7mh30vkbc7g4mv4qa7552xz3x1wny0n4mm"; depends=[gtable]; broken = true; }; tabulizer = derive2 { name="tabulizer"; version="0.2.2"; sha256="0zd5cfqwgirqchw1mvziscxvzl8pb1y6rbfywkn9i9pxfydkm5vi"; depends=[png rJava tabulizerjars]; broken = true; }; tabulizerjars = derive2 { name="tabulizerjars"; version="1.0.1"; sha256="005n2gyzzmq8h0mpj8xs6ri6llzwag7nqzpm4vnzp81vwy8kmf92"; depends=[rJava]; broken = true; }; tangles = derive2 { name="tangles"; version="0.8.1"; sha256="06a5hn5hkvgr6pcjz3n0vi1zwmv00wypi5f62agqh8mas80v44vh"; depends=[digest raster sp]; broken = true; }; @@ -23384,6 +23848,7 @@ in with self; { tfse = derive2 { name="tfse"; version="0.5.0"; sha256="05q75xsiy955xwgchagk7l7725y6mylp5lj5284xm7y2xh197zp3"; depends=[dapr magrittr]; broken = true; }; thectar = derive2 { name="thectar"; version="1.0.0"; sha256="1qh0qzg0ybb38kzm56xxlvhm201pdjm16aky5f1fdflcsszgy8mx"; depends=[proxy smacof]; broken = true; }; themetagenomics = derive2 { name="themetagenomics"; version="1.0.2"; sha256="14i81cd9cyzhi3j2d9ygwlairkimhx8ffvva3pg3xwwvpywb6mla"; depends=[ggplot2 lda lme4 Matrix plotly Rcpp rstan scales shiny stm]; broken = true; }; + thewitcher = derive2 { name="thewitcher"; version="1.0.1"; sha256="140f0insb5gqrfdaq5cnzj6bl0akbif57jnyy7ai3rb2rwy9n2nv"; depends=[dplyr ggplot2 gridExtra magrittr MASS readr tidyverse usethis]; broken = true; }; thickmatch = derive2 { name="thickmatch"; version="0.3.1"; sha256="0q7wpilbk8jm3q7m5hb114jpbv4ri1745v9sbdf222l6ymds6pia"; depends=[DiPs MASS plyr rcbalance]; broken = true; }; threeBrain = derive2 { name="threeBrain"; version="1.0.1"; sha256="0pg5azxjqvwjl6235f0vnic04rz8vvaski0ac17mjn5ny1l0qnc1"; depends=[digest dipsaus freesurferformats gifti htmlwidgets jsonlite oro_nifti R6 ravetools servr shiny stringr xml2]; broken = true; }; threeboost = derive2 { name="threeboost"; version="1.1"; sha256="033vwn42ys81w6z90w5ii41xfihjilk61vdnsgap269l9l0c8gmn"; depends=[Matrix]; broken = true; }; @@ -23393,8 +23858,10 @@ in with self; { tidygate = derive2 { name="tidygate"; version="0.4.9"; sha256="0zs2z4xf76d9hw7zwwpd3bisjvq672smbmxl0qgjb7xdzh66cqsf"; depends=[dplyr lifecycle magrittr purrr RColorBrewer rlang scales stringr tibble tidyr viridis]; broken = true; }; tidylab = derive2 { name="tidylab"; version="4.1.1"; sha256="052wgx4dfbr806b9r0cfblkwaf1qnrlf5ngm1c029ggss3br7ki4"; depends=[cli crayon decorators dplyr microservices purrr rstudioapi tibble usethat]; broken = true; }; tidyndr = derive2 { name="tidyndr"; version="0.2.1"; sha256="0scjqnyl78aqqc03adlv3v0i67k3pi2a6m0cg6cxypaxhzzb2xg0"; depends=[dplyr forcats janitor lubridate magrittr purrr rlang stringr tibble tidyr tidyselect vroom]; broken = true; }; + tidyqwi = derive2 { name="tidyqwi"; version="0.1.2"; sha256="16f0c2mdx6aiji6i7237kpc9awqdgrg6rhs408w6ag28dhxpgwlv"; depends=[dplyr furrr future httr jsonlite labelled magrittr purrr stringr tidyr xml2]; broken = true; }; tidytags = derive2 { name="tidytags"; version="1.1.1"; sha256="0x4gv6k9ccs9r6s73xsk25ixwgmz5818s6jpndg0yqczybw3y5dm"; depends=[dplyr googlesheets4 rlang rtweet stringr]; broken = true; }; tiger = derive2 { name="tiger"; version="0.2.3.1"; sha256="0xr56c46b956yiwkili6vp8rhk885pcmfyd3j0rr4h8sz085md6n"; depends=[e1071 hexbin klaR lattice qualV som]; broken = true; }; + timeSeq = derive2 { name="timeSeq"; version="1.0.4"; sha256="0m59g12dmnwpmwjmyb9x6z53x3gjmxcaxqva2dlbazsqkbzgaayp"; depends=[gss lattice mgcv pheatmap reshape]; broken = true; }; timeline = derive2 { name="timeline"; version="0.9"; sha256="0zkanz3ac6cgsfl80sydgwnjrj9rm7pcfph7wzl3xkh4k0inyjq3"; depends=[ggplot2]; broken = true; }; timelineR = derive2 { name="timelineR"; version="1.0.0"; sha256="01bb4201p18l1l5yp622ml9zd8spc978hvhw1s7j57qki5rw4kdf"; depends=[dplyr futile_logger ggplot2 gtable lubridate mtconnectR rlang stringr]; broken = true; }; timesboot = derive2 { name="timesboot"; version="1.0"; sha256="1ixmcigi1bf42np93md8d3w464papg9hp85v0c3hg3vl4nsm2bji"; depends=[boot]; broken = true; }; @@ -23422,15 +23889,16 @@ in with self; { translateR = derive2 { name="translateR"; version="1.0"; sha256="11kh9hjpsj5rfmzybnh345n1gzb0pdksrjp04nzlv948yc0mg5gm"; depends=[httr RCurl RJSONIO textcat]; broken = true; }; translation_ko = derive2 { name="translation.ko"; version="0.0.1.5.2"; sha256="1w5xibg4znhd39f3i0vsqckp6iia43nblqxnzgj0ny6s7zmdq1wd"; depends=[]; broken = true; }; treasuryTR = derive2 { name="treasuryTR"; version="0.1.6"; sha256="1m7pw2y9q03vn32y63la56l816b3yqkix1yd3j3nk6mwmdyqcyjq"; depends=[dplyr lubridate quantmod xts zoo]; broken = true; }; + treeclim = derive2 { name="treeclim"; version="2.0.6.0"; sha256="0zdn766vxgycisjyjw7nh7hs817kqhdihyla3fhpzykw9pxnw0b2"; depends=[abind boot ggplot2 lmodel2 lmtest np plyr Rcpp RcppArmadillo]; broken = true; }; treecm = derive2 { name="treecm"; version="1.2.2"; sha256="0vrawg4vvy270dn20gb2k99xi4q89l4mjz0mm7ikpz8wxqypzq2l"; depends=[plyr]; broken = true; }; treeducken = derive2 { name="treeducken"; version="1.1.0"; sha256="0i2r1l508yi0cq7fzdds0hz2k4bxm67nknybxvbyylmwnwv6a0a1"; depends=[ape apTreeshape Rcpp RcppArmadillo]; broken = true; }; treelet = derive2 { name="treelet"; version="1.1"; sha256="0k3qhxjg7ws6jfhcvvv9jmy26v2wzi4ghnxnwpjm8nh7b90lbysd"; depends=[]; broken = true; }; treeman = derive2 { name="treeman"; version="1.1.4"; sha256="1rlq8sklvpj6an8x9wvs3501y6dpl2vhl5zfmz0yvmif04msf49v"; depends=[ape bigmemory plyr RJSONIO stringr]; broken = true; }; + treemisc = derive2 { name="treemisc"; version="0.0.1"; sha256="0289grmgcvdszsb9lhgygm1dahlcn1m50lh110ny5yjh1b4627kn"; depends=[Matrix Rcpp rpart]; broken = true; }; treeperm = derive2 { name="treeperm"; version="1.6"; sha256="0mz7p9khrsq4dbkijymfvlwr01y4fvs0x6si4x5xid16s2zsnmm4"; depends=[]; broken = true; }; treeplyr = derive2 { name="treeplyr"; version="0.1.10"; sha256="0k5hblnpbs8h2812blc6crx1j9w9r7lzkz3fraxkn4gdfpfi5100"; depends=[ape dplyr geiger lazyeval phytools Rcpp]; broken = true; }; treetop = derive2 { name="treetop"; version="0.0.5"; sha256="11lyg0izlzzvds8vig8ryicg94ydapr0wgfk5rj2shxqk9mxzfiz"; depends=[geometry lidR pryr raster rasterVis RColorBrewer rgdal rgl sf shiny sp spatstat_explore spatstat_geom stars]; broken = true; }; tribe = derive2 { name="tribe"; version="0.1.8"; sha256="01z1b9k3j4xi5fp9pkpr991yr7x8vk8vysipy7iwdmdr7xg4w4p0"; depends=[dplyr lazyeval magrittr rlang rstudioapi]; broken = true; }; - tricolore = derive2 { name="tricolore"; version="1.2.2"; sha256="0pxahddc3dah4n4xk4i0dkiwvh4wf03gcx8q3nfrsk07zzap1zh1"; depends=[assertthat ggplot2 ggtern shiny]; broken = true; }; trimTrees = derive2 { name="trimTrees"; version="1.2"; sha256="0v75xf5186dy76332x4w7vdwcz7zpqga8mxrb5all2miq2v45fi8"; depends=[mlbench randomForest]; broken = true; }; trioGxE = derive2 { name="trioGxE"; version="0.1-1"; sha256="1ra86l3i7fhb6nsy8izixyvm6z23shv7fcjmnnpil54995j15ax4"; depends=[gtools mgcv msm]; broken = true; }; tropicalSparse = derive2 { name="tropicalSparse"; version="0.1.0"; sha256="1ay6i3pzz5lpvznxqln31mijp86p6z0df7rvp0gm4lxvn294m7f8"; depends=[]; broken = true; }; @@ -23455,10 +23923,10 @@ in with self; { ucbthesis = derive2 { name="ucbthesis"; version="1.0"; sha256="0l855if3a7862lxlnkbx52qa617mby634sbb2gkprj21rwd7lcbp"; depends=[knitr stringr]; broken = true; }; uchardet = derive2 { name="uchardet"; version="1.1.1"; sha256="0m3xy807smqdxhkhd9cwrcf3ljlyvfmnkd7831qzpgcadam2jcdj"; depends=[]; broken = true; }; udapi = derive2 { name="udapi"; version="0.1.3"; sha256="0qyn6fdh8ia913hn2dl0x99xsm20ps8zm52snswlyb00prinm668"; depends=[curl httr]; broken = true; }; - ulid = derive2 { name="ulid"; version="0.3.0"; sha256="0xxkqrnlz3pkb3s1gacfzqav54w97gc0w8rh0fn1qy5rkmg2bplv"; depends=[Rcpp]; broken = true; }; unbalanced = derive2 { name="unbalanced"; version="2.0"; sha256="18hy9nnq42s1viij0a5i9wzrrfmmbf7y3yzjzymz2wnrx4f2pqwv"; depends=[doParallel FNN foreach mlr RANN]; broken = true; }; unfoldr = derive2 { name="unfoldr"; version="0.7.1"; sha256="1khas7d04g4y2kwldnsja5xk1n5mys2s66pln3l0gqlsbk67na12"; depends=[]; broken = true; }; uniftest = derive2 { name="uniftest"; version="1.1"; sha256="0a37m7l3lc6rznx10w9h9krnn5paim2i2wvw47ckwag7bv0d4pm4"; depends=[orthopolynom]; broken = true; }; + uniswappeR = derive2 { name="uniswappeR"; version="0.6.1"; sha256="0vsw2jvp3gndjrl7v9fndpaqx4kryf4szsz1si1cx1rxhqvlsf92"; depends=[dplyr ggplot2 ghql jsonlite lubridate patchwork purrr reticulate rlang scales tidyr]; broken = true; }; uplift = derive2 { name="uplift"; version="0.3.5"; sha256="11xikfmg6dg8mhwqq6wq9j9aw4ljh84vywpm9v0fk8r5a1wyy2f6"; depends=[coin MASS penalized RItools tables]; broken = true; }; uplifteval = derive2 { name="uplifteval"; version="0.1.0"; sha256="1gnn40c47rpx40j210bz6fb48d70p6spv3drr8hd5b3vzfz6686c"; depends=[dplyr ggplot2 gridExtra whisker]; broken = true; }; usdoj = derive2 { name="usdoj"; version="1.1.0"; sha256="0ddvp3qh1ynzzpzq8rgblkb1z5j5jwyzkfgd9xyzdkcby90k7zya"; depends=[anytime dplyr httr jsonlite stringr tibble]; broken = true; }; @@ -23469,19 +23937,20 @@ in with self; { uwo4419 = derive2 { name="uwo4419"; version="0.3.0"; sha256="0hk5qhyarjxz7ngj5ak37vx0rak6xv0hfb4sdrsbci3kv5fqijv7"; depends=[DescTools dplyr ggplot2 gmodels haven magrittr psych RColorBrewer rio tibble tidyr]; broken = true; }; validateRS = derive2 { name="validateRS"; version="1.0.0"; sha256="1ivw9ddr6z2wrsqvhbn87p5pikhkxlz8p45pb5nq13dvs359vkww"; depends=[data_table reshape2 triangle truncnorm]; broken = true; }; validatedb = derive2 { name="validatedb"; version="0.1.4"; sha256="0lq0d0hcszd2jgip9m5j07lgbc279nxryz5drzv2qaap357ic9l1"; depends=[dbplyr dplyr validate]; broken = true; }; + valse = derive2 { name="valse"; version="0.1-0"; sha256="0l3fdsgrmalifcxscjsxsfq07v8vipg0rdw6xh94q7xw5gdfsms0"; depends=[cowplot ggplot2 MASS reshape2]; broken = true; }; valuer = derive2 { name="valuer"; version="1.1.2"; sha256="0mbwzsvy34ppngyxdzpd9w1r4f00cik4maqab9kpiflrrv9xdp78"; depends=[ggplot2 orthopolynom R6 Rcpp RcppEigen timeDate yuima]; broken = true; }; vanddraabe = derive2 { name="vanddraabe"; version="1.1.1"; sha256="094kd72slq0n3pk0p6zps241aszb9yql49h4mr007zf0kn8wlf8v"; depends=[bio3d cowplot fastcluster ggplot2 openxlsx reshape2 scales]; broken = true; }; vbdm = derive2 { name="vbdm"; version="0.0.4"; sha256="1rbff0whhbfcf6q5wpr3ws1n4n2kcr79yifcni12vxg69a3v6dd3"; depends=[]; broken = true; }; vbsr = derive2 { name="vbsr"; version="0.0.5"; sha256="1avskbxxyinjjdga4rnghcfvd4sypv4m39ysfaij5avvmi89bx3b"; depends=[]; broken = true; }; - vcfppR = derive2 { name="vcfppR"; version="0.3.5"; sha256="1shk4xr1i3azbh5s13ngzny2gysa4mbkfv240ky22yqdcj3qxi37"; depends=[Rcpp]; broken = true; }; - vcrpart = derive2 { name="vcrpart"; version="1.0-4"; sha256="1mg87jpdih33lalxhfcxbri439d4cgi7hqdrnvijr7qabjmnc7p4"; depends=[formula_tools nlme numDeriv partykit rpart sandwich strucchange ucminf zoo]; broken = true; }; vdra = derive2 { name="vdra"; version="1.0.0"; sha256="1ldl3wm55a5ywc5398lzky6l6x5a9djxwrqnrd570fg4iq6d30l1"; depends=[]; broken = true; }; vennLasso = derive2 { name="vennLasso"; version="0.1.6"; sha256="0maydvx0qhdn5alqzqxjn485y9hw9qdr1xvgkmgwnjq59vni6d31"; depends=[foreach igraph MASS Matrix Rcpp RcppEigen RcppNumerical survival VennDiagram visNetwork]; broken = true; }; vertexenum = derive2 { name="vertexenum"; version="1.0.2"; sha256="16ywz3z1kzhb3knhhi2i5igm3djdaaxyyrw69wkc5saa7ayhdb4y"; depends=[numbers]; broken = true; }; vetools = derive2 { name="vetools"; version="1.3-28"; sha256="1470xgqdq9n5kj86gdfds15k3vqidk3h99zi3g76hhyfl8gyl1c0"; depends=[lubridate maptools plyr scales sp stringr tis xts]; broken = true; }; viewshed3d = derive2 { name="viewshed3d"; version="4.0.0"; sha256="039xx39w3k3hckf0qci7j1364s47vja5s18siqjh6c5yy1w8q737"; depends=[data_table hyper_fit lidR nabor pkgcond plotrix pracma raster rgl sp viridis]; broken = true; }; viopoints = derive2 { name="viopoints"; version="0.2-1"; sha256="0cpbkkzm1rxch8gnvlmmzy8g521f5ang3nhlcnin419gha0w6avf"; depends=[]; broken = true; }; + viruslearner = derive2 { name="viruslearner"; version="0.0.1"; sha256="1x8d3zs6dzl34y7lamkxsn7f9pxy5034yn2q79g3fwzmvvrnniy5"; depends=[dials dplyr hardhat parsnip recipes rsample stacks tidyselect tune workflows workflowsets yardstick]; broken = true; }; vlad = derive2 { name="vlad"; version="0.2.2"; sha256="0c3zfjm5nj7iisfnl822sk8wdszv6hcsaf51sn7aqnlp579hq2jk"; depends=[BH checkmate dplyr magrittr Rcpp RcppArmadillo tidyr]; broken = true; }; + vlda = derive2 { name="vlda"; version="1.1.5"; sha256="17xn8qqh043dm05ib3h4l1qx07wxncf5d06x9l1wl6jbkvnsm2nq"; depends=[dplyr ggiraph ggplot2 ggrepel ggsci]; broken = true; }; vmd = derive2 { name="vmd"; version="0.1.0"; sha256="17c06a9l6i90ivpvf3rgv6yrsqv36qmywmmy92y5b81zqhgmh907"; depends=[ggplot2 magrittr R6 Rcpp reshape2 scales]; broken = true; }; vmsbase = derive2 { name="vmsbase"; version="2.2.1"; sha256="1xxn0vm9r8kiix6whlc12r0wanf6acrl9a86h44nwm019xfmlfyp"; depends=[AMORE cairoDevice chron cluster DBI ecodist fields foreign ggmap ggplot2 gmt gsubfn gWidgets2 gWidgets2RGtk2 intervals mapdata maps maptools marmap outliers PBSmapping plotrix R6 RSQLite sp sqldf VennDiagram]; broken = true; }; vortexR = derive2 { name="vortexR"; version="1.1.7"; sha256="06i2rqbc3h2kv8jjrdlrg03xrzb3yiyzpnv2rvlkjcnn46f84bgf"; depends=[betareg data_table GGally ggplot2 glmulti gtools irr plyr R_utils stringr vortexRdata]; broken = true; }; @@ -23489,8 +23958,10 @@ in with self; { vrcp = derive2 { name="vrcp"; version="0.1.1"; sha256="1wrch1dqy752gkj24h1dgi2x3kf1797xj4pf1s9mszf3x3ic905d"; depends=[ggplot2]; broken = true; }; vrmlgen = derive2 { name="vrmlgen"; version="1.4.9"; sha256="0lifhhf41yml4k83wpkssl14jgn8jaw1lcknwbci1sd8s1c4478l"; depends=[]; broken = true; }; vwr = derive2 { name="vwr"; version="0.3.0"; sha256="1h790vjcdfngs1siwldvqz8jrxpkajl3266lzadfnmchfan1x7xv"; depends=[lattice latticeExtra stringdist]; broken = true; }; + vyos = derive2 { name="vyos"; version="1.0.2"; sha256="0mqhxib04frcwqxq8qchmxm4d4kr4q2pjf3ki99q5dillihhk2fs"; depends=[crayon digest dplyr glue httr httr2 jsonlite lubridate magrittr purrr Rcpp rlang rlist stringr tibble]; broken = true; }; wBoot = derive2 { name="wBoot"; version="1.0.3"; sha256="08qgkkv6jvqmxq5gvfp7jbrc3k8mxajfww7k8a3p8888aq411p7q"; depends=[boot simpleboot]; broken = true; }; wSVM = derive2 { name="wSVM"; version="0.1-7"; sha256="0c7rblzgagwfb8mmddkc0nd0f9rv6kapw8znpwapv3fv0j2qzq7h"; depends=[MASS quadprog]; broken = true; }; + wTO = derive2 { name="wTO"; version="2.0.2"; sha256="0c5cr48h2zvp629iyg1n05fgh1v2wvc5bmzc75c1flrj2rrfs83v"; depends=[data_table HiClimR igraph magrittr plyr reshape2 Rfast som visNetwork]; broken = true; }; waccR = derive2 { name="waccR"; version="0.1.0"; sha256="092p1bibyqx1gcrch68l9ilzilg5aqf46b6iagm562292cfi074l"; depends=[dplyr lubridate magrittr rvest tibble xml2]; broken = true; }; wahc = derive2 { name="wahc"; version="1.0"; sha256="1324xhajgmxq6dxzpnkcvxdpm2m3g47drhyb2b3h227cn3aakxyg"; depends=[]; broken = true; }; water = derive2 { name="water"; version="0.8"; sha256="0qglf922dlgi41jzz3sivq7ckmzl8axqjfg4klcgnddycmm3ha5j"; depends=[raster rgdal sp]; broken = true; }; @@ -23498,23 +23969,29 @@ in with self; { weathercan = derive2 { name="weathercan"; version="0.6.2"; sha256="1mr926rymacx1f8k79pwhcyl5xcymq77l4dxaa2ddlrx5cmyh5cv"; depends=[dplyr httr lubridate memoise purrr rappdirs readr rlang rvest stringi stringr tidyr tidyselect xml2]; broken = true; }; weatherr = derive2 { name="weatherr"; version="0.1.3"; sha256="14w7kkja3a1zmdc7l084iprx1czqgdfjzjc29wdlwzmaiq02c4d3"; depends=[ggmap lubridate RJSONIO XML]; broken = true; }; webTRISr = derive2 { name="webTRISr"; version="0.2.0"; sha256="10xj8qvibhnywsxd1yb4laz6b38qwn483a7bflizsndsgrbzdi5n"; depends=[dplyr httr jsonlite lubridate magrittr purrr readr sf stringr]; broken = true; }; + webmorphR = derive2 { name="webmorphR"; version="0.1.1"; sha256="1f3sjzck4ys1knn2jmk472yww65wblrdwdlvn1gz2a00nc738rn4"; depends=[dplyr geomorph ggplot2 httr jsonlite magick progress rsvg]; broken = true; }; webtools = derive2 { name="webtools"; version="0.7.12"; sha256="0qbwsm1cypa39m2h5qmi1r42sc74msf0ag6w0dyzns1mm0ipyzxp"; depends=[crayon dplyr jsonlite pkgsearch RCurl readr rstudioapi stringr tibble]; broken = true; }; weco = derive2 { name="weco"; version="1.2"; sha256="1prk8hn782pd8g2rbbaj7y10vjimqs9n8i4rab6aw6fc3k759d6b"; depends=[]; broken = true; }; weibull4 = derive2 { name="weibull4"; version="1.0.0"; sha256="1a95yw67iy7dqib33v31apxmskl019zng66jrlflbqx6p2vjdh30"; depends=[]; broken = true; }; + weightedZdiff = derive2 { name="weightedZdiff"; version="0.1.0"; sha256="1mrhjg0h7qiwya8jrmf5h4gc352ahc6fczlk5kfhqw5vkwr0b1k3"; depends=[]; broken = true; }; wellknown = derive2 { name="wellknown"; version="0.7.4"; sha256="0d0sxmp58dscfxny1492lgw8x0ypwakmrkkl7rcfs2fz7v26ygj8"; depends=[BH jsonlite Rcpp wk]; broken = true; }; + wgeesel = derive2 { name="wgeesel"; version="1.5"; sha256="0lybvsq5168cjybzv2dbyx2z8aakcx7i7ivm8zc90haiispm9n5x"; depends=[bindata CRTgeeDR geepack MASS PoisNor]; broken = true; }; wiad = derive2 { name="wiad"; version="0.0.1.0"; sha256="1yr1cng5659n8chfghpyfxvqzl8b57vdjzv5m22cbcvrlq6m6p4j"; depends=[abind data_table dplyr DT shiny]; broken = true; }; wikipediatrend = derive2 { name="wikipediatrend"; version="2.1.6"; sha256="11ng7qsb4954mgsz55ix86z0ynh4xgflcp6dzl0y4zi6zdrj87i7"; depends=[ggplot2 glue hellno httr pageviews rvest stringr xml2]; broken = true; }; + wildrwolf = derive2 { name="wildrwolf"; version="0.6.1"; sha256="1cl3rv8v3y8y86cl6y5da63qkzha37f20naaqrypk65rn47savig"; depends=[dreamerr fabricatr fixest fwildclusterboot MASS]; broken = true; }; wildviz = derive2 { name="wildviz"; version="0.1.2"; sha256="03vhacaxp5fahq5afcf1q0qvmndpqc6a63pnins7h3p8ryvlpx14"; depends=[DBI dplyr ggplot2 ggthemes httr jsonlite lubridate plotly purrr rnoaa RSQLite shiny shinythemes tibble tidyr]; broken = true; }; winRatioAnalysis = derive2 { name="winRatioAnalysis"; version="0.1.0"; sha256="1msvc06bfzw9clinxbvr5fdw38dff0c0xii46182nwnk5kj0libr"; depends=[data_table JM Matrix MLEcens mvtnorm nlme plyr pssm survival]; broken = true; }; wingui = derive2 { name="wingui"; version="0.2"; sha256="0yf6k33qpcjzyb7ckwsxpdw3pcsja2wsf08vaca7qw27yxrbmaa3"; depends=[Rcpp]; broken = true; }; wiseR = derive2 { name="wiseR"; version="1.0.1"; sha256="187ylwhk06957x9zm5r0m6w9wg08im83myz3s4gr927ig8yv3b5f"; depends=[arules bnlearn DescTools dplyr DT graph HydeNet igraph linkcomm missRanger psych RBGL Rgraphviz rhandsontable rintrojs shiny shinyalert shinyBS shinycssloaders shinydashboard shinyWidgets visNetwork]; broken = true; }; wkNNMI = derive2 { name="wkNNMI"; version="1.0.0"; sha256="0qpl1b2134kz9mjl38w93lp3g6kpv9ygv9hygpssm845k02hkw7c"; depends=[foreach infotheo]; broken = true; }; wmlf = derive2 { name="wmlf"; version="0.1.2"; sha256="0zxw84l5v12r15hpyd1kbajjz3cbkn5g884kmj72y7yi0yi1b6d6"; depends=[waveslim]; broken = true; }; + wordbankr = derive2 { name="wordbankr"; version="1.0.3"; sha256="1c09nj9gx71an6w6l4z4g08xpp8a36kygh4q140gi19d36ywjdra"; depends=[assertthat DBI dbplyr dplyr glue jsonlite lifecycle purrr quantregGrowth rlang RMySQL robustbase stringr tidyr]; broken = true; }; wordgraph = derive2 { name="wordgraph"; version="0.1.0"; sha256="06q42sjdj7i680zqx66hsvrpmkrlcyxnvsk1lygnqhlv97ycl3vv"; depends=[dplyr ggplot2 ggraph plyr purrr tibble tidygraph]; broken = true; }; wordmatch = derive2 { name="wordmatch"; version="1.0"; sha256="0zscp361qf79y1zsliga18hc7wj36cnydshrqb9pv67b65njrznz"; depends=[plyr reshape2]; broken = true; }; workboots = derive2 { name="workboots"; version="0.2.0"; sha256="0n55iypiw59n1f09fbynsdznv5mz885rbz4gaqi48ig0hwz896b7"; depends=[assertthat dplyr generics lifecycle Metrics purrr rlang rsample tibble tidyr vip workflows]; broken = true; }; worldriskpollr = derive2 { name="worldriskpollr"; version="0.7.4"; sha256="1m3apmdf0ksih7yq9bp5nkyyyxkp6hdw3jjx071df83c4iv8abm9"; depends=[curl dplyr httr janitor labelled magrittr rlang sjlabelled tidyr]; broken = true; }; worms = derive2 { name="worms"; version="0.2.2"; sha256="183chjdi5qvsmdznvc9igcxaz769a37rwh5nzgvf5zf012a85wir"; depends=[httr plyr]; broken = true; }; + woylier = derive2 { name="woylier"; version="0.0.5"; sha256="1xa2qdkkqnd6c98a15rfsa3m8jil7gipr4mann3dhkf0zl59g0a4"; depends=[dplyr geozoo tibble tourr]; broken = true; }; wux = derive2 { name="wux"; version="2.2-1"; sha256="0iw0kf0wfspnpc83v7gxhcakmp0z34cccnm0jn9c2za9ay9l2swv"; depends=[abind class corpcor fields gdata Hmisc ncdf4 reshape rgdal rgeos rworldmap sp stringr]; broken = true; }; wvtool = derive2 { name="wvtool"; version="1.0"; sha256="0x9awj6g5lzqp2lhwgh9ib7jmfdzyhwazrjvw1vwacqqfhbz8qxv"; depends=[]; broken = true; }; x12GUI = derive2 { name="x12GUI"; version="0.13.0"; sha256="1mga7g9gwb3nv2qs27lz4n9rp6j3svads28hql88sxaif6is3nk1"; depends=[cairoDevice Hmisc lattice RGtk2 stringr x12]; broken = true; }; @@ -23527,6 +24004,7 @@ in with self; { xpose_nlmixr = derive2 { name="xpose.nlmixr"; version="0.3.0"; sha256="1qxcq18mp5zxc7karixjfi93zm5mvpfnvp8sd8x0ibdbq8vk20my"; depends=[crayon dplyr ggplot2 magrittr nlme nlmixr rlang stringr tibble tidyr vpc xpose]; broken = true; }; xptr = derive2 { name="xptr"; version="1.1.3"; sha256="0352vs8dz61hgpwnf3r9r9haz3adg2wk9qxzrv313p1fcyfjz91v"; depends=[]; broken = true; }; xspliner = derive2 { name="xspliner"; version="0.0.4"; sha256="1j3wlw39r3ahhdfq3rks1zhnlmz14f4wk7bl7gf94yffasqg6k2r"; depends=[dplyr ggplot2 magrittr mgcv pdp pROC purrr tidyr]; broken = true; }; + xtal = derive2 { name="xtal"; version="1.15"; sha256="1zq3vd5x3vw6acn47yd2x7kflr9sm3znmdkm68cs64ha54jbl3vs"; depends=[]; broken = true; }; xtensor = derive2 { name="xtensor"; version="0.14.1-0"; sha256="1qni98kxyaggb1ixmmj1hh1jmbz8rhji91nifgrjxc1wsvmvswh0"; depends=[Rcpp]; broken = true; }; xtermStyle = derive2 { name="xtermStyle"; version="3.0.5"; sha256="1q4qq8w4sgxbbb1x0i4k5xndvwisvjszg830wspwb37wigxz8xvz"; depends=[]; broken = true; }; xtreg2way = derive2 { name="xtreg2way"; version="1.0.0"; sha256="0wllz0frakmadavgpqhd2b8fiw6wgwh5wzd270czc6cm5bq9gfng"; depends=[MASS Matrix pracma]; broken = true; }; diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index 95e062808bc31..cb5cc5220dfe8 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -310,12 +310,17 @@ let rmsb = [ self.rstantools ]; gastempt = [ self.rstantools ]; interactiveDisplay = [ self.BiocManager ]; + disbayes = [ self.rstantools ]; + tipsae = [ self.rstantools ]; + TriDimRegression = [ self.rstantools ]; + bbmix = [ self.rstantools ]; }; packagesWithNativeBuildInputs = { adbcpostgresql = [ pkgs.postgresql ]; adimpro = [ pkgs.imagemagick ]; animation = [ pkgs.which ]; + Apollonius = with pkgs; [ pkg-config gmp.dev mpfr.dev ]; arrow = with pkgs; [ pkg-config cmake ] ++ lib.optionals stdenv.isDarwin [ intltool ]; audio = [ pkgs.portaudio ]; BayesSAE = [ pkgs.gsl ]; @@ -323,6 +328,7 @@ let BayesXsrc = with pkgs; [ readline.dev ncurses gsl ]; bioacoustics = [ pkgs.fftw.dev pkgs.cmake ]; bigGP = [ pkgs.mpi ]; + bigrquerystorage = with pkgs; [ grpc protobuf which ]; bio3d = [ pkgs.zlib ]; BiocCheck = [ pkgs.which ]; Biostrings = [ pkgs.zlib ]; @@ -344,9 +350,14 @@ let diversitree = with pkgs; [ gsl fftw ]; exactextractr = [ pkgs.geos ]; EMCluster = [ pkgs.lapack ]; + fangs = [ pkgs.cargo ]; + fcl = [ pkgs.cargo ]; fftw = [ pkgs.fftw.dev ]; fftwtools = with pkgs; [ fftw.dev pkg-config ]; + fingerPro = [ pkgs.gsl ]; Formula = [ pkgs.gmp ]; + frailtyMMpen = [ pkgs.gsl ]; + gamstransfer = [ pkgs.zlib ]; gdalraster = [ pkgs.pkg-config ]; gdtools = with pkgs; [ cairo.dev fontconfig.lib freetype.dev ]; GeneralizedWendland = [ pkgs.gsl ]; @@ -362,13 +373,20 @@ let gert = [ pkgs.libgit2 ]; haven = with pkgs; [ zlib.dev ]; hellorust = [ pkgs.cargo ]; + hgwrr = [ pkgs.gsl ]; h5vc = with pkgs; [ zlib.dev bzip2.dev xz.dev ]; yyjsonr = with pkgs; [ zlib.dev ]; + RNifti = with pkgs; [ zlib.dev ]; + RNiftyReg = with pkgs; [ zlib.dev ]; highs = [ pkgs.which pkgs.cmake ]; + crc32c = [ pkgs.which pkgs.cmake ]; rbedrock = [ pkgs.zlib.dev pkgs.which pkgs.cmake ]; HiCseg = [ pkgs.gsl ]; imager = [ pkgs.xorg.libX11.dev ]; + imbibe = [ pkgs.zlib.dev ]; + image_CannyEdges = with pkgs; [ fftw.dev libpng.dev ]; iBMQ = [ pkgs.gsl ]; + jack = [ pkgs.pkg-config ]; JavaGD = [ pkgs.jdk ]; jpeg = [ pkgs.libjpeg.dev ]; jqr = [ pkgs.jq.dev ]; @@ -377,7 +395,10 @@ let kza = [ pkgs.fftw.dev ]; leidenAlg = [ pkgs.gmp.dev ]; Libra = [ pkgs.gsl ]; + libstable4u = [ pkgs.gsl ]; + heck = [ pkgs.cargo ]; LOMAR = [ pkgs.gmp.dev ]; + littler = [ pkgs.libdeflate ]; lpsymphony = with pkgs; [ pkg-config gfortran gettext ]; lwgeom = with pkgs; [ proj geos gdal ]; rsbml = [ pkgs.pkg-config ]; @@ -390,6 +411,7 @@ let mzR = with pkgs; [ zlib netcdf ]; nanonext = with pkgs; [ mbedtls nng ]; ncdf4 = [ pkgs.netcdf ]; + neojags = [ pkgs.jags ]; nloptr = with pkgs; [ nlopt pkg-config ]; n1qn1 = [ pkgs.gfortran ]; odbc = [ pkgs.unixODBC ]; @@ -401,6 +423,7 @@ let pbdZMQ = [ pkgs.pkg-config ] ++ lib.optionals stdenv.isDarwin [ pkgs.which ]; pcaL1 = [ pkgs.pkg-config pkgs.clp ]; pdftools = [ pkgs.poppler.dev ]; + PEPBVS = [ pkgs.gsl ]; phytools = [ pkgs.which ]; PKI = [ pkgs.openssl.dev ]; png = [ pkgs.libpng.dev ]; @@ -425,7 +448,7 @@ let Rhpc = with pkgs; [ zlib bzip2.dev icu xz.dev mpi pcre.dev ]; Rhtslib = with pkgs; [ zlib.dev automake autoconf bzip2.dev xz.dev curl.dev ]; rjags = [ pkgs.jags ]; - rJava = with pkgs; [ zlib bzip2.dev icu xz.dev pcre.dev jdk libzip ]; + rJava = with pkgs; [ zlib bzip2.dev icu xz.dev pcre.dev jdk libzip libdeflate ]; Rlibeemd = [ pkgs.gsl ]; rmatio = [ pkgs.zlib.dev pkgs.pkg-config ]; Rmpfr = with pkgs; [ gmp mpfr.dev ]; @@ -454,6 +477,7 @@ let sdcTable = with pkgs; [ gmp glpk ]; seewave = with pkgs; [ fftw.dev libsndfile.dev ]; seqinr = [ pkgs.zlib.dev ]; + smcryptoR = with pkgs; [ cargo rustc which ]; webp = [ pkgs.pkg-config ]; seqminer = with pkgs; [ zlib.dev bzip2 ]; sf = with pkgs; [ gdal proj geos libtiff curl ]; @@ -461,6 +485,10 @@ let string2path = [ pkgs.cargo ]; terra = with pkgs; [ gdal proj geos ]; tok = [ pkgs.cargo ]; + rshift = [ pkgs.cargo ]; + arcgisutils = with pkgs; [ cargo rustc ]; + arcgisgeocode = with pkgs; [ cargo rustc ]; + arcgisplaces = with pkgs; [ pkg-config openssl.dev cargo rustc ]; apcf = with pkgs; [ geos ]; SemiCompRisks = [ pkgs.gsl ]; showtext = with pkgs; [ zlib libpng icu freetype.dev ]; @@ -497,7 +525,7 @@ let Rsubread = [ pkgs.zlib.dev ]; XVector = [ pkgs.zlib.dev ]; Rsamtools = with pkgs; [ zlib.dev curl.dev bzip2 xz ]; - rtracklayer = [ pkgs.zlib.dev ]; + rtracklayer = with pkgs; [ zlib.dev curl.dev ]; affyio = [ pkgs.zlib.dev ]; snpStats = [ pkgs.zlib.dev ]; vcfppR = [ pkgs.curl.dev pkgs.bzip2 pkgs.zlib.dev pkgs.xz]; @@ -533,6 +561,7 @@ let redux = [ pkgs.pkg-config ]; rswipl = with pkgs; [ cmake pkg-config ]; rrd = [ pkgs.pkg-config ]; + surveyvoi = [ pkgs.pkg-config ]; Rbwa = [ pkgs.zlib.dev ]; trackViewer = [ pkgs.zlib.dev ]; themetagenomics = [ pkgs.zlib.dev ]; @@ -544,16 +573,19 @@ let ragg = [ pkgs.pkg-config ]; qqconf = [ pkgs.pkg-config ]; qspray = [ pkgs.pkg-config ]; + ratioOfQsprays = [ pkgs.pkg-config ]; + symbolicQspray = [ pkgs.pkg-config ]; + sphereTessellation = [ pkgs.pkg-config ]; vapour = [ pkgs.pkg-config ]; }; packagesWithBuildInputs = { # sort -t '=' -k 2 - asciicast = with pkgs; [ xz.dev bzip2.dev zlib.dev icu.dev ]; + asciicast = with pkgs; [ xz.dev bzip2.dev zlib.dev icu.dev libdeflate ]; island = [ pkgs.gsl.dev ]; svKomodo = [ pkgs.which ]; ulid = [ pkgs.zlib.dev ]; - unrtf = with pkgs; [ xz.dev bzip2.dev zlib.dev icu.dev ]; + unrtf = with pkgs; [ xz.dev bzip2.dev zlib.dev icu.dev libdeflate ]; nat = [ pkgs.which ]; nat_templatebrains = [ pkgs.which ]; pbdZMQ = [ pkgs.zeromq ] ++ lib.optionals stdenv.isDarwin [ pkgs.darwin.binutils ]; @@ -572,7 +604,7 @@ let RMark = [ pkgs.which ]; RPushbullet = [ pkgs.which ]; stpphawkes = [ pkgs.gsl ]; - registr = with pkgs; [ icu.dev zlib.dev bzip2.dev xz.dev ]; + registr = with pkgs; [ icu.dev zlib.dev bzip2.dev xz.dev libdeflate ]; RCurl = [ pkgs.curl.dev ]; R2SWF = [ pkgs.pkg-config ]; rDEA = [ pkgs.glpk ]; @@ -628,6 +660,7 @@ let Rsymphony = with pkgs; [ symphony doxygen graphviz subversion cgl clp]; tcltk2 = with pkgs; [ tcl tk ]; rswipl = with pkgs; [ ncurses.dev libxcrypt zlib.dev ]; + GrafGen = [ pkgs.zlib ]; tikzDevice = with pkgs; [ which texliveMedium ]; gridGraphics = [ pkgs.which ]; adimpro = with pkgs; [ which xorg.xdpyinfo ]; @@ -670,6 +703,7 @@ let zlib = [ pkgs.zlib.dev ]; divest = [ pkgs.zlib.dev ]; hipread = [ pkgs.zlib.dev ]; + jack = with pkgs; [ gmp.dev mpfr.dev ]; jackalope = with pkgs; [ zlib.dev xz.dev bzip2.dev ]; largeList = [ pkgs.zlib.dev ]; mappoly = [ pkgs.zlib.dev ]; @@ -725,10 +759,13 @@ let RITCH = [ pkgs.zlib.dev ]; RcppMeCab = [ pkgs.mecab ]; PING = [ pkgs.gsl ]; + PROJ = [ pkgs.proj.dev ]; RcppAlgos = [ pkgs.gmp.dev ]; RcppBigIntAlgos = [ pkgs.gmp.dev ]; spaMM = [ pkgs.gsl ]; shrinkTVP = [ pkgs.gsl ]; + sbrl = with pkgs; [ gsl gmp.dev ]; + surveyvoi = with pkgs; [ gmp.dev mpfr.dev ]; unigd = with pkgs; [ cairo.dev libpng.dev ]; HilbertVisGUI = [ pkgs.gtkmm2.dev ]; textshaping = with pkgs; [ harfbuzz.dev freetype.dev fribidi libpng ]; @@ -739,216 +776,103 @@ let qqconf = [ pkgs.fftw.dev ]; spFW = [ pkgs.fftw.dev ]; qspray = with pkgs; [ gmp.dev mpfr.dev ]; + ratioOfQsprays = with pkgs; [ gmp.dev mpfr.dev ]; + symbolicQspray = with pkgs; [ gmp.dev mpfr.dev ]; + sphereTessellation = with pkgs; [ gmp.dev mpfr.dev ]; vapour = with pkgs; [ proj.dev gdal ]; MedianaDesigner = [ pkgs.zlib.dev ]; ChemmineOB = [ pkgs.eigen ]; }; packagesRequiringX = [ - "accrual" - "ade4TkGUI" - "analogue" "analogueExtra" "AnalyzeFMRI" "AnnotLists" - "AnthropMMD" - "aplpack" "asbio" - "BAT" "BCA" - "betapart" - "BiodiversityR" - "bio_infer" - "bipartite" "biplotbootGUI" - "blender" "cairoDevice" - "canceR" - "CCTpack" "cncaGUI" - "cocorresp" "CommunityCorrelogram" - "confidence" - "constrainedKriging" - "ConvergenceConcepts" - "cpa" - "DALY" "dave" - "Deducer" "DeducerPlugInExample" "DeducerPlugInScaling" "DeducerSpatial" "DeducerSurvival" "DeducerText" "Demerelate" - "detrendeR" + "diveR" "dpa" "dynamicGraph" - "dynBiplotGUI" "EasyqpcR" - "EcoVirtual" "exactLoglinTest" - "fat2Lpoly" - "fbati" - "FD" - "feature" - "FeedbackTS" - "FFD" - "fgui" "fisheyeR" "forams" "forensim" - "FreeSortR" - "fscaret" - "gcmr" - "geomorph" - "geoR" - "georob" "GGEBiplotGUI" - "gnm" - "GrapheR" - "GroupSeq" "gsubfn" - "GUniFrac" "gWidgets2RGtk2" "gWidgets2tcltk" - "HH" "HiveR" "ic50" "iDynoR" - "in2extRemes" "iplots" - "isopam" - "IsotopeR" - "JGR" - "KappaGUI" "likeLTD" - "logmult" "loon" "loon_ggplot" - "LS2Wstat" - "MareyMap" - "memgene" - "metacom" + "loon_shiny" + "loon_tourr" "Meth27QC" - "migui" - "miniGUI" "mixsep" - "MplusAutomation" - "mpmcorrelogram" - "mritc" - "multgee" "multibiplotGUI" "OligoSpecificitySystem" - "onemap" - "OpenRepGrid" + "optbdmaeAT" + "optrcdmaeAT" "paleoMAS" - "pbatR" - "PBSadmb" - "PBSmodelling" - "PCPS" - "pez" - "phylotools" - "picante" - "plotSEMM" - "plsRbeta" - "plsRglm" - "PopGenReport" - "poppr" - "powerpkg" - "PredictABEL" - "prefmod" - "PrevMap" - "r4ss" "RandomFields" - "rareNMtests" - "rAverage" "rfviz" "RclusTool" - "Rcmdr" "RcmdrPlugin_coin" - "RcmdrPlugin_depthTools" - "RcmdrPlugin_DoE" - "RcmdrPlugin_EACSPIR" - "RcmdrPlugin_EBM" - "RcmdrPlugin_EcoVirtual" - "RcmdrPlugin_EZR" - "RcmdrPlugin_FactoMineR" "RcmdrPlugin_FuzzyClust" - "RcmdrPlugin_HH" "RcmdrPlugin_IPSUR" - "RcmdrPlugin_KMggplot2" "RcmdrPlugin_lfstat" - "RcmdrPlugin_MA" - "RcmdrPlugin_MPAStats" - "RcmdrPlugin_orloca" "RcmdrPlugin_PcaRobust" "RcmdrPlugin_plotByGroup" "RcmdrPlugin_pointG" - "RcmdrPlugin_ROC" "RcmdrPlugin_sampling" "RcmdrPlugin_SCDA" "RcmdrPlugin_SLC" - "RcmdrPlugin_sos" "RcmdrPlugin_steepness" - "RcmdrPlugin_survival" - "RcmdrPlugin_TeachingDemos" - "RcmdrPlugin_temis" - "RcmdrPlugin_UCA" - "recluster" - "relimp" - "RHRV" "rich" - "RNCEP" - "RSDA" "RSurvey" "simba" - "Simile" "SimpleTable" "SOLOMON" - "soundecology" - "spatsurv" - "sqldf" - "SSDforR" - "statcheck" - "StatDA" - "STEPCAM" - "stosim" + "soptdmaeA" "strvalidator" "stylo" - "svDialogstcltk" - "svIDE" - "svSocket" - "svWidgets" - "SYNCSA" "SyNet" "switchboard" - "tcltk2" - "TestScorer" - "TIMP" - "tkrplot" - "tmap" - "tspmeta" + "tkImgR" "TTAinterfaceTrendAnalysis" "twiddler" "uHMM" - "vcdExtra" "VecStatGraphs3D" - "vegan" - "vegan3d" - "vegclust" - "x12GUI" ]; packagesRequiringHome = [ "aroma_affymetrix" "aroma_cn" "aroma_core" + "avotrex" + "beer" "ceramic" "connections" + "covidmx" "csodata" "DiceView" "facmodTS" + "gasanalyzer" "margaret" "MSnID" "OmnipathR" @@ -1048,6 +972,7 @@ let "benchmarkfdrData2019" "bodymapRat" "clustifyrdatahub" + "CTexploreR" "depmap" "emtdata" "metaboliteIDmapping" @@ -1069,6 +994,11 @@ let # this is a straightforward approach. Example where patching was necessary # -> arrow 14.0.0.2 on CRAN; was lagging behind libarrow release: # https://github.com/apache/arrow/issues/39698 ) + + vegan3d = old.vegan3d.overrideAttrs (attrs: { + RGL_USE_NULL = "true"; + }); + arrow = old.arrow.overrideAttrs (attrs: { src = pkgs.arrow-cpp.src; name = "r-arrow-${pkgs.arrow-cpp.version}"; @@ -1157,10 +1087,18 @@ let preConfigure = "patchShebangs configure"; }); + Colossus = old.Colossus.overrideAttrs (_: { + postPatch = "patchShebangs configure"; + }); + gmailr = old.gmailr.overrideAttrs (attrs: { postPatch = "patchShebangs configure"; }); + heck = old.heck.overrideAttrs (attrs: { + postPatch = "patchShebangs configure"; + }); + surtvep = old.surtvep.overrideAttrs (attrs: { postPatch = "patchShebangs configure"; }); @@ -1178,6 +1116,10 @@ let patchPhase = "patchShebangs configure"; }); + RcppGetconf = old.RcppGetconf.overrideAttrs (attrs: { + postPatch = "patchShebangs configure"; + }); + SpliceWiz = old.SpliceWiz.overrideAttrs (attrs: { postPatch = "patchShebangs configure"; }); @@ -1203,6 +1145,26 @@ let patchPhase = "patchShebangs configure"; }); + cisPath = old.cisPath.overrideAttrs (attrs: { + hardeningDisable = [ "format" ]; + }); + + HilbertVis = old.HilbertVis.overrideAttrs (attrs: { + hardeningDisable = [ "format" ]; + }); + + HilbertVisGUI = old.HilbertVisGUI.overrideAttrs (attrs: { + hardeningDisable = [ "format" ]; + }); + + MANOR = old.MANOR.overrideAttrs (attrs: { + hardeningDisable = [ "format" ]; + }); + + rGADEM = old.rGADEM.overrideAttrs (attrs: { + hardeningDisable = [ "format" ]; + }); + rsgeo = old.rsgeo.overrideAttrs (attrs: { nativeBuildInputs = [ pkgs.cargo ] ++ attrs.nativeBuildInputs; postPatch = "patchShebangs configure"; @@ -1303,19 +1265,12 @@ let propagatedBuildInputs = attrs.propagatedBuildInputs ++ [ pkgs.quarto ]; postPatch = '' substituteInPlace "R/quarto.R" \ - --replace "path_env <- Sys.getenv(\"QUARTO_PATH\", unset = NA)" "path_env <- Sys.getenv(\"QUARTO_PATH\", unset = '${lib.getBin pkgs.quarto}/bin/quarto')" + --replace-fail "Sys.getenv(\"QUARTO_PATH\", unset = NA_character_)" "Sys.getenv(\"QUARTO_PATH\", unset = '${lib.getBin pkgs.quarto}/bin/quarto')" ''; }); - # backported patch from 1.9 - Rhisat2= old.Rhisat2.overrideAttrs (attrs: { - patches = [ (pkgs.fetchpatch { - url = "https://github.com/fmicompbio/Rhisat2/commit/a0f27b018831b39f080f99e6db8a4b876fd56fc3.patch"; - sha256 = "sha256-FbYkP/WFmbfQmxArkHgushgVgY0XSypbK8Z5ivQK8k4="; - }) ]; - env = (attrs.env or { }) // { - NIX_CFLAGS_COMPILE = attrs.env.NIX_CFLAGS_COMPILE + " -w"; - }; + Rhisat2 = old.Rhisat2.overrideAttrs (attrs: { + enableParallelBuilding = false; }); s2 = old.s2.overrideAttrs (attrs: { @@ -1335,6 +1290,14 @@ let ]; }); + covidsymptom = old.covidsymptom.overrideAttrs (attrs: { + preConfigure = "rm R/covidsymptomdata.R"; + }); + + cubature = old.cubature.overrideAttrs (attrs: { + enableParallelBuilding = false; + }); + RVowpalWabbit = old.RVowpalWabbit.overrideAttrs (attrs: { configureFlags = [ "--with-boost=${pkgs.boost.dev}" "--with-boost-libdir=${pkgs.boost.out}/lib" @@ -1372,10 +1335,6 @@ let PKG_LIBS = "-L${pkgs.blas}/lib -lblas -L${pkgs.lapack}/lib -llapack"; }); - spMC = old.spMC.overrideAttrs (attrs: { - patches = [ ./patches/spMC.patch ]; - }); - FLAMES = old.FLAMES.overrideAttrs (attrs: { patches = [ ./patches/FLAMES.patch ]; }); @@ -1457,7 +1416,7 @@ let }); rgoslin = old.rgoslin.overrideAttrs (attrs: { - patches = [ ./patches/rgoslin.patch ]; + enableParallelBuilding = false; }); rpanel = old.rpanel.overrideAttrs (attrs: { @@ -1467,6 +1426,16 @@ let TCLLIBPATH = "${pkgs.bwidget}/lib/bwidget${pkgs.bwidget.version}"; }); + networkscaleup = old.networkscaleup.overrideAttrs (attrs: { + env = (attrs.env or { }) // { + # needed to avoid "log limit exceeded" on Hydra + NIX_CFLAGS_COMPILE = attrs.env.NIX_CFLAGS_COMPILE + " -Wno-ignored-attributes"; + }; + + # consumes a lot of resources in parallel + enableParallelBuilding = false; + }); + RPostgres = old.RPostgres.overrideAttrs (attrs: { preConfigure = '' export INCLUDE_DIR=${pkgs.postgresql}/include @@ -1497,6 +1466,16 @@ let ''; }); + FlexReg = old.FlexReg.overrideAttrs (attrs: { + env = (attrs.env or { }) // { + # needed to avoid "log limit exceeded" on Hydra + NIX_CFLAGS_COMPILE = attrs.env.NIX_CFLAGS_COMPILE + " -Wno-ignored-attributes"; + }; + + # consumes a lot of resources in parallel + enableParallelBuilding = false; + }); + geojsonio = old.geojsonio.overrideAttrs (attrs: { buildInputs = [ cacert ] ++ attrs.buildInputs; }); @@ -1538,6 +1517,18 @@ let ''; }); + nearfar = let + angrist = fetchurl { + url = "https://raw.githubusercontent.com/joerigdon/nearfar/master/angrist.csv"; + hash = "sha256-lb+HMHnRGonc26merFGB0B7Vk1Lk+sIJlay+JtQC8m4="; + }; + in old.nearfar.overrideAttrs (attrs: { + postPatch = '' + substituteInPlace "R/nearfar.R" --replace-fail \ + 'url("https://raw.githubusercontent.com/joerigdon/nearfar/master/angrist.csv")' '"${angrist}"' + ''; + }); + rstan = old.rstan.overrideAttrs (attrs: { env = (attrs.env or { }) // { NIX_CFLAGS_COMPILE = attrs.env.NIX_CFLAGS_COMPILE + " -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION"; @@ -1647,6 +1638,15 @@ let hardeningDisable = [ "format" ]; }); + Rbwa = old.Rbwa.overrideAttrs (attrs: { + # Parallel build cleans up *.o before they can be packed in a library + postPatch = '' + substituteInPlace src/Makefile --replace-fail \ + "all:\$(PROG) ../inst/bwa clean" \ + "all:\$(PROG) ../inst/bwa" \ + ''; + }); + ROracle = old.ROracle.overrideAttrs (attrs: { configureFlags = [ "--with-oci-lib=${pkgs.oracle-instantclient.lib}/lib" @@ -1710,14 +1710,37 @@ let postPatch = "patchShebangs configure"; }); + SharedObject = old.SharedObject.overrideAttrs (attrs: { + # backport PR resolving build issues: https://github.com/Jiefei-Wang/SharedObject/pull/17 + patches = let inherit (pkgs) fetchpatch; in [ + (fetchpatch { + url = "https://github.com/Jiefei-Wang/SharedObject/pull/17/commits/50c4b2964649d7f5a14d843bd7089ab62650fcd3.patch"; + sha256 = "sha256-zn535IeOYRvyQ2yxgoGEq2wccrl9xdu9nREmy7sV+PQ="; + }) + (fetchpatch { + url = "https://github.com/Jiefei-Wang/SharedObject/pull/17/commits/bf096a39858e9210cbe246d4b136905d4cfbfaf4.patch"; + sha256 = "sha256-Z+BZOkFnLgIBiVuPsAHp7bMXzADcvuHV4hILdmLvd+k="; + }) + ]; + }); + httr2 = old.httr2.overrideAttrs (attrs: { preConfigure = "patchShebangs configure"; }); + dbarts = old.dbarts.override { platforms = lib.platforms.x86_64 ++ lib.platforms.x86; }; + geomorph = old.geomorph.overrideAttrs (attrs: { RGL_USE_NULL = "true"; }); + gpuMagic = old.gpuMagic.overrideAttrs (_: { + hardeningDisable = ["format"]; + }); + + Rdisop = old.Rdisop.overrideAttrs (_: { + hardeningDisable = ["format"]; + }); opencv = let opencvGtk = pkgs.opencv.override (old : { enableGtk2 = true; }); @@ -1763,6 +1786,10 @@ let ''; }); + oligo = old.oligo.overrideAttrs (_: { + hardeningDisable = ["format"]; + }); + tesseract = old.tesseract.overrideAttrs (_: { preConfigure = '' substituteInPlace configure \ diff --git a/pkgs/development/r-modules/generate-r-packages.R b/pkgs/development/r-modules/generate-r-packages.R index 2395329a645ac..af2678b03105f 100755 --- a/pkgs/development/r-modules/generate-r-packages.R +++ b/pkgs/development/r-modules/generate-r-packages.R @@ -12,9 +12,9 @@ if ("release" %in% biocVersion$BiocStatus) { biocVersion <- max(as.numeric(as.character(biocVersion$Bioc))) } -mirrorUrls <- list( bioc=paste0("http://bioconductor.statistik.tu-dortmund.de/packages/", biocVersion, "/bioc/src/contrib/") - , "bioc-annotation"=paste0("http://bioconductor.statistik.tu-dortmund.de/packages/", biocVersion, "/data/annotation/src/contrib/") - , "bioc-experiment"=paste0("http://bioconductor.statistik.tu-dortmund.de/packages/", biocVersion, "/data/experiment/src/contrib/") +mirrorUrls <- list( bioc=paste0("http://bioconductor.org/packages/", biocVersion, "/bioc/src/contrib/") + , "bioc-annotation"=paste0("http://bioconductor.org/packages/", biocVersion, "/data/annotation/src/contrib/") + , "bioc-experiment"=paste0("http://bioconductor.org/packages/", biocVersion, "/data/experiment/src/contrib/") , cran="https://cran.r-project.org/src/contrib/" ) diff --git a/pkgs/development/r-modules/patches/rgoslin.patch b/pkgs/development/r-modules/patches/rgoslin.patch deleted file mode 100644 index 4e17b69b383f1..0000000000000 --- a/pkgs/development/r-modules/patches/rgoslin.patch +++ /dev/null @@ -1,12 +0,0 @@ -diff --git a/src/cppgoslin/cppgoslin/domain/StringFunctions.h b/src/cppgoslin/cppgoslin/domain/StringFunctions.h -index 70e8544..de5c040 100644 ---- a/src/cppgoslin/cppgoslin/domain/StringFunctions.h -+++ b/src/cppgoslin/cppgoslin/domain/StringFunctions.h -@@ -35,6 +35,7 @@ SOFTWARE. - #include "cppgoslin/domain/Element.h" - #include <algorithm> - #include <cctype> -+#include <cstdint> - - - #define contains_val(X, Y) ((X).find(Y) != (X).end()) diff --git a/pkgs/development/r-modules/patches/spMC.patch b/pkgs/development/r-modules/patches/spMC.patch deleted file mode 100644 index 04239d721c077..0000000000000 --- a/pkgs/development/r-modules/patches/spMC.patch +++ /dev/null @@ -1,8 +0,0 @@ -Only in spMC_orig: spMC -diff -ru -x '*~' spMC_orig/src/Makevars spMC/src/Makevars ---- spMC_orig/src/Makevars 2014-09-19 21:23:30.000000000 +0900 -+++ spMC/src/Makevars 2014-10-25 18:14:48.366954769 +0900 -@@ -1,2 +1,2 @@ - PKG_CFLAGS=$(SHLIB_OPENMP_CFLAGS) --PKG_LIBS=$(SHLIB_OPENMP_CFLAGS) $(BLAS_LIBS) $(LAPACK_LIBS) $(FLIBS) -+PKG_LIBS=$(SHLIB_OPENMP_CFLAGS) $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) diff --git a/pkgs/development/tools/analysis/checkov/default.nix b/pkgs/development/tools/analysis/checkov/default.nix index 3b925694c93ca..ed663df264380 100644 --- a/pkgs/development/tools/analysis/checkov/default.nix +++ b/pkgs/development/tools/analysis/checkov/default.nix @@ -6,14 +6,14 @@ python3.pkgs.buildPythonApplication rec { pname = "checkov"; - version = "3.2.140"; + version = "3.2.141"; pyproject = true; src = fetchFromGitHub { owner = "bridgecrewio"; repo = "checkov"; rev = "refs/tags/${version}"; - hash = "sha256-CqmXUz58eBMNrgfTDP/7M03R8vw9ys9/devRfFvWbBw="; + hash = "sha256-1EKqqKm0QB9tS5uaS7xMPoK/KDWRkJH1uW7yGiHLbNU="; }; patches = [ ./flake8-compat-5.x.patch ]; diff --git a/pkgs/development/tools/analysis/codeql/default.nix b/pkgs/development/tools/analysis/codeql/default.nix index 2bbd0135d615a..fa5881a1cb0c2 100644 --- a/pkgs/development/tools/analysis/codeql/default.nix +++ b/pkgs/development/tools/analysis/codeql/default.nix @@ -2,7 +2,7 @@ stdenv.mkDerivation rec { pname = "codeql"; - version = "2.17.4"; + version = "2.17.5"; dontConfigure = true; dontBuild = true; @@ -10,7 +10,7 @@ stdenv.mkDerivation rec { src = fetchzip { url = "https://github.com/github/codeql-cli-binaries/releases/download/v${version}/codeql.zip"; - hash = "sha256-4BfIu81e/XR23Kp8+b6/KRbuji2Od53a1urcyjXX1q8="; + hash = "sha256-Ay+8NOYq1sBIDhCoju2/L8Ghegmxz5NmtpBLb0hqH/E="; }; nativeBuildInputs = [ diff --git a/pkgs/development/tools/analysis/uefi-firmware-parser/default.nix b/pkgs/development/tools/analysis/uefi-firmware-parser/default.nix deleted file mode 100644 index 9981ac8b0388f..0000000000000 --- a/pkgs/development/tools/analysis/uefi-firmware-parser/default.nix +++ /dev/null @@ -1,31 +0,0 @@ -{ lib, python3, fetchFromGitHub }: - -with python3.pkgs; - -buildPythonApplication rec { - pname = "uefi-firmware-parser"; - version = "1.8"; - - # Version 1.8 is not published on pypi - src = fetchFromGitHub { - owner = "theopolis"; - repo = "uefi-firmware-parser"; - rev = "v${version}"; - sha256 = "1yn9vi91j1yxkn0icdnjhgl0qrqqkzyhccj39af4f19q1gdw995l"; - }; - - meta = with lib; { - homepage = "https://github.com/theopolis/uefi-firmware-parser/"; - description = "Parse BIOS/Intel ME/UEFI firmware related structures: Volumes, FileSystems, Files, etc"; - mainProgram = "uefi-firmware-parser"; - # MIT + license headers in some files - license = with licenses; [ - mit - zlib # uefi_firmware/me.py - bsd2 # uefi_firmware/compression/Tiano/**/* - publicDomain # uefi_firmware/compression/LZMA/SDK/C/* - ]; - platforms = [ "x86_64-linux" "aarch64-linux" ]; - maintainers = [ maintainers.samueldr ]; - }; -} diff --git a/pkgs/development/tools/buildkit/default.nix b/pkgs/development/tools/buildkit/default.nix index 436a8c9501bf8..89a1ea0e09867 100644 --- a/pkgs/development/tools/buildkit/default.nix +++ b/pkgs/development/tools/buildkit/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "buildkit"; - version = "0.14.0"; + version = "0.14.1"; src = fetchFromGitHub { owner = "moby"; repo = "buildkit"; rev = "v${version}"; - hash = "sha256-41e/S3TzDAJuvopd5JFMKvdDOmHwnwF+4wrdOvifyoU="; + hash = "sha256-I0r9ovydRmGdg5EB+b69Iv2BuvVy82Ydz40UWmStumc="; }; vendorHash = null; diff --git a/pkgs/development/tools/cfn-nag/default.nix b/pkgs/development/tools/cfn-nag/default.nix index 4e25f052401d7..8438607102c36 100644 --- a/pkgs/development/tools/cfn-nag/default.nix +++ b/pkgs/development/tools/cfn-nag/default.nix @@ -13,7 +13,7 @@ bundlerEnv { description = "Linting tool for CloudFormation templates"; homepage = "https://github.com/stelligent/cfn_nag"; license = licenses.mit; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; platforms = platforms.unix; }; } diff --git a/pkgs/development/tools/continuous-integration/gitlab-runner/default.nix b/pkgs/development/tools/continuous-integration/gitlab-runner/default.nix index fbce84a679125..6f6a8fd68259c 100644 --- a/pkgs/development/tools/continuous-integration/gitlab-runner/default.nix +++ b/pkgs/development/tools/continuous-integration/gitlab-runner/default.nix @@ -1,7 +1,7 @@ { lib, buildGoModule, fetchFromGitLab, bash }: let - version = "17.0.0"; + version = "17.1.0"; in buildGoModule rec { inherit version; @@ -17,13 +17,13 @@ buildGoModule rec { # For patchShebangs buildInputs = [ bash ]; - vendorHash = "sha256-ms93Ea2Un/F9TDmNttSxi/CtZGsOnmptCf/hjtgCMB0="; + vendorHash = "sha256-Rk5/h8wqVwGzovtAjjNkvexG71Dj36mFxU8OsLJzpUo="; src = fetchFromGitLab { owner = "gitlab-org"; repo = "gitlab-runner"; rev = "v${version}"; - sha256 = "sha256-u9yA9v2UojBTDElfZhi8k9D1of0vIj3c14ZFmwa+yj4="; + sha256 = "sha256-mRL62PIAkPK0aLA7uYpGlUvaJfbD354RDOD4P8MLzx8="; }; patches = [ diff --git a/pkgs/development/tools/continuous-integration/jenkins/default.nix b/pkgs/development/tools/continuous-integration/jenkins/default.nix index c657c7bcf8aac..875d065d02935 100644 --- a/pkgs/development/tools/continuous-integration/jenkins/default.nix +++ b/pkgs/development/tools/continuous-integration/jenkins/default.nix @@ -4,11 +4,11 @@ stdenv.mkDerivation rec { pname = "jenkins"; - version = "2.440.3"; + version = "2.452.2"; src = fetchurl { url = "https://get.jenkins.io/war-stable/${version}/jenkins.war"; - hash = "sha256-+NR9v9WTWVUa6tg4j6StcAXtp8R84hxmTJlhDKBK42c="; + hash = "sha256-Ng78hDjbmkuiB3KYHUJXz+aDe/DD+4yOmyJT2M5rozk="; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/development/tools/djhtml/default.nix b/pkgs/development/tools/djhtml/default.nix index 4e4342f36fb67..5d654b58a1ef6 100644 --- a/pkgs/development/tools/djhtml/default.nix +++ b/pkgs/development/tools/djhtml/default.nix @@ -23,6 +23,6 @@ buildPythonApplication rec { homepage = "https://github.com/rtts/djhtml"; description = "Django/Jinja template indenter"; license = licenses.gpl3Plus; - maintainers = with maintainers; [ thubrecht ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/development/tools/dprint/default.nix b/pkgs/development/tools/dprint/default.nix index af428be72e8d7..e2d35dd403d55 100644 --- a/pkgs/development/tools/dprint/default.nix +++ b/pkgs/development/tools/dprint/default.nix @@ -2,14 +2,14 @@ rustPlatform.buildRustPackage rec { pname = "dprint"; - version = "0.46.2"; + version = "0.46.3"; src = fetchCrate { inherit pname version; - sha256 = "sha256-P7q2WLTGydC652N4jvTiF7hm4HRmSWnRv9+AuxRoC5Y="; + sha256 = "sha256-IyhKxCqLyboEZINalI6bd///sUxWvmWlQVrzMA2sNdU="; }; - cargoHash = "sha256-xmMFqqADIwIII+arW9gZyf95yXOkBMDRDOaG0Nay7hQ="; + cargoHash = "sha256-46t6Y2UuRCAnvOhEPLgYN+fHHtJYxuflRT3DClLTDQk="; buildInputs = lib.optionals stdenv.isDarwin [ CoreFoundation Security ]; diff --git a/pkgs/development/tools/ejs/default.nix b/pkgs/development/tools/ejs/default.nix index 5392a9c137a2c..b9242836b62be 100644 --- a/pkgs/development/tools/ejs/default.nix +++ b/pkgs/development/tools/ejs/default.nix @@ -29,6 +29,6 @@ buildNpmPackage rec { homepage = "http://ejs.co"; license = lib.licenses.asl20; mainProgram = "ejs"; - maintainers = with lib.maintainers; [ wolfangaukang ]; + maintainers = [ ]; }; } diff --git a/pkgs/development/tools/faas-cli/default.nix b/pkgs/development/tools/faas-cli/default.nix index a5b0747e07cc4..66f45af3a5ba4 100644 --- a/pkgs/development/tools/faas-cli/default.nix +++ b/pkgs/development/tools/faas-cli/default.nix @@ -18,13 +18,13 @@ let in buildGoModule rec { pname = "faas-cli"; - version = "0.16.29"; + version = "0.16.30"; src = fetchFromGitHub { owner = "openfaas"; repo = "faas-cli"; rev = version; - sha256 = "sha256-TKrn4ouRcQS1FpySpQCdK7EMjlE+qwa3e/Ze+TAdA7s="; + sha256 = "sha256-tk0ZptDT4qxJLv5sMAh1oF8yXiTsKbv3UiQM8f4ywMA="; }; vendorHash = null; diff --git a/pkgs/development/tools/firebase-tools/default.nix b/pkgs/development/tools/firebase-tools/default.nix index ed1a09e2916a9..4218896faf13d 100644 --- a/pkgs/development/tools/firebase-tools/default.nix +++ b/pkgs/development/tools/firebase-tools/default.nix @@ -8,16 +8,16 @@ buildNpmPackage rec { pname = "firebase-tools"; - version = "13.11.2"; + version = "13.11.3"; src = fetchFromGitHub { owner = "firebase"; repo = "firebase-tools"; rev = "v${version}"; - hash = "sha256-UkRkl9p8ABIr5kCtOW8nN6wpTOj56jdapQdenywd1to="; + hash = "sha256-JgmiWcWGGJOv9P0x/WSlkVhmcNSIX12jKZuZBSHxqkg="; }; - npmDepsHash = "sha256-NnO7g5TBnaFfv6s+95qjkVA0iSVFv1EQnVn1OgxeEeU="; + npmDepsHash = "sha256-dDIw8R2126HLqhU+8dq7zroJ7YHHiV6s8yTSrmtgURM="; postPatch = '' ln -s npm-shrinkwrap.json package-lock.json diff --git a/pkgs/development/tools/go-minimock/default.nix b/pkgs/development/tools/go-minimock/default.nix index a972f069d31a3..c3a47019486ab 100644 --- a/pkgs/development/tools/go-minimock/default.nix +++ b/pkgs/development/tools/go-minimock/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "go-minimock"; - version = "3.3.12"; + version = "3.3.13"; src = fetchFromGitHub { owner = "gojuno"; repo = "minimock"; rev = "v${version}"; - hash = "sha256-9iokhXkwmISjg8pOy11bax0KEfro2lpGLI9fbz2tpiY="; + hash = "sha256-YLGZJMBe5wKI9RccJ1ps48A3ZiPWMrzjZH4Fpy8K9yM="; }; ldflags = [ diff --git a/pkgs/development/tools/hclfmt/default.nix b/pkgs/development/tools/hclfmt/default.nix index 3fd10b5e082a6..730d44272b325 100644 --- a/pkgs/development/tools/hclfmt/default.nix +++ b/pkgs/development/tools/hclfmt/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "hclfmt"; - version = "2.20.1"; + version = "2.21.0"; src = fetchFromGitHub { owner = "hashicorp"; repo = "hcl"; rev = "v${version}"; - hash = "sha256-+4K6k32azx/66eag9c6lUN8TUJ1ICx4Q8zpnTJWqgQ0="; + hash = "sha256-izbctn5OqaDunQLovgCGTgqMzC9i227zXlXUNCEExvA="; }; - vendorHash = "sha256-L5OabeDUXbrwFOgWRhi9FPTWK+xbL54ZM7cYhS15Jis="; + vendorHash = "sha256-F2i7ph9GL9Xo43da6jHPn9P9FdWC6eSgqCyHPBxdFJY="; # The code repository includes other tools which are not useful. Only build # hclfmt. diff --git a/pkgs/development/tools/jbang/default.nix b/pkgs/development/tools/jbang/default.nix index a21d26def2c30..e76caa4c58d8b 100644 --- a/pkgs/development/tools/jbang/default.nix +++ b/pkgs/development/tools/jbang/default.nix @@ -17,7 +17,7 @@ stdenv.mkDerivation rec { cp -r . $out wrapProgram $out/bin/jbang \ --set JAVA_HOME ${jdk} \ - --set PATH ${lib.makeBinPath [ coreutils jdk curl ]} + --set PATH ${lib.makeBinPath [ (placeholder "out") coreutils jdk curl ]} runHook postInstall ''; diff --git a/pkgs/development/tools/jql/default.nix b/pkgs/development/tools/jql/default.nix index 42e29ee653eb1..82d25feaa4fb2 100644 --- a/pkgs/development/tools/jql/default.nix +++ b/pkgs/development/tools/jql/default.nix @@ -5,16 +5,16 @@ rustPlatform.buildRustPackage rec { pname = "jql"; - version = "7.1.11"; + version = "7.1.12"; src = fetchFromGitHub { owner = "yamafaktory"; repo = pname; rev = "jql-v${version}"; - hash = "sha256-gXxYN6WIbQNhFTCcrT6Kioo0FjbJM5gxHTjAK71LMjs="; + hash = "sha256-k8BHmZe7cXUJV6OJlcFdabFiZwg4aEGnpyv5xeM3pH4="; }; - cargoHash = "sha256-bz8iAgdRxTQyZJsTVVwIpiC/ktas4Sv/S7PCqQ+/HDY="; + cargoHash = "sha256-G/t9R9WObZNj5AsF0rjNuTf10snIhJE/LFUvXk3KoBQ="; meta = with lib; { description = "JSON Query Language CLI tool built with Rust"; diff --git a/pkgs/development/tools/language-servers/fortls/default.nix b/pkgs/development/tools/language-servers/fortls/default.nix index 56172b8125990..f7fef66761024 100644 --- a/pkgs/development/tools/language-servers/fortls/default.nix +++ b/pkgs/development/tools/language-servers/fortls/default.nix @@ -8,13 +8,13 @@ buildPythonApplication rec { pname = "fortls"; - version = "3.1.1"; + version = "3.1.2"; src = fetchFromGitHub { owner = "fortran-lang"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-7imZLSE7USFXmv/V3olE698J8Q8a7cJt15nBKkPZJoU="; + hash = "sha256-mOYPtysPj+JczRPTeM1DUckAH0XC9cO1ssP8pviYa0E="; }; nativeBuildInputs = [ setuptools-scm ]; diff --git a/pkgs/development/tools/language-servers/gopls/default.nix b/pkgs/development/tools/language-servers/gopls/default.nix index b489f0ba8f6f6..9c1203486e797 100644 --- a/pkgs/development/tools/language-servers/gopls/default.nix +++ b/pkgs/development/tools/language-servers/gopls/default.nix @@ -2,17 +2,17 @@ buildGoModule rec { pname = "gopls"; - version = "0.15.3"; + version = "0.16.0"; src = fetchFromGitHub { owner = "golang"; repo = "tools"; rev = "gopls/v${version}"; - hash = "sha256-JUqw2qJFxiuZyXgrmirrOuwG9mtcW1e1+SS0CaZY8VA="; + hash = "sha256-X5XBYTD+DIbHFBMWkLGosZUORexYt83mML/akUzrnFk="; }; modRoot = "gopls"; - vendorHash = "sha256-j2jMkVvsZ6UjcziSKtxGfwr7eRiTlEPW7LQCaEIa3I0="; + vendorHash = "sha256-XH3kSfnlwmbOLkWJCjKmU1ghCkarn23M0q0vJQHkCe0="; # https://github.com/golang/tools/blob/9ed98faa/gopls/main.go#L27-L30 ldflags = [ "-X main.version=v${version}" ]; diff --git a/pkgs/development/tools/language-servers/nixd/default.nix b/pkgs/development/tools/language-servers/nixd/default.nix index 8d2c5c7c2b240..6803b0761c1b1 100644 --- a/pkgs/development/tools/language-servers/nixd/default.nix +++ b/pkgs/development/tools/language-servers/nixd/default.nix @@ -20,13 +20,13 @@ let common = rec { - version = "2.2.0"; + version = "2.2.1"; src = fetchFromGitHub { owner = "nix-community"; repo = "nixd"; rev = version; - hash = "sha256-/8Ty1I130vWFidedt+WEaaFHS/zMFVu9vpq4Z3EBjGw="; + hash = "sha256-Y5MB3BQBRkSe+10enlric1GTmJCN36clbOSos6fzoRM="; }; nativeBuildInputs = [ diff --git a/pkgs/development/tools/language-servers/perlnavigator/default.nix b/pkgs/development/tools/language-servers/perlnavigator/default.nix index adaa30747f6ef..a7d243888587c 100644 --- a/pkgs/development/tools/language-servers/perlnavigator/default.nix +++ b/pkgs/development/tools/language-servers/perlnavigator/default.nix @@ -75,6 +75,6 @@ in buildNpmPackage rec { homepage = "https://github.com/bscan/PerlNavigator/tree/main/server"; license = lib.licenses.mit; mainProgram = "perlnavigator"; - maintainers = with lib.maintainers; [ wolfangaukang ]; + maintainers = [ ]; }; } diff --git a/pkgs/development/tools/language-servers/yaml-language-server/default.nix b/pkgs/development/tools/language-servers/yaml-language-server/default.nix index 080b39dcf46e5..90aae9d0d82bf 100644 --- a/pkgs/development/tools/language-servers/yaml-language-server/default.nix +++ b/pkgs/development/tools/language-servers/yaml-language-server/default.nix @@ -6,13 +6,13 @@ mkYarnPackage rec { pname = "yaml-language-server"; - version = "1.14.0"; + version = "1.15.0"; src = fetchFromGitHub { owner = "redhat-developer"; repo = "yaml-language-server"; rev = version; - hash = "sha256-DS5kMw/x8hP2MzxHdHXnBqqBGLq21NiZBb5ApjEe/ts="; + hash = "sha256-Y3Q/y9UIiy7US8Jl4vxT0Pfw8h3hiXK+Cu9TEQHyAaA="; }; packageJSON = ./package.json; @@ -36,6 +36,6 @@ mkYarnPackage rec { homepage = "https://github.com/redhat-developer/yaml-language-server"; license = lib.licenses.mit; mainProgram = "yaml-language-server"; - maintainers = with lib.maintainers; [ wolfangaukang ]; + maintainers = [ ]; }; } diff --git a/pkgs/development/tools/language-servers/yaml-language-server/package.json b/pkgs/development/tools/language-servers/yaml-language-server/package.json index c270da41f4df5..62be0e23edba0 100644 --- a/pkgs/development/tools/language-servers/yaml-language-server/package.json +++ b/pkgs/development/tools/language-servers/yaml-language-server/package.json @@ -1,7 +1,7 @@ { "name": "yaml-language-server", "description": "YAML language server", - "version": "1.14.0", + "version": "1.15.0", "author": "Gorkem Ercan (Red Hat)", "license": "MIT", "contributors": [ diff --git a/pkgs/development/tools/license_finder/default.nix b/pkgs/development/tools/license_finder/default.nix index 954e2dcd5183d..c5ac088555658 100644 --- a/pkgs/development/tools/license_finder/default.nix +++ b/pkgs/development/tools/license_finder/default.nix @@ -13,7 +13,7 @@ bundlerEnv { description = "Find licenses for your project's dependencies"; homepage = "https://github.com/pivotal/licensefinder"; license = licenses.mit; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; platforms = platforms.unix; }; } diff --git a/pkgs/development/tools/melange/default.nix b/pkgs/development/tools/melange/default.nix index 8d39043f842f4..87fab7031e229 100644 --- a/pkgs/development/tools/melange/default.nix +++ b/pkgs/development/tools/melange/default.nix @@ -6,13 +6,13 @@ buildGoModule rec { pname = "melange"; - version = "0.8.6"; + version = "0.9.0"; src = fetchFromGitHub { owner = "chainguard-dev"; repo = pname; rev = "v${version}"; - hash = "sha256-/ZroyTrRHXflhMEBd7zvuHFpJTmY7g+5AZ1ZPLQjkiA="; + hash = "sha256-31v9xANoots+tAY9XErouoFDcnLXYaChRwRmZ9vdqCs="; # populate values that require us to use git. By doing this in postFetch we # can delete .git afterwards and maintain better reproducibility of the src. leaveDotGit = true; @@ -25,7 +25,7 @@ buildGoModule rec { ''; }; - vendorHash = "sha256-aiJ70BIiLM5ZzIRDqGkvsLg5I8EVpQtecrVP2/omhRA="; + vendorHash = "sha256-jliPUJ1lSoh6QszOvz9aBs2KAJwL19dRKCVTpDLgg2s="; subPackages = [ "." ]; diff --git a/pkgs/development/tools/misc/arcanist/default.nix b/pkgs/development/tools/misc/arcanist/default.nix deleted file mode 100644 index 06c0f700ffe8c..0000000000000 --- a/pkgs/development/tools/misc/arcanist/default.nix +++ /dev/null @@ -1,88 +0,0 @@ -{ bison -, cacert -, fetchFromGitHub -, flex -, php -, lib, stdenv -, installShellFiles -, which -, python3 -}: - -# Make a custom wrapper. If `wrapProgram` is used, arcanist thinks .arc-wrapped is being -# invoked and complains about it being an unknown toolset. We could use `makeWrapper`, but -# then we’d need to still craft a script that does the `php libexec/arcanist/bin/...` dance -# anyway... So just do everything at once. -let makeArcWrapper = toolset: '' - cat << WRAPPER > $out/bin/${toolset} - #!$shell -e - export PATH='${php}/bin:${which}/bin'\''${PATH:+':'}\$PATH - exec ${php}/bin/php $out/libexec/arcanist/bin/${toolset} "\$@" - WRAPPER - chmod +x $out/bin/${toolset} -''; - -in -stdenv.mkDerivation { - pname = "arcanist"; - version = "20230530"; - - src = fetchFromGitHub { - owner = "phacility"; - repo = "arcanist"; - rev = "e50d1bc4eabac9c37e3220e9f3fb8e37ae20b957"; - hash = "sha256-u+HRsaCuAAyLrEihrZtLrdZ6NTVjPshieJATK3t5Fo4="; - }; - - patches = [ - ./dont-require-python3-in-path.patch - ./shellcomplete-strlen-null.patch - ]; - - buildInputs = [ php python3 ]; - - nativeBuildInputs = [ bison flex installShellFiles ]; - - postPatch = lib.optionalString stdenv.isAarch64 '' - substituteInPlace support/xhpast/Makefile \ - --replace "-minline-all-stringops" "" - ''; - - buildPhase = '' - runHook preBuild - make cleanall -C support/xhpast $makeFlags "''${makeFlagsArray[@]}" -j $NIX_BUILD_CORES - make xhpast -C support/xhpast $makeFlags "''${makeFlagsArray[@]}" -j $NIX_BUILD_CORES - runHook postBuild - ''; - - installPhase = '' - runHook preInstall - mkdir -p $out/bin $out/libexec - make install -C support/xhpast $makeFlags "''${makeFlagsArray[@]}" -j $NIX_BUILD_CORES - make cleanall -C support/xhpast $makeFlags "''${makeFlagsArray[@]}" -j $NIX_BUILD_CORES - cp -R . $out/libexec/arcanist - ln -sf ${cacert}/etc/ssl/certs/ca-bundle.crt $out/libexec/arcanist/resources/ssl/default.pem - - ${makeArcWrapper "arc"} - ${makeArcWrapper "phage"} - - $out/bin/arc shell-complete --generate -- - installShellCompletion --cmd arc --bash $out/libexec/arcanist/support/shell/rules/bash-rules.sh - installShellCompletion --cmd phage --bash $out/libexec/arcanist/support/shell/rules/bash-rules.sh - runHook postInstall - ''; - - doInstallCheck = true; - installCheckPhase = '' - $out/bin/arc help diff -- > /dev/null - $out/bin/phage help alias -- > /dev/null - ''; - - meta = { - description = "Command line interface to Phabricator"; - homepage = "https://www.phacility.com/"; - license = lib.licenses.asl20; - platforms = lib.platforms.unix; - maintainers = [ lib.maintainers.thoughtpolice ]; - }; -} diff --git a/pkgs/development/tools/misc/arcanist/dont-require-python3-in-path.patch b/pkgs/development/tools/misc/arcanist/dont-require-python3-in-path.patch deleted file mode 100644 index 5c127491bb844..0000000000000 --- a/pkgs/development/tools/misc/arcanist/dont-require-python3-in-path.patch +++ /dev/null @@ -1,26 +0,0 @@ -Don't require python3 in PATH - -Once packaged, the arcanoid.py script has an absolute path shebang to -python3, so there is no need to also require python3 in PATH. - -This prevents leaking in a python3 in PATH in the environment which arc -runs linters etc. - -Author: bjorn.forsman@gmail.com -diff -uNr arcanist.orig/src/workflow/ArcanistAnoidWorkflow.php arcanist.new/src/workflow/ArcanistAnoidWorkflow.php ---- arcanist.orig/src/workflow/ArcanistAnoidWorkflow.php 2022-03-31 13:23:30.865095192 +0200 -+++ arcanist.new/src/workflow/ArcanistAnoidWorkflow.php 2022-04-01 12:19:15.644159639 +0200 -@@ -24,13 +24,6 @@ - } - - public function runWorkflow() { -- if (!Filesystem::binaryExists('python3')) { -- throw new PhutilArgumentUsageException( -- pht( -- 'The "arc anoid" workflow requires "python3" to be available '. -- 'in your $PATH.')); -- } -- - $support_dir = phutil_get_library_root('arcanist'); - $support_dir = dirname($support_dir); - $support_dir = $support_dir.'/support/'; diff --git a/pkgs/development/tools/misc/arcanist/shellcomplete-strlen-null.patch b/pkgs/development/tools/misc/arcanist/shellcomplete-strlen-null.patch deleted file mode 100644 index 6911ce074e0cd..0000000000000 --- a/pkgs/development/tools/misc/arcanist/shellcomplete-strlen-null.patch +++ /dev/null @@ -1,13 +0,0 @@ -diff --git a/src/toolset/workflow/ArcanistShellCompleteWorkflow.php b/src/toolset/workflow/ArcanistShellCompleteWorkflow.php -index 9c2fcf9a..307231c8 100644 ---- a/src/toolset/workflow/ArcanistShellCompleteWorkflow.php -+++ b/src/toolset/workflow/ArcanistShellCompleteWorkflow.php -@@ -92,7 +92,7 @@ EOTEXT - $argv = $this->getArgument('argv'); - - $is_generate = $this->getArgument('generate'); -- $is_shell = (bool)strlen($this->getArgument('shell')); -+ $is_shell = phutil_nonempty_string($this->getArgument('shell')); - $is_current = $this->getArgument('current'); - - if ($argv) { diff --git a/pkgs/development/tools/misc/astyle/default.nix b/pkgs/development/tools/misc/astyle/default.nix index ca714b393ee12..139233ef1f761 100644 --- a/pkgs/development/tools/misc/astyle/default.nix +++ b/pkgs/development/tools/misc/astyle/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "astyle"; - version = "3.4.16"; + version = "3.5"; src = fetchurl { url = "mirror://sourceforge/${pname}/${pname}-${version}.tar.bz2"; - hash = "sha256-y3YENPfkYk1e6yd2rDNOeeARGb6kGfyYbt0sJNk4A2Q="; + hash = "sha256-3vwct7+oY77EcOg2wldDmhGZyiyLE6ZSoyf9eMj1kjw="; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/tools/misc/hydra/unstable.nix b/pkgs/development/tools/misc/hydra/unstable.nix index 972f137034415..ce9a45b1f049b 100644 --- a/pkgs/development/tools/misc/hydra/unstable.nix +++ b/pkgs/development/tools/misc/hydra/unstable.nix @@ -256,6 +256,6 @@ stdenv.mkDerivation rec { homepage = "https://nixos.org/hydra"; license = licenses.gpl3; platforms = platforms.linux; - maintainers = with maintainers; [ lheckemann mindavi ] ++ teams.helsinki-systems.members; + maintainers = with maintainers; [ mindavi ] ++ teams.helsinki-systems.members; }; } diff --git a/pkgs/development/tools/misc/typical/default.nix b/pkgs/development/tools/misc/typical/default.nix index b2526370aadaa..9eb303065ab8a 100644 --- a/pkgs/development/tools/misc/typical/default.nix +++ b/pkgs/development/tools/misc/typical/default.nix @@ -7,16 +7,16 @@ rustPlatform.buildRustPackage rec { pname = "typical"; - version = "0.10.0"; + version = "0.12.1"; src = fetchFromGitHub { owner = "stepchowfun"; repo = "typical"; rev = "v${version}"; - hash = "sha256-Ngeam9sdSov25mHR8TNrxaoqf2tRc+zMUkt00u8DSiQ="; + hash = "sha256-y7PWTzD9+rkC4wZYhecmDTa3AoWl4Tgh7QXbSK4Qq5Q="; }; - cargoHash = "sha256-v+1M+rgYgfA1yJIHcEGhdxyiZRNffZc27rSlGLDHjVA="; + cargoHash = "sha256-U6dRk8fqhxxMbu283jvkjGMjbIOYqy9jN64M2VmdZ/g="; nativeBuildInputs = [ installShellFiles diff --git a/pkgs/development/tools/ocaml/dune/3.nix b/pkgs/development/tools/ocaml/dune/3.nix index 58a9cd791af92..f2c00e16c9e73 100644 --- a/pkgs/development/tools/ocaml/dune/3.nix +++ b/pkgs/development/tools/ocaml/dune/3.nix @@ -6,11 +6,11 @@ else stdenv.mkDerivation rec { pname = "dune"; - version = "3.15.3"; + version = "3.16.0"; src = fetchurl { url = "https://github.com/ocaml/dune/releases/download/${version}/dune-${version}.tbz"; - hash = "sha256-PCfHZ2QUBW8DaKcf3GcNKwpZiYCQx4obaCMJhOW+txM="; + hash = "sha256-VIHd55GMoxIeAsNNdDOfc0sy1Yg++4wbgFZHHnT5vaY="; }; nativeBuildInputs = [ ocaml findlib ]; diff --git a/pkgs/development/tools/operator-sdk/default.nix b/pkgs/development/tools/operator-sdk/default.nix index fa9379ab62ee7..b334654dd924e 100644 --- a/pkgs/development/tools/operator-sdk/default.nix +++ b/pkgs/development/tools/operator-sdk/default.nix @@ -7,16 +7,16 @@ buildGoModule rec { pname = "operator-sdk"; - version = "1.34.2"; + version = "1.35.0"; src = fetchFromGitHub { owner = "operator-framework"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-vVa1ljPRSHSo7bVqPkRt/jbuSlzLmnVaLnyreskwOrM="; + hash = "sha256-KalG1DLhvXEjNAOeP79BMYvI74j6nKnDkOYubIJ0Shs="; }; - vendorHash = "sha256-YspUrnSS6d8Ta8dmUjx9A5D/V5Bqm08DQJrRBaIGyQg="; + vendorHash = "sha256-TuDbQoC9at3yQikGTfsAKJ5kc/naqLqfHEwXLOv+12A="; nativeBuildInputs = [ makeWrapper diff --git a/pkgs/development/tools/pipenv/default.nix b/pkgs/development/tools/pipenv/default.nix index c8e4d0e200691..27386cc1d6902 100644 --- a/pkgs/development/tools/pipenv/default.nix +++ b/pkgs/development/tools/pipenv/default.nix @@ -24,14 +24,14 @@ let in buildPythonApplication rec { pname = "pipenv"; - version = "2023.2.4"; + version = "2023.10.24"; format = "pyproject"; src = fetchFromGitHub { owner = "pypa"; repo = "pipenv"; rev = "refs/tags/v${version}"; - hash = "sha256-jZOBu4mWyu8U6CGqtYgfcCCDSa0pGqoZEFnXl5IO+JY="; + hash = "sha256-b1EqCrgGygdG08zzastgcYGnXDKoEYNvm5xjDLzlAXo="; }; env.LC_ALL = "en_US.UTF-8"; @@ -47,7 +47,7 @@ in buildPythonApplication rec { # and to call setup.py. # It would use sys.executable, which in our case points to a python that # does not have the required dependencies. - substituteInPlace pipenv/core.py \ + substituteInPlace pipenv/utils/virtualenv.py \ --replace "sys.executable" "'${pythonEnv.interpreter}'" ''; diff --git a/pkgs/development/tools/rain/default.nix b/pkgs/development/tools/rain/default.nix index e68b3802a5c9b..37fa945dd95a8 100644 --- a/pkgs/development/tools/rain/default.nix +++ b/pkgs/development/tools/rain/default.nix @@ -7,16 +7,16 @@ buildGoModule rec { pname = "rain"; - version = "1.10.0"; + version = "1.11.0"; src = fetchFromGitHub { owner = "aws-cloudformation"; repo = pname; rev = "v${version}"; - sha256 = "sha256-2+bbTHblACG9yLBgdQ4P6PHXF06tLeVpsnuKCju8fV0="; + sha256 = "sha256-2W/Ytdnzb0+EAPsuN6LXX0eLQMOu3qetJKYvKzgB0jM="; }; - vendorHash = "sha256-YDY9Acp8bi0Pvjdjn1hTzChCVs5E1yximIrgyd7J/7w="; + vendorHash = "sha256-Hpggkx707IX5ZUBuynQukCShk0pp12YEJYOF3eEN+5I="; subPackages = [ "cmd/rain" ]; diff --git a/pkgs/development/tools/redisinsight/default.nix b/pkgs/development/tools/redisinsight/default.nix index c27cd9b47dfd2..4395bc7a040eb 100644 --- a/pkgs/development/tools/redisinsight/default.nix +++ b/pkgs/development/tools/redisinsight/default.nix @@ -163,7 +163,6 @@ stdenv.mkDerivation (finalAttrs: { homepage = "https://github.com/RedisInsight/RedisInsight"; license = lib.licenses.sspl; maintainers = with lib.maintainers; [ - gmemstr tomasajt ]; platforms = lib.platforms.linux; diff --git a/pkgs/development/tools/ruff/Cargo.lock b/pkgs/development/tools/ruff/Cargo.lock index 4f31226a36529..6d910ad0ab5ad 100644 --- a/pkgs/development/tools/ruff/Cargo.lock +++ b/pkgs/development/tools/ruff/Cargo.lock @@ -305,9 +305,9 @@ dependencies = [ [[package]] name = "clap" -version = "4.5.6" +version = "4.5.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a9689a29b593160de5bc4aacab7b5d54fb52231de70122626c178e6a368994c7" +checksum = "5db83dced34638ad474f39f250d7fea9598bdd239eaced1bdf45d597da0f433f" dependencies = [ "clap_builder", "clap_derive", @@ -315,9 +315,9 @@ dependencies = [ [[package]] name = "clap_builder" -version = "4.5.6" +version = "4.5.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2e5387378c84f6faa26890ebf9f0a92989f8873d4d380467bcd0d8d8620424df" +checksum = "f7e204572485eb3fbf28f871612191521df159bc3e15a9f5064c66dba3a8c05f" dependencies = [ "anstream", "anstyle", @@ -692,6 +692,17 @@ dependencies = [ ] [[package]] +name = "displaydoc" +version = "0.2.4" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "487585f4d0c6655fe74905e2504d8ad6908e4db67f744eb140876906c2f3175d" +dependencies = [ + "proc-macro2", + "quote", + "syn 2.0.66", +] + +[[package]] name = "drop_bomb" version = "0.1.5" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -967,6 +978,124 @@ dependencies = [ ] [[package]] +name = "icu_collections" +version = "1.5.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "db2fa452206ebee18c4b5c2274dbf1de17008e874b4dc4f0aea9d01ca79e4526" +dependencies = [ + "displaydoc", + "yoke", + "zerofrom", + "zerovec", +] + +[[package]] +name = "icu_locid" +version = "1.5.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "13acbb8371917fc971be86fc8057c41a64b521c184808a698c02acc242dbf637" +dependencies = [ + "displaydoc", + "litemap", + "tinystr", + "writeable", + "zerovec", +] + +[[package]] +name = "icu_locid_transform" +version = "1.5.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "01d11ac35de8e40fdeda00d9e1e9d92525f3f9d887cdd7aa81d727596788b54e" +dependencies = [ + "displaydoc", + "icu_locid", + "icu_locid_transform_data", + "icu_provider", + "tinystr", + "zerovec", +] + +[[package]] +name = "icu_locid_transform_data" +version = "1.5.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "fdc8ff3388f852bede6b579ad4e978ab004f139284d7b28715f773507b946f6e" + +[[package]] +name = "icu_normalizer" +version = "1.5.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "19ce3e0da2ec68599d193c93d088142efd7f9c5d6fc9b803774855747dc6a84f" +dependencies = [ + "displaydoc", + "icu_collections", + "icu_normalizer_data", + "icu_properties", + "icu_provider", + "smallvec", + "utf16_iter", + "utf8_iter", + "write16", + "zerovec", +] + +[[package]] +name = "icu_normalizer_data" +version = "1.5.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "f8cafbf7aa791e9b22bec55a167906f9e1215fd475cd22adfcf660e03e989516" + +[[package]] +name = "icu_properties" +version = "1.5.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "1f8ac670d7422d7f76b32e17a5db556510825b29ec9154f235977c9caba61036" +dependencies = [ + "displaydoc", + "icu_collections", + "icu_locid_transform", + "icu_properties_data", + "icu_provider", + "tinystr", + "zerovec", +] + +[[package]] +name = "icu_properties_data" +version = "1.5.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "67a8effbc3dd3e4ba1afa8ad918d5684b8868b3b26500753effea8d2eed19569" + +[[package]] +name = "icu_provider" +version = "1.5.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "6ed421c8a8ef78d3e2dbc98a973be2f3770cb42b606e3ab18d6237c4dfde68d9" +dependencies = [ + "displaydoc", + "icu_locid", + "icu_provider_macros", + "stable_deref_trait", + "tinystr", + "writeable", + "yoke", + "zerofrom", + "zerovec", +] + +[[package]] +name = "icu_provider_macros" +version = "1.5.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "1ec89e9337638ecdc08744df490b221a7399bf8d164eb52a665454e60e075ad6" +dependencies = [ + "proc-macro2", + "quote", + "syn 2.0.66", +] + +[[package]] name = "ident_case" version = "1.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -974,12 +1103,14 @@ checksum = "b9e0384b61958566e926dc50660321d12159025e767c18e043daf26b70104c39" [[package]] name = "idna" -version = "0.5.0" +version = "1.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "634d9b1461af396cad843f47fdba5597a4f9e6ddd4bfb6ff5d85028c25cb12f6" +checksum = "4716a3a0933a1d01c2f72450e89596eb51dd34ef3c211ccd875acdf1f8fe47ed" dependencies = [ - "unicode-bidi", - "unicode-normalization", + "icu_normalizer", + "icu_properties", + "smallvec", + "utf8_iter", ] [[package]] @@ -1291,6 +1422,12 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "01cda141df6706de531b6c46c3a33ecca755538219bd484262fa09410c13539c" [[package]] +name = "litemap" +version = "0.7.3" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "643cb0b8d4fcc284004d5fd0d67ccf61dfffadb7f75e1e71bc420f4688a3a704" + +[[package]] name = "lock_api" version = "0.4.11" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -1353,9 +1490,9 @@ checksum = "540f1c43aed89909c0cc0cc604e3bb2f7e7a341a3728a9e6cfe760e733cd11ed" [[package]] name = "memchr" -version = "2.7.2" +version = "2.7.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "6c8640c5d730cb13ebd907d8d04b52f55ac9a2eec55b440c8892f40d56c76c1d" +checksum = "78ca9ab1a0babb1e7d5695e3530886289c18cf2f87ec19a575a0abdce112e3a3" [[package]] name = "mimalloc" @@ -1841,6 +1978,7 @@ dependencies = [ "notify", "parking_lot", "rayon", + "red_knot_python_semantic", "ruff_index", "ruff_notebook", "ruff_python_ast", @@ -1858,6 +1996,28 @@ dependencies = [ ] [[package]] +name = "red_knot_python_semantic" +version = "0.0.0" +dependencies = [ + "anyhow", + "bitflags 2.5.0", + "hashbrown 0.14.5", + "indexmap", + "ruff_db", + "ruff_index", + "ruff_python_ast", + "ruff_python_parser", + "ruff_python_stdlib", + "ruff_text_size", + "rustc-hash", + "salsa-2022", + "smallvec", + "smol_str", + "tempfile", + "tracing", +] + +[[package]] name = "redox_syscall" version = "0.4.1" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -1938,7 +2098,7 @@ dependencies = [ [[package]] name = "ruff" -version = "0.4.9" +version = "0.4.10" dependencies = [ "anyhow", "argfile", @@ -2029,6 +2189,8 @@ dependencies = [ "countme", "dashmap", "filetime", + "itertools 0.13.0", + "once_cell", "ruff_python_ast", "ruff_python_parser", "ruff_source_file", @@ -2036,6 +2198,7 @@ dependencies = [ "rustc-hash", "salsa-2022", "tracing", + "zip", ] [[package]] @@ -2115,7 +2278,7 @@ dependencies = [ [[package]] name = "ruff_linter" -version = "0.4.9" +version = "0.4.10" dependencies = [ "aho-corasick", "annotate-snippets 0.9.2", @@ -2333,7 +2496,6 @@ version = "0.0.0" dependencies = [ "bitflags 2.5.0", "is-macro", - "ruff_db", "ruff_index", "ruff_python_ast", "ruff_python_parser", @@ -2341,8 +2503,6 @@ dependencies = [ "ruff_source_file", "ruff_text_size", "rustc-hash", - "salsa-2022", - "tracing", ] [[package]] @@ -2796,6 +2956,12 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "6980e8d7511241f8acf4aebddbb1ff938df5eebe98691418c4468d0b72a96a67" [[package]] +name = "stable_deref_trait" +version = "1.2.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "a8f112729512f8e442d81f95a8a7ddf2b7c6b8a1a6f509a95864142b30cab2d3" + +[[package]] name = "static_assertions" version = "1.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -2873,6 +3039,17 @@ dependencies = [ ] [[package]] +name = "synstructure" +version = "0.13.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "c8af7666ab7b6390ab78131fb5b0fce11d6b7a6951602017c35fa82800708971" +dependencies = [ + "proc-macro2", + "quote", + "syn 2.0.66", +] + +[[package]] name = "tempfile" version = "3.10.1" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -2991,6 +3168,16 @@ dependencies = [ ] [[package]] +name = "tinystr" +version = "0.7.6" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "9117f5d4db391c1cf6927e7bea3db74b9a1c1add8f7eda9ffd5364f40f57b82f" +dependencies = [ + "displaydoc", + "zerovec", +] + +[[package]] name = "tinytemplate" version = "1.2.1" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -3184,12 +3371,6 @@ dependencies = [ ] [[package]] -name = "unicode-bidi" -version = "0.3.15" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "08f95100a766bf4f8f28f90d77e0a5461bbdb219042e7679bebe79004fed8d75" - -[[package]] name = "unicode-ident" version = "1.0.12" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -3263,9 +3444,9 @@ dependencies = [ [[package]] name = "url" -version = "2.5.0" +version = "2.5.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "31e6302e3bb753d46e83516cae55ae196fc0c309407cf11ab35cc51a4c2a4633" +checksum = "f7c25da092f0a868cdf09e8674cd3b7ef3a7d92a24253e663a2fb85e2496de56" dependencies = [ "form_urlencoded", "idna", @@ -3274,6 +3455,18 @@ dependencies = [ ] [[package]] +name = "utf16_iter" +version = "1.0.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "c8232dd3cdaed5356e0f716d285e4b40b932ac434100fe9b7e0e8e935b9e6246" + +[[package]] +name = "utf8_iter" +version = "1.0.4" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "b6c140620e7ffbb22c2dee59cafe6084a59b5ffc27a8859a5f0d494b5d52b6be" + +[[package]] name = "utf8parse" version = "0.2.1" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -3689,6 +3882,18 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "d135d17ab770252ad95e9a872d365cf3090e3be864a34ab46f48555993efc904" [[package]] +name = "write16" +version = "1.0.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "d1890f4022759daae28ed4fe62859b1236caebfc61ede2f63ed4e695f3f6d936" + +[[package]] +name = "writeable" +version = "0.5.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "1e9df38ee2d2c3c5948ea468a8406ff0db0b29ae1ffde1bcf20ef305bcc95c51" + +[[package]] name = "yansi" version = "0.5.1" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -3704,6 +3909,30 @@ dependencies = [ ] [[package]] +name = "yoke" +version = "0.7.4" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "6c5b1314b079b0930c31e3af543d8ee1757b1951ae1e1565ec704403a7240ca5" +dependencies = [ + "serde", + "stable_deref_trait", + "yoke-derive", + "zerofrom", +] + +[[package]] +name = "yoke-derive" +version = "0.7.4" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "28cc31741b18cb6f1d5ff12f5b7523e3d6eb0852bbbad19d73905511d9849b95" +dependencies = [ + "proc-macro2", + "quote", + "syn 2.0.66", + "synstructure", +] + +[[package]] name = "zerocopy" version = "0.7.32" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -3724,12 +3953,55 @@ dependencies = [ ] [[package]] +name = "zerofrom" +version = "0.1.4" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "91ec111ce797d0e0784a1116d0ddcdbea84322cd79e5d5ad173daeba4f93ab55" +dependencies = [ + "zerofrom-derive", +] + +[[package]] +name = "zerofrom-derive" +version = "0.1.4" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "0ea7b4a3637ea8669cedf0f1fd5c286a17f3de97b8dd5a70a6c167a1730e63a5" +dependencies = [ + "proc-macro2", + "quote", + "syn 2.0.66", + "synstructure", +] + +[[package]] name = "zeroize" version = "1.7.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "525b4ec142c6b68a2d10f01f7bbf6755599ca3f81ea53b8431b7dd348f5fdb2d" [[package]] +name = "zerovec" +version = "0.10.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "bb2cc8827d6c0994478a15c53f374f46fbd41bea663d809b14744bc42e6b109c" +dependencies = [ + "yoke", + "zerofrom", + "zerovec-derive", +] + +[[package]] +name = "zerovec-derive" +version = "0.10.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "97cf56601ee5052b4417d90c8755c6683473c926039908196cf35d99f893ebe7" +dependencies = [ + "proc-macro2", + "quote", + "syn 2.0.66", +] + +[[package]] name = "zip" version = "0.6.6" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -3762,9 +4034,9 @@ dependencies = [ [[package]] name = "zstd-sys" -version = "2.0.10+zstd.1.5.6" +version = "2.0.11+zstd.1.5.6" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c253a4914af5bafc8fa8c86ee400827e83cf6ec01195ec1f1ed8441bf00d65aa" +checksum = "75652c55c0b6f3e6f12eb786fe1bc960396bf05a1eb3bf1f3691c3610ac2e6d4" dependencies = [ "cc", "pkg-config", diff --git a/pkgs/development/tools/ruff/default.nix b/pkgs/development/tools/ruff/default.nix index 75285de4612b7..a58eadf632ff4 100644 --- a/pkgs/development/tools/ruff/default.nix +++ b/pkgs/development/tools/ruff/default.nix @@ -12,13 +12,13 @@ rustPlatform.buildRustPackage rec { pname = "ruff"; - version = "0.4.9"; + version = "0.4.10"; src = fetchFromGitHub { owner = "astral-sh"; repo = "ruff"; rev = "refs/tags/v${version}"; - hash = "sha256-40ZXD52d/kZNkSZ64H/s/OiiU99IiblGfYa4KmU8xD4="; + hash = "sha256-FRBuvXtnbxRWoI0f8SM0U0Z5TRyX5Tbgq3d34Oh2bG4="; }; cargoLock = { diff --git a/pkgs/development/tools/rust/cargo-bolero/default.nix b/pkgs/development/tools/rust/cargo-bolero/default.nix index c242732b237bb..550ced495ef20 100644 --- a/pkgs/development/tools/rust/cargo-bolero/default.nix +++ b/pkgs/development/tools/rust/cargo-bolero/default.nix @@ -1,18 +1,22 @@ -{ lib, rustPlatform, fetchCrate, libbfd, libopcodes, libunwind }: +{ lib, rustPlatform, fetchCrate, libbfd, libopcodes, libunwind, nix-update-script }: rustPlatform.buildRustPackage rec { pname = "cargo-bolero"; - version = "0.9.0"; + version = "0.11.2"; src = fetchCrate { inherit pname version; - sha256 = "sha256-BuqbM55P/st+4XUSCwrqILUUCfwvSlxhKQFO+IZLa8U="; + sha256 = "sha256-Xcu91CbIDBLSojWQJjvdFWJiqjMteAxF105lemCAipk="; }; - cargoSha256 = "sha256-+TxMOKoId13meXqmr1QjDZMNqBnPEDQF1VSPheq8Ji0="; + cargoSha256 = "sha256-QLtf42Il+XHWeaUdh8jNNWU1sXaVe82sYOKiHLoXw2M="; buildInputs = [ libbfd libopcodes libunwind ]; + passthru = { + updateScript = nix-update-script { }; + }; + meta = with lib; { description = "Fuzzing and property testing front-end framework for Rust"; mainProgram = "cargo-bolero"; diff --git a/pkgs/development/tools/rust/cargo-deb/default.nix b/pkgs/development/tools/rust/cargo-deb/default.nix index 676cc0624a501..693b92d746766 100644 --- a/pkgs/development/tools/rust/cargo-deb/default.nix +++ b/pkgs/development/tools/rust/cargo-deb/default.nix @@ -7,16 +7,16 @@ rustPlatform.buildRustPackage rec { pname = "cargo-deb"; - version = "2.2.0"; + version = "2.3.0"; src = fetchFromGitHub { owner = "kornelski"; repo = pname; rev = "v${version}"; - hash = "sha256-KVHci8h30cAZZffRA3e0gb1uAMv2UDiC9HkiqNaqSS4="; + hash = "sha256-iXqYaRDRaqmI7Y3oEE1fFKYFX/+7Rt3qpzpQ5+l8Z3w="; }; - cargoHash = "sha256-swRiR+YeQVT7mMzJHQtCI4wcG9z44r34YDv8WmEPr08="; + cargoHash = "sha256-LRE18jzgx/aONJkeqzEyDWrWNyp/FmxUGmOy3A9vA7Q="; nativeBuildInputs = [ makeWrapper diff --git a/pkgs/development/tools/rust/cargo-dist/default.nix b/pkgs/development/tools/rust/cargo-dist/default.nix index 7969c8b15a5f1..50eb5146262e9 100644 --- a/pkgs/development/tools/rust/cargo-dist/default.nix +++ b/pkgs/development/tools/rust/cargo-dist/default.nix @@ -14,16 +14,16 @@ rustPlatform.buildRustPackage rec { pname = "cargo-dist"; - version = "0.15.0"; + version = "0.16.0"; src = fetchFromGitHub { owner = "axodotdev"; repo = "cargo-dist"; rev = "v${version}"; - hash = "sha256-p8acrP09/m3pdw24j8KUoZnqWMt2KwhVro9kNIABngw="; + hash = "sha256-KF8fdUfAXfSLIzt9+7sgbrDgKe+6478eXCGFxxX/WC0="; }; - cargoHash = "sha256-ecGtY6IpAiFjcN/E43STsEjbHXqSC4Vo6z3mH01rTI4="; + cargoHash = "sha256-jrHcr/YsMTEk+X1/puausYI75Ozqdi8hol7sRFUJkPU="; nativeBuildInputs = [ pkg-config diff --git a/pkgs/development/tools/rust/cargo-generate/default.nix b/pkgs/development/tools/rust/cargo-generate/default.nix index a9b2bfb4c383f..716f9e9778155 100644 --- a/pkgs/development/tools/rust/cargo-generate/default.nix +++ b/pkgs/development/tools/rust/cargo-generate/default.nix @@ -11,16 +11,16 @@ rustPlatform.buildRustPackage rec { pname = "cargo-generate"; - version = "0.21.0"; + version = "0.21.1"; src = fetchFromGitHub { owner = "cargo-generate"; repo = "cargo-generate"; rev = "v${version}"; - sha256 = "sha256-utJYgbmCLi7rWKsRDZqJDCtEbVijAjnMqpYoALKO+Ho="; + sha256 = "sha256-Pza1MK5yWpuNfaaFAJy5/Pf+t0TN1Hzc5wKcpmMpEf0="; }; - cargoHash = "sha256-9rgdpoXNKaw850EnK6jDwT+jba/B/66PqQackx2knuk="; + cargoHash = "sha256-b6WfsDTAZgxA977JhdlafE+POPvMLl8Z7CzEf+L2+Us="; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/development/tools/rust/cargo-public-api/default.nix b/pkgs/development/tools/rust/cargo-public-api/default.nix index 9881b7050e0f8..4d2fcecfc5de5 100644 --- a/pkgs/development/tools/rust/cargo-public-api/default.nix +++ b/pkgs/development/tools/rust/cargo-public-api/default.nix @@ -10,14 +10,14 @@ rustPlatform.buildRustPackage rec { pname = "cargo-public-api"; - version = "0.35.0"; + version = "0.35.1"; src = fetchCrate { inherit pname version; - hash = "sha256-NRL+7v1K2Y6lm1yuNZODkMaf2Xeib8KjOvPbn+nvbA4="; + hash = "sha256-Jz4sdf/Heh0+rnz2JP5TJFqRPCdi1Km+PSoafkmq/6Y="; }; - cargoHash = "sha256-/IpSIqZfBliiWzDXoSJMK/B8wDw1eyJ/gecHwd90c+A="; + cargoHash = "sha256-K45PT28cxYWn7lF/ghhgCXcLA9uZUiI+3WMYeU3bbzM="; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/development/tools/sslmate-agent/default.nix b/pkgs/development/tools/sslmate-agent/default.nix index dccc22e7fe9e1..174507afc21c4 100644 --- a/pkgs/development/tools/sslmate-agent/default.nix +++ b/pkgs/development/tools/sslmate-agent/default.nix @@ -36,6 +36,6 @@ stdenv.mkDerivation rec { homepage = "https://sslmate.com/"; sourceProvenance = with sourceTypes; [ binaryNativeCode ]; license = licenses.unfree; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; }; } diff --git a/pkgs/development/tools/twilio-cli/default.nix b/pkgs/development/tools/twilio-cli/default.nix index 7a5a3e4bad083..fe0544b671378 100644 --- a/pkgs/development/tools/twilio-cli/default.nix +++ b/pkgs/development/tools/twilio-cli/default.nix @@ -2,11 +2,11 @@ stdenvNoCC.mkDerivation (finalAttrs: { pname = "twilio-cli"; - version = "5.20.1"; + version = "5.21.0"; src = fetchzip { url = "https://twilio-cli-prod.s3.amazonaws.com/twilio-v${finalAttrs.version}/twilio-v${finalAttrs.version}.tar.gz"; - hash = "sha256-tS30wEXUhzPUPh5gY+UZF274/EOfwMGU19glXUrDuw0="; + hash = "sha256-rtI89baKJS4itwTcHY9IjKeskQO6mz/c746wdVy4cG4="; }; buildInputs = [ nodejs-slim ]; diff --git a/pkgs/development/tools/vndr/default.nix b/pkgs/development/tools/vndr/default.nix deleted file mode 100644 index 29668e3097e7c..0000000000000 --- a/pkgs/development/tools/vndr/default.nix +++ /dev/null @@ -1,25 +0,0 @@ -{ lib, buildGoPackage, fetchFromGitHub }: - -buildGoPackage rec { - pname = "vndr-unstable"; - version = "2020-07-28"; - rev = "f12b881cb8f081a5058408a58f429b9014833fc6"; - - goPackagePath = "github.com/LK4D4/vndr"; - excludedPackages = "test"; - - src = fetchFromGitHub { - inherit rev; - owner = "LK4D4"; - repo = "vndr"; - sha256 = "04za4x8p8qzwjlp4i0j0gsb4xx0x9f4yp3ab0b97r50pah1ac2g3"; - }; - - meta = { - description = "Stupid golang vendoring tool, inspired by docker vendor script"; - mainProgram = "vndr"; - homepage = "https://github.com/LK4D4/vndr"; - maintainers = with lib.maintainers; [ vdemeester rvolosatovs ]; - license = lib.licenses.asl20; - }; -} diff --git a/pkgs/development/tools/vsce/default.nix b/pkgs/development/tools/vsce/default.nix index 9ad8d58b42bb3..a5002fdabc372 100644 --- a/pkgs/development/tools/vsce/default.nix +++ b/pkgs/development/tools/vsce/default.nix @@ -12,16 +12,16 @@ buildNpmPackage rec { pname = "vsce"; - version = "2.27.0"; + version = "2.28.0"; src = fetchFromGitHub { owner = "microsoft"; repo = "vscode-vsce"; rev = "v${version}"; - hash = "sha256-SmUH2YBVNEydGZLEeAjV6oO+DdbrfqraqnY9C+4GUFI="; + hash = "sha256-LMePEsNU62oSp/aaeUZY7A+0rTHiYOBqWBiqSpXUJOY="; }; - npmDepsHash = "sha256-pE94jQX5i576Lmm8ebAKPMpz95w9n4uGOeLXU8SHtcs="; + npmDepsHash = "sha256-Ml65YY4vqzntgCP9FoEGpR5rMkYL+alN9pSpbvR28E0="; postPatch = '' substituteInPlace package.json --replace '"version": "0.0.0"' '"version": "${version}"' diff --git a/pkgs/development/web/bun/default.nix b/pkgs/development/web/bun/default.nix index 12ad864a3a402..4fa21673a61d3 100644 --- a/pkgs/development/web/bun/default.nix +++ b/pkgs/development/web/bun/default.nix @@ -12,7 +12,7 @@ }: stdenvNoCC.mkDerivation rec { - version = "1.1.13"; + version = "1.1.15"; pname = "bun"; src = passthru.sources.${stdenvNoCC.hostPlatform.system} or (throw "Unsupported system: ${stdenvNoCC.hostPlatform.system}"); @@ -51,19 +51,19 @@ stdenvNoCC.mkDerivation rec { sources = { "aarch64-darwin" = fetchurl { url = "https://github.com/oven-sh/bun/releases/download/bun-v${version}/bun-darwin-aarch64.zip"; - hash = "sha256-pg6nL+brc1B7GyBt8Y/FFqdBKt8uTw9KhNqITYbdi5A="; + hash = "sha256-T6V3B54rpdNmF60lX137Pau80+E/21aSl6LCa+6GHq4="; }; "aarch64-linux" = fetchurl { url = "https://github.com/oven-sh/bun/releases/download/bun-v${version}/bun-linux-aarch64.zip"; - hash = "sha256-18iAnXEELi+YvRVs1PP1MqZPeROVVl4T+qu2izyE4s0="; + hash = "sha256-ekWcoZxGsq1AtBLflzzhVQ2lVPwQt61Y86MVHtFJsUQ="; }; "x86_64-darwin" = fetchurl { url = "https://github.com/oven-sh/bun/releases/download/bun-v${version}/bun-darwin-x64.zip"; - hash = "sha256-NeYGWYG3kRevI0CIShe4AHJzLRDV9cFbiaP7lpZO18A="; + hash = "sha256-o1NWjuWTwIQamLG10UU7LawZ9jB8RDuLWJKbCCEIdeU="; }; "x86_64-linux" = fetchurl { url = "https://github.com/oven-sh/bun/releases/download/bun-v${version}/bun-linux-x64.zip"; - hash = "sha256-QC6dsWjRYiuBIojxPvs8NFMSU6ZbXbZ9Q/+u+45NmPc="; + hash = "sha256-PLGR7TEdy3sQ3S9rKWe8z8gjrmb8STyYPzbRPaJYSPI="; }; }; updateScript = writeShellScript "update-bun" '' @@ -92,7 +92,7 @@ stdenvNoCC.mkDerivation rec { lgpl21Only # javascriptcore and webkit ]; mainProgram = "bun"; - maintainers = with maintainers; [ DAlperin jk thilobillerbeck cdmistman coffeeispower ]; + maintainers = with maintainers; [ DAlperin jk thilobillerbeck cdmistman coffeeispower diogomdp ]; platforms = builtins.attrNames passthru.sources; # Broken for Musl at 2024-01-13, tracking issue: # https://github.com/NixOS/nixpkgs/issues/280716 diff --git a/pkgs/development/web/deno/default.nix b/pkgs/development/web/deno/default.nix index f1a9704851079..9d803160d5755 100644 --- a/pkgs/development/web/deno/default.nix +++ b/pkgs/development/web/deno/default.nix @@ -13,16 +13,16 @@ }: rustPlatform.buildRustPackage rec { pname = "deno"; - version = "1.44.2"; + version = "1.44.4"; src = fetchFromGitHub { owner = "denoland"; repo = pname; rev = "v${version}"; - hash = "sha256-Q76j1cbRL52jmmkpTZMkpP3/FCeGZqKYAN819mQY9BE="; + hash = "sha256-DQrN5x+UiY6lLY1h96sTWBhD0jrvNyCdTwHsyFo95VE="; }; - cargoHash = "sha256-UtnHOzlko5RUAbohwU755BDLSF/Rx20vabaKokEsRLU="; + cargoHash = "sha256-QGBFDFZpOqPj/U1PhMaTZ3mI+d2jG6vYAkW6aNG4wyQ="; postPatch = '' # upstream uses lld on aarch64-darwin for faster builds diff --git a/pkgs/development/web/function-runner/default.nix b/pkgs/development/web/function-runner/default.nix index f183118fab8af..0494bb1e0593b 100644 --- a/pkgs/development/web/function-runner/default.nix +++ b/pkgs/development/web/function-runner/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "function-runner"; - version = "5.1.0"; + version = "5.1.2"; src = fetchFromGitHub { owner = "Shopify"; repo = pname; rev = "v${version}"; - sha256 = "sha256-jhT/xkkPC0gpQqn2gOymEYP1afULd4W7pf7Z8XHGces="; + sha256 = "sha256-D8XqWVgW2pdNDwgWTpDG5FXlVHTWyKSx6ugJ9eqOl0U="; }; - cargoHash = "sha256-kiic/rVvSUxNGfEYAa23WOgyfCcnG4oI/iP1OfkL95Y="; + cargoHash = "sha256-F+QArzUBgCg7yWL3Vcn+u+G/Hi6OmArCBB+4yYQYIVY="; meta = with lib; { description = "CLI tool which allows you to run Wasm Functions intended for the Shopify Functions infrastructure"; diff --git a/pkgs/games/empty-epsilon/default.nix b/pkgs/games/empty-epsilon/default.nix index 657607031295a..3bcf141906016 100644 --- a/pkgs/games/empty-epsilon/default.nix +++ b/pkgs/games/empty-epsilon/default.nix @@ -80,7 +80,7 @@ stdenv.mkDerivation { mainProgram = "EmptyEpsilon"; homepage = "https://daid.github.io/EmptyEpsilon/"; license = licenses.gpl2Plus; - maintainers = with maintainers; [ fpletz lheckemann ma27 ]; + maintainers = with maintainers; [ fpletz ma27 ]; platforms = platforms.linux; }; } diff --git a/pkgs/games/endless-sky/default.nix b/pkgs/games/endless-sky/default.nix index 9a76a78cdb4c3..7fb1753445922 100644 --- a/pkgs/games/endless-sky/default.nix +++ b/pkgs/games/endless-sky/default.nix @@ -63,7 +63,7 @@ stdenv.mkDerivation rec { cc-by-sa-40 publicDomain ]; - maintainers = with maintainers; [ lheckemann _360ied ]; + maintainers = with maintainers; [ _360ied ]; platforms = platforms.linux; # Maybe other non-darwin Unix }; } diff --git a/pkgs/games/ferium/default.nix b/pkgs/games/ferium/default.nix index f564b715f81d3..ea9a092d2ccb4 100644 --- a/pkgs/games/ferium/default.nix +++ b/pkgs/games/ferium/default.nix @@ -9,18 +9,18 @@ rustPlatform.buildRustPackage rec { pname = "ferium"; - version = "4.6.0"; + version = "4.7.0"; src = fetchFromGitHub { owner = "gorilla-devs"; repo = pname; rev = "v${version}"; - hash = "sha256-a4bX5pC3FSCswvUG1wFeo3e6F+CmyfYowv7OhF2DZss="; + hash = "sha256-jj3BdaxH7ofhHNF2eu+burn6+/0bPQQZ8JfjXAFyN4A="; }; buildInputs = lib.optionals stdenv.isDarwin [ Security SystemConfiguration ]; - cargoHash = "sha256-CyDFBSTdUjapMtb6cNOEV53wTJDWotdSZZgHAQpsa9I="; + cargoHash = "sha256-dysKHi6CqPrF/q7LPn1+TwOP3p2KwauhTuqLCda3OSs="; # Disable the GUI file picker so that GTK/XDG dependencies aren't used buildNoDefaultFeatures = true; diff --git a/pkgs/games/hmcl/default.nix b/pkgs/games/hmcl/default.nix index 2ff06a19219d9..3ac7b9a96cdac 100644 --- a/pkgs/games/hmcl/default.nix +++ b/pkgs/games/hmcl/default.nix @@ -1,7 +1,6 @@ { lib , stdenv , fetchurl -, makeBinaryWrapper , makeDesktopItem , wrapGAppsHook3 , copyDesktopItems @@ -15,6 +14,7 @@ , alsa-lib , wayland , libpulseaudio +, gobject-introspection }: let @@ -49,42 +49,51 @@ stdenv.mkDerivation (finalAttrs: { ]; nativeBuildInputs = [ - makeBinaryWrapper + gobject-introspection wrapGAppsHook3 copyDesktopItems imagemagick ]; - installPhase = - let - libpath = lib.makeLibraryPath ([ - libGL - glfw - openal - libglvnd - ] ++ lib.optionals stdenv.isLinux [ - xorg.libX11 - xorg.libXxf86vm - xorg.libXext - xorg.libXcursor - xorg.libXrandr - xorg.libXtst - libpulseaudio - wayland - alsa-lib - ]); - in - '' - runHook preInstall - mkdir -p $out/{bin,lib/hmcl} - cp $src $out/lib/hmcl/hmcl.jar - magick ${icon} hmcl.png - install -Dm644 hmcl-1.png $out/share/icons/hicolor/32x32/apps/hmcl.png - makeBinaryWrapper ${jre}/bin/java $out/bin/hmcl \ - --add-flags "-jar $out/lib/hmcl/hmcl.jar" \ - --set LD_LIBRARY_PATH ${libpath} - runHook postInstall - ''; + installPhase = '' + runHook preInstall + + mkdir -p $out/{bin,lib/hmcl} + cp $src $out/lib/hmcl/hmcl.jar + magick ${icon} hmcl.png + install -Dm644 hmcl-1.png $out/share/icons/hicolor/32x32/apps/hmcl.png + + runHook postInstall + ''; + + fixupPhase = + let + libpath = lib.makeLibraryPath ([ + libGL + glfw + openal + libglvnd + ] ++ lib.optionals stdenv.isLinux [ + xorg.libX11 + xorg.libXxf86vm + xorg.libXext + xorg.libXcursor + xorg.libXrandr + xorg.libXtst + libpulseaudio + wayland + alsa-lib + ]); + in '' + runHook preFixup + + makeBinaryWrapper ${jre}/bin/java $out/bin/hmcl \ + --add-flags "-jar $out/lib/hmcl/hmcl.jar" \ + --set LD_LIBRARY_PATH ${libpath} \ + ''${gappsWrapperArgs[@]} + + runHook postFixup + ''; meta = with lib; { homepage = "https://hmcl.huangyuhui.net"; diff --git a/pkgs/games/manaplus/default.nix b/pkgs/games/manaplus/default.nix index 7d71b1f51751d..974564a4d5e35 100644 --- a/pkgs/games/manaplus/default.nix +++ b/pkgs/games/manaplus/default.nix @@ -24,7 +24,7 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; meta = { - maintainers = [ lib.maintainers.lheckemann ]; + maintainers = [ ]; description = "Free OpenSource 2D MMORPG client"; homepage = "https://manaplus.org/"; license = lib.licenses.gpl2; diff --git a/pkgs/games/openclonk/default.nix b/pkgs/games/openclonk/default.nix index 66b0d8ac06e15..47c4cc6e4612a 100644 --- a/pkgs/games/openclonk/default.nix +++ b/pkgs/games/openclonk/default.nix @@ -55,7 +55,7 @@ in stdenv.mkDerivation rec { homepage = "https://www.openclonk.org"; license = if enableSoundtrack then licenses.unfreeRedistributable else licenses.isc; mainProgram = "openclonk"; - maintainers = with maintainers; [ lheckemann ]; + maintainers = with maintainers; [ ]; platforms = [ "x86_64-linux" "i686-linux" ]; }; } diff --git a/pkgs/games/papermc/versions.json b/pkgs/games/papermc/versions.json index aaabc271f55f6..67fb3903da117 100644 --- a/pkgs/games/papermc/versions.json +++ b/pkgs/games/papermc/versions.json @@ -52,7 +52,11 @@ "version": "1.20.5-22" }, "1.20.6": { - "hash": "sha256-r9CmEycnEE4PpBHbzhaLamt3PykQSO0J+uXt6fIqV1k=", - "version": "1.20.6-137" + "hash": "sha256-JMWN40FTFg87RmxwyUr87Js9KyCmaBhj6Dnfe3vblZQ=", + "version": "1.20.6-147" + }, + "1.21": { + "hash": "sha256-LaQyYAlZ2GQKzT3GlOKr1RUhu0XQpILuqPcDHdczqcU=", + "version": "1.21-15" } } diff --git a/pkgs/games/rare/default.nix b/pkgs/games/rare/default.nix index 6d46b09626f66..ae65bdc2f1719 100644 --- a/pkgs/games/rare/default.nix +++ b/pkgs/games/rare/default.nix @@ -57,7 +57,7 @@ buildPythonApplication rec { meta = with lib; { description = "GUI for Legendary, an Epic Games Launcher open source alternative"; homepage = "https://github.com/RareDevs/Rare"; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; license = licenses.gpl3Only; platforms = platforms.linux; mainProgram = "rare"; diff --git a/pkgs/games/steam/fhsenv.nix b/pkgs/games/steam/fhsenv.nix index 559aee92c9f34..a2157da80d6b9 100644 --- a/pkgs/games/steam/fhsenv.nix +++ b/pkgs/games/steam/fhsenv.nix @@ -280,7 +280,7 @@ in buildFHSEnv rec { WARNING: Steam is not set up. Add the following options to /etc/nixos/configuration.nix and then run \`sudo nixos-rebuild switch\`: { - hardware.opengl.driSupport32Bit = true; + hardware.graphics.enable32Bit = true; hardware.pulseaudio.support32Bit = true; } ** diff --git a/pkgs/games/vcmi/default.nix b/pkgs/games/vcmi/default.nix index 4ec4e030b1635..dbbb3891f51cf 100644 --- a/pkgs/games/vcmi/default.nix +++ b/pkgs/games/vcmi/default.nix @@ -28,14 +28,14 @@ stdenv.mkDerivation rec { pname = "vcmi"; - version = "1.5.2"; + version = "1.5.3"; src = fetchFromGitHub { owner = "vcmi"; repo = "vcmi"; rev = version; fetchSubmodules = true; - hash = "sha256-Hn3qNTWFU3SMBTJxA2owsAQqIl9wZy33B2Mp4UdlLn4="; + hash = "sha256-P1Rt7VvLaesAQ5JEHv+3cG51EzDAwhcQ45RTcvYlKVc="; }; nativeBuildInputs = [ diff --git a/pkgs/kde/frameworks/ksvg/default.nix b/pkgs/kde/frameworks/ksvg/default.nix index 82dbce5c08294..0aa6053f00974 100644 --- a/pkgs/kde/frameworks/ksvg/default.nix +++ b/pkgs/kde/frameworks/ksvg/default.nix @@ -2,9 +2,19 @@ mkKdeDerivation, qtdeclarative, qtsvg, + fetchpatch, }: mkKdeDerivation { pname = "ksvg"; + patches = [ + # Backport patch for SVG rendering glitches with fractional scale + # FIXME: remove in 6.4 + (fetchpatch { + url = "https://invent.kde.org/frameworks/ksvg/-/commit/74f9f9cbd226407f8cde08c5cd5a711444e2775d.patch"; + hash = "sha256-i4Wcvo0CkpN2qdlTesnzUyd0mzG1VKbycP5Pd1rHPVg="; + }) + ]; + extraBuildInputs = [qtdeclarative qtsvg]; } diff --git a/pkgs/kde/gear/kcachegrind/default.nix b/pkgs/kde/gear/kcachegrind/default.nix index 9023492d17402..52de8a88e6665 100644 --- a/pkgs/kde/gear/kcachegrind/default.nix +++ b/pkgs/kde/gear/kcachegrind/default.nix @@ -1,9 +1,15 @@ { + lib, mkKdeDerivation, qttools, + graphviz, }: mkKdeDerivation { pname = "kcachegrind"; extraNativeBuildInputs = [qttools]; + + qtWrapperArgs = [ + "--suffix PATH : ${lib.makeBinPath [ graphviz ]}" + ]; } diff --git a/pkgs/kde/gear/kdenlive/default.nix b/pkgs/kde/gear/kdenlive/default.nix index ad866db67a793..fe5f7e4c13b11 100644 --- a/pkgs/kde/gear/kdenlive/default.nix +++ b/pkgs/kde/gear/kdenlive/default.nix @@ -11,6 +11,7 @@ shared-mime-info, libv4l, frei0r, + fetchpatch, }: mkKdeDerivation { pname = "kdenlive"; @@ -23,6 +24,13 @@ mkKdeDerivation { ffmpeg = ffmpeg-full; } ) + + # Backport fix for crash after 5 minutes + # FIXME: remove in next release + (fetchpatch { + url = "https://invent.kde.org/multimedia/kdenlive/-/commit/8be0e826471332bb739344ebe1859298c46e9e0f.patch"; + hash = "sha256-5hLePH5NlO4Lx8lg9kjBPI4jTmP666RGplaVCmS/9TA="; + }) ]; extraBuildInputs = [ diff --git a/pkgs/misc/cups/drivers/hll2390dw-cups/default.nix b/pkgs/misc/cups/drivers/hll2390dw-cups/default.nix deleted file mode 100644 index bd9974d5b6447..0000000000000 --- a/pkgs/misc/cups/drivers/hll2390dw-cups/default.nix +++ /dev/null @@ -1,72 +0,0 @@ -{ lib, stdenv, fetchurl, makeWrapper -, cups -, dpkg -, a2ps, ghostscript, gnugrep, gnused, coreutils, file, perl, which -}: - -stdenv.mkDerivation rec { - pname = "hll2390dw-cups"; - version = "4.0.0-1"; - - src = fetchurl { - # The i386 part is a lie. There are x86, x86_64 and armv7l drivers. - # Though this builds only supports x86_64 for now. - url = "https://download.brother.com/welcome/dlf103579/hll2390dwpdrv-${version}.i386.deb"; - sha256 = "0w8rxh1sa5amxr87qmzs4m2p06b1b36wn2q127mg427sbkh1rwni"; - }; - - nativeBuildInputs = [ makeWrapper ]; - buildInputs = [ cups ghostscript dpkg a2ps ]; - - dontUnpack = true; - - installPhase = '' - dpkg-deb -x $src $out - - substituteInPlace $out/opt/brother/Printers/HLL2390DW/lpd/lpdfilter \ - --replace /opt "$out/opt" \ - --replace /usr/bin/perl ${perl}/bin/perl \ - --replace "BR_PRT_PATH =~" "BR_PRT_PATH = \"$out\"; #" \ - --replace "PRINTER =~" "PRINTER = \"HLL2390DW\"; #" - - # FIXME : Allow i686 and armv7l variations to be setup instead. - _PLAT=x86_64 - patchelf --set-interpreter $(cat $NIX_CC/nix-support/dynamic-linker) \ - $out/opt/brother/Printers/HLL2390DW/lpd/$_PLAT/brprintconflsr3 - patchelf --set-interpreter $(cat $NIX_CC/nix-support/dynamic-linker) \ - $out/opt/brother/Printers/HLL2390DW/lpd/$_PLAT/rawtobr3 - ln -s $out/opt/brother/Printers/HLL2390DW/lpd/$_PLAT/brprintconflsr3 $out/opt/brother/Printers/HLL2390DW/lpd/brprintconflsr3 - ln -s $out/opt/brother/Printers/HLL2390DW/lpd/$_PLAT/rawtobr3 $out/opt/brother/Printers/HLL2390DW/lpd/rawtobr3 - - for f in \ - $out/opt/brother/Printers/HLL2390DW/cupswrapper/lpdwrapper \ - $out/opt/brother/Printers/HLL2390DW/cupswrapper/paperconfigml2 \ - ; do - #substituteInPlace $f \ - wrapProgram $f \ - --prefix PATH : ${lib.makeBinPath [ - coreutils ghostscript gnugrep gnused - ]} - done - - mkdir -p $out/lib/cups/filter/ - ln -s $out/opt/brother/Printers/HLL2390DW/lpd/lpdfilter $out/lib/cups/filter/brother_lpdwrapper_HLL2390DW - - mkdir -p $out/share/cups/model - ln -s $out/opt/brother/Printers/HLL2390DW/cupswrapper/brother-HLL2390DW-cups-en.ppd $out/share/cups/model/ - - wrapProgram $out/opt/brother/Printers/HLL2390DW/lpd/lpdfilter \ - --prefix PATH ":" ${ lib.makeBinPath [ ghostscript a2ps file gnused gnugrep coreutils which ] } - ''; - - meta = with lib; { - homepage = "http://www.brother.com/"; - description = "Brother HL-L2390DW combined print driver"; - sourceProvenance = with sourceTypes; [ binaryNativeCode ]; - license = licenses.unfree; - platforms = [ "x86_64-linux" ]; - downloadPage = "http://support.brother.com/g/b/downloadlist.aspx?c=us_ot&lang=en&prod=hll2390dw_us&os=128"; - maintainers = [ maintainers.samueldr ]; - }; -} - diff --git a/pkgs/misc/fastly/default.nix b/pkgs/misc/fastly/default.nix index 81b76ab3f151c..4c8fdb2a64de1 100644 --- a/pkgs/misc/fastly/default.nix +++ b/pkgs/misc/fastly/default.nix @@ -10,13 +10,13 @@ buildGoModule rec { pname = "fastly"; - version = "10.12.2"; + version = "10.12.3"; src = fetchFromGitHub { owner = "fastly"; repo = "cli"; rev = "refs/tags/v${version}"; - hash = "sha256-2B/7XmhHo/1Y2szdXNygiK6IsmVvcdAPtOvZI/B26pw="; + hash = "sha256-rvutRCfySapyHHzU6hVUdcQ/QdC/mqjrDhx1KTJnWlE="; # The git commit is part of the `fastly version` original output; # leave that output the same in nixpkgs. Use the `.git` directory # to retrieve the commit SHA, and remove the directory afterwards, diff --git a/pkgs/misc/uboot/default.nix b/pkgs/misc/uboot/default.nix index 837070e656147..95fadc40da5fd 100644 --- a/pkgs/misc/uboot/default.nix +++ b/pkgs/misc/uboot/default.nix @@ -133,7 +133,7 @@ let homepage = "https://www.denx.de/wiki/U-Boot/"; description = "Boot loader for embedded systems"; license = licenses.gpl2; - maintainers = with maintainers; [ bartsch dezgeg samueldr lopsided98 ]; + maintainers = with maintainers; [ bartsch dezgeg lopsided98 ]; } // extraMeta; } // removeAttrs args [ "extraMeta" "pythonScriptsToInstall" ])); in { diff --git a/pkgs/os-specific/bsd/freebsd/default.nix b/pkgs/os-specific/bsd/freebsd/default.nix index e56c70c1d32d0..cfe6080b020a0 100644 --- a/pkgs/os-specific/bsd/freebsd/default.nix +++ b/pkgs/os-specific/bsd/freebsd/default.nix @@ -3,7 +3,6 @@ makeScopeWithSplicing', generateSplicesForMkScope, callPackage, - crossLibcStdenv, attributePathToSplice ? [ "freebsd" ], branch ? "release/14.0.0", }: @@ -24,41 +23,30 @@ let Branches can be selected by overriding the `branch` attribute on the freebsd package set. ''; - # `./package-set.nix` should never know the name of the package set we - # are constructing; just this function is allowed to know that. This - # is why we: - # - # - do the splicing for cross compilation here - # - # - construct the *anonymized* `buildFreebsd` attribute to be passed - # to `./package-set.nix`. - callFreeBSDWithAttrs = - extraArgs: - let - # we do not include the branch in the splice here because the branch - # parameter to this file will only ever take on one value - more values - # are provided through overrides. - otherSplices = generateSplicesForMkScope attributePathToSplice; - in - makeScopeWithSplicing' { - inherit otherSplices; - f = - self: - { - inherit branch; - } - // callPackage ./package-set.nix ( - { - sourceData = versions.${self.branch} or (throw (badBranchError self.branch)); - versionData = self.sourceData.version; - buildFreebsd = otherSplices.selfBuildHost; - patchesRoot = ./patches + "/${self.versionData.revision}"; - } - // extraArgs - ) self; - }; + # we do not include the branch in the splice here because the branch + # parameter to this file will only ever take on one value - more values + # are provided through overrides. + otherSplices = generateSplicesForMkScope attributePathToSplice; in -{ - freebsd = callFreeBSDWithAttrs { }; - freebsdCross = callFreeBSDWithAttrs { stdenv = crossLibcStdenv; }; +# `./package-set.nix` should never know the name of the package set we +# are constructing; just this function is allowed to know that. This +# is why we: +# +# - do the splicing for cross compilation here +# +# - construct the *anonymized* `buildFreebsd` attribute to be passed +# to `./package-set.nix`. +makeScopeWithSplicing' { + inherit otherSplices; + f = + self: + { + inherit branch; + } + // callPackage ./package-set.nix ({ + sourceData = versions.${self.branch} or (throw (badBranchError self.branch)); + versionData = self.sourceData.version; + buildFreebsd = otherSplices.selfBuildHost; + patchesRoot = ./patches + "/${self.versionData.revision}"; + }) self; } diff --git a/pkgs/os-specific/bsd/freebsd/pkgs/mkDerivation.nix b/pkgs/os-specific/bsd/freebsd/pkgs/mkDerivation.nix index 12f2c9407e3c2..a085367ac68e6 100644 --- a/pkgs/os-specific/bsd/freebsd/pkgs/mkDerivation.nix +++ b/pkgs/os-specific/bsd/freebsd/pkgs/mkDerivation.nix @@ -58,12 +58,9 @@ lib.makeOverridable ( HOST_SH = stdenv'.shell; - # Since STRIP below is the flag - STRIPBIN = "${stdenv.cc.bintools.targetPrefix}strip"; - makeFlags = [ "STRIP=-s" # flag to install, not command - ] ++ lib.optional (!stdenv.hostPlatform.isFreeBSD) "MK_WERROR=no"; + ] ++ lib.optional (!stdenv'.hostPlatform.isFreeBSD) "MK_WERROR=no"; # amd64 not x86_64 for this on unlike NetBSD MACHINE_ARCH = freebsd-lib.mkBsdArch stdenv'; @@ -91,6 +88,9 @@ lib.makeOverridable ( // lib.optionalAttrs stdenv'.hasCC { # TODO should CC wrapper set this? CPP = "${stdenv'.cc.targetPrefix}cpp"; + + # Since STRIP in `makeFlags` has to be a flag, not the binary itself + STRIPBIN = "${stdenv'.cc.bintools.targetPrefix}strip"; } // lib.optionalAttrs stdenv'.isDarwin { MKRELRO = "no"; } // lib.optionalAttrs (stdenv'.cc.isClang or false) { diff --git a/pkgs/os-specific/bsd/netbsd/default.nix b/pkgs/os-specific/bsd/netbsd/default.nix index 5f5ec212f2698..1a00128dcb5b8 100644 --- a/pkgs/os-specific/bsd/netbsd/default.nix +++ b/pkgs/os-specific/bsd/netbsd/default.nix @@ -1,6 +1,6 @@ { - stdenv, lib, + crossLibcStdenv, stdenvNoCC, makeScopeWithSplicing', generateSplicesForMkScope, @@ -21,7 +21,9 @@ makeScopeWithSplicing' { defaultMakeFlags = [ "MKSOFTFLOAT=${ - if stdenv.hostPlatform.gcc.float or (stdenv.hostPlatform.parsed.abi.float or "hard") == "soft" then + if + stdenvNoCC.hostPlatform.gcc.float or (stdenvNoCC.hostPlatform.parsed.abi.float or "hard") == "soft" + then "yes" else "no" @@ -30,13 +32,22 @@ makeScopeWithSplicing' { compatIfNeeded = lib.optional (!stdenvNoCC.hostPlatform.isNetBSD) self.compat; + stdenvLibcMinimal = crossLibcStdenv.override (old: { + cc = old.cc.override { + libc = self.libcMinimal; + bintools = old.cc.bintools.override { + libc = self.libcMinimal; + sharedLibraryLoader = null; + }; + }; + }); + # The manual callPackages below should in principle be unnecessary because # they're just selecting arguments that would be selected anyway. However, # if we don't perform these manual calls, we get infinite recursion issues # because of the splices. mkDerivation = self.callPackage ./pkgs/mkDerivation.nix { - inherit stdenv stdenvNoCC; inherit (buildPackages.netbsd) netbsdSetupHook makeMinimal @@ -53,14 +64,8 @@ makeScopeWithSplicing' { compat = self.callPackage ./pkgs/compat/package.nix { inherit (buildPackages) coreutils; inherit (buildPackages.darwin) cctools-port; - inherit (buildPackages.buildPackages) rsync; inherit (buildPackages.netbsd) makeMinimal; - inherit (self) - install - include - libc - libutil - ; + inherit (self) install; }; install = self.callPackage ./pkgs/install/package.nix { @@ -70,32 +75,23 @@ makeScopeWithSplicing' { make compatIfNeeded ; - inherit (buildPackages.buildPackages) rsync; inherit (buildPackages.netbsd) makeMinimal; }; # See note in pkgs/stat/package.nix stat = self.callPackage ./pkgs/stat/package.nix { inherit (buildPackages.netbsd) makeMinimal install; - inherit (buildPackages.buildPackages) rsync; }; # See note in pkgs/stat/hook.nix statHook = self.callPackage ./pkgs/stat/hook.nix { inherit (self) stat; }; - tsort = self.callPackage ./pkgs/tsort.nix { - inherit (buildPackages.netbsd) makeMinimal install; - inherit (buildPackages.buildPackages) rsync; - }; + tsort = self.callPackage ./pkgs/tsort.nix { inherit (buildPackages.netbsd) makeMinimal install; }; - lorder = self.callPackage ./pkgs/lorder.nix { - inherit (buildPackages.netbsd) makeMinimal install; - inherit (buildPackages.buildPackages) rsync; - }; + lorder = self.callPackage ./pkgs/lorder.nix { inherit (buildPackages.netbsd) makeMinimal install; }; config = self.callPackage ./pkgs/config.nix { inherit (buildPackages.netbsd) makeMinimal install; - inherit (buildPackages.buildPackages) rsync; inherit (self) cksum; }; @@ -107,7 +103,6 @@ makeScopeWithSplicing' { rpcgen ; inherit (buildPackages) stdenv; - inherit (buildPackages.buildPackages) rsync; }; sys-headers = self.callPackage ./pkgs/sys/headers.nix { @@ -121,15 +116,23 @@ makeScopeWithSplicing' { config genassym ; - inherit (buildPackages.buildPackages) rsync; }; - libutil = self.callPackage ./pkgs/libutil.nix { inherit (self) libc sys; }; + libutil = self.callPackage ./pkgs/libutil.nix { + inherit (buildPackages.netbsd) + netbsdSetupHook + makeMinimal + install + lorder + tsort + statHook + ; + }; libpthread-headers = self.callPackage ./pkgs/libpthread/headers.nix { }; csu = self.callPackage ./pkgs/csu.nix { - inherit (self) headers sys ld_elf_so; + inherit (self) headers sys-headers ld_elf_so; inherit (buildPackages.netbsd) netbsdSetupHook makeMinimal @@ -140,25 +143,10 @@ makeScopeWithSplicing' { tsort statHook ; - inherit (buildPackages.buildPackages) rsync; }; - _mainLibcExtraPaths = [ - "common" - "lib/i18n_module" - "lib/libcrypt" - "lib/libm" - "lib/libpthread" - "lib/libresolv" - "lib/librpcsvc" - "lib/librt" - "lib/libutil" - "libexec/ld.elf_so" - "sys" - ]; - - libc = self.callPackage ./pkgs/libc.nix { - inherit (self) headers csu librt; + libcMinimal = self.callPackage ./pkgs/libcMinimal.nix { + inherit (self) headers csu; inherit (buildPackages.netbsd) netbsdSetupHook makeMinimal @@ -170,7 +158,18 @@ makeScopeWithSplicing' { statHook rpcgen ; - inherit (buildPackages.buildPackages) rsync; + }; + + librpcsvc = self.callPackage ./pkgs/librpcsvc.nix { + inherit (buildPackages.netbsd) + netbsdSetupHook + makeMinimal + install + lorder + tsort + statHook + rpcgen + ; }; mtree = self.callPackage ./pkgs/mtree.nix { inherit (self) mknod; }; diff --git a/pkgs/os-specific/bsd/netbsd/pkgs/compat/libbsd-overlay.pc b/pkgs/os-specific/bsd/netbsd/pkgs/compat/libbsd-overlay.pc index 3aadabe508822..086dd62303e96 100644 --- a/pkgs/os-specific/bsd/netbsd/pkgs/compat/libbsd-overlay.pc +++ b/pkgs/os-specific/bsd/netbsd/pkgs/compat/libbsd-overlay.pc @@ -1,7 +1,7 @@ prefix=@out@ exec_prefix=${prefix} libdir=${exec_prefix}/lib -includedir=${prefix}/include +includedir=@includedir@ Name: nbcompat Description: NetBSD compatibility framework diff --git a/pkgs/os-specific/bsd/netbsd/pkgs/compat/package.nix b/pkgs/os-specific/bsd/netbsd/pkgs/compat/package.nix index 91a2bb8755c89..0f7483ce55ad1 100644 --- a/pkgs/os-specific/bsd/netbsd/pkgs/compat/package.nix +++ b/pkgs/os-specific/bsd/netbsd/pkgs/compat/package.nix @@ -6,15 +6,10 @@ defaultMakeFlags, coreutils, cctools-port, - include, - libc, - libutil, install, bsdSetupHook, netbsdSetupHook, makeMinimal, - rsync, - _mainLibcExtraPaths, version, }: @@ -25,6 +20,11 @@ mkDerivation ( { path = "tools/compat"; + outputs = [ + "out" + "dev" + ]; + setupHooks = [ ../../../../../build-support/setup-hooks/role.bash ./compat-setup-hook.sh @@ -52,7 +52,6 @@ mkDerivation ( bsdSetupHook netbsdSetupHook makeMinimal - rsync ]; buildInputs = commonDeps; @@ -63,7 +62,7 @@ mkDerivation ( defaultMakeFlags ++ [ "INSTALL=${coreutils}/bin/install" - "DATADIR=$(out)/share" + "DATADIR=$(dev)/share" # Can't sort object files yet "LORDER=echo" "TSORT=cat" @@ -96,46 +95,47 @@ mkDerivation ( postInstall = '' # why aren't these installed by netbsd? - install -D compat_defs.h $out/include/compat_defs.h - install -D $BSDSRCDIR/include/cdbw.h $out/include/cdbw.h - install -D $BSDSRCDIR/sys/sys/cdbr.h $out/include/cdbr.h + install -D compat_defs.h $dev/include/compat_defs.h + install -D $BSDSRCDIR/include/cdbw.h $dev/include/cdbw.h + install -D $BSDSRCDIR/sys/sys/cdbr.h $dev/include/cdbr.h install -D $BSDSRCDIR/sys/sys/featuretest.h \ - $out/include/sys/featuretest.h - install -D $BSDSRCDIR/sys/sys/md5.h $out/include/md5.h - install -D $BSDSRCDIR/sys/sys/rmd160.h $out/include/rmd160.h - install -D $BSDSRCDIR/sys/sys/sha1.h $out/include/sha1.h - install -D $BSDSRCDIR/sys/sys/sha2.h $out/include/sha2.h - install -D $BSDSRCDIR/sys/sys/queue.h $out/include/sys/queue.h - install -D $BSDSRCDIR/include/vis.h $out/include/vis.h - install -D $BSDSRCDIR/include/db.h $out/include/db.h - install -D $BSDSRCDIR/include/netconfig.h $out/include/netconfig.h - install -D $BSDSRCDIR/include/utmpx.h $out/include/utmpx.h - install -D $BSDSRCDIR/include/tzfile.h $out/include/tzfile.h - install -D $BSDSRCDIR/sys/sys/tree.h $out/include/sys/tree.h - install -D $BSDSRCDIR/include/nl_types.h $out/include/nl_types.h - install -D $BSDSRCDIR/include/stringlist.h $out/include/stringlist.h + $dev/include/sys/featuretest.h + install -D $BSDSRCDIR/sys/sys/md5.h $dev/include/md5.h + install -D $BSDSRCDIR/sys/sys/rmd160.h $dev/include/rmd160.h + install -D $BSDSRCDIR/sys/sys/sha1.h $dev/include/sha1.h + install -D $BSDSRCDIR/sys/sys/sha2.h $dev/include/sha2.h + install -D $BSDSRCDIR/sys/sys/queue.h $dev/include/sys/queue.h + install -D $BSDSRCDIR/include/vis.h $dev/include/vis.h + install -D $BSDSRCDIR/include/db.h $dev/include/db.h + install -D $BSDSRCDIR/include/netconfig.h $dev/include/netconfig.h + install -D $BSDSRCDIR/include/utmpx.h $dev/include/utmpx.h + install -D $BSDSRCDIR/include/tzfile.h $dev/include/tzfile.h + install -D $BSDSRCDIR/sys/sys/tree.h $dev/include/sys/tree.h + install -D $BSDSRCDIR/include/nl_types.h $dev/include/nl_types.h + install -D $BSDSRCDIR/include/stringlist.h $dev/include/stringlist.h # Collapse includes slightly to fix dangling reference - install -D $BSDSRCDIR/common/include/rpc/types.h $out/include/rpc/types.h - sed -i '1s;^;#include "nbtool_config.h"\n;' $out/include/rpc/types.h + install -D $BSDSRCDIR/common/include/rpc/types.h $dev/include/rpc/types.h + sed -i '1s;^;#include "nbtool_config.h"\n;' $dev/include/rpc/types.h '' + lib.optionalString stdenv.isDarwin '' - mkdir -p $out/include/ssp - touch $out/include/ssp/ssp.h + mkdir -p $dev/include/ssp + touch $dev/include/ssp/ssp.h '' + '' - mkdir -p $out/lib/pkgconfig - substitute ${./libbsd-overlay.pc} $out/lib/pkgconfig/libbsd-overlay.pc \ - --subst-var-by out $out \ + mkdir -p $dev/lib/pkgconfig + substitute ${./libbsd-overlay.pc} $dev/lib/pkgconfig/libbsd-overlay.pc \ + --subst-var-by out "$out" \ + --subst-var-by includedir "$dev/include" \ --subst-var-by version ${version} ''; extraPaths = [ - include.path - libc.path - libutil.path + "common" + "include" + "lib/libc" + "lib/libutil" "external/bsd/flex" "sys/sys" - "common/include/rpc/types.h" - ] ++ libutil.extraPaths ++ _mainLibcExtraPaths; + ]; } ) diff --git a/pkgs/os-specific/bsd/netbsd/pkgs/config.nix b/pkgs/os-specific/bsd/netbsd/pkgs/config.nix index 272e9065b29b7..94a014a189cf4 100644 --- a/pkgs/os-specific/bsd/netbsd/pkgs/config.nix +++ b/pkgs/os-specific/bsd/netbsd/pkgs/config.nix @@ -7,7 +7,6 @@ mandoc, byacc, flex, - rsync, compatIfNeeded, cksum, }: @@ -22,7 +21,6 @@ mkDerivation { mandoc byacc flex - rsync ]; buildInputs = compatIfNeeded; extraPaths = [ cksum.path ]; diff --git a/pkgs/os-specific/bsd/netbsd/pkgs/csu.nix b/pkgs/os-specific/bsd/netbsd/pkgs/csu.nix index a0d7ca419c1c4..c6e0de8edd117 100644 --- a/pkgs/os-specific/bsd/netbsd/pkgs/csu.nix +++ b/pkgs/os-specific/bsd/netbsd/pkgs/csu.nix @@ -14,13 +14,13 @@ lorder, tsort, statHook, - rsync, headers, - sys, + sys-headers, ld_elf_so, }: mkDerivation { + noLibc = true; path = "lib/csu"; meta.platforms = lib.platforms.netbsd; nativeBuildInputs = [ @@ -37,11 +37,10 @@ mkDerivation { lorder tsort statHook - rsync ]; buildInputs = [ headers ]; extraPaths = [ - sys.path + sys-headers.path ld_elf_so.path ]; } diff --git a/pkgs/os-specific/bsd/netbsd/pkgs/fts/package.nix b/pkgs/os-specific/bsd/netbsd/pkgs/fts/package.nix index 57fc0633b0886..3201a1c0e082a 100644 --- a/pkgs/os-specific/bsd/netbsd/pkgs/fts/package.nix +++ b/pkgs/os-specific/bsd/netbsd/pkgs/fts/package.nix @@ -2,7 +2,6 @@ mkDerivation, bsdSetupHook, netbsdSetupHook, - rsync, compatIfNeeded, }: @@ -12,7 +11,6 @@ mkDerivation { nativeBuildInputs = [ bsdSetupHook netbsdSetupHook - rsync ]; propagatedBuildInputs = compatIfNeeded; extraPaths = [ diff --git a/pkgs/os-specific/bsd/netbsd/pkgs/i18n_module.nix b/pkgs/os-specific/bsd/netbsd/pkgs/i18n_module.nix index 066d9f236f9bf..9504ac22a74ed 100644 --- a/pkgs/os-specific/bsd/netbsd/pkgs/i18n_module.nix +++ b/pkgs/os-specific/bsd/netbsd/pkgs/i18n_module.nix @@ -1,11 +1,20 @@ { lib, + stdenvLibcMinimal, mkDerivation, - libc, + libcMinimal, }: mkDerivation { path = "lib/i18n_module"; + + libcMinimal = true; + + # Hack around GCC's limits.h missing the include_next we want See + # https://gcc.gnu.org/legacy-ml/gcc/2003-10/msg01278.html + NIX_CFLAGS_COMPILE_BEFORE = "-isystem ${stdenvLibcMinimal.cc.libc.dev}/include"; + + extraPaths = [ libcMinimal.path ]; + meta.platforms = lib.platforms.netbsd; - extraPaths = [ libc.path ]; } diff --git a/pkgs/os-specific/bsd/netbsd/pkgs/include.nix b/pkgs/os-specific/bsd/netbsd/pkgs/include.nix index 6df34b96095e7..1048016b81e2f 100644 --- a/pkgs/os-specific/bsd/netbsd/pkgs/include.nix +++ b/pkgs/os-specific/bsd/netbsd/pkgs/include.nix @@ -7,7 +7,6 @@ install, mandoc, groff, - rsync, nbperf, rpcgen, defaultMakeFlags, @@ -15,6 +14,7 @@ }: mkDerivation { + noLibc = true; path = "include"; nativeBuildInputs = [ bsdSetupHook @@ -23,7 +23,6 @@ mkDerivation { install mandoc groff - rsync nbperf rpcgen ]; diff --git a/pkgs/os-specific/bsd/netbsd/pkgs/install/package.nix b/pkgs/os-specific/bsd/netbsd/pkgs/install/package.nix index 2dbec08f15e85..fa8bb690075f1 100644 --- a/pkgs/os-specific/bsd/netbsd/pkgs/install/package.nix +++ b/pkgs/os-specific/bsd/netbsd/pkgs/install/package.nix @@ -8,7 +8,6 @@ makeMinimal, mandoc, groff, - rsync, compatIfNeeded, fts, @@ -36,7 +35,6 @@ mkDerivation { makeMinimal mandoc groff - rsync ]; skipIncludesPhase = true; buildInputs = diff --git a/pkgs/os-specific/bsd/netbsd/pkgs/ld_elf_so.nix b/pkgs/os-specific/bsd/netbsd/pkgs/ld_elf_so.nix index 7f25ce097ff0d..900b87967927c 100644 --- a/pkgs/os-specific/bsd/netbsd/pkgs/ld_elf_so.nix +++ b/pkgs/os-specific/bsd/netbsd/pkgs/ld_elf_so.nix @@ -1,20 +1,24 @@ { lib, mkDerivation, - libc, + libcMinimal, defaultMakeFlags, }: mkDerivation { + noLibc = true; path = "libexec/ld.elf_so"; meta.platforms = lib.platforms.netbsd; - LIBC_PIC = "${libc}/lib/libc_pic.a"; + LIBC_PIC = "${libcMinimal}/lib/libc_pic.a"; # Hack to prevent a symlink being installed here for compatibility. SHLINKINSTALLDIR = "/usr/libexec"; USE_FORT = "yes"; makeFlags = defaultMakeFlags ++ [ "BINDIR=$(out)/libexec" - "CLIBOBJ=${libc}/lib" + "CLIBOBJ=${libcMinimal}/lib" + ]; + extraPaths = [ + libcMinimal.path + "sys" ]; - extraPaths = [ libc.path ] ++ libc.extraPaths; } diff --git a/pkgs/os-specific/bsd/netbsd/pkgs/libc.nix b/pkgs/os-specific/bsd/netbsd/pkgs/libc.nix index cf71857776d83..665c9ce8ec8be 100644 --- a/pkgs/os-specific/bsd/netbsd/pkgs/libc.nix +++ b/pkgs/os-specific/bsd/netbsd/pkgs/libc.nix @@ -1,98 +1,52 @@ { lib, - mkDerivation, - defaultMakeFlags, - _mainLibcExtraPaths, - bsdSetupHook, - netbsdSetupHook, - makeMinimal, - install, - mandoc, - groff, - flex, - byacc, - genassym, - gencat, - lorder, - tsort, - statHook, - rsync, - rpcgen, - csu, - headers, + symlinkJoin, + libcMinimal, + libpthread, + libm, + libresolv, + librpcsvc, + i18n_module, + libutil, librt, + libcrypt, + version, }: -mkDerivation { - path = "lib/libc"; - USE_FORT = "yes"; - MKPROFILE = "no"; - extraPaths = _mainLibcExtraPaths ++ [ "external/bsd/jemalloc" ]; - nativeBuildInputs = [ - bsdSetupHook - netbsdSetupHook - makeMinimal - install - mandoc - groff - flex - byacc - genassym - gencat - lorder - tsort - statHook - rsync - rpcgen - ]; - buildInputs = [ - headers - csu - ]; - env.NIX_CFLAGS_COMPILE = "-B${csu}/lib -fcommon"; - meta.platforms = lib.platforms.netbsd; - SHLIBINSTALLDIR = "$(out)/lib"; - MKPICINSTALL = "yes"; - NLSDIR = "$(out)/share/nls"; - makeFlags = defaultMakeFlags ++ [ "FILESDIR=$(out)/var/db" ]; - postInstall = '' - pushd ${headers} - find . -type d -exec mkdir -p $out/\{} \; - find . \( -type f -o -type l \) -exec cp -pr \{} $out/\{} \; - popd - - pushd ${csu} - find . -type d -exec mkdir -p $out/\{} \; - find . \( -type f -o -type l \) -exec cp -pr \{} $out/\{} \; - popd - - NIX_CFLAGS_COMPILE+=" -B$out/lib" - NIX_CFLAGS_COMPILE+=" -I$out/include" - NIX_LDFLAGS+=" -L$out/lib" - - make -C $BSDSRCDIR/lib/libpthread $makeFlags - make -C $BSDSRCDIR/lib/libpthread $makeFlags install - - make -C $BSDSRCDIR/lib/libm $makeFlags - make -C $BSDSRCDIR/lib/libm $makeFlags install +symlinkJoin rec { + name = "${pname}-${version}"; + pname = "libc-netbsd"; + inherit version; - make -C $BSDSRCDIR/lib/libresolv $makeFlags - make -C $BSDSRCDIR/lib/libresolv $makeFlags install - - make -C $BSDSRCDIR/lib/librpcsvc $makeFlags - make -C $BSDSRCDIR/lib/librpcsvc $makeFlags install - - make -C $BSDSRCDIR/lib/i18n_module $makeFlags - make -C $BSDSRCDIR/lib/i18n_module $makeFlags install - - make -C $BSDSRCDIR/lib/libutil $makeFlags - make -C $BSDSRCDIR/lib/libutil $makeFlags install - - make -C $BSDSRCDIR/lib/librt $makeFlags - make -C $BSDSRCDIR/lib/librt $makeFlags install + outputs = [ + "out" + "dev" + "man" + ]; - make -C $BSDSRCDIR/lib/libcrypt $makeFlags - make -C $BSDSRCDIR/lib/libcrypt $makeFlags install + paths = + lib.concatMap + (p: [ + (lib.getDev p) + (lib.getLib p) + (lib.getMan p) + ]) + [ + libcMinimal + libm + libpthread + libresolv + librpcsvc + i18n_module + libutil + librt + libcrypt + ]; + + postBuild = '' + rm -r "$out/nix-support" + fixupPhase ''; - inherit (librt) postPatch; + + meta.platforms = lib.platforms.netbsd; } diff --git a/pkgs/os-specific/bsd/netbsd/pkgs/libcMinimal.nix b/pkgs/os-specific/bsd/netbsd/pkgs/libcMinimal.nix new file mode 100644 index 0000000000000..bbab20d53d51e --- /dev/null +++ b/pkgs/os-specific/bsd/netbsd/pkgs/libcMinimal.nix @@ -0,0 +1,85 @@ +{ + lib, + mkDerivation, + defaultMakeFlags, + bsdSetupHook, + netbsdSetupHook, + makeMinimal, + install, + mandoc, + groff, + flex, + byacc, + genassym, + gencat, + lorder, + tsort, + statHook, + rpcgen, + csu, + headers, +}: + +mkDerivation { + noLibc = true; + path = "lib/libc"; + pname = "libcMinimal-netbsd"; + outputs = [ + "out" + "dev" + "man" + "tags" + ]; + USE_FORT = "yes"; + MKPROFILE = "no"; + extraPaths = [ + "common" + "lib/i18n_module" + "libexec/ld.elf_so" + "sys" + "external/bsd/jemalloc" + ]; + nativeBuildInputs = [ + bsdSetupHook + netbsdSetupHook + makeMinimal + install + mandoc + groff + flex + byacc + genassym + gencat + lorder + tsort + statHook + rpcgen + ]; + buildInputs = [ + headers + csu + ]; + env.NIX_CFLAGS_COMPILE = "-B${csu}/lib -fcommon"; + meta.platforms = lib.platforms.netbsd; + SHLIBINSTALLDIR = "$(out)/lib"; + MKPICINSTALL = "yes"; + NLSDIR = "$(out)/share/nls"; + makeFlags = defaultMakeFlags ++ [ "FILESDIR=$(out)/var/db" ]; + postInstall = '' + pushd ${headers} + find include -type d -exec mkdir -p "$dev/{}" ';' + find include '(' -type f -o -type l ')' -exec cp -pr "{}" "$dev/{}" ';' + popd + + pushd ${csu} + find lib -type d -exec mkdir -p "$out/{}" ';' + find lib '(' -type f -o -type l ')' -exec cp -pr "{}" "$out/{}" ';' + popd + + moveToOutput var/db/libc.tags "$tags" + ''; + + postPatch = '' + sed -i 's,/usr\(/include/sys/syscall.h\),${headers}\1,g' lib/lib*/sys/Makefile.inc + ''; +} diff --git a/pkgs/os-specific/bsd/netbsd/pkgs/libcrypt.nix b/pkgs/os-specific/bsd/netbsd/pkgs/libcrypt.nix index abcb2cfb14fb8..f51dec0f68af2 100644 --- a/pkgs/os-specific/bsd/netbsd/pkgs/libcrypt.nix +++ b/pkgs/os-specific/bsd/netbsd/pkgs/libcrypt.nix @@ -2,6 +2,14 @@ mkDerivation { path = "lib/libcrypt"; + + libcMinimal = true; + + outputs = [ + "out" + "man" + ]; + SHLIBINSTALLDIR = "$(out)/lib"; meta.platforms = lib.platforms.netbsd; } diff --git a/pkgs/os-specific/bsd/netbsd/pkgs/libm.nix b/pkgs/os-specific/bsd/netbsd/pkgs/libm.nix index 8a2304cacbca1..f010c808c4843 100644 --- a/pkgs/os-specific/bsd/netbsd/pkgs/libm.nix +++ b/pkgs/os-specific/bsd/netbsd/pkgs/libm.nix @@ -1,12 +1,18 @@ -{ - lib, - mkDerivation, - sys, -}: +{ lib, mkDerivation }: mkDerivation { path = "lib/libm"; + + libcMinimal = true; + + outputs = [ + "out" + "man" + ]; + SHLIBINSTALLDIR = "$(out)/lib"; + + extraPaths = [ "sys" ]; + meta.platforms = lib.platforms.netbsd; - extraPaths = [ sys.path ]; } diff --git a/pkgs/os-specific/bsd/netbsd/pkgs/libpthread/package.nix b/pkgs/os-specific/bsd/netbsd/pkgs/libpthread/package.nix index 28665b351f88a..2aa5a8f54066a 100644 --- a/pkgs/os-specific/bsd/netbsd/pkgs/libpthread/package.nix +++ b/pkgs/os-specific/bsd/netbsd/pkgs/libpthread/package.nix @@ -1,27 +1,37 @@ { lib, + stdenvLibcMinimal, mkDerivation, headers, - libc, + libcMinimal, librt, - sys, }: mkDerivation ( import ./base.nix // { - pname = "libpthread"; - installPhase = null; - noCC = false; - dontBuild = false; - buildInputs = [ headers ]; + + libcMinimal = true; + + outputs = [ + "out" + "dev" + "man" + ]; + SHLIBINSTALLDIR = "$(out)/lib"; + + # Hack around GCC's limits.h missing the include_next we want See + # https://gcc.gnu.org/legacy-ml/gcc/2003-10/msg01278.html + NIX_CFLAGS_COMPILE_BEFORE = "-isystem ${stdenvLibcMinimal.cc.libc.dev}/include"; + extraPaths = [ "common" - libc.path + libcMinimal.path librt.path - sys.path + "sys" ]; + meta.platforms = lib.platforms.netbsd; } ) diff --git a/pkgs/os-specific/bsd/netbsd/pkgs/libresolv.nix b/pkgs/os-specific/bsd/netbsd/pkgs/libresolv.nix index 7db4948e6939b..63e95de850c09 100644 --- a/pkgs/os-specific/bsd/netbsd/pkgs/libresolv.nix +++ b/pkgs/os-specific/bsd/netbsd/pkgs/libresolv.nix @@ -1,11 +1,15 @@ { lib, mkDerivation, - libc, + libcMinimal, }: mkDerivation { path = "lib/libresolv"; + + libcMinimal = true; + + extraPaths = [ libcMinimal.path ]; + meta.platforms = lib.platforms.netbsd; - extraPaths = [ libc.path ]; } diff --git a/pkgs/os-specific/bsd/netbsd/pkgs/librpcsvc.nix b/pkgs/os-specific/bsd/netbsd/pkgs/librpcsvc.nix index 3f2d392ba8c5d..60609ed134fb7 100644 --- a/pkgs/os-specific/bsd/netbsd/pkgs/librpcsvc.nix +++ b/pkgs/os-specific/bsd/netbsd/pkgs/librpcsvc.nix @@ -14,8 +14,14 @@ mkDerivation { path = "lib/librpcsvc"; - makeFlags = defaultMakeFlags ++ [ "INCSDIR=$(out)/include/rpcsvc" ]; - meta.platforms = lib.platforms.netbsd; + + libcMinimal = true; + + outputs = [ + "out" + "dev" + ]; + nativeBuildInputs = [ bsdSetupHook netbsdSetupHook @@ -26,4 +32,8 @@ mkDerivation { rpcgen statHook ]; + + makeFlags = defaultMakeFlags ++ [ "INCSDIR=$(dev)/include/rpcsvc" ]; + + meta.platforms = lib.platforms.netbsd; } diff --git a/pkgs/os-specific/bsd/netbsd/pkgs/librt.nix b/pkgs/os-specific/bsd/netbsd/pkgs/librt.nix index 4e4bf0bc5ac4b..c69062d9e87df 100644 --- a/pkgs/os-specific/bsd/netbsd/pkgs/librt.nix +++ b/pkgs/os-specific/bsd/netbsd/pkgs/librt.nix @@ -1,16 +1,22 @@ { lib, mkDerivation, - libc, - headers, + libcMinimal, }: mkDerivation { path = "lib/librt"; + + libcMinimal = true; + + outputs = [ + "out" + "man" + ]; + + extraPaths = [ libcMinimal.path ] ++ libcMinimal.extraPaths; + + inherit (libcMinimal) postPatch; + meta.platforms = lib.platforms.netbsd; - extraPaths = [ libc.path ] ++ libc.extraPaths; - postPatch = '' - sed -i 's,/usr\(/include/sys/syscall.h\),${headers}\1,g' \ - $BSDSRCDIR/lib/{libc,librt}/sys/Makefile.inc - ''; } diff --git a/pkgs/os-specific/bsd/netbsd/pkgs/libterminfo.nix b/pkgs/os-specific/bsd/netbsd/pkgs/libterminfo.nix index 6e7b59df2ed5e..c02410a52ed2a 100644 --- a/pkgs/os-specific/bsd/netbsd/pkgs/libterminfo.nix +++ b/pkgs/os-specific/bsd/netbsd/pkgs/libterminfo.nix @@ -10,7 +10,6 @@ statHook, nbperf, tic, - rsync, compatIfNeeded, }: @@ -27,7 +26,6 @@ mkDerivation { statHook nbperf tic - rsync ]; buildInputs = compatIfNeeded; SHLIBINSTALLDIR = "$(out)/lib"; diff --git a/pkgs/os-specific/bsd/netbsd/pkgs/libutil.nix b/pkgs/os-specific/bsd/netbsd/pkgs/libutil.nix index d5bf075fc5e7d..c217f6a7ce465 100644 --- a/pkgs/os-specific/bsd/netbsd/pkgs/libutil.nix +++ b/pkgs/os-specific/bsd/netbsd/pkgs/libutil.nix @@ -1,7 +1,7 @@ { + lib, + stdenvLibcMinimal, mkDerivation, - libc, - sys, bsdSetupHook, netbsdSetupHook, makeMinimal, @@ -11,17 +11,19 @@ lorder, mandoc, statHook, - rsync, headers, }: mkDerivation { path = "lib/libutil"; - extraPaths = [ - "common" - libc.path - sys.path + + libcMinimal = true; + + outputs = [ + "out" + "man" ]; + nativeBuildInputs = [ bsdSetupHook netbsdSetupHook @@ -32,8 +34,19 @@ mkDerivation { lorder mandoc statHook - rsync ]; - buildInputs = [ headers ]; + SHLIBINSTALLDIR = "$(out)/lib"; + + # Hack around GCC's limits.h missing the include_next we want See + # https://gcc.gnu.org/legacy-ml/gcc/2003-10/msg01278.html + NIX_CFLAGS_COMPILE_BEFORE = "-isystem ${stdenvLibcMinimal.cc.libc.dev}/include"; + + extraPaths = [ + "common" + "lib/libc" + "sys" + ]; + + meta.platforms = lib.platforms.netbsd; } diff --git a/pkgs/os-specific/bsd/netbsd/pkgs/lorder.nix b/pkgs/os-specific/bsd/netbsd/pkgs/lorder.nix index 836fa7500e579..b10b8caee2ff2 100644 --- a/pkgs/os-specific/bsd/netbsd/pkgs/lorder.nix +++ b/pkgs/os-specific/bsd/netbsd/pkgs/lorder.nix @@ -6,7 +6,6 @@ install, mandoc, groff, - rsync, }: mkDerivation { @@ -18,6 +17,5 @@ mkDerivation { install mandoc groff - rsync ]; } diff --git a/pkgs/os-specific/bsd/netbsd/pkgs/make-rules.nix b/pkgs/os-specific/bsd/netbsd/pkgs/make-rules.nix index a1e8d1482c215..e16027b535fca 100644 --- a/pkgs/os-specific/bsd/netbsd/pkgs/make-rules.nix +++ b/pkgs/os-specific/bsd/netbsd/pkgs/make-rules.nix @@ -4,7 +4,6 @@ stdenv, bsdSetupHook, netbsdSetupHook, - rsync, }: mkDerivation { @@ -15,7 +14,6 @@ mkDerivation { nativeBuildInputs = [ bsdSetupHook netbsdSetupHook - rsync ]; dontBuild = true; diff --git a/pkgs/os-specific/bsd/netbsd/pkgs/makeMinimal.nix b/pkgs/os-specific/bsd/netbsd/pkgs/makeMinimal.nix index ad70b6b8cd072..aab6e7f2b0dfe 100644 --- a/pkgs/os-specific/bsd/netbsd/pkgs/makeMinimal.nix +++ b/pkgs/os-specific/bsd/netbsd/pkgs/makeMinimal.nix @@ -2,7 +2,6 @@ mkDerivation, bsdSetupHook, netbsdSetupHook, - rsync, make, make-rules, }: @@ -14,7 +13,6 @@ mkDerivation { nativeBuildInputs = [ bsdSetupHook netbsdSetupHook - rsync ]; skipIncludesPhase = true; diff --git a/pkgs/os-specific/bsd/netbsd/pkgs/mkDerivation.nix b/pkgs/os-specific/bsd/netbsd/pkgs/mkDerivation.nix index f4f103087587d..8605bfbfcebe2 100644 --- a/pkgs/os-specific/bsd/netbsd/pkgs/mkDerivation.nix +++ b/pkgs/os-specific/bsd/netbsd/pkgs/mkDerivation.nix @@ -3,6 +3,7 @@ stdenv, stdenvNoCC, crossLibcStdenv, + stdenvLibcMinimal, runCommand, rsync, source, @@ -23,7 +24,15 @@ lib.makeOverridable ( attrs: let - stdenv' = if attrs.noCC or false then stdenvNoCC else stdenv; + stdenv' = + if attrs.noCC or false then + stdenvNoCC + else if attrs.noLibc or false then + crossLibcStdenv + else if attrs.libcMinimal or false then + stdenvLibcMinimal + else + stdenv; in stdenv'.mkDerivation ( rec { @@ -53,7 +62,6 @@ lib.makeOverridable ( mandoc groff statHook - rsync ]; buildInputs = compatIfNeeded; diff --git a/pkgs/os-specific/bsd/netbsd/pkgs/stat/package.nix b/pkgs/os-specific/bsd/netbsd/pkgs/stat/package.nix index 522a7a1837b18..f55bab160bc2c 100644 --- a/pkgs/os-specific/bsd/netbsd/pkgs/stat/package.nix +++ b/pkgs/os-specific/bsd/netbsd/pkgs/stat/package.nix @@ -6,7 +6,6 @@ install, mandoc, groff, - rsync, }: # Don't add this to nativeBuildInputs directly. @@ -21,6 +20,5 @@ mkDerivation { install mandoc groff - rsync ]; } diff --git a/pkgs/os-specific/bsd/netbsd/pkgs/sys/base.nix b/pkgs/os-specific/bsd/netbsd/pkgs/sys/base.nix index 6a6f8a5032768..116aa46e73503 100644 --- a/pkgs/os-specific/bsd/netbsd/pkgs/sys/base.nix +++ b/pkgs/os-specific/bsd/netbsd/pkgs/sys/base.nix @@ -9,7 +9,6 @@ tsort, lorder, statHook, - rsync, uudecode, config, genassym, @@ -53,7 +52,6 @@ tsort lorder statHook - rsync uudecode config genassym diff --git a/pkgs/os-specific/bsd/netbsd/pkgs/sys/headers.nix b/pkgs/os-specific/bsd/netbsd/pkgs/sys/headers.nix index 65fabedfcb457..d19d9d86cb382 100644 --- a/pkgs/os-specific/bsd/netbsd/pkgs/sys/headers.nix +++ b/pkgs/os-specific/bsd/netbsd/pkgs/sys/headers.nix @@ -9,7 +9,6 @@ tsort, lorder, statHook, - rsync, uudecode, config, genassym, @@ -28,7 +27,6 @@ let tsort lorder statHook - rsync uudecode config genassym diff --git a/pkgs/os-specific/bsd/netbsd/pkgs/sys/package.nix b/pkgs/os-specific/bsd/netbsd/pkgs/sys/package.nix index cb691dc87855d..0bdd83126bcf7 100644 --- a/pkgs/os-specific/bsd/netbsd/pkgs/sys/package.nix +++ b/pkgs/os-specific/bsd/netbsd/pkgs/sys/package.nix @@ -9,7 +9,6 @@ tsort, lorder, statHook, - rsync, uudecode, config, genassym, @@ -28,7 +27,6 @@ let tsort lorder statHook - rsync uudecode config genassym diff --git a/pkgs/os-specific/bsd/netbsd/pkgs/tic.nix b/pkgs/os-specific/bsd/netbsd/pkgs/tic.nix index f71df930ce1c3..42772d1d71285 100644 --- a/pkgs/os-specific/bsd/netbsd/pkgs/tic.nix +++ b/pkgs/os-specific/bsd/netbsd/pkgs/tic.nix @@ -7,7 +7,6 @@ mandoc, groff, nbperf, - rsync, compatIfNeeded, defaultMakeFlags, libterminfo, @@ -25,7 +24,6 @@ mkDerivation { mandoc groff nbperf - rsync ]; makeFlags = defaultMakeFlags ++ [ "TOOLDIR=$(out)" ]; extraPaths = [ diff --git a/pkgs/os-specific/bsd/netbsd/pkgs/tsort.nix b/pkgs/os-specific/bsd/netbsd/pkgs/tsort.nix index b1ab320da0c8f..c844e48b4412a 100644 --- a/pkgs/os-specific/bsd/netbsd/pkgs/tsort.nix +++ b/pkgs/os-specific/bsd/netbsd/pkgs/tsort.nix @@ -6,7 +6,6 @@ install, mandoc, groff, - rsync, }: mkDerivation { @@ -18,6 +17,5 @@ mkDerivation { install mandoc groff - rsync ]; } diff --git a/pkgs/os-specific/bsd/openbsd/default.nix b/pkgs/os-specific/bsd/openbsd/default.nix index 00dba195b92f5..bfc88f097865f 100644 --- a/pkgs/os-specific/bsd/openbsd/default.nix +++ b/pkgs/os-specific/bsd/openbsd/default.nix @@ -1,16 +1,17 @@ { - stdenv, lib, - stdenvNoCC, makeScopeWithSplicing', generateSplicesForMkScope, - pkgs, buildPackages, - netbsd, }: -makeScopeWithSplicing' { +let otherSplices = generateSplicesForMkScope "openbsd"; + buildOpenbsd = otherSplices.selfBuildHost; +in + +makeScopeWithSplicing' { + inherit otherSplices; f = ( self: lib.packagesFromDirectoryRecursive { @@ -19,8 +20,8 @@ makeScopeWithSplicing' { } // { libc = self.callPackage ./pkgs/libc/package.nix { - inherit (self) csu include lorder; - inherit (buildPackages.openbsd) makeMinimal; + inherit (self) csu include; + inherit (buildOpenbsd) makeMinimal; inherit (buildPackages.netbsd) install gencat @@ -30,16 +31,16 @@ makeScopeWithSplicing' { }; makeMinimal = buildPackages.netbsd.makeMinimal.override { inherit (self) make-rules; }; mkDerivation = self.callPackage ./pkgs/mkDerivation.nix { - inherit stdenv; inherit (buildPackages.netbsd) install; + inherit (buildPackages.buildPackages) rsync; }; include = self.callPackage ./pkgs/include/package.nix { - inherit (buildPackages.openbsd) makeMinimal; + inherit (buildOpenbsd) makeMinimal; inherit (buildPackages.netbsd) install rpcgen mtree; }; csu = self.callPackage ./pkgs/csu.nix { inherit (self) include; - inherit (buildPackages.openbsd) makeMinimal; + inherit (buildOpenbsd) makeMinimal; inherit (buildPackages.netbsd) install; }; make-rules = self.callPackage ./pkgs/make-rules/package.nix { }; diff --git a/pkgs/os-specific/bsd/openbsd/pkgs/csu.nix b/pkgs/os-specific/bsd/openbsd/pkgs/csu.nix index a2b2153a729b1..03a7180425684 100644 --- a/pkgs/os-specific/bsd/openbsd/pkgs/csu.nix +++ b/pkgs/os-specific/bsd/openbsd/pkgs/csu.nix @@ -9,6 +9,7 @@ }: mkDerivation { + noLibc = true; path = "lib/csu"; nativeBuildInputs = [ bsdSetupHook diff --git a/pkgs/os-specific/bsd/openbsd/pkgs/libc/package.nix b/pkgs/os-specific/bsd/openbsd/pkgs/libc/package.nix index cf233c827840a..1a6b6d06a1936 100644 --- a/pkgs/os-specific/bsd/openbsd/pkgs/libc/package.nix +++ b/pkgs/os-specific/bsd/openbsd/pkgs/libc/package.nix @@ -1,6 +1,6 @@ { lib, - stdenv, + crossLibcStdenv, mkDerivation, bsdSetupHook, openbsdSetupHook, @@ -10,7 +10,6 @@ byacc, gencat, rpcgen, - lorder, csu, include, ctags, @@ -19,7 +18,8 @@ fetchpatch, }: -mkDerivation rec { +mkDerivation { + noLibc = true; pname = "libc"; path = "lib/libc"; extraPaths = [ @@ -53,7 +53,6 @@ mkDerivation rec { gencat rpcgen ctags - lorder tsort ]; @@ -69,7 +68,9 @@ mkDerivation rec { # Suppress lld >= 16 undefined version errors # https://github.com/freebsd/freebsd-src/commit/2ba84b4bcdd6012e8cfbf8a0d060a4438623a638 - env.NIX_LDFLAGS = lib.optionalString (stdenv.hostPlatform.linker == "lld") "--undefined-version"; + env.NIX_LDFLAGS = lib.optionalString ( + crossLibcStdenv.hostPlatform.linker == "lld" + ) "--undefined-version"; makeFlags = [ "STRIP=-s" # flag to install, not command diff --git a/pkgs/os-specific/bsd/openbsd/pkgs/lorder.nix b/pkgs/os-specific/bsd/openbsd/pkgs/lorder.nix index 25ff1fcbd14f6..c923a84317682 100644 --- a/pkgs/os-specific/bsd/openbsd/pkgs/lorder.nix +++ b/pkgs/os-specific/bsd/openbsd/pkgs/lorder.nix @@ -8,6 +8,7 @@ }: mkDerivation { + noCC = true; path = "usr.bin/lorder"; nativeBuildInputs = [ bsdSetupHook diff --git a/pkgs/os-specific/bsd/openbsd/pkgs/make-rules/package.nix b/pkgs/os-specific/bsd/openbsd/pkgs/make-rules/package.nix index 1e7c705c0dfd0..fefa1136eb76d 100644 --- a/pkgs/os-specific/bsd/openbsd/pkgs/make-rules/package.nix +++ b/pkgs/os-specific/bsd/openbsd/pkgs/make-rules/package.nix @@ -2,7 +2,6 @@ fetchpatch, lib, mkDerivation, - stdenv, }: mkDerivation { diff --git a/pkgs/os-specific/bsd/openbsd/pkgs/mkDerivation.nix b/pkgs/os-specific/bsd/openbsd/pkgs/mkDerivation.nix index 6c5bc5cd17193..371c6c58b91fb 100644 --- a/pkgs/os-specific/bsd/openbsd/pkgs/mkDerivation.nix +++ b/pkgs/os-specific/bsd/openbsd/pkgs/mkDerivation.nix @@ -2,6 +2,7 @@ lib, stdenv, stdenvNoCC, + crossLibcStdenv, runCommand, rsync, source, @@ -14,7 +15,13 @@ lib.makeOverridable ( attrs: let - stdenv' = if attrs.noCC or false then stdenvNoCC else stdenv; + stdenv' = + if attrs.noCC or false then + stdenvNoCC + else if attrs.noLibc or false then + crossLibcStdenv + else + stdenv; in stdenv'.mkDerivation ( rec { @@ -43,9 +50,6 @@ lib.makeOverridable ( HOST_SH = stdenv'.shell; - # Since STRIP below is the flag - STRIPBIN = "${stdenv.cc.bintools.targetPrefix}strip"; - makeFlags = [ "STRIP=-s" # flag to install, not command "-B" @@ -81,6 +85,9 @@ lib.makeOverridable ( // lib.optionalAttrs stdenv'.hasCC { # TODO should CC wrapper set this? CPP = "${stdenv'.cc.targetPrefix}cpp"; + + # Since STRIP in `makeFlags` has to be a flag, not the binary itself + STRIPBIN = "${stdenv'.cc.bintools.targetPrefix}strip"; } // lib.optionalAttrs (attrs.headersOnly or false) { installPhase = "includesPhase"; diff --git a/pkgs/os-specific/darwin/noah/default.nix b/pkgs/os-specific/darwin/noah/default.nix index ad63b796f1838..502a165c33d44 100644 --- a/pkgs/os-specific/darwin/noah/default.nix +++ b/pkgs/os-specific/darwin/noah/default.nix @@ -17,7 +17,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Bash on Ubuntu on macOS"; homepage = "https://github.com/linux-noah/noah"; - license = [ licenses.mit licenses.gpl2 ]; + license = [ licenses.mit licenses.gpl2Only ]; maintainers = [ ]; platforms = platforms.darwin; # never built on aarch64-darwin since first introduction in nixpkgs diff --git a/pkgs/os-specific/darwin/osx-cpu-temp/default.nix b/pkgs/os-specific/darwin/osx-cpu-temp/default.nix index 4748d62f83e55..2f3154fe9ea41 100644 --- a/pkgs/os-specific/darwin/osx-cpu-temp/default.nix +++ b/pkgs/os-specific/darwin/osx-cpu-temp/default.nix @@ -24,7 +24,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Outputs current CPU temperature for OSX"; homepage = "https://github.com/lavoiesl/osx-cpu-temp"; - license = licenses.gpl2; + license = licenses.gpl2Plus; maintainers = with maintainers; [ virusdave ]; platforms = platforms.darwin; }; diff --git a/pkgs/os-specific/darwin/raycast/default.nix b/pkgs/os-specific/darwin/raycast/default.nix index 4b8ef7031d07d..a49f1a305ce4a 100644 --- a/pkgs/os-specific/darwin/raycast/default.nix +++ b/pkgs/os-specific/darwin/raycast/default.nix @@ -11,12 +11,12 @@ stdenvNoCC.mkDerivation (finalAttrs: { pname = "raycast"; - version = "1.76.1"; + version = "1.77.1"; src = fetchurl { name = "Raycast.dmg"; url = "https://releases.raycast.com/releases/${finalAttrs.version}/download?build=universal"; - hash = "sha256-dZshCh1MSHf7ywwmNOvYNCXfSqC6C8vTCNsh/+klomk="; + hash = "sha256-+Itz6U1DHV9ZsgjzuvrfVtCJ1yiGSpVOkD28BmHibIQ="; }; dontPatch = true; diff --git a/pkgs/os-specific/linux/afuse/default.nix b/pkgs/os-specific/linux/afuse/default.nix index 6d8bb81b99c29..df64c0d1f56c7 100644 --- a/pkgs/os-specific/linux/afuse/default.nix +++ b/pkgs/os-specific/linux/afuse/default.nix @@ -24,7 +24,7 @@ stdenv.mkDerivation rec { meta = { description = "Automounter in userspace"; homepage = "https://github.com/pcarrier/afuse"; - license = lib.licenses.gpl2; + license = lib.licenses.gpl2Only; maintainers = [ lib.maintainers.marcweber ]; platforms = lib.platforms.unix; }; diff --git a/pkgs/os-specific/linux/amdgpu-pro/default.nix b/pkgs/os-specific/linux/amdgpu-pro/default.nix deleted file mode 100644 index ade6da99810b2..0000000000000 --- a/pkgs/os-specific/linux/amdgpu-pro/default.nix +++ /dev/null @@ -1,222 +0,0 @@ -{ lib -, stdenv -, fetchurl -, elfutils -, xorg -, patchelf -, libxcb -, libxshmfence -, perl -, zlib -, expat -, libffi_3_3 -, libselinux -, libdrm -, udev -, kernel ? null -}: - -with lib; - -let - - bitness = if stdenv.is64bit then "64" else "32"; - - libArch = - if stdenv.hostPlatform.system == "i686-linux" then - "i386-linux-gnu" - else if stdenv.hostPlatform.system == "x86_64-linux" then - "x86_64-linux-gnu" - else throw "amdgpu-pro is Linux only. Sorry ${stdenv.hostPlatform.system}."; - -in stdenv.mkDerivation rec { - - version = "21.30"; - pname = "amdgpu-pro"; - build = "${version}-1290604"; - - src = fetchurl { - url = "https://drivers.amd.com/drivers/linux/amdgpu-pro-${build}-ubuntu-20.04.tar.xz"; - sha256 = "sha256-WECqxjo2WLP3kMWeVyJgYufkvHTzwGaj57yeMGXiQ4I="; - curlOpts = "--referer https://www.amd.com/en/support/kb/release-notes/rn-amdgpu-unified-linux-21-30"; - }; - - postUnpack = '' - mkdir root - pushd $sourceRoot - for deb in *_all.deb *_${if stdenv.is64bit then "amd64" else "i386"}.deb - do - ar p $deb data.tar.xz | tar -C ../root -xJ - done - popd - # if we don't use a short sourceRoot, compilation can fail due to command - # line length - sourceRoot=root - ''; - - passthru = optionalAttrs (kernel != null) { - kmod = stdenv.mkDerivation rec { - inherit version src postUnpack; - name = "${pname}-${version}-kmod-${kernel.dev.version}"; - - postPatch = '' - pushd usr/src/amdgpu-* - patchShebangs amd/dkms/*.sh - substituteInPlace amd/dkms/pre-build.sh --replace "./configure" "./configure --with-linux=${kernel.dev}/lib/modules/${kernel.modDirVersion}/source --with-linux-obj=${kernel.dev}/lib/modules/${kernel.modDirVersion}/build" - popd - ''; - - preConfigure = '' - pushd usr/src/amdgpu-* - makeFlags="$makeFlags M=$(pwd)" - amd/dkms/pre-build.sh ${kernel.version} - popd - ''; - - postBuild = '' - pushd usr/src/amdgpu-* - find -name \*.ko -exec xz {} \; - popd - ''; - - makeFlags = optionalString (kernel != null) "-C ${kernel.dev}/lib/modules/${kernel.modDirVersion}/build modules"; - - installPhase = '' - runHook preInstall - - pushd usr/src/amdgpu-* - find -name \*.ko.xz -exec install -Dm444 {} $out/lib/modules/${kernel.modDirVersion}/kernel/drivers/gpu/drm/{} \; - popd - - runHook postInstall - ''; - - # without this we get a collision with the ttm module from linux - meta.priority = 4; - }; - - fw = stdenv.mkDerivation rec { - inherit version src postUnpack; - name = "${pname}-${version}-fw"; - - installPhase = '' - runHook preInstall - - mkdir -p $out/lib - cp -r usr/src/amdgpu-*/firmware $out/lib/firmware - - runHook postInstall - ''; - }; - }; - - outputs = [ "out" "vulkan" ]; - - depLibPath = makeLibraryPath [ - stdenv.cc.cc.lib - zlib - libxcb - libxshmfence - elfutils - expat - libffi_3_3 - libselinux - # libudev is not listed in any dependencies, but is loaded dynamically - udev - xorg.libXext - xorg.libX11 - xorg.libXfixes - xorg.libXdamage - xorg.libXxf86vm - ]; - - installPhase = '' - runHook preInstall - - mkdir -p $out - - cp -r usr/lib/${libArch} $out/lib - cp -r usr/share $out/share - - mkdir -p $out/opt/amdgpu{,-pro} - cp -r opt/amdgpu-pro/lib/${libArch} $out/opt/amdgpu-pro/lib - cp -r opt/amdgpu/lib/${libArch} $out/opt/amdgpu/lib - - pushd $out/lib - ln -s ../opt/amdgpu-pro/lib/libGL.so* . - ln -s ../opt/amdgpu-pro/lib/libEGL.so* . - popd - - # short name to allow replacement below - ln -s lib/dri $out/dri - - '' + optionalString (stdenv.is64bit) '' - mkdir -p $out/etc - pushd etc - cp -r modprobe.d udev amd $out/etc - popd - - cp -r lib/udev/rules.d/* $out/etc/udev/rules.d - cp -r opt/amdgpu/lib/xorg $out/lib/xorg - cp -r opt/amdgpu-pro/lib/xorg/* $out/lib/xorg - cp -r opt/amdgpu/share $out/opt/amdgpu/share - '' + '' - - mkdir -p $vulkan/share/vulkan/icd.d - install opt/amdgpu-pro/etc/vulkan/icd.d/amd_icd${bitness}.json $vulkan/share/vulkan/icd.d - - runHook postInstall - ''; - - preFixup = (if stdenv.is64bit - # this could also be done with LIBGL_DRIVERS_PATH, but it would need to be - # set in the user session and for Xorg - then '' - expr1='s:/opt/amdgpu/lib/x86_64-linux-gnu/dri\0:/run/opengl-driver/lib/dri\0\0\0\0\0\0\0\0\0\0\0:g' - expr2='s:/usr/lib/x86_64-linux-gnu/dri[\0\:]:/run/opengl-driver/lib/dri\0\0\0\0:g' - perl -pi -e "$expr2" $out/lib/xorg/modules/extensions/libglx.so - '' - else '' - expr1='s:/opt/amdgpu/lib/i386-linux-gnu/dri\0:/run/opengl-driver-32/lib/dri\0\0\0\0\0\0:g' - # we replace a different path on 32-bit because it's the only one long - # enough to fit the target path :( - expr2='s:/usr/lib/i386-linux-gnu/dri[\0\:]:/run/opengl-driver-32/dri\0\0\0:g' - '') + '' - perl -pi -e "$expr1" \ - $out/opt/amdgpu/lib/libEGL.so.1.0.0 \ - $out/opt/amdgpu/lib/libgbm.so.1.0.0 \ - $out/opt/amdgpu/lib/libGL.so.1.2.0 - - perl -pi -e "$expr2" \ - $out/opt/amdgpu-pro/lib/libEGL.so.1 \ - $out/opt/amdgpu-pro/lib/libGL.so.1.2 \ - $out/opt/amdgpu-pro/lib/libGLX_amd.so.0 - - find $out -type f -exec perl -pi -e 's:/opt/amdgpu-pro/:/run/amdgpu-pro/:g' {} \; - find $out -type f -exec perl -pi -e 's:/opt/amdgpu/:/run/amdgpu/:g' {} \; - - substituteInPlace $vulkan/share/vulkan/icd.d/*.json --replace /opt/amdgpu-pro/lib/${libArch} "$out/opt/amdgpu-pro/lib" - ''; - - # doing this in post because shrinking breaks things that dynamically load - postFixup = '' - libPath="$out/opt/amdgpu/lib:$out/opt/amdgpu-pro/lib:$depLibPath" - find "$out" -name '*.so*' -type f -exec patchelf --set-rpath "$libPath" {} \; - ''; - - buildInputs = [ - libdrm - patchelf - perl - ]; - - enableParallelBuilding = true; - - meta = with lib; { - description = "AMDGPU-PRO drivers"; - homepage = "https://www.amd.com/en/support"; - license = licenses.unfree; - platforms = platforms.linux; - maintainers = with maintainers; [ corngood ]; - }; -} diff --git a/pkgs/os-specific/linux/anbox/default.nix b/pkgs/os-specific/linux/anbox/default.nix index 1cb614fa220bb..8f963f34136ac 100644 --- a/pkgs/os-specific/linux/anbox/default.nix +++ b/pkgs/os-specific/linux/anbox/default.nix @@ -165,7 +165,7 @@ stdenv.mkDerivation rec { meta = with lib; { homepage = "https://anbox.io"; description = "Android in a box"; - license = licenses.gpl2; + license = licenses.gpl2Only; maintainers = with maintainers; [ edwtjo ]; platforms = [ "armv7l-linux" "aarch64-linux" "x86_64-linux" ]; }; diff --git a/pkgs/os-specific/linux/asus-ec-sensors/default.nix b/pkgs/os-specific/linux/asus-ec-sensors/default.nix index c80f18a78ecea..ae5c370ed21f6 100644 --- a/pkgs/os-specific/linux/asus-ec-sensors/default.nix +++ b/pkgs/os-specific/linux/asus-ec-sensors/default.nix @@ -27,7 +27,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Linux HWMON sensors driver for ASUS motherboards to read sensor data from the embedded controller"; homepage = "https://github.com/zeule/asus-ec-sensors"; - license = licenses.gpl2; + license = licenses.gpl2Only; platforms = [ "x86_64-linux" ]; maintainers = with maintainers; [ nickhu ]; broken = kernel.kernelOlder "5.11"; diff --git a/pkgs/os-specific/linux/asus-wmi-sensors/default.nix b/pkgs/os-specific/linux/asus-wmi-sensors/default.nix index 3098cbb72538e..074b2e4ff25af 100644 --- a/pkgs/os-specific/linux/asus-wmi-sensors/default.nix +++ b/pkgs/os-specific/linux/asus-wmi-sensors/default.nix @@ -29,7 +29,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Linux HWMON (lmsensors) sensors driver for various ASUS Ryzen and Threadripper motherboards"; homepage = "https://github.com/electrified/asus-wmi-sensors"; - license = licenses.gpl2; + license = licenses.gpl2Only; platforms = [ "x86_64-linux" "i686-linux" ]; maintainers = with maintainers; [ Frostman ]; broken = versionOlder kernel.version "4.12"; diff --git a/pkgs/os-specific/linux/ax99100/default.nix b/pkgs/os-specific/linux/ax99100/default.nix index 761800cfd7ba9..0e99d9390c15f 100644 --- a/pkgs/os-specific/linux/ax99100/default.nix +++ b/pkgs/os-specific/linux/ax99100/default.nix @@ -44,7 +44,7 @@ stdenv.mkDerivation { description = "ASIX AX99100 Serial and Parallel Port driver"; homepage = "https://www.asix.com.tw/en/product/Interface/PCIe_Bridge/AX99100"; # According to the source code in the tarball, the license is gpl2. - license = lib.licenses.gpl2; + license = lib.licenses.gpl2Plus; platforms = lib.platforms.linux; # Older Linux versions need more patches to work. diff --git a/pkgs/os-specific/linux/batman-adv/alfred.nix b/pkgs/os-specific/linux/batman-adv/alfred.nix index ae7d784591d2b..26c433b8a06d9 100644 --- a/pkgs/os-specific/linux/batman-adv/alfred.nix +++ b/pkgs/os-specific/linux/batman-adv/alfred.nix @@ -21,7 +21,7 @@ stdenv.mkDerivation rec { meta = { homepage = "https://www.open-mesh.org/projects/batman-adv/wiki/Wiki"; description = "B.A.T.M.A.N. routing protocol in a linux kernel module for layer 2, information distribution tool"; - license = lib.licenses.gpl2; + license = lib.licenses.gpl2Only; maintainers = with lib.maintainers; [ fpletz ]; platforms = with lib.platforms; linux; }; diff --git a/pkgs/os-specific/linux/batman-adv/batctl.nix b/pkgs/os-specific/linux/batman-adv/batctl.nix index bb44ac5e99f56..e42b1b18d5841 100644 --- a/pkgs/os-specific/linux/batman-adv/batctl.nix +++ b/pkgs/os-specific/linux/batman-adv/batctl.nix @@ -22,7 +22,7 @@ stdenv.mkDerivation rec { homepage = "https://www.open-mesh.org/projects/batman-adv/wiki/Wiki"; description = "B.A.T.M.A.N. routing protocol in a linux kernel module for layer 2, control tool"; mainProgram = "batctl"; - license = lib.licenses.gpl2; + license = lib.licenses.gpl2Only; maintainers = with lib.maintainers; [ fpletz ]; platforms = with lib.platforms; linux; }; diff --git a/pkgs/os-specific/linux/batman-adv/default.nix b/pkgs/os-specific/linux/batman-adv/default.nix index 3d8fbafb2358c..8fa54664fb4dd 100644 --- a/pkgs/os-specific/linux/batman-adv/default.nix +++ b/pkgs/os-specific/linux/batman-adv/default.nix @@ -30,7 +30,7 @@ stdenv.mkDerivation rec { meta = { homepage = "https://www.open-mesh.org/projects/batman-adv/wiki/Wiki"; description = "B.A.T.M.A.N. routing protocol in a linux kernel module for layer 2"; - license = lib.licenses.gpl2; + license = lib.licenses.gpl2Only; maintainers = with lib.maintainers; [ fpletz philiptaron ]; platforms = with lib.platforms; linux; }; diff --git a/pkgs/os-specific/linux/batman-adv/version.nix b/pkgs/os-specific/linux/batman-adv/version.nix index 6292552dd5546..6f0cab252b926 100644 --- a/pkgs/os-specific/linux/batman-adv/version.nix +++ b/pkgs/os-specific/linux/batman-adv/version.nix @@ -1,16 +1,16 @@ { - version = "2024.1"; + version = "2024.2"; # To get these, run: # # ``` # for tool in alfred batctl batman-adv; do - # nix-prefetch-url https://downloads.open-mesh.org/batman/releases/batman-adv-2024.1/$tool-2024.1.tar.gz --type sha256 | xargs nix hash to-sri --type sha256 + # nix-prefetch-url https://downloads.open-mesh.org/batman/releases/batman-adv-2024.2/$tool-2024.2.tar.gz --type sha256 | xargs nix hash to-sri --type sha256 # done # ``` sha256 = { - alfred = "sha256-Ji2tOcm+EirH8GFwXIo+O21GJ4K74zcubfyazgw4Tbk="; - batctl = "sha256-aD3anWBU6yYKGsACLGQnmP9ASNbFOmcuoLMXjmt1egk="; - batman-adv = "sha256-pxQynGJR9IMOnPA/U8v7IoDwZ4RxtUxdRvrmGngtQyU="; + alfred = "sha256-Kpvr62fIh1n+31fRjm79qtDECPIGikYlIBfCJ8sQlnI="; + batctl = "sha256-ywKVMJP/wscA0SLAOj2eTYZ/ZG0wOPMdCpAeWP+ZXQc="; + batman-adv = "sha256-dpKm3uei8/ZnMumuyMcWTgwYGBZ/OvBjv/P/+7AZlkM="; }; } diff --git a/pkgs/os-specific/linux/bpftools/default.nix b/pkgs/os-specific/linux/bpftools/default.nix index 9ec4778ca38ce..eda3fe62fa804 100644 --- a/pkgs/os-specific/linux/bpftools/default.nix +++ b/pkgs/os-specific/linux/bpftools/default.nix @@ -45,7 +45,7 @@ stdenv.mkDerivation rec { meta = with lib; { homepage = "https://github.com/libbpf/bpftool"; description = "Debugging/program analysis tools for the eBPF subsystem"; - license = [ licenses.gpl2 licenses.bsd2 ]; + license = [ licenses.gpl2Only licenses.bsd2 ]; platforms = platforms.linux; maintainers = with maintainers; [ thoughtpolice ]; }; diff --git a/pkgs/os-specific/linux/can-isotp/default.nix b/pkgs/os-specific/linux/can-isotp/default.nix index 7c20b74e54cb4..06329478ded46 100644 --- a/pkgs/os-specific/linux/can-isotp/default.nix +++ b/pkgs/os-specific/linux/can-isotp/default.nix @@ -27,7 +27,7 @@ stdenv.mkDerivation { broken = kernel.kernelAtLeast "5.16"; description = "Kernel module for ISO-TP (ISO 15765-2)"; homepage = "https://github.com/hartkopp/can-isotp"; - license = licenses.gpl2; + license = licenses.gpl2Only; platforms = platforms.linux; maintainers = [ maintainers.evck ]; }; diff --git a/pkgs/os-specific/linux/cpupower/default.nix b/pkgs/os-specific/linux/cpupower/default.nix index 7c1b031d83349..f714ce54dd58d 100644 --- a/pkgs/os-specific/linux/cpupower/default.nix +++ b/pkgs/os-specific/linux/cpupower/default.nix @@ -38,7 +38,7 @@ stdenv.mkDerivation { meta = with lib; { description = "Tool to examine and tune power saving features"; homepage = "https://www.kernel.org/"; - license = licenses.gpl2; + license = licenses.gpl2Only; mainProgram = "cpupower"; platforms = platforms.linux; }; diff --git a/pkgs/os-specific/linux/cramfsprogs/default.nix b/pkgs/os-specific/linux/cramfsprogs/default.nix index 59fbfed1b7287..bde2686624d3c 100644 --- a/pkgs/os-specific/linux/cramfsprogs/default.nix +++ b/pkgs/os-specific/linux/cramfsprogs/default.nix @@ -29,7 +29,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Tools to create, check, and extract content of CramFs images"; homepage = "https://packages.debian.org/jessie/cramfsprogs"; - license = licenses.gpl2; + license = licenses.gpl2Plus; maintainers = with maintainers; [ pamplemousse ]; platforms = platforms.linux; }; diff --git a/pkgs/os-specific/linux/criu/default.nix b/pkgs/os-specific/linux/criu/default.nix index 66e3303890b03..bdae94f78b4de 100644 --- a/pkgs/os-specific/linux/criu/default.nix +++ b/pkgs/os-specific/linux/criu/default.nix @@ -97,7 +97,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Userspace checkpoint/restore for Linux"; homepage = "https://criu.org"; - license = licenses.gpl2; + license = licenses.gpl2Plus; platforms = [ "x86_64-linux" "aarch64-linux" "armv7l-linux" ]; maintainers = [ maintainers.thoughtpolice ]; }; diff --git a/pkgs/os-specific/linux/cryptsetup/default.nix b/pkgs/os-specific/linux/cryptsetup/default.nix index 0e32966615ac1..fb5a6ce28e1d8 100644 --- a/pkgs/os-specific/linux/cryptsetup/default.nix +++ b/pkgs/os-specific/linux/cryptsetup/default.nix @@ -80,7 +80,7 @@ stdenv.mkDerivation rec { homepage = "https://gitlab.com/cryptsetup/cryptsetup/"; description = "LUKS for dm-crypt"; changelog = "https://gitlab.com/cryptsetup/cryptsetup/-/raw/v${version}/docs/v${version}-ReleaseNotes"; - license = lib.licenses.gpl2; + license = lib.licenses.gpl2Plus; mainProgram = "cryptsetup"; maintainers = with lib.maintainers; [ raitobezarius ]; platforms = with lib.platforms; linux; diff --git a/pkgs/os-specific/linux/digimend/default.nix b/pkgs/os-specific/linux/digimend/default.nix index a30d7cbe3a32a..31d68acc53166 100644 --- a/pkgs/os-specific/linux/digimend/default.nix +++ b/pkgs/os-specific/linux/digimend/default.nix @@ -43,7 +43,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "DIGImend graphics tablet drivers for the Linux kernel"; homepage = "https://digimend.github.io/"; - license = licenses.gpl2; + license = licenses.gpl2Plus; maintainers = with maintainers; [ gebner ]; platforms = platforms.linux; }; diff --git a/pkgs/os-specific/linux/directvnc/default.nix b/pkgs/os-specific/linux/directvnc/default.nix index 78ccb67725713..5ec40370bbbaa 100644 --- a/pkgs/os-specific/linux/directvnc/default.nix +++ b/pkgs/os-specific/linux/directvnc/default.nix @@ -29,7 +29,7 @@ stdenv.mkDerivation { meta = with lib; { description = "DirectFB VNC client"; homepage = "http://drinkmilk.github.io/directvnc/"; - license = licenses.gpl2; + license = licenses.gpl2Plus; maintainers = [ maintainers.raskin ]; platforms = platforms.linux; }; diff --git a/pkgs/os-specific/linux/dpdk/default.nix b/pkgs/os-specific/linux/dpdk/default.nix index bd5d9db661a88..3fd703c7ce1e8 100644 --- a/pkgs/os-specific/linux/dpdk/default.nix +++ b/pkgs/os-specific/linux/dpdk/default.nix @@ -82,7 +82,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Set of libraries and drivers for fast packet processing"; homepage = "http://dpdk.org/"; - license = with licenses; [ lgpl21 gpl2 bsd2 ]; + license = with licenses; [ lgpl21 gpl2Only bsd2 ]; platforms = platforms.linux; maintainers = with maintainers; [ magenbluten orivej mic92 zhaofengli ]; }; diff --git a/pkgs/os-specific/linux/dstat/default.nix b/pkgs/os-specific/linux/dstat/default.nix index 75b613075e781..7fbd314a8ec7f 100644 --- a/pkgs/os-specific/linux/dstat/default.nix +++ b/pkgs/os-specific/linux/dstat/default.nix @@ -35,7 +35,7 @@ python3Packages.buildPythonApplication rec { homepage = "http://dag.wieers.com/home-made/dstat/"; description = "Versatile resource statistics tool"; mainProgram = "dstat"; - license = licenses.gpl2; + license = licenses.gpl2Plus; platforms = platforms.linux; maintainers = with maintainers; [ ]; changelog = "https://github.com/dstat-real/dstat/blob/v${version}/ChangeLog"; diff --git a/pkgs/os-specific/linux/e1000e/default.nix b/pkgs/os-specific/linux/e1000e/default.nix index 51bc6ada07dec..1ed7f6aa0193a 100644 --- a/pkgs/os-specific/linux/e1000e/default.nix +++ b/pkgs/os-specific/linux/e1000e/default.nix @@ -32,6 +32,6 @@ stdenv.mkDerivation rec { meta = { description = "Linux kernel drivers for Intel Ethernet adapters and LOMs (LAN On Motherboard)"; homepage = "http://e1000.sf.net/"; - license = lib.licenses.gpl2; + license = lib.licenses.gpl2Only; }; } diff --git a/pkgs/os-specific/linux/ebtables/default.nix b/pkgs/os-specific/linux/ebtables/default.nix index 57bf7da7c049e..bd39175050e94 100644 --- a/pkgs/os-specific/linux/ebtables/default.nix +++ b/pkgs/os-specific/linux/ebtables/default.nix @@ -28,7 +28,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Filtering tool for Linux-based bridging firewalls"; homepage = "http://ebtables.sourceforge.net/"; - license = licenses.gpl2; + license = licenses.gpl2Plus; platforms = platforms.linux; }; } diff --git a/pkgs/os-specific/linux/edac-utils/default.nix b/pkgs/os-specific/linux/edac-utils/default.nix index 6171f8ed3073e..b23e0d34401a9 100644 --- a/pkgs/os-specific/linux/edac-utils/default.nix +++ b/pkgs/os-specific/linux/edac-utils/default.nix @@ -32,7 +32,7 @@ stdenv.mkDerivation { meta = with lib; { homepage = "https://github.com/grondo/edac-utils"; description = "Handles the reporting of hardware-related memory errors"; - license = licenses.gpl2; + license = licenses.gpl2Plus; platforms = platforms.linux; }; } diff --git a/pkgs/os-specific/linux/eventstat/default.nix b/pkgs/os-specific/linux/eventstat/default.nix index 3c551939c7cf2..beb3cc6e97143 100644 --- a/pkgs/os-specific/linux/eventstat/default.nix +++ b/pkgs/os-specific/linux/eventstat/default.nix @@ -22,7 +22,7 @@ stdenv.mkDerivation rec { description = "Simple monitoring of system events"; mainProgram = "eventstat"; homepage = "https://github.com/ColinIanKing/eventstat"; - license = licenses.gpl2; + license = licenses.gpl2Plus; platforms = platforms.linux; maintainers = with maintainers; [ ]; }; diff --git a/pkgs/os-specific/linux/exfat/default.nix b/pkgs/os-specific/linux/exfat/default.nix index e247bbb9e837c..c252238f7bd69 100644 --- a/pkgs/os-specific/linux/exfat/default.nix +++ b/pkgs/os-specific/linux/exfat/default.nix @@ -29,7 +29,7 @@ stdenv.mkDerivation rec { meta = { description = "exfat kernel module"; inherit (src.meta) homepage; - license = lib.licenses.gpl2; + license = lib.licenses.gpl2Plus; maintainers = with lib.maintainers; [ makefu ]; platforms = lib.platforms.linux; broken = true; diff --git a/pkgs/os-specific/linux/facetimehd/default.nix b/pkgs/os-specific/linux/facetimehd/default.nix index ceba075758a6a..4fa670afb3962 100644 --- a/pkgs/os-specific/linux/facetimehd/default.nix +++ b/pkgs/os-specific/linux/facetimehd/default.nix @@ -36,7 +36,7 @@ stdenv.mkDerivation rec { meta = with lib; { homepage = "https://github.com/patjak/bcwc_pcie"; description = "Linux driver for the Facetime HD (Broadcom 1570) PCIe webcam"; - license = licenses.gpl2; + license = licenses.gpl2Only; maintainers = with maintainers; [ womfoo grahamc kraem ]; platforms = [ "i686-linux" "x86_64-linux" ]; }; diff --git a/pkgs/os-specific/linux/fbterm/default.nix b/pkgs/os-specific/linux/fbterm/default.nix index 8704c72a21ba2..f472ce23aa2f7 100644 --- a/pkgs/os-specific/linux/fbterm/default.nix +++ b/pkgs/os-specific/linux/fbterm/default.nix @@ -99,7 +99,7 @@ stdenv.mkDerivation rec { mainProgram = "fbterm"; homepage = "https://salsa.debian.org/debian/fbterm"; maintainers = with maintainers; [ lovesegfault raskin ]; - license = licenses.gpl2; + license = licenses.gpl2Plus; platforms = platforms.linux; }; } diff --git a/pkgs/os-specific/linux/firmware/raspberrypi/armstubs.nix b/pkgs/os-specific/linux/firmware/raspberrypi/armstubs.nix index 72c6f6235548d..4ff7bf48b920c 100644 --- a/pkgs/os-specific/linux/firmware/raspberrypi/armstubs.nix +++ b/pkgs/os-specific/linux/firmware/raspberrypi/armstubs.nix @@ -48,6 +48,6 @@ stdenv.mkDerivation { homepage = "https://github.com/raspberrypi/tools"; license = licenses.bsd3; platforms = [ "armv6l-linux" "armv7l-linux" "aarch64-linux" ]; - maintainers = with maintainers; [ samueldr ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/os-specific/linux/firmware/zd1211/default.nix b/pkgs/os-specific/linux/firmware/zd1211/default.nix index eb6276d36ac99..ecf131effd40a 100644 --- a/pkgs/os-specific/linux/firmware/zd1211/default.nix +++ b/pkgs/os-specific/linux/firmware/zd1211/default.nix @@ -24,7 +24,7 @@ stdenvNoCC.mkDerivation rec { meta = { description = "Firmware for the ZyDAS ZD1211(b) 802.11a/b/g USB WLAN chip"; homepage = "https://sourceforge.net/projects/zd1211/"; - license = lib.licenses.gpl2; + license = lib.licenses.gpl2Only; platforms = lib.platforms.linux; }; } diff --git a/pkgs/os-specific/linux/forkstat/default.nix b/pkgs/os-specific/linux/forkstat/default.nix index 75ca64833a599..8454987343b0f 100644 --- a/pkgs/os-specific/linux/forkstat/default.nix +++ b/pkgs/os-specific/linux/forkstat/default.nix @@ -21,7 +21,7 @@ stdenv.mkDerivation rec { description = "Process fork/exec/exit monitoring tool"; mainProgram = "forkstat"; homepage = "https://github.com/ColinIanKing/forkstat"; - license = licenses.gpl2; + license = licenses.gpl2Plus; platforms = platforms.linux; maintainers = with maintainers; [ womfoo ]; }; diff --git a/pkgs/os-specific/linux/forktty/default.nix b/pkgs/os-specific/linux/forktty/default.nix index 7dc1f0c3b2e4c..7240368861380 100644 --- a/pkgs/os-specific/linux/forktty/default.nix +++ b/pkgs/os-specific/linux/forktty/default.nix @@ -22,7 +22,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Tool to detach from controlling TTY and attach to another"; - license = licenses.gpl2; + license = licenses.gpl2Only; maintainers = with maintainers; [ raskin ]; platforms = platforms.linux; }; diff --git a/pkgs/os-specific/linux/framework-laptop-kmod/default.nix b/pkgs/os-specific/linux/framework-laptop-kmod/default.nix index eddc5e272aaec..c31ce1b84b6b1 100644 --- a/pkgs/os-specific/linux/framework-laptop-kmod/default.nix +++ b/pkgs/os-specific/linux/framework-laptop-kmod/default.nix @@ -31,7 +31,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Kernel module that exposes the Framework Laptop (13, 16)'s battery charge limit and LEDs to userspace"; homepage = "https://github.com/DHowett/framework-laptop-kmod"; - license = licenses.gpl2; + license = licenses.gpl2Only; maintainers = with maintainers; [ gaykitty ]; platforms = platforms.linux; }; diff --git a/pkgs/os-specific/linux/fswebcam/default.nix b/pkgs/os-specific/linux/fswebcam/default.nix index 1f45d7955da49..08b1b9935291e 100644 --- a/pkgs/os-specific/linux/fswebcam/default.nix +++ b/pkgs/os-specific/linux/fswebcam/default.nix @@ -17,6 +17,6 @@ stdenv.mkDerivation rec { mainProgram = "fswebcam"; homepage = "http://www.sanslogic.co.uk/fswebcam"; platforms = lib.platforms.linux; - license = lib.licenses.gpl2; + license = lib.licenses.gpl2Only; }; } diff --git a/pkgs/os-specific/linux/fwts/default.nix b/pkgs/os-specific/linux/fwts/default.nix index 5a06fac5d6c16..2d438a8a88c68 100644 --- a/pkgs/os-specific/linux/fwts/default.nix +++ b/pkgs/os-specific/linux/fwts/default.nix @@ -32,7 +32,7 @@ stdenv.mkDerivation rec { homepage = "https://wiki.ubuntu.com/FirmwareTestSuite"; description = "Firmware Test Suite"; platforms = platforms.linux; - license = licenses.gpl2; + license = licenses.gpl2Plus; maintainers = with maintainers; [ tadfisher ]; }; } diff --git a/pkgs/os-specific/linux/g15daemon/default.nix b/pkgs/os-specific/linux/g15daemon/default.nix index 8cd10899a3369..528b5e0993f54 100644 --- a/pkgs/os-specific/linux/g15daemon/default.nix +++ b/pkgs/os-specific/linux/g15daemon/default.nix @@ -4,7 +4,7 @@ , libusb-compat-0_1 }: let - license = lib.licenses.gpl2; + license = lib.licenses.gpl2Plus; maintainers = with lib.maintainers; [ peterhoeg ]; g15src = { pname, version, sha256 }: fetchurl { diff --git a/pkgs/os-specific/linux/gasket/default.nix b/pkgs/os-specific/linux/gasket/default.nix index d3215bd668c5c..e8df9acf8e4b5 100644 --- a/pkgs/os-specific/linux/gasket/default.nix +++ b/pkgs/os-specific/linux/gasket/default.nix @@ -28,7 +28,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Coral Gasket Driver allows usage of the Coral EdgeTPU on Linux systems"; homepage = "https://github.com/google/gasket-driver"; - license = licenses.gpl2; + license = licenses.gpl2Only; maintainers = [ lib.maintainers.kylehendricks ]; platforms = platforms.linux; broken = versionOlder kernel.version "5.15"; diff --git a/pkgs/os-specific/linux/gcadapter-oc-kmod/default.nix b/pkgs/os-specific/linux/gcadapter-oc-kmod/default.nix index 1f0265207dfbf..a1e3a8be430e5 100644 --- a/pkgs/os-specific/linux/gcadapter-oc-kmod/default.nix +++ b/pkgs/os-specific/linux/gcadapter-oc-kmod/default.nix @@ -31,7 +31,7 @@ in stdenv.mkDerivation rec { meta = with lib; { description = "Kernel module for overclocking the Nintendo Wii U/Mayflash GameCube adapter"; homepage = "https://github.com/HannesMann/gcadapter-oc-kmod"; - license = licenses.gpl2; + license = licenses.gpl2Only; maintainers = with maintainers; [ r-burns ]; platforms = platforms.linux; }; diff --git a/pkgs/os-specific/linux/gobi_loader/default.nix b/pkgs/os-specific/linux/gobi_loader/default.nix index 2b251242119c8..2783e9f559b82 100644 --- a/pkgs/os-specific/linux/gobi_loader/default.nix +++ b/pkgs/os-specific/linux/gobi_loader/default.nix @@ -21,7 +21,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Firmware loader for Qualcomm Gobi USB chipsets"; homepage = "https://www.codon.org.uk/~mjg59/gobi_loader/"; - license = with licenses; [ gpl2 ]; + license = with licenses; [ gpl2Only ]; maintainers = with maintainers; [ _0x4A6F ]; platforms = platforms.linux; }; diff --git a/pkgs/os-specific/linux/gt/default.nix b/pkgs/os-specific/linux/gt/default.nix index 9d35556358b5c..e5a6967579808 100644 --- a/pkgs/os-specific/linux/gt/default.nix +++ b/pkgs/os-specific/linux/gt/default.nix @@ -27,7 +27,7 @@ stdenv.mkDerivation (finalAttrs: { description = "Linux command line tool for setting up USB gadgets using configfs"; mainProgram = "gt"; license = with lib.licenses; [ asl20 ]; - maintainers = with lib.maintainers; [ lheckemann ]; + maintainers = with lib.maintainers; [ ]; platforms = lib.platforms.linux; }; }) diff --git a/pkgs/os-specific/linux/hdapsd/default.nix b/pkgs/os-specific/linux/hdapsd/default.nix index e9dca6fd8927e..43700d20aa9aa 100644 --- a/pkgs/os-specific/linux/hdapsd/default.nix +++ b/pkgs/os-specific/linux/hdapsd/default.nix @@ -15,7 +15,7 @@ stdenv.mkDerivation rec { { description = "Hard Drive Active Protection System Daemon"; mainProgram = "hdapsd"; homepage = "http://hdaps.sf.net/"; - license = licenses.gpl2; + license = licenses.gpl2Plus; platforms = platforms.linux; maintainers = [ maintainers.ehmry ]; }; diff --git a/pkgs/os-specific/linux/health-check/default.nix b/pkgs/os-specific/linux/health-check/default.nix index e63b7ca7fe258..e55433c0a70bd 100644 --- a/pkgs/os-specific/linux/health-check/default.nix +++ b/pkgs/os-specific/linux/health-check/default.nix @@ -25,7 +25,7 @@ stdenv.mkDerivation rec { description = "Process monitoring tool"; mainProgram = "health-check"; homepage = "https://github.com/ColinIanKing/health-check"; - license = licenses.gpl2; + license = licenses.gpl2Plus; platforms = platforms.linux; maintainers = with maintainers; [ dtzWill ]; }; diff --git a/pkgs/os-specific/linux/hostapd/default.nix b/pkgs/os-specific/linux/hostapd/default.nix index 7e89feaa6514f..1187cd2194570 100644 --- a/pkgs/os-specific/linux/hostapd/default.nix +++ b/pkgs/os-specific/linux/hostapd/default.nix @@ -104,7 +104,7 @@ stdenv.mkDerivation rec { meta = with lib; { homepage = "https://w1.fi/hostapd/"; description = "User space daemon for access point and authentication servers"; - license = licenses.gpl2; + license = licenses.bsd3; maintainers = with maintainers; [ ]; platforms = platforms.linux; }; diff --git a/pkgs/os-specific/linux/i7z/default.nix b/pkgs/os-specific/linux/i7z/default.nix index 7f2b2d5d0a594..5a7279ba998cb 100644 --- a/pkgs/os-specific/linux/i7z/default.nix +++ b/pkgs/os-specific/linux/i7z/default.nix @@ -50,7 +50,7 @@ stdenv.mkDerivation rec { description = "Better i7 (and now i3, i5) reporting tool for Linux"; mainProgram = "i7z"; homepage = "https://github.com/DimitryAndric/i7z"; - license = licenses.gpl2; + license = licenses.gpl2Only; maintainers = with maintainers; [ bluescreen303 ]; # broken on ARM platforms = [ "x86_64-linux" ]; diff --git a/pkgs/os-specific/linux/i810switch/default.nix b/pkgs/os-specific/linux/i810switch/default.nix index ab3fa970d380a..a5e24b1eb2936 100644 --- a/pkgs/os-specific/linux/i810switch/default.nix +++ b/pkgs/os-specific/linux/i810switch/default.nix @@ -20,7 +20,7 @@ stdenv.mkDerivation { description = "Utility for switching between the LCD and external VGA display on Intel graphics cards"; homepage = "http://www16.plala.or.jp/mano-a-mano/i810switch.html"; maintainers = with maintainers; [ ]; - license = licenses.gpl2; + license = licenses.gpl2Only; platforms = platforms.linux; }; } diff --git a/pkgs/os-specific/linux/ifenslave/default.nix b/pkgs/os-specific/linux/ifenslave/default.nix index cc132c69faf71..8aeeff77ecbb7 100644 --- a/pkgs/os-specific/linux/ifenslave/default.nix +++ b/pkgs/os-specific/linux/ifenslave/default.nix @@ -23,7 +23,7 @@ stdenv.mkDerivation rec { meta = { description = "Utility for enslaving networking interfaces under a bond"; mainProgram = "ifenslave"; - license = lib.licenses.gpl2; + license = lib.licenses.gpl2Only; platforms = lib.platforms.linux; }; } diff --git a/pkgs/os-specific/linux/ima-evm-utils/default.nix b/pkgs/os-specific/linux/ima-evm-utils/default.nix index fa90ceecdb2b1..5960e49e78250 100644 --- a/pkgs/os-specific/linux/ima-evm-utils/default.nix +++ b/pkgs/os-specific/linux/ima-evm-utils/default.nix @@ -40,7 +40,7 @@ stdenv.mkDerivation rec { description = "evmctl utility to manage digital signatures of the Linux kernel integrity subsystem (IMA/EVM)"; mainProgram = "evmctl"; homepage = "https://sourceforge.net/projects/linux-ima/"; - license = lib.licenses.gpl2; + license = lib.licenses.gpl2Only; platforms = lib.platforms.linux; maintainers = with lib.maintainers; [ nickcao ]; }; diff --git a/pkgs/os-specific/linux/input-utils/default.nix b/pkgs/os-specific/linux/input-utils/default.nix deleted file mode 100644 index 36a203a47c76b..0000000000000 --- a/pkgs/os-specific/linux/input-utils/default.nix +++ /dev/null @@ -1,30 +0,0 @@ -{ lib, stdenv, fetchurl, linuxHeaders }: - -stdenv.mkDerivation rec { - pname = "input-utils"; - version = "1.3"; - - src = fetchurl { - url = "https://www.kraxel.org/releases/input/input-${version}.tar.gz"; - sha256 = "11w0pp20knx6qpgzmawdbk1nj2z3fzp8yd6nag6s8bcga16w6hli"; - }; - - prePatch = '' - # Use proper include path for kernel include files. - substituteInPlace ./name.sh --replace "/usr/include/linux/" "${linuxHeaders}/include/linux/" - substituteInPlace ./lirc.sh --replace "/usr/include/linux/" "${linuxHeaders}/include/linux/" - ''; - - makeFlags = [ - "prefix=$(out)" - "STRIP=" - ]; - - meta = with lib; { - description = "Input layer utilities, includes lsinput"; - homepage = "https://www.kraxel.org/blog/linux/input/"; - license = licenses.gpl2; - maintainers = with maintainers; [ samueldr ]; - platforms = platforms.linux; - }; -} diff --git a/pkgs/os-specific/linux/intel-speed-select/default.nix b/pkgs/os-specific/linux/intel-speed-select/default.nix index 9d9c9b134c64e..97bfdbeb30d5c 100644 --- a/pkgs/os-specific/linux/intel-speed-select/default.nix +++ b/pkgs/os-specific/linux/intel-speed-select/default.nix @@ -15,7 +15,7 @@ stdenv.mkDerivation { description = "Tool to enumerate and control the Intel Speed Select Technology features"; mainProgram = "intel-speed-select"; homepage = "https://www.kernel.org/"; - license = licenses.gpl2; + license = licenses.gpl2Only; platforms = [ "i686-linux" "x86_64-linux" ]; # x86-specific broken = kernel.kernelAtLeast "5.18"; }; diff --git a/pkgs/os-specific/linux/iotop/default.nix b/pkgs/os-specific/linux/iotop/default.nix index 496ff7f115377..767bf4a2915ce 100644 --- a/pkgs/os-specific/linux/iotop/default.nix +++ b/pkgs/os-specific/linux/iotop/default.nix @@ -21,7 +21,7 @@ python3Packages.buildPythonApplication rec { meta = with lib; { description = "Tool to find out the processes doing the most IO"; homepage = "http://guichaz.free.fr/iotop"; - license = licenses.gpl2; + license = licenses.gpl2Plus; mainProgram = "iotop"; maintainers = [ maintainers.raskin ]; platforms = platforms.linux; diff --git a/pkgs/os-specific/linux/iproute/default.nix b/pkgs/os-specific/linux/iproute/default.nix index 3cc7759b41830..effe5eb8526b9 100644 --- a/pkgs/os-specific/linux/iproute/default.nix +++ b/pkgs/os-specific/linux/iproute/default.nix @@ -66,7 +66,7 @@ stdenv.mkDerivation rec { homepage = "https://wiki.linuxfoundation.org/networking/iproute2"; description = "Collection of utilities for controlling TCP/IP networking and traffic control in Linux"; platforms = platforms.linux; - license = licenses.gpl2; + license = licenses.gpl2Only; maintainers = with maintainers; [ primeos eelco fpletz globin ]; }; } diff --git a/pkgs/os-specific/linux/ipset/default.nix b/pkgs/os-specific/linux/ipset/default.nix index 4b8fadcecf25c..94a5a43b76e19 100644 --- a/pkgs/os-specific/linux/ipset/default.nix +++ b/pkgs/os-specific/linux/ipset/default.nix @@ -17,7 +17,7 @@ stdenv.mkDerivation rec { meta = with lib; { homepage = "https://ipset.netfilter.org/"; description = "Administration tool for IP sets"; - license = licenses.gpl2; + license = licenses.gpl2Plus; platforms = platforms.linux; }; } diff --git a/pkgs/os-specific/linux/iptables/default.nix b/pkgs/os-specific/linux/iptables/default.nix index 2efa609518256..afaa91ca2f37e 100644 --- a/pkgs/os-specific/linux/iptables/default.nix +++ b/pkgs/os-specific/linux/iptables/default.nix @@ -54,7 +54,7 @@ stdenv.mkDerivation rec { homepage = "https://www.netfilter.org/projects/iptables/index.html"; platforms = platforms.linux; maintainers = with maintainers; [ fpletz ]; - license = licenses.gpl2; + license = licenses.gpl2Plus; downloadPage = "https://www.netfilter.org/projects/iptables/files/"; }; } diff --git a/pkgs/os-specific/linux/ipu6-drivers/default.nix b/pkgs/os-specific/linux/ipu6-drivers/default.nix index 276926fef8aa6..cb1cf06b530e9 100644 --- a/pkgs/os-specific/linux/ipu6-drivers/default.nix +++ b/pkgs/os-specific/linux/ipu6-drivers/default.nix @@ -44,7 +44,7 @@ stdenv.mkDerivation { meta = { homepage = "https://github.com/intel/ipu6-drivers"; description = "IPU6 kernel driver"; - license = lib.licenses.gpl2; + license = lib.licenses.gpl2Only; maintainers = with lib.maintainers; [ ]; platforms = [ "x86_64-linux" ]; # requires 6.1.7 https://github.com/intel/ipu6-drivers/pull/84 diff --git a/pkgs/os-specific/linux/iputils/default.nix b/pkgs/os-specific/linux/iputils/default.nix index aa83a91216b69..1be7debb895cc 100644 --- a/pkgs/os-specific/linux/iputils/default.nix +++ b/pkgs/os-specific/linux/iputils/default.nix @@ -79,6 +79,6 @@ stdenv.mkDerivation rec { ''; license = with licenses; [ gpl2Plus bsd3 ]; platforms = platforms.linux; - maintainers = with maintainers; [ primeos lheckemann ]; + maintainers = with maintainers; [ primeos ]; }; } diff --git a/pkgs/os-specific/linux/ipvsadm/default.nix b/pkgs/os-specific/linux/ipvsadm/default.nix index c988167469188..c6447e9a9b578 100644 --- a/pkgs/os-specific/linux/ipvsadm/default.nix +++ b/pkgs/os-specific/linux/ipvsadm/default.nix @@ -35,7 +35,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Linux Virtual Server support programs"; homepage = "http://www.linuxvirtualserver.org/software/ipvs.html"; - license = licenses.gpl2; + license = licenses.gpl2Plus; platforms = platforms.linux; }; } diff --git a/pkgs/os-specific/linux/ivsc-driver/default.nix b/pkgs/os-specific/linux/ivsc-driver/default.nix index 5612c9170abd4..1308ff5f37cf4 100644 --- a/pkgs/os-specific/linux/ivsc-driver/default.nix +++ b/pkgs/os-specific/linux/ivsc-driver/default.nix @@ -35,7 +35,7 @@ stdenv.mkDerivation { meta = { homepage = "https://github.com/intel/ivsc-driver"; description = "Intel Vision Sensing Controller kernel driver"; - license = lib.licenses.gpl2; + license = lib.licenses.gpl2Only; maintainers = with lib.maintainers; [ ]; platforms = [ "x86_64-linux" ]; broken = kernel.kernelOlder "5.15"; diff --git a/pkgs/os-specific/linux/ixgbevf/default.nix b/pkgs/os-specific/linux/ixgbevf/default.nix index 6a748c4701903..3cb9d06e7fcf4 100644 --- a/pkgs/os-specific/linux/ixgbevf/default.nix +++ b/pkgs/os-specific/linux/ixgbevf/default.nix @@ -26,7 +26,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Intel 82599 Virtual Function Driver"; homepage = "https://sourceforge.net/projects/e1000/files/ixgbevf%20stable/"; - license = licenses.gpl2; + license = licenses.gpl2Only; priority = 20; # kernels ship ixgbevf driver for a long time already, maybe switch to a newest kernel? broken = versionAtLeast kernel.version "5.2"; diff --git a/pkgs/os-specific/linux/jool/cli.nix b/pkgs/os-specific/linux/jool/cli.nix index ee5ee1128a867..904bb7366f7e2 100644 --- a/pkgs/os-specific/linux/jool/cli.nix +++ b/pkgs/os-specific/linux/jool/cli.nix @@ -36,7 +36,7 @@ stdenv.mkDerivation { homepage = "https://www.jool.mx/"; description = "Fairly compliant SIIT and Stateful NAT64 for Linux - CLI tools"; platforms = platforms.linux; - license = licenses.gpl2; + license = licenses.gpl2Only; maintainers = with maintainers; [ fpletz ]; }; } diff --git a/pkgs/os-specific/linux/jujuutils/default.nix b/pkgs/os-specific/linux/jujuutils/default.nix index 12e4c15e62c0b..8c5dabf66a900 100644 --- a/pkgs/os-specific/linux/jujuutils/default.nix +++ b/pkgs/os-specific/linux/jujuutils/default.nix @@ -14,7 +14,7 @@ stdenv.mkDerivation rec { meta = { homepage = "https://github.com/cladisch/linux-firewire-utils"; description = "Utilities around FireWire devices connected to a Linux computer"; - license = lib.licenses.gpl2; + license = lib.licenses.gpl2Only; platforms = lib.platforms.linux; }; } diff --git a/pkgs/os-specific/linux/kernel-headers/default.nix b/pkgs/os-specific/linux/kernel-headers/default.nix index bf3bf4950a259..450e26b4eca17 100644 --- a/pkgs/os-specific/linux/kernel-headers/default.nix +++ b/pkgs/os-specific/linux/kernel-headers/default.nix @@ -104,7 +104,7 @@ let meta = with lib; { description = "Header files and scripts for Linux kernel"; - license = licenses.gpl2; + license = licenses.gpl2Only; platforms = platforms.linux; }; }; diff --git a/pkgs/os-specific/linux/kernel/common-config.nix b/pkgs/os-specific/linux/kernel/common-config.nix index c9bf296160629..551d4cffbb923 100644 --- a/pkgs/os-specific/linux/kernel/common-config.nix +++ b/pkgs/os-specific/linux/kernel/common-config.nix @@ -327,6 +327,10 @@ let INET_RAW_DIAG = mkDefault module; INET_DIAG_DESTROY = mkDefault yes; + # IPsec over TCP + INET_ESPINTCP = whenAtLeast "5.8" yes; + INET6_ESPINTCP = whenAtLeast "5.8" yes; + # enable multipath-tcp MPTCP = whenAtLeast "5.6" yes; MPTCP_IPV6 = whenAtLeast "5.6" yes; @@ -435,7 +439,7 @@ let DRM_GMA500 = whenAtLeast "5.12" module; DRM_GMA600 = whenOlder "5.13" yes; DRM_GMA3600 = whenOlder "5.12" yes; - DRM_VMWGFX_FBCON = whenOlder "6.2" yes; + DRM_VMWGFX_FBCON = whenOlder "6.1" yes; # (experimental) amdgpu support for verde and newer chipsets DRM_AMDGPU_SI = yes; # (stable) amdgpu support for bonaire and newer chipsets @@ -617,8 +621,8 @@ let F2FS_FS_COMPRESSION = whenAtLeast "5.6" yes; UDF_FS = module; - NFSD_V2_ACL = whenOlder "5.15" yes; - NFSD_V3 = whenOlder "5.15" yes; + NFSD_V2_ACL = whenOlder "5.10" yes; + NFSD_V3 = whenOlder "5.10" yes; NFSD_V3_ACL = yes; NFSD_V4 = yes; NFSD_V4_SECURITY_LABEL = yes; diff --git a/pkgs/os-specific/linux/kernel/generic.nix b/pkgs/os-specific/linux/kernel/generic.nix index 081cfcaa8b60f..5981de6732426 100644 --- a/pkgs/os-specific/linux/kernel/generic.nix +++ b/pkgs/os-specific/linux/kernel/generic.nix @@ -140,8 +140,7 @@ let passAsFile = [ "kernelConfig" ]; depsBuildBuild = [ buildPackages.stdenv.cc ]; - nativeBuildInputs = [ perl gmp libmpc mpfr ] - ++ lib.optionals (lib.versionAtLeast version "4.16") [ bison flex ] + nativeBuildInputs = [ perl gmp libmpc mpfr bison flex ] ++ lib.optional (lib.versionAtLeast version "5.2") pahole ++ lib.optionals withRust [ rust-bindgen rustc ] ; diff --git a/pkgs/os-specific/linux/kernel/gpio-utils.nix b/pkgs/os-specific/linux/kernel/gpio-utils.nix index 40e282bbf541d..dc8f88b5769f7 100644 --- a/pkgs/os-specific/linux/kernel/gpio-utils.nix +++ b/pkgs/os-specific/linux/kernel/gpio-utils.nix @@ -19,6 +19,6 @@ stdenv.mkDerivation { description = "Linux tools to inspect the gpiochip interface"; maintainers = with maintainers; [ kwohlfahrt ]; platforms = platforms.linux; - license = licenses.gpl2; + license = licenses.gpl2Only; }; } diff --git a/pkgs/os-specific/linux/kernel/kernels-org.json b/pkgs/os-specific/linux/kernel/kernels-org.json index eac6f8ed019f7..4722c0a64a057 100644 --- a/pkgs/os-specific/linux/kernel/kernels-org.json +++ b/pkgs/os-specific/linux/kernel/kernels-org.json @@ -1,19 +1,19 @@ { "testing": { - "version": "6.10-rc3", - "hash": "sha256:11kjvjww4n0l4knq1v4rsbnac4s01r69yk1lrb9hgikszxyjklwk" + "version": "6.10-rc4", + "hash": "sha256:1cx7c25fa8pvabhwph0rdqdryalxgl7rs1ry0v4k048bxpisvahf" }, "6.1": { - "version": "6.1.94", - "hash": "sha256:0sakp5k4q2xfd3la7j8s2rcbvndh6fdqgzz5ivyqf0df4anp3siq" + "version": "6.1.95", + "hash": "sha256:1gfz2j6iixbr0dfkb8jkwnb4gicrm5rc5lsa24wmyrkm3nmg0q19" }, "5.15": { "version": "5.15.161", "hash": "sha256:0k277hz6nq62v0xfc1n2hc69cyvmnxpl0qcbszinajywh23gfafn" }, "5.10": { - "version": "5.10.219", - "hash": "sha256:0c6dhi6w8likvyyzw7wj2fqhz8nhv760kkic8bk66r1prhakzdwk" + "version": "5.10.220", + "hash": "sha256:16z1xqm7djm8pl15s5wvgc4pwq81gydcf00jpxfplw794kwszhvw" }, "5.4": { "version": "5.4.278", @@ -24,15 +24,15 @@ "hash": "sha256:0lmyhwr4la7kvim7jqdi29scjkvqp9crpvdbhpb4j8d7mj5kgzz4" }, "6.6": { - "version": "6.6.34", - "hash": "sha256:180v8q5376gl6zmjd54qcb1wpmz7cq299bdbhmz738rsb67yrq64" + "version": "6.6.35", + "hash": "sha256:17nxymy3r9q45cfzc9rqp937m37zr1b8fjn1m0x0dv8jhxrfxqzw" }, "6.8": { "version": "6.8.12", "hash": "sha256:0fb0m0fv4521g63gq04d7lm6hy8169s1rykiav5bkd99s9b1kcqr" }, "6.9": { - "version": "6.9.5", - "hash": "sha256:1ccm5w2x3faln5d0jj954xf99x7hn74ihk5zv6di99h3a2mv87x5" + "version": "6.9.6", + "hash": "sha256:0jvbv5g9xx76a4ni0b66gzj5i2y77gpmfdg0mdsg564rp3i6chsx" } } diff --git a/pkgs/os-specific/linux/kernel/linux-rt-5.15.nix b/pkgs/os-specific/linux/kernel/linux-rt-5.15.nix index 47634d116e9ac..127d7e6635138 100644 --- a/pkgs/os-specific/linux/kernel/linux-rt-5.15.nix +++ b/pkgs/os-specific/linux/kernel/linux-rt-5.15.nix @@ -6,7 +6,7 @@ , ... } @ args: let - version = "5.15.158-rt76"; # updated by ./update-rt.sh + version = "5.15.160-rt77"; # updated by ./update-rt.sh branch = lib.versions.majorMinor version; kversion = builtins.elemAt (lib.splitString "-" version) 0; in buildLinux (args // { @@ -19,14 +19,14 @@ in buildLinux (args // { src = fetchurl { url = "mirror://kernel/linux/kernel/v5.x/linux-${kversion}.tar.xz"; - sha256 = "1inmdpif3qf1blmvjj4i7y42bylvhv0wyj3b0apq12zxlj1iq1zr"; + sha256 = "018v19a7rhzc4szybzzn86jlnk42x7jm6xkadfd2d3xq6f7727pl"; }; kernelPatches = let rt-patch = { name = "rt"; patch = fetchurl { url = "mirror://kernel/linux/kernel/projects/rt/${branch}/older/patch-${version}.patch.xz"; - sha256 = "17kw7cs1p0qgqf911prn3472c1j7r01g0mzqxsxpkdvhawxps7wy"; + sha256 = "0id4m1k1xq84bxgnchm8r2iwfqw6nacv5n1ksgyzj6q6v66ik3wk"; }; }; in [ rt-patch ] ++ kernelPatches; diff --git a/pkgs/os-specific/linux/kernel/linux-rt-6.1.nix b/pkgs/os-specific/linux/kernel/linux-rt-6.1.nix index 0427f9c15986d..a515cc1924fd9 100644 --- a/pkgs/os-specific/linux/kernel/linux-rt-6.1.nix +++ b/pkgs/os-specific/linux/kernel/linux-rt-6.1.nix @@ -6,7 +6,7 @@ , ... } @ args: let - version = "6.1.92-rt32"; # updated by ./update-rt.sh + version = "6.1.94-rt33"; # updated by ./update-rt.sh branch = lib.versions.majorMinor version; kversion = builtins.elemAt (lib.splitString "-" version) 0; in buildLinux (args // { @@ -19,14 +19,14 @@ in buildLinux (args // { src = fetchurl { url = "mirror://kernel/linux/kernel/v6.x/linux-${kversion}.tar.xz"; - sha256 = "1j9n8gk76nn4gw42iba5zgghr360gb9n1mslr5dyv76wpwkz86ch"; + sha256 = "0sakp5k4q2xfd3la7j8s2rcbvndh6fdqgzz5ivyqf0df4anp3siq"; }; kernelPatches = let rt-patch = { name = "rt"; patch = fetchurl { url = "mirror://kernel/linux/kernel/projects/rt/${branch}/older/patch-${version}.patch.xz"; - sha256 = "00qa6l4jvkdny276jnwnra5dkagnp3qr43amf2mpqx3kdfw28g1q"; + sha256 = "0yawgw6s8zd6a2n165aqg861giamgpsissj9mw6ax3a7wvg19zjr"; }; }; in [ rt-patch ] ++ kernelPatches; diff --git a/pkgs/os-specific/linux/kernel/linux-rt-6.6.nix b/pkgs/os-specific/linux/kernel/linux-rt-6.6.nix index 57c268fe397e0..b0cda7d0710be 100644 --- a/pkgs/os-specific/linux/kernel/linux-rt-6.6.nix +++ b/pkgs/os-specific/linux/kernel/linux-rt-6.6.nix @@ -6,7 +6,7 @@ , ... } @ args: let - version = "6.6.32-rt32"; # updated by ./update-rt.sh + version = "6.6.34-rt33"; # updated by ./update-rt.sh branch = lib.versions.majorMinor version; kversion = builtins.elemAt (lib.splitString "-" version) 0; in buildLinux (args // { @@ -19,14 +19,14 @@ in buildLinux (args // { src = fetchurl { url = "mirror://kernel/linux/kernel/v6.x/linux-${kversion}.tar.xz"; - sha256 = "1qbc8dqmk2xs1cz968rysw5xvhq3lj8g0pxp48fr2qbzy3m29a5a"; + sha256 = "180v8q5376gl6zmjd54qcb1wpmz7cq299bdbhmz738rsb67yrq64"; }; kernelPatches = let rt-patch = { name = "rt"; patch = fetchurl { url = "mirror://kernel/linux/kernel/projects/rt/${branch}/older/patch-${version}.patch.xz"; - sha256 = "0hv2z6d2gw7hqfzw6dgrzxlirk4yifcxbmx71hxlvd9l2vgp72q5"; + sha256 = "1sbbdv3mcca04g27vc7n4xv4kfhn9nz8xrhzzwc2r3f2x83ficwp"; }; }; in [ rt-patch ] ++ kernelPatches; diff --git a/pkgs/os-specific/linux/kernel/manual-config.nix b/pkgs/os-specific/linux/kernel/manual-config.nix index 3060ff9ef775a..323b77e851404 100644 --- a/pkgs/os-specific/linux/kernel/manual-config.nix +++ b/pkgs/os-specific/linux/kernel/manual-config.nix @@ -1,5 +1,5 @@ { lib, stdenv, buildPackages, runCommand, nettools, bc, bison, flex, perl, rsync, gmp, libmpc, mpfr, openssl -, libelf, cpio, elfutils, zstd, python3Minimal, zlib, pahole, kmod, ubootTools +, cpio, elfutils, zstd, python3Minimal, zlib, pahole, kmod, ubootTools , fetchpatch , rustc, rust-bindgen, rustPlatform }: @@ -120,7 +120,7 @@ let moduleBuildDependencies = [ pahole perl - libelf + elfutils # module makefiles often run uname commands to find out the kernel version (buildPackages.deterministic-uname.override { inherit modDirVersion; }) ] @@ -142,13 +142,24 @@ let inherit src; depsBuildBuild = [ buildPackages.stdenv.cc ]; - nativeBuildInputs = [ perl bc nettools openssl rsync gmp libmpc mpfr zstd python3Minimal kmod ] - ++ optional needsUbootTools ubootTools - ++ optional (lib.versionOlder version "5.8") libelf - ++ optionals (lib.versionAtLeast version "4.16") [ bison flex ] - ++ optionals (lib.versionAtLeast version "5.2") [ cpio pahole zlib ] - ++ optional (lib.versionAtLeast version "5.8") elfutils - ++ optionals withRust [ rustc rust-bindgen ]; + nativeBuildInputs = [ + bison + flex + perl + bc + nettools + openssl + rsync + gmp + libmpc + mpfr + elfutils + zstd + python3Minimal + kmod + ] ++ optional needsUbootTools ubootTools + ++ optionals (lib.versionAtLeast version "5.2") [ cpio pahole zlib ] + ++ optionals withRust [ rustc rust-bindgen ]; RUST_LIB_SRC = lib.optionalString withRust rustPlatform.rustLibSrc; @@ -400,9 +411,6 @@ let }; in -assert lib.versionOlder version "5.8" -> libelf != null; -assert lib.versionAtLeast version "5.8" -> elfutils != null; - stdenv.mkDerivation ((drvAttrs config stdenv.hostPlatform.linux-kernel kernelPatches configfile) // { inherit pname version; diff --git a/pkgs/os-specific/linux/kernel/zen-kernels.nix b/pkgs/os-specific/linux/kernel/zen-kernels.nix index 270a608c84cd5..9d15662162607 100644 --- a/pkgs/os-specific/linux/kernel/zen-kernels.nix +++ b/pkgs/os-specific/linux/kernel/zen-kernels.nix @@ -4,9 +4,9 @@ let # comments with variant added for update script # ./update-zen.py zen zenVariant = { - version = "6.9.5"; #zen + version = "6.9.6"; #zen suffix = "zen1"; #zen - sha256 = "16dm07xd5x5kbn3yk8q2kqwby67953p40ja0akrg31hycz8sgbqq"; #zen + sha256 = "09s3h4wiqfh8nsb1xw78qn2pqdjm8cff89f1q8r2p8hfzs6zpc1b"; #zen isLqx = false; }; # ./update-zen.py lqx diff --git a/pkgs/os-specific/linux/kexec-tools/default.nix b/pkgs/os-specific/linux/kexec-tools/default.nix index caecc7f9c10ef..fb5911a68053c 100644 --- a/pkgs/os-specific/linux/kexec-tools/default.nix +++ b/pkgs/os-specific/linux/kexec-tools/default.nix @@ -43,6 +43,6 @@ stdenv.mkDerivation rec { "riscv64-linux" "riscv32-linux" "sparc-linux" "sparc64-linux" ]; - license = licenses.gpl2; + license = licenses.gpl2Only; }; } diff --git a/pkgs/os-specific/linux/ksmbd-tools/default.nix b/pkgs/os-specific/linux/ksmbd-tools/default.nix index de5d15a0c75aa..fa4bdbd9e66d5 100644 --- a/pkgs/os-specific/linux/ksmbd-tools/default.nix +++ b/pkgs/os-specific/linux/ksmbd-tools/default.nix @@ -35,7 +35,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Userspace utilities for the ksmbd kernel SMB server"; homepage = "https://www.kernel.org/doc/html/latest/filesystems/cifs/ksmbd.html"; - license = licenses.gpl2; + license = licenses.gpl2Only; platforms = platforms.linux; }; } diff --git a/pkgs/os-specific/linux/latencytop/default.nix b/pkgs/os-specific/linux/latencytop/default.nix index 023140e1f482b..43d1fddde9272 100644 --- a/pkgs/os-specific/linux/latencytop/default.nix +++ b/pkgs/os-specific/linux/latencytop/default.nix @@ -26,7 +26,7 @@ stdenv.mkDerivation rec { homepage = "http://latencytop.org"; description = "Tool to show kernel reports on latencies (LATENCYTOP option)"; mainProgram = "latencytop"; - license = lib.licenses.gpl2; + license = lib.licenses.gpl2Only; maintainers = [ lib.maintainers.viric ]; platforms = lib.platforms.linux; }; diff --git a/pkgs/os-specific/linux/libpsm2/default.nix b/pkgs/os-specific/linux/libpsm2/default.nix index 96fa03cf8b056..ee47968352ae4 100644 --- a/pkgs/os-specific/linux/libpsm2/default.nix +++ b/pkgs/os-specific/linux/libpsm2/default.nix @@ -41,7 +41,7 @@ stdenv.mkDerivation rec { meta = with lib; { homepage = "https://github.com/intel/opa-psm2"; description = "PSM2 library supports a number of fabric media and stacks"; - license = with licenses; [ gpl2 bsd3 ]; + license = with licenses; [ gpl2Only bsd3 ]; platforms = [ "x86_64-linux" ]; maintainers = [ maintainers.bzizou ]; }; diff --git a/pkgs/os-specific/linux/libvolume_id/default.nix b/pkgs/os-specific/linux/libvolume_id/default.nix index 653094c91884f..718bd9cec89ca 100644 --- a/pkgs/os-specific/linux/libvolume_id/default.nix +++ b/pkgs/os-specific/linux/libvolume_id/default.nix @@ -21,7 +21,7 @@ stdenv.mkDerivation rec { meta = with lib; { platforms = platforms.linux; - license = licenses.gpl2; + license = licenses.gpl2Only; homepage = "http://www.marcuscom.com/downloads/"; }; } diff --git a/pkgs/os-specific/linux/lightum/default.nix b/pkgs/os-specific/linux/lightum/default.nix index 46dd76e0d277d..f1f95d5563b01 100644 --- a/pkgs/os-specific/linux/lightum/default.nix +++ b/pkgs/os-specific/linux/lightum/default.nix @@ -36,7 +36,7 @@ stdenv.mkDerivation { description = "MacBook automatic light sensor daemon"; mainProgram = "lightum"; homepage = "https://github.com/poliva/lightum"; - license = lib.licenses.gpl2; + license = lib.licenses.gpl2Plus; maintainers = with lib.maintainers; [ puffnfresh ]; platforms = lib.platforms.linux; }; diff --git a/pkgs/os-specific/linux/liquidtux/default.nix b/pkgs/os-specific/linux/liquidtux/default.nix index 317801bb3cddb..ca4fb27c8f199 100644 --- a/pkgs/os-specific/linux/liquidtux/default.nix +++ b/pkgs/os-specific/linux/liquidtux/default.nix @@ -26,7 +26,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Linux kernel hwmon drivers for AIO liquid coolers and other devices"; homepage = "https://github.com/liquidctl/liquidtux"; - license = licenses.gpl2; + license = licenses.gpl2Only; platforms = [ "x86_64-linux" "i686-linux" ]; maintainers = with maintainers; [ nickhu ]; broken = lib.versionOlder kernel.version "5.10"; diff --git a/pkgs/os-specific/linux/lksctp-tools/default.nix b/pkgs/os-specific/linux/lksctp-tools/default.nix index 24915143fbd0d..f6a91c663a05d 100644 --- a/pkgs/os-specific/linux/lksctp-tools/default.nix +++ b/pkgs/os-specific/linux/lksctp-tools/default.nix @@ -12,7 +12,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Linux Kernel Stream Control Transmission Protocol Tools"; homepage = "https://lksctp.sourceforge.net/"; - license = with licenses; [ gpl2 lgpl21 ]; # library is lgpl21 + license = with licenses; [ gpl2Plus lgpl21 ]; # library is lgpl21 platforms = platforms.linux; }; } diff --git a/pkgs/os-specific/linux/lockdep/default.nix b/pkgs/os-specific/linux/lockdep/default.nix index be3967f0a8587..971ba71d8a759 100644 --- a/pkgs/os-specific/linux/lockdep/default.nix +++ b/pkgs/os-specific/linux/lockdep/default.nix @@ -61,7 +61,7 @@ stdenv.mkDerivation rec { description = "Userspace locking validation tool built on the Linux kernel"; mainProgram = "lockdep"; homepage = "https://kernel.org/"; - license = lib.licenses.gpl2; + license = lib.licenses.gpl2Only; platforms = lib.platforms.linux; maintainers = [ lib.maintainers.thoughtpolice ]; }; diff --git a/pkgs/os-specific/linux/lsscsi/default.nix b/pkgs/os-specific/linux/lsscsi/default.nix index d87820f246649..11826a105669e 100644 --- a/pkgs/os-specific/linux/lsscsi/default.nix +++ b/pkgs/os-specific/linux/lsscsi/default.nix @@ -14,7 +14,7 @@ stdenv.mkDerivation rec { ''; meta = with lib; { - license = licenses.gpl2; + license = licenses.gpl2Plus; platforms = platforms.linux; }; } diff --git a/pkgs/os-specific/linux/lvm2/common.nix b/pkgs/os-specific/linux/lvm2/common.nix index caafa52a81738..9cba67ee2b39d 100644 --- a/pkgs/os-specific/linux/lvm2/common.nix +++ b/pkgs/os-specific/linux/lvm2/common.nix @@ -155,7 +155,7 @@ stdenv.mkDerivation rec { homepage = "http://sourceware.org/lvm2/"; description = "Tools to support Logical Volume Management (LVM) on Linux"; platforms = platforms.linux; - license = with licenses; [ gpl2 bsd2 lgpl21 ]; + license = with licenses; [ gpl2Only bsd2 lgpl21 ]; maintainers = with maintainers; [ raskin ajs124 ] ++ teams.helsinki-systems.members; }; } diff --git a/pkgs/os-specific/linux/mba6x_bl/default.nix b/pkgs/os-specific/linux/mba6x_bl/default.nix index 3add5eb227f5e..47466dc54051a 100644 --- a/pkgs/os-specific/linux/mba6x_bl/default.nix +++ b/pkgs/os-specific/linux/mba6x_bl/default.nix @@ -24,7 +24,7 @@ stdenv.mkDerivation { meta = with lib; { description = "MacBook Air 6,1 and 6,2 (mid 2013) backlight driver"; homepage = "https://github.com/patjak/mba6x_bl"; - license = licenses.gpl2; + license = licenses.gpl2Only; platforms = platforms.linux; maintainers = [ maintainers.simonvandel ]; }; diff --git a/pkgs/os-specific/linux/mceinject/default.nix b/pkgs/os-specific/linux/mceinject/default.nix index c7c8508cb41bb..01d230e3335a9 100644 --- a/pkgs/os-specific/linux/mceinject/default.nix +++ b/pkgs/os-specific/linux/mceinject/default.nix @@ -32,7 +32,7 @@ stdenv.mkDerivation rec { kernel machine check handler. ''; homepage = "https://github.com/andikleen/mce-inject/"; - license = licenses.gpl2; + license = licenses.gpl2Only; maintainers = with maintainers; [ arkivm ]; platforms = platforms.linux; }; diff --git a/pkgs/os-specific/linux/mdadm/default.nix b/pkgs/os-specific/linux/mdadm/default.nix index 7150930cb5619..cc26b020235e8 100644 --- a/pkgs/os-specific/linux/mdadm/default.nix +++ b/pkgs/os-specific/linux/mdadm/default.nix @@ -64,7 +64,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Programs for managing RAID arrays under Linux"; homepage = "https://git.kernel.org/pub/scm/utils/mdadm/mdadm.git"; - license = licenses.gpl2; + license = licenses.gpl2Plus; mainProgram = "mdadm"; maintainers = with maintainers; [ ekleog ]; platforms = platforms.linux; diff --git a/pkgs/os-specific/linux/metastore/default.nix b/pkgs/os-specific/linux/metastore/default.nix index 76e4ae8932876..999c771fcfafb 100644 --- a/pkgs/os-specific/linux/metastore/default.nix +++ b/pkgs/os-specific/linux/metastore/default.nix @@ -18,7 +18,7 @@ stdenv.mkDerivation rec { description = "Store and restore metadata from a filesystem"; mainProgram = "metastore"; homepage = "https://software.przemoc.net/#metastore"; - license = licenses.gpl2; + license = licenses.gpl2Only; maintainers = with maintainers; [ sstef ]; platforms = platforms.linux; }; diff --git a/pkgs/os-specific/linux/microcode/iucode-tool.nix b/pkgs/os-specific/linux/microcode/iucode-tool.nix index 316aaa22932dc..d38fa0a488950 100644 --- a/pkgs/os-specific/linux/microcode/iucode-tool.nix +++ b/pkgs/os-specific/linux/microcode/iucode-tool.nix @@ -29,7 +29,7 @@ stdenv.mkDerivation rec { description = "Intel® 64 and IA-32 processor microcode tool"; mainProgram = "iucode_tool"; homepage = "https://gitlab.com/iucode-tool/iucode-tool"; - license = licenses.gpl2; + license = licenses.gpl2Plus; maintainers = with maintainers; [ peterhoeg ]; platforms = [ "x86_64-linux" "i686-linux" ]; }; diff --git a/pkgs/os-specific/linux/mingetty/default.nix b/pkgs/os-specific/linux/mingetty/default.nix index eff1bf50a361e..bbae8f73e316a 100644 --- a/pkgs/os-specific/linux/mingetty/default.nix +++ b/pkgs/os-specific/linux/mingetty/default.nix @@ -21,7 +21,7 @@ stdenv.mkDerivation rec { meta = with lib; { homepage = "https://sourceforge.net/projects/mingetty"; - license = licenses.gpl2; + license = licenses.gpl2Plus; platforms = platforms.linux; }; } diff --git a/pkgs/os-specific/linux/minimal-bootstrap/linux-headers/default.nix b/pkgs/os-specific/linux/minimal-bootstrap/linux-headers/default.nix index 6addd11554d08..965803c40d8f8 100644 --- a/pkgs/os-specific/linux/minimal-bootstrap/linux-headers/default.nix +++ b/pkgs/os-specific/linux/minimal-bootstrap/linux-headers/default.nix @@ -33,7 +33,7 @@ bash.runCommand "${pname}-${version}" { meta = with lib; { description = "Header files and scripts for Linux kernel"; - license = licenses.gpl2; + license = licenses.gpl2Only; maintainers = teams.minimal-bootstrap.members; platforms = platforms.linux; }; diff --git a/pkgs/os-specific/linux/mkinitcpio-nfs-utils/default.nix b/pkgs/os-specific/linux/mkinitcpio-nfs-utils/default.nix index da2ba4b9ff2de..0e7bb127dbb9a 100644 --- a/pkgs/os-specific/linux/mkinitcpio-nfs-utils/default.nix +++ b/pkgs/os-specific/linux/mkinitcpio-nfs-utils/default.nix @@ -20,7 +20,7 @@ stdenv.mkDerivation rec { meta = with lib; { homepage = "https://archlinux.org/"; description = "ipconfig and nfsmount tools for root on NFS, ported from klibc"; - license = licenses.gpl2; + license = licenses.gpl2Only; platforms = platforms.linux; maintainers = with maintainers; [ abbradar ]; }; diff --git a/pkgs/os-specific/linux/msr-tools/default.nix b/pkgs/os-specific/linux/msr-tools/default.nix index 1e6a55a4d6560..a96a74c764c4e 100644 --- a/pkgs/os-specific/linux/msr-tools/default.nix +++ b/pkgs/os-specific/linux/msr-tools/default.nix @@ -19,7 +19,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Tool to read/write from/to MSR CPU registers on Linux"; - license = licenses.gpl2; + license = licenses.gpl2Plus; platforms = platforms.linux; maintainers = with maintainers; [ peterhoeg ]; }; diff --git a/pkgs/os-specific/linux/mstpd/default.nix b/pkgs/os-specific/linux/mstpd/default.nix index 389acdf91e6e9..0f82fb8fcbdd4 100644 --- a/pkgs/os-specific/linux/mstpd/default.nix +++ b/pkgs/os-specific/linux/mstpd/default.nix @@ -31,7 +31,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Multiple Spanning Tree Protocol daemon"; homepage = "https://github.com/mstpd/mstpd"; - license = licenses.gpl2; + license = licenses.gpl2Plus; platforms = platforms.linux; }; } diff --git a/pkgs/os-specific/linux/multipath-tools/default.nix b/pkgs/os-specific/linux/multipath-tools/default.nix index 20b6ee0d7eb15..9fe8630e22757 100644 --- a/pkgs/os-specific/linux/multipath-tools/default.nix +++ b/pkgs/os-specific/linux/multipath-tools/default.nix @@ -84,7 +84,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Tools for the Linux multipathing storage driver"; homepage = "http://christophe.varoqui.free.fr/"; - license = licenses.gpl2; + license = licenses.gpl2Plus; platforms = platforms.linux; }; } diff --git a/pkgs/os-specific/linux/netatop/default.nix b/pkgs/os-specific/linux/netatop/default.nix index 68386173ed505..b1a9d244a8d85 100644 --- a/pkgs/os-specific/linux/netatop/default.nix +++ b/pkgs/os-specific/linux/netatop/default.nix @@ -49,7 +49,7 @@ stdenv.mkDerivation { description = "Network monitoring module for atop"; mainProgram = "netatopd"; homepage = "https://www.atoptool.nl/downloadnetatop.php"; - license = lib.licenses.gpl2; + license = lib.licenses.gpl2Only; platforms = lib.platforms.linux; maintainers = with lib.maintainers; [ viric ]; }; diff --git a/pkgs/os-specific/linux/nfs-utils/default.nix b/pkgs/os-specific/linux/nfs-utils/default.nix index 4fde1dcf910d8..88a4f33b2f3f0 100644 --- a/pkgs/os-specific/linux/nfs-utils/default.nix +++ b/pkgs/os-specific/linux/nfs-utils/default.nix @@ -124,7 +124,7 @@ stdenv.mkDerivation rec { ''; homepage = "https://linux-nfs.org/"; - license = licenses.gpl2; + license = licenses.gpl2Plus; platforms = platforms.linux; maintainers = with maintainers; [ abbradar ]; }; diff --git a/pkgs/os-specific/linux/nss_ldap/default.nix b/pkgs/os-specific/linux/nss_ldap/default.nix index 7366932d1e676..784ecf2b39cce 100644 --- a/pkgs/os-specific/linux/nss_ldap/default.nix +++ b/pkgs/os-specific/linux/nss_ldap/default.nix @@ -39,7 +39,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "LDAP module for the Solaris Nameservice Switch (NSS)"; - license = licenses.gpl2; + license = licenses.gpl2Plus; platforms = platforms.linux; }; } diff --git a/pkgs/os-specific/linux/numactl/default.nix b/pkgs/os-specific/linux/numactl/default.nix index 16e2ae51f9572..142dd064e0f91 100644 --- a/pkgs/os-specific/linux/numactl/default.nix +++ b/pkgs/os-specific/linux/numactl/default.nix @@ -27,7 +27,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Library and tools for non-uniform memory access (NUMA) machines"; homepage = "https://github.com/numactl/numactl"; - license = with licenses; [ gpl2 lgpl21 ]; # libnuma is lgpl21 + license = with licenses; [ gpl2Only lgpl21 ]; # libnuma is lgpl21 platforms = platforms.linux; }; } diff --git a/pkgs/os-specific/linux/nvidiabl/default.nix b/pkgs/os-specific/linux/nvidiabl/default.nix index 0f4d485a4edc6..68991e1289598 100644 --- a/pkgs/os-specific/linux/nvidiabl/default.nix +++ b/pkgs/os-specific/linux/nvidiabl/default.nix @@ -29,7 +29,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Linux driver for setting the backlight brightness on laptops using NVIDIA GPU"; homepage = "https://github.com/yorickvP/nvidiabl"; - license = licenses.gpl2; + license = licenses.gpl2Plus; platforms = [ "x86_64-linux" "i686-linux" ]; maintainers = with maintainers; [ yorickvp ]; broken = kernel.kernelAtLeast "5.18"; diff --git a/pkgs/os-specific/linux/pam_ccreds/default.nix b/pkgs/os-specific/linux/pam_ccreds/default.nix index 359636e742814..1921193d70311 100644 --- a/pkgs/os-specific/linux/pam_ccreds/default.nix +++ b/pkgs/os-specific/linux/pam_ccreds/default.nix @@ -18,7 +18,7 @@ stdenv.mkDerivation rec { homepage = "https://www.padl.com/OSS/pam_ccreds.html"; description = "PAM module to locally authenticate using an enterprise identity when the network is unavailable"; mainProgram = "ccreds_chkpwd"; - license = licenses.gpl2; + license = licenses.gpl2Only; platforms = platforms.linux; }; } diff --git a/pkgs/os-specific/linux/pam_mount/default.nix b/pkgs/os-specific/linux/pam_mount/default.nix index 2ed6829f3614a..81199cb057c69 100644 --- a/pkgs/os-specific/linux/pam_mount/default.nix +++ b/pkgs/os-specific/linux/pam_mount/default.nix @@ -52,7 +52,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "PAM module to mount volumes for a user session"; homepage = "https://pam-mount.sourceforge.net/"; - license = with licenses; [ gpl2 gpl3 lgpl21 lgpl3 ]; + license = with licenses; [ gpl2Plus gpl3 lgpl21 lgpl3 ]; maintainers = with maintainers; [ netali ]; platforms = platforms.linux; }; diff --git a/pkgs/os-specific/linux/paxctl/default.nix b/pkgs/os-specific/linux/paxctl/default.nix index 2f68fa3dc0ccc..e15b17378d9ee 100644 --- a/pkgs/os-specific/linux/paxctl/default.nix +++ b/pkgs/os-specific/linux/paxctl/default.nix @@ -28,7 +28,7 @@ stdenv.mkDerivation rec { description = "Tool for controlling PaX flags on a per binary basis"; mainProgram = "paxctl"; homepage = "https://pax.grsecurity.net"; - license = licenses.gpl2; + license = licenses.gpl2Only; platforms = platforms.all; maintainers = with maintainers; [ thoughtpolice ]; }; diff --git a/pkgs/os-specific/linux/paxtest/default.nix b/pkgs/os-specific/linux/paxtest/default.nix index acea7cbe49f77..b415970a743ef 100644 --- a/pkgs/os-specific/linux/paxtest/default.nix +++ b/pkgs/os-specific/linux/paxtest/default.nix @@ -18,7 +18,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Test various memory protection measures"; mainProgram = "paxtest"; - license = licenses.gpl2; + license = licenses.gpl2Only; platforms = platforms.linux; maintainers = with maintainers; [ copumpkin joachifm ]; }; diff --git a/pkgs/os-specific/linux/pcmciautils/default.nix b/pkgs/os-specific/linux/pcmciautils/default.nix index b5f9d8a0a2c24..bcfb101c6fcb5 100644 --- a/pkgs/os-specific/linux/pcmciautils/default.nix +++ b/pkgs/os-specific/linux/pcmciautils/default.nix @@ -49,7 +49,7 @@ stdenv.mkDerivation rec { the PCMCIA subsystem to behave (almost) as every other hotpluggable bus system. "; - license = lib.licenses.gpl2; + license = lib.licenses.gpl2Only; platforms = lib.platforms.linux; }; } diff --git a/pkgs/os-specific/linux/phc-intel/default.nix b/pkgs/os-specific/linux/phc-intel/default.nix index a0d43b2e0e367..a2e2456ad6e09 100644 --- a/pkgs/os-specific/linux/phc-intel/default.nix +++ b/pkgs/os-specific/linux/phc-intel/default.nix @@ -45,7 +45,7 @@ in stdenv.mkDerivation rec { Intel architectures. ''; homepage = "https://github.com/danielw86dev/phc-intel-dkms"; - license = licenses.gpl2; + license = licenses.gpl2Plus; platforms = [ "x86_64-linux" "i686-linux" ]; broken = lib.versionAtLeast kernel.version "4.18"; }; diff --git a/pkgs/os-specific/linux/piper/default.nix b/pkgs/os-specific/linux/piper/default.nix index dcdc7a363e30e..d646f004893c2 100644 --- a/pkgs/os-specific/linux/piper/default.nix +++ b/pkgs/os-specific/linux/piper/default.nix @@ -35,7 +35,7 @@ python3.pkgs.buildPythonApplication rec { description = "GTK frontend for ratbagd mouse config daemon"; mainProgram = "piper"; homepage = "https://github.com/libratbag/piper"; - license = licenses.gpl2; + license = licenses.gpl2Only; maintainers = with maintainers; [ mvnetbiz ]; platforms = platforms.linux; }; diff --git a/pkgs/os-specific/linux/pm-utils/default.nix b/pkgs/os-specific/linux/pm-utils/default.nix index 9f2eee83d60bf..3eccb6381cd17 100644 --- a/pkgs/os-specific/linux/pm-utils/default.nix +++ b/pkgs/os-specific/linux/pm-utils/default.nix @@ -50,7 +50,7 @@ stdenv.mkDerivation rec { meta = { homepage = "https://pm-utils.freedesktop.org/wiki/"; description = "Small collection of scripts that handle suspend and resume on behalf of HAL"; - license = lib.licenses.gpl2; + license = lib.licenses.gpl2Plus; platforms = lib.platforms.linux; }; } diff --git a/pkgs/os-specific/linux/pmount/default.nix b/pkgs/os-specific/linux/pmount/default.nix index 8267a2d4a7f9d..94ab7b7e3c2db 100644 --- a/pkgs/os-specific/linux/pmount/default.nix +++ b/pkgs/os-specific/linux/pmount/default.nix @@ -40,7 +40,7 @@ stdenv.mkDerivation rec { meta = { homepage = "https://bazaar.launchpad.net/~fourmond/pmount/main/files"; description = "Mount removable devices as normal user"; - license = lib.licenses.gpl2; + license = lib.licenses.gpl2Only; platforms = lib.platforms.linux; }; } diff --git a/pkgs/os-specific/linux/policycoreutils/default.nix b/pkgs/os-specific/linux/policycoreutils/default.nix index 5fdb3583b5cf4..bcb5dafa137b6 100644 --- a/pkgs/os-specific/linux/policycoreutils/default.nix +++ b/pkgs/os-specific/linux/policycoreutils/default.nix @@ -31,7 +31,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "SELinux policy core utilities"; - license = licenses.gpl2; + license = licenses.gpl2Only; inherit (libsepol.meta) homepage platforms maintainers; }; } diff --git a/pkgs/os-specific/linux/pommed-light/default.nix b/pkgs/os-specific/linux/pommed-light/default.nix index eb5a1b1b0edbd..11a5cebc76bfb 100644 --- a/pkgs/os-specific/linux/pommed-light/default.nix +++ b/pkgs/os-specific/linux/pommed-light/default.nix @@ -71,6 +71,6 @@ stdenv.mkDerivation rec { ''; homepage = "https://github.com/bytbox/pommed-light"; platforms = [ "x86_64-linux" ]; - license = lib.licenses.gpl2; + license = lib.licenses.gpl2Only; }; } diff --git a/pkgs/os-specific/linux/power-calibrate/default.nix b/pkgs/os-specific/linux/power-calibrate/default.nix index d2ce5d4d4fa7e..24f7f7f419c13 100644 --- a/pkgs/os-specific/linux/power-calibrate/default.nix +++ b/pkgs/os-specific/linux/power-calibrate/default.nix @@ -21,7 +21,7 @@ stdenv.mkDerivation rec { description = "Tool to calibrate power consumption"; mainProgram = "power-calibrate"; homepage = "https://github.com/ColinIanKing/power-calibrate"; - license = licenses.gpl2; + license = licenses.gpl2Plus; platforms = platforms.linux; maintainers = with maintainers; [ dtzWill ]; }; diff --git a/pkgs/os-specific/linux/powerstat/default.nix b/pkgs/os-specific/linux/powerstat/default.nix index 83f0aa634efa9..b7a88a0d9ec9d 100644 --- a/pkgs/os-specific/linux/powerstat/default.nix +++ b/pkgs/os-specific/linux/powerstat/default.nix @@ -21,7 +21,7 @@ stdenv.mkDerivation rec { description = "Laptop power measuring tool"; mainProgram = "powerstat"; homepage = "https://github.com/ColinIanKing/powerstat"; - license = licenses.gpl2; + license = licenses.gpl2Plus; platforms = platforms.linux; maintainers = with maintainers; [ womfoo ]; }; diff --git a/pkgs/os-specific/linux/procps-ng/default.nix b/pkgs/os-specific/linux/procps-ng/default.nix index e4d245fdc7ce1..70df91d31eee3 100644 --- a/pkgs/os-specific/linux/procps-ng/default.nix +++ b/pkgs/os-specific/linux/procps-ng/default.nix @@ -65,7 +65,7 @@ stdenv.mkDerivation rec { homepage = "https://gitlab.com/procps-ng/procps"; description = "Utilities that give information about processes using the /proc filesystem"; priority = 11; # less than coreutils, which also provides "kill" and "uptime" - license = licenses.gpl2; + license = licenses.gpl2Plus; platforms = platforms.unix; maintainers = [ maintainers.typetetris ]; }; diff --git a/pkgs/os-specific/linux/pscircle/default.nix b/pkgs/os-specific/linux/pscircle/default.nix index 712eea0c3651e..b34a2d7914b32 100644 --- a/pkgs/os-specific/linux/pscircle/default.nix +++ b/pkgs/os-specific/linux/pscircle/default.nix @@ -25,7 +25,7 @@ stdenv.mkDerivation rec { homepage = "https://gitlab.com/mildlyparallel/pscircle"; description = "Visualize Linux processes in a form of a radial tree"; mainProgram = "pscircle"; - license = licenses.gpl2; + license = licenses.gpl2Only; maintainers = [ maintainers.ldesgoui ]; platforms = platforms.linux; }; diff --git a/pkgs/os-specific/linux/rewritefs/default.nix b/pkgs/os-specific/linux/rewritefs/default.nix index e78d5f2d164c8..0626fc0a91a7e 100644 --- a/pkgs/os-specific/linux/rewritefs/default.nix +++ b/pkgs/os-specific/linux/rewritefs/default.nix @@ -25,7 +25,7 @@ stdenv.mkDerivation { description = ''A FUSE filesystem intended to be used like Apache mod_rewrite''; homepage = "https://github.com/sloonz/rewritefs"; - license = licenses.gpl2; + license = licenses.gpl2Only; maintainers = with maintainers; [ rnhmjoj ]; platforms = platforms.linux; }; diff --git a/pkgs/os-specific/linux/rt-tests/default.nix b/pkgs/os-specific/linux/rt-tests/default.nix index a9e3e57d48752..16970a15b1d81 100644 --- a/pkgs/os-specific/linux/rt-tests/default.nix +++ b/pkgs/os-specific/linux/rt-tests/default.nix @@ -29,6 +29,6 @@ stdenv.mkDerivation rec { description = "Suite of real-time tests - cyclictest, hwlatdetect, pip_stress, pi_stress, pmqtest, ptsematest, rt-migrate-test, sendme, signaltest, sigwaittest, svsematest"; platforms = platforms.linux; maintainers = with maintainers; [ poelzi ]; - license = licenses.gpl2; + license = licenses.gpl2Only; }; } diff --git a/pkgs/os-specific/linux/rtl8189es/default.nix b/pkgs/os-specific/linux/rtl8189es/default.nix index 553c6a309682e..8e95ceafd3367 100644 --- a/pkgs/os-specific/linux/rtl8189es/default.nix +++ b/pkgs/os-specific/linux/rtl8189es/default.nix @@ -38,8 +38,8 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Driver for Realtek rtl8189es"; homepage = "https://github.com/jwrdegoede/rtl8189ES_linux"; - license = licenses.gpl2; + license = licenses.gpl2Only; platforms = platforms.linux; - maintainers = with maintainers; [ danielfullmer lheckemann ]; + maintainers = with maintainers; [ danielfullmer ]; }; } diff --git a/pkgs/os-specific/linux/rtl8189fs/default.nix b/pkgs/os-specific/linux/rtl8189fs/default.nix index 5f806069daf97..87b0944c4d326 100644 --- a/pkgs/os-specific/linux/rtl8189fs/default.nix +++ b/pkgs/os-specific/linux/rtl8189fs/default.nix @@ -15,7 +15,7 @@ rtl8189es.overrideAttrs (drv: rec { meta = with lib; { description = "Driver for Realtek rtl8189fs"; homepage = "https://github.com/jwrdegoede/rtl8189ES_linux/tree/rtl8189fs"; - license = licenses.gpl2; + license = licenses.gpl2Only; platforms = platforms.linux; maintainers = with maintainers; [ puffnfresh ]; }; diff --git a/pkgs/os-specific/linux/schedtool/default.nix b/pkgs/os-specific/linux/schedtool/default.nix index d3d009db1714b..0ee35df74449e 100644 --- a/pkgs/os-specific/linux/schedtool/default.nix +++ b/pkgs/os-specific/linux/schedtool/default.nix @@ -17,7 +17,7 @@ stdenv.mkDerivation rec { description = "Query or alter a process' scheduling policy under Linux"; mainProgram = "schedtool"; homepage = "https://freequaos.host.sk/schedtool/"; - license = licenses.gpl2; + license = licenses.gpl2Only; platforms = platforms.linux; maintainers = with maintainers; [ abbradar ]; }; diff --git a/pkgs/os-specific/linux/selinux-python/default.nix b/pkgs/os-specific/linux/selinux-python/default.nix index c50f4ffccd0bb..c8c0a093b97e8 100644 --- a/pkgs/os-specific/linux/selinux-python/default.nix +++ b/pkgs/os-specific/linux/selinux-python/default.nix @@ -44,7 +44,7 @@ stdenv.mkDerivation rec { meta = { description = "SELinux policy core utilities written in Python"; - license = licenses.gpl2; + license = licenses.gpl2Plus; homepage = "https://selinuxproject.org"; platforms = platforms.linux; }; diff --git a/pkgs/os-specific/linux/selinux-sandbox/default.nix b/pkgs/os-specific/linux/selinux-sandbox/default.nix index 0d2843d216a46..7b033694ea264 100644 --- a/pkgs/os-specific/linux/selinux-sandbox/default.nix +++ b/pkgs/os-specific/linux/selinux-sandbox/default.nix @@ -53,7 +53,7 @@ stdenv.mkDerivation rec { meta = { description = "SELinux sandbox utility"; - license = licenses.gpl2; + license = licenses.gpl2Only; homepage = "https://selinuxproject.org"; platforms = platforms.linux; }; diff --git a/pkgs/os-specific/linux/semodule-utils/default.nix b/pkgs/os-specific/linux/semodule-utils/default.nix index 013a9ecb90342..126f927007cd8 100644 --- a/pkgs/os-specific/linux/semodule-utils/default.nix +++ b/pkgs/os-specific/linux/semodule-utils/default.nix @@ -20,7 +20,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "SELinux policy core utilities (packaging additions)"; - license = licenses.gpl2; + license = licenses.gpl2Only; inherit (libsepol.meta) homepage platforms; maintainers = with maintainers; [ RossComputerGuy ]; }; diff --git a/pkgs/os-specific/linux/setools/default.nix b/pkgs/os-specific/linux/setools/default.nix index c815b8d86aa29..5a2f180a0ad96 100644 --- a/pkgs/os-specific/linux/setools/default.nix +++ b/pkgs/os-specific/linux/setools/default.nix @@ -36,7 +36,7 @@ buildPythonApplication rec { meta = { description = "SELinux Policy Analysis Tools"; homepage = "https://github.com/SELinuxProject/setools"; - license = licenses.gpl2; + license = licenses.gpl2Only; platforms = platforms.linux; }; } diff --git a/pkgs/os-specific/linux/smemstat/default.nix b/pkgs/os-specific/linux/smemstat/default.nix index 05ad1ddb03351..a6cdaf978c663 100644 --- a/pkgs/os-specific/linux/smemstat/default.nix +++ b/pkgs/os-specific/linux/smemstat/default.nix @@ -22,7 +22,7 @@ stdenv.mkDerivation rec { description = "Memory usage monitoring tool"; mainProgram = "smemstat"; homepage = "https://github.com/ColinIanKing/smemstat"; - license = licenses.gpl2; + license = licenses.gpl2Plus; platforms = platforms.linux; maintainers = with maintainers; [ womfoo ]; }; diff --git a/pkgs/os-specific/linux/statifier/default.nix b/pkgs/os-specific/linux/statifier/default.nix index 6aa11cad4f250..9c00cdab40164 100644 --- a/pkgs/os-specific/linux/statifier/default.nix +++ b/pkgs/os-specific/linux/statifier/default.nix @@ -20,6 +20,6 @@ multiStdenv.mkDerivation rec { description = "Tool for creating static Linux binaries"; mainProgram = "statifier"; platforms = platforms.linux; - license = licenses.gpl2; + license = licenses.gpl2Only; }; } diff --git a/pkgs/os-specific/linux/sydbox/default.nix b/pkgs/os-specific/linux/sydbox/default.nix index bdaf77147f2ee..7bcb0c565974c 100644 --- a/pkgs/os-specific/linux/sydbox/default.nix +++ b/pkgs/os-specific/linux/sydbox/default.nix @@ -70,7 +70,7 @@ stdenv.mkDerivation rec { meta = with lib; { homepage = "https://sydbox.exherbo.org/"; description = "seccomp-based application sandbox"; - license = licenses.gpl2; + license = licenses.gpl2Only; platforms = platforms.linux; maintainers = with maintainers; [ mvs ]; }; diff --git a/pkgs/os-specific/linux/sysdig/default.nix b/pkgs/os-specific/linux/sysdig/default.nix index 59b48eeb7f715..ff149e771bcbf 100644 --- a/pkgs/os-specific/linux/sysdig/default.nix +++ b/pkgs/os-specific/linux/sysdig/default.nix @@ -135,7 +135,7 @@ in stdenv.mkDerivation { meta = { description = "A tracepoint-based system tracing tool for Linux (with clients for other OSes)"; - license = with lib.licenses; [ asl20 gpl2 mit ]; + license = with lib.licenses; [ asl20 gpl2Only mit ]; maintainers = with lib.maintainers; [ raskin ]; platforms = [ "x86_64-linux" ] ++ lib.platforms.darwin; broken = kernel != null && ((lib.versionOlder kernel.version "4.14") || kernel.isHardened || kernel.isZen); diff --git a/pkgs/os-specific/linux/sysfsutils/default.nix b/pkgs/os-specific/linux/sysfsutils/default.nix index 113ba7939a65a..b0fd24c066b32 100644 --- a/pkgs/os-specific/linux/sysfsutils/default.nix +++ b/pkgs/os-specific/linux/sysfsutils/default.nix @@ -17,7 +17,7 @@ stdenv.mkDerivation rec { filesystem in Linux kernel versions 2.5+ that exposes a system's device tree. ''; - license = with lib.licenses; [ gpl2 lgpl21 ]; + license = with lib.licenses; [ gpl2Plus lgpl21 ]; platforms = lib.platforms.linux; }; } diff --git a/pkgs/os-specific/linux/sysklogd/default.nix b/pkgs/os-specific/linux/sysklogd/default.nix index 09f76956d7fb2..cfccba6fb542c 100644 --- a/pkgs/os-specific/linux/sysklogd/default.nix +++ b/pkgs/os-specific/linux/sysklogd/default.nix @@ -36,6 +36,6 @@ stdenv.mkDerivation rec { meta = with lib; { description = "System logging daemon"; platforms = platforms.linux; - license = licenses.gpl2; + license = licenses.gpl2Plus; }; } diff --git a/pkgs/os-specific/linux/syslinux/default.nix b/pkgs/os-specific/linux/syslinux/default.nix index 6023c6e82ff8e..c1424d01f878d 100644 --- a/pkgs/os-specific/linux/syslinux/default.nix +++ b/pkgs/os-specific/linux/syslinux/default.nix @@ -148,7 +148,7 @@ stdenv.mkDerivation { homepage = "https://www.syslinux.org/"; description = "Lightweight bootloader"; license = licenses.gpl2Plus; - maintainers = [ maintainers.samueldr ]; + maintainers = [ ]; platforms = [ "i686-linux" "x86_64-linux" ]; }; } diff --git a/pkgs/os-specific/linux/tbs/default.nix b/pkgs/os-specific/linux/tbs/default.nix index 4d4a1a96ce5fe..31baf57a4eba8 100644 --- a/pkgs/os-specific/linux/tbs/default.nix +++ b/pkgs/os-specific/linux/tbs/default.nix @@ -63,7 +63,7 @@ stdenv.mkDerivation { meta = with lib; { homepage = "https://www.tbsdtv.com/"; description = "Linux driver for TBSDTV cards"; - license = licenses.gpl2; + license = licenses.gpl2Only; maintainers = with maintainers; [ ck3d ]; priority = -1; broken = kernel.kernelOlder "4.14" || kernel.kernelAtLeast "6.9"; diff --git a/pkgs/os-specific/linux/tiptop/default.nix b/pkgs/os-specific/linux/tiptop/default.nix index a26602b6b44cb..919df3bbedfcd 100644 --- a/pkgs/os-specific/linux/tiptop/default.nix +++ b/pkgs/os-specific/linux/tiptop/default.nix @@ -36,7 +36,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Performance monitoring tool for Linux"; homepage = "http://tiptop.gforge.inria.fr"; - license = licenses.gpl2; + license = licenses.gpl2Only; platforms = platforms.linux; maintainers = [ ]; }; diff --git a/pkgs/os-specific/linux/tmon/default.nix b/pkgs/os-specific/linux/tmon/default.nix index a80724f19eb5a..c4222cfc3a245 100644 --- a/pkgs/os-specific/linux/tmon/default.nix +++ b/pkgs/os-specific/linux/tmon/default.nix @@ -21,7 +21,7 @@ stdenv.mkDerivation { description = "Monitoring and Testing Tool for Linux kernel thermal subsystem"; mainProgram = "tmon"; homepage = "https://www.kernel.org/"; - license = licenses.gpl2; + license = licenses.gpl2Only; platforms = platforms.linux; }; } diff --git a/pkgs/os-specific/linux/tp_smapi/default.nix b/pkgs/os-specific/linux/tp_smapi/default.nix index d9c5921d46551..b0f760e3b00ad 100644 --- a/pkgs/os-specific/linux/tp_smapi/default.nix +++ b/pkgs/os-specific/linux/tp_smapi/default.nix @@ -59,7 +59,7 @@ stdenv.mkDerivation rec { meta = { description = "IBM ThinkPad hardware functions driver"; homepage = "https://github.com/linux-thinkpad/tp_smapi"; - license = lib.licenses.gpl2; + license = lib.licenses.gpl2Plus; maintainers = [ ]; # driver is only ment for linux thinkpads i think bellow platforms should cover it. platforms = [ "x86_64-linux" "i686-linux" ]; diff --git a/pkgs/os-specific/linux/trace-cmd/kernelshark.nix b/pkgs/os-specific/linux/trace-cmd/kernelshark.nix index 4251235469ccc..211e03637d4ee 100644 --- a/pkgs/os-specific/linux/trace-cmd/kernelshark.nix +++ b/pkgs/os-specific/linux/trace-cmd/kernelshark.nix @@ -28,7 +28,7 @@ stdenv.mkDerivation (finalAttrs: { meta = with lib; { description = "GUI for trace-cmd which is an interface for the Linux kernel ftrace subsystem"; homepage = "https://kernelshark.org/"; - license = licenses.gpl2; + license = licenses.gpl2Only; platforms = platforms.linux; maintainers = with maintainers; [ basvandijk ]; }; diff --git a/pkgs/os-specific/linux/tunctl/default.nix b/pkgs/os-specific/linux/tunctl/default.nix index 5e7fea75b6ab8..40d1aa572487a 100644 --- a/pkgs/os-specific/linux/tunctl/default.nix +++ b/pkgs/os-specific/linux/tunctl/default.nix @@ -19,7 +19,7 @@ stdenv.mkDerivation rec { homepage = "https://tunctl.sourceforge.net/"; description = "Utility to set up and maintain TUN/TAP network interfaces"; mainProgram = "tunctl"; - license = lib.licenses.gpl2; + license = lib.licenses.gpl2Only; platforms = lib.platforms.linux; }; } diff --git a/pkgs/os-specific/linux/turbostat/default.nix b/pkgs/os-specific/linux/turbostat/default.nix index 4c51bca386d24..92aafcfe173f6 100644 --- a/pkgs/os-specific/linux/turbostat/default.nix +++ b/pkgs/os-specific/linux/turbostat/default.nix @@ -15,7 +15,7 @@ stdenv.mkDerivation { description = "Report processor frequency and idle statistics"; mainProgram = "turbostat"; homepage = "https://www.kernel.org/"; - license = licenses.gpl2; + license = licenses.gpl2Only; platforms = [ "i686-linux" "x86_64-linux" ]; # x86-specific }; } diff --git a/pkgs/os-specific/linux/ulogd/default.nix b/pkgs/os-specific/linux/ulogd/default.nix index 533db8f19c84a..291876cc92d24 100644 --- a/pkgs/os-specific/linux/ulogd/default.nix +++ b/pkgs/os-specific/linux/ulogd/default.nix @@ -72,7 +72,7 @@ stdenv.mkDerivation rec { ''; homepage = "https://www.netfilter.org/projects/ulogd/index.html"; - license = licenses.gpl2; + license = licenses.gpl2Only; platforms = platforms.linux; maintainers = with maintainers; [ p-h ]; }; diff --git a/pkgs/os-specific/linux/undervolt/default.nix b/pkgs/os-specific/linux/undervolt/default.nix index 4066139c6fc3f..045667c3e3a44 100644 --- a/pkgs/os-specific/linux/undervolt/default.nix +++ b/pkgs/os-specific/linux/undervolt/default.nix @@ -22,7 +22,7 @@ python3Packages.buildPythonApplication rec { voltage offset to one of 5 voltage planes, and override your systems temperature target (CPU will throttle when this temperature is reached). ''; - license = licenses.gpl2; + license = licenses.gpl2Only; platforms = [ "x86_64-linux" ]; }; } diff --git a/pkgs/os-specific/linux/v4l2-relayd/default.nix b/pkgs/os-specific/linux/v4l2-relayd/default.nix index 77d7034b863be..c1d48f3094095 100644 --- a/pkgs/os-specific/linux/v4l2-relayd/default.nix +++ b/pkgs/os-specific/linux/v4l2-relayd/default.nix @@ -41,7 +41,7 @@ stdenv.mkDerivation rec { description = "Streaming relay for v4l2loopback using GStreamer"; mainProgram = "v4l2-relayd"; homepage = "https://git.launchpad.net/v4l2-relayd"; - license = licenses.gpl2; + license = licenses.gpl2Only; maintainers = with maintainers; [ betaboon ]; platforms = [ "x86_64-linux" ]; }; diff --git a/pkgs/os-specific/linux/v86d/default.nix b/pkgs/os-specific/linux/v86d/default.nix index d59e8f52ff2b5..12e9b57d001cb 100644 --- a/pkgs/os-specific/linux/v86d/default.nix +++ b/pkgs/os-specific/linux/v86d/default.nix @@ -41,7 +41,7 @@ in stdenv.mkDerivation rec { description = "Daemon to run x86 code in an emulated environment"; mainProgram = "v86d"; homepage = "https://github.com/mjanusz/v86d"; - license = licenses.gpl2; + license = licenses.gpl2Only; maintainers = with maintainers; [ codyopel ]; platforms = [ "i686-linux" "x86_64-linux" ]; }; diff --git a/pkgs/os-specific/linux/virtio_vmmci/default.nix b/pkgs/os-specific/linux/virtio_vmmci/default.nix index a0db1483c5499..abb359fe06e4c 100644 --- a/pkgs/os-specific/linux/virtio_vmmci/default.nix +++ b/pkgs/os-specific/linux/virtio_vmmci/default.nix @@ -28,7 +28,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "OpenBSD VMM Control Interface (vmmci) for Linux"; homepage = "https://github.com/voutilad/virtio_vmmci"; - license = licenses.gpl2; + license = licenses.gpl2Plus; maintainers = with maintainers; [ qbit ]; platforms = platforms.linux; }; diff --git a/pkgs/os-specific/linux/vmm_clock/default.nix b/pkgs/os-specific/linux/vmm_clock/default.nix index 7ce99f40df1fd..686a20ada2438 100644 --- a/pkgs/os-specific/linux/vmm_clock/default.nix +++ b/pkgs/os-specific/linux/vmm_clock/default.nix @@ -29,7 +29,7 @@ stdenv.mkDerivation rec { description = "Experimental implementation of a kvmclock-derived clocksource for Linux guests under OpenBSD's hypervisor"; homepage = "https://github.com/voutilad/vmm_clock"; - license = licenses.gpl2; + license = licenses.gpl2Plus; maintainers = with maintainers; [ qbit ]; platforms = [ "i686-linux" "x86_64-linux" ]; }; diff --git a/pkgs/os-specific/linux/wireless-tools/default.nix b/pkgs/os-specific/linux/wireless-tools/default.nix index e95506461a4bd..33318b16bb819 100644 --- a/pkgs/os-specific/linux/wireless-tools/default.nix +++ b/pkgs/os-specific/linux/wireless-tools/default.nix @@ -21,6 +21,6 @@ stdenv.mkDerivation rec { description = "Wireless tools for Linux"; homepage = "https://hewlettpackard.github.io/wireless-tools/Tools.html"; platforms = lib.platforms.linux; - license = lib.licenses.gpl2; + license = lib.licenses.gpl2Only; }; } diff --git a/pkgs/os-specific/linux/x86_energy_perf_policy/default.nix b/pkgs/os-specific/linux/x86_energy_perf_policy/default.nix index cbe2a8134e60f..309d9865bebc6 100644 --- a/pkgs/os-specific/linux/x86_energy_perf_policy/default.nix +++ b/pkgs/os-specific/linux/x86_energy_perf_policy/default.nix @@ -21,7 +21,7 @@ stdenv.mkDerivation { description = "Set the energy versus performance policy preference bias on recent X86 processors"; mainProgram = "x86_energy_perf_policy"; homepage = "https://www.kernel.org/"; - license = licenses.gpl2; + license = licenses.gpl2Only; platforms = [ "i686-linux" "x86_64-linux" ]; # x86-specific }; } diff --git a/pkgs/os-specific/linux/x86info/default.nix b/pkgs/os-specific/linux/x86info/default.nix index f330fbbe6c7a4..86830c851e55d 100644 --- a/pkgs/os-specific/linux/x86info/default.nix +++ b/pkgs/os-specific/linux/x86info/default.nix @@ -49,7 +49,7 @@ stdenv.mkDerivation rec { frequency, and identify the cache sizes and layout. ''; platforms = [ "i686-linux" "x86_64-linux" ]; - license = lib.licenses.gpl2; + license = lib.licenses.gpl2Only; homepage = "https://github.com/kernelslacker/x86info"; maintainers = with lib.maintainers; [ jcumming ]; }; diff --git a/pkgs/os-specific/linux/xone/default.nix b/pkgs/os-specific/linux/xone/default.nix index fdc9990fb63d9..b61b242291882 100644 --- a/pkgs/os-specific/linux/xone/default.nix +++ b/pkgs/os-specific/linux/xone/default.nix @@ -31,7 +31,7 @@ stdenv.mkDerivation (finalAttrs: { meta = with lib; { description = "Linux kernel driver for Xbox One and Xbox Series X|S accessories"; homepage = "https://github.com/medusalix/xone"; - license = licenses.gpl2; + license = licenses.gpl2Plus; maintainers = with lib.maintainers; [ rhysmdnz ]; platforms = platforms.linux; }; diff --git a/pkgs/os-specific/linux/xsensors/default.nix b/pkgs/os-specific/linux/xsensors/default.nix index e3639fefffa4e..d229c22ee0c68 100644 --- a/pkgs/os-specific/linux/xsensors/default.nix +++ b/pkgs/os-specific/linux/xsensors/default.nix @@ -16,7 +16,7 @@ stdenv.mkDerivation rec { ./replace-deprecated-gtk.patch ]; meta = with lib; { - license = licenses.gpl2; + license = licenses.gpl2Plus; platforms = platforms.linux; maintainers = with maintainers; [ ]; }; diff --git a/pkgs/os-specific/windows/mingw-w64/default.nix b/pkgs/os-specific/windows/mingw-w64/default.nix index 706186c8e2f15..ba2b243a9408a 100644 --- a/pkgs/os-specific/windows/mingw-w64/default.nix +++ b/pkgs/os-specific/windows/mingw-w64/default.nix @@ -3,18 +3,12 @@ , windows , fetchurl , autoreconfHook +, mingw_w64_headers }: -let - version = "11.0.1"; -in stdenv.mkDerivation { +stdenv.mkDerivation { pname = "mingw-w64"; - inherit version; - - src = fetchurl { - url = "mirror://sourceforge/mingw-w64/mingw-w64-v${version}.tar.bz2"; - hash = "sha256-P2a84Gnui+10OaGhPafLkaXmfqYXDyExesf1eUYl7hA="; - }; + inherit (mingw_w64_headers) version src meta; outputs = [ "out" "dev" ]; @@ -30,8 +24,4 @@ in stdenv.mkDerivation { nativeBuildInputs = [ autoreconfHook ]; buildInputs = [ windows.mingw_w64_headers ]; hardeningDisable = [ "stackprotector" "fortify" ]; - - meta = { - platforms = lib.platforms.windows; - }; } diff --git a/pkgs/os-specific/windows/mingw-w64/headers.nix b/pkgs/os-specific/windows/mingw-w64/headers.nix index 1fd27a8c4573f..d5edaeaa2bd1e 100644 --- a/pkgs/os-specific/windows/mingw-w64/headers.nix +++ b/pkgs/os-specific/windows/mingw-w64/headers.nix @@ -1,11 +1,19 @@ -{ stdenvNoCC, mingw_w64 }: +{ lib, stdenvNoCC, fetchurl }: -stdenvNoCC.mkDerivation { - name = "${mingw_w64.name}-headers"; - inherit (mingw_w64) src meta; +stdenvNoCC.mkDerivation (finalAttrs: { + pname = "mingw_w64-headers"; + version = "11.0.1"; + + src = fetchurl { + url = "mirror://sourceforge/mingw-w64/mingw-w64-v${finalAttrs.version}.tar.bz2"; + hash = "sha256-P2a84Gnui+10OaGhPafLkaXmfqYXDyExesf1eUYl7hA="; + }; preConfigure = '' cd mingw-w64-headers ''; -} + meta = { + platforms = lib.platforms.windows; + }; +}) diff --git a/pkgs/os-specific/windows/mingw-w64/pthreads.nix b/pkgs/os-specific/windows/mingw-w64/pthreads.nix index 3b143efed1d70..3c5fab4fa708f 100644 --- a/pkgs/os-specific/windows/mingw-w64/pthreads.nix +++ b/pkgs/os-specific/windows/mingw-w64/pthreads.nix @@ -1,8 +1,8 @@ -{ stdenv, mingw_w64 }: +{ stdenv, mingw_w64_headers }: stdenv.mkDerivation { - name = "${mingw_w64.name}-pthreads"; - inherit (mingw_w64) src meta; + pname = "mingw_w64-pthreads"; + inherit (mingw_w64_headers) version src meta; configureFlags = [ # Rustc require 'libpthread.a' when targeting 'x86_64-pc-windows-gnu'. diff --git a/pkgs/servers/freeradius/default.nix b/pkgs/servers/freeradius/default.nix index 78912dc115c36..4c0853a6e3e3e 100644 --- a/pkgs/servers/freeradius/default.nix +++ b/pkgs/servers/freeradius/default.nix @@ -76,7 +76,7 @@ stdenv.mkDerivation rec { homepage = "https://freeradius.org/"; description = "Modular, high performance free RADIUS suite"; license = licenses.gpl2Plus; - maintainers = with maintainers; [ sheenobu willibutz lheckemann ]; + maintainers = with maintainers; [ sheenobu willibutz ]; platforms = with platforms; linux; }; } diff --git a/pkgs/servers/home-assistant/component-packages.nix b/pkgs/servers/home-assistant/component-packages.nix index 1fe093dfb2d07..c56be24eaac5e 100644 --- a/pkgs/servers/home-assistant/component-packages.nix +++ b/pkgs/servers/home-assistant/component-packages.nix @@ -2,7 +2,7 @@ # Do not edit! { - version = "2024.6.3"; + version = "2024.6.4"; components = { "3_day_blinds" = ps: with ps; [ ]; @@ -2893,6 +2893,7 @@ hassil home-assistant-intents ifaddr + motionblindsble mutagen psutil-home-assistant pyserial @@ -2900,7 +2901,7 @@ sqlalchemy webrtc-noise-gain zeroconf - ]; # missing inputs: motionblindsble + ]; "motioneye" = ps: with ps; [ motioneye-client ]; @@ -5663,6 +5664,7 @@ "moon" "mopeka" "motion_blinds" + "motionblinds_ble" "motioneye" "motionmount" "mqtt" diff --git a/pkgs/servers/home-assistant/custom-components/awtrix/default.nix b/pkgs/servers/home-assistant/custom-components/awtrix/default.nix new file mode 100644 index 0000000000000..738dbbea5dbca --- /dev/null +++ b/pkgs/servers/home-assistant/custom-components/awtrix/default.nix @@ -0,0 +1,30 @@ +{ lib +, fetchFromGitHub +, buildHomeAssistantComponent +, requests +}: + +buildHomeAssistantComponent rec { + owner = "10der"; + domain = "awtrix"; + version = "unstable-2024-05-26"; + + src = fetchFromGitHub { + inherit owner; + repo = "homeassistant-custom_components-awtrix"; + rev = "329d8eec28478574b9f34778f96b5768f30be2ab"; + hash = "sha256-ucSaQWMS6ZwXHnw5Ct/STxpl1JjBRua3edrLvBAsdyw="; + }; + + propagatedBuildInputs = [ + requests + ]; + + meta = with lib; { + description = "Home-assistant integration for awtrix"; + homepage = "https://github.com/10der/homeassistant-custom_components-awtrix"; + maintainers = with maintainers; [ pinpox ]; + license = licenses.mit; + }; +} + diff --git a/pkgs/servers/home-assistant/custom-components/default.nix b/pkgs/servers/home-assistant/custom-components/default.nix index 8f5766aac0be4..d0323d2549890 100644 --- a/pkgs/servers/home-assistant/custom-components/default.nix +++ b/pkgs/servers/home-assistant/custom-components/default.nix @@ -6,6 +6,8 @@ auth-header = callPackage ./auth-header {}; + awtrix = callPackage ./awtrix {}; + better_thermostat = callPackage ./better_thermostat {}; emporia_vue = callPackage ./emporia_vue {}; diff --git a/pkgs/servers/home-assistant/custom-lovelace-modules/android-tv-card/default.nix b/pkgs/servers/home-assistant/custom-lovelace-modules/android-tv-card/default.nix index b3f93c0b50c4c..9398e57486f99 100644 --- a/pkgs/servers/home-assistant/custom-lovelace-modules/android-tv-card/default.nix +++ b/pkgs/servers/home-assistant/custom-lovelace-modules/android-tv-card/default.nix @@ -5,18 +5,18 @@ buildNpmPackage rec { pname = "android-tv-card"; - version = "3.8.0"; + version = "3.8.1"; src = fetchFromGitHub { owner = "Nerwyn"; repo = "android-tv-card"; rev = version; - hash = "sha256-DYNfDGvCLJHhp2p9iPsxWAyPPUNI+sLwDYP6FRQA1vk="; + hash = "sha256-ARFJJ119zJzjW0d59JFARMcjVAJ2IFDkShIN43d1adI="; }; patches = [ ./dont-call-git.patch ]; - npmDepsHash = "sha256-9O5T3x3uLm5qpZwIbeo2DJ/CirRilJ17BZuT3+NDP8A="; + npmDepsHash = "sha256-t/kZTcXs3IpbrEfnmYQlJqhM8F3mO4prbQNnKtFqsDM="; installPhase = '' runHook preInstall diff --git a/pkgs/servers/home-assistant/default.nix b/pkgs/servers/home-assistant/default.nix index 2e60e21ae8f2a..02f83ba82b62f 100644 --- a/pkgs/servers/home-assistant/default.nix +++ b/pkgs/servers/home-assistant/default.nix @@ -533,7 +533,7 @@ let extraBuildInputs = extraPackages python.pkgs; # Don't forget to run update-component-packages.py after updating - hassVersion = "2024.6.3"; + hassVersion = "2024.6.4"; in python.pkgs.buildPythonApplication rec { pname = "homeassistant"; @@ -551,13 +551,13 @@ in python.pkgs.buildPythonApplication rec { owner = "home-assistant"; repo = "core"; rev = "refs/tags/${version}"; - hash = "sha256-hpKfdcTc9vddA/1EsfugDIKUPe0g3fPQnmwHLSEIF9w="; + hash = "sha256-WIAFTVNHzrKTRONmOc/lq5PvC34PDKF7UfIokLCVzNY="; }; # Secondary source is pypi sdist for translations sdist = fetchPypi { inherit pname version; - hash = "sha256-lhTVAYwtYf7UzplAIHTWqgd0P7V93gjNbBUlMd3i3oQ="; + hash = "sha256-Ymv3AlArAD2rSXQwMhEVeynwhAo8ZMrtV1zUK4U8xqQ="; }; build-system = with python.pkgs; [ diff --git a/pkgs/servers/home-assistant/intents.nix b/pkgs/servers/home-assistant/intents.nix index 06b68cfd383ee..88944efe35930 100644 --- a/pkgs/servers/home-assistant/intents.nix +++ b/pkgs/servers/home-assistant/intents.nix @@ -21,7 +21,7 @@ buildPythonPackage rec { pname = "home-assistant-intents"; - version = "2024.6.5"; + version = "2024.6.21"; pyproject = true; disabled = pythonOlder "3.9"; @@ -30,7 +30,7 @@ buildPythonPackage rec { owner = "home-assistant"; repo = "intents-package"; rev = "refs/tags/${version}"; - hash = "sha256-2rACxdgvCWnyhfVRAVbLTaEAYquAkLnfxi7zeZYZslI="; + hash = "sha256-tgbZqcxv/uFoNCGq7TySffhqQXzupZodQfQHBqkSHrE="; fetchSubmodules = true; }; diff --git a/pkgs/servers/jellyseerr/default.nix b/pkgs/servers/jellyseerr/default.nix index ca8e93753e69f..b469e46cf10d8 100644 --- a/pkgs/servers/jellyseerr/default.nix +++ b/pkgs/servers/jellyseerr/default.nix @@ -1,36 +1,32 @@ -{ lib -, fetchFromGitHub -, makeWrapper -, mkYarnPackage -, nodejs -, fetchYarnDeps -, python3 +{ + lib, + mkYarnPackage, + fetchFromGitHub, + fetchYarnDeps, + makeWrapper, + nodejs, + python3, + sqlite, }: -let - pin = lib.importJSON ./pin.json; -in - mkYarnPackage rec { pname = "jellyseerr"; - inherit (pin) version; + version = "1.8.1"; src = fetchFromGitHub { owner = "Fallenbagel"; repo = "jellyseerr"; rev = "v${version}"; - hash = pin.srcHash; + hash = "sha256-B8Hnpi4XwK0WrHRgj7OSVUh49oRH9SVEHdzGbnDa8p8="; }; packageJSON = ./package.json; offlineCache = fetchYarnDeps { yarnLock = "${src}/yarn.lock"; - sha256 = pin.yarnSha256; + hash = "sha256-ME19kHlVw0Q5oCytYQCUj4Ek0+712NkqB6eozOtF6/k="; }; - doDist = false; - nativeBuildInputs = [ nodejs makeWrapper @@ -38,16 +34,23 @@ mkYarnPackage rec { # Fixes "SQLite package has not been found installed" at launch pkgConfig.sqlite3 = { - nativeBuildInputs = [ nodejs.pkgs.node-pre-gyp python3 ]; + nativeBuildInputs = [ + nodejs.pkgs.node-pre-gyp + python3 + sqlite + ]; postInstall = '' export CPPFLAGS="-I${nodejs}/include/node" - node-pre-gyp install --prefer-offline --build-from-source --nodedir=${nodejs}/include/node + node-pre-gyp install --prefer-offline --build-from-source --nodedir=${nodejs}/include/node --sqlite=${sqlite.dev} rm -r build-tmp-napi-v6 ''; }; pkgConfig.bcrypt = { - nativeBuildInputs = [ nodejs.pkgs.node-pre-gyp python3 ]; + nativeBuildInputs = [ + nodejs.pkgs.node-pre-gyp + python3 + ]; postInstall = '' export CPPFLAGS="-I${nodejs}/include/node" node-pre-gyp install --prefer-offline --build-from-source --nodedir=${nodejs}/include/node @@ -72,6 +75,8 @@ mkYarnPackage rec { --set NODE_ENV production ''; + doDist = false; + passthru.updateScript = ./update.sh; meta = with lib; { diff --git a/pkgs/servers/jellyseerr/pin.json b/pkgs/servers/jellyseerr/pin.json deleted file mode 100644 index 715f91a73b31c..0000000000000 --- a/pkgs/servers/jellyseerr/pin.json +++ /dev/null @@ -1,5 +0,0 @@ -{ - "version": "1.8.1", - "srcHash": "sha256-B8Hnpi4XwK0WrHRgj7OSVUh49oRH9SVEHdzGbnDa8p8=", - "yarnSha256": "ME19kHlVw0Q5oCytYQCUj4Ek0+712NkqB6eozOtF6/k=" -} diff --git a/pkgs/servers/jellyseerr/update.sh b/pkgs/servers/jellyseerr/update.sh index 719fc622a6e4c..cd8f6c03081c7 100755 --- a/pkgs/servers/jellyseerr/update.sh +++ b/pkgs/servers/jellyseerr/update.sh @@ -1,39 +1,16 @@ #!/usr/bin/env nix-shell -#!nix-shell -i bash -p nix curl jq prefetch-yarn-deps nix-prefetch-github +#!nix-shell -i bash -p curl jq common-updater-scripts nix prefetch-yarn-deps -set -euo pipefail +set -eu -o pipefail -if [[ "$#" -gt 1 || "$1" == -* ]]; then - echo "Regenerates packaging data for jellyseerr." - echo "Usage: $0 [git release tag]" - exit 1 -fi +version=${1:-$(curl -s https://api.github.com/repos/Fallenbagel/jellyseerr/releases/latest | jq --raw-output '.tag_name[1:]')} +update-source-version jellyseerr $version -tag="$1" +nix_file=$(nix-instantiate --eval --strict -A "jellyseerr.meta.position" | sed -re 's/^"(.*):[0-9]+"$/\1/') +nix_dir=$(dirname $nix_file) +cp $(nix-instantiate --eval --expr 'with import ./default.nix { }; "${jellyseerr.src}/package.json"' | sed 's/"//g') $nix_dir -if [ -z "$tag" ]; then - tag="$( - curl "https://api.github.com/repos/Fallenbagel/jellyseerr/releases?per_page=1" | - jq -r '.[0].tag_name' - )" -fi - -src="https://raw.githubusercontent.com/Fallenbagel/jellyseerr/$tag" -src_hash=$(nix-prefetch-github Fallenbagel jellyseerr --rev ${tag} | jq -r .sha256) - -tmpdir=$(mktemp -d) -trap 'rm -rf "$tmpdir"' EXIT - -pushd $tmpdir -curl -O "$src/yarn.lock" -yarn_sha256=$(prefetch-yarn-deps yarn.lock) -popd - -curl -O "$src/package.json" -cat > pin.json << EOF -{ - "version": "$(echo $tag | grep -P '(\d|\.)+' -o)", - "srcHash": "sha256-$src_hash", - "yarnSha256": "$yarn_sha256" -} -EOF +old_yarn_hash=$(nix-instantiate --eval --strict -A "jellyseerr.offlineCache.outputHash" | tr -d '"' | sed -re 's|[+]|\\&|g') +lock_file=$(nix-instantiate --eval --expr 'with import ./default.nix { }; "${jellyseerr.src}/yarn.lock"' | sed 's/"//g') +new_yarn_hash=$(nix hash to-sri --type sha256 $(prefetch-yarn-deps $lock_file)) +sed -i "$nix_file" -re "s|\"$old_yarn_hash\"|\"$new_yarn_hash\"|" diff --git a/pkgs/servers/jitsi-excalidraw/default.nix b/pkgs/servers/jitsi-excalidraw/default.nix index 4fa9a55e20821..01e66309e556a 100644 --- a/pkgs/servers/jitsi-excalidraw/default.nix +++ b/pkgs/servers/jitsi-excalidraw/default.nix @@ -1,8 +1,10 @@ -{ lib -, buildNpmPackage -, fetchFromGitHub -, nodejs -, python3 +{ + lib, + buildNpmPackage, + fetchFromGitHub, + nodejs, + python3, + nix-update-script, }: buildNpmPackage rec { @@ -31,6 +33,8 @@ buildNpmPackage rec { --chdir $out/share ''; + passthru.updateScript = nix-update-script { }; + meta = with lib; { description = "Excalidraw collaboration backend for Jitsi"; homepage = "https://github.com/jitsi/excalidraw-backend"; diff --git a/pkgs/servers/keycloak/default.nix b/pkgs/servers/keycloak/default.nix index 743607a3f4718..48d9ecec2b01b 100644 --- a/pkgs/servers/keycloak/default.nix +++ b/pkgs/servers/keycloak/default.nix @@ -18,11 +18,11 @@ let ''; in stdenv.mkDerivation rec { pname = "keycloak"; - version = "24.0.5"; + version = "25.0.1"; src = fetchzip { url = "https://github.com/keycloak/keycloak/releases/download/${version}/keycloak-${version}.zip"; - hash = "sha256-lf1miVEGQvPbmlOZMCXUyX/pKE+JoJFawhjVEPJDJ6s="; + hash = "sha256-gwnBCH65s8KGca2FNBxfBfNKox9OFTN3oEAPcYhSx9o="; }; nativeBuildInputs = [ makeWrapper jre ]; diff --git a/pkgs/servers/mail/mailman/python.nix b/pkgs/servers/mail/mailman/python.nix index 29d2f6c6d36a5..933b8357a33db 100644 --- a/pkgs/servers/mail/mailman/python.nix +++ b/pkgs/servers/mail/mailman/python.nix @@ -28,6 +28,10 @@ python3.override { hash = "sha256-WF3FFrnrBCphnvCjnD19Vf6BvbTfCaUsnN3g0Hvxqn0="; }; }); + + readme-renderer = super.readme-renderer.overridePythonAttrs (_: { + propagatedBuildInputs = [ self.cmarkgfm ]; + }); }) overlay; diff --git a/pkgs/servers/minio/default.nix b/pkgs/servers/minio/default.nix index 88901e88a7a72..93be1992f3a23 100644 --- a/pkgs/servers/minio/default.nix +++ b/pkgs/servers/minio/default.nix @@ -21,16 +21,16 @@ let in buildGoModule rec { pname = "minio"; - version = "2024-06-06T09-36-42Z"; + version = "2024-06-13T22-53-53Z"; src = fetchFromGitHub { owner = "minio"; repo = "minio"; rev = "RELEASE.${version}"; - hash = "sha256-oj8hFtHnU1b/9t9qxxO8UblRqfv6lxZNwqxTB2TBZN0="; + hash = "sha256-SqrL1fYVy7OylepQGmTm6p77q3vssNdWyJ5+9wZHehQ="; }; - vendorHash = "sha256-S+Afa7gC1vyH3KuzTce+bk7bt8wMJBjvEui58MM1QJk="; + vendorHash = "sha256-AK6PGX/ezkN/LAnOLd8fRGkzwhTE4BY63H9ebnXxEOA="; doCheck = false; diff --git a/pkgs/servers/monitoring/consul-alerts/default.nix b/pkgs/servers/monitoring/consul-alerts/default.nix index 3fbbf7f4cbd31..f50d30d3aa04d 100644 --- a/pkgs/servers/monitoring/consul-alerts/default.nix +++ b/pkgs/servers/monitoring/consul-alerts/default.nix @@ -1,21 +1,24 @@ -{ lib, buildGoPackage, fetchFromGitHub }: +{ lib, buildGoModule, fetchFromGitHub }: -buildGoPackage rec { +buildGoModule rec { pname = "consul-alerts"; version = "0.6.0"; - rev = "v${version}"; - - goPackagePath = "github.com/AcalephStorage/consul-alerts"; - - goDeps = ./deps.nix; src = fetchFromGitHub { - inherit rev; + rev = "v${version}"; owner = "AcalephStorage"; repo = "consul-alerts"; sha256 = "0836zicv76sd6ljhbbii1mrzh65pch10w3gfa128iynaviksbgn5"; }; + postPatch = '' + go mod init github.com/AcalephStorage/consul-alerts + ''; + + vendorHash = null; + + doCheck = false; + meta = with lib; { mainProgram = "consul-alerts"; description = "Extendable open source continuous integration server"; diff --git a/pkgs/servers/monitoring/grafana-image-renderer/default.nix b/pkgs/servers/monitoring/grafana-image-renderer/default.nix index dec05b859bb02..4d598a1395cf9 100644 --- a/pkgs/servers/monitoring/grafana-image-renderer/default.nix +++ b/pkgs/servers/monitoring/grafana-image-renderer/default.nix @@ -7,18 +7,18 @@ mkYarnPackage rec { pname = "grafana-image-renderer"; - version = "3.10.5"; + version = "3.11.0"; src = fetchFromGitHub { owner = "grafana"; repo = "grafana-image-renderer"; rev = "v${version}"; - hash = "sha256-Ah78mapwGTD5mTPN7oKk8iwXpp2RMQ8nm0QX3/jTjKU="; + hash = "sha256-FoRXXeKiruXM8/Yh63zn2NuAj/JBXRNgNLLAuJ+sVIw="; }; offlineCache = fetchYarnDeps { yarnLock = src + "/yarn.lock"; - hash = "sha256-o8Bxc5KyoYMYJ6FwQ6PSi7A0LhU4VNuXh5xXbEXLb4Y="; + hash = "sha256-utJS1UsJ2SJ72w2zFpbP33Jz+eTG5aoKfvRP9muB9gg="; }; packageJSON = ./package.json; diff --git a/pkgs/servers/monitoring/grafana-image-renderer/package.json b/pkgs/servers/monitoring/grafana-image-renderer/package.json index e7435c2ebdaba..6ef90d97713c2 100644 --- a/pkgs/servers/monitoring/grafana-image-renderer/package.json +++ b/pkgs/servers/monitoring/grafana-image-renderer/package.json @@ -25,7 +25,7 @@ "test-diff": "cross-env SAVE_DIFF=true jest" }, "dependencies": { - "@grpc/grpc-js": "^1.7.0", + "@grpc/grpc-js": "^1.8.22", "@grpc/proto-loader": "^0.7.2", "@hapi/boom": "^10.0.0", "@puppeteer/browsers": "^1.6.0", diff --git a/pkgs/servers/monitoring/mtail/default.nix b/pkgs/servers/monitoring/mtail/default.nix index 9e406689c1125..dd4ffa53e65b4 100644 --- a/pkgs/servers/monitoring/mtail/default.nix +++ b/pkgs/servers/monitoring/mtail/default.nix @@ -6,13 +6,13 @@ buildGoModule rec { pname = "mtail"; - version = "3.0.2"; + version = "3.0.3"; src = fetchFromGitHub { owner = "google"; repo = "mtail"; rev = "v${version}"; - hash = "sha256-zIegPQEzG7qrvS40lDODw0oisZtMN5LnLdZA01K0FQs="; + hash = "sha256-AFSEMc7ZFT3fMupCPIA2nQZXIuJvsMXwsS4/zrJV+wM="; }; vendorHash = "sha256-qn27BYQdYNfR+9w2SBfBzevtOLTm4Q6nwduL13TgmoY="; diff --git a/pkgs/servers/peertube/default.nix b/pkgs/servers/peertube/default.nix index 3c46db2f34b34..9bd96afbbfc79 100644 --- a/pkgs/servers/peertube/default.nix +++ b/pkgs/servers/peertube/default.nix @@ -189,6 +189,6 @@ stdenv.mkDerivation rec { license = licenses.agpl3Plus; homepage = "https://joinpeertube.org/"; platforms = [ "x86_64-linux" "aarch64-linux" "x86_64-darwin" "aarch64-darwin" ]; - maintainers = with maintainers; [ immae izorkin mohe2015 stevenroose ]; + maintainers = with maintainers; [ immae izorkin stevenroose ]; }; } diff --git a/pkgs/servers/search/meilisearch/Cargo.lock b/pkgs/servers/search/meilisearch/Cargo.lock index b7419052a84bf..321e3053e5363 100644 --- a/pkgs/servers/search/meilisearch/Cargo.lock +++ b/pkgs/servers/search/meilisearch/Cargo.lock @@ -494,7 +494,7 @@ checksum = "8c3c1a368f70d6cf7302d78f8f7093da241fb8e8807c05cc9e51a125895a6d5b" [[package]] name = "benchmarks" -version = "1.8.2" +version = "1.8.3" dependencies = [ "anyhow", "bytes", @@ -639,7 +639,7 @@ dependencies = [ [[package]] name = "build-info" -version = "1.8.2" +version = "1.8.3" dependencies = [ "anyhow", "time", @@ -1539,7 +1539,7 @@ dependencies = [ [[package]] name = "dump" -version = "1.8.2" +version = "1.8.3" dependencies = [ "anyhow", "big_s", @@ -1787,7 +1787,7 @@ dependencies = [ [[package]] name = "file-store" -version = "1.8.2" +version = "1.8.3" dependencies = [ "faux", "tempfile", @@ -1810,7 +1810,7 @@ dependencies = [ [[package]] name = "filter-parser" -version = "1.8.2" +version = "1.8.3" dependencies = [ "insta", "nom", @@ -1830,7 +1830,7 @@ dependencies = [ [[package]] name = "flatten-serde-json" -version = "1.8.2" +version = "1.8.3" dependencies = [ "criterion", "serde_json", @@ -1948,7 +1948,7 @@ dependencies = [ [[package]] name = "fuzzers" -version = "1.8.2" +version = "1.8.3" dependencies = [ "arbitrary", "clap", @@ -2442,7 +2442,7 @@ checksum = "206ca75c9c03ba3d4ace2460e57b189f39f43de612c2f85836e65c929701bb2d" [[package]] name = "index-scheduler" -version = "1.8.2" +version = "1.8.3" dependencies = [ "anyhow", "big_s", @@ -2638,7 +2638,7 @@ dependencies = [ [[package]] name = "json-depth-checker" -version = "1.8.2" +version = "1.8.3" dependencies = [ "criterion", "serde_json", @@ -3275,7 +3275,7 @@ checksum = "490cc448043f947bae3cbee9c203358d62dbee0db12107a74be5c30ccfd09771" [[package]] name = "meili-snap" -version = "1.8.2" +version = "1.8.3" dependencies = [ "insta", "md5", @@ -3284,7 +3284,7 @@ dependencies = [ [[package]] name = "meilisearch" -version = "1.8.2" +version = "1.8.3" dependencies = [ "actix-cors", "actix-http", @@ -3377,7 +3377,7 @@ dependencies = [ [[package]] name = "meilisearch-auth" -version = "1.8.2" +version = "1.8.3" dependencies = [ "base64 0.21.7", "enum-iterator", @@ -3396,7 +3396,7 @@ dependencies = [ [[package]] name = "meilisearch-types" -version = "1.8.2" +version = "1.8.3" dependencies = [ "actix-web", "anyhow", @@ -3426,7 +3426,7 @@ dependencies = [ [[package]] name = "meilitool" -version = "1.8.2" +version = "1.8.3" dependencies = [ "anyhow", "clap", @@ -3465,7 +3465,7 @@ dependencies = [ [[package]] name = "milli" -version = "1.8.2" +version = "1.8.3" dependencies = [ "arroy", "big_s", @@ -3906,7 +3906,7 @@ checksum = "e3148f5046208a5d56bcfc03053e3ca6334e51da8dfb19b6cdc8b306fae3283e" [[package]] name = "permissive-json-pointer" -version = "1.8.2" +version = "1.8.3" dependencies = [ "big_s", "serde_json", @@ -6074,7 +6074,7 @@ dependencies = [ [[package]] name = "xtask" -version = "1.8.2" +version = "1.8.3" dependencies = [ "anyhow", "build-info", diff --git a/pkgs/servers/search/meilisearch/default.nix b/pkgs/servers/search/meilisearch/default.nix index 55810cf589975..4a67233194168 100644 --- a/pkgs/servers/search/meilisearch/default.nix +++ b/pkgs/servers/search/meilisearch/default.nix @@ -10,7 +10,7 @@ }: let - version = "1.8.2"; + version = "1.8.3"; in rustPlatform.buildRustPackage { pname = "meilisearch"; @@ -20,7 +20,7 @@ rustPlatform.buildRustPackage { owner = "meilisearch"; repo = "MeiliSearch"; rev = "refs/tags/v${version}"; - hash = "sha256-x5hHgEhM3iljB7KoJcRoEEZm5bc/lZevT9x/bf2mEMI="; + hash = "sha256-R074dn9kWxHf5loq/K4aLWvrJwpt7YAigNU0YHc0mRg="; }; cargoBuildFlags = [ "--package=meilisearch" ]; diff --git a/pkgs/servers/sftpgo/default.nix b/pkgs/servers/sftpgo/default.nix index e51bbf5eb528c..c57ef45b3a267 100644 --- a/pkgs/servers/sftpgo/default.nix +++ b/pkgs/servers/sftpgo/default.nix @@ -7,16 +7,16 @@ buildGoModule rec { pname = "sftpgo"; - version = "2.6.0"; + version = "2.6.1"; src = fetchFromGitHub { owner = "drakkan"; repo = "sftpgo"; rev = "refs/tags/v${version}"; - hash = "sha256-HsSBW30qSU3SRyexk2tRjY1FQcBsa70fK3UuT+Gdtm0="; + hash = "sha256-LMZAEr0PVTpn4YY22Lz0IuJfRzvADybNExBrgb1qqQ8="; }; - vendorHash = "sha256-BMwEDsXzk8ExygKreWmtkNvhlg3+YU9KcY1pp+9XffI="; + vendorHash = "sha256-fhS6uq0uEtSBeWFjh4/HqXDcAsYyvp9jtxcDr+s+uAo="; ldflags = [ "-s" diff --git a/pkgs/servers/sickbeard/sickgear.nix b/pkgs/servers/sickbeard/sickgear.nix index f982b97057223..4c534cc2bfe46 100644 --- a/pkgs/servers/sickbeard/sickgear.nix +++ b/pkgs/servers/sickbeard/sickgear.nix @@ -4,13 +4,13 @@ let pythonEnv = python3.withPackages(ps: with ps; [ cheetah3 lxml ]); in stdenv.mkDerivation rec { pname = "sickgear"; - version = "3.31.0"; + version = "3.31.1"; src = fetchFromGitHub { owner = "SickGear"; repo = "SickGear"; rev = "release_${version}"; - hash = "sha256-aJqEmSjmfJiFE0vz9fyDvjyvpbQiul+N8LD+j3f70/0="; + hash = "sha256-qcivNJ3CrvToT8CBq5Z/xssP/srTerXJfRGXcvNh2Ag="; }; patches = [ diff --git a/pkgs/servers/spicedb/default.nix b/pkgs/servers/spicedb/default.nix index 412f8d4de2e91..a7afa073b122d 100644 --- a/pkgs/servers/spicedb/default.nix +++ b/pkgs/servers/spicedb/default.nix @@ -6,13 +6,13 @@ buildGoModule rec { pname = "spicedb"; - version = "1.33.0"; + version = "1.33.1"; src = fetchFromGitHub { owner = "authzed"; repo = "spicedb"; rev = "v${version}"; - hash = "sha256-DjicS/rrSMcdUkRPOJ5jon2uYVKF+3DkHBvM93v/CmQ="; + hash = "sha256-qEEttgo7OqCEuC+mj2e5HW1IpIl5czxScBmaLiJJuUY="; }; vendorHash = "sha256-pqHDSQQMvfas9yeyhs5cWokBPISQygz2aHf6W5Zc+co="; diff --git a/pkgs/servers/sql/mariadb/default.nix b/pkgs/servers/sql/mariadb/default.nix index 70ac95a3ae179..cab00249d3b6b 100644 --- a/pkgs/servers/sql/mariadb/default.nix +++ b/pkgs/servers/sql/mariadb/default.nix @@ -58,10 +58,6 @@ let patches = [ ./patch/cmake-includedir.patch - - # Fix build with libxml 2.12 and Clang 16. - # https://github.com/MariaDB/server/pull/2983 - ./patch/0001-Fix-build-with-libxml2-2.12.patch ] # Fixes a build issue as documented on # https://jira.mariadb.org/browse/MDEV-26769?focusedCommentId=206073&page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel#comment-206073 @@ -248,29 +244,31 @@ in # see https://mariadb.org/about/#maintenance-policy for EOLs mariadb_105 = self.callPackage generic { # Supported until 2025-06-24 - version = "10.5.23"; - hash = "sha256-P3wzsgjLeZ2wFKh09WcY6t/yLulXgfo2Cqa8aWEJrP4="; + # TODO should be removed + version = "10.5.25"; + hash = "sha256-lhnQ9R6GQ1dGayxjMBo0pT99/ZnxjE/UUvqyK/Obpk4="; inherit (self.darwin) cctools; inherit (self.darwin.apple_sdk.frameworks) CoreServices; }; mariadb_106 = self.callPackage generic { # Supported until 2026-07-06 - version = "10.6.16"; - hash = "sha256-Xvg4Q+eW3Nqa6keyRpDd9thI9D9D4R+dmgzCHHj7uc8="; + version = "10.6.18"; + hash = "sha256-aJihER9HEwcJ4ouix70aV+S7VxAfbhCeWX1R5tOFzxg="; inherit (self.darwin) cctools; inherit (self.darwin.apple_sdk.frameworks) CoreServices; }; mariadb_1011 = self.callPackage generic { # Supported until 2028-02-16 - version = "10.11.6"; - hash = "sha256-HAFjRj6Y1x9HgHQWEaQJge7ivETTkmAcpJu/lI0E3Wc="; + version = "10.11.8"; + hash = "sha256-XwTz4z2fHL7/BeecVNQdMCYwUAyZWu5ysGOOL5383w8="; inherit (self.darwin) cctools; inherit (self.darwin.apple_sdk.frameworks) CoreServices; }; mariadb_110 = self.callPackage generic { # Supported until 2024-06-07 - version = "11.0.4"; - hash = "sha256-J2ls3zEVnyJUEOtchmW4VkWhxZmBzlr2vP9sll/u3ms="; + # TODO should be removed + version = "11.0.6"; + hash = "sha256-AYnWKUbDfG20a/GkaLqVgLy6joDwWVjsSDwzh+zPmgA="; inherit (self.darwin) cctools; inherit (self.darwin.apple_sdk.frameworks) CoreServices; }; diff --git a/pkgs/servers/sql/mssql/jdbc/default.nix b/pkgs/servers/sql/mssql/jdbc/default.nix index 2cafd510c51dd..f408ec0221609 100644 --- a/pkgs/servers/sql/mssql/jdbc/default.nix +++ b/pkgs/servers/sql/mssql/jdbc/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "mssql-jdbc"; - version = "12.6.2"; + version = "12.6.3"; src = fetchurl { url = "https://github.com/Microsoft/mssql-jdbc/releases/download/v${version}/mssql-jdbc-${version}.jre8.jar"; - sha256 = "sha256-PR6oWlbCLPtVUMspw+DrQ8VhjXu4Mgqlpx9kSKds7S0="; + sha256 = "sha256-Q5XwJ3j6J06DjX2tIVM676tXvKSrBb0W6/EucHpyTI4="; }; dontUnpack = true; diff --git a/pkgs/servers/sql/postgresql/ext/default.nix b/pkgs/servers/sql/postgresql/ext/default.nix index 6166bda6b41d7..383eee05b3ef8 100644 --- a/pkgs/servers/sql/postgresql/ext/default.nix +++ b/pkgs/servers/sql/postgresql/ext/default.nix @@ -74,6 +74,8 @@ self: super: { smlar = super.callPackage ./smlar.nix { }; + system_stats = super.callPackage ./system_stats.nix { }; + temporal_tables = super.callPackage ./temporal_tables.nix { }; timescaledb = super.callPackage ./timescaledb.nix { }; diff --git a/pkgs/servers/sql/postgresql/ext/system_stats.nix b/pkgs/servers/sql/postgresql/ext/system_stats.nix new file mode 100644 index 0000000000000..bc2a0973b95f3 --- /dev/null +++ b/pkgs/servers/sql/postgresql/ext/system_stats.nix @@ -0,0 +1,40 @@ +{ + fetchFromGitHub, + lib, + stdenv, + postgresql, +}: +stdenv.mkDerivation rec { + pname = "system_stats"; + version = "3.0"; + + buildInputs = [ postgresql ]; + + src = fetchFromGitHub { + owner = "EnterpriseDB"; + repo = "system_stats"; + rev = "v${version}"; + hash = "sha256-LuX7/LOi0rl6L/kjbjq7rr2zPcGIOYB7hdZBNJ9xqak="; + }; + + installPhase = '' + runHook preInstall + + mkdir -p $out/{lib,share/postgresql/extension} + + cp *${postgresql.dlSuffix} $out/lib + cp *.sql $out/share/postgresql/extension + cp *.control $out/share/postgresql/extension + + runHook postInstall + ''; + + meta = with lib; { + description = "A Postgres extension for exposing system metrics such as CPU, memory and disk information"; + homepage = "https://github.com/EnterpriseDB/system_stats"; + changelog = "https://github.com/EnterpriseDB/system_stats/raw/v${version}/CHANGELOG.md"; + maintainers = with maintainers; [ shivaraj-bh ]; + platforms = postgresql.meta.platforms; + license = licenses.postgresql; + }; +} diff --git a/pkgs/servers/sqlpage/default.nix b/pkgs/servers/sqlpage/default.nix index 294b90e31bbb4..0c633bb408e67 100644 --- a/pkgs/servers/sqlpage/default.nix +++ b/pkgs/servers/sqlpage/default.nix @@ -42,13 +42,13 @@ in rustPlatform.buildRustPackage rec { pname = "sqlpage"; - version = "0.22.0"; + version = "0.23.0"; src = fetchFromGitHub { owner = "lovasoa"; repo = "SQLpage"; rev = "v${version}"; - hash = "sha256-FSMf1B/2ZyOikkwmt3YLtKYs7NCf3N91SKQK73kWieQ="; + hash = "sha256-tb3MwH6d/xe05QiBu11iZYICp8eTkKLuQiISoY0zKTE="; }; postPatch = '' @@ -75,7 +75,7 @@ rustPlatform.buildRustPackage rec { "$(cat ${tomselect})" ''; - cargoHash = "sha256-uDeQ6/hKJFD747sUeQbpQIIzbpcvQfsTbbx68m1GAKY="; + cargoHash = "sha256-/k9nNxZxyV12pyRep6cTsUoEQobb9sWKnXxQmXmVAl0="; nativeBuildInputs = [ pkg-config diff --git a/pkgs/servers/traefik/default.nix b/pkgs/servers/traefik/default.nix index 98f443a286592..375347b22fc12 100644 --- a/pkgs/servers/traefik/default.nix +++ b/pkgs/servers/traefik/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "traefik"; - version = "3.0.2"; + version = "3.0.3"; # Archive with static assets for webui src = fetchzip { url = "https://github.com/traefik/traefik/releases/download/v${version}/traefik-v${version}.src.tar.gz"; - hash = "sha256-h/LN++Jw8Yr08uH5T2Br1YVJtiAToI/1k4YDxqmFCZQ="; + hash = "sha256-vjY8sbNkY/kdQiJ020iUWxIVzxkmpkeLhxBThc6tUuE="; stripRoot = false; }; - vendorHash = "sha256-XVRVrfraI7lQOrQKv0L557903hwZXlzI+9/tpXnAlW0="; + vendorHash = "sha256-rvo3nw9yUfikO82cy6BbukwqwBSrUCCEta3nKBprCbk="; subPackages = [ "cmd/traefik" ]; diff --git a/pkgs/servers/web-apps/matomo/default.nix b/pkgs/servers/web-apps/matomo/default.nix index 627c64e67b3ef..529deabd48bcd 100644 --- a/pkgs/servers/web-apps/matomo/default.nix +++ b/pkgs/servers/web-apps/matomo/default.nix @@ -118,7 +118,7 @@ let license = licenses.gpl3Plus; homepage = "https://matomo.org/"; platforms = platforms.all; - maintainers = with maintainers; [ florianjacob kiwi sebbel twey boozedog ] ++ teams.flyingcircus.members; + maintainers = with maintainers; [ florianjacob sebbel twey boozedog ] ++ teams.flyingcircus.members; }; }; in diff --git a/pkgs/shells/powershell/default.nix b/pkgs/shells/powershell/default.nix index 4c8d60b679eab..715f33bbbf816 100644 --- a/pkgs/shells/powershell/default.nix +++ b/pkgs/shells/powershell/default.nix @@ -29,7 +29,7 @@ let in stdenv.mkDerivation rec { pname = "powershell"; - version = "7.4.2"; + version = "7.4.3"; src = passthru.sources.${stdenv.hostPlatform.system} or (throw "Unsupported system: ${stdenv.hostPlatform.system}"); @@ -84,19 +84,19 @@ stdenv.mkDerivation rec { sources = { aarch64-darwin = fetchurl { url = "https://github.com/PowerShell/PowerShell/releases/download/v${version}/powershell-${version}-osx-arm64.tar.gz"; - hash = "sha256-Gg1wXIw/x/s0dgCkycZ4fC4eK+zIoduHr8nHvBOPFm4="; + hash = "sha256-n1A17psyDWY/BtwvmQn3SjYqhX/C5xZJnq83aA3mUJk="; }; aarch64-linux = fetchurl { url = "https://github.com/PowerShell/PowerShell/releases/download/v${version}/powershell-${version}-linux-arm64.tar.gz"; - hash = "sha256-AGAhaUqeDOliRX0jGJ48uIrgMIY7IhkH+PuJHflJeus="; + hash = "sha256-TuSjvi2aJz2jtwm4CRP99M4dhxzerTCdyOOI6FC8CN0="; }; x86_64-darwin = fetchurl { url = "https://github.com/PowerShell/PowerShell/releases/download/v${version}/powershell-${version}-osx-x64.tar.gz"; - hash = "sha256-jH4XY/XjYljkVV4DlOq+f8lwWDcFGA7yaVFKgGUVz+I="; + hash = "sha256-bMOVJ8TT8Rh79rD+vSJP/gxjNHXQE39qASvLAc9P4D8="; }; x86_64-linux = fetchurl { url = "https://github.com/PowerShell/PowerShell/releases/download/v${version}/powershell-${version}-linux-x64.tar.gz"; - hash = "sha256-NmBdw3l53lry4QeDv3DArYFQUh6B5tfJMiA267iX5/4="; + hash = "sha256-XPzCKK/T/85TbsRUGrr+l8Ypr81tyFyaIHEolLv2Wts="; }; }; tests.version = testers.testVersion { diff --git a/pkgs/shells/zsh/zsh-completions/default.nix b/pkgs/shells/zsh/zsh-completions/default.nix index 1873c38fb9a16..a32d56bedd1f3 100644 --- a/pkgs/shells/zsh/zsh-completions/default.nix +++ b/pkgs/shells/zsh/zsh-completions/default.nix @@ -22,8 +22,13 @@ stdenv.mkDerivation rec { meta = { description = "Additional completion definitions for zsh"; homepage = "https://github.com/zsh-users/zsh-completions"; - license = lib.licenses.free; - + license = with lib.licenses; [ + asl20 + bsd3 + isc + mit + zsh + ]; platforms = lib.platforms.unix; maintainers = [ lib.maintainers.olejorgenb ]; }; diff --git a/pkgs/stdenv/adapters.nix b/pkgs/stdenv/adapters.nix index 2304b3289b7eb..6a8b07b633efd 100644 --- a/pkgs/stdenv/adapters.nix +++ b/pkgs/stdenv/adapters.nix @@ -32,7 +32,11 @@ rec { # Override the compiler in stdenv for specific packages. - overrideCC = stdenv: cc: stdenv.override { allowedRequisites = null; cc = cc; }; + overrideCC = stdenv: cc: stdenv.override { + allowedRequisites = null; + cc = cc; + hasCC = cc != null; + }; # Add some arbitrary packages to buildInputs for specific packages. diff --git a/pkgs/stdenv/generic/check-meta.nix b/pkgs/stdenv/generic/check-meta.nix index 0bb07b6545450..502343f01fb32 100644 --- a/pkgs/stdenv/generic/check-meta.nix +++ b/pkgs/stdenv/generic/check-meta.nix @@ -46,7 +46,7 @@ let # import <nixpkgs> { config = { showDerivationWarnings = [ "maintainerless" ]; }; } showWarnings = config.showDerivationWarnings; - getName = attrs: attrs.name or ("${attrs.pname or "«name-missing»"}-${attrs.version or "«version-missing»"}"); + getNameWithVersion = attrs: attrs.name or ("${attrs.pname or "«name-missing»"}-${attrs.version or "«version-missing»"}"); allowUnfree = config.allowUnfree || builtins.getEnv "NIXPKGS_ALLOW_UNFREE" == "1"; @@ -123,7 +123,7 @@ let !allowUnfree && !allowUnfreePredicate attrs; - allowInsecureDefaultPredicate = x: builtins.elem (getName x) (config.permittedInsecurePackages or []); + allowInsecureDefaultPredicate = x: builtins.elem (getNameWithVersion x) (config.permittedInsecurePackages or []); allowInsecurePredicate = x: (config.allowInsecurePredicate or allowInsecureDefaultPredicate) x; hasAllowedInsecure = attrs: @@ -230,23 +230,23 @@ let $ export NIXPKGS_ALLOW_INSECURE=1 ${flakeNote} - b) for `nixos-rebuild` you can add ‘${lib.getName attrs}’ to + b) for `nixos-rebuild` you can add ‘${getNameWithVersion attrs}’ to `nixpkgs.config.permittedInsecurePackages` in the configuration.nix, like so: { nixpkgs.config.permittedInsecurePackages = [ - "${lib.getName attrs}" + "${getNameWithVersion attrs}" ]; } c) For `nix-env`, `nix-build`, `nix-shell` or any other Nix command you can add - ‘${lib.getName attrs}’ to `permittedInsecurePackages` in + ‘${getNameWithVersion attrs}’ to `permittedInsecurePackages` in ~/.config/nixpkgs/config.nix, like so: { permittedInsecurePackages = [ - "${lib.getName attrs}" + "${getNameWithVersion attrs}" ]; } @@ -257,9 +257,9 @@ let actualOutputs = attrs.outputs or [ "out" ]; missingOutputs = builtins.filter (output: ! builtins.elem output actualOutputs) expectedOutputs; in '' - The package ${getName attrs} has set meta.outputsToInstall to: ${builtins.concatStringsSep ", " expectedOutputs} + The package ${getNameWithVersion attrs} has set meta.outputsToInstall to: ${builtins.concatStringsSep ", " expectedOutputs} - however ${getName attrs} only has the outputs: ${builtins.concatStringsSep ", " actualOutputs} + however ${getNameWithVersion attrs} only has the outputs: ${builtins.concatStringsSep ", " actualOutputs} and is missing the following ouputs: @@ -269,9 +269,9 @@ let handleEvalIssue = { meta, attrs }: { reason , errormsg ? "" }: let msg = if inHydra - then "Failed to evaluate ${getName attrs}: «${reason}»: ${errormsg}" + then "Failed to evaluate ${getNameWithVersion attrs}: «${reason}»: ${errormsg}" else '' - Package ‘${getName attrs}’ in ${pos_str meta} ${errormsg}, refusing to evaluate. + Package ‘${getNameWithVersion attrs}’ in ${pos_str meta} ${errormsg}, refusing to evaluate. '' + (builtins.getAttr reason remediation) attrs; @@ -283,8 +283,8 @@ let handleEvalWarning = { meta, attrs }: { reason , errormsg ? "" }: let remediationMsg = (builtins.getAttr reason remediation) attrs; - msg = if inHydra then "Warning while evaluating ${getName attrs}: «${reason}»: ${errormsg}" - else "Package ${getName attrs} in ${pos_str meta} ${errormsg}, continuing anyway." + msg = if inHydra then "Warning while evaluating ${getNameWithVersion attrs}: «${reason}»: ${errormsg}" + else "Package ${getNameWithVersion attrs} in ${pos_str meta} ${errormsg}, continuing anyway." + (optionalString (remediationMsg != "") "\n${remediationMsg}"); isEnabled = findFirst (x: x == reason) null showWarnings; in if isEnabled != null then builtins.trace msg true else true; diff --git a/pkgs/test/haskell/setBuildTarget/default.nix b/pkgs/test/haskell/setBuildTarget/default.nix index f0c78c5104499..39d5db698bcd0 100644 --- a/pkgs/test/haskell/setBuildTarget/default.nix +++ b/pkgs/test/haskell/setBuildTarget/default.nix @@ -7,7 +7,15 @@ let mkDerivation { pname = "haskell-setBuildTarget"; version = "0.1.0.0"; - src = ./.; + src = lib.fileset.toSource { + root = ./.; + fileset = lib.fileset.unions [ + ./haskell-setBuildTarget.cabal + ./Bar.hs + ./Foo.hs + ./Setup.hs + ]; + }; isLibrary = false; isExecutable = true; executableHaskellDepends = [ base ]; diff --git a/pkgs/tools/admin/afterburn/default.nix b/pkgs/tools/admin/afterburn/default.nix index 5422760764123..10f196979d70b 100644 --- a/pkgs/tools/admin/afterburn/default.nix +++ b/pkgs/tools/admin/afterburn/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "afterburn"; - version = "5.5.1"; + version = "5.6.0"; src = fetchFromGitHub { owner = "coreos"; repo = "afterburn"; rev = "v${version}"; - sha256 = "sha256-3+FlW/y8EScJKaFvxa/hOlDF18kEtz2XyMdrDZgcMXs="; + sha256 = "sha256-IAYQJviSQHKeayI0uAEbXX+vQxfAbMOqP2fH+2VPamQ="; }; - cargoHash = "sha256-DTFvaXPr21qvx1FA1phueRxTgcrfhGgb9Vktah372Uo="; + cargoHash = "sha256-BJ8WV8FcRrwPHhCY2GiOWDP72/T3K9eJIrPeoIa+9Sk="; nativeBuildInputs = [ pkg-config ]; buildInputs = [ openssl ]; diff --git a/pkgs/tools/admin/aliyun-cli/default.nix b/pkgs/tools/admin/aliyun-cli/default.nix index 2bf466f8cadbb..7e9bbcc975925 100644 --- a/pkgs/tools/admin/aliyun-cli/default.nix +++ b/pkgs/tools/admin/aliyun-cli/default.nix @@ -2,17 +2,17 @@ buildGoModule rec { pname = "aliyun-cli"; - version = "3.0.207"; + version = "3.0.208"; src = fetchFromGitHub { rev = "v${version}"; owner = "aliyun"; repo = pname; fetchSubmodules = true; - sha256 = "sha256-tRNi1V91H+V1uVGs9SsLBjA51eGn0IH3ohjmH8dHYKY="; + sha256 = "sha256-kNZAjWoq3N+Lvu9JuU6UO4eZz2TcphbmqS1rZ75HgmU="; }; - vendorHash = "sha256-MnOqh3qAYAN2Lxt/RWWn4GgpdBFDojMbnzIsHx2pPSk="; + vendorHash = "sha256-wHdSDBxDArVbD5+EgGcIpQ+NLg5BKXo2v3WM4ni1efc="; subPackages = [ "main" ]; diff --git a/pkgs/tools/admin/aws-lambda-runtime-interface-emulator/default.nix b/pkgs/tools/admin/aws-lambda-runtime-interface-emulator/default.nix index 85509d92b369a..04abcfbcbbf1f 100644 --- a/pkgs/tools/admin/aws-lambda-runtime-interface-emulator/default.nix +++ b/pkgs/tools/admin/aws-lambda-runtime-interface-emulator/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "aws-lambda-runtime-interface-emulator"; - version = "1.19"; + version = "1.20"; src = fetchFromGitHub { owner = "aws"; repo = "aws-lambda-runtime-interface-emulator"; rev = "v${version}"; - sha256 = "sha256-z4drwdODY+FjrDpdXK7zXD1yiQmpdItzVjzKHj0ZTJk="; + sha256 = "sha256-cpfzjXjufiCe6AJsTj08vJ719MztHwY+6fMnk8vR82k="; }; vendorHash = "sha256-fGoqKDBg+O4uzGmhEIROsBvDS+6zWCzsXe8U6t98bqk="; diff --git a/pkgs/tools/admin/balena-cli/default.nix b/pkgs/tools/admin/balena-cli/default.nix index a2564a8d40b57..77677b071c83d 100644 --- a/pkgs/tools/admin/balena-cli/default.nix +++ b/pkgs/tools/admin/balena-cli/default.nix @@ -18,16 +18,16 @@ let }; in buildNpmPackage' rec { pname = "balena-cli"; - version = "18.2.4"; + version = "18.2.5"; src = fetchFromGitHub { owner = "balena-io"; repo = "balena-cli"; rev = "v${version}"; - hash = "sha256-cn6H8dFRZDK/ye0zqS+BXQzlBPpSfdotrp+TuQZ1Hko="; + hash = "sha256-jlkDjZN8Uljgqy/ooaJ3a0lomEbzaPI4FuMQhKDqLMA="; }; - npmDepsHash = "sha256-5ri/eb85MPzjBac20WFMiD2cBux4grIyjGflQMW66bQ="; + npmDepsHash = "sha256-gCBrhbhbFGbsBWX8AMLxzXw8CC5hYFJwserylSCuNFU="; postPatch = '' ln -s npm-shrinkwrap.json package-lock.json diff --git a/pkgs/tools/admin/credhub-cli/default.nix b/pkgs/tools/admin/credhub-cli/default.nix index db8bddcb9b1df..9e9f1247ef546 100644 --- a/pkgs/tools/admin/credhub-cli/default.nix +++ b/pkgs/tools/admin/credhub-cli/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "credhub-cli"; - version = "2.9.31"; + version = "2.9.33"; src = fetchFromGitHub { owner = "cloudfoundry-incubator"; repo = "credhub-cli"; rev = version; - sha256 = "sha256-pE+Xw5BuE+xJK7EkwB3nAy0w7PDVYApck+VHZ9O6Ua4="; + sha256 = "sha256-39ag4gc9EEn1wc+QdEDOi9ZOU5ie/+E7yecNtgCxfEk="; }; # these tests require network access that we're not going to give them diff --git a/pkgs/tools/admin/qovery-cli/default.nix b/pkgs/tools/admin/qovery-cli/default.nix index 58645fa7902c0..82a035bc442e0 100644 --- a/pkgs/tools/admin/qovery-cli/default.nix +++ b/pkgs/tools/admin/qovery-cli/default.nix @@ -9,16 +9,16 @@ buildGoModule rec { pname = "qovery-cli"; - version = "0.94.11"; + version = "0.94.14"; src = fetchFromGitHub { owner = "Qovery"; repo = "qovery-cli"; rev = "refs/tags/v${version}"; - hash = "sha256-2p3KUIu3L78X2/i5B6+RoMmoyG5vqg8RWDXeUYlpqwU="; + hash = "sha256-A2U/NoVbUW0U5/1Q/jJ5MFBrcHB1c23EMAY3bwWZ/R4="; }; - vendorHash = "sha256-OKerPm5odNWCD5AqfNHqcQSeWu53ZVqCbIowzf6tO9A="; + vendorHash = "sha256-qrDadHGhjwsAIfIQIkUeT7Tehv1sTtsfzgPyKxc5zJE="; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/tools/audio/catnip-gtk4/default.nix b/pkgs/tools/audio/catnip-gtk4/default.nix index da677d71bc03a..5d0f9182ce243 100644 --- a/pkgs/tools/audio/catnip-gtk4/default.nix +++ b/pkgs/tools/audio/catnip-gtk4/default.nix @@ -22,18 +22,20 @@ buildGoModule { vendorHash = "sha256-gcr3e5Fm2xCTOoTgl71Dv3rxI6gQbqRz0M1NO7fAZk0="; nativeBuildInputs = [ + gobject-introspection pkg-config wrapGAppsHook4 ]; buildInputs = [ - gobject-introspection gtk4 libadwaita ]; ldflags = [ "-s" "-w" ]; + enableParallelBuilding = true; + meta = with lib; { description = "GTK4 frontend for catnip"; homepage = "https://github.com/diamondburned/catnip-gtk4"; diff --git a/pkgs/tools/bootloaders/refind/default.nix b/pkgs/tools/bootloaders/refind/default.nix index 0a8af657ff440..9c4cda573e589 100644 --- a/pkgs/tools/bootloaders/refind/default.nix +++ b/pkgs/tools/bootloaders/refind/default.nix @@ -146,7 +146,7 @@ stdenv.mkDerivation rec { Linux kernels that provide EFI stub support. ''; homepage = "http://refind.sourceforge.net/"; - maintainers = with maintainers; [ AndersonTorres samueldr chewblacka ]; + maintainers = with maintainers; [ AndersonTorres chewblacka ]; platforms = [ "i686-linux" "x86_64-linux" "aarch64-linux" ]; license = licenses.gpl3Plus; }; diff --git a/pkgs/tools/filesystems/dupe-krill/default.nix b/pkgs/tools/filesystems/dupe-krill/default.nix index 09c7ac0e2f4cc..7c2594a8adef7 100644 --- a/pkgs/tools/filesystems/dupe-krill/default.nix +++ b/pkgs/tools/filesystems/dupe-krill/default.nix @@ -2,19 +2,19 @@ rustPlatform.buildRustPackage rec { pname = "dupe-krill"; - version = "1.4.8"; + version = "1.4.9"; src = fetchFromGitHub { owner = "kornelski"; repo = pname; rev = "v${version}"; - sha256 = "sha256-2fT9bw5LgJUQ0tm1T/vV5SaDjNH0OGKt7QUQLd7nmOs="; + sha256 = "sha256-ceeKG45OQLxiYcwq2Kumbpd+lkyY+W/og1/6Zdpd3zo="; postFetch = '' cp ${./Cargo.lock} $out/Cargo.lock ''; }; - cargoSha256 = "sha256-JUcIDUVzSLzblb2EbmSfuCAB+S0fyW6wpGF0b/xR+b0="; + cargoHash = "sha256-jEMvvFOcFij4lT/5Y5xARaVURT/evV9u1Vkqtm4al+g="; meta = with lib; { description = "Fast file deduplicator"; diff --git a/pkgs/tools/filesystems/sandboxfs/default.nix b/pkgs/tools/filesystems/sandboxfs/default.nix deleted file mode 100644 index 3f306a904fd84..0000000000000 --- a/pkgs/tools/filesystems/sandboxfs/default.nix +++ /dev/null @@ -1,35 +0,0 @@ -{ stdenv -, lib -, rustPlatform -, fetchCrate -, pkg-config -, installShellFiles -, fuse -}: - -rustPlatform.buildRustPackage rec { - pname = "sandboxfs"; - version = "0.2.0"; - - src = fetchCrate { - inherit pname version; - sha256 = "sha256-nrrkFYAf7HqaGFruolNTkXzy4ID6/vipxd+fOCKYARM="; - }; - - cargoSha256 = "sha256-izz10ePmEt2xxOyR4NODIMAcY9d4ODo677mq+DVf4RI="; - - nativeBuildInputs = [ pkg-config installShellFiles ]; - - buildInputs = [ fuse ]; - - postInstall = "installManPage man/sandboxfs.1"; - - meta = with lib; { - broken = stdenv.isDarwin; - description = "Virtual file system for sandboxing"; - homepage = "https://github.com/bazelbuild/sandboxfs"; - license = with licenses; [ asl20 ]; - maintainers = with maintainers; [ jeremyschlatter ]; - mainProgram = "sandboxfs"; - }; -} diff --git a/pkgs/tools/games/er-patcher/default.nix b/pkgs/tools/games/er-patcher/default.nix index 084dfdcc10987..03881277749a8 100644 --- a/pkgs/tools/games/er-patcher/default.nix +++ b/pkgs/tools/games/er-patcher/default.nix @@ -6,13 +6,13 @@ stdenvNoCC.mkDerivation rec { pname = "er-patcher"; - version = "1.10.1-1"; + version = "1.12-1"; src = fetchFromGitHub { owner = "gurrgur"; repo = "er-patcher"; rev = "v${version}"; - sha256 = "sha256-vSCZQBI9Q+7m+TT9pS7R5Fw3BgTxznbFAArJ7J6+tUQ="; + sha256 = "sha256-IN7JKaPexc6XLOymBWKbwtjhIlSEy3NhXoPpLiIc7qY="; }; buildInputs = [ diff --git a/pkgs/tools/graphics/scrot/default.nix b/pkgs/tools/graphics/scrot/default.nix index 4deda64dc479a..d969024f2b5d8 100644 --- a/pkgs/tools/graphics/scrot/default.nix +++ b/pkgs/tools/graphics/scrot/default.nix @@ -15,13 +15,13 @@ stdenv.mkDerivation rec { pname = "scrot"; - version = "1.10"; + version = "1.11.1"; src = fetchFromGitHub { owner = "resurrecting-open-source-projects"; repo = pname; rev = version; - sha256 = "sha256-ypPUQt3N30qUw5ecVRhwz3Hnh9lTOnbAm7o5tdxjyds="; + sha256 = "sha256-MUmvzZMzzKKw5GjOUhpdrMIgKO9/i9RDqDtTsSghd18="; }; nativeBuildInputs = [ diff --git a/pkgs/tools/graphics/wdisplays/default.nix b/pkgs/tools/graphics/wdisplays/default.nix index baa78027648b1..d015c467c200d 100644 --- a/pkgs/tools/graphics/wdisplays/default.nix +++ b/pkgs/tools/graphics/wdisplays/default.nix @@ -18,7 +18,7 @@ stdenv.mkDerivation (finalAttrs: { meta = with lib; { description = "Graphical application for configuring displays in Wayland compositors"; homepage = "https://github.com/luispabon/wdisplays"; - maintainers = with maintainers; [ lheckemann ma27 ]; + maintainers = with maintainers; [ ma27 ]; license = licenses.gpl3Plus; platforms = platforms.linux; mainProgram = "wdisplays"; diff --git a/pkgs/tools/inputmethods/ibus-engines/ibus-typing-booster/default.nix b/pkgs/tools/inputmethods/ibus-engines/ibus-typing-booster/default.nix index 0a1694267a35f..d0581164d663c 100644 --- a/pkgs/tools/inputmethods/ibus-engines/ibus-typing-booster/default.nix +++ b/pkgs/tools/inputmethods/ibus-engines/ibus-typing-booster/default.nix @@ -13,13 +13,13 @@ in stdenv.mkDerivation rec { pname = "ibus-typing-booster"; - version = "2.25.8"; + version = "2.25.9"; src = fetchFromGitHub { owner = "mike-fabian"; repo = "ibus-typing-booster"; rev = version; - hash = "sha256-0fjtLsIoMiI7zhaxU8RcoG4k48e02sJZvpjEBDfB/I0="; + hash = "sha256-dQifLJjgTKkFYBOJKxGXA1w97UBa0Bh56I6nRk0GVj0="; }; nativeBuildInputs = [ autoreconfHook pkg-config wrapGAppsHook3 gobject-introspection ]; diff --git a/pkgs/tools/misc/cyberchef/default.nix b/pkgs/tools/misc/cyberchef/default.nix index db888fccbf9bc..c8e57c208982d 100644 --- a/pkgs/tools/misc/cyberchef/default.nix +++ b/pkgs/tools/misc/cyberchef/default.nix @@ -5,11 +5,11 @@ stdenv.mkDerivation rec { pname = "cyberchef"; - version = "10.18.8"; + version = "10.19.0"; src = fetchzip { url = "https://github.com/gchq/CyberChef/releases/download/v${version}/CyberChef_v${version}.zip"; - sha256 = "sha256-1Ta0fgrwBHfUlj7aJkiAHV7MmHRlXJloYt2P889ya+U="; + sha256 = "sha256-jhT1HcAXNRBNgZcRv6yYZ8xTIHo5EUe71KpAgUx8FCU="; stripRoot = false; }; diff --git a/pkgs/tools/misc/eget/default.nix b/pkgs/tools/misc/eget/default.nix index 1bf2b7f10110e..89aa759741ae8 100644 --- a/pkgs/tools/misc/eget/default.nix +++ b/pkgs/tools/misc/eget/default.nix @@ -10,13 +10,13 @@ buildGoModule rec { pname = "eget"; - version = "1.3.3"; + version = "1.3.4"; src = fetchFromGitHub { owner = "zyedidia"; repo = pname; rev = "v${version}"; - sha256 = "sha256-OOqfZ2uS3sYBH9xrlQN1iSNdNE9RGi6qiDXfPgf2aB0="; + sha256 = "sha256-jhVUYyp6t5LleVotQQme07IJVdVnIOVFFtKEmzt8e2k="; }; vendorHash = "sha256-A3lZtV0pXh4KxINl413xGbw2Pz7OzvIQiFSRubH428c="; diff --git a/pkgs/tools/misc/fdupes/default.nix b/pkgs/tools/misc/fdupes/default.nix index fefb3992749b9..c82d2c861f0ef 100644 --- a/pkgs/tools/misc/fdupes/default.nix +++ b/pkgs/tools/misc/fdupes/default.nix @@ -10,13 +10,13 @@ stdenv.mkDerivation rec { pname = "fdupes"; - version = "2.3.0"; + version = "2.3.1"; src = fetchFromGitHub { owner = "adrianlopezroche"; repo = "fdupes"; rev = "v${version}"; - hash = "sha256-BW6a5vKRAuXs/zWPHhtZs6Y4scyCEfqHEAkGUSUiwkI="; + hash = "sha256-yOUgPa13DHDcuEqJMpBQVMOKFH/rlH44rWiIPRwnztM="; }; nativeBuildInputs = [ diff --git a/pkgs/tools/misc/fend/default.nix b/pkgs/tools/misc/fend/default.nix index 2e7c22672330c..6986bc69645a8 100644 --- a/pkgs/tools/misc/fend/default.nix +++ b/pkgs/tools/misc/fend/default.nix @@ -18,16 +18,16 @@ rustPlatform.buildRustPackage rec { pname = "fend"; - version = "1.4.8"; + version = "1.4.9"; src = fetchFromGitHub { owner = "printfn"; repo = "fend"; rev = "v${version}"; - hash = "sha256-i4h2QYgA1XX+qHOEH07PR3G/0SSA8a413vm9T39TuYQ="; + hash = "sha256-ZfDoDOHQlvuPSX6OWQOX7HdeSVUfAlOpHVwcNPDEeU8="; }; - cargoHash = "sha256-EhumvDwXNXB0Vp3qWkJs0y0gEwiy3Z9/3KZ92YDTlqk="; + cargoHash = "sha256-Xwf3Mxvso9mb1YYTuKMzLhtJNX5b2dmGi05TZ111cMc="; nativeBuildInputs = [ pandoc installShellFiles pkg-config copyDesktopItems ]; buildInputs = [ pkg-config openssl ] ++ lib.optionals stdenv.isDarwin [ darwin.apple_sdk.frameworks.Security ]; diff --git a/pkgs/tools/misc/gaphor/default.nix b/pkgs/tools/misc/gaphor/default.nix index a8afdef6a2bff..68f922d4abd81 100644 --- a/pkgs/tools/misc/gaphor/default.nix +++ b/pkgs/tools/misc/gaphor/default.nix @@ -76,7 +76,7 @@ buildPythonApplication rec { meta = with lib; { description = "Simple modeling tool written in Python"; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; homepage = "https://github.com/gaphor/gaphor"; license = licenses.asl20; platforms = [ "x86_64-linux" ]; diff --git a/pkgs/tools/misc/gh-dash/default.nix b/pkgs/tools/misc/gh-dash/default.nix index 91de04a0565d1..aa65da648166c 100644 --- a/pkgs/tools/misc/gh-dash/default.nix +++ b/pkgs/tools/misc/gh-dash/default.nix @@ -7,13 +7,13 @@ buildGoModule rec { pname = "gh-dash"; - version = "4.1.2"; + version = "4.2.0"; src = fetchFromGitHub { owner = "dlvhdr"; repo = "gh-dash"; rev = "v${version}"; - hash = "sha256-crMlld0Lrfy/MPjQd071azRpvdII8aC2nbSRxBxYu+U="; + hash = "sha256-9aXGNLaNXzDGJVTAXhOPt8XNxnWUpmiXCa60jsIUja8="; }; vendorHash = "sha256-JOd2czYWVgE1jBfeuoVRp+oE/asyk50o5Pf021jD5mY="; @@ -21,7 +21,7 @@ buildGoModule rec { ldflags = [ "-s" "-w" - "-X github.com/dlvhdr/gh-dash/cmd.Version=${version}" + "-X github.com/dlvhdr/gh-dash/v4/cmd.Version=${version}" ]; passthru.tests = { diff --git a/pkgs/tools/misc/goose/default.nix b/pkgs/tools/misc/goose/default.nix index 994aa5df6ec5f..e6505129b5b93 100644 --- a/pkgs/tools/misc/goose/default.nix +++ b/pkgs/tools/misc/goose/default.nix @@ -6,17 +6,17 @@ buildGoModule rec { pname = "goose"; - version = "3.20.0"; + version = "3.21.1"; src = fetchFromGitHub { owner = "pressly"; repo = pname; rev = "v${version}"; - hash = "sha256-DgxFczS2YAnicf8RTMf7gDzCtDyj/zqzrGfeb3YcYzg="; + hash = "sha256-Klmgw5dYt2/JYc0nuqIZwos3/onlRwsfzTOJ/Yi2pMw="; }; proxyVendor = true; - vendorHash = "sha256-KzIOylWrsOF5oAuuFKUKVSnSJWq3KWZ3Ot7sryNnjIY="; + vendorHash = "sha256-V875bGtp6Aki64TM3x0n1aERc5sVPIDZ3rNPF9D/osk="; # skipping: end-to-end tests require a docker daemon postPatch = '' diff --git a/pkgs/tools/misc/grub/default.nix b/pkgs/tools/misc/grub/default.nix index ce58f6ea0a18a..545ef57d4b081 100644 --- a/pkgs/tools/misc/grub/default.nix +++ b/pkgs/tools/misc/grub/default.nix @@ -201,6 +201,6 @@ stdenv.mkDerivation rec { platforms = if xenSupport then [ "x86_64-linux" "i686-linux" ] else platforms.gnu ++ platforms.linux; - maintainers = [ maintainers.samueldr ]; + maintainers = [ ]; }; }) diff --git a/pkgs/tools/misc/gummy/default.nix b/pkgs/tools/misc/gummy/default.nix index 9d5b473c3b9c4..192c1e3261a56 100644 --- a/pkgs/tools/misc/gummy/default.nix +++ b/pkgs/tools/misc/gummy/default.nix @@ -1,6 +1,7 @@ { lib , stdenv -, fetchFromGitHub +, fetchFromGitea +, substituteAll , testers , gummy , cmake @@ -8,18 +9,25 @@ , libXext , sdbus-cpp , udev +, xcbutilimage , coreutils +, cli11 +, ddcutil +, fmt +, nlohmann_json +, spdlog }: stdenv.mkDerivation rec { pname = "gummy"; - version = "0.3"; + version = "0.6.0"; - src = fetchFromGitHub { - owner = "fushko"; + src = fetchFromGitea { + domain = "codeberg.org"; + owner = "fusco"; repo = "gummy"; rev = version; - sha256 = "sha256-dw2yOXTS61OIe+NOq8MPydhkZvTit13eC7cbL5nFseg="; + hash = "sha256-kATieFf+dEpcYgSEPoETacP7R+u2dOrg7rOhIkNQ1uE="; }; nativeBuildInputs = [ @@ -27,25 +35,32 @@ stdenv.mkDerivation rec { ]; buildInputs = [ + cli11 + ddcutil + fmt libX11 libXext + nlohmann_json sdbus-cpp + spdlog udev + xcbutilimage ]; cmakeFlags = [ "-DUDEV_DIR=${placeholder "out"}/lib/udev" + "-DUDEV_RULES_DIR=${placeholder "out"}/lib/udev/rules.d" ]; # Fixes the "gummy start" command, without this it cannot find the binary. # Setting this through cmake does not seem to work. postPatch = '' - substituteInPlace src/gummy/gummy.cpp \ + substituteInPlace gummyd/gummyd/api.cpp \ --replace "CMAKE_INSTALL_DAEMON_PATH" "\"${placeholder "out"}/libexec/gummyd\"" ''; preFixup = '' - substituteInPlace $out/lib/udev/99-gummy.rules \ + substituteInPlace $out/lib/udev/rules.d/99-gummy.rules \ --replace "/bin/chmod" "${coreutils}/bin/chmod" ln -s $out/libexec/gummyd $out/bin/gummyd @@ -54,13 +69,13 @@ stdenv.mkDerivation rec { passthru.tests.version = testers.testVersion { package = gummy; }; meta = with lib; { - homepage = "https://github.com/Fushko/gummy"; + homepage = "https://codeberg.org/fusco/gummy"; description = "Brightness and temperature manager for X11"; longDescription = '' CLI screen manager for X11 that allows automatic and manual brightness/temperature adjustments, via backlight (currently only for embedded displays) and gamma. Multiple monitors are supported. ''; license = licenses.gpl3Only; - maintainers = [ maintainers.ivar ]; + maintainers = with maintainers; [ ivar ]; }; } diff --git a/pkgs/tools/misc/mailman-rss/default.nix b/pkgs/tools/misc/mailman-rss/default.nix deleted file mode 100644 index d71ee8795528c..0000000000000 --- a/pkgs/tools/misc/mailman-rss/default.nix +++ /dev/null @@ -1,26 +0,0 @@ -{ lib, python3Packages, fetchPypi, withTwitter ? false}: - -python3Packages.buildPythonApplication rec { - pname = "mailman-rss"; - version = "0.2.4"; - - src = fetchPypi { - inherit pname version; - sha256 = "1brrik70jyagxa9l0cfmlxvqpilwj1q655bphxnvjxyganxf4c00"; - }; - - propagatedBuildInputs = with python3Packages; [ python-dateutil future requests beautifulsoup4 ] - ++ lib.optional withTwitter python3Packages.twitter - ; - - # No tests in Pypi Tarball - doCheck = false; - - meta = with lib; { - description = "Mailman archive -> rss converter"; - homepage = "https://github.com/kyamagu/mailman-rss"; - license = licenses.mit; - maintainers = with maintainers; [ samueldr ]; - mainProgram = "mailman-rss"; - }; -} diff --git a/pkgs/tools/misc/phrase-cli/default.nix b/pkgs/tools/misc/phrase-cli/default.nix index fa262ec1e583c..7cd0a3cabcba9 100644 --- a/pkgs/tools/misc/phrase-cli/default.nix +++ b/pkgs/tools/misc/phrase-cli/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "phrase-cli"; - version = "2.28.0"; + version = "2.28.1"; src = fetchFromGitHub { owner = "phrase"; repo = "phrase-cli"; rev = version; - sha256 = "sha256-jaGCNWbq/CDxJXiGqueM1mj86K26Eyr0ND08Pt0IEj0="; + sha256 = "sha256-pGh1OorNF2fe5rKkszQc2PadrrN/Kpx0+7E5fJERYpQ="; }; - vendorHash = "sha256-MwwIzgOmEUcTxdlJWKZU8A4fH3efuNIeS/mFceBYBY0="; + vendorHash = "sha256-lXgTi6hYDBK1QGw8RQoNIHIlmyHPM6z8RYAmbW7N42s="; ldflags = [ "-X=github.com/phrase/phrase-cli/cmd.PHRASE_CLIENT_VERSION=${version}" ]; diff --git a/pkgs/tools/misc/tbls/default.nix b/pkgs/tools/misc/tbls/default.nix index 427e21e2ad258..d5ceaa6f52de3 100644 --- a/pkgs/tools/misc/tbls/default.nix +++ b/pkgs/tools/misc/tbls/default.nix @@ -9,13 +9,13 @@ buildGoModule rec { pname = "tbls"; - version = "1.76.0"; + version = "1.76.1"; src = fetchFromGitHub { owner = "k1LoW"; repo = "tbls"; rev = "v${version}"; - hash = "sha256-tVilEpSmCHx+m8HwcsyNDVIUICccndnn4vI4oOa5t/w="; + hash = "sha256-xSmw3udoTTEpEpfoyU48RAlN8gR/cfqco1DQ8qs5W94="; }; vendorHash = "sha256-ALjpU5el6Tmzsw2f5/AizFBuk+zJj9RKe9KHdE0AOrM="; diff --git a/pkgs/tools/misc/ttchat/default.nix b/pkgs/tools/misc/ttchat/default.nix index 5aad1527df42d..ec62357cbbedd 100644 --- a/pkgs/tools/misc/ttchat/default.nix +++ b/pkgs/tools/misc/ttchat/default.nix @@ -17,7 +17,7 @@ buildGoModule rec { description = "Connect to a Twitch channel's chat from your terminal"; homepage = "https://github.com/atye/ttchat"; license = licenses.asl20; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; mainProgram = "ttchat"; }; } diff --git a/pkgs/tools/misc/tydra/default.nix b/pkgs/tools/misc/tydra/default.nix index 551519695c432..75c2effedcc68 100644 --- a/pkgs/tools/misc/tydra/default.nix +++ b/pkgs/tools/misc/tydra/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "tydra"; - version = "1.0.2"; + version = "1.0.3"; src = fetchFromGitHub { owner = "Mange"; repo = pname; rev = "v${version}"; - sha256 = "1kvyski3qy2lwlpipynq894i0g9x2j4a1iy2mgdwfibfyfkv2jnm"; + sha256 = "sha256-bH/W54b7UHdkbgLXAd+l5I6UAKjWDMW+I5mfwT4yEEY="; }; - cargoSha256 = "0handd5vxxvmlllzxhvwgadl4r7yc78f068r8jryprpap31azg3a"; + cargoHash = "sha256-emZWQHOgYUQzCa/SmztSLa19bB1aJpPUiBg2C7w6W8M="; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/tools/misc/url-parser/default.nix b/pkgs/tools/misc/url-parser/default.nix index cb9f058c0d9dd..1a84e92d322f5 100644 --- a/pkgs/tools/misc/url-parser/default.nix +++ b/pkgs/tools/misc/url-parser/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "url-parser"; - version = "2.0.4"; + version = "2.0.5"; src = fetchFromGitHub { owner = "thegeeklab"; repo = "url-parser"; rev = "refs/tags/v${version}"; - hash = "sha256-zCtCLhIWQQWKD2RM+p7HxZSPHnmo7SIZFYGT4nBCWLY="; + hash = "sha256-tMbB0u0BxoWGLPOsebwxd0QQcAlpSuhfCRdBEGpLpRU="; }; - vendorHash = "sha256-bUQNZQT13VZuglFW0zdSOBzBLDjH5PiMkKHmkSZJupw="; + vendorHash = "sha256-gLhVbd0rca+khY8i776EN/PoySNq/oYYNFbioMjgxPc="; ldflags = [ "-s" diff --git a/pkgs/tools/misc/wasm-tools/default.nix b/pkgs/tools/misc/wasm-tools/default.nix index dc83c150d11e4..e89628a117ff6 100644 --- a/pkgs/tools/misc/wasm-tools/default.nix +++ b/pkgs/tools/misc/wasm-tools/default.nix @@ -5,19 +5,19 @@ rustPlatform.buildRustPackage rec { pname = "wasm-tools"; - version = "1.210.0"; + version = "1.211.1"; src = fetchFromGitHub { owner = "bytecodealliance"; repo = pname; rev = "v${version}"; - hash = "sha256-qp00/cgx2FpdBbt5CXYFD/V6SOtz7VQfRq0zJsELVuc="; + hash = "sha256-xd5/QB6/V8cyoygShmcIzUgXZNs+kBuPtKy56BSoxKo="; fetchSubmodules = true; }; # Disable cargo-auditable until https://github.com/rust-secure-code/cargo-auditable/issues/124 is solved. auditable = false; - cargoHash = "sha256-jNr0oyd+8E5ppPcV5LMAbOro4ZodgskCHAhe5TgC/6I="; + cargoHash = "sha256-H3eEwVZB6xzZwW5Bvgs7yPV58QUNvLSWSDigLzs2uG0="; cargoBuildFlags = [ "--package" "wasm-tools" ]; cargoTestFlags = [ "--all" ]; diff --git a/pkgs/tools/misc/xmonad-log/deps.nix b/pkgs/tools/misc/xmonad-log/deps.nix deleted file mode 100644 index f5a7c7e5dd1dd..0000000000000 --- a/pkgs/tools/misc/xmonad-log/deps.nix +++ /dev/null @@ -1,12 +0,0 @@ -# This file was generated by https://github.com/kamilchm/go2nix v1.2.1 -[ - { - goPackagePath = "github.com/godbus/dbus"; - fetch = { - type = "git"; - url = "https://github.com/godbus/dbus"; - rev = "a389bdde4dd695d414e47b755e95e72b7826432c"; - sha256 = "1ckvg15zdsgmbn4mi36cazkb407ixc9mmyf7vwj8b8wi3d00rgn9"; - }; - } -] diff --git a/pkgs/tools/misc/yubico-piv-tool/default.nix b/pkgs/tools/misc/yubico-piv-tool/default.nix index d3c73b62a7b65..eb3a88d1faac4 100644 --- a/pkgs/tools/misc/yubico-piv-tool/default.nix +++ b/pkgs/tools/misc/yubico-piv-tool/default.nix @@ -10,9 +10,9 @@ , help2man , cmake , zlib -, withApplePCSC ? stdenv.isDarwin , nix-update-script , testers +, withApplePCSC ? stdenv.isDarwin }: stdenv.mkDerivation (finalAttrs: { @@ -29,7 +29,7 @@ stdenv.mkDerivation (finalAttrs: { }; postPatch = '' - substituteInPlace CMakeLists.txt --replace "-Werror" "" + substituteInPlace CMakeLists.txt --replace-fail "-Werror" "" ''; nativeBuildInputs = [ @@ -41,32 +41,37 @@ stdenv.mkDerivation (finalAttrs: { buildInputs = [ openssl - check zlib.dev ] ++ (if withApplePCSC then [ PCSC ] else [ pcsclite ]); cmakeFlags = [ - "-DGENERATE_MAN_PAGES=ON" - "-DCMAKE_INSTALL_BINDIR=bin" - "-DCMAKE_INSTALL_INCLUDEDIR=include" - "-DCMAKE_INSTALL_MANDIR=share/man" - "-DCMAKE_INSTALL_LIBDIR=lib" + (lib.cmakeBool "GENERATE_MAN_PAGES" true) + (lib.cmakeFeature "BACKEND" (if withApplePCSC then "macscard" else "pcsc")) + (lib.cmakeFeature "CMAKE_INSTALL_BINDIR" "bin") + (lib.cmakeFeature "CMAKE_INSTALL_INCLUDEDIR" "include") + (lib.cmakeFeature "CMAKE_INSTALL_LIBDIR" "lib") + (lib.cmakeFeature "CMAKE_INSTALL_MANDIR" "share/man") ]; - configureFlags = [ "--with-backend=${if withApplePCSC then "macscard" else "pcsc"}" ]; + doCheck = true; + + nativeCheckInputs = [ check ]; passthru = { updateScript = nix-update-script { extraArgs = [ "--version-regex" "yubico-piv-tool-([0-9.]+)$" ]; }; - tests.version = testers.testVersion { - package = finalAttrs.finalPackage; - command = "yubico-piv-tool --version"; + tests = { + pkg-config = testers.testMetaPkgConfig finalAttrs.finalPackage; + version = testers.testVersion { + package = finalAttrs.finalPackage; + command = "yubico-piv-tool --version"; + }; }; }; - meta = with lib; { + meta = { homepage = "https://developers.yubico.com/yubico-piv-tool/"; changelog = "https://developers.yubico.com/yubico-piv-tool/Release_Notes.html"; description = '' @@ -80,9 +85,10 @@ stdenv.mkDerivation (finalAttrs: { certificates, and create certificate requests, and other operations. A shared library and a command-line tool is included. ''; - license = licenses.bsd2; - platforms = platforms.all; - maintainers = with maintainers; [ viraptor anthonyroussel ]; + license = lib.licenses.bsd2; + platforms = lib.platforms.all; + maintainers = with lib.maintainers; [ viraptor anthonyroussel ]; mainProgram = "yubico-piv-tool"; + pkgConfigModules = [ "ykcs11" "ykpiv" ]; }; }) diff --git a/pkgs/tools/networking/aircrack-ng/default.nix b/pkgs/tools/networking/aircrack-ng/default.nix index b4cab28e3ebdf..6bfd3136dc984 100644 --- a/pkgs/tools/networking/aircrack-ng/default.nix +++ b/pkgs/tools/networking/aircrack-ng/default.nix @@ -1,34 +1,103 @@ -{ lib, stdenv, fetchurl, libpcap, openssl, zlib, wirelesstools -, iw, ethtool, pciutils, libnl, pkg-config, makeWrapper -, autoreconfHook, usbutils }: +{ lib +, stdenv +, fetchFromGitHub +, fetchzip +, makeWrapper +, autoreconfHook +, pkg-config +, openssl +, libgcrypt +, cmocka +, expect +, sqlite +, pcre2 + # Linux +, libpcap +, zlib +, wirelesstools +, iw +, ethtool +, pciutils +, libnl +, usbutils +, tcpdump +, hostapd +, wpa_supplicant +, screen + + # Cygwin +, libiconv + + # options +, enableExperimental ? true +, useGcrypt ? false +, enableAirolib ? true +, enableRegex ? true +, useAirpcap ? stdenv.isCygwin +}: +let + airpcap-sdk = fetchzip { + pname = "airpcap-sdk"; + version = "4.1.1"; + url = "https://support.riverbed.com/bin/support/download?sid=l3vk3eu649usgu3rj60uncjqqu"; + hash = "sha256-kJhnUvhnF9F/kIJx9NcbRUfIXUSX/SRaO/SWNvdkVT8="; + stripRoot = false; + extension = "zip"; + }; +in stdenv.mkDerivation rec { pname = "aircrack-ng"; version = "1.7"; - src = fetchurl { - url = "https://download.aircrack-ng.org/aircrack-ng-${version}.tar.gz"; - sha256 = "1hsq1gwmafka4bahs6rc8p98yi542h9a502h64bjlygpr3ih99q5"; + src = fetchFromGitHub { + owner = "aircrack-ng"; + repo = "aircrack-ng"; + rev = version; + hash = "sha256-niQDwiqi5GtBW5HIn0endnqPb/MqllcjsjXw4pTyFKY="; }; + postPatch = lib.optionalString stdenv.isLinux '' + substituteInPlace lib/osdep/linux.c --replace-warn /usr/local/bin ${lib.escapeShellArg (lib.makeBinPath [ + wirelesstools + ])} + ''; + + configureFlags = [ + (lib.withFeature enableExperimental "experimental") + (lib.withFeature useGcrypt "gcrypt") + (lib.withFeatureAs useAirpcap "airpcap" airpcap-sdk) + ]; + nativeBuildInputs = [ pkg-config makeWrapper autoreconfHook ]; - buildInputs = [ libpcap openssl zlib libnl iw ethtool pciutils ]; + buildInputs = + lib.singleton (if useGcrypt then libgcrypt else openssl) + ++ lib.optionals stdenv.isLinux [ libpcap zlib libnl iw ethtool pciutils ] + ++ lib.optional (stdenv.isCygwin && stdenv.isClang) libiconv + ++ lib.optional enableAirolib sqlite + ++ lib.optional enableRegex pcre2 + ++ lib.optional useAirpcap airpcap-sdk; - patchPhase = '' - sed -e 's@/usr/local/bin@'${wirelesstools}@ -i lib/osdep/linux.c - ''; + nativeCheckInputs = [ cmocka expect ]; - postFixup = '' - wrapProgram $out/bin/airmon-ng --prefix PATH : ${lib.makeBinPath [ - ethtool iw pciutils usbutils - ]} + postFixup = lib.optionalString stdenv.isLinux '' + wrapProgram "$out/bin/airmon-ng" --prefix PATH : ${lib.escapeShellArg (lib.makeBinPath [ + ethtool + iw + pciutils + usbutils + ])} ''; - meta = with lib; { - description = "Wireless encryption cracking tools"; - homepage = "http://www.aircrack-ng.org/"; - license = licenses.gpl2Plus; - maintainers = with maintainers; [ ]; - platforms = platforms.linux; + installCheckTarget = "integration"; + nativeInstallCheckInputs = [ cmocka expect ] ++ lib.optionals stdenv.isLinux [ tcpdump hostapd wpa_supplicant screen ]; + + meta = { + description = "WiFi security auditing tools suite"; + homepage = "https://www.aircrack-ng.org/"; + license = lib.licenses.gpl2Plus; + maintainers = with lib.maintainers; [ caralice ]; + platforms = with lib.platforms; builtins.concatLists [ linux darwin cygwin netbsd openbsd freebsd illumos ]; + changelog = "https://github.com/aircrack-ng/aircrack-ng/blob/${src.rev}/ChangeLog"; }; } diff --git a/pkgs/tools/networking/burpsuite/default.nix b/pkgs/tools/networking/burpsuite/default.nix index bc3ab38b74847..a234ad577d84a 100644 --- a/pkgs/tools/networking/burpsuite/default.nix +++ b/pkgs/tools/networking/burpsuite/default.nix @@ -85,7 +85,7 @@ buildFHSEnv { license = licenses.unfree; platforms = jdk.meta.platforms; hydraPlatforms = [ ]; - maintainers = with maintainers; [ arcayr bennofs ]; + maintainers = with maintainers; [ bennofs ]; mainProgram = "burpsuite"; }; } diff --git a/pkgs/tools/networking/checkip/default.nix b/pkgs/tools/networking/checkip/default.nix index 1ac21fcb84e28..9ef38a197efff 100644 --- a/pkgs/tools/networking/checkip/default.nix +++ b/pkgs/tools/networking/checkip/default.nix @@ -5,13 +5,13 @@ buildGoModule rec { pname = "checkip"; - version = "0.47.4"; + version = "0.47.5"; src = fetchFromGitHub { owner = "jreisinger"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-b30Biyncg48Lv78LlojnWVwLDt30QwPhyxi97n6XjY4="; + hash = "sha256-iAMSNz5TDSId0gBm982hFkM+JR4naEREXKS7mi6z5dw="; }; vendorHash = "sha256-awqaDEdWILm8RcQ8hrtJFMTJQA5TzGZhiBTMfexmtA0="; diff --git a/pkgs/tools/networking/cloudflare-warp/default.nix b/pkgs/tools/networking/cloudflare-warp/default.nix index 0e36b71c55b3b..4a0f842071369 100644 --- a/pkgs/tools/networking/cloudflare-warp/default.nix +++ b/pkgs/tools/networking/cloudflare-warp/default.nix @@ -87,7 +87,6 @@ stdenv.mkDerivation rec { license = licenses.unfree; mainProgram = "warp-cli"; maintainers = with maintainers; [ - wolfangaukang devpikachu marcusramberg ]; diff --git a/pkgs/tools/networking/dae/default.nix b/pkgs/tools/networking/dae/default.nix index 89f961c473922..2f8f4236837a3 100644 --- a/pkgs/tools/networking/dae/default.nix +++ b/pkgs/tools/networking/dae/default.nix @@ -1,7 +1,8 @@ -{ lib -, clang -, fetchFromGitHub -, buildGoModule +{ + lib, + clang, + fetchFromGitHub, + buildGoModule, }: buildGoModule rec { pname = "dae"; @@ -21,17 +22,15 @@ buildGoModule rec { nativeBuildInputs = [ clang ]; - ldflags = [ - "-s" - "-w" - "-X github.com/daeuniverse/dae/cmd.Version=${version}" - "-X github.com/daeuniverse/dae/common/consts.MaxMatchSetLen_=64" - ]; + buildPhase = '' + runHook preBuild - preBuild = '' make CFLAGS="-D__REMOVE_BPF_PRINTK -fno-stack-protector -Wno-unused-command-line-argument" \ NOSTRIP=y \ - ebpf + VERSION=${version} \ + OUTPUT=$out/bin/dae + + runHook postBuild ''; # network required @@ -47,7 +46,10 @@ buildGoModule rec { description = "Linux high-performance transparent proxy solution based on eBPF"; homepage = "https://github.com/daeuniverse/dae"; license = licenses.agpl3Only; - maintainers = with maintainers; [ oluceps pokon548 ]; + maintainers = with maintainers; [ + oluceps + pokon548 + ]; platforms = platforms.linux; mainProgram = "dae"; }; diff --git a/pkgs/tools/networking/ddns-go/default.nix b/pkgs/tools/networking/ddns-go/default.nix index 9c5b96c90ac41..f42da08c74d99 100644 --- a/pkgs/tools/networking/ddns-go/default.nix +++ b/pkgs/tools/networking/ddns-go/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "ddns-go"; - version = "6.6.2"; + version = "6.6.3"; src = fetchFromGitHub { owner = "jeessy2"; repo = pname; rev = "v${version}"; - hash = "sha256-rl0J10HuZ7WBnOTylCW0MrNFEoKoBwUicJWy9vcQIew="; + hash = "sha256-8818/SMDsViNIHImvbjk92Fm+JbfzrESG9J5rTJ2H18="; }; - vendorHash = "sha256-dJXXGoTzgbmpDoAYKfkUgsmQILQQ+zbE14+BiaNEHSs="; + vendorHash = "sha256-N9qoJ0sfpIVasveYlfg2e3ZCL2mORhylanepazHCBWc="; ldflags = [ "-X main.version=${version}" diff --git a/pkgs/tools/networking/ghostunnel/default.nix b/pkgs/tools/networking/ghostunnel/default.nix index 85ffdefb74242..0de39a31bcb7f 100644 --- a/pkgs/tools/networking/ghostunnel/default.nix +++ b/pkgs/tools/networking/ghostunnel/default.nix @@ -7,13 +7,13 @@ buildGoModule rec { pname = "ghostunnel"; - version = "1.7.3"; + version = "1.8.0"; src = fetchFromGitHub { owner = "ghostunnel"; repo = "ghostunnel"; rev = "v${version}"; - hash = "sha256-6yGAXJOyXNj0xf+1vKxVcU6w3VMpSLh+6PC+yKzFbrs="; + hash = "sha256-TYicljKrKBWRKThJlMpMgmMBwesuGw4mC59Dm62PpKI="; }; vendorHash = null; diff --git a/pkgs/tools/networking/globalping-cli/default.nix b/pkgs/tools/networking/globalping-cli/default.nix index 25cf1a1e641da..693c98e16ec65 100644 --- a/pkgs/tools/networking/globalping-cli/default.nix +++ b/pkgs/tools/networking/globalping-cli/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "globalping-cli"; - version = "1.2.1"; + version = "1.3.0"; src = fetchFromGitHub { owner = "jsdelivr"; repo = pname; rev = "v${version}"; - hash = "sha256-9FMp3cGJr8RdySZvSflYa91uaIV5wVl6WmUDvbRkSFY="; + hash = "sha256-/W/S+oG/3gD/+8mOWy4oWv7TR3IGKZt4cz0vE4nIzM4="; }; - vendorHash = "sha256-3VqCgkyhPKk5iBkKOK2EajEKgEnCHOQjO59AKFafQHc="; + vendorHash = "sha256-V6DwV2KukFfFK0PK9MacoHH0sB5qNV315jn0T+4rhfA="; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/tools/networking/httping/default.nix b/pkgs/tools/networking/httping/default.nix deleted file mode 100644 index 1933dc41de0f1..0000000000000 --- a/pkgs/tools/networking/httping/default.nix +++ /dev/null @@ -1,63 +0,0 @@ -{ lib -, stdenv -, fetchFromGitHub -, fetchpatch -, fftw ? null -, gettext -, libintl -, ncurses -, openssl -}: - -stdenv.mkDerivation rec { - pname = "httping"; - version = "2.9"; - - src = fetchFromGitHub { - owner = "folkertvanheusden"; - repo = "HTTPing"; - rev = "v${version}"; - hash = "sha256-aExTXXtW03UKMuMjTMx1k/MUpcRMh1PdSPkDGH+Od70="; - }; - - patches = [ - # Pull upstream fix for missing <unistd.h> - # https://github.com/folkertvanheusden/HTTPing/pull/8 - (fetchpatch { - name = "add-unistd.patch"; - url = "https://github.com/folkertvanheusden/HTTPing/commit/aad3c275686344fe9a235faeac4ee3832f3aa8d5.patch"; - hash = "sha256-bz3AMQTSfSTwUyf9WbkAFWVmFo06ei+Qd55x+RRDREY="; - }) - ]; - - nativeBuildInputs = [ - gettext - ]; - - buildInputs = [ - fftw - libintl - ncurses - openssl - ]; - - makeFlags = [ - "DESTDIR=$(out)" - "PREFIX=" - ]; - - meta = with lib; { - homepage = "https://vanheusden.com/httping"; - description = "ping with HTTP requests"; - longDescription = '' - Give httping an url, and it'll show you how long it takes to connect, - send a request and retrieve the reply (only the headers). Be aware that - the transmission across the network also takes time! So it measures the - latency of the webserver + network. It supports IPv6. - ''; - license = licenses.agpl3Only; - maintainers = []; - platforms = platforms.linux ++ platforms.darwin; - mainProgram = "httping"; - }; -} diff --git a/pkgs/tools/networking/isync/default.nix b/pkgs/tools/networking/isync/default.nix index bfe968456a2dd..edf20a6e77c09 100644 --- a/pkgs/tools/networking/isync/default.nix +++ b/pkgs/tools/networking/isync/default.nix @@ -45,7 +45,7 @@ stdenv.mkDerivation rec { ''; license = licenses.gpl2Plus; platforms = platforms.unix; - maintainers = with maintainers; [ primeos lheckemann ]; + maintainers = with maintainers; [ primeos ]; mainProgram = "mbsync"; }; } diff --git a/pkgs/tools/networking/libreswan/default.nix b/pkgs/tools/networking/libreswan/default.nix index 07f35663752bc..7dac682407bd0 100644 --- a/pkgs/tools/networking/libreswan/default.nix +++ b/pkgs/tools/networking/libreswan/default.nix @@ -104,7 +104,7 @@ stdenv.mkDerivation rec { -i $out/bin/ipsec ''; - passthru.tests.libreswan = nixosTests.libreswan; + passthru.tests = { inherit (nixosTests) libreswan libreswan-nat; }; meta = with lib; { homepage = "https://libreswan.org"; diff --git a/pkgs/tools/networking/narrowlink/default.nix b/pkgs/tools/networking/narrowlink/default.nix index d56c207eeb5e8..142d6a680b704 100644 --- a/pkgs/tools/networking/narrowlink/default.nix +++ b/pkgs/tools/networking/narrowlink/default.nix @@ -9,16 +9,16 @@ rustPlatform.buildRustPackage rec { pname = "narrowlink"; - version = "0.2.5"; + version = "0.2.6"; src = fetchFromGitHub { owner = "narrowlink"; repo = "narrowlink"; rev = version; - hash = "sha256-Ro5SfcuKy0JqSwh2HbYisE9I4BTP4o7qjEA3fU3pAuw="; + hash = "sha256-O66eihqSxwvrUfJj+VMrs7Vfndz2LPKQEnH7BDljvUg="; }; - cargoHash = "sha256-XHbgwqvzfnpbu2h8rbI8XsL+og0gkjQzhHzME6crmZg="; + cargoHash = "sha256-LqPfgnN1J/OMAPsaBg9c5YSPbEDhOOOSujLthwIK79U="; nativeBuildInputs = [ rustPlatform.bindgenHook diff --git a/pkgs/tools/networking/opendrop/default.nix b/pkgs/tools/networking/opendrop/default.nix index ce43b96d43f9e..a45c8916f9f63 100644 --- a/pkgs/tools/networking/opendrop/default.nix +++ b/pkgs/tools/networking/opendrop/default.nix @@ -57,7 +57,7 @@ buildPythonApplication rec { homepage = "https://owlink.org/"; changelog = "https://github.com/seemoo-lab/opendrop/releases/tag/${src.rev}"; license = licenses.gpl3Only; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; mainProgram = "opendrop"; platforms = [ "x86_64-linux" ]; }; diff --git a/pkgs/tools/networking/openvpn/default.nix b/pkgs/tools/networking/openvpn/default.nix index 905b9b7c97d8f..03e663229b742 100644 --- a/pkgs/tools/networking/openvpn/default.nix +++ b/pkgs/tools/networking/openvpn/default.nix @@ -21,11 +21,11 @@ let in stdenv.mkDerivation (finalAttrs: { pname = "openvpn"; - version = "2.6.10"; + version = "2.6.11"; src = fetchurl { url = "https://swupdate.openvpn.net/community/releases/openvpn-${finalAttrs.version}.tar.gz"; - hash = "sha256-GZO7t7nttDBibqokVz+IH9PfZC9Cf8uCSxrtH8obzJs="; + hash = "sha256-1grfQT034R5uY1McrPJlWQZ1YEa07f/oihO54v7EDV4="; }; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/tools/networking/owl/default.nix b/pkgs/tools/networking/owl/default.nix index 45dcb39c4d774..703859b8b1a36 100644 --- a/pkgs/tools/networking/owl/default.nix +++ b/pkgs/tools/networking/owl/default.nix @@ -19,7 +19,7 @@ stdenv.mkDerivation rec { description = "Open Apple Wireless Direct Link (AWDL) implementation written in C"; homepage = "https://owlink.org/"; license = licenses.gpl3Only; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; platforms = [ "x86_64-linux" ]; mainProgram = "owl"; }; diff --git a/pkgs/tools/networking/rtptools/default.nix b/pkgs/tools/networking/rtptools/default.nix index 8214d0785f166..c7d0a991a9e14 100644 --- a/pkgs/tools/networking/rtptools/default.nix +++ b/pkgs/tools/networking/rtptools/default.nix @@ -9,7 +9,7 @@ stdenv.mkDerivation rec { meta = { description = "Number of small applications that can be used for processing RTP data"; homepage = "https://www.cs.columbia.edu/irt/software/rtptools/"; - maintainers = [ lib.maintainers.lheckemann ]; + maintainers = [ ]; platforms = lib.platforms.unix; license = lib.licenses.bsd3; }; diff --git a/pkgs/tools/networking/stevenblack-blocklist/default.nix b/pkgs/tools/networking/stevenblack-blocklist/default.nix index 0531a3d20b248..34f64cb5e4804 100644 --- a/pkgs/tools/networking/stevenblack-blocklist/default.nix +++ b/pkgs/tools/networking/stevenblack-blocklist/default.nix @@ -1,7 +1,7 @@ { lib, fetchFromGitHub }: let - version = "3.14.71"; + version = "3.14.79"; in fetchFromGitHub { name = "stevenblack-blocklist-${version}"; @@ -9,7 +9,7 @@ fetchFromGitHub { owner = "StevenBlack"; repo = "hosts"; rev = version; - hash = "sha256-33aDL+nJ+BOwOOSfiaAX3r8BdDM2rWCaeiz55nUXrd8="; + hash = "sha256-MfQGu+Y4/A0GKIu9d//U+yiP0fN/7cWhEo2dut4UvcE="; meta = with lib; { description = "Unified hosts file with base extensions"; @@ -18,6 +18,7 @@ fetchFromGitHub { maintainers = with maintainers; [ moni Guanran928 + frontear ]; }; } diff --git a/pkgs/tools/networking/xray/default.nix b/pkgs/tools/networking/xray/default.nix index e27931f00c0e3..8b196b5f31337 100644 --- a/pkgs/tools/networking/xray/default.nix +++ b/pkgs/tools/networking/xray/default.nix @@ -11,16 +11,16 @@ buildGoModule rec { pname = "xray"; - version = "1.8.13"; + version = "1.8.16"; src = fetchFromGitHub { owner = "XTLS"; repo = "Xray-core"; rev = "v${version}"; - hash = "sha256-+npmj8Cz3/XTabAXL+J02EmyvPwtwz9TKazd9z9emwI="; + hash = "sha256-IHa+7eZkDDK8ZH+WUMoD0F9eiDvD9yYtFrTswBA00O0="; }; - vendorHash = "sha256-55mNCD3p6Xy6S1w8WzJwxKttjEkEjJZcGTLQdWl1bQQ="; + vendorHash = "sha256-nMVMbZPIn/mBHgPqH026t1dgi6t/RT+jhT/KseRO1fE="; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/tools/package-management/libdnf/default.nix b/pkgs/tools/package-management/libdnf/default.nix index 79fc38eaef33d..dc5e95f7f3d98 100644 --- a/pkgs/tools/package-management/libdnf/default.nix +++ b/pkgs/tools/package-management/libdnf/default.nix @@ -24,7 +24,7 @@ stdenv.mkDerivation rec { pname = "libdnf"; - version = "0.73.1"; + version = "0.73.2"; outputs = [ "out" "dev" "py" ]; @@ -32,7 +32,7 @@ stdenv.mkDerivation rec { owner = "rpm-software-management"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-mZCrJ1fXqKE1sMYKWHLLQEPkdLwPwqJz+8n+DlNmxvM="; + hash = "sha256-tdAbkIb3BAhNKFbjIGHEdVNwh3E1sKFLP+L4MhifsQM="; }; nativeBuildInputs = [ diff --git a/pkgs/tools/package-management/lix/common.nix b/pkgs/tools/package-management/lix/common.nix index e0d504774235c..8c89cf9fefda6 100644 --- a/pkgs/tools/package-management/lix/common.nix +++ b/pkgs/tools/package-management/lix/common.nix @@ -11,6 +11,7 @@ inherit hash; }, docCargoHash ? null, + docCargoLock ? null, patches ? [ ], maintainers ? lib.teams.lix.members, }@args: @@ -65,6 +66,12 @@ assert (hash == null) -> (src != null); util-linuxMinimal, xz, nixosTests, + lix-doc ? callPackage ./doc { + inherit src; + version = "${version}${suffix}"; + cargoHash = docCargoHash; + cargoLock = docCargoLock; + }, enableDocumentation ? stdenv.hostPlatform == stdenv.buildPlatform, enableStatic ? stdenv.hostPlatform.isStatic, @@ -78,212 +85,205 @@ assert (hash == null) -> (src != null); stateDir, storeDir, }: -let - lix-doc = callPackage ./doc { - inherit src; - version = "${version}${suffix}"; - cargoHash = docCargoHash; - }; - self = stdenv.mkDerivation { - pname = "lix"; +assert lib.assertMsg (docCargoHash != null || docCargoLock != null) "Either `lix-doc`'s cargoHash using `docCargoHash` or `lix-doc`'s `cargoLock.lockFile` using `docCargoLock` must be set!"; +stdenv.mkDerivation { + pname = "lix"; - version = "${version}${suffix}"; - VERSION_SUFFIX = suffix; + version = "${version}${suffix}"; + VERSION_SUFFIX = suffix; - inherit src patches; + inherit src patches; - outputs = - [ - "out" - "dev" - ] - ++ lib.optionals enableDocumentation [ - "man" - "doc" - ]; + outputs = + [ + "out" + "dev" + ] + ++ lib.optionals enableDocumentation [ + "man" + "doc" + ]; - strictDeps = true; + strictDeps = true; - nativeBuildInputs = - [ - pkg-config - bison - flex - jq - meson - ninja - cmake - python3 - doxygen + nativeBuildInputs = + [ + pkg-config + bison + flex + jq + meson + ninja + cmake + python3 + doxygen - # Tests - git - mercurial - jq - lsof - ] - ++ lib.optionals (enableDocumentation) [ - (lib.getBin lowdown) - mdbook - mdbook-linkcheck - ] - ++ lib.optionals stdenv.isLinux [ util-linuxMinimal ]; + # Tests + git + mercurial + jq + lsof + ] + ++ lib.optionals (enableDocumentation) [ + (lib.getBin lowdown) + mdbook + mdbook-linkcheck + ] + ++ lib.optionals stdenv.isLinux [ util-linuxMinimal ]; - buildInputs = - [ - boost - brotli - bzip2 - curl - editline - libsodium - openssl - sqlite - xz - gtest - libarchive - lowdown - rapidcheck - toml11 - lix-doc - ] - ++ lib.optionals stdenv.isDarwin [ Security ] - ++ lib.optionals (stdenv.isx86_64) [ libcpuid ] - ++ lib.optionals withLibseccomp [ libseccomp ] - ++ lib.optionals withAWS [ aws-sdk-cpp ]; + buildInputs = + [ + boost + brotli + bzip2 + curl + editline + libsodium + openssl + sqlite + xz + gtest + libarchive + lowdown + rapidcheck + toml11 + lix-doc + ] + ++ lib.optionals stdenv.isDarwin [ Security ] + ++ lib.optionals (stdenv.isx86_64) [ libcpuid ] + ++ lib.optionals withLibseccomp [ libseccomp ] + ++ lib.optionals withAWS [ aws-sdk-cpp ]; - propagatedBuildInputs = [ - boehmgc - nlohmann_json - ]; + propagatedBuildInputs = [ + boehmgc + nlohmann_json + ]; - postPatch = '' - patchShebangs --build tests - ''; + postPatch = '' + patchShebangs --build tests + ''; - preConfigure = - # Copy libboost_context so we don't get all of Boost in our closure. - # https://github.com/NixOS/nixpkgs/issues/45462 - lib.optionalString (!enableStatic) '' - mkdir -p $out/lib - cp -pd ${boost}/lib/{libboost_context*,libboost_thread*,libboost_system*} $out/lib - rm -f $out/lib/*.a - ${lib.optionalString stdenv.isLinux '' - chmod u+w $out/lib/*.so.* - patchelf --set-rpath $out/lib:${stdenv.cc.cc.lib}/lib $out/lib/libboost_thread.so.* - ''} - ${lib.optionalString stdenv.hostPlatform.isDarwin '' - for LIB in $out/lib/*.dylib; do - chmod u+w $LIB - install_name_tool -id $LIB $LIB - install_name_tool -delete_rpath ${boost}/lib/ $LIB || true - done - install_name_tool -change ${boost}/lib/libboost_system.dylib $out/lib/libboost_system.dylib $out/lib/libboost_thread.dylib - ''} - ''; + preConfigure = + # Copy libboost_context so we don't get all of Boost in our closure. + # https://github.com/NixOS/nixpkgs/issues/45462 + lib.optionalString (!enableStatic) '' + mkdir -p $out/lib + cp -pd ${boost}/lib/{libboost_context*,libboost_thread*,libboost_system*} $out/lib + rm -f $out/lib/*.a + ${lib.optionalString stdenv.isLinux '' + chmod u+w $out/lib/*.so.* + patchelf --set-rpath $out/lib:${stdenv.cc.cc.lib}/lib $out/lib/libboost_thread.so.* + ''} + ${lib.optionalString stdenv.hostPlatform.isDarwin '' + for LIB in $out/lib/*.dylib; do + chmod u+w $LIB + install_name_tool -id $LIB $LIB + install_name_tool -delete_rpath ${boost}/lib/ $LIB || true + done + install_name_tool -change ${boost}/lib/libboost_system.dylib $out/lib/libboost_system.dylib $out/lib/libboost_thread.dylib + ''} + ''; - mesonBuildType = "release"; - mesonFlags = - [ - # LTO optimization - (lib.mesonBool "b_lto" (!stdenv.isDarwin)) - (lib.mesonEnable "gc" true) - (lib.mesonBool "enable-tests" true) - (lib.mesonBool "enable-docs" enableDocumentation) - (lib.mesonBool "enable-embedded-sandbox-shell" (stdenv.isLinux && stdenv.hostPlatform.isStatic)) - (lib.mesonEnable "seccomp-sandboxing" withLibseccomp) + mesonBuildType = "release"; + mesonFlags = + [ + # LTO optimization + (lib.mesonBool "b_lto" (!stdenv.isDarwin)) + (lib.mesonEnable "gc" true) + (lib.mesonBool "enable-tests" true) + (lib.mesonBool "enable-docs" enableDocumentation) + (lib.mesonBool "enable-embedded-sandbox-shell" (stdenv.isLinux && stdenv.hostPlatform.isStatic)) + (lib.mesonEnable "seccomp-sandboxing" withLibseccomp) - (lib.mesonOption "store-dir" storeDir) - (lib.mesonOption "state-dir" stateDir) - (lib.mesonOption "sysconfdir" confDir) - ] - ++ lib.optionals stdenv.isLinux [ - (lib.mesonOption "sandbox-shell" "${busybox-sandbox-shell}/bin/busybox") - ]; + (lib.mesonOption "store-dir" storeDir) + (lib.mesonOption "state-dir" stateDir) + (lib.mesonOption "sysconfdir" confDir) + ] + ++ lib.optionals stdenv.isLinux [ + (lib.mesonOption "sandbox-shell" "${busybox-sandbox-shell}/bin/busybox") + ]; - # Needed for Meson to find Boost. - # https://github.com/NixOS/nixpkgs/issues/86131. - env = { - BOOST_INCLUDEDIR = "${lib.getDev boost}/include"; - BOOST_LIBRARYDIR = "${lib.getLib boost}/lib"; - }; + # Needed for Meson to find Boost. + # https://github.com/NixOS/nixpkgs/issues/86131. + env = { + BOOST_INCLUDEDIR = "${lib.getDev boost}/include"; + BOOST_LIBRARYDIR = "${lib.getLib boost}/lib"; + }; - postInstall = - '' - mkdir -p $doc/nix-support - echo "doc manual $doc/share/doc/nix/manual" >> $doc/nix-support/hydra-build-products - '' - + lib.optionalString stdenv.hostPlatform.isStatic '' - mkdir -p $out/nix-support - echo "file binary-dist $out/bin/nix" >> $out/nix-support/hydra-build-products - '' - + lib.optionalString stdenv.isDarwin '' - for lib in libnixutil.dylib libnixexpr.dylib; do - install_name_tool \ - -change "${lib.getLib boost}/lib/libboost_context.dylib" \ - "$out/lib/libboost_context.dylib" \ - "$out/lib/$lib" - done - ''; + postInstall = + '' + mkdir -p $doc/nix-support + echo "doc manual $doc/share/doc/nix/manual" >> $doc/nix-support/hydra-build-products + '' + + lib.optionalString stdenv.hostPlatform.isStatic '' + mkdir -p $out/nix-support + echo "file binary-dist $out/bin/nix" >> $out/nix-support/hydra-build-products + '' + + lib.optionalString stdenv.isDarwin '' + for lib in liblixutil.dylib liblixexpr.dylib; do + install_name_tool \ + -change "${lib.getLib boost}/lib/libboost_context.dylib" \ + "$out/lib/libboost_context.dylib" \ + "$out/lib/$lib" + done + ''; - doCheck = true; - mesonCheckFlags = [ "--suite=check" ]; - checkInputs = [ - gtest - rapidcheck - ]; + doCheck = true; + mesonCheckFlags = [ "--suite=check" ]; + checkInputs = [ + gtest + rapidcheck + ]; - doInstallCheck = true; - mesonInstallCheckFlags = [ "--suite=installcheck" ]; + doInstallCheck = true; + mesonInstallCheckFlags = [ "--suite=installcheck" ]; - preInstallCheck = lib.optionalString stdenv.hostPlatform.isDarwin '' - # socket path becomes too long otherwise - export TMPDIR=$NIX_BUILD_TOP - # Prevent crashes in libcurl due to invoking Objective-C `+initialize` methods after `fork`. - # See http://sealiesoftware.com/blog/archive/2017/6/5/Objective-C_and_fork_in_macOS_1013.html. - export OBJC_DISABLE_INITIALIZE_FORK_SAFETY=YES - ''; + preInstallCheck = lib.optionalString stdenv.hostPlatform.isDarwin '' + # socket path becomes too long otherwise + export TMPDIR=$NIX_BUILD_TOP + # Prevent crashes in libcurl due to invoking Objective-C `+initialize` methods after `fork`. + # See http://sealiesoftware.com/blog/archive/2017/6/5/Objective-C_and_fork_in_macOS_1013.html. + export OBJC_DISABLE_INITIALIZE_FORK_SAFETY=YES + ''; - installCheckPhase = '' - runHook preInstallCheck - flagsArray=($mesonInstallCheckFlags "''${mesonInstallCheckFlagsArray[@]}") - meson test --no-rebuild "''${flagsArray[@]}" - runHook postInstallCheck - ''; - # strictoverflow is disabled because we trap on signed overflow instead - hardeningDisable = [ "strictoverflow" ] ++ lib.optional stdenv.hostPlatform.isStatic "pie"; - # hardeningEnable = lib.optionals (!stdenv.isDarwin) [ "pie" ]; - # hardeningDisable = lib.optional stdenv.hostPlatform.isMusl "fortify"; - separateDebugInfo = stdenv.isLinux && !enableStatic; - enableParallelBuilding = true; + installCheckPhase = '' + runHook preInstallCheck + flagsArray=($mesonInstallCheckFlags "''${mesonInstallCheckFlagsArray[@]}") + meson test --no-rebuild "''${flagsArray[@]}" + runHook postInstallCheck + ''; + # strictoverflow is disabled because we trap on signed overflow instead + hardeningDisable = [ "strictoverflow" ] ++ lib.optional stdenv.hostPlatform.isStatic "pie"; + # hardeningEnable = lib.optionals (!stdenv.isDarwin) [ "pie" ]; + # hardeningDisable = lib.optional stdenv.hostPlatform.isMusl "fortify"; + separateDebugInfo = stdenv.isLinux && !enableStatic; + enableParallelBuilding = true; - passthru = { - inherit aws-sdk-cpp boehmgc; - tests = { - misc = nixosTests.nix-misc.lix; - }; + passthru = { + inherit aws-sdk-cpp boehmgc; + tests = { + misc = nixosTests.nix-misc.lix; }; + }; - # point 'nix edit' and ofborg at the file that defines the attribute, - # not this common file. - pos = builtins.unsafeGetAttrPos "version" args; - meta = with lib; { - description = "Powerful package manager that makes package management reliable and reproducible"; - longDescription = '' - Lix (a fork of Nix) is a powerful package manager for Linux and other Unix systems that - makes package management reliable and reproducible. It provides atomic - upgrades and rollbacks, side-by-side installation of multiple versions of - a package, multi-user package management and easy setup of build - environments. - ''; - homepage = "https://lix.systems"; - license = licenses.lgpl21Plus; - inherit maintainers; - platforms = platforms.unix; - outputsToInstall = [ "out" ] ++ optional enableDocumentation "man"; - mainProgram = "nix"; - broken = enableStatic; - }; + # point 'nix edit' and ofborg at the file that defines the attribute, + # not this common file. + pos = builtins.unsafeGetAttrPos "version" args; + meta = with lib; { + description = "Powerful package manager that makes package management reliable and reproducible"; + longDescription = '' + Lix (a fork of Nix) is a powerful package manager for Linux and other Unix systems that + makes package management reliable and reproducible. It provides atomic + upgrades and rollbacks, side-by-side installation of multiple versions of + a package, multi-user package management and easy setup of build + environments. + ''; + homepage = "https://lix.systems"; + license = licenses.lgpl21Plus; + inherit maintainers; + platforms = platforms.unix; + outputsToInstall = [ "out" ] ++ optional enableDocumentation "man"; + mainProgram = "nix"; + broken = enableStatic; }; -in -self +} diff --git a/pkgs/tools/package-management/lix/default.nix b/pkgs/tools/package-management/lix/default.nix index 9a03e64f8b8fc..c262bbac48c26 100644 --- a/pkgs/tools/package-management/lix/default.nix +++ b/pkgs/tools/package-management/lix/default.nix @@ -47,11 +47,13 @@ let }; in lib.makeExtensible (self: ({ + buildLix = common; + lix_2_90 = ( common { - version = "2.90-beta.1"; - hash = "sha256-REWlo2RYHfJkxnmZTEJu3Cd/2VM+wjjpPy7Xi4BdDTQ="; - docCargoHash = "sha256-oH248kR4Of0MhcY2DYxNX0A+/XJ3L+UuIpBKn3sJt54="; + version = "2.90.0-rc1"; + hash = "sha256-WY7BGnu5PnbK4O8cKKv9kvxwzZIGbIQUQLGPHFXitI0="; + docCargoHash = "sha256-V/MEC2aRlVrt/IKozyYZvZTXENrtDS/wsV08/ao4TCw="; } ); diff --git a/pkgs/tools/package-management/lix/doc/default.nix b/pkgs/tools/package-management/lix/doc/default.nix index a3c1d7d9ccc5a..b19f3bd2a170d 100644 --- a/pkgs/tools/package-management/lix/doc/default.nix +++ b/pkgs/tools/package-management/lix/doc/default.nix @@ -2,11 +2,12 @@ src, rustPlatform, version, - cargoHash, + cargoHash ? null, + cargoLock ? null }: rustPlatform.buildRustPackage { pname = "lix-doc"; - sourceRoot = "${src.name}/lix-doc"; - inherit version src cargoHash; + sourceRoot = "${src.name or src}/lix-doc"; + inherit version src cargoHash cargoLock; } diff --git a/pkgs/tools/package-management/nix-top/default.nix b/pkgs/tools/package-management/nix-top/default.nix deleted file mode 100644 index d9dcc2d64ec68..0000000000000 --- a/pkgs/tools/package-management/nix-top/default.nix +++ /dev/null @@ -1,53 +0,0 @@ -{ stdenv -, lib -, fetchFromGitHub -, ruby -, makeWrapper -, getent # /etc/passwd -, ncurses # tput -, binutils-unwrapped # strings -, coreutils -, findutils -}: - -# No gems used, so mkDerivation is fine. -let - additionalPath = lib.makeBinPath [ getent ncurses binutils-unwrapped coreutils findutils ]; -in -stdenv.mkDerivation rec { - pname = "nix-top"; - version = "0.3.0"; - - src = fetchFromGitHub { - owner = "samueldr"; - repo = "nix-top"; - rev = "v${version}"; - sha256 = "sha256-w/TKzbZmMt4CX2KnLwPvR1ydp5NNlp9nNx78jJvhp54="; - }; - - nativeBuildInputs = [ - makeWrapper - ]; - - buildInputs = [ - ruby - ]; - - installPhase = '' - mkdir -p $out/libexec/nix-top - install -D -m755 ./nix-top $out/bin/nix-top - wrapProgram $out/bin/nix-top \ - --prefix PATH : "$out/libexec/nix-top:${additionalPath}" - '' + lib.optionalString stdenv.isDarwin '' - ln -s /bin/stty $out/libexec/nix-top - ''; - - meta = with lib; { - description = "Tracks what nix is building"; - homepage = "https://github.com/samueldr/nix-top"; - license = licenses.mit; - maintainers = with maintainers; [ samueldr ]; - platforms = platforms.linux ++ platforms.darwin ++ platforms.freebsd; - mainProgram = "nix-top"; - }; -} diff --git a/pkgs/tools/package-management/nix-universal-prefetch/default.nix b/pkgs/tools/package-management/nix-universal-prefetch/default.nix deleted file mode 100644 index be31ca34ad603..0000000000000 --- a/pkgs/tools/package-management/nix-universal-prefetch/default.nix +++ /dev/null @@ -1,33 +0,0 @@ -{ lib, stdenv -, fetchFromGitHub -, ruby -}: - -# No gems used, so mkDerivation is fine. -stdenv.mkDerivation rec { - pname = "nix-universal-prefetch"; - version = "0.4.0"; - - src = fetchFromGitHub { - owner = "samueldr"; - repo = "nix-universal-prefetch"; - rev = "v${version}"; - sha256 = "sha256-HGn4qHWqpUwlS3yQrD3j5oH0yOlphsoSPD2vkyyRv+0="; - }; - - installPhase = '' - mkdir -pv $out/bin - cp nix-universal-prefetch $out/bin/nix-universal-prefetch - substituteInPlace "$out/bin/nix-universal-prefetch" \ - --replace "/usr/bin/env nix-shell" "${ruby}/bin/ruby" - ''; - - meta = with lib; { - description = "Uses nixpkgs fetchers to figure out hashes"; - homepage = "https://github.com/samueldr/nix-universal-prefetch"; - license = licenses.mit; - maintainers = with maintainers; [ samueldr ]; - platforms = platforms.linux ++ platforms.darwin; - mainProgram = "nix-universal-prefetch"; - }; -} diff --git a/pkgs/tools/package-management/nix/default.nix b/pkgs/tools/package-management/nix/default.nix index 5f2a9dadfd6b2..677dcf3aa1996 100644 --- a/pkgs/tools/package-management/nix/default.nix +++ b/pkgs/tools/package-management/nix/default.nix @@ -139,7 +139,7 @@ in lib.makeExtensible (self: ({ patch-monitorfdhup ]; self_attribute_name = "nix_2_3"; - maintainers = with lib.maintainers; [ flokli raitobezarius ]; + maintainers = with lib.maintainers; [ flokli ]; }).override { boehmgc = boehmgc-nix_2_3; }).overrideAttrs { # https://github.com/NixOS/nix/issues/10222 # spurious test/add.sh failures diff --git a/pkgs/tools/security/buttercup-desktop/default.nix b/pkgs/tools/security/buttercup-desktop/default.nix index cbe5bbe1f8d0e..1464d67dbc3ed 100644 --- a/pkgs/tools/security/buttercup-desktop/default.nix +++ b/pkgs/tools/security/buttercup-desktop/default.nix @@ -26,7 +26,7 @@ in appimageTools.wrapType2 { mainProgram = "buttercup-desktop"; homepage = "https://buttercup.pw"; license = licenses.gpl3Only; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; platforms = [ "x86_64-linux" ]; }; } diff --git a/pkgs/tools/security/chainsaw/default.nix b/pkgs/tools/security/chainsaw/default.nix index 0ecd5654cecae..fc1e773ce9aa2 100644 --- a/pkgs/tools/security/chainsaw/default.nix +++ b/pkgs/tools/security/chainsaw/default.nix @@ -8,16 +8,16 @@ rustPlatform.buildRustPackage rec { pname = "chainsaw"; - version = "2.9.0"; + version = "2.9.1"; src = fetchFromGitHub { owner = "WithSecureLabs"; repo = "chainsaw"; rev = "refs/tags/v${version}"; - hash = "sha256-ErDIfLhzCiFm3dZzr6ThjYCplfDKbALAqcu8c0gREH4="; + hash = "sha256-9UmyHf2aH6ODGEbsDBBD8pLRkRtOpc9HGKp9UV7mk0o="; }; - cargoHash = "sha256-IS2gQ6STrS+Msa36I+eM1RPGntX+DbsrKZPVZ1q9eo4="; + cargoHash = "sha256-f4EDtRFjRU62Nuzaq5EbL+/sCKyMMgSOu6MaFsuAFec="; buildInputs = lib.optionals stdenv.isDarwin [ darwin.apple_sdk.frameworks.CoreFoundation ]; diff --git a/pkgs/tools/security/cnquery/default.nix b/pkgs/tools/security/cnquery/default.nix index 22bb67677b0a3..cb66250ce7c6d 100644 --- a/pkgs/tools/security/cnquery/default.nix +++ b/pkgs/tools/security/cnquery/default.nix @@ -6,18 +6,18 @@ buildGoModule rec { pname = "cnquery"; - version = "11.8.0"; + version = "11.9.1"; src = fetchFromGitHub { owner = "mondoohq"; repo = "cnquery"; rev = "refs/tags/v${version}"; - hash = "sha256-TlDhfz7nS4zUalYlcvlc1pqytQI24rYCR6mayKX0X0M="; + hash = "sha256-EuYkjVaZmV2/DxrKgrfZraMZs5eVZRbNhCVvRtCoAK8="; }; subPackages = [ "apps/cnquery" ]; - vendorHash = "sha256-9oOXiBvCNRV/spusFgG5f29I7CI5fy872NsAezOgs6c="; + vendorHash = "sha256-VuJlc1qQSGu+9G3PkoE+Qz6UOv524xZPv+lYzK1Y9VY="; ldflags = [ "-w" diff --git a/pkgs/tools/security/cnspec/default.nix b/pkgs/tools/security/cnspec/default.nix index 2cd981a04bcf3..e3c112127143d 100644 --- a/pkgs/tools/security/cnspec/default.nix +++ b/pkgs/tools/security/cnspec/default.nix @@ -6,18 +6,18 @@ buildGoModule rec { pname = "cnspec"; - version = "11.8.0"; + version = "11.9.1"; src = fetchFromGitHub { owner = "mondoohq"; repo = "cnspec"; rev = "refs/tags/v${version}"; - hash = "sha256-gRmOHDwhOV2dpDdBS+SpyLBq2deL0mVwwgEod4a8BCM="; + hash = "sha256-8i2oNeFxpxhFxFlJR3ib0M1W9NNtqgGjlnKsqzLkf68="; }; proxyVendor = true; - vendorHash = "sha256-P0HRV7jRF8QZxruoQv2V6x/9v2rmZ3Xe5zZzZ3wj9x0="; + vendorHash = "sha256-va23lTCCL/4EpTkBPH+rqZj4f+O4vAg2/nXGMEDNGXU="; subPackages = [ "apps/cnspec" ]; diff --git a/pkgs/tools/security/graphw00f/default.nix b/pkgs/tools/security/graphw00f/default.nix index 711b2f5b21163..da0bd6b2a3ad2 100644 --- a/pkgs/tools/security/graphw00f/default.nix +++ b/pkgs/tools/security/graphw00f/default.nix @@ -5,14 +5,14 @@ python3.pkgs.buildPythonApplication rec { pname = "graphw00f"; - version = "1.1.16"; + version = "1.1.17"; format = "other"; src = fetchFromGitHub { owner = "dolevf"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-amyW+k6eXc4pyRLgrEXfOmMtReZvS8zDDBy+FSY6wHA="; + hash = "sha256-VeTFwn4PANGoW2Cb/IJ1KJb4YkjjDpaU7DLv0YwRwDU="; }; propagatedBuildInputs = with python3.pkgs; [ diff --git a/pkgs/tools/security/john/default.nix b/pkgs/tools/security/john/default.nix index 745b027a057e3..b06e0f3ec64ff 100644 --- a/pkgs/tools/security/john/default.nix +++ b/pkgs/tools/security/john/default.nix @@ -1,32 +1,17 @@ { lib, stdenv, fetchFromGitHub, openssl, nss, nspr, libkrb5, gmp, zlib, libpcap, re2 -, gcc, python3Packages, perl, perlPackages, makeWrapper, fetchpatch -}: +, gcc, python3Packages, perl, perlPackages, makeWrapper, }: stdenv.mkDerivation rec { pname = "john"; - version = "1.9.0-jumbo-1"; + version = "rolling-2404"; src = fetchFromGitHub { owner = "openwall"; - repo = pname; - rev = "1.9.0-Jumbo-1"; - sha256 = "sha256-O1iPh5QTMjZ78sKvGbvSpaHFbBuVc1z49UKTbMa24Rs="; + repo = "john"; + rev = "f9fedd238b0b1d69181c1fef033b85c787e96e57"; + hash = "sha256-zvoN+8Sx6qpVg2JeRLOIH1ehfl3tFTv7r5wQZ44Qsbc="; }; - patches = [ - (fetchpatch { - name = "fix-gcc-11-struct-allignment-incompatibility.patch"; - url = "https://github.com/openwall/john/commit/154ee1156d62dd207aff0052b04c61796a1fde3b.patch"; - sha256 = "sha256-3rfS2tu/TF+KW2MQiR+bh4w/FVECciTooDQNTHNw31A="; - }) - (fetchpatch { - name = "improve-apple-clang-pseudo-intrinsics-portability.patch"; - url = "https://github.com/openwall/john/commit/c9825e688d1fb9fdd8942ceb0a6b4457b0f9f9b4.patch"; - excludes = [ "doc/*" ]; - sha256 = "sha256-hgoiz7IgR4f66fMP7bV1F8knJttY8g2Hxyk3QfkTu+g="; - }) - ]; - postPatch = '' sed -ri -e ' s!^(#define\s+CFG_[A-Z]+_NAME\s+).*/!\1"'"$out"'/etc/john/! @@ -85,7 +70,7 @@ stdenv.mkDerivation rec { description = "John the Ripper password cracker"; license = licenses.gpl2Plus; homepage = "https://github.com/openwall/john/"; - maintainers = with maintainers; [ offline matthewbauer ]; + maintainers = with maintainers; [ offline matthewbauer cherrykitten ]; platforms = platforms.unix; }; } diff --git a/pkgs/tools/security/metasploit/Gemfile b/pkgs/tools/security/metasploit/Gemfile index 95bd1b8435df6..55597617ab4d7 100644 --- a/pkgs/tools/security/metasploit/Gemfile +++ b/pkgs/tools/security/metasploit/Gemfile @@ -1,4 +1,4 @@ # frozen_string_literal: true source "https://rubygems.org" -gem "metasploit-framework", git: "https://github.com/rapid7/metasploit-framework", ref: "refs/tags/6.4.13" +gem "metasploit-framework", git: "https://github.com/rapid7/metasploit-framework", ref: "refs/tags/6.4.14" diff --git a/pkgs/tools/security/metasploit/Gemfile.lock b/pkgs/tools/security/metasploit/Gemfile.lock index 864358152c6d8..877afc8a4f9d0 100644 --- a/pkgs/tools/security/metasploit/Gemfile.lock +++ b/pkgs/tools/security/metasploit/Gemfile.lock @@ -1,9 +1,9 @@ GIT remote: https://github.com/rapid7/metasploit-framework - revision: 0dae49af4bc85231052e15fc97f8bfbf9ec56cf3 - ref: refs/tags/6.4.13 + revision: 685168ecf3266361a8e7836b2a7889751b7d20b8 + ref: refs/tags/6.4.14 specs: - metasploit-framework (6.4.13) + metasploit-framework (6.4.14) aarch64 abbrev actionpack (~> 7.0.0) diff --git a/pkgs/tools/security/metasploit/default.nix b/pkgs/tools/security/metasploit/default.nix index b7144716ecf4f..e5844a655017f 100644 --- a/pkgs/tools/security/metasploit/default.nix +++ b/pkgs/tools/security/metasploit/default.nix @@ -15,13 +15,13 @@ let }; in stdenv.mkDerivation rec { pname = "metasploit-framework"; - version = "6.4.13"; + version = "6.4.14"; src = fetchFromGitHub { owner = "rapid7"; repo = "metasploit-framework"; rev = "refs/tags/${version}"; - hash = "sha256-9Qo+6FAkrzkXpaHPa6u3BgGH8yKDCKo1TtS4xO12Kew="; + hash = "sha256-aUxHCeRBlE0CQuroxge9A/O1LA9DfQJwuwWZsPUKz1A="; }; nativeBuildInputs = [ diff --git a/pkgs/tools/security/metasploit/gemset.nix b/pkgs/tools/security/metasploit/gemset.nix index 5edc7bb331356..ee76850346098 100644 --- a/pkgs/tools/security/metasploit/gemset.nix +++ b/pkgs/tools/security/metasploit/gemset.nix @@ -724,12 +724,12 @@ platforms = []; source = { fetchSubmodules = false; - rev = "0dae49af4bc85231052e15fc97f8bfbf9ec56cf3"; - sha256 = "1v19fvnw9f6l9qssl2434brqf086nymnpkx1llbkkbr4a3l3w2pm"; + rev = "685168ecf3266361a8e7836b2a7889751b7d20b8"; + sha256 = "0l6g1bsv1685pdq04za31wnbbwq3pl3wds7a8814v521wh4lfk39"; type = "git"; url = "https://github.com/rapid7/metasploit-framework"; }; - version = "6.4.13"; + version = "6.4.14"; }; metasploit-model = { groups = ["default"]; diff --git a/pkgs/tools/security/mitm6/default.nix b/pkgs/tools/security/mitm6/default.nix index f3626355fbb1c..518b61fd8d4b1 100644 --- a/pkgs/tools/security/mitm6/default.nix +++ b/pkgs/tools/security/mitm6/default.nix @@ -32,6 +32,6 @@ python3.pkgs.buildPythonApplication rec { mainProgram = "mitm6"; homepage = "https://github.com/dirkjanm/mitm6"; license = lib.licenses.gpl2Only; - maintainers = with lib.maintainers; [ arcayr ]; + maintainers = with lib.maintainers; [ ]; }; } diff --git a/pkgs/tools/security/munge/default.nix b/pkgs/tools/security/munge/default.nix index 01137be20460d..f21a9e17add38 100644 --- a/pkgs/tools/security/munge/default.nix +++ b/pkgs/tools/security/munge/default.nix @@ -1,42 +1,78 @@ -{ lib, stdenv, fetchFromGitHub, autoreconfHook, libgcrypt, zlib, bzip2 }: +{ + lib, + stdenv, + fetchFromGitHub, + autoreconfHook, + libgcrypt, + zlib, + bzip2, +}: -stdenv.mkDerivation rec { +stdenv.mkDerivation (finalAttrs: { pname = "munge"; version = "0.5.16"; src = fetchFromGitHub { owner = "dun"; repo = "munge"; - rev = "${pname}-${version}"; + rev = "munge-${finalAttrs.version}"; sha256 = "sha256-fv42RMUAP8Os33/iHXr70i5Pt2JWZK71DN5vFI3q7Ak="; }; - strictDeps = true; nativeBuildInputs = [ autoreconfHook libgcrypt # provides libgcrypt.m4 ]; - buildInputs = [ libgcrypt zlib bzip2 ]; - preAutoreconf = '' - # Remove the install-data stuff, since it tries to write to /var - substituteInPlace src/Makefile.am --replace "etc \\" "\\" - ''; + buildInputs = [ + libgcrypt + zlib + bzip2 + ]; + + strictDeps = true; configureFlags = [ + # Load data from proper global paths "--localstatedir=/var" - "--with-libgcrypt-prefix=${libgcrypt.dev}" + "--sysconfdir=/etc" + "--runstatedir=/run" + "--with-sysconfigdir=/etc/default" + + # Install data to proper directories + "--with-pkgconfigdir=${placeholder "out"}/lib/pkgconfig" + "--with-systemdunitdir=${placeholder "out"}/lib/systemd/system" + + # Cross-compilation hacks + "--with-libgcrypt-prefix=${lib.getDev libgcrypt}" # workaround for cross compilation: https://github.com/dun/munge/issues/103 "ac_cv_file__dev_spx=no" "x_ac_cv_check_fifo_recvfd=no" ]; + installFlags = [ + "localstatedir=${placeholder "out"}/var" + "runstatedir=${placeholder "out"}/run" + "sysconfdir=${placeholder "out"}/etc" + "sysconfigdir=${placeholder "out"}/etc/default" + ]; + + postInstall = '' + # rmdir will notify us if anything new is installed to the directories. + rmdir "$out"/{var{/{lib,log}{/munge,},},etc/munge} + ''; + meta = with lib; { description = '' An authentication service for creating and validating credentials ''; - license = licenses.lgpl3; + license = [ + # MUNGE + licenses.gpl3Plus + # libmunge + licenses.lgpl3Plus + ]; platforms = platforms.unix; maintainers = [ maintainers.rickynils ]; }; -} +}) diff --git a/pkgs/tools/security/pass2csv/default.nix b/pkgs/tools/security/pass2csv/default.nix index 7071ad9fb219d..5a255d201f0cd 100644 --- a/pkgs/tools/security/pass2csv/default.nix +++ b/pkgs/tools/security/pass2csv/default.nix @@ -31,6 +31,6 @@ buildPythonApplication rec { mainProgram = "pass2csv"; homepage = "https://github.com/reinefjord/pass2csv"; license = licenses.mit; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; }; } diff --git a/pkgs/tools/security/schleuder/default.nix b/pkgs/tools/security/schleuder/default.nix index 95b54d3de724c..cce88366a372b 100644 --- a/pkgs/tools/security/schleuder/default.nix +++ b/pkgs/tools/security/schleuder/default.nix @@ -34,6 +34,6 @@ bundlerApp { homepage = "https://schleuder.org"; changelog = "https://0xacab.org/schleuder/schleuder/blob/main/CHANGELOG.md"; license = licenses.gpl3Plus; - maintainers = with maintainers; [ hexa lheckemann ]; + maintainers = with maintainers; [ hexa ]; }; } diff --git a/pkgs/tools/security/step-ca/default.nix b/pkgs/tools/security/step-ca/default.nix index 7c8f44918506b..7fb581daf3e17 100644 --- a/pkgs/tools/security/step-ca/default.nix +++ b/pkgs/tools/security/step-ca/default.nix @@ -68,7 +68,6 @@ buildGoModule rec { license = licenses.asl20; maintainers = with maintainers; [ cmcdragonkai - mohe2015 techknowlogick ]; }; diff --git a/pkgs/tools/security/trufflehog/default.nix b/pkgs/tools/security/trufflehog/default.nix index e94cfbd846eaf..4bbd65c09b65c 100644 --- a/pkgs/tools/security/trufflehog/default.nix +++ b/pkgs/tools/security/trufflehog/default.nix @@ -8,16 +8,16 @@ buildGoModule rec { pname = "trufflehog"; - version = "3.78.1"; + version = "3.78.2"; src = fetchFromGitHub { owner = "trufflesecurity"; repo = "trufflehog"; rev = "refs/tags/v${version}"; - hash = "sha256-Gek42O48RDkygeq+9oaV2f9UephOjxrevC6uQeAn24s="; + hash = "sha256-s+8l203ntPsp54yZpEX2wz8Dt/p3rokfu6KI8LSwpko="; }; - vendorHash = "sha256-KSIHJe83F2PBWBYe/aoWJrqzGvDwZhrrCvJ2GVBnmfo="; + vendorHash = "sha256-0YNvqJlSF6TIGSbQrAu47G2oXPY9+2wiZbDP94oAaVA="; proxyVendor = true; diff --git a/pkgs/tools/security/vault/default.nix b/pkgs/tools/security/vault/default.nix index d70f309376a34..6efce59221d89 100644 --- a/pkgs/tools/security/vault/default.nix +++ b/pkgs/tools/security/vault/default.nix @@ -6,16 +6,16 @@ buildGoModule rec { pname = "vault"; - version = "1.16.2"; + version = "1.17.0"; src = fetchFromGitHub { owner = "hashicorp"; repo = "vault"; rev = "v${version}"; - hash = "sha256-OFYUM6NFNwpx356y+G1yAOOgpinK8qOkLBtUMFPFXK8="; + hash = "sha256-jnX3sJJIe62y5p5w7xs5IQ5xE/9aWzM02H2x/p7E9gc="; }; - vendorHash = "sha256-pWteRqBGKHcqjN3wSxWuoy0YK7w2Zaz2BsiveG7UkVE="; + vendorHash = "sha256-r2tDPAPM8wPWRaArsjf5YcERyy3pwmIM4Wx2HSUdFEg="; proxyVendor = true; diff --git a/pkgs/tools/security/whatweb/default.nix b/pkgs/tools/security/whatweb/default.nix index fbe78834c8268..9adf3cde8e478 100644 --- a/pkgs/tools/security/whatweb/default.nix +++ b/pkgs/tools/security/whatweb/default.nix @@ -45,7 +45,7 @@ in stdenv.mkDerivation rec { mainProgram = "whatweb"; homepage = "https://github.com/urbanadventurer/whatweb"; license = licenses.gpl2Only; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; platforms = platforms.unix; }; } diff --git a/pkgs/tools/security/witness/default.nix b/pkgs/tools/security/witness/default.nix index 75cdc9e1ce61b..1a24742e8a364 100644 --- a/pkgs/tools/security/witness/default.nix +++ b/pkgs/tools/security/witness/default.nix @@ -10,15 +10,15 @@ buildGoModule rec { pname = "witness"; - version = "0.5.2"; + version = "0.6.0"; src = fetchFromGitHub { owner = "in-toto"; repo = "witness"; rev = "v${version}"; - sha256 = "sha256-3up10DdW0nMPAghEVlnOrFUbjQd1AuNmraBDjBPdjm8="; + sha256 = "sha256-ao9mxN5cMGopCRXUkJRTNJemizzibdw0Q+oAhKjUyHA="; }; - vendorHash = "sha256-sYWcmQloeZlwuUz0SkucpVGOqkoOpgnsHDsuWyWTBPQ="; + vendorHash = "sha256-pDMvtSavifWfxJqfiOef0CyT8KtU8BUjEFwReElkEeM="; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/tools/system/automatic-timezoned/default.nix b/pkgs/tools/system/automatic-timezoned/default.nix index c0a5e76d06775..291da3c786ead 100644 --- a/pkgs/tools/system/automatic-timezoned/default.nix +++ b/pkgs/tools/system/automatic-timezoned/default.nix @@ -5,16 +5,16 @@ rustPlatform.buildRustPackage rec { pname = "automatic-timezoned"; - version = "2.0.16"; + version = "2.0.17"; src = fetchFromGitHub { owner = "maxbrunet"; repo = pname; rev = "v${version}"; - sha256 = "sha256-Ew2UiWq/K93HfKqaQoDHPrkKgHkgzzzdQwJTXmSYTeE="; + sha256 = "sha256-La6d4se3mvoBIWjlw61ehIvoEwHqeny+4/MBGpeTYE8="; }; - cargoHash = "sha256-HsLDpfdL5/rQU8usKiWRnbZ5s6XxchbHpp+9SFhoDi4="; + cargoHash = "sha256-Wp+e83/lGUlZwSJcHcfGXAeUfiy9fDVjZJsWKbUIQGA="; meta = with lib; { description = "Automatically update system timezone based on location"; diff --git a/pkgs/tools/system/consul-template/default.nix b/pkgs/tools/system/consul-template/default.nix index ae095eabd423e..c71837ebb968e 100644 --- a/pkgs/tools/system/consul-template/default.nix +++ b/pkgs/tools/system/consul-template/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "consul-template"; - version = "0.38.1"; + version = "0.39.0"; src = fetchFromGitHub { owner = "hashicorp"; repo = "consul-template"; rev = "v${version}"; - hash = "sha256-zpoYketdEiiF25K0juIP8Y+yjBsc9Jfx0W17QN/vEyo="; + hash = "sha256-I6uv3UtYQ0tpwz/ml3ZL9mRchsqxa8UNPw+vMpvlqmM="; }; - vendorHash = "sha256-CjDVVgJq9LaVDxWRy2RN/ItaBmmulfBQ4ms0he51lqA="; + vendorHash = "sha256-xXRIYTd3rRe54lYDWI2PiCV8lG1H6cJfYpL+hdWZClU="; # consul-template tests depend on vault and consul services running to # execute tests so we skip them here diff --git a/pkgs/tools/system/gdu/default.nix b/pkgs/tools/system/gdu/default.nix index 19389acd4e143..dfb1179a08972 100644 --- a/pkgs/tools/system/gdu/default.nix +++ b/pkgs/tools/system/gdu/default.nix @@ -10,16 +10,16 @@ buildGoModule rec { pname = "gdu"; - version = "5.28.0"; + version = "5.29.0"; src = fetchFromGitHub { owner = "dundee"; repo = "gdu"; rev = "refs/tags/v${version}"; - hash = "sha256-HfWJVO62UeKE513fq1PaXyaldmrnQ/Fh5bXWSa0xGls="; + hash = "sha256-w48I7HU/pA53Pq6ZVwtby+YvFddVUjj8orL40Gifqoo="; }; - vendorHash = "sha256-SlVJDb24txy7DPsL0cG7LeGUjngXaUQ1SusgBfgf4PE="; + vendorHash = "sha256-aKhHC3sPRyi/l9BxeUgx+3TdYulb0cI9WxuPvbLoswg="; nativeBuildInputs = [ installShellFiles ]; @@ -40,6 +40,11 @@ buildGoModule rec { doCheck = !stdenv.isDarwin; + checkFlags = [ + # https://github.com/dundee/gdu/issues/371 + "-skip=TestStoredAnalyzer" + ]; + passthru.tests.version = testers.testVersion { package = gdu; }; meta = with lib; { diff --git a/pkgs/tools/system/netdata/default.nix b/pkgs/tools/system/netdata/default.nix index b2461760da701..9ddba232de19c 100644 --- a/pkgs/tools/system/netdata/default.nix +++ b/pkgs/tools/system/netdata/default.nix @@ -1,9 +1,9 @@ -{ lib, stdenv, fetchFromGitHub, fetchpatch, autoreconfHook, pkg-config, makeWrapper +{ lib, stdenv, fetchFromGitHub, fetchpatch, cmake, pkg-config, makeWrapper , CoreFoundation, IOKit, libossp_uuid , nixosTests -, netdata-go-plugins -, bash, curl, jemalloc, json_c, libuv, zlib, libyaml +, bash, curl, jemalloc, json_c, libuv, zlib, libyaml, libelf, libbpf , libcap, libuuid, lm_sensors, protobuf +, go, buildGoModule, ninja , withCups ? false, cups , withDBengine ? true, lz4 , withIpmi ? (!stdenv.isDarwin), freeipmi @@ -15,11 +15,12 @@ , withSsl ? true, openssl , withSystemdJournal ? (!stdenv.isDarwin), systemd , withDebug ? false +, withEbpf ? false +, withNetworkViewer ? (!stdenv.isDarwin) }: stdenv.mkDerivation rec { - # Don't forget to update go.d.plugin.nix as well - version = "1.44.3"; + version = "1.45.4"; pname = "netdata"; src = fetchFromGitHub { @@ -27,21 +28,22 @@ stdenv.mkDerivation rec { repo = "netdata"; rev = "v${version}"; hash = if withCloudUi - then "sha256-ahWaq6geEoc6NZ2oU/Dqnb0bjRXd+q1zaRGOSIYVYok=" - else "sha256-2Kvh2WuoJjJxsFKueMjCAbazqZdzoOTxakbPVsj9PBo="; + then "sha256-g/wxKtpNsDw/ZaUokdip39enQHMysJE6pYGsApuL4po=" + # we delete the v2 GUI after fetching + else "sha256-Mkrmvdr19sWzFOkdpt46mcsbA3CNpXy4w8um95xaWlo="; fetchSubmodules = true; # Remove v2 dashboard distributed under NCUL1. Make sure an empty # Makefile.am exists, as autoreconf will get confused otherwise. postFetch = lib.optionalString (!withCloudUi) '' - rm -rf $out/web/gui/v2/* - touch $out/web/gui/v2/Makefile.am + rm -rf $out/src/web/gui/v2/* + touch $out/src/web/gui/v2/Makefile.am ''; }; strictDeps = true; - nativeBuildInputs = [ autoreconfHook pkg-config makeWrapper protobuf ]; + nativeBuildInputs = [ cmake pkg-config makeWrapper go ninja ]; # bash is only used to rewrite shebangs buildInputs = [ bash curl jemalloc json_c libuv zlib libyaml ] ++ lib.optionals stdenv.isDarwin [ CoreFoundation IOKit libossp_uuid ] @@ -52,23 +54,23 @@ stdenv.mkDerivation rec { ++ lib.optionals withNetfilter [ libmnl libnetfilter_acct ] ++ lib.optionals withConnPubSub [ google-cloud-cpp grpc ] ++ lib.optionals withConnPrometheus [ snappy ] + ++ lib.optionals withEbpf [ libelf libbpf ] ++ lib.optionals (withCloud || withConnPrometheus) [ protobuf ] ++ lib.optionals withSystemdJournal [ systemd ] ++ lib.optionals withSsl [ openssl ]; patches = [ - # required to prevent plugins from relying on /etc - # and /var - ./no-files-in-etc-and-var.patch - - # Avoid build-only inputs in closure leaked by configure command: - # https://github.com/NixOS/nixpkgs/issues/175693#issuecomment-1143344162 - ./skip-CONFIGURE_COMMAND.patch - # Allow building without non-free v2 dashboard. (fetchpatch { - url = "https://github.com/peat-psuwit/netdata/commit/6ccbdd1500db2b205923968688d5f1777430a326.patch"; - hash = "sha256-jAyk5HlxdjFn5IP6jOKP8/SXOraMQSA6r1krThe+s7g="; + url = "https://github.com/netdata/netdata/pull/17240/commits/b108df72281633234b731b223d99ec99f1d36adf.patch"; + hash = "sha256-tgsnbNY0pxFU3bz1J1qPaAeVsozsk2bpHV2mNy8A9is="; + }) + # Allow for go.d plugins to access the right directory. + # Can be removed once > v1.45.4 is released + # https://github.com/netdata/netdata/pull/17661 + (fetchpatch { + url = "https://patch-diff.githubusercontent.com/raw/netdata/netdata/pull/17661.patch"; + sha256 = "sha256-j+mrwkibQio2KO8UnV7sxzCoHmkcsalHNzP+YvrRz74="; }) ]; @@ -83,8 +85,8 @@ stdenv.mkDerivation rec { env.NIX_CFLAGS_COMPILE = lib.optionalString withDebug "-O1 -ggdb -DNETDATA_INTERNAL_CHECKS=1"; postInstall = '' - ln -s ${netdata-go-plugins}/lib/netdata/conf.d/* $out/lib/netdata/conf.d - ln -s ${netdata-go-plugins}/bin/godplugin $out/libexec/netdata/plugins.d/go.d.plugin + # Relocate one folder above. + mv $out/usr/* $out/ '' + lib.optionalString (!stdenv.isDarwin) '' # rename this plugin so netdata will look for setuid wrapper mv $out/libexec/netdata/plugins.d/apps.plugin \ @@ -95,6 +97,10 @@ stdenv.mkDerivation rec { $out/libexec/netdata/plugins.d/perf.plugin.org mv $out/libexec/netdata/plugins.d/slabinfo.plugin \ $out/libexec/netdata/plugins.d/slabinfo.plugin.org + mv $out/libexec/netdata/plugins.d/debugfs.plugin \ + $out/libexec/netdata/plugins.d/debugfs.plugin.org + mv $out/libexec/netdata/plugins.d/logs-management.plugin \ + $out/libexec/netdata/plugins.d/logs-management.plugin.org ${lib.optionalString withSystemdJournal '' mv $out/libexec/netdata/plugins.d/systemd-journal.plugin \ $out/libexec/netdata/plugins.d/systemd-journal.plugin.org @@ -103,53 +109,108 @@ stdenv.mkDerivation rec { mv $out/libexec/netdata/plugins.d/freeipmi.plugin \ $out/libexec/netdata/plugins.d/freeipmi.plugin.org ''} + ${lib.optionalString withNetworkViewer '' + mv $out/libexec/netdata/plugins.d/network-viewer.plugin \ + $out/libexec/netdata/plugins.d/network-viewer.plugin.org + ''} + ${lib.optionalString (!withCloudUi) '' + rm -rf $out/share/netdata/web/index.html + cp $out/share/netdata/web/v1/index.html $out/share/netdata/web/index.html + ''} ''; preConfigure = lib.optionalString (!stdenv.isDarwin) '' - substituteInPlace collectors/python.d.plugin/python_modules/third_party/lm_sensors.py \ - --replace 'ctypes.util.find_library("sensors")' '"${lm_sensors.out}/lib/libsensors${stdenv.hostPlatform.extensions.sharedLibrary}"' + substituteInPlace src/collectors/python.d.plugin/python_modules/third_party/lm_sensors.py \ + --replace-fail 'ctypes.util.find_library("sensors")' '"${lm_sensors.out}/lib/libsensors${stdenv.hostPlatform.extensions.sharedLibrary}"' + '' + '' + export GOCACHE=$TMPDIR/go-cache + export GOPATH=$TMPDIR/go + export GOPROXY=file://${passthru.netdata-go-modules} + export GOSUMDB=off + + # Prevent the path to be caught into the Nix store path. + substituteInPlace CMakeLists.txt \ + --replace-fail 'set(CACHE_DIR "''${CMAKE_INSTALL_PREFIX}/var/cache/netdata")' 'set(CACHE_DIR "/var/cache/netdata")' \ + --replace-fail 'set(CONFIG_DIR "''${CMAKE_INSTALL_PREFIX}/etc/netdata")' 'set(CONFIG_DIR "/etc/netdata")' \ + --replace-fail 'set(LIBCONFIG_DIR "''${CMAKE_INSTALL_PREFIX}/usr/lib/netdata/conf.d")' 'set(LIBCONFIG_DIR "${placeholder "out"}/share/netdata/conf.d")' \ + --replace-fail 'set(LOG_DIR "''${CMAKE_INSTALL_PREFIX}/var/log/netdata")' 'set(LOG_DIR "/var/log/netdata")' \ + --replace-fail 'set(PLUGINS_DIR "''${CMAKE_INSTALL_PREFIX}/usr/libexec/netdata/plugins.d")' 'set(PLUGINS_DIR "${placeholder "out"}/libexec/netdata/plugins.d")' \ + --replace-fail 'set(VARLIB_DIR "''${CMAKE_INSTALL_PREFIX}/var/lib/netdata")' 'set(VARLIB_DIR "/var/lib/netdata")' \ + --replace-fail 'set(pkglibexecdir_POST "''${CMAKE_INSTALL_PREFIX}/usr/libexec/netdata")' 'set(pkglibexecdir_POST "${placeholder "out"}/libexec/netdata")' \ + --replace-fail 'set(localstatedir_POST "''${CMAKE_INSTALL_PREFIX}/var")' 'set(localstatedir_POST "/var")' \ + --replace-fail 'set(sbindir_POST "''${CMAKE_INSTALL_PREFIX}/usr/sbin")' 'set(sbindir_POST "${placeholder "out"}/bin")' \ + --replace-fail 'set(configdir_POST "''${CMAKE_INSTALL_PREFIX}/etc/netdata")' 'set(configdir_POST "/etc/netdata")' \ + --replace-fail 'set(libconfigdir_POST "''${CMAKE_INSTALL_PREFIX}/usr/lib/netdata/conf.d")' 'set(libconfigdir_POST "${placeholder "out"}/share/netdata/conf.d")' \ + --replace-fail 'set(cachedir_POST "''${CMAKE_INSTALL_PREFIX}/var/cache/netdata")' 'set(libconfigdir_POST "/var/cache/netdata")' \ + --replace-fail 'set(registrydir_POST "''${CMAKE_INSTALL_PREFIX}/var/lib/netdata/registry")' 'set(registrydir_POST "/var/lib/netdata/registry")' \ + --replace-fail 'set(varlibdir_POST "''${CMAKE_INSTALL_PREFIX}/var/lib/netdata")' 'set(varlibdir_POST "/var/lib/netdata")' ''; - configureFlags = [ - "--localstatedir=/var" - "--sysconfdir=/etc" - "--disable-ebpf" - "--with-jemalloc=${jemalloc}" - ] ++ lib.optionals (withSystemdJournal) [ - "--enable-plugin-systemd-journal" - ] ++ lib.optionals (!withDBengine) [ - "--disable-dbengine" - ] ++ lib.optionals (!withCloud) [ - "--disable-cloud" - ] ++ lib.optionals (!withCloudUi) [ - "--disable-cloud-ui" + cmakeFlags = [ + "-DWEB_DIR=share/netdata/web" + (lib.cmakeBool "ENABLE_CLOUD" withCloud) + # ACLK is agent cloud link. + (lib.cmakeBool "ENABLE_ACLK" withCloud) + (lib.cmakeBool "ENABLE_DASHBOARD_V2" withCloudUi) + (lib.cmakeBool "ENABLE_DBENGINE" withDBengine) + (lib.cmakeBool "ENABLE_PLUGIN_FREEIPMI" withIpmi) + (lib.cmakeBool "ENABLE_PLUGIN_SYSTEMD_JOURNAL" withSystemdJournal) + (lib.cmakeBool "ENABLE_PLUGIN_NETWORK_VIEWER" withNetworkViewer) + (lib.cmakeBool "ENABLE_PLUGIN_EBPF" withEbpf) + (lib.cmakeBool "ENABLE_PLUGIN_XENSTAT" false) + (lib.cmakeBool "ENABLE_PLUGIN_CUPS" withCups) + (lib.cmakeBool "ENABLE_EXPORTER_PROMETHEUS_REMOTE_WRITE" withConnPrometheus) + (lib.cmakeBool "ENABLE_JEMALLOC" true) + # Suggested by upstream. + "-G Ninja" ]; postFixup = '' - # remove once https://github.com/netdata/netdata/pull/16300 merged - substituteInPlace $out/bin/netdata-claim.sh \ - --replace /bin/echo echo - wrapProgram $out/bin/netdata-claim.sh --prefix PATH : ${lib.makeBinPath [ openssl ]} wrapProgram $out/libexec/netdata/plugins.d/cgroup-network-helper.sh --prefix PATH : ${lib.makeBinPath [ bash ]} wrapProgram $out/bin/netdatacli --set NETDATA_PIPENAME /run/netdata/ipc + + # Time to cleanup the output directory. + unlink $out/sbin + cp $out/etc/netdata/edit-config $out/bin/netdata-edit-config + mv $out/lib/netdata/conf.d $out/share/netdata/conf.d + rm -rf $out/{var,usr,etc} ''; enableParallelBuild = true; - passthru = { - inherit withIpmi; + passthru = rec { + netdata-go-modules = (buildGoModule { + pname = "netdata-go-plugins"; + inherit version src; + + sourceRoot = "${src.name}/src/go/collectors/go.d.plugin"; + + vendorHash = "sha256-KO+xMk6fpZCYRyxxKrsGfOHJ2bwjBaSmkgz1jIUHaZs="; + doCheck = false; + proxyVendor = true; + + ldflags = [ "-s" "-w" "-X main.version=${version}" ]; + + passthru.tests = tests; + meta = meta // { + description = "Netdata orchestrator for data collection modules written in Go"; + mainProgram = "godplugin"; + license = lib.licenses.gpl3Only; + }; + }).goModules; + inherit withIpmi withNetworkViewer; tests.netdata = nixosTests.netdata; }; meta = with lib; { - broken = stdenv.isDarwin || stdenv.buildPlatform != stdenv.hostPlatform; + broken = stdenv.isDarwin || stdenv.buildPlatform != stdenv.hostPlatform || withEbpf; description = "Real-time performance monitoring tool"; homepage = "https://www.netdata.cloud/"; changelog = "https://github.com/netdata/netdata/releases/tag/v${version}"; license = [ licenses.gpl3Plus ] ++ lib.optionals (withCloudUi) [ licenses.ncul1 ]; platforms = platforms.unix; - maintainers = with maintainers; [ raitobezarius ]; + maintainers = [ ]; }; } diff --git a/pkgs/tools/system/netdata/go.d.plugin.nix b/pkgs/tools/system/netdata/go.d.plugin.nix deleted file mode 100644 index 910ad29c13fa3..0000000000000 --- a/pkgs/tools/system/netdata/go.d.plugin.nix +++ /dev/null @@ -1,35 +0,0 @@ -{ lib, fetchFromGitHub, buildGoModule, nixosTests }: - -buildGoModule rec { - pname = "netdata-go-plugins"; - version = "0.58.1"; - - src = fetchFromGitHub { - owner = "netdata"; - repo = "go.d.plugin"; - rev = "v${version}"; - hash = "sha256-zzHm98jec7MXnzVsrLlYIk+ILA3Ei43853dM1LdFz5c="; - }; - - vendorHash = "sha256-eb+GRFhfWxDkfH4x2VF3ogyT5z4OcIoqHtEVJ1tGsdA="; - - doCheck = false; - - ldflags = [ "-s" "-w" "-X main.version=${version}" ]; - - postInstall = '' - mkdir -p $out/lib/netdata/conf.d - cp -r config/* $out/lib/netdata/conf.d - ''; - - passthru.tests = { inherit (nixosTests) netdata; }; - - meta = with lib; { - description = "Netdata orchestrator for data collection modules written in go"; - mainProgram = "godplugin"; - homepage = "https://github.com/netdata/go.d.plugin"; - changelog = "https://github.com/netdata/go.d.plugin/releases/tag/v${version}"; - license = licenses.gpl3Only; - maintainers = [ maintainers.raitobezarius ]; - }; -} diff --git a/pkgs/tools/system/netdata/no-files-in-etc-and-var.patch b/pkgs/tools/system/netdata/no-files-in-etc-and-var.patch deleted file mode 100644 index 039376fe4e3a7..0000000000000 --- a/pkgs/tools/system/netdata/no-files-in-etc-and-var.patch +++ /dev/null @@ -1,128 +0,0 @@ -diff --git c/collectors/Makefile.am i/collectors/Makefile.am -index 1bbb2e0ef..96c400d33 100644 ---- c/collectors/Makefile.am -+++ i/collectors/Makefile.am -@@ -33,7 +33,7 @@ usercustompluginsconfigdir=$(configdir)/custom-plugins.d - usergoconfigdir=$(configdir)/go.d - - # Explicitly install directories to avoid permission issues due to umask --install-exec-local: -+no-install-exec-local: - $(INSTALL) -d $(DESTDIR)$(usercustompluginsconfigdir) - $(INSTALL) -d $(DESTDIR)$(usergoconfigdir) - -diff --git c/collectors/charts.d.plugin/Makefile.am i/collectors/charts.d.plugin/Makefile.am -index f82992fd4..4cac1ae4f 100644 ---- c/collectors/charts.d.plugin/Makefile.am -+++ i/collectors/charts.d.plugin/Makefile.am -@@ -34,7 +34,7 @@ dist_userchartsconfig_DATA = \ - $(NULL) - - # Explicitly install directories to avoid permission issues due to umask --install-exec-local: -+no-install-exec-local: - $(INSTALL) -d $(DESTDIR)$(userchartsconfigdir) - - chartsconfigdir=$(libconfigdir)/charts.d -diff --git c/collectors/ebpf.plugin/Makefile.am i/collectors/ebpf.plugin/Makefile.am -index 2d5f92a6b..8b11c7502 100644 ---- c/collectors/ebpf.plugin/Makefile.am -+++ i/collectors/ebpf.plugin/Makefile.am -@@ -9,7 +9,7 @@ SUFFIXES = .in - userebpfconfigdir=$(configdir)/ebpf.d - - # Explicitly install directories to avoid permission issues due to umask --install-exec-local: -+no-install-exec-local: - $(INSTALL) -d $(DESTDIR)$(userebpfconfigdir) - - dist_noinst_DATA = \ -diff --git c/collectors/python.d.plugin/Makefile.am i/collectors/python.d.plugin/Makefile.am -index ca49c1c02..1b9bcc446 100644 ---- c/collectors/python.d.plugin/Makefile.am -+++ i/collectors/python.d.plugin/Makefile.am -@@ -32,7 +32,7 @@ dist_userpythonconfig_DATA = \ - $(NULL) - - # Explicitly install directories to avoid permission issues due to umask --install-exec-local: -+no-install-exec-local: - $(INSTALL) -d $(DESTDIR)$(userpythonconfigdir) - - pythonconfigdir=$(libconfigdir)/python.d -diff --git c/collectors/statsd.plugin/Makefile.am i/collectors/statsd.plugin/Makefile.am -index c8144c137..f8aaa89b6 100644 ---- c/collectors/statsd.plugin/Makefile.am -+++ i/collectors/statsd.plugin/Makefile.am -@@ -19,5 +19,5 @@ dist_userstatsdconfig_DATA = \ - $(NULL) - - # Explicitly install directories to avoid permission issues due to umask --install-exec-local: -+no-install-exec-local: - $(INSTALL) -d $(DESTDIR)$(userstatsdconfigdir) -diff --git c/health/Makefile.am i/health/Makefile.am -index 7d7bca4cc..3086876dd 100644 ---- c/health/Makefile.am -+++ i/health/Makefile.am -@@ -19,7 +19,7 @@ dist_userhealthconfig_DATA = \ - $(NULL) - - # Explicitly install directories to avoid permission issues due to umask --install-exec-local: -+no-install-exec-local: - $(INSTALL) -d $(DESTDIR)$(userhealthconfigdir) - - healthconfigdir=$(libconfigdir)/health.d -diff --git c/logsmanagement/Makefile.am i/logsmanagement/Makefile.am -index 33f08d556..1f08cbae9 100644 ---- c/logsmanagement/Makefile.am -+++ i/logsmanagement/Makefile.am -@@ -6,7 +6,7 @@ MAINTAINERCLEANFILES = $(srcdir)/Makefile.in - userlogsmanagconfigdir=$(configdir)/logsmanagement.d - - # Explicitly install directories to avoid permission issues due to umask --install-exec-local: -+no-install-exec-local: - $(INSTALL) -d $(DESTDIR)$(userlogsmanagconfigdir) - - dist_libconfig_DATA = \ -diff --git c/system/Makefile.am i/system/Makefile.am -index 1e96f6f4f..98122ecdc 100644 ---- c/system/Makefile.am -+++ i/system/Makefile.am -@@ -22,12 +22,9 @@ include $(top_srcdir)/build/subst.inc - SUFFIXES = .in - - dist_config_SCRIPTS = \ -- edit-config \ - $(NULL) - - dist_config_DATA = \ -- .install-type \ -- netdata-updater.conf \ - $(NULL) - - libconfigvnodesdir=$(libconfigdir)/vnodes -@@ -47,7 +44,7 @@ libsysrunitdir=$(libsysdir)/runit - libsyssystemddir=$(libsysdir)/systemd - - # Explicitly install directories to avoid permission issues due to umask --install-exec-local: -+no-install-exec-local: - $(INSTALL) -d $(DESTDIR)$(configdir) - $(INSTALL) -d $(DESTDIR)$(libsysdir) - $(INSTALL) -d $(DESTDIR)$(libsyscrondir) -diff --git c/web/Makefile.am i/web/Makefile.am -index be2c545c3..55f373114 100644 ---- c/web/Makefile.am -+++ i/web/Makefile.am -@@ -13,7 +13,7 @@ SUBDIRS = \ - usersslconfigdir=$(configdir)/ssl - - # Explicitly install directories to avoid permission issues due to umask --install-exec-local: -+no-install-exec-local: - $(INSTALL) -d $(DESTDIR)$(usersslconfigdir) - - dist_noinst_DATA = \ diff --git a/pkgs/tools/system/netdata/skip-CONFIGURE_COMMAND.patch b/pkgs/tools/system/netdata/skip-CONFIGURE_COMMAND.patch deleted file mode 100644 index 472da270798f3..0000000000000 --- a/pkgs/tools/system/netdata/skip-CONFIGURE_COMMAND.patch +++ /dev/null @@ -1,16 +0,0 @@ -Shrink closure size by avoiding paths embedded from configure call. - -https://github.com/NixOS/nixpkgs/issues/175693 -diff --git a/daemon/buildinfo.c b/daemon/buildinfo.c -index 56cde84fc..011e7579d 100644 ---- a/daemon/buildinfo.c -+++ b/daemon/buildinfo.c -@@ -1040,7 +1040,7 @@ static void build_info_set_status(BUILD_INFO_SLOT slot, bool status) { - - __attribute__((constructor)) void initialize_build_info(void) { - build_info_set_value(BIB_PACKAGING_NETDATA_VERSION, program_version); -- build_info_set_value(BIB_PACKAGING_CONFIGURE_OPTIONS, CONFIGURE_COMMAND); -+ build_info_set_value(BIB_PACKAGING_CONFIGURE_OPTIONS, "REMOVED FOR CLOSURE SIZE REASONS"); - - #ifdef COMPILED_FOR_LINUX - build_info_set_status(BIB_FEATURE_BUILT_FOR, true); diff --git a/pkgs/tools/system/vboot_reference/default.nix b/pkgs/tools/system/vboot_reference/default.nix index 4718173e430d2..6e5be5db44f9d 100644 --- a/pkgs/tools/system/vboot_reference/default.nix +++ b/pkgs/tools/system/vboot_reference/default.nix @@ -56,6 +56,6 @@ stdenv.mkDerivation rec { description = "Chrome OS partitioning and kernel signing tools"; license = licenses.bsd3; platforms = platforms.linux; - maintainers = with maintainers; [ lheckemann samueldr ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/tools/system/zx/default.nix b/pkgs/tools/system/zx/default.nix index f8e18a310629e..57d7cb97ea324 100644 --- a/pkgs/tools/system/zx/default.nix +++ b/pkgs/tools/system/zx/default.nix @@ -6,16 +6,16 @@ buildNpmPackage rec { pname = "zx"; - version = "8.1.2"; + version = "8.1.3"; src = fetchFromGitHub { owner = "google"; repo = "zx"; rev = version; - hash = "sha256-tv66idt+IfELc5TpMwDujJeIOi+kxFSl3RX3SrYL9ac="; + hash = "sha256-h3osu1FDBZsawXxtSVBDjcIiRdqgElPMBxdx2N4cfeQ="; }; - npmDepsHash = "sha256-WZJDbdqoy/JkKAR00nG4IdM6okHLsqfudHw0Gs+WntM="; + npmDepsHash = "sha256-bijPRIiGNGfbtZiQ5aEVGI3DfYfFeA1YbNCTdljDhfw="; meta = { description = "Tool for writing scripts using JavaScript"; diff --git a/pkgs/tools/text/bashblog/default.nix b/pkgs/tools/text/bashblog/default.nix index 54e5d6f748e0c..0c43e6eecf1ce 100644 --- a/pkgs/tools/text/bashblog/default.nix +++ b/pkgs/tools/text/bashblog/default.nix @@ -58,6 +58,6 @@ in stdenv.mkDerivation { homepage = "https://github.com/cfenollosa/bashblog"; license = licenses.gpl3Only; platforms = platforms.unix; - maintainers = with maintainers; [ wolfangaukang ]; + maintainers = [ ]; }; } diff --git a/pkgs/tools/text/epub2txt2/default.nix b/pkgs/tools/text/epub2txt2/default.nix index af335773ea0c1..8ccc01d57b5bc 100644 --- a/pkgs/tools/text/epub2txt2/default.nix +++ b/pkgs/tools/text/epub2txt2/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "epub2txt2"; - version = "2.06"; + version = "2.07"; src = fetchFromGitHub { owner = "kevinboone"; repo = pname; rev = "refs/tags/v${version}"; - sha256 = "sha256-zzcig5XNh9TqUHginsfoC47WrKavqi6k6ezir+OOMJk="; + sha256 = "sha256-/P81ZXhB0wyRx2bb/CO7+kTTNspYKoGUpBGLb8Yfb5I="; }; makeFlags = [ "CC:=$(CC)" "PREFIX:=$(out)" ]; diff --git a/pkgs/tools/text/mdbook-admonish/default.nix b/pkgs/tools/text/mdbook-admonish/default.nix index f579315cd9084..1a781053811f3 100644 --- a/pkgs/tools/text/mdbook-admonish/default.nix +++ b/pkgs/tools/text/mdbook-admonish/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "mdbook-admonish"; - version = "1.17.1"; + version = "1.18.0"; src = fetchFromGitHub { owner = "tommilligan"; repo = pname; rev = "v${version}"; - hash = "sha256-Jj3mbsH/rFrUTWcgT4+KQJ2Bae58STHBB+7oZwbrhLk="; + hash = "sha256-GNQIOjgHCt3XPCzF0RjV9YStI8psLdHhTPuTkdgx8vA="; }; - cargoHash = "sha256-a2JGpIvI65djxyB1LZFWgIQmhsLPLhiYkyvqKwysgQo="; + cargoHash = "sha256-CG4WvAFDqtRUjF4kJ29363F6jWRChIXgT5i6ozwV4pw="; buildInputs = lib.optionals stdenv.isDarwin [ CoreServices ]; diff --git a/pkgs/tools/text/vale/default.nix b/pkgs/tools/text/vale/default.nix index 22914dc547aad..2dfb2f00f662e 100644 --- a/pkgs/tools/text/vale/default.nix +++ b/pkgs/tools/text/vale/default.nix @@ -10,7 +10,7 @@ buildGoModule rec { pname = "vale"; - version = "3.5.0"; + version = "3.6.0"; subPackages = [ "cmd/vale" ]; @@ -18,7 +18,7 @@ buildGoModule rec { owner = "errata-ai"; repo = "vale"; rev = "v${version}"; - hash = "sha256-yp3jy0iEO4DHhAskp2Y56KSjTddNTcQRf+HgxKa0o9c="; + hash = "sha256-Xkea1o0ywRKIg0cMJuxQehHbgVF0SSC9VRa53FQEong="; }; vendorHash = "sha256-OLlViQKLTark9yknnjJFiEThFtxNNjue5LUp1P/anKU="; diff --git a/pkgs/tools/typesetting/marp/default.nix b/pkgs/tools/typesetting/marp/default.nix index b61cc4dcdf661..2412935a0f9d3 100644 --- a/pkgs/tools/typesetting/marp/default.nix +++ b/pkgs/tools/typesetting/marp/default.nix @@ -10,18 +10,18 @@ stdenv.mkDerivation (finalAttrs: { pname = "marp-cli"; - version = "3.2.0"; + version = "3.4.0"; src = fetchFromGitHub { owner = "marp-team"; repo = "marp-cli"; rev = "v${finalAttrs.version}"; - hash = "sha256-bx5mq5KI85qUct/9Hr6mby6dWmRkmpVbiIw+M8PZas8="; + hash = "sha256-azscuPkQ9/xcQtBg+5pJigXSQQVtBGvbd7ZwiLwU7Qo="; }; offlineCache = fetchYarnDeps { yarnLock = "${finalAttrs.src}/yarn.lock"; - hash = "sha256-BogCt7ezmWxv2YfhljHYoBf47/FHR0qLZosjnoQhqgs="; + hash = "sha256-b/JyhsfXEbmM6+ajrjL65WhX9u9MEH+m1NHE6cTyf2g="; }; nativeBuildInputs = [ diff --git a/pkgs/tools/video/go2rtc/default.nix b/pkgs/tools/video/go2rtc/default.nix index fb5d2003af3b9..39be2d40369be 100644 --- a/pkgs/tools/video/go2rtc/default.nix +++ b/pkgs/tools/video/go2rtc/default.nix @@ -5,13 +5,13 @@ buildGoModule rec { pname = "go2rtc"; - version = "1.9.3"; + version = "1.9.4"; src = fetchFromGitHub { owner = "AlexxIT"; repo = "go2rtc"; rev = "refs/tags/v${version}"; - hash = "sha256-p79LX7tHkQTVBWmXsKHMcXpC5idMgBmDtZxq+kQ0GEo="; + hash = "sha256-LK2+hNgP9EhnAL9QKzvfn0+pYjuJJDB7l1fd57jeCWw="; }; vendorHash = "sha256-mUdUMZf3KhJyE0iv2yvWtkHa+pyXcv2RTZY+JtBLrSQ="; diff --git a/pkgs/tools/virtualization/ovftool/default.nix b/pkgs/tools/virtualization/ovftool/default.nix index 34312c412511c..46e1614385bf9 100644 --- a/pkgs/tools/virtualization/ovftool/default.nix +++ b/pkgs/tools/virtualization/ovftool/default.nix @@ -251,7 +251,7 @@ stdenv.mkDerivation { homepage = "https://developer.vmware.com/web/tool/ovf-tool/"; sourceProvenance = with sourceTypes; [ binaryNativeCode ]; license = licenses.unfree; - maintainers = with maintainers; [ numinit wolfangaukang thanegill ]; + maintainers = with maintainers; [ numinit thanegill ]; platforms = builtins.attrNames ovftoolSystems; mainProgram = "ovftool"; knownVulnerabilities = [ diff --git a/pkgs/tools/virtualization/xva-img/default.nix b/pkgs/tools/virtualization/xva-img/default.nix index 09eb5745e5701..65e04bb555d19 100644 --- a/pkgs/tools/virtualization/xva-img/default.nix +++ b/pkgs/tools/virtualization/xva-img/default.nix @@ -16,7 +16,7 @@ stdenv.mkDerivation rec { buildInputs = [ openssl ]; meta = { - maintainers = with lib.maintainers; [ lheckemann willibutz ]; + maintainers = with lib.maintainers; [ willibutz ]; description = "Tool for converting Xen images to raw and back"; license = lib.licenses.gpl2Plus; platforms = lib.platforms.unix; diff --git a/pkgs/top-level/aliases.nix b/pkgs/top-level/aliases.nix index b107ad5da1879..95fc867172e55 100644 --- a/pkgs/top-level/aliases.nix +++ b/pkgs/top-level/aliases.nix @@ -82,6 +82,7 @@ mapAliases ({ apacheAnt_1_9 = throw "Ant 1.9 has been removed since it's not used in nixpkgs anymore"; # Added 2023-11-12 antimicroX = antimicrox; # Added 2021-10-31 appthreat-depscan = dep-scan; # Added 2024-04-10 + arcanist = throw "arcanist was removed as phabricator is not supported and does not accept fixes"; # Added 2024-06-07 arcanPackages = throw "arcanPackages was removed and its sub-attributes were promoted to top-level"; # Added 2023-11-26 archiveopteryx = throw "archiveopteryx depended on an unsupported version of OpenSSL and was unmaintained"; # Added 2024-01-03 ardour_6 = throw "ardour_6 has been removed in favor of newer versions"; # Added 2023-10-13 @@ -265,6 +266,7 @@ mapAliases ({ dhcp = throw "dhcp (ISC DHCP) has been removed from nixpkgs, because it reached its end of life"; # Added 2023-04-04 dibbler = throw "dibbler was removed because it is not maintained anymore"; # Added 2024-05-14 dnnl = oneDNN; # Added 2020-04-22 + docker-distribution = distribution; # Added 2023-12-26 docker-machine = throw "'docker-machine' has been removed, because the upstream project was archived"; # Added 2023-12-27 docker-machine-kvm = throw "'docker-machine-kvm' has been removed, because 'docker-machine' was archived upstream and removed"; # Added 2023-12-27 docker-machine-xhyve = throw "'docker-machine-xhyve' has been removed, because 'docker-machine' was archived upstream and removed"; # Added 2023-12-27 @@ -375,6 +377,7 @@ mapAliases ({ faustStk = faustPhysicalModeling; # Added 2023-05-16 fastnlo = fastnlo-toolkit; # Added 2021-04-24 fastnlo_toolkit = fastnlo-toolkit; # Added 2024-01-03 + fcitx5-catppuccin = catppuccin-fcitx5; # Added 2024-06-19 inherit (luaPackages) fennel; # Added 2022-09-24 fetchFromGithub = throw "You meant fetchFromGitHub, with a capital H"; # preserve FIL-plugins = fil-plugins; # Added 2024-06-12 @@ -522,6 +525,7 @@ mapAliases ({ grab-site = throw "grab-site has been removed because it's unmaintained and broken"; # Added 2023-11-12 gradle_4 = throw "gradle_4 has been removed because it's no longer being updated"; # Added 2023-01-17 gradle_5 = throw "gradle_5 has been removed because it's no longer being updated"; # Added 2023-01-17 + grafana_reporter = grafana-reporter; # Added 2024-06-09 gr-ais = throw "'gr-ais' has been renamed to/replaced by 'gnuradio3_7.pkgs.ais'"; # Converted to throw 2023-09-10 graylog = throw "graylog is now available in versions 3.3 up to 5.0. Please mind the upgrade path and choose the appropriate version. Direct upgrading from 3.3 to 4.3 or above is not supported"; # Added 2023-04-24 graylog-3_3 = throw "graylog 3.x is EOL. Please consider downgrading nixpkgs if you need an upgrade from 3.x to latest series."; # Added 2023-10-09 @@ -562,6 +566,7 @@ mapAliases ({ hip-amd = throw "'hip-amd' has been removed in favor of 'rocmPackages.clr'"; # Added 2023-10-08 hip-common = throw "'hip-common' has been replaced with 'rocmPackages.hip-common'"; # Added 2023-10-08 hip-nvidia = throw "'hip-nvidia' has been removed in favor of 'rocmPackages.clr'"; # Added 2023-10-08 + hll2390dw-cups = throw "The hll2390dw-cups package was dropped since it was unmaintained."; # Added 2024-06-21 ht-rust = xh; # Added 2021-02-13 hydra-unstable = hydra_unstable; # added 2022-05-10 hyper-haskell = throw "'hyper-haskell' has been removed. reason: has been broken for a long time and depends on an insecure electron version"; # Added 2024-03-14 @@ -580,6 +585,7 @@ mapAliases ({ imlib = throw "imlib has been dropped due to the lack of maintenance from upstream since 2004"; # Added 2023-01-04 indiepass-desktop = throw "indiepass-desktop has been dropped because it does not work with recent Electron versions"; # Added 2024-03-14 indigenous-desktop = throw "'indigenous-desktop' has been renamed to/replaced by 'indiepass-desktop'"; # Added 2023-11-08 + input-utils = throw "The input-utils package was dropped since it was unmaintained."; # Added 2024-06-21 instead-launcher = throw "instead-launcher has been removed, because it depended on qt4"; # Added 2023-07-26 insync-v3 = throw "insync-v3 has been merged into the insync package; use insync instead"; #Added 2023-05-13 index-fm = libsForQt5.mauiPackages.index; # added 2022-05-17 @@ -822,6 +828,7 @@ mapAliases ({ ### M ### MACS2 = macs2; # Added 2023-06-12 + mailman-rss = throw "The mailman-rss package was dropped since it was unmaintained."; # Added 2024-06-21 mariadb_104 = throw "mariadb_104 has been removed from nixpkgs, please switch to another version like mariadb_106"; # Added 2023-09-11 mariadb_1010 = throw "mariadb_1010 has been removed from nixpkgs, please switch to another version like mariadb_1011"; # Added 2023-11-14 mariadb-client = hiPrio mariadb.client; #added 2019.07.28 @@ -916,6 +923,8 @@ mapAliases ({ ); nix-review = throw "'nix-review' has been renamed to/replaced by 'nixpkgs-review'"; # Converted to throw 2023-09-10 nix-template-rpm = throw "'nix-template-rpm' has been removed as it is broken and unmaintained"; # Added 2023-11-20 + nix-top = throw "The nix-top package was dropped since it was unmaintained."; # Added 2024-06-21 + nix-universal-prefetch = throw "The nix-universal-prefetch package was dropped since it was unmaintained."; # Added 2024-06-21 nixFlakes = nixVersions.stable; # Added 2021-05-21 nixStable = nixVersions.stable; # Added 2022-01-24 nixUnstable = throw "nixUnstable has been removed. For bleeding edge (Nix master, roughly weekly updated) use nixVersions.git, otherwise use nixVersions.latest."; # Converted to throw 2024-04-22 @@ -1202,6 +1211,7 @@ mapAliases ({ ### S ### s2n = s2n-tls; # Added 2021-03-03 + sandboxfs = throw "'sandboxfs' has been removed due to being unmaintained, consider using linux namespaces for sandboxing instead"; # Added 2024-06-06 sane-backends-git = sane-backends; # Added 2021-02-19 scantailor = scantailor-advanced; # Added 2022-05-26 schildichat-web = throw '' @@ -1331,6 +1341,7 @@ mapAliases ({ uberwriter = apostrophe; # Added 2020-04-23 ubootBeagleboneBlack = ubootAmx335xEVM; # Added 2020-01-21 ue4 = throw "ue4 has been removed, because the package was broken for years"; # Added 2023-11-22 + uefi-firmware-parser = throw "The uefi-firmware-parser package was dropped since it was unmaintained."; # Added 2024-06-21 uhd3_5 = throw "uhd3_5 has been removed, because it was no longer needed"; # Added 2023-10-07 uhhyou.lv2 = throw "'uhhyou.lv2' has been removed, upstream gone"; # Added 2023-06-21 unicorn-emu = unicorn; # Added 2020-10-29 @@ -1421,7 +1432,7 @@ mapAliases ({ xineLib = xine-lib; # Added 2021-04-27 xineUI = xine-ui; # Added 2021-04-27 xmlada = gnatPackages.xmlada; # Added 2024-02-25 - xonsh-unwrapped = xonsh.passthru.unwrapped; + xonsh-unwrapped = python3Packages.xonsh; # Added 2024-06-18 xtrt = throw "xtrt has been removed due to being abandoned"; # Added 2023-05-25 xulrunner = firefox-unwrapped; # Added 2023-11-03 xvfb_run = xvfb-run; # Added 2021-05-07 @@ -1467,6 +1478,10 @@ mapAliases ({ inherit (stdenv.hostPlatform) system; # Added 2021-10-22 inherit (stdenv) buildPlatform hostPlatform targetPlatform; # Added 2023-01-09 + freebsdCross = freebsd; # Added 2024-06-18 + netbsdCross = netbsd; # Added 2024-06-18 + openbsdCross = openbsd; # Added 2024-06-18 + # LLVM packages for (integration) testing that should not be used inside Nixpkgs: llvmPackages_latest = llvmPackages_18; llvmPackages_git = recurseIntoAttrs (callPackage ../development/compilers/llvm/git { diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index b2f50fc23e360..f52160e15aeae 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -61,7 +61,7 @@ with pkgs; }; stdenvNoLibs = - if stdenv.hostPlatform != stdenv.buildPlatform && (stdenv.hostPlatform.isDarwin || stdenv.hostPlatform.useLLVM or false) + if stdenvNoCC.hostPlatform != stdenvNoCC.buildPlatform && (stdenv.hostPlatform.isDarwin || stdenv.hostPlatform.useLLVM or false) then # We cannot touch binutils or cc themselves, because that will cause # infinite recursion. So instead, we just choose a libc based on the @@ -1751,8 +1751,6 @@ with pkgs; copier = callPackage ../tools/misc/copier { }; - gabutdm = callPackage ../applications/networking/gabutdm { }; - gamemode = callPackage ../tools/games/gamemode { libgamemode32 = pkgsi686Linux.gamemode.lib; }; @@ -3060,8 +3058,6 @@ with pkgs; lilo = callPackage ../tools/misc/lilo { }; - logseq = callPackage ../applications/misc/logseq { }; - natls = callPackage ../tools/misc/natls { }; notion-app-enhanced = callPackage ../applications/office/notion-app-enhanced { }; @@ -3201,8 +3197,6 @@ with pkgs; arangodb = callPackage ../servers/nosql/arangodb { }; - arcanist = callPackage ../development/tools/misc/arcanist { php = php81; }; - arduino = arduino-core.override { withGui = true; }; arduino-ci = callPackage ../development/embedded/arduino/arduino-ci { }; @@ -3636,6 +3630,7 @@ with pkgs; dell-command-configure = callPackage ../tools/system/dell-command-configure { }; deltachat-desktop = callPackage ../applications/networking/instant-messengers/deltachat-desktop { + electron = electron_30; inherit (darwin.apple_sdk.frameworks) CoreServices; }; @@ -5695,6 +5690,11 @@ with pkgs; loccount = callPackage ../development/tools/misc/loccount { }; + logseq = callPackage ../by-name/lo/logseq/package.nix { + # electron version from: https://github.com/logseq/logseq/blob/d8c6ca264bdf9a6a0f03c46dbf3509210367624a/package.json#L116 + electron = electron_28; + }; + long-shebang = callPackage ../misc/long-shebang { }; lssecret = callPackage ../misc/lssecret {}; @@ -5968,9 +5968,6 @@ with pkgs; inherit (darwin.apple_sdk.frameworks) AppKit Security; }; - odoo = callPackage ../applications/finance/odoo { }; - odoo15 = callPackage ../applications/finance/odoo/odoo15.nix { }; - odafileconverter = libsForQt5.callPackage ../applications/graphics/odafileconverter { }; oil-buku = callPackage ../applications/misc/oil-buku { }; @@ -7675,8 +7672,6 @@ with pkgs; emscriptenStdenv = stdenv // { mkDerivation = buildEmscriptenPackage; }; - efibootmgr = callPackage ../tools/system/efibootmgr { }; - efivar = callPackage ../tools/system/efivar { }; eget = callPackage ../tools/misc/eget { }; @@ -7883,8 +7878,6 @@ with pkgs; flashbench = callPackage ../os-specific/linux/flashbench { }; - flatpak = callPackage ../development/libraries/flatpak { }; - flatpak-builder = callPackage ../development/tools/flatpak-builder { binutils = binutils-unwrapped; }; @@ -8336,8 +8329,6 @@ with pkgs; gnome-extension-manager = callPackage ../applications/misc/gnome-extension-manager { }; - gnome-feeds = callPackage ../applications/networking/feedreaders/gnome-feeds { }; - gnome-frog = callPackage ../applications/misc/gnome-frog { }; gnome-keysign = callPackage ../tools/security/gnome-keysign { }; @@ -8963,8 +8954,6 @@ with pkgs; httpie = with python3Packages; toPythonApplication httpie; - httping = callPackage ../tools/networking/httping { }; - httplz = callPackage ../tools/networking/httplz { }; httpfs2 = callPackage ../tools/filesystems/httpfs { }; @@ -9120,8 +9109,6 @@ with pkgs; input-remapper = python3Packages.callPackage ../tools/inputmethods/input-remapper { }; - input-utils = callPackage ../os-specific/linux/input-utils { }; - inql = callPackage ../tools/security/inql { }; intel-media-sdk = callPackage ../development/libraries/intel-media-sdk { }; @@ -9939,8 +9926,6 @@ with pkgs; withCloud = !stdenv.isDarwin; withCloudUi = true; }; - # Exposed here so the bots can auto-upgrade it - netdata-go-plugins = callPackage ../tools/system/netdata/go.d.plugin.nix { }; netsurf = recurseIntoAttrs (callPackage ../applications/networking/browsers/netsurf { }); netsurf-browser = netsurf.browser; @@ -12651,8 +12636,6 @@ with pkgs; sanctity = callPackage ../tools/misc/sanctity { }; - sandboxfs = callPackage ../tools/filesystems/sandboxfs { }; - sanjuuni = callPackage ../tools/graphics/sanjuuni { }; sasquatch = callPackage ../tools/filesystems/sasquatch { }; @@ -15464,7 +15447,7 @@ with pkgs; dontStrip = true; })); - gccCrossLibcStdenv = overrideCC stdenv buildPackages.gccWithoutTargetLibc; + gccCrossLibcStdenv = overrideCC stdenvNoCC buildPackages.gccWithoutTargetLibc; crossLibcStdenv = if stdenv.hostPlatform.useLLVM or false || stdenv.hostPlatform.isDarwin @@ -16137,8 +16120,6 @@ with pkgs; julia-stable-bin = julia_110-bin; julia-bin = julia-stable-bin; - jwasm = callPackage ../development/compilers/jwasm { }; - kind2 = darwin.apple_sdk_11_0.callPackage ../development/compilers/kind2 { }; kingstvis = callPackage ../applications/science/electronics/kingstvis { }; @@ -17102,8 +17083,6 @@ with pkgs; jdk = jdk21; }; - clojure-lsp = callPackage ../development/tools/misc/clojure-lsp { }; - clooj = callPackage ../development/interpreters/clojure/clooj.nix { }; dhall = haskell.lib.compose.justStaticExecutables haskellPackages.dhall; @@ -19722,8 +19701,6 @@ with pkgs; udis86 = callPackage ../development/tools/udis86 { }; - uefi-firmware-parser = callPackage ../development/tools/analysis/uefi-firmware-parser { }; - uhd = callPackage ../applications/radio/uhd { }; uhdMinimal = uhd.override { enableUtils = false; @@ -20965,9 +20942,9 @@ with pkgs; if stdenv.targetPlatform.useiOSPrebuilt then targetPackages.darwin.iosSdkPkgs.libraries or darwin.iosSdkPkgs.libraries else targetPackages.darwin.LibsystemCross or (throw "don't yet have a `targetPackages.darwin.LibsystemCross for ${stdenv.targetPlatform.config}`") - else if name == "fblibc" then targetPackages.freebsdCross.libc or freebsdCross.libc - else if name == "oblibc" then targetPackages.openbsdCross.libc or openbsdCross.libc - else if name == "nblibc" then targetPackages.netbsdCross.libc or netbsdCross.libc + else if name == "fblibc" then targetPackages.freebsd.libc or freebsd.libc + else if name == "oblibc" then targetPackages.openbsd.libc or openbsd.libc + else if name == "nblibc" then targetPackages.netbsd.libc or netbsd.libc else if name == "wasilibc" then targetPackages.wasilibc or wasilibc else if name == "relibc" then targetPackages.relibc or relibc else throw "Unknown libc ${name}"; @@ -25614,8 +25591,6 @@ with pkgs; phlare = callPackage ../servers/monitoring/phlare { }; - grafana_reporter = callPackage ../servers/monitoring/grafana-reporter { }; - grafana-image-renderer = callPackage ../servers/monitoring/grafana-image-renderer { }; grafana-dash-n-grab = callPackage ../servers/monitoring/grafana-dash-n-grab { }; @@ -25779,8 +25754,6 @@ with pkgs; inherit (mailmanPackages) mailman mailman-hyperkitty; mailman-web = mailmanPackages.web; - mailman-rss = callPackage ../tools/misc/mailman-rss { }; - listadmin = callPackage ../applications/networking/listadmin { }; maker-panel = callPackage ../tools/misc/maker-panel { }; @@ -28029,8 +28002,6 @@ with pkgs; vendir = callPackage ../development/tools/vendir { }; - vndr = callPackage ../development/tools/vndr { }; - vdo = callPackage ../os-specific/linux/vdo { }; windows = callPackages ../os-specific/windows {}; @@ -30048,8 +30019,6 @@ with pkgs; coursera-dl = callPackage ../applications/misc/coursera-dl { }; - coyim = callPackage ../applications/networking/instant-messengers/coyim { }; - cozy-drive = callPackage ../applications/networking/cozy-drive { }; cplay-ng = callPackage ../applications/audio/cplay-ng { }; @@ -30203,8 +30172,6 @@ with pkgs; docker-machine-hyperkit = callPackage ../applications/networking/cluster/docker-machine/hyperkit.nix { }; docker-machine-kvm2 = callPackage ../applications/networking/cluster/docker-machine/kvm2.nix { }; - docker-distribution = callPackage ../applications/virtualization/docker/distribution.nix { }; - dockfmt = callPackage ../development/tools/dockfmt { }; afterburn = callPackage ../tools/admin/afterburn { }; @@ -31138,6 +31105,9 @@ with pkgs; jdk = jdk21; withJcef = false; }; + jdk-no-jcef-17 = callPackage ../development/compilers/jetbrains-jdk/17.nix { + withJcef = false; + }; jdk = callPackage ../development/compilers/jetbrains-jdk { jdk = jdk21; }; @@ -31571,8 +31541,6 @@ with pkgs; singularity-overriden-nixos ; - sfwbar = callPackage ../applications/misc/sfwbar { }; - skate = callPackage ../applications/misc/skate { }; slack = callPackage ../applications/networking/instant-messengers/slack { }; @@ -32304,13 +32272,11 @@ with pkgs; libreoffice-bin = callPackage ../applications/office/libreoffice/darwin { }; libreoffice = hiPrio libreoffice-still; + libreoffice-unwrapped = libreoffice.unwrapped; libreoffice-qt = hiPrio libreoffice-qt-still; - libreoffice-qt-unwrapped = libreoffice-qt.unwrapped; - libreoffice-unwrapped = libreoffice.unwrapped; - libreoffice-qt-fresh = lowPrio (callPackage ../applications/office/libreoffice/wrapper.nix { unwrapped = libsForQt5.callPackage ../applications/office/libreoffice { kdeIntegration = true; @@ -32327,6 +32293,9 @@ with pkgs; }); libreoffice-qt-still-unwrapped = libreoffice-qt-still.unwrapped; + libreoffice-qt6 = hiPrio libreoffice-qt6-still; + libreoffice-qt6-unwrapped = libreoffice-qt6.unwrapped; + libreoffice-qt6-fresh = lowPrio (callPackage ../applications/office/libreoffice/wrapper.nix { unwrapped = kdePackages.callPackage ../applications/office/libreoffice { kdeIntegration = true; @@ -35579,8 +35548,6 @@ with pkgs; xmobar = haskellPackages.xmobar.bin; - xmonad-log = callPackage ../tools/misc/xmonad-log { }; - xmonad-with-packages = callPackage ../applications/window-managers/xmonad/wrapper.nix { inherit (haskellPackages) ghcWithPackages; packages = _: [ haskellPackages.xmonad-contrib ]; @@ -39325,8 +39292,9 @@ with pkgs; kops_1_26 kops_1_27 kops_1_28 + kops_1_29 ; - kops = kops_1_28; + kops = kops_1_29; lguf-brightness = callPackage ../misc/lguf-brightness { }; @@ -39590,12 +39558,8 @@ with pkgs; nix-script = callPackage ../tools/nix/nix-script { }; - nix-top = callPackage ../tools/package-management/nix-top { }; - nix-tree = haskell.lib.compose.justStaticExecutables (haskellPackages.nix-tree); - nix-universal-prefetch = callPackage ../tools/package-management/nix-universal-prefetch { }; - nixpkgs-review = callPackage ../tools/package-management/nixpkgs-review { }; nix-serve = callPackage ../tools/package-management/nix-serve { }; @@ -39855,8 +39819,6 @@ with pkgs; canon-cups-ufr2 = callPackage ../misc/cups/drivers/canon { }; - hll2390dw-cups = callPackage ../misc/cups/drivers/hll2390dw-cups { }; - mfc465cncupswrapper = callPackage ../misc/cups/drivers/brother/mfc465cncupswrapper { }; mfc465cnlpr = callPackage ../misc/cups/drivers/brother/mfc465cnlpr { }; @@ -40609,18 +40571,11 @@ with pkgs; name = "bsd-setup-hook"; } ../os-specific/bsd/setup-hook.sh; - inherit (callPackage ../os-specific/bsd/freebsd { }) - freebsd freebsdCross; + freebsd = callPackage ../os-specific/bsd/freebsd { }; netbsd = callPackage ../os-specific/bsd/netbsd { }; - netbsdCross = callPackage ../os-specific/bsd/netbsd { - stdenv = crossLibcStdenv; - }; openbsd = callPackage ../os-specific/bsd/openbsd { }; - openbsdCross = callPackage ../os-specific/bsd/openbsd { - stdenv = crossLibcStdenv; - }; powershell = callPackage ../shells/powershell { }; @@ -40705,8 +40660,6 @@ with pkgs; webwormhole = callPackage ../tools/networking/webwormhole { }; - werf = callPackage ../applications/networking/cluster/werf { }; - yor = callPackage ../applications/networking/cluster/yor { }; wifi-password = callPackage ../os-specific/darwin/wifi-password { }; diff --git a/pkgs/top-level/haskell-packages.nix b/pkgs/top-level/haskell-packages.nix index 75f0e54d697cb..b924a29f26162 100644 --- a/pkgs/top-level/haskell-packages.nix +++ b/pkgs/top-level/haskell-packages.nix @@ -229,7 +229,7 @@ in { buildTargetLlvmPackages = pkgsBuildTarget.llvmPackages_12; llvmPackages = pkgs.llvmPackages_12; }; - ghc948 = callPackage ../development/compilers/ghc/9.4.8.fixme.nix { + ghc948 = callPackage ../development/compilers/ghc/9.4.8.nix { bootPkgs = # Building with 9.2 is broken due to # https://gitlab.haskell.org/ghc/ghc/-/issues/21914 @@ -568,7 +568,7 @@ in { buildHaskellPackages = ghc.bootPkgs; ghc = bh.compiler.ghcjs810; compilerConfig = callPackage ../development/haskell-modules/configuration-ghc-8.10.x.nix { }; - packageSetConfig = callPackage ../development/haskell-modules/configuration-ghcjs.nix { }; + packageSetConfig = callPackage ../development/haskell-modules/configuration-ghcjs-8.x.nix { }; }; # The integer-simple attribute set contains package sets for all the GHC compilers diff --git a/pkgs/top-level/kodi-packages.nix b/pkgs/top-level/kodi-packages.nix index a294fa2e0d301..d82b6d150a8bc 100644 --- a/pkgs/top-level/kodi-packages.nix +++ b/pkgs/top-level/kodi-packages.nix @@ -101,6 +101,8 @@ let raiplay = callPackage ../applications/video/kodi/addons/raiplay { }; + skyvideoitalia = callPackage ../applications/video/kodi/addons/skyvideoitalia { }; + svtplay = callPackage ../applications/video/kodi/addons/svtplay { }; steam-controller = callPackage ../applications/video/kodi/addons/steam-controller { }; diff --git a/pkgs/top-level/linux-kernels.nix b/pkgs/top-level/linux-kernels.nix index f26537876d6a0..cf4d860a82326 100644 --- a/pkgs/top-level/linux-kernels.nix +++ b/pkgs/top-level/linux-kernels.nix @@ -318,8 +318,6 @@ in { akvcam = callPackage ../os-specific/linux/akvcam { }; - amdgpu-pro = callPackage ../os-specific/linux/amdgpu-pro { }; - apfs = callPackage ../os-specific/linux/apfs { }; ax99100 = callPackage ../os-specific/linux/ax99100 {}; @@ -605,6 +603,7 @@ in { rtl8723bs = throw "rtl8723bs was added in mainline kernel version 4.12"; # Added 2023-06-14 vm-tools = self.mm-tools; xmm7360-pci = throw "Support for the XMM7360 WWAN card was added to the iosm kmod in mainline kernel version 5.18"; + amdgpu-pro = throw "amdgpu-pro was removed due to lack of maintenance"; # Added 2024-06-16 }); hardenedPackagesFor = kernel: overrides: packagesFor (hardenedKernelFor kernel overrides); diff --git a/pkgs/top-level/php-packages.nix b/pkgs/top-level/php-packages.nix index 238fcd0dd8d75..7377f60da7d38 100644 --- a/pkgs/top-level/php-packages.nix +++ b/pkgs/top-level/php-packages.nix @@ -16,7 +16,7 @@ , gettext , gmp , html-tidy -, icu64 +, icu73 , libffi , libiconv , libkrb5 @@ -443,7 +443,7 @@ in { } { name = "intl"; - buildInputs = [ icu64 ]; + buildInputs = [ icu73 ]; } { name = "ldap"; diff --git a/pkgs/top-level/python-aliases.nix b/pkgs/top-level/python-aliases.nix index 268595503756b..a10f40d615f62 100644 --- a/pkgs/top-level/python-aliases.nix +++ b/pkgs/top-level/python-aliases.nix @@ -226,6 +226,7 @@ mapAliases ({ hglib = python-hglib; # added 2023-10-13 homeassistant-bring-api = bring-api; # added 2024-04-11 homeassistant-pyozw = throw "homeassistant-pyozw has been removed, as it was packaged for home-assistant which has removed it as a dependency."; # added 2024-01-05 + htmllaundry = throw "htmllaundry has been removed because it is abandoned"; # added 2024-06-04 HTSeq = htseq; # added 2023-02-19 hyperkitty = throw "Please use pkgs.mailmanPackages.hyperkitty"; # added 2022-04-29 ihatemoney = throw "ihatemoney was removed because it is no longer maintained downstream"; # added 2023-04-08 diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index 42562f4c3244c..666dc7430b29b 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -787,10 +787,16 @@ self: super: with self; { asdf = callPackage ../development/python-modules/asdf { }; + asdf-astropy = callPackage ../development/python-modules/asdf-astropy { }; + + asdf-coordinates-schemas = callPackage ../development/python-modules/asdf-coordinates-schemas { }; + asdf-standard = callPackage ../development/python-modules/asdf-standard { }; asdf-transform-schemas = callPackage ../development/python-modules/asdf-transform-schemas { }; + asdf-wcs-schemas = callPackage ../development/python-modules/asdf-wcs-schemas { }; + ase = callPackage ../development/python-modules/ase { }; asf-search = callPackage ../development/python-modules/asf-search { }; @@ -1514,6 +1520,8 @@ self: super: with self; { bentoml = callPackage ../development/python-modules/bentoml { }; + berkeleydb = callPackage ../development/python-modules/berkeleydb { }; + bespon = callPackage ../development/python-modules/bespon { }; betacode = callPackage ../development/python-modules/betacode { }; @@ -2099,6 +2107,8 @@ self: super: with self; { chameleon = callPackage ../development/python-modules/chameleon { }; + changefinder = callPackage ../development/python-modules/changefinder { }; + channels = callPackage ../development/python-modules/channels { }; channels-redis = callPackage ../development/python-modules/channels-redis { }; @@ -2957,6 +2967,8 @@ self: super: with self; { deltachat = callPackage ../development/python-modules/deltachat { }; + deltachat2 = callPackage ../development/python-modules/deltachat2 { }; + deluge-client = callPackage ../development/python-modules/deluge-client { }; demes = callPackage ../development/python-modules/demes { }; @@ -3395,6 +3407,8 @@ self: super: with self; { django-sites = callPackage ../development/python-modules/django-sites { }; + django-soft-delete = callPackage ../development/python-modules/django-soft-delete { }; + django-statici18n = callPackage ../development/python-modules/django-statici18n { }; django-storages = callPackage ../development/python-modules/django-storages { }; @@ -4035,6 +4049,8 @@ self: super: with self; { exitcode = callPackage ../development/python-modules/exitcode { }; + extension-helpers = callPackage ../development/python-modules/extension-helpers { }; + extract-msg = callPackage ../development/python-modules/extract-msg { }; extractcode = callPackage ../development/python-modules/extractcode { }; @@ -5271,6 +5287,8 @@ self: super: with self; { gviz-api = callPackage ../development/python-modules/gviz-api { }; + gwcs = callPackage ../development/python-modules/gwcs { }; + gym = callPackage ../development/python-modules/gym { }; gym-notices = callPackage ../development/python-modules/gym-notices { }; @@ -5341,6 +5359,8 @@ self: super: with self; { hatch-jupyter-builder = callPackage ../development/python-modules/hatch-jupyter-builder { }; + hatch-odoo = callPackage ../development/python-modules/hatch-odoo { }; + hatch-vcs = callPackage ../development/python-modules/hatch-vcs { }; hatch-nodejs-version = callPackage ../development/python-modules/hatch-nodejs-version { }; @@ -5522,8 +5542,6 @@ self: super: with self; { htmldate = callPackage ../development/python-modules/htmldate { }; - htmllaundry = callPackage ../development/python-modules/htmllaundry { }; - htmllistparse = callPackage ../development/python-modules/htmllistparse { }; htmlmin = callPackage ../development/python-modules/htmlmin { }; @@ -7027,8 +7045,6 @@ self: super: with self; { lnkparse3 = callPackage ../development/python-modules/lnkparse3 { }; - loadcredential = callPackage ../development/python-modules/loadcredential { }; - loca = callPackage ../development/python-modules/loca { }; localimport = callPackage ../development/python-modules/localimport { }; @@ -7293,6 +7309,8 @@ self: super: with self; { mathlibtools = callPackage ../development/python-modules/mathlibtools { }; + mathutils = callPackage ../development/python-modules/mathutils { }; + matlink-gpapi = callPackage ../development/python-modules/matlink-gpapi { }; matplotlib = callPackage ../development/python-modules/matplotlib { @@ -7762,6 +7780,8 @@ self: super: with self; { motionblinds = callPackage ../development/python-modules/motionblinds { }; + motionblindsble = callPackage ../development/python-modules/motionblindsble { }; + motioneye-client = callPackage ../development/python-modules/motioneye-client { }; moto = callPackage ../development/python-modules/moto { }; @@ -8802,6 +8822,8 @@ self: super: with self; { netdata = callPackage ../development/python-modules/netdata { }; + netdata-pandas = callPackage ../development/python-modules/netdata-pandas { }; + netdisco = callPackage ../development/python-modules/netdisco { }; nethsm = callPackage ../development/python-modules/nethsm { }; @@ -9774,6 +9796,8 @@ self: super: with self; { phonenumbers = callPackage ../development/python-modules/phonenumbers { }; + photutils = callPackage ../development/python-modules/photutils { }; + pkgutil-resolve-name = callPackage ../development/python-modules/pkgutil-resolve-name { }; pkg-about = callPackage ../development/python-modules/pkg-about { }; @@ -13580,6 +13604,8 @@ self: super: with self; { rubymarshal = callPackage ../development/python-modules/rubymarshal { }; + ruff-api = callPackage ../development/python-modules/ruff-api { }; + ruffus = callPackage ../development/python-modules/ruffus { }; rules = callPackage ../development/python-modules/rules { }; @@ -14836,6 +14862,11 @@ self: super: with self; { syncer = callPackage ../development/python-modules/syncer { }; + syndication-domination = toPythonModule (pkgs.syndication-domination.override { + enablePython = true; + python3Packages = self; + }); + synergy = callPackage ../development/python-modules/synergy { }; synologydsm-api = callPackage ../development/python-modules/synologydsm-api { }; @@ -17247,6 +17278,10 @@ self: super: with self; { xnd = callPackage ../development/python-modules/xnd { }; + xonsh = toPythonModule (pkgs.xonsh.override { + python3Packages = self; + }); + xpath-expressions = callPackage ../development/python-modules/xpath-expressions { }; xpybutil = callPackage ../development/python-modules/xpybutil { }; |