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-rw-r--r--pkgs/applications/science/biology/gatk/default.nix4
-rw-r--r--pkgs/applications/science/biology/iqtree/default.nix4
-rw-r--r--pkgs/applications/science/biology/picard-tools/default.nix4
-rw-r--r--pkgs/applications/science/biology/trimal/default.nix4
-rw-r--r--pkgs/applications/science/electronics/kicad/default.nix4
-rw-r--r--pkgs/applications/science/electronics/magic-vlsi/default.nix4
-rw-r--r--pkgs/applications/science/logic/cadical/default.nix4
-rw-r--r--pkgs/applications/science/logic/cbmc/default.nix4
-rw-r--r--pkgs/applications/science/logic/coq/default.nix4
-rw-r--r--pkgs/applications/science/logic/dafny/default.nix41
-rw-r--r--pkgs/applications/science/logic/dafny/deps.nix25
-rw-r--r--pkgs/applications/science/logic/lean4/default.nix4
-rw-r--r--pkgs/applications/science/logic/surelog/default.nix4
-rw-r--r--pkgs/applications/science/logic/uhdm/default.nix4
-rw-r--r--pkgs/applications/science/math/fricas/default.nix4
-rw-r--r--pkgs/applications/science/math/qalculate-gtk/default.nix4
-rw-r--r--pkgs/applications/science/math/qalculate-qt/default.nix4
-rw-r--r--pkgs/applications/science/math/wxmaxima/default.nix4
-rw-r--r--pkgs/applications/science/misc/root/default.nix12
-rw-r--r--pkgs/applications/science/robotics/qgroundcontrol/default.nix4
20 files changed, 78 insertions, 68 deletions
diff --git a/pkgs/applications/science/biology/gatk/default.nix b/pkgs/applications/science/biology/gatk/default.nix
index 41623bf640dda..50dc0613c743f 100644
--- a/pkgs/applications/science/biology/gatk/default.nix
+++ b/pkgs/applications/science/biology/gatk/default.nix
@@ -2,10 +2,10 @@
 
 stdenv.mkDerivation rec {
   pname = "gatk";
-  version = "4.5.0.0";
+  version = "4.6.0.0";
   src = fetchzip {
     url = "https://github.com/broadinstitute/gatk/releases/download/${version}/gatk-${version}.zip";
-    sha256 = "sha256-c3YZsSCjZY75jooiqtc8x/xsWTvYm9labUcOydDlSRQ=";
+    sha256 = "sha256-AwGRkgVbG2gA4K1JG0WPr4v18JHG5YzYUKdJ2EJZX+Y=";
   };
 
   nativeBuildInputs = [ makeWrapper ];
diff --git a/pkgs/applications/science/biology/iqtree/default.nix b/pkgs/applications/science/biology/iqtree/default.nix
index 4dfbaa25b36a4..60827b8e3a685 100644
--- a/pkgs/applications/science/biology/iqtree/default.nix
+++ b/pkgs/applications/science/biology/iqtree/default.nix
@@ -10,13 +10,13 @@
 
 stdenv.mkDerivation rec {
   pname = "iqtree";
-  version = "2.3.4";
+  version = "2.3.5";
 
   src = fetchFromGitHub {
     owner = "iqtree";
     repo = "iqtree2";
     rev = "v${version}";
-    hash = "sha256-dnUFllqcABB3JDYoCwPGtIYD/h5lzX2XKOroDpijPpU=";
+    hash = "sha256-ld+9vPJRVHMEe5/igqRr6RkISY2ipfGkJFHDOSZuAmg=";
     fetchSubmodules = true;
   };
 
diff --git a/pkgs/applications/science/biology/picard-tools/default.nix b/pkgs/applications/science/biology/picard-tools/default.nix
index 880ea77e9d245..e8786fe4b9c0e 100644
--- a/pkgs/applications/science/biology/picard-tools/default.nix
+++ b/pkgs/applications/science/biology/picard-tools/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "picard-tools";
-  version = "3.1.1";
+  version = "3.2.0";
 
   src = fetchurl {
     url = "https://github.com/broadinstitute/picard/releases/download/${version}/picard.jar";
-    sha256 = "sha256-FcefUf0KwAEEn53XubrB2991ncsCMKicf20fJG6LurQ=";
+    sha256 = "sha256-4lj6Lj9fphzWeZ7I4HP0mpX73OrxY9imCXGyYZuG+kE=";
   };
 
   nativeBuildInputs = [ makeWrapper ];
diff --git a/pkgs/applications/science/biology/trimal/default.nix b/pkgs/applications/science/biology/trimal/default.nix
index b2ef121caa9a2..f822fe50b1648 100644
--- a/pkgs/applications/science/biology/trimal/default.nix
+++ b/pkgs/applications/science/biology/trimal/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "trimal";
-  version = "1.4.1";
+  version = "1.5.0";
 
   src = fetchFromGitHub {
     repo = pname;
     owner = "scapella";
     rev = "v${version}";
-    sha256 = "0isc7s3514di4z953xq53ncjkbi650sh4q9yyw5aag1n9hqnh7k0";
+    sha256 = "sha256-6GXirih7nY0eD2XS8aplLcYf53EeLuae+ewdUgBiKQQ=";
   };
 
   postUnpack = ''
diff --git a/pkgs/applications/science/electronics/kicad/default.nix b/pkgs/applications/science/electronics/kicad/default.nix
index 1cec011fae33f..4dd8fa743121b 100644
--- a/pkgs/applications/science/electronics/kicad/default.nix
+++ b/pkgs/applications/science/electronics/kicad/default.nix
@@ -7,7 +7,7 @@
 , callPackage
 , callPackages
 
-, gnome
+, adwaita-icon-theme
 , dconf
 , gtk3
 , wxGTK32
@@ -197,7 +197,7 @@ stdenv.mkDerivation rec {
   makeWrapperArgs = with passthru.libraries; [
     "--prefix XDG_DATA_DIRS : ${base}/share"
     "--prefix XDG_DATA_DIRS : ${hicolor-icon-theme}/share"
-    "--prefix XDG_DATA_DIRS : ${gnome.adwaita-icon-theme}/share"
+    "--prefix XDG_DATA_DIRS : ${adwaita-icon-theme}/share"
     "--prefix XDG_DATA_DIRS : ${gtk3}/share/gsettings-schemas/${gtk3.name}"
     "--prefix XDG_DATA_DIRS : ${gsettings-desktop-schemas}/share/gsettings-schemas/${gsettings-desktop-schemas.name}"
     # wrapGAppsHook3 did these two as well, no idea if it matters...
diff --git a/pkgs/applications/science/electronics/magic-vlsi/default.nix b/pkgs/applications/science/electronics/magic-vlsi/default.nix
index 0be742f76e3c6..28b1b91ae1a24 100644
--- a/pkgs/applications/science/electronics/magic-vlsi/default.nix
+++ b/pkgs/applications/science/electronics/magic-vlsi/default.nix
@@ -13,11 +13,11 @@
 
 stdenv.mkDerivation rec {
   pname = "magic-vlsi";
-  version = "8.3.483";
+  version = "8.3.486";
 
   src = fetchurl {
     url    = "http://opencircuitdesign.com/magic/archive/magic-${version}.tgz";
-    sha256 = "sha256-JyawlH/zUTJ7fGf63zHvZ3q8AYRwFELwh+63RN9IkBA=";
+    sha256 = "sha256-RLAA97roY41imjxehEFzF+peLmrS+rTQkVua+8dxKDY=";
   };
 
   nativeBuildInputs = [ python3 ];
diff --git a/pkgs/applications/science/logic/cadical/default.nix b/pkgs/applications/science/logic/cadical/default.nix
index 12b01dea1a3dd..6d49ef0ab3f63 100644
--- a/pkgs/applications/science/logic/cadical/default.nix
+++ b/pkgs/applications/science/logic/cadical/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "cadical";
-  version = "1.9.5";
+  version = "2.0.0";
 
   src = fetchFromGitHub {
     owner = "arminbiere";
     repo = "cadical";
     rev = "rel-${version}";
-    sha256 = "sha256-mAKuz8WjX+ywQ7Sw5hRMPftsbbilTlmQ9qZVowXxs28=";
+    sha256 = "sha256-qoeEM9SdpuFuBPeQlCzuhPLcJ+bMQkTUTGiT8QdU8rc=";
   };
 
   outputs = [ "out" "dev" "lib" ];
diff --git a/pkgs/applications/science/logic/cbmc/default.nix b/pkgs/applications/science/logic/cbmc/default.nix
index 0a81b2a09ef1d..c980e84f9d9f6 100644
--- a/pkgs/applications/science/logic/cbmc/default.nix
+++ b/pkgs/applications/science/logic/cbmc/default.nix
@@ -13,13 +13,13 @@
 
 stdenv.mkDerivation rec {
   pname = "cbmc";
-  version = "6.0.0";
+  version = "6.0.1";
 
   src = fetchFromGitHub {
     owner = "diffblue";
     repo = pname;
     rev = "${pname}-${version}";
-    sha256 = "sha256-mPRkkKN7Hz9Qi6a3fEwVFh7a9OaBFcksNw9qwNOarao=";
+    sha256 = "sha256-7syRpCNL7TRZoJaNrmAdahNy7IyovyniYyOwD/lzhuw=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/applications/science/logic/coq/default.nix b/pkgs/applications/science/logic/coq/default.nix
index 8f0f88461e653..d07ebd90ec7d1 100644
--- a/pkgs/applications/science/logic/coq/default.nix
+++ b/pkgs/applications/science/logic/coq/default.nix
@@ -11,7 +11,7 @@
 , ocamlPackages_4_14
 , ncurses
 , buildIde ? null # default is true for Coq < 8.14 and false for Coq >= 8.14
-, glib, gnome, wrapGAppsHook3, makeDesktopItem, copyDesktopItems
+, glib, adwaita-icon-theme, wrapGAppsHook3, makeDesktopItem, copyDesktopItems
 , csdp ? null
 , version, coq-version ? null
 }@args:
@@ -154,7 +154,7 @@ self = stdenv.mkDerivation {
   buildInputs = [ ncurses ]
     ++ optionals buildIde
       (if coqAtLeast "8.10"
-       then [ ocamlPackages.lablgtk3-sourceview3 glib gnome.adwaita-icon-theme ]
+       then [ ocamlPackages.lablgtk3-sourceview3 glib adwaita-icon-theme ]
        else [ ocamlPackages.lablgtk ])
   ;
 
diff --git a/pkgs/applications/science/logic/dafny/default.nix b/pkgs/applications/science/logic/dafny/default.nix
index f85e6cf22879d..93ae5c92b32fe 100644
--- a/pkgs/applications/science/logic/dafny/default.nix
+++ b/pkgs/applications/science/logic/dafny/default.nix
@@ -8,32 +8,37 @@
 
 buildDotnetModule rec {
   pname = "Dafny";
-  version = "4.6.0";
+  version = "4.7.0";
 
   src = fetchFromGitHub {
     owner = "dafny-lang";
     repo = "dafny";
     rev = "v${version}";
-    hash = "sha256-3t0drxM7PZzrLbxBKYa6Gja2u6GK6Pc+ejoswag3P3k=";
+    hash = "sha256-XoSk08TVv17YyuTsRJ25e6bwSwKIF2+HjF5nFaul8+M=";
   };
 
-  postPatch = ''
-    cp ${
-      writeScript "fake-gradlew-for-dafny" ''
-        mkdir -p build/libs/
-        javac $(find -name "*.java" | grep "^./src/main") -d classes
-        jar cf build/libs/DafnyRuntime-${version}.jar -C classes dafny
-      ''} Source/DafnyRuntime/DafnyRuntimeJava/gradlew
+  postPatch =
+    let
+      # This file wasn't updated between 4.6.0 and 4.7.0.
+      runtimeJarVersion = "4.6.0";
+    in
+    ''
+      cp ${
+        writeScript "fake-gradlew-for-dafny" ''
+          mkdir -p build/libs/
+          javac $(find -name "*.java" | grep "^./src/main") -d classes
+          jar cf build/libs/DafnyRuntime-${runtimeJarVersion}.jar -C classes dafny
+        ''} Source/DafnyRuntime/DafnyRuntimeJava/gradlew
 
-    # Needed to fix
-    # "error NETSDK1129: The 'Publish' target is not supported without
-    # specifying a target framework. The current project targets multiple
-    # frameworks, you must specify the framework for the published
-    # application."
-    substituteInPlace Source/DafnyRuntime/DafnyRuntime.csproj \
-      --replace TargetFrameworks TargetFramework \
-      --replace "netstandard2.0;net452" net6.0
-  '';
+      # Needed to fix
+      # "error NETSDK1129: The 'Publish' target is not supported without
+      # specifying a target framework. The current project targets multiple
+      # frameworks, you must specify the framework for the published
+      # application."
+      substituteInPlace Source/DafnyRuntime/DafnyRuntime.csproj \
+        --replace-warn TargetFrameworks TargetFramework \
+        --replace-warn "netstandard2.0;net452" net6.0
+    '';
 
   buildInputs = [ jdk11 ];
   nugetDeps = ./deps.nix;
diff --git a/pkgs/applications/science/logic/dafny/deps.nix b/pkgs/applications/science/logic/dafny/deps.nix
index 91fe5624ac7f7..0c96fca4ec539 100644
--- a/pkgs/applications/science/logic/dafny/deps.nix
+++ b/pkgs/applications/science/logic/dafny/deps.nix
@@ -3,18 +3,19 @@
 
 { fetchNuGet }: [
   (fetchNuGet { pname = "Boogie"; version = "3.1.3"; sha256 = "0xzc7s0rjb8dhdkdf71g6pdsnyhbl534xpwd8gbx6g16a87iqx6i"; })
-  (fetchNuGet { pname = "Boogie.AbstractInterpretation"; version = "3.1.3"; sha256 = "0a7v2jkkbh59pyc5nz4avszm3dbmp4amkmr6lvn0gyc3hxgn8d3k"; })
-  (fetchNuGet { pname = "Boogie.BaseTypes"; version = "3.1.3"; sha256 = "1h94yl4ymhd2g14i5w8lnnh2zw7gx65qydzvv8cm8d5yn64gch63"; })
-  (fetchNuGet { pname = "Boogie.CodeContractsExtender"; version = "3.1.3"; sha256 = "0b1h1lz997lgyq34bx3ngnhgcrw8j4qvsa6iygb6bydxz7rirrf4"; })
-  (fetchNuGet { pname = "Boogie.Concurrency"; version = "3.1.3"; sha256 = "1aq0gdz1xkmp82c67vrmyvkncfbbj5zxrsg78lsmmi22h9qbkzm3"; })
-  (fetchNuGet { pname = "Boogie.Core"; version = "3.1.3"; sha256 = "0yhl272lv9lncjval2z7zl9wavlxx8bivj467zl2zzbrxw2k5wz8"; })
-  (fetchNuGet { pname = "Boogie.ExecutionEngine"; version = "3.1.3"; sha256 = "0p0zp329h6mddbswm3pdcyvy03y69vyznv11ph6bkpya21lsxqy7"; })
-  (fetchNuGet { pname = "Boogie.Graph"; version = "3.1.3"; sha256 = "1p8vb4x4iy7f0ycwb8f71j9a2ci8irwg3rvad2hg3rgbihbwp1qj"; })
-  (fetchNuGet { pname = "Boogie.Houdini"; version = "3.1.3"; sha256 = "06qlgi9f70r2w7w6h9qw3lx9dd4pbddpdplqjxi090rpry6dhrbz"; })
-  (fetchNuGet { pname = "Boogie.Model"; version = "3.1.3"; sha256 = "0fbvnrghaq17fdpjx12axxrrjp1mh99skaznmvxd1ylsqqnn4cbk"; })
-  (fetchNuGet { pname = "Boogie.Provers.SMTLib"; version = "3.1.3"; sha256 = "0x7gpc7m04in2gzdn4jgjphd2xjqrdfmh84wzwnwpvi5wyn869jc"; })
-  (fetchNuGet { pname = "Boogie.VCExpr"; version = "3.1.3"; sha256 = "0dyndhqz1yf9qnq9mw73g53rnz0xfbdbi3yk6pg7fdm1m3363h5p"; })
-  (fetchNuGet { pname = "Boogie.VCGeneration"; version = "3.1.3"; sha256 = "1bl83727zc1rhskx548p5pa27804n3f5i9n233jvcz6n6bfjn74k"; })
+  (fetchNuGet { pname = "Boogie.AbstractInterpretation"; version = "3.1.6"; sha256 = "1c6z13dz0sbkmk4ay64aihy7s7xlfdvhpcknxhw1m1b0yly5qj6b"; })
+  (fetchNuGet { pname = "Boogie.BaseTypes"; version = "3.1.6"; sha256 = "1hxcpc45f32g3jpaw7mg6k9qsppcb3p20wxv4d4dc3nz0r52lrmr"; })
+  (fetchNuGet { pname = "Boogie.CodeContractsExtender"; version = "3.1.6"; sha256 = "1qk7w7c40fpkvvarbgi1bkdcxpn12r0lqngpwwjw8i7nk84ni5gl"; })
+  (fetchNuGet { pname = "Boogie.Concurrency"; version = "3.1.6"; sha256 = "11981gfa0n4s214yilnxqhh1clr4l78iqlws6gv01z1n6rxgbyla"; })
+  (fetchNuGet { pname = "Boogie.Core"; version = "3.1.6"; sha256 = "0sgj6i1hvp90g2zfqs1aly500xnv3fq9d4cfgii5kpza8vgm7w4g"; })
+  (fetchNuGet { pname = "Boogie.ExecutionEngine"; version = "3.1.6"; sha256 = "08vxxwcnkykcngihkp0bvfwkgwxb3nnqjp5f1vz4bnw708xs0ydg"; })
+  (fetchNuGet { pname = "Boogie.Graph"; version = "3.1.6"; sha256 = "0fzj65pnky8i83jj2h9nszij25a46z68fy2sm3pxwlg678nmx2jz"; })
+  (fetchNuGet { pname = "Boogie.Houdini"; version = "3.1.6"; sha256 = "0lfljb9brnr79hp1f0ff6fcy51ml66pjj102jk4pqpmsjwvcjx43"; })
+  (fetchNuGet { pname = "Boogie.Model"; version = "3.1.6"; sha256 = "0546b27mxv97v7qilb1carbwip0q7sz9zz7sxizpww6yc3j8w8if"; })
+  (fetchNuGet { pname = "Boogie.Provers.LeanAuto"; version = "3.1.6"; sha256 = "1x1f35g0kxzhxvw4icmbvkik16py47j6h04gj0ckwbny9qmglaby"; })
+  (fetchNuGet { pname = "Boogie.Provers.SMTLib"; version = "3.1.6"; sha256 = "0mqlpwfxgv9dd773254rrbgbjb5mpa3xkvlq32ml752h36j8m2r9"; })
+  (fetchNuGet { pname = "Boogie.VCExpr"; version = "3.1.6"; sha256 = "0p7axpjn4qg191bs7b33zf9l336bdznvxp3305z2ssnkakjx247h"; })
+  (fetchNuGet { pname = "Boogie.VCGeneration"; version = "3.1.6"; sha256 = "05z2lr92hbllikv65gh7m3i879fnn6pjn2acf133sijx9b1jixdb"; })
   (fetchNuGet { pname = "CocoR"; version = "2014.12.24"; sha256 = "0ps8h7aawkcc1910qnh13llzb01pvgsjmg862pxp0p4wca2dn7a2"; })
   (fetchNuGet { pname = "JetBrains.Annotations"; version = "2021.1.0"; sha256 = "07pnhxxlgx8spmwmakz37nmbvgyb6yjrbrhad5rrn6y767z5r1gb"; })
   (fetchNuGet { pname = "MediatR"; version = "8.1.0"; sha256 = "0cqx7yfh998xhsfk5pr6229lcjcs1jxxyqz7dwskc9jddl6a2akp"; })
diff --git a/pkgs/applications/science/logic/lean4/default.nix b/pkgs/applications/science/logic/lean4/default.nix
index 2ec05098f4078..2c63edc1e7d49 100644
--- a/pkgs/applications/science/logic/lean4/default.nix
+++ b/pkgs/applications/science/logic/lean4/default.nix
@@ -10,13 +10,13 @@
 
 stdenv.mkDerivation (finalAttrs: {
   pname = "lean4";
-  version = "4.8.0";
+  version = "4.9.0";
 
   src = fetchFromGitHub {
     owner = "leanprover";
     repo = "lean4";
     rev = "v${finalAttrs.version}";
-    hash = "sha256-R75RrAQb/tRTtMvy/ddLl1KQaA7V71nocvjIS9geMrg=";
+    hash = "sha256-wi7outnKpz60to6Z7MSGAKK6COxmpJo6iu6Re86jqlo=";
   };
 
   postPatch = ''
diff --git a/pkgs/applications/science/logic/surelog/default.nix b/pkgs/applications/science/logic/surelog/default.nix
index 7b4c85fe9b215..6bca5acb796f6 100644
--- a/pkgs/applications/science/logic/surelog/default.nix
+++ b/pkgs/applications/science/logic/surelog/default.nix
@@ -16,13 +16,13 @@
 
 stdenv.mkDerivation (finalAttrs: {
   pname = "surelog";
-  version = "1.82";
+  version = "1.83";
 
   src = fetchFromGitHub {
     owner = "chipsalliance";
     repo = finalAttrs.pname;
     rev = "v${finalAttrs.version}";
-    hash = "sha256-iW2mQPmKfbAWaiEURyVly5IjJ3YpXjVBkm/UbUuwb6k=";
+    hash = "sha256-V4LmW4ca6KfugOu0XnGwutRqWR/9K6ESokHOB2yAVag=";
     fetchSubmodules = false;  # we use all dependencies from nix
   };
 
diff --git a/pkgs/applications/science/logic/uhdm/default.nix b/pkgs/applications/science/logic/uhdm/default.nix
index 182f6eb81eeb2..50850d4dbf82e 100644
--- a/pkgs/applications/science/logic/uhdm/default.nix
+++ b/pkgs/applications/science/logic/uhdm/default.nix
@@ -10,13 +10,13 @@
 stdenv.mkDerivation (finalAttrs: {
   pname = "UHDM";
   # When updating this package, also consider updating science/logic/surelog
-  version = "1.82";
+  version = "1.83";
 
   src = fetchFromGitHub {
     owner = "chipsalliance";
     repo = finalAttrs.pname;
     rev = "v${finalAttrs.version}";
-    hash = "sha256-sl83l6nLN/bluED5bnFShviD1Vv8hmRazxIcLUg/ego=";
+    hash = "sha256-va8qAzsg589C6rLmG1uIMDr4X30qpBgRO1ZVKdEs5ok=";
     fetchSubmodules = false;  # we use all dependencies from nix
   };
 
diff --git a/pkgs/applications/science/math/fricas/default.nix b/pkgs/applications/science/math/fricas/default.nix
index 9f0b87f011a10..43a00a5e1fbac 100644
--- a/pkgs/applications/science/math/fricas/default.nix
+++ b/pkgs/applications/science/math/fricas/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "fricas";
-  version = "1.3.10";
+  version = "1.3.11";
 
   src = fetchFromGitHub {
     owner = "fricas";
     repo = "fricas";
     rev = version;
-    sha256 = "sha256-T1xDndDnHq/hmhTWWO3Eu0733u8+C8sJMCF6pbLU2GI=";
+    sha256 = "sha256-EX/boSs6rK4RrJ5W6Rd0TSHsbQsNiFI1evFuNPBMeu8=";
   };
 
   buildInputs = [ sbcl libX11 libXpm libICE libSM libXt libXau libXdmcp ];
diff --git a/pkgs/applications/science/math/qalculate-gtk/default.nix b/pkgs/applications/science/math/qalculate-gtk/default.nix
index e4fc506516fdd..a27d7c1ffdb6f 100644
--- a/pkgs/applications/science/math/qalculate-gtk/default.nix
+++ b/pkgs/applications/science/math/qalculate-gtk/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation (finalAttrs: {
   pname = "qalculate-gtk";
-  version = "5.1.0";
+  version = "5.2.0";
 
   src = fetchFromGitHub {
     owner = "qalculate";
     repo = "qalculate-gtk";
     rev = "v${finalAttrs.version}";
-    hash = "sha256-yI+8TrNZJt4eJnDX5mk6RozBe2ZeP7sTyAjsgiYQPck=";
+    hash = "sha256-vH4GZaeQ6Ji9aWh8R5B6PE2fBBW7KTyCsFkpgHu6yg8=";
   };
 
   hardeningDisable = [ "format" ];
diff --git a/pkgs/applications/science/math/qalculate-qt/default.nix b/pkgs/applications/science/math/qalculate-qt/default.nix
index 3c4e19d56ebd7..ba47acb80e03f 100644
--- a/pkgs/applications/science/math/qalculate-qt/default.nix
+++ b/pkgs/applications/science/math/qalculate-qt/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation (finalAttrs: {
   pname = "qalculate-qt";
-  version = "5.1.0";
+  version = "5.2.0";
 
   src = fetchFromGitHub {
     owner = "qalculate";
     repo = "qalculate-qt";
     rev = "v${finalAttrs.version}";
-    hash = "sha256-gJfIC5HdA10gb/Dh/yhJbkCZfhUnN0zihqyfDjPv6ow=";
+    hash = "sha256-suJUPeWLX+da0lQdvsDgSBRCBYmog+s4+n/w0PnPijs=";
   };
 
   nativeBuildInputs = [ qmake intltool pkg-config qttools wrapQtAppsHook ];
diff --git a/pkgs/applications/science/math/wxmaxima/default.nix b/pkgs/applications/science/math/wxmaxima/default.nix
index db2ff0c4a8444..2a6225eab7653 100644
--- a/pkgs/applications/science/math/wxmaxima/default.nix
+++ b/pkgs/applications/science/math/wxmaxima/default.nix
@@ -6,7 +6,7 @@
 , gettext
 , maxima
 , wxGTK
-, gnome
+, adwaita-icon-theme
 , glib
 }:
 
@@ -25,7 +25,7 @@ stdenv.mkDerivation (finalAttrs:{
     wxGTK
     maxima
     # So it won't embed svg files into headers.
-    gnome.adwaita-icon-theme
+    adwaita-icon-theme
     # So it won't crash under Sway.
     glib
   ];
diff --git a/pkgs/applications/science/misc/root/default.nix b/pkgs/applications/science/misc/root/default.nix
index ded47a661a21a..5d01a33e5dcc4 100644
--- a/pkgs/applications/science/misc/root/default.nix
+++ b/pkgs/applications/science/misc/root/default.nix
@@ -56,7 +56,7 @@
 
 stdenv.mkDerivation rec {
   pname = "root";
-  version = "6.32.00";
+  version = "6.32.02";
 
   passthru = {
     tests = import ./tests { inherit callPackage; };
@@ -64,12 +64,14 @@ stdenv.mkDerivation rec {
 
   src = fetchurl {
     url = "https://root.cern.ch/download/root_v${version}.source.tar.gz";
-    hash = "sha256-EvIDaBpZBBxHTOlSN2Hm8OiGGzvueN9feZqNtVGJ5dI=";
+    hash = "sha256-PQ92vwWFfhgHzPssngFPUlvLYl+UojcLRV9LFklhYC0=";
   };
 
   clad_src = fetchgit {
     url = "https://github.com/vgvassilev/clad";
-    rev = "refs/tags/v1.5"; # Make sure that this is the same tag as in the ROOT build files!
+    # Make sure that this is the same tag as in the ROOT build files!
+    # https://github.com/root-project/root/blob/master/interpreter/cling/tools/plugins/clad/CMakeLists.txt#L76
+    rev = "refs/tags/v1.5";
     hash = "sha256-s0DbHfLthv51ZICnTd30O4qG/DyZPk5tADeu3bBRoOw=";
   };
 
@@ -166,7 +168,6 @@ stdenv.mkDerivation rec {
     "-Dmysql=OFF"
     "-Dpgsql=OFF"
     "-Dsqlite=OFF"
-    "-Dtmva-pymva=OFF"
     "-Dvdt=OFF"
   ]
   ++ lib.optional (stdenv.cc.libc != null) "-DC_INCLUDE_DIRS=${lib.getDev stdenv.cc.libc}/include"
@@ -222,6 +223,9 @@ stdenv.mkDerivation rec {
     ]}"
   '';
 
+  # error: aligned allocation function of type 'void *(std::size_t, std::align_val_t)' is only available on macOS 10.13 or newer
+  CXXFLAGS = lib.optional (stdenv.hostPlatform.system == "x86_64-darwin") "-faligned-allocation";
+
   # To use the debug information on the fly (without installation)
   # add the outPath of root.debug into NIX_DEBUG_INFO_DIRS (in PATH-like format)
   # and make sure that gdb from Nixpkgs can be found in PATH.
diff --git a/pkgs/applications/science/robotics/qgroundcontrol/default.nix b/pkgs/applications/science/robotics/qgroundcontrol/default.nix
index 25b1f4e5d5ce6..a999a719e2e40 100644
--- a/pkgs/applications/science/robotics/qgroundcontrol/default.nix
+++ b/pkgs/applications/science/robotics/qgroundcontrol/default.nix
@@ -4,7 +4,7 @@
 
 stdenv.mkDerivation rec {
   pname = "qgroundcontrol";
-  version = "4.3.0";
+  version = "4.4.0";
 
   propagatedBuildInputs = [
     qtbase qtcharts qtlocation qtserialport qtsvg qtquickcontrols2
@@ -67,7 +67,7 @@ stdenv.mkDerivation rec {
     owner = "mavlink";
     repo = pname;
     rev = "v${version}";
-    sha256 = "sha256-a0+cpT413qi88PvaWQPxKABHfK7vbPE7B42n84n/SAk=";
+    sha256 = "sha256-LKERjHoIgJ4cF1MjB5nVW3FB/DrmKP4Xj58avsDobhc=";
     fetchSubmodules = true;
   };