diff options
Diffstat (limited to 'pkgs/applications/science')
23 files changed, 46 insertions, 23 deletions
diff --git a/pkgs/applications/science/astronomy/celestia/default.nix b/pkgs/applications/science/astronomy/celestia/default.nix index 674aa666b7e64..fe6a3a41a236c 100644 --- a/pkgs/applications/science/astronomy/celestia/default.nix +++ b/pkgs/applications/science/astronomy/celestia/default.nix @@ -44,7 +44,8 @@ stdenv.mkDerivation { sha256 = "1i1lvhbgllsh2z8i6jj4mvrjak4a7r69psvk7syw03s4p7670mfk"; }; - buildInputs = [ freeglut gtk2 gtkglext libjpeg_turbo libtheora libXmu mesa pkgconfig lua + nativeBuildInputs = [ pkgconfig ]; + buildInputs = [ freeglut gtk2 gtkglext libjpeg_turbo libtheora libXmu mesa lua perl autoreconfHook ]; patchPhase = '' diff --git a/pkgs/applications/science/astronomy/xplanet/default.nix b/pkgs/applications/science/astronomy/xplanet/default.nix index ca5bbd4882c14..7abd83b6dc124 100644 --- a/pkgs/applications/science/astronomy/xplanet/default.nix +++ b/pkgs/applications/science/astronomy/xplanet/default.nix @@ -9,7 +9,8 @@ stdenv.mkDerivation rec { sha256 = "0hml2v228wi2r61m1pgka7h96rl92b6apk0iigm62miyp4mp9ys4"; }; - buildInputs = [ pkgconfig freetype pango libpng libtiff giflib libjpeg netpbm ]; + nativeBuildInputs = [ pkgconfig ]; + buildInputs = [ freetype pango libpng libtiff giflib libjpeg netpbm ]; patches = [ ./giflib.patch diff --git a/pkgs/applications/science/chemistry/gwyddion/default.nix b/pkgs/applications/science/chemistry/gwyddion/default.nix index b98af36604a39..80115f4f02225 100644 --- a/pkgs/applications/science/chemistry/gwyddion/default.nix +++ b/pkgs/applications/science/chemistry/gwyddion/default.nix @@ -9,7 +9,8 @@ stdenv.mkDerivation { url = "http://sourceforge.net/projects/gwyddion/files/gwyddion/2.48/gwyddion-2.48.tar.xz"; sha256 = "119iw58ac2wn4cas6js8m7r1n4gmmkga6b1y711xzcyjp9hshgwx"; }; - buildInputs = [ gtk2 pkgconfig ]; + nativeBuildInputs = [ pkgconfig ]; + buildInputs = [ gtk2 ]; meta = { homepage = http://gwyddion.net/; diff --git a/pkgs/applications/science/electronics/adms/default.nix b/pkgs/applications/science/electronics/adms/default.nix index d4ec974007cfc..99b7ef79594f0 100644 --- a/pkgs/applications/science/electronics/adms/default.nix +++ b/pkgs/applications/science/electronics/adms/default.nix @@ -12,7 +12,8 @@ stdenv.mkDerivation rec { sha256 = "1pcwq5khzdq4x33lid9hq967gv78dr5i4f2sk8m8rwkfqb9vdzrg"; }; - buildInputs = [ autoreconfHook flex bison gperf libxml2 perl gd perlPackages.XMLLibXML ]; + nativeBuildInputs = [ autoreconfHook ]; + buildInputs = [ flex bison gperf libxml2 perl gd perlPackages.XMLLibXML ]; configureFlags = [ "--enable-maintainer-mode" ]; meta = { diff --git a/pkgs/applications/science/electronics/geda/default.nix b/pkgs/applications/science/electronics/geda/default.nix index b8406c3255ccc..e080569e56fb2 100644 --- a/pkgs/applications/science/electronics/geda/default.nix +++ b/pkgs/applications/science/electronics/geda/default.nix @@ -10,7 +10,8 @@ stdenv.mkDerivation rec { }; configureFlags = "--disable-update-xdg-database"; - buildInputs = [ pkgconfig guile gtk2 flex gawk perl ]; + nativeBuildInputs = [ pkgconfig ]; + buildInputs = [ guile gtk2 flex gawk perl ]; meta = with stdenv.lib; { description = "Full GPL'd suite of Electronic Design Automation tools"; diff --git a/pkgs/applications/science/electronics/gerbv/default.nix b/pkgs/applications/science/electronics/gerbv/default.nix index 7cdcbb7fd1977..c0821c8a9ab99 100644 --- a/pkgs/applications/science/electronics/gerbv/default.nix +++ b/pkgs/applications/science/electronics/gerbv/default.nix @@ -10,7 +10,8 @@ stdenv.mkDerivation rec { sha256 = "00jn1xhf6kblxc5gac1wvk8zm12fy6sk81nj3jwdag0z6wk3z446"; }; - buildInputs = [ pkgconfig gettext libtool automake autoconf cairo gtk2 autoreconfHook ]; + nativeBuildInputs = [ autoreconfHook pkgconfig ]; + buildInputs = [ gettext libtool automake autoconf cairo gtk2 ]; configureFlags = ["--disable-update-desktop-database"]; diff --git a/pkgs/applications/science/electronics/gtkwave/default.nix b/pkgs/applications/science/electronics/gtkwave/default.nix index 657d20553b7f2..62d920d929acb 100644 --- a/pkgs/applications/science/electronics/gtkwave/default.nix +++ b/pkgs/applications/science/electronics/gtkwave/default.nix @@ -7,7 +7,8 @@ stdenv.mkDerivation rec { sha256 = "1akzf1sq8mwarrbrbz5chrvgwlsp444h5za8rg1dfyqk733s7piz"; }; - buildInputs = [ gtk2 gperf pkgconfig bzip2 tcl tk judy xz ]; + nativeBuildInputs = [ pkgconfig ]; + buildInputs = [ gtk2 gperf bzip2 tcl tk judy xz ]; configureFlags = [ "--with-tcl=${tcl}/lib" "--with-tk=${tk}/lib" "--enable-judy" ]; diff --git a/pkgs/applications/science/electronics/kicad/default.nix b/pkgs/applications/science/electronics/kicad/default.nix index 4ebc25fa4e8fa..5e8c4e39d4a2a 100644 --- a/pkgs/applications/science/electronics/kicad/default.nix +++ b/pkgs/applications/science/electronics/kicad/default.nix @@ -32,7 +32,8 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; # often fails on Hydra: fatal error: pcb_plot_params_lexer.h: No such file or directory - buildInputs = [ cmake mesa wxGTK zlib libX11 gettext glew cairo curl openssl boost pkgconfig doxygen ]; + nativeBuildInputs = [ pkgconfig ]; + buildInputs = [ cmake mesa wxGTK zlib libX11 gettext glew cairo curl openssl boost doxygen ]; # They say they only support installs to /usr or /usr/local, # so we have to handle this. diff --git a/pkgs/applications/science/electronics/pcb/default.nix b/pkgs/applications/science/electronics/pcb/default.nix index 1f51094340001..6b792310e8b42 100644 --- a/pkgs/applications/science/electronics/pcb/default.nix +++ b/pkgs/applications/science/electronics/pcb/default.nix @@ -9,7 +9,8 @@ stdenv.mkDerivation rec { sha256 = "0l6944hq79qsyp60i5ai02xwyp8l47q7xdm3js0jfkpf72ag7i42"; }; - buildInputs = [ pkgconfig gtk2 bison intltool flex netpbm imagemagick dbus xlibsWrapper mesa tcl shared_mime_info tk gnome2.gtkglext pangox_compat gd xorg.libXmu ]; + nativeBuildInputs = [ pkgconfig ]; + buildInputs = [ gtk2 bison intltool flex netpbm imagemagick dbus xlibsWrapper mesa tcl shared_mime_info tk gnome2.gtkglext pangox_compat gd xorg.libXmu ]; configureFlags = ["--disable-update-desktop-database"]; diff --git a/pkgs/applications/science/electronics/pulseview/default.nix b/pkgs/applications/science/electronics/pulseview/default.nix index 1d61ee2dd1622..f4d8d2bea5dbc 100644 --- a/pkgs/applications/science/electronics/pulseview/default.nix +++ b/pkgs/applications/science/electronics/pulseview/default.nix @@ -10,7 +10,8 @@ stdenv.mkDerivation rec { sha256 = "1f8f2342d5yam98mmcb8f9g2vslcwv486bmi4x45pxn68l82ky3q"; }; - buildInputs = [ pkgconfig cmake glib qt5.full boost libsigrok + nativeBuildInputs = [ pkgconfig ]; + buildInputs = [ cmake glib qt5.full boost libsigrok libsigrokdecode libserialport libzip udev libusb1 libftdi1 glibmm ]; diff --git a/pkgs/applications/science/electronics/qfsm/default.nix b/pkgs/applications/science/electronics/qfsm/default.nix index 0e2295479af32..6ca3f80cefd37 100644 --- a/pkgs/applications/science/electronics/qfsm/default.nix +++ b/pkgs/applications/science/electronics/qfsm/default.nix @@ -8,7 +8,8 @@ stdenv.mkDerivation rec { sha256 = "0rl7bc5cr29ng67yij4akciyid9z7npal812ys4c3m229vjvflrb"; }; - buildInputs = [ qt4 cmake graphviz pkgconfig ]; + nativeBuildInputs = [ pkgconfig ]; + buildInputs = [ qt4 cmake graphviz ]; patches = [ ./drop-hardcoded-prefix.patch diff --git a/pkgs/applications/science/electronics/xoscope/default.nix b/pkgs/applications/science/electronics/xoscope/default.nix index f26b13c5e32c7..829caacb55cb3 100644 --- a/pkgs/applications/science/electronics/xoscope/default.nix +++ b/pkgs/applications/science/electronics/xoscope/default.nix @@ -8,7 +8,8 @@ stdenv.mkDerivation rec { sha256 = "00xlvvqyw6l1ljbsx1vgx2v1jfh0xacz1a0yhq1dj6yxf5wh58x8"; }; - buildInputs = [ gtk2 pkgconfig ]; + nativeBuildInputs = [ pkgconfig ]; + buildInputs = [ gtk2 ]; # from: https://aur.archlinux.org/packages.php?ID=12140&detail=1 patches = [ ./gtkdepre.diff ]; diff --git a/pkgs/applications/science/logic/coq/8.4.nix b/pkgs/applications/science/logic/coq/8.4.nix index 34505192021c5..1f7ef571eaf90 100644 --- a/pkgs/applications/science/logic/coq/8.4.nix +++ b/pkgs/applications/science/logic/coq/8.4.nix @@ -27,7 +27,8 @@ stdenv.mkDerivation { sha256 = "1mpbj4yf36kpjg2v2sln12i8dzqn8rag6fd07hslj2lpm4qs4h55"; }; - buildInputs = [ pkgconfig ocaml findlib camlp5 ncurses lablgtk ]; + nativeBuildInputs = [ pkgconfig ]; + buildInputs = [ ocaml findlib camlp5 ncurses lablgtk ]; patches = [ ./configure.patch ]; diff --git a/pkgs/applications/science/logic/coq/HEAD.nix b/pkgs/applications/science/logic/coq/HEAD.nix index 209cba07c438f..968ea74e2960b 100644 --- a/pkgs/applications/science/logic/coq/HEAD.nix +++ b/pkgs/applications/science/logic/coq/HEAD.nix @@ -31,7 +31,8 @@ stdenv.mkDerivation { sha256 = "0sflrpp6x0ada0bjh67q1x65g88d179n3cawpwkp1pm4kw76g8x7"; }; - buildInputs = [ pkgconfig ocaml findlib camlp5 ncurses lablgtk ]; + nativeBuildInputs = [ pkgconfig ]; + buildInputs = [ ocaml findlib camlp5 ncurses lablgtk ]; postPatch = '' UNAME=$(type -tp uname) diff --git a/pkgs/applications/science/logic/coq/default.nix b/pkgs/applications/science/logic/coq/default.nix index 7378aedc1be7c..bf1623e28cf7b 100644 --- a/pkgs/applications/science/logic/coq/default.nix +++ b/pkgs/applications/science/logic/coq/default.nix @@ -89,7 +89,8 @@ self = stdenv.mkDerivation { inherit sha256; }; - buildInputs = [ pkgconfig ocamlPackages.ocaml ocamlPackages.findlib camlp5 ncurses ocamlPackages.lablgtk ]; + nativeBuildInputs = [ pkgconfig ]; + buildInputs = [ ocamlPackages.ocaml ocamlPackages.findlib camlp5 ncurses ocamlPackages.lablgtk ]; postPatch = '' UNAME=$(type -tp uname) diff --git a/pkgs/applications/science/logic/cvc4/default.nix b/pkgs/applications/science/logic/cvc4/default.nix index acde7f6ae43b4..df7eac02513c3 100644 --- a/pkgs/applications/science/logic/cvc4/default.nix +++ b/pkgs/applications/science/logic/cvc4/default.nix @@ -12,7 +12,8 @@ stdenv.mkDerivation rec { sha256 = "085bjrrm33rl5pwqx13af9sgni9cfbg70wag6lm08jj41ws411xs"; }; - buildInputs = [ gmp cln pkgconfig readline swig libantlr3c antlr3_4 boost jdk autoreconfHook python2 ]; + nativeBuildInputs = [ autoreconfHook pkgconfig ]; + buildInputs = [ gmp cln readline swig libantlr3c antlr3_4 boost jdk python2 ]; configureFlags = [ "--enable-language-bindings=c,c++,java" "--enable-gpl" diff --git a/pkgs/applications/science/logic/ott/default.nix b/pkgs/applications/science/logic/ott/default.nix index 293381d2888b9..b10ec814ff552 100644 --- a/pkgs/applications/science/logic/ott/default.nix +++ b/pkgs/applications/science/logic/ott/default.nix @@ -11,7 +11,8 @@ stdenv.mkDerivation rec { sha256 = "0i8ad1yrz9nrrgpi8db4z0aii5s0sy35mmzdfw5nq183mvbx8qqd"; }; - buildInputs = [ pkgconfig ocaml camlp5 ]; + nativeBuildInputs = [ pkgconfig ]; + buildInputs = [ ocaml camlp5 ]; installPhase = '' mkdir -p $out/bin diff --git a/pkgs/applications/science/logic/prooftree/default.nix b/pkgs/applications/science/logic/prooftree/default.nix index 94b1d5907620f..b143fd9825057 100644 --- a/pkgs/applications/science/logic/prooftree/default.nix +++ b/pkgs/applications/science/logic/prooftree/default.nix @@ -9,7 +9,8 @@ stdenv.mkDerivation (rec { sha256 = "08yp66j05pdkdpv9xkfqymqy82mir5xbwfh9mkzhh219xkps4b4m"; }; - buildInputs = [ pkgconfig ocaml findlib camlp5 ncurses lablgtk ]; + nativeBuildInputs = [ pkgconfig ]; + buildInputs = [ ocaml findlib camlp5 ncurses lablgtk ]; dontAddPrefix = true; configureFlags = [ "--prefix" "$(out)" ]; diff --git a/pkgs/applications/science/logic/twelf/default.nix b/pkgs/applications/science/logic/twelf/default.nix index ca2422558e9a8..74f8875fcebeb 100644 --- a/pkgs/applications/science/logic/twelf/default.nix +++ b/pkgs/applications/science/logic/twelf/default.nix @@ -9,7 +9,8 @@ stdenv.mkDerivation rec { sha256 = "0fi1kbs9hrdrm1x4k13angpjasxlyd1gc3ys8ah54i75qbcd9c4i"; }; - buildInputs = [ pkgconfig smlnj rsync ]; + nativeBuildInputs = [ pkgconfig ]; + buildInputs = [ smlnj rsync ]; buildPhase = '' export SMLNJ_HOME=${smlnj} diff --git a/pkgs/applications/science/logic/yices/default.nix b/pkgs/applications/science/logic/yices/default.nix index 5e2bf8d26241b..aac72ba24f014 100644 --- a/pkgs/applications/science/logic/yices/default.nix +++ b/pkgs/applications/science/logic/yices/default.nix @@ -16,7 +16,8 @@ stdenv.mkDerivation rec { "--with-static-gmp-include-dir=${gmp-static.dev}/include" "--enable-mcsat" ]; - buildInputs = [ gmp-static gperf autoreconfHook libpoly ]; + nativeBuildInputs = [ autoreconfHook ]; + buildInputs = [ gmp-static gperf libpoly ]; enableParallelBuilding = true; doCheck = true; diff --git a/pkgs/applications/science/math/pspp/default.nix b/pkgs/applications/science/math/pspp/default.nix index e899548217f77..486a2e69d264e 100644 --- a/pkgs/applications/science/math/pspp/default.nix +++ b/pkgs/applications/science/math/pspp/default.nix @@ -10,7 +10,8 @@ stdenv.mkDerivation rec { sha256 = "1r8smr5057993h90nx0mdnff8nxw9x546zzh6qpy4h3xblp1la5s"; }; - buildInputs = [ libxml2 readline zlib perl cairo gtk3 gsl pkgconfig + nativeBuildInputs = [ pkgconfig ]; + buildInputs = [ libxml2 readline zlib perl cairo gtk3 gsl gtksourceview pango gettext ]; doCheck = false; diff --git a/pkgs/applications/science/misc/fityk/default.nix b/pkgs/applications/science/misc/fityk/default.nix index 1c1cac203f8b6..8d0336f582827 100644 --- a/pkgs/applications/science/misc/fityk/default.nix +++ b/pkgs/applications/science/misc/fityk/default.nix @@ -15,7 +15,8 @@ stdenv.mkDerivation { sha256 = "0kmrjjjwrh6xgw590awcd52b86kksmv6rfgih75zvpiavr1ygwsi"; }; - buildInputs = [ autoreconfHook wxGTK30 boost lua zlib bzip2 xylib readline + nativeBuildInputs = [ autoreconfHook ]; + buildInputs = [ wxGTK30 boost lua zlib bzip2 xylib readline gnuplot swig3 ]; meta = { diff --git a/pkgs/applications/science/misc/root/default.nix b/pkgs/applications/science/misc/root/default.nix index b220bb8a80ce4..ac04321ae0c4a 100644 --- a/pkgs/applications/science/misc/root/default.nix +++ b/pkgs/applications/science/misc/root/default.nix @@ -11,7 +11,8 @@ stdenv.mkDerivation rec { sha256 = "0nwg4bw02v6vahm2rwfaj7fzp3ffhjg5jk7h20il4246swhxw6s6"; }; - buildInputs = [ cmake pcre pkgconfig python2 zlib libxml2 lzma gsl ] + nativeBuildInputs = [ pkgconfig ]; + buildInputs = [ cmake pcre python2 zlib libxml2 lzma gsl ] ++ stdenv.lib.optionals (!stdenv.isDarwin) [ libX11 libXpm libXft libXext mesa ] ++ stdenv.lib.optionals (stdenv.isDarwin) [ Cocoa OpenGL ] ; |