diff options
Diffstat (limited to 'pkgs/development/compilers/cmdstan/default.nix')
-rw-r--r-- | pkgs/development/compilers/cmdstan/default.nix | 95 |
1 files changed, 0 insertions, 95 deletions
diff --git a/pkgs/development/compilers/cmdstan/default.nix b/pkgs/development/compilers/cmdstan/default.nix deleted file mode 100644 index a6b6833289b7..000000000000 --- a/pkgs/development/compilers/cmdstan/default.nix +++ /dev/null @@ -1,95 +0,0 @@ -{ lib -, stdenv -, fetchFromGitHub -, python3 -, stanc -, buildPackages -, runtimeShell -, runCommandCC -, cmdstan -}: - -stdenv.mkDerivation rec { - pname = "cmdstan"; - version = "2.35.0"; - - src = fetchFromGitHub { - owner = "stan-dev"; - repo = pname; - rev = "v${version}"; - fetchSubmodules = true; - hash = "sha256-bmzkXbR4KSnpfXjs2MAx8mbNSbNrIWDP/O8S+JGWrcg="; - }; - - postPatch = '' - substituteInPlace stan/lib/stan_math/make/libraries \ - --replace "/usr/bin/env bash" "bash" - ''; - - nativeBuildInputs = [ - python3 - stanc - ]; - - preConfigure = '' - patchShebangs test-all.sh runCmdStanTests.py stan/ - '' - # Fix inclusion of hardcoded paths in PCH files, by building in the store. - + '' - mkdir -p $out/opt - cp -R . $out/opt/cmdstan - cd $out/opt/cmdstan - mkdir -p bin - ln -s ${buildPackages.stanc}/bin/stanc bin/stanc - ''; - - makeFlags = [ - "build" - ] ++ lib.optionals stdenv.isDarwin [ - "arch=${stdenv.hostPlatform.darwinArch}" - ]; - - # Disable inclusion of timestamps in PCH files when using Clang. - env.CXXFLAGS = lib.optionalString stdenv.cc.isClang "-Xclang -fno-pch-timestamp"; - - enableParallelBuilding = true; - - installPhase = '' - runHook preInstall - - mkdir -p $out/bin - ln -s $out/opt/cmdstan/bin/stanc $out/bin/stanc - ln -s $out/opt/cmdstan/bin/stansummary $out/bin/stansummary - cat > $out/bin/stan <<EOF - #!${runtimeShell} - make -C $out/opt/cmdstan "\$(realpath "\$1")" - EOF - chmod a+x $out/bin/stan - - runHook postInstall - ''; - - passthru.tests = { - test = runCommandCC "cmdstan-test" { } '' - cp -R ${cmdstan}/opt/cmdstan cmdstan - chmod -R +w cmdstan - cd cmdstan - ./runCmdStanTests.py -j$NIX_BUILD_CORES src/test/interface - touch $out - ''; - }; - - meta = with lib; { - description = "Command-line interface to Stan"; - longDescription = '' - Stan is a probabilistic programming language implementing full Bayesian - statistical inference with MCMC sampling (NUTS, HMC), approximate Bayesian - inference with Variational inference (ADVI) and penalized maximum - likelihood estimation with Optimization (L-BFGS). - ''; - homepage = "https://mc-stan.org/interfaces/cmdstan.html"; - license = licenses.bsd3; - maintainers = with maintainers; [ wegank ]; - platforms = platforms.unix; - }; -} |