diff options
Diffstat (limited to 'pkgs/development/libraries/science')
4 files changed, 6 insertions, 37 deletions
diff --git a/pkgs/development/libraries/science/biology/EBTKS/default.nix b/pkgs/development/libraries/science/biology/EBTKS/default.nix deleted file mode 100644 index 7a6122fbc8db1..0000000000000 --- a/pkgs/development/libraries/science/biology/EBTKS/default.nix +++ /dev/null @@ -1,32 +0,0 @@ -{ lib, stdenv, fetchFromGitHub, cmake, libminc }: - -stdenv.mkDerivation rec { - pname = "EBTKS"; - version = "unstable-2017-09-23"; - - src = fetchFromGitHub { - owner = "BIC-MNI"; - repo = pname; - rev = "67e4e197d8a32d6462c9bdc7af44d64ebde4fb5c"; - sha256 = "1a1qw6i47fs1izx60l1ysabpmyx9j5sjnbdv8b47wi2xcc9i3hpq"; - }; - - # error: use of undeclared identifier 'finite'; did you mean 'isfinite'? - postPatch = '' - substituteInPlace templates/EBTKS/SimpleArray.h \ - --replace "#define FINITE(x) finite(x)" "#define FINITE(x) isfinite(x)" - ''; - - nativeBuildInputs = [ cmake ]; - buildInputs = [ libminc ]; - - cmakeFlags = [ "-DLIBMINC_DIR=${libminc}/lib/cmake" ]; - - meta = with lib; { - homepage = "https://github.com/BIC-MNI/${pname}"; - description = "Library for working with MINC files"; - maintainers = with maintainers; [ bcdarwin ]; - platforms = platforms.unix; - license = licenses.free; - }; -} diff --git a/pkgs/development/libraries/science/biology/htslib/default.nix b/pkgs/development/libraries/science/biology/htslib/default.nix index d89b6dbbe6794..8b1aa7d01e818 100644 --- a/pkgs/development/libraries/science/biology/htslib/default.nix +++ b/pkgs/development/libraries/science/biology/htslib/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "htslib"; - version = "1.19"; + version = "1.19.1"; src = fetchurl { url = "https://github.com/samtools/htslib/releases/download/${version}/${pname}-${version}.tar.bz2"; - sha256 = "sha256-h1HEDE+n0fI6aGTFsgpzdE+L5oI5U1rncpxffTlNBzY="; + sha256 = "sha256-Ii1001dPtnsVjGmIyYDuqrqKBlb15P+3a1+lfwNZM+w="; }; # perl is only used during the check phase. diff --git a/pkgs/development/libraries/science/math/mongoose/default.nix b/pkgs/development/libraries/science/math/mongoose/default.nix index 728dff9aa3e5f..df645809a4450 100644 --- a/pkgs/development/libraries/science/math/mongoose/default.nix +++ b/pkgs/development/libraries/science/math/mongoose/default.nix @@ -7,11 +7,11 @@ }: let - suitesparseVersion = "7.4.0"; + suitesparseVersion = "7.5.1"; in stdenv.mkDerivation { pname = "mongoose"; - version = "3.3.0"; + version = "3.3.1"; outputs = [ "bin" "out" "dev" ]; @@ -19,7 +19,7 @@ stdenv.mkDerivation { owner = "DrTimothyAldenDavis"; repo = "SuiteSparse"; rev = "v${suitesparseVersion}"; - hash = "sha256-oR/lISsa+0NGueJJyutswxOEQVl8MmSVgb/q3GMUCn4="; + hash = "sha256-6eC26rag9kZ1E4qJ5KY/dLXGld+EHP2OUpyikjXQhQk="; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/science/math/suitesparse/default.nix b/pkgs/development/libraries/science/math/suitesparse/default.nix index abc2ff9a37012..45ea5900e286d 100644 --- a/pkgs/development/libraries/science/math/suitesparse/default.nix +++ b/pkgs/development/libraries/science/math/suitesparse/default.nix @@ -41,6 +41,7 @@ stdenv.mkDerivation rec { ] ++ lib.optionals enableCuda [ cudaPackages.cuda_cudart.dev cudaPackages.cuda_cudart.lib + cudaPackages.cuda_cccl.dev cudaPackages.libcublas.dev cudaPackages.libcublas.lib ]; |