1 files changed, 18 insertions, 8 deletions
diff --git a/pkgs/development/python-modules/biopandas/default.nix b/pkgs/development/python-modules/biopandas/default.nix
index b947164f1d882..fcb3bbe926d14 100644
--- a/pkgs/development/python-modules/biopandas/default.nix
+++ b/pkgs/development/python-modules/biopandas/default.nix
@@ -7,9 +7,8 @@
   mmtf-python,
   numpy,
   pandas,
-  pynose,
   pytestCheckHook,
-  pythonRelaxDepsHook,
+  fetchpatch2,
 }:
 
 buildPythonPackage rec {
@@ -24,7 +23,21 @@ buildPythonPackage rec {
     hash = "sha256-1c78baBBsDyvAWrNx5mZI/Q75wyXv0DAwAdWm3EwX/I=";
   };
 
-  nativeBuildInputs = [ pythonRelaxDepsHook ];
+  patches = [
+    # Needed for below patch to apply properly
+    (fetchpatch2 {
+      name = "deprecate-mmtf-parsing.patch";
+      url = "https://github.com/BioPandas/biopandas/commit/7a1517dbe76f2c70da8edb35f90c9fa69254e726.patch?full_index=1";
+      hash = "sha256-RFtXFqUYl8GnZ319HsBwx5SUbfUDnR66Ppakdvtg/wI=";
+    })
+    # Remove nose as a dependency.
+    (fetchpatch2 {
+      name = "remove-nose.patch";
+      url = "https://github.com/BioPandas/biopandas/commit/67aa2f237c70c826cd9ab59d6ae114582da2112f.patch?full_index=1";
+      hash = "sha256-fVl57/vGuzlYX/MBZnma1ZFCVmIpjr1k8t3bUJnb/uI=";
+      excludes = [ "setup.py" ];
+    })
+  ];
 
   pythonRelaxDeps = [ "looseversion" ];
 
@@ -37,10 +50,7 @@ buildPythonPackage rec {
     looseversion
   ];
 
-  nativeCheckInputs = [
-    pynose
-    pytestCheckHook
-  ];
+  nativeCheckInputs = [ pytestCheckHook ];
 
   disabledTests = [
     # require network access
@@ -56,7 +66,7 @@ buildPythonPackage rec {
   meta = {
     description = "Working with molecular structures in pandas DataFrames";
     homepage = "https://github.com/BioPandas/biopandas";
-    changelog = "https://github.com/BioPandas/biopandas/releases/tag/${src.rev}";
+    changelog = "https://github.com/BioPandas/biopandas/releases/tag/${lib.removePrefix "refs/tags/" src.rev}";
     license = lib.licenses.bsd3;
     maintainers = with lib.maintainers; [ natsukium ];
   };