1 files changed, 15 insertions, 12 deletions
diff --git a/pkgs/development/python-modules/biopython/default.nix b/pkgs/development/python-modules/biopython/default.nix
index 2ec814f56aef0..051f66845dec0 100644
--- a/pkgs/development/python-modules/biopython/default.nix
+++ b/pkgs/development/python-modules/biopython/default.nix
@@ -1,9 +1,10 @@
-{ lib
-, buildPythonPackage
-, fetchPypi
-, pythonOlder
-, setuptools
-, numpy
+{
+  lib,
+  buildPythonPackage,
+  fetchPypi,
+  pythonOlder,
+  setuptools,
+  numpy,
 }:
 
 buildPythonPackage rec {
@@ -18,15 +19,17 @@ buildPythonPackage rec {
     hash = "sha256-eOa/t43mMDQDev01/nfLbgqeW2Jwa+z3in2SKxbtg/c=";
   };
 
-  nativeBuildInputs = [
-    setuptools
+  patches = [
+    # cherry-picked from https://github.com/biopython/biopython/commit/3f9bda7ef44f533dadbaa0de29ac21929bc0b2f1
+    # fixes SeqXMLIO parser to process all data. remove on next update
+    ./close_parser_on_time.patch
   ];
 
-  propagatedBuildInputs = [ numpy ];
+  build-system = [ setuptools ];
 
-  pythonImportsCheck = [
-    "Bio"
-  ];
+  dependencies = [ numpy ];
+
+  pythonImportsCheck = [ "Bio" ];
 
   checkPhase = ''
     runHook preCheck