diff options
Diffstat (limited to 'pkgs/development/python-modules/freud/default.nix')
| -rw-r--r-- | pkgs/development/python-modules/freud/default.nix | 93 |
1 files changed, 53 insertions, 40 deletions
diff --git a/pkgs/development/python-modules/freud/default.nix b/pkgs/development/python-modules/freud/default.nix index e5b7767343676..a681bd1f14b13 100644 --- a/pkgs/development/python-modules/freud/default.nix +++ b/pkgs/development/python-modules/freud/default.nix @@ -1,34 +1,46 @@ -{ lib -, stdenv -, buildPythonPackage -, fetchFromGitHub -, cmake -, cython -, oldest-supported-numpy -, scikit-build -, setuptools -, tbb -, numpy -, rowan -, scipy -, pytest -, gsd -, matplotlib -, sympy +{ + lib, + stdenv, + buildPythonPackage, + fetchFromGitHub, + fetchpatch, + cmake, + cython, + oldest-supported-numpy, + scikit-build, + setuptools, + tbb, + numpy, + rowan, + scipy, + pytestCheckHook, + python, + gsd, + matplotlib, + sympy, }: buildPythonPackage rec { pname = "freud"; - version = "3.0.0"; + version = "3.1.0"; pyproject = true; src = fetchFromGitHub { owner = "glotzerlab"; repo = "freud"; - rev = "v${version}"; - hash = "sha256-aKh2Gub1vU/wzvWkCl8yzlIswp8CtR975USiCr6ijUI="; + rev = "refs/tags/v${version}"; + hash = "sha256-jlscEHQ1q4oqxE06NhVWCOlPRcjDcJVrvy4h6iYrkz0="; fetchSubmodules = true; }; + + patches = [ + # https://github.com/glotzerlab/freud/issues/1269 + (fetchpatch { + url = "https://github.com/glotzerlab/freud/commit/8f636e3815737945e45da5b9996b5f69df07c9a5.patch"; + hash = "sha256-PLorRrYj16oBWHYzXDq62kECzVTtyr+1Z20DJqTkXxg="; + }) + ]; + # Because we prefer to not `leaveDotGit`, we need to fool upstream into # thinking we left the .git files in the submodules, so cmake won't think we # didn't initialize them. Upstream doesn't support using the system wide @@ -39,6 +51,13 @@ buildPythonPackage rec { touch extern/{voro++,fsph,Eigen}/.git ''; + # Scipy still depends on numpy 1, and so we'd get 'package duplicates in + # closure' error if we'd use numpy_2 + postPatch = '' + substituteInPlace pyproject.toml \ + --replace-fail 'numpy>=2.0.0rc1' 'numpy' \ + ''; + nativeBuildInputs = [ cmake cython @@ -47,9 +66,7 @@ buildPythonPackage rec { setuptools ]; dontUseCmakeConfigure = true; - buildInputs = [ - tbb - ]; + buildInputs = [ tbb ]; propagatedBuildInputs = [ numpy @@ -58,33 +75,29 @@ buildPythonPackage rec { ]; nativeCheckInputs = [ - # Encountering circular ImportError issues with pytestCheckHook, see also: - # https://github.com/NixOS/nixpkgs/issues/255262 - pytest + pytestCheckHook gsd matplotlib sympy ]; - checkPhase = '' - runHook preCheck - - pytest - - runHook postCheck + disabledTests = lib.optionals stdenv.isAarch64 [ + # https://github.com/glotzerlab/freud/issues/961 + "test_docstring" + ]; + # On top of cd $out due to https://github.com/NixOS/nixpkgs/issues/255262 , + # we need to also copy the tests because otherwise pytest won't find them. + preCheck = '' + cp -R tests $out/${python.sitePackages}/freud/tests + cd $out ''; - # Some tests fail on aarch64. If we could have used pytestCheckHook, we would - # have disabled only the tests that fail with the disabledTests attribute. - # But that is not possible unfortunately. See upstream report for the - # failure: https://github.com/glotzerlab/freud/issues/961 - doCheck = !stdenv.isAarch64; pythonImportsCheck = [ "freud" ]; - meta = with lib; { + meta = { description = "Powerful, efficient particle trajectory analysis in scientific Python"; homepage = "https://github.com/glotzerlab/freud"; changelog = "https://github.com/glotzerlab/freud/blob/${src.rev}/ChangeLog.md"; - license = licenses.bsd3; - maintainers = with maintainers; [ doronbehar ]; + license = lib.licenses.bsd3; + maintainers = with lib.maintainers; [ doronbehar ]; }; } |