diff options
Diffstat (limited to 'pkgs/development/python-modules/numpy/default.nix')
| -rw-r--r-- | pkgs/development/python-modules/numpy/default.nix | 159 |
1 files changed, 85 insertions, 74 deletions
diff --git a/pkgs/development/python-modules/numpy/default.nix b/pkgs/development/python-modules/numpy/default.nix index c2d38cc31b248..f20bd095cf97f 100644 --- a/pkgs/development/python-modules/numpy/default.nix +++ b/pkgs/development/python-modules/numpy/default.nix @@ -1,30 +1,34 @@ -{ lib -, stdenv -, fetchPypi -, python -, pythonAtLeast -, pythonOlder -, buildPythonPackage -, writeTextFile - -# build-system -, cython -, gfortran -, meson-python -, mesonEmulatorHook -, pkg-config -, xcbuild - -# native dependencies -, blas -, lapack - -# tests -, hypothesis -, pytest-xdist -, pytestCheckHook -, setuptools -, typing-extensions +{ + lib, + stdenv, + fetchPypi, + python, + pythonAtLeast, + pythonOlder, + buildPythonPackage, + writeTextFile, + + # build-system + cython, + gfortran, + meson-python, + mesonEmulatorHook, + pkg-config, + xcbuild, + + # native dependencies + blas, + lapack, + + # Reverse dependency + sage, + + # tests + hypothesis, + pytest-xdist, + pytestCheckHook, + setuptools, + typing-extensions, }: assert (!blas.isILP64) && (!lapack.isILP64); @@ -32,7 +36,7 @@ assert (!blas.isILP64) && (!lapack.isILP64); let cfg = writeTextFile { name = "site.cfg"; - text = lib.generators.toINI {} { + text = lib.generators.toINI { } { ${blas.implementation} = { include_dirs = "${lib.getDev blas}/include:${lib.getDev lapack}/include"; library_dirs = "${blas}/lib:${lapack}/lib"; @@ -51,7 +55,8 @@ let }; }; }; -in buildPythonPackage rec { +in +buildPythonPackage rec { pname = "numpy"; version = "1.26.4"; pyproject = true; @@ -63,18 +68,17 @@ in buildPythonPackage rec { hash = "sha256-KgKrqe0S5KxOs+qUIcQgMBoMZGDZgw10qd+H76SRIBA="; }; - patches = [ - # Disable `numpy/core/tests/test_umath.py::TestComplexFunctions::test_loss_of_precision[complex256]` - # on x86_64-darwin because it fails under Rosetta 2 due to issues with trig functions and - # 80-bit long double complex numbers. - ./disable-failing-long-double-test-Rosetta-2.patch - ] - # We patch cpython/distutils to fix https://bugs.python.org/issue1222585 - # Patching of numpy.distutils is needed to prevent it from undoing the - # patch to distutils. - ++ lib.optionals python.hasDistutilsCxxPatch [ - ./numpy-distutils-C++.patch - ]; + patches = + [ + # Disable `numpy/core/tests/test_umath.py::TestComplexFunctions::test_loss_of_precision[complex256]` + # on x86_64-darwin because it fails under Rosetta 2 due to issues with trig functions and + # 80-bit long double complex numbers. + ./disable-failing-long-double-test-Rosetta-2.patch + ] + # We patch cpython/distutils to fix https://bugs.python.org/issue1222585 + # Patching of numpy.distutils is needed to prevent it from undoing the + # patch to distutils. + ++ lib.optionals python.hasDistutilsCxxPatch [ ./numpy-distutils-C++.patch ]; postPatch = '' # fails with multiple errors because we are not using the pinned setuptools version @@ -93,16 +97,15 @@ in buildPythonPackage rec { --replace-fail "meson-python>=0.15.0,<0.16.0" "meson-python" ''; - nativeBuildInputs = [ - cython - gfortran - meson-python - pkg-config - ] ++ lib.optionals (stdenv.isDarwin) [ - xcbuild.xcrun - ] ++ lib.optionals (!stdenv.buildPlatform.canExecute stdenv.hostPlatform) [ - mesonEmulatorHook - ]; + nativeBuildInputs = + [ + cython + gfortran + meson-python + pkg-config + ] + ++ lib.optionals (stdenv.isDarwin) [ xcbuild.xcrun ] + ++ lib.optionals (!stdenv.buildPlatform.canExecute stdenv.hostPlatform) [ mesonEmulatorHook ]; buildInputs = [ blas @@ -145,38 +148,46 @@ in buildPythonPackage rec { # https://github.com/numpy/numpy/blob/a277f6210739c11028f281b8495faf7da298dbef/numpy/_pytesttester.py#L180 pytestFlagsArray = [ - "-m" "not\\ slow" # fast test suite + "-m" + "not\\ slow" # fast test suite ]; # https://github.com/numpy/numpy/issues/24548 - disabledTests = lib.optionals stdenv.isi686 [ - "test_new_policy" # AssertionError: assert False - "test_identityless_reduction_huge_array" # ValueError: Maximum allowed dimension exceeded - "test_float_remainder_overflow" # AssertionError: FloatingPointError not raised by divmod - "test_int" # AssertionError: selectedintkind(19): expected 16 but got -1 - ] ++ lib.optionals stdenv.isAarch32 [ - "test_impossible_feature_enable" # AssertionError: Failed to generate error - "test_features" # AssertionError: Failure Detection - "test_new_policy" # AssertionError: assert False - "test_identityless_reduction_huge_array" # ValueError: Maximum allowed dimension exceeded - "test_unary_spurious_fpexception"# AssertionError: Got warnings: [<warnings.WarningMessage object at 0xd1197430>] - "test_int" # AssertionError: selectedintkind(19): expected 16 but got -1 - "test_real" # AssertionError: selectedrealkind(16): expected 10 but got -1 - "test_quad_precision" # AssertionError: selectedrealkind(32): expected 16 but got -1 - "test_big_arrays" # ValueError: array is too big; `arr.size * arr.dtype.itemsize` is larger tha... - "test_multinomial_pvals_float32" # Failed: DID NOT RAISE <class 'ValueError'> - ] ++ lib.optionals stdenv.isAarch64 [ - "test_big_arrays" # OOM on a 16G machine - ] ++ lib.optionals (stdenv.isDarwin && stdenv.isx86_64) [ - # can fail on virtualized machines confused over their cpu identity - "test_dispatcher" - ]; + disabledTests = + lib.optionals stdenv.isi686 [ + "test_new_policy" # AssertionError: assert False + "test_identityless_reduction_huge_array" # ValueError: Maximum allowed dimension exceeded + "test_float_remainder_overflow" # AssertionError: FloatingPointError not raised by divmod + "test_int" # AssertionError: selectedintkind(19): expected 16 but got -1 + ] + ++ lib.optionals stdenv.isAarch32 [ + "test_impossible_feature_enable" # AssertionError: Failed to generate error + "test_features" # AssertionError: Failure Detection + "test_new_policy" # AssertionError: assert False + "test_identityless_reduction_huge_array" # ValueError: Maximum allowed dimension exceeded + "test_unary_spurious_fpexception" # AssertionError: Got warnings: [<warnings.WarningMessage object at 0xd1197430>] + "test_int" # AssertionError: selectedintkind(19): expected 16 but got -1 + "test_real" # AssertionError: selectedrealkind(16): expected 10 but got -1 + "test_quad_precision" # AssertionError: selectedrealkind(32): expected 16 but got -1 + "test_big_arrays" # ValueError: array is too big; `arr.size * arr.dtype.itemsize` is larger tha... + "test_multinomial_pvals_float32" # Failed: DID NOT RAISE <class 'ValueError'> + ] + ++ lib.optionals stdenv.isAarch64 [ + "test_big_arrays" # OOM on a 16G machine + ] + ++ lib.optionals (stdenv.isDarwin && stdenv.isx86_64) [ + # can fail on virtualized machines confused over their cpu identity + "test_dispatcher" + ]; passthru = { # just for backwards compatibility blas = blas.provider; blasImplementation = blas.implementation; inherit cfg; + tests = { + inherit sage; + }; }; # Disable test |