diff options
Diffstat (limited to 'pkgs/development/python-modules/orange3/default.nix')
| -rw-r--r-- | pkgs/development/python-modules/orange3/default.nix | 152 |
1 files changed, 92 insertions, 60 deletions
diff --git a/pkgs/development/python-modules/orange3/default.nix b/pkgs/development/python-modules/orange3/default.nix index 1c4531254ae8c..e59e2a5dfaad4 100644 --- a/pkgs/development/python-modules/orange3/default.nix +++ b/pkgs/development/python-modules/orange3/default.nix @@ -1,47 +1,52 @@ -{ lib -, baycomp -, bottleneck -, buildPythonPackage -, chardet -, copyDesktopItems -, pythonRelaxDepsHook -, cython -, catboost -, xgboost -, fetchFromGitHub -, fetchurl -, httpx -, joblib -, keyring -, keyrings-alt -, makeDesktopItem -, matplotlib -, nix-update-script -, numpy -, oldest-supported-numpy -, openpyxl -, opentsne -, orange-canvas-core -, orange-widget-base -, pandas -, pyqtgraph -, pyqtwebengine -, python -, python-louvain -, pythonOlder -, pyyaml -, qt5 -, qtconsole -, recommonmark -, requests -, scikit-learn -, scipy -, serverfiles -, setuptools -, sphinx -, wheel -, xlrd -, xlsxwriter +{ + lib, + stdenv, + baycomp, + bottleneck, + buildPythonPackage, + chardet, + copyDesktopItems, + pythonRelaxDepsHook, + cython, + catboost, + xgboost, + fetchFromGitHub, + fetchurl, + httpx, + joblib, + keyring, + keyrings-alt, + makeDesktopItem, + matplotlib, + nix-update-script, + numpy, + oldest-supported-numpy, + openpyxl, + opentsne, + orange-canvas-core, + orange-widget-base, + pandas, + pytestCheckHook, + pytest-qt, + pyqtgraph, + pyqtwebengine, + python, + python-louvain, + pythonOlder, + pyyaml, + pip, + qt5, + qtconsole, + recommonmark, + requests, + scikit-learn, + scipy, + serverfiles, + setuptools, + sphinx, + wheel, + xlrd, + xlsxwriter, }: let @@ -112,6 +117,7 @@ let keyrings-alt pyyaml baycomp + pip ]; # FIXME: ImportError: cannot import name '_variable' from partially initialized module 'Orange.data' (most likely due to a circular import) (/build/source/Orange/data/__init__.py) @@ -120,7 +126,10 @@ let # FIXME: pythonRelaxDeps is not relaxing the scikit-learn version constraint, had to disable this dontCheckRuntimeDeps = true; - pythonImportsCheck = [ "Orange" "Orange.data._variable" ]; + pythonImportsCheck = [ + "Orange" + "Orange.data._variable" + ]; desktopItems = [ (makeDesktopItem { @@ -131,8 +140,19 @@ let comment = "Explore, analyze, and visualize your data"; icon = "orange-canvas"; mimeTypes = [ "application/x-extension-ows" ]; - categories = [ "Science" "Education" "ArtificialIntelligence" "DataVisualization" "NumericalAnalysis" "Qt" ]; - keywords = [ "Machine Learning" "Scientific Visualization" "Statistical Analysis" ]; + categories = [ + "Science" + "Education" + "ArtificialIntelligence" + "DataVisualization" + "NumericalAnalysis" + "Qt" + ]; + keywords = [ + "Machine Learning" + "Scientific Visualization" + "Statistical Analysis" + ]; }) ]; @@ -146,9 +166,9 @@ let passthru = { updateScript = nix-update-script { }; - tests.unittests = self.overridePythonAttrs (old: { - pname = "${old.pname}-tests"; - format = "other"; + tests.unittests = stdenv.mkDerivation { + name = "${self.name}-tests"; + inherit (self) src; preCheck = '' export HOME=$(mktemp -d) @@ -160,23 +180,35 @@ let cp -r ${self}/${python.sitePackages}/Orange . chmod +w -R . - rm Orange/tests/test_url_reader.py # uses network - rm Orange/tests/test_ada_boost.py # broken: The 'base_estimator' parameter of AdaBoostRegressor must be an object implementing 'fit' and 'predict' or a str among {'deprecated'}. Got None instead. - ''; + substituteInPlace Orange/classification/tests/test_xgb_cls.py \ + --replace test_learners mk_test_learners + + substituteInPlace Orange/modelling/tests/test_xgb.py \ + --replace test_learners mk_test_learners + + substituteInPlace Orange/**/tests/*.py \ + --replace test_filename filename_test + + # TODO: debug why orange is crashing on GC, may be a upstream issue + chmod +x Orange/__init__.py + echo "import gc; gc.disable()" | tee -a Orange/__init__.py - checkPhase = '' - runHook preCheck - ${python.interpreter} -m unittest -b -v ./Orange/**/test*.py - runHook postCheck ''; - postInstall = ""; + nativeBuildInputs = [ + pytestCheckHook + pytest-qt + ]; + + postCheck = '' + touch $out + ''; doBuild = false; doInstall = false; - nativeBuildInputs = [ self ] ++ old.nativeBuildInputs; - }); + buildInputs = [ self ]; + }; }; meta = with lib; { |