diff options
Diffstat (limited to 'pkgs/development/python-modules/rpy2/2.nix')
-rw-r--r-- | pkgs/development/python-modules/rpy2/2.nix | 108 |
1 files changed, 0 insertions, 108 deletions
diff --git a/pkgs/development/python-modules/rpy2/2.nix b/pkgs/development/python-modules/rpy2/2.nix deleted file mode 100644 index 3108861e9ce22..0000000000000 --- a/pkgs/development/python-modules/rpy2/2.nix +++ /dev/null @@ -1,108 +0,0 @@ -{ lib -, python -, buildPythonPackage -, fetchPypi -, isPyPy -, isPy27 -, readline -, R -, rWrapper -, rPackages -, pcre -, xz -, bzip2 -, zlib -, icu -, singledispatch -, six -, jinja2 -, pytz -, numpy -, pytest -, mock -, extraRPackages ? [] -}: - -buildPythonPackage rec { - version = "2.8.6"; # python2 support dropped in 2.9.x - pname = "rpy2"; - disabled = isPyPy; - src = fetchPypi { - inherit version pname; - sha256 = "162zki5c1apgv6qbafi7n66y4hgpgp43xag7q75qb6kv99ri6k80"; - }; - buildInputs = [ - readline - R - pcre - xz - bzip2 - zlib - icu - ] ++ (with rPackages; [ - # packages expected by the test framework - ggplot2 - dplyr - RSQLite - broom - DBI - dbplyr - hexbin - lme4 - tidyr - - # is in upstream's `requires` although it shouldn't be -- this is easier than patching it away - pytest - ]) ++ extraRPackages ++ rWrapper.recommendedPackages; - - nativeBuildInputs = [ - R # needed at setup time to detect R_HOME (alternatively set R_HOME explicitly) - ]; - - patches = [ - # R_LIBS_SITE is used by the nix r package to point to the installed R libraries. - # This patch sets R_LIBS_SITE when rpy2 is imported. - ./r-libs-site.patch - ]; - postPatch = '' - substituteInPlace ${ if isPy27 then "rpy/rinterface/__init__.py" else "rpy2/rinterface_lib/embedded.py" } --replace '@NIX_R_LIBS_SITE@' "$R_LIBS_SITE" - ''; - - doPatchelf = false; # fails because of "missing filename" - patchelfPhase = ""; - - propagatedBuildInputs = [ - singledispatch - six - jinja2 - pytz - numpy - ]; - - checkInputs = [ - pytest - mock - ]; - # One remaining test failure caused by different unicode encoding. - # https://bitbucket.org/rpy2/rpy2/issues/488 - doCheck = false; - checkPhase = '' - ${python.interpreter} -m 'rpy2' - ''; - - # For some reason libreadline.so is not found. Curiously `ldd _rinterface.so | grep readline` shows two readline entries: - # libreadline.so.6 => not found - # libreadline.so.6 => /nix/store/z2zhmrg6jcrn5iq2779mav0nnq4vm2q6-readline-6.3p08/lib/libreadline.so.6 (0x00007f333ac43000) - # There must be a better way to fix this, but I don't know it. - postFixup = '' - patchelf --add-needed ${readline}/lib/libreadline.so "$out/${python.sitePackages}/rpy2/rinterface/"_rinterface*.so - ''; - - meta = { - homepage = "http://rpy.sourceforge.net/rpy2"; - description = "Python interface to R"; - license = lib.licenses.gpl2Plus; - platforms = lib.platforms.unix; - maintainers = with lib.maintainers; [ joelmo ]; - }; - } |