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-rw-r--r--pkgs/development/python-modules/aioeagle/default.nix26
-rw-r--r--pkgs/development/python-modules/aiounifi/default.nix4
-rw-r--r--pkgs/development/python-modules/awkward/default.nix3
-rw-r--r--pkgs/development/python-modules/awswrangler/default.nix78
-rw-r--r--pkgs/development/python-modules/azure-cosmos/default.nix35
-rw-r--r--pkgs/development/python-modules/backports-shutil-which/default.nix5
-rw-r--r--pkgs/development/python-modules/boto3-stubs/default.nix4
-rw-r--r--pkgs/development/python-modules/botocore-stubs/default.nix4
-rw-r--r--pkgs/development/python-modules/clarifai-grpc/default.nix4
-rw-r--r--pkgs/development/python-modules/coffea/default.nix4
-rw-r--r--pkgs/development/python-modules/crc/default.nix37
-rw-r--r--pkgs/development/python-modules/dask-expr/default.nix60
-rw-r--r--pkgs/development/python-modules/dask/default.nix48
-rw-r--r--pkgs/development/python-modules/distributed/default.nix4
-rw-r--r--pkgs/development/python-modules/git-versioner/default.nix34
-rw-r--r--pkgs/development/python-modules/ical/default.nix8
-rw-r--r--pkgs/development/python-modules/imageio/default.nix8
-rw-r--r--pkgs/development/python-modules/llama-index-agent-openai/default.nix4
-rw-r--r--pkgs/development/python-modules/llama-index-vector-stores-qdrant/default.nix4
-rw-r--r--pkgs/development/python-modules/manga-ocr/default.nix65
-rw-r--r--pkgs/development/python-modules/manga-ocr/package_data.patch12
-rw-r--r--pkgs/development/python-modules/mdformat-mkdocs/default.nix4
-rw-r--r--pkgs/development/python-modules/numba/default.nix2
-rw-r--r--pkgs/development/python-modules/ocrmypdf/default.nix21
-rw-r--r--pkgs/development/python-modules/ocrmypdf/use-pillow-heif.patch26
-rw-r--r--pkgs/development/python-modules/onetimepass/default.nix29
-rw-r--r--pkgs/development/python-modules/openai-whisper/default.nix6
-rw-r--r--pkgs/development/python-modules/pillow-heif/default.nix8
-rw-r--r--pkgs/development/python-modules/pip-system-certs/default.nix43
-rw-r--r--pkgs/development/python-modules/pip-tools/default.nix3
-rw-r--r--pkgs/development/python-modules/pip-tools/fix-setup-py-bad-syntax-detection.patch25
-rw-r--r--pkgs/development/python-modules/plantuml-markdown/default.nix4
-rw-r--r--pkgs/development/python-modules/pyaml/default.nix4
-rw-r--r--pkgs/development/python-modules/pydrawise/default.nix45
-rw-r--r--pkgs/development/python-modules/spacy/default.nix2
-rw-r--r--pkgs/development/python-modules/testcontainers/default.nix4
-rw-r--r--pkgs/development/python-modules/timecop/default.nix21
-rw-r--r--pkgs/development/python-modules/transformers/default.nix4
-rw-r--r--pkgs/development/python-modules/units/default.nix22
-rw-r--r--pkgs/development/python-modules/zha/default.nix7
40 files changed, 502 insertions, 229 deletions
diff --git a/pkgs/development/python-modules/aioeagle/default.nix b/pkgs/development/python-modules/aioeagle/default.nix
index 87f38ec71ea37..3c931fe69ef8e 100644
--- a/pkgs/development/python-modules/aioeagle/default.nix
+++ b/pkgs/development/python-modules/aioeagle/default.nix
@@ -1,26 +1,30 @@
-{ lib
-, aiohttp
-, buildPythonPackage
-, fetchFromGitHub
-, pythonOlder
-, xmltodict
+{
+  lib,
+  aiohttp,
+  buildPythonPackage,
+  fetchFromGitHub,
+  pythonOlder,
+  setuptools,
+  xmltodict,
 }:
 
 buildPythonPackage rec {
   pname = "aioeagle";
   version = "1.1.0";
-  format = "setuptools";
+  pyproject = true;
 
   disabled = pythonOlder "3.8";
 
   src = fetchFromGitHub {
     owner = "home-assistant-libs";
-    repo = pname;
-    rev = version;
-    sha256 = "117nb50cxwrixif2r6fxmr9v0jxkcamm816v48hbhyc660w6xvk4";
+    repo = "aioeagle";
+    rev = "refs/tags/${version}";
+    hash = "sha256-ZO5uODCGebggItsEVKtis0uwU67dmSxc7DHzzkBZ9oQ=";
   };
 
-  propagatedBuildInputs = [
+  build-system = [ setuptools ];
+
+  dependencies = [
     aiohttp
     xmltodict
   ];
diff --git a/pkgs/development/python-modules/aiounifi/default.nix b/pkgs/development/python-modules/aiounifi/default.nix
index 05784995f70e4..e36d82b521c5c 100644
--- a/pkgs/development/python-modules/aiounifi/default.nix
+++ b/pkgs/development/python-modules/aiounifi/default.nix
@@ -16,7 +16,7 @@
 
 buildPythonPackage rec {
   pname = "aiounifi";
-  version = "75";
+  version = "76";
   pyproject = true;
 
   disabled = pythonOlder "3.11";
@@ -25,7 +25,7 @@ buildPythonPackage rec {
     owner = "Kane610";
     repo = "aiounifi";
     rev = "refs/tags/v${version}";
-    hash = "sha256-IPm3/i+JJpjVfRFq+Yq1mfajHL/mOARk5koyy/t37NQ=";
+    hash = "sha256-N9N7sMHBiEhYUFok4bTSJZyp5pkJzj9pMxahY6FTx+I=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/awkward/default.nix b/pkgs/development/python-modules/awkward/default.nix
index 41043eef5deea..d347b623d4077 100644
--- a/pkgs/development/python-modules/awkward/default.nix
+++ b/pkgs/development/python-modules/awkward/default.nix
@@ -75,6 +75,9 @@ buildPythonPackage rec {
   # The following tests have been disabled because they need to be run on a GPU platform.
   disabledTestPaths = [
     "tests-cuda"
+  # Disable tests dependending on jax on darwin
+  ] ++ lib.optionals stdenv.isDarwin [
+    "tests/test_2603_custom_behaviors_with_jax.py"
   ];
 
   meta = with lib; {
diff --git a/pkgs/development/python-modules/awswrangler/default.nix b/pkgs/development/python-modules/awswrangler/default.nix
index ad861143dccab..b222c5703cd4a 100644
--- a/pkgs/development/python-modules/awswrangler/default.nix
+++ b/pkgs/development/python-modules/awswrangler/default.nix
@@ -1,32 +1,33 @@
-{ backoff
-, sparqlwrapper
-, boto3
-, buildPythonPackage
-, fetchFromGitHub
-, gremlinpython
-, jsonpath-ng
-, lib
-, moto
-, openpyxl
-, opensearch-py
-, pandas
-, pg8000
-, poetry-core
-, progressbar2
-, pyarrow
-, pymysql
-, pyodbc
-, pyparsing
-, pytestCheckHook
-, pythonOlder
-, pythonRelaxDepsHook
-, redshift-connector
-, requests-aws4auth
+{
+  backoff,
+  sparqlwrapper,
+  boto3,
+  buildPythonPackage,
+  fetchFromGitHub,
+  gremlinpython,
+  jsonpath-ng,
+  lib,
+  moto,
+  openpyxl,
+  opensearch-py,
+  pandas,
+  pg8000,
+  poetry-core,
+  progressbar2,
+  pyarrow,
+  pymysql,
+  pyodbc,
+  pyparsing,
+  pytestCheckHook,
+  pythonOlder,
+  pythonRelaxDepsHook,
+  redshift-connector,
+  requests-aws4auth,
 }:
 
 buildPythonPackage rec {
   pname = "awswrangler";
-  version = "3.7.2";
+  version = "3.7.3";
   pyproject = true;
 
   disabled = pythonOlder "3.8";
@@ -35,16 +36,17 @@ buildPythonPackage rec {
     owner = "aws";
     repo = "aws-sdk-pandas";
     rev = "refs/tags/${version}";
-    hash = "sha256-1eb2oTiRNxA2XTpkScA5WJutN5P6FX96jC4Ra9VdonI=";
+    hash = "sha256-gm6ieteW+NcY+AOLcMZLUPcSi2Z/Mo27rzd1i9imp5I=";
   };
 
+  pythonRelaxDeps = [ "packaging" ];
+
   build-system = [
     poetry-core
-    pythonRelaxDepsHook
   ];
 
-  pythonRelaxDeps = [
-    "packaging"
+  nativeBuildInputs = [
+    pythonRelaxDepsHook
   ];
 
   dependencies = [
@@ -62,12 +64,21 @@ buildPythonPackage rec {
     requests-aws4auth
   ];
 
+  passthru.optional-dependencies = {
+    sqlserver = [ pyodbc ];
+    sparql = [ sparqlwrapper ];
+  };
+
   nativeCheckInputs = [
     moto
     pyparsing
     pytestCheckHook
   ];
 
+  pythonImportsCheck = [
+    "awswrangler"
+  ];
+
   pytestFlagsArray = [
     # Subset of tests that run in upstream CI (many others require credentials)
     # https://github.com/aws/aws-sdk-pandas/blob/20fec775515e9e256e8cee5aee12966516608840/.github/workflows/minimal-tests.yml#L36-L43
@@ -77,15 +88,6 @@ buildPythonPackage rec {
     "tests/unit/test_moto.py"
   ];
 
-  passthru.optional-dependencies = {
-    sqlserver = [
-      pyodbc
-    ];
-    sparql = [
-      sparqlwrapper
-    ];
-  };
-
   meta = with lib; {
     description = "Pandas on AWS";
     homepage = "https://github.com/aws/aws-sdk-pandas";
diff --git a/pkgs/development/python-modules/azure-cosmos/default.nix b/pkgs/development/python-modules/azure-cosmos/default.nix
index 535a4664514ff..df687eb52ac52 100644
--- a/pkgs/development/python-modules/azure-cosmos/default.nix
+++ b/pkgs/development/python-modules/azure-cosmos/default.nix
@@ -1,30 +1,43 @@
-{ buildPythonPackage
-, lib
-, fetchPypi
-, six
-, requests
+{
+  lib,
+  azure-core,
+  buildPythonPackage,
+  fetchPypi,
+  pythonOlder,
+  setuptools,
+  typing-extensions,
 }:
 
 buildPythonPackage rec {
-  version = "4.6.0";
-  format = "setuptools";
   pname = "azure-cosmos";
+  version = "4.6.0";
+  pyproject = true;
+
+  disabled = pythonOlder "3.8";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "sha256-2uxqwgHGRzsJK2Ku5x44G+62w6jcNhJJgytwSMTwYeI=";
+    hash = "sha256-2uxqwgHGRzsJK2Ku5x44G+62w6jcNhJJgytwSMTwYeI=";
   };
 
-  propagatedBuildInputs = [ six requests ];
+  build-system = [ setuptools ];
+
+  dependencies = [
+    azure-core
+    typing-extensions
+  ];
 
   pythonNamespaces = [ "azure" ];
 
-  # requires an active Azure Cosmos service
+  # Requires an active Azure Cosmos service
   doCheck = false;
 
+  pythonImportsCheck = [ "azure.cosmos" ];
+
   meta = with lib; {
     description = "Azure Cosmos DB API";
-    homepage = "https://github.com/Azure/azure-sdk-for-python";
+    homepage = "https://github.com/Azure/azure-sdk-for-python/tree/main/sdk/cosmos/azure-cosmos";
+    changelog = "https://github.com/Azure/azure-sdk-for-python/blob/azure-cosmos_${version}/sdk/cosmos/azure-cosmos/CHANGELOG.md";
     license = licenses.mit;
     maintainers = with maintainers; [ jonringer ];
   };
diff --git a/pkgs/development/python-modules/backports-shutil-which/default.nix b/pkgs/development/python-modules/backports-shutil-which/default.nix
index 95b47bb6028ed..290e4e2697811 100644
--- a/pkgs/development/python-modules/backports-shutil-which/default.nix
+++ b/pkgs/development/python-modules/backports-shutil-which/default.nix
@@ -1,11 +1,12 @@
 { lib, fetchPypi, buildPythonPackage, pytest }:
 
 buildPythonPackage rec {
-  pname = "backports.shutil_which";
+  pname = "backports-shutil-which";
   version = "3.5.2";
 
   src = fetchPypi {
-    inherit pname version;
+    pname = "backports.shutil_which";
+    inherit version;
     sha256 = "fe39f567cbe4fad89e8ac4dbeb23f87ef80f7fe8e829669d0221ecdb0437c133";
   };
 
diff --git a/pkgs/development/python-modules/boto3-stubs/default.nix b/pkgs/development/python-modules/boto3-stubs/default.nix
index 7d2776ffe76a1..c11a021b4abc2 100644
--- a/pkgs/development/python-modules/boto3-stubs/default.nix
+++ b/pkgs/development/python-modules/boto3-stubs/default.nix
@@ -366,7 +366,7 @@
 
 buildPythonPackage rec {
   pname = "boto3-stubs";
-  version = "1.34.88";
+  version = "1.34.89";
   pyproject = true;
 
   disabled = pythonOlder "3.7";
@@ -374,7 +374,7 @@ buildPythonPackage rec {
   src = fetchPypi {
     pname = "boto3_stubs";
     inherit version;
-    hash = "sha256-I8qeDNDT53AtZjGh6UpCCKJrOfprEsc0Qn5op/pklHc=";
+    hash = "sha256-LGZI40McFYE28MHyHkQtPt4/taUkpacOo4AffpUUoQc=";
   };
 
   build-system = [ setuptools ];
diff --git a/pkgs/development/python-modules/botocore-stubs/default.nix b/pkgs/development/python-modules/botocore-stubs/default.nix
index 3b536f15577c5..e4ada4a18276b 100644
--- a/pkgs/development/python-modules/botocore-stubs/default.nix
+++ b/pkgs/development/python-modules/botocore-stubs/default.nix
@@ -9,7 +9,7 @@
 
 buildPythonPackage rec {
   pname = "botocore-stubs";
-  version = "1.34.88";
+  version = "1.34.89";
   pyproject = true;
 
   disabled = pythonOlder "3.7";
@@ -17,7 +17,7 @@ buildPythonPackage rec {
   src = fetchPypi {
     pname = "botocore_stubs";
     inherit version;
-    hash = "sha256-ZW6WbqFSpPKCiJKqepZzvJF5mZj1qO/Y6P45D2HC9PE=";
+    hash = "sha256-stdBa1JLznMlql/gm7XgtryVMdQTb0QH+jm2vFhQfzQ=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/clarifai-grpc/default.nix b/pkgs/development/python-modules/clarifai-grpc/default.nix
index ce7929e5a3455..e163bc4159e10 100644
--- a/pkgs/development/python-modules/clarifai-grpc/default.nix
+++ b/pkgs/development/python-modules/clarifai-grpc/default.nix
@@ -12,7 +12,7 @@
 
 buildPythonPackage rec {
   pname = "clarifai-grpc";
-  version = "10.3.0";
+  version = "10.3.2";
   pyproject = true;
 
   disabled = pythonOlder "3.8";
@@ -21,7 +21,7 @@ buildPythonPackage rec {
     owner = "Clarifai";
     repo = "clarifai-python-grpc";
     rev = "refs/tags/${version}";
-    hash = "sha256-JdRqZCDU5ScI3ZUTsWnFHYQ7Zog6V2xcbBDvFcHPnCk=";
+    hash = "sha256-rymu9BUbU8d0BgBpE/1bOAqGxVN3ksyvq6Wy0KZ+KkY=";
   };
 
   build-system = [ setuptools ];
diff --git a/pkgs/development/python-modules/coffea/default.nix b/pkgs/development/python-modules/coffea/default.nix
index 3f5de521b0a87..86090e3b25562 100644
--- a/pkgs/development/python-modules/coffea/default.nix
+++ b/pkgs/development/python-modules/coffea/default.nix
@@ -32,7 +32,7 @@
 
 buildPythonPackage rec {
   pname = "coffea";
-  version = "2024.2.2";
+  version = "2024.4.1";
   pyproject = true;
 
   disabled = pythonOlder "3.8";
@@ -41,7 +41,7 @@ buildPythonPackage rec {
     owner = "CoffeaTeam";
     repo = "coffea";
     rev = "refs/tags/v${version}";
-    hash = "sha256-GdoVb9YtlUlrSx7TWWrdHOqOJJ4M+kJspOllv6HgFXk=";
+    hash = "sha256-Iu1GHnLUqdhYO7hoHaf+O/S6KO0P+dvl0wgfRA5vtGI=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/crc/default.nix b/pkgs/development/python-modules/crc/default.nix
index 9540e9d315da9..41452149eaff2 100644
--- a/pkgs/development/python-modules/crc/default.nix
+++ b/pkgs/development/python-modules/crc/default.nix
@@ -1,14 +1,15 @@
-{ lib
-, buildPythonPackage
-, fetchFromGitHub
-, poetry-core
-, pytestCheckHook
-, pythonOlder
+{
+  lib,
+  buildPythonPackage,
+  fetchFromGitHub,
+  poetry-core,
+  pytestCheckHook,
+  pythonOlder,
 }:
 
 buildPythonPackage rec {
   pname = "crc";
-  version = "6.1.2";
+  version = "7.0.0";
   pyproject = true;
 
   disabled = pythonOlder "3.8";
@@ -17,31 +18,23 @@ buildPythonPackage rec {
     owner = "Nicoretti";
     repo = "crc";
     rev = "refs/tags/${version}";
-    hash = "sha256-d946yBMrOIgMXGOr2ej5bvn59D5iAGMese24qdv8l/Y=";
+    hash = "sha256-y30tnGG+G9dWBO8MUFYm2IGHiGIPbv4kB2VwhV0/C74=";
   };
 
-  nativeBuildInputs = [
-    poetry-core
-  ];
+  build-system = [ poetry-core ];
 
-  nativeCheckInputs = [
-    pytestCheckHook
-  ];
+  nativeCheckInputs = [ pytestCheckHook ];
 
-  pythonImportsCheck = [
-    "crc"
-  ];
+  pythonImportsCheck = [ "crc" ];
 
-  disabledTestPaths = [
-    "test/bench"
-  ];
+  disabledTestPaths = [ "test/bench" ];
 
   meta = with lib; {
-    changelog = "https://github.com/Nicoretti/crc/releases/tag/${version}";
     description = "Python module for calculating and verifying predefined & custom CRC's";
-    mainProgram = "crc";
     homepage = "https://nicoretti.github.io/crc/";
+    changelog = "https://github.com/Nicoretti/crc/releases/tag/${version}";
     license = licenses.bsd2;
     maintainers = with maintainers; [ jleightcap ];
+    mainProgram = "crc";
   };
 }
diff --git a/pkgs/development/python-modules/dask-expr/default.nix b/pkgs/development/python-modules/dask-expr/default.nix
new file mode 100644
index 0000000000000..68dca5fe42fe0
--- /dev/null
+++ b/pkgs/development/python-modules/dask-expr/default.nix
@@ -0,0 +1,60 @@
+{
+  lib,
+  buildPythonPackage,
+  pythonOlder,
+  fetchFromGitHub,
+  setuptools,
+  versioneer,
+  wheel,
+  dask,
+  pandas,
+  pyarrow,
+  distributed,
+  pytestCheckHook,
+}:
+
+buildPythonPackage rec {
+  pname = "dask-expr";
+  version = "1.0.12";
+  pyproject = true;
+
+  disabled = pythonOlder "3.9";
+
+  src = fetchFromGitHub {
+    owner = "dask";
+    repo = "dask-expr";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-B/BkLOZhvUyjinaFKp0ecUfzvLb5S90q+YHmJwS6WSQ=";
+  };
+
+  postPatch = ''
+    substituteInPlace pyproject.toml \
+      --replace-fail "versioneer[toml]==0.28" "versioneer[toml]"
+  '';
+
+  nativeBuildInputs = [
+    setuptools
+    versioneer
+    wheel
+  ];
+
+  propagatedBuildInputs = [
+    dask
+    pandas
+    pyarrow
+  ];
+
+  pythonImportsCheck = [ "dask_expr" ];
+
+  nativeCheckInputs = [
+    distributed
+    pytestCheckHook
+  ];
+
+  meta = with lib; {
+    description = "";
+    homepage = "https://github.com/dask/dask-expr";
+    license = licenses.bsd3;
+    maintainers = with maintainers; [ GaetanLepage ];
+  };
+}
diff --git a/pkgs/development/python-modules/dask/default.nix b/pkgs/development/python-modules/dask/default.nix
index ee12386ae3d8b..df9179539fe38 100644
--- a/pkgs/development/python-modules/dask/default.nix
+++ b/pkgs/development/python-modules/dask/default.nix
@@ -2,7 +2,6 @@
 , stdenv
 , buildPythonPackage
 , fetchFromGitHub
-, fetchpatch
 
 # build-system
 , setuptools
@@ -29,6 +28,7 @@
 
 # tests
 , arrow-cpp
+, dask-expr
 , hypothesis
 , pytest-asyncio
 , pytest-rerunfailures
@@ -37,9 +37,9 @@
 , pythonOlder
 }:
 
-buildPythonPackage rec {
+let self = buildPythonPackage rec {
   pname = "dask";
-  version = "2024.2.1";
+  version = "2024.4.2";
   pyproject = true;
 
   disabled = pythonOlder "3.9";
@@ -48,22 +48,9 @@ buildPythonPackage rec {
     owner = "dask";
     repo = "dask";
     rev = "refs/tags/${version}";
-    hash = "sha256-8VFtKPaF0PqCjqFB+plFe1GjUno5j7j86+wxKhzByyw=";
+    hash = "sha256-iD+diwctXaQlOpL0fjOiFoWVONtlMq7AonbC0vCmXc0=";
   };
 
-  patches = [
-    # A pair of fixes with python 3.11.9, merged upstream;
-    # see https://github.com/dask/dask/issues/11038
-    (fetchpatch {
-      url = "https://github.com/dask/dask/pull/11035.diff";
-      hash = "sha256-aQTzas8gn7pCyp7L6VV3NpSYgqC1Ov7YN7YGnX0Vwmo=";
-    })
-    (fetchpatch {
-      url = "https://github.com/dask/dask/pull/11039.diff";
-      hash = "sha256-gvEEvnyhFlhiFvVaB6jwMy4auUOvECf49FbFJyjqQm4=";
-    })
-  ];
-
   nativeBuildInputs = [
     setuptools
     wheel
@@ -93,6 +80,7 @@ buildPythonPackage rec {
     ++ self.distributed
     ++ self.diagnostics;
     dataframe = [
+      # dask-expr -> circular dependency with dask-expr
       numpy
       pandas
     ];
@@ -106,6 +94,7 @@ buildPythonPackage rec {
   });
 
   nativeCheckInputs = [
+    dask-expr
     pytestCheckHook
     pytest-rerunfailures
     pytest-xdist
@@ -113,6 +102,7 @@ buildPythonPackage rec {
     hypothesis
     pytest-asyncio
   ]
+  ++ passthru.optional-dependencies.array
   ++ passthru.optional-dependencies.dataframe
   ++ lib.optionals (!arrow-cpp.meta.broken) [ # support is sparse on aarch64
     pyarrow
@@ -172,15 +162,29 @@ buildPythonPackage rec {
 
   pythonImportsCheck = [
     "dask"
-    "dask.array"
     "dask.bag"
     "dask.bytes"
-    "dask.dataframe"
-    "dask.dataframe.io"
-    "dask.dataframe.tseries"
     "dask.diagnostics"
   ];
 
+  doCheck = false;
+
+  # Enable tests via passthru to avoid cyclic dependency with dask-expr.
+  passthru.tests = {
+    check = self.overridePythonAttrs (old: {
+      doCheck = true;
+      pythonImportsCheck = [
+        # Requires the `dask.optional-dependencies.array` that are only in `nativeCheckInputs`
+        "dask.array"
+        # Requires the `dask.optional-dependencies.dataframe` that are only in `nativeCheckInputs`
+        "dask.dataframe"
+        "dask.dataframe.io"
+        "dask.dataframe.tseries"
+      ] ++ old.pythonImportsCheck;
+    });
+  };
+
+
   meta = with lib; {
     description = "Minimal task scheduling abstraction";
     mainProgram = "dask";
@@ -189,4 +193,4 @@ buildPythonPackage rec {
     license = licenses.bsd3;
     maintainers = with maintainers; [ fridh ];
   };
-}
+}; in self
diff --git a/pkgs/development/python-modules/distributed/default.nix b/pkgs/development/python-modules/distributed/default.nix
index c5be90d0af98a..890f579207cac 100644
--- a/pkgs/development/python-modules/distributed/default.nix
+++ b/pkgs/development/python-modules/distributed/default.nix
@@ -25,7 +25,7 @@
 
 buildPythonPackage rec {
   pname = "distributed";
-  version = "2023.12.0";
+  version = "2024.4.2";
   pyproject = true;
 
   disabled = pythonOlder "3.9";
@@ -34,7 +34,7 @@ buildPythonPackage rec {
     owner = "dask";
     repo = "distributed";
     rev = "refs/tags/${version}";
-    hash = "sha256-Zv31BTzY31eXkU7wqa+h33qGrH+OTzKEj6L7Ei/aizk=";
+    hash = "sha256-xoQ+b7qzstZl9gRNs4jssNOsGQHDdvTXU7pTjBSuyWs=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/git-versioner/default.nix b/pkgs/development/python-modules/git-versioner/default.nix
new file mode 100644
index 0000000000000..564bf1af9f610
--- /dev/null
+++ b/pkgs/development/python-modules/git-versioner/default.nix
@@ -0,0 +1,34 @@
+{ lib
+, buildPythonPackage
+, setuptools-scm
+, fetchFromGitLab
+}:
+
+buildPythonPackage rec {
+  pname = "git-versioner";
+  version = "7.1";
+  pyproject = true;
+
+  src = fetchFromGitLab {
+    owner = "alelec";
+    repo = "__version__";
+    rev = "v${version}";
+    hash = "sha256-bnpuFJSd4nBXJA75V61kiB+nU5pUzdEAIScfKx7aaGU=";
+  };
+
+  nativeBuildInputs = [
+    setuptools-scm
+  ];
+
+  pythonImportsCheck = [
+    "__version__"
+  ];
+
+  meta = with lib; {
+    description = "Manage current / next version for project";
+    homepage = "https://gitlab.com/alelec/__version__";
+    license = licenses.mit;
+    maintainers = with maintainers; [ slotThe ];
+  };
+
+}
diff --git a/pkgs/development/python-modules/ical/default.nix b/pkgs/development/python-modules/ical/default.nix
index fa904248f3e6b..7807d5d7b2798 100644
--- a/pkgs/development/python-modules/ical/default.nix
+++ b/pkgs/development/python-modules/ical/default.nix
@@ -16,7 +16,7 @@
 
 buildPythonPackage rec {
   pname = "ical";
-  version = "7.0.3";
+  version = "8.0.0";
   pyproject = true;
 
   disabled = pythonOlder "3.10";
@@ -25,14 +25,14 @@ buildPythonPackage rec {
     owner = "allenporter";
     repo = "ical";
     rev = "refs/tags/${version}";
-    hash = "sha256-RiwWnRSe0HdeGVo592A+Rk+IvA1Lfp6mY+/ZEyqJBDU=";
+    hash = "sha256-nwF6iInQzHdOtmcC1fi6CS2LnYRCxc/DS9bg8IxTlFg=";
   };
 
-  nativeBuildInputs = [
+  build-system = [
     setuptools
   ];
 
-  propagatedBuildInputs = [
+  dependencies = [
     python-dateutil
     tzdata
     pydantic
diff --git a/pkgs/development/python-modules/imageio/default.nix b/pkgs/development/python-modules/imageio/default.nix
index 1817429600a37..a5a71c38bc972 100644
--- a/pkgs/development/python-modules/imageio/default.nix
+++ b/pkgs/development/python-modules/imageio/default.nix
@@ -31,7 +31,7 @@
 
 buildPythonPackage rec {
   pname = "imageio";
-  version = "2.34.0";
+  version = "2.34.1";
   pyproject = true;
 
   disabled = pythonOlder "3.8";
@@ -40,7 +40,7 @@ buildPythonPackage rec {
     owner = "imageio";
     repo = "imageio";
     rev = "refs/tags/v${version}";
-    hash = "sha256-+I5KmKSLi8ARbDH06em71LWhmqziAaDfaBp4hU67/jg=";
+    hash = "sha256-/VZUifiz8iImq+JLvckFDr7YMIqu0Xro2t3GFj0obg0=";
   };
 
   patches = lib.optionals (!stdenv.isDarwin) [
@@ -50,11 +50,11 @@ buildPythonPackage rec {
     })
   ];
 
-  nativeBuildInputs = [
+  build-system = [
     setuptools
   ];
 
-  propagatedBuildInputs = [
+  dependencies = [
     numpy
     pillow
   ];
diff --git a/pkgs/development/python-modules/llama-index-agent-openai/default.nix b/pkgs/development/python-modules/llama-index-agent-openai/default.nix
index 1f8de109b1de9..2fb90a615f46e 100644
--- a/pkgs/development/python-modules/llama-index-agent-openai/default.nix
+++ b/pkgs/development/python-modules/llama-index-agent-openai/default.nix
@@ -11,7 +11,7 @@
 
 buildPythonPackage rec {
   pname = "llama-index-agent-openai";
-  version = "0.2.2";
+  version = "0.2.3";
   pyproject = true;
 
   disabled = pythonOlder "3.8";
@@ -19,7 +19,7 @@ buildPythonPackage rec {
   src = fetchPypi {
     pname = "llama_index_agent_openai";
     inherit version;
-    hash = "sha256-EgY92TLHQBV5b5c5hsxS14P1H9o45OrXKlbQ/RlZJe4=";
+    hash = "sha256-yJnZCzIDZlao74bQ8DeNQWjgDrLXWhCQHqtYulsmVqQ=";
   };
 
   pythonRelaxDeps = [ "llama-index-llms-openai" ];
diff --git a/pkgs/development/python-modules/llama-index-vector-stores-qdrant/default.nix b/pkgs/development/python-modules/llama-index-vector-stores-qdrant/default.nix
index 46ba1221f3838..28d2785db2376 100644
--- a/pkgs/development/python-modules/llama-index-vector-stores-qdrant/default.nix
+++ b/pkgs/development/python-modules/llama-index-vector-stores-qdrant/default.nix
@@ -11,7 +11,7 @@
 
 buildPythonPackage rec {
   pname = "llama-index-vector-stores-qdrant";
-  version = "0.2.1";
+  version = "0.2.5";
   pyproject = true;
 
   disabled = pythonOlder "3.8";
@@ -19,7 +19,7 @@ buildPythonPackage rec {
   src = fetchPypi {
     pname = "llama_index_vector_stores_qdrant";
     inherit version;
-    hash = "sha256-begHJBxdu+19LIoNgAd3Gnei2TQqpEU3gd6cVrv0zGw=";
+    hash = "sha256-5lkQ0AZ15qx5v0PaaYYNElNUfjxY1i2rOKTSPVq5H9Y=";
   };
 
   build-system = [ poetry-core ];
diff --git a/pkgs/development/python-modules/manga-ocr/default.nix b/pkgs/development/python-modules/manga-ocr/default.nix
new file mode 100644
index 0000000000000..7f0371c356ae3
--- /dev/null
+++ b/pkgs/development/python-modules/manga-ocr/default.nix
@@ -0,0 +1,65 @@
+{
+  lib,
+  fetchFromGitHub,
+  buildPythonPackage,
+  fire,
+  fugashi,
+  jaconv,
+  loguru,
+  numpy,
+  pillow,
+  pyperclip,
+  torch,
+  transformers,
+  unidic-lite,
+  pythonOlder,
+}:
+buildPythonPackage rec {
+  pname = "manga-ocr";
+  version = "0.1.11";
+  disabled = pythonOlder "3.7";
+
+  src = fetchFromGitHub {
+    owner = "kha-white";
+    repo = pname;
+    rev = "refs/tags/v${version}";
+    hash = "sha256-cLmgHBt6HvhY6Hb9yQ425Gk181axnMr+Mp2LxSmPoDg=";
+  };
+
+  preBuild = ''
+    # remove subproject dedicated to model training
+    rm -rf manga_ocr_dev
+    # copy assets/example.jpg inside the package
+    # required by https://github.com/kha-white/manga-ocr/blob/ba1b0d94a8ef6676b618ba4e5ffe8ce2ab655270/manga_ocr/ocr.py#L27-L30
+    # see also package_data.patch
+    mkdir manga_ocr/assets
+    cp assets/example.jpg manga_ocr/assets/example.jpg
+  '';
+
+  patches = [
+    # instruct setuptool to copy assets/example.jpg to package when building wheel
+    ./package_data.patch
+  ];
+
+  propagatedBuildInputs = [
+    # taken from requirements.txt
+    fire
+    fugashi
+    jaconv
+    loguru
+    numpy
+    pillow
+    pyperclip
+    torch
+    transformers
+    unidic-lite
+  ];
+
+  meta = with lib; {
+    description = "Optical character recognition for Japanese text, with the main focus being Japanese manga";
+    homepage = "https://github.com/kha-white/manga-ocr";
+    changelog = "https://github.com/kha-white/manga-ocr/releases/tag/${version}";
+    license = licenses.asl20;
+    maintainers = with maintainers; [laurent-f1z1];
+  };
+}
diff --git a/pkgs/development/python-modules/manga-ocr/package_data.patch b/pkgs/development/python-modules/manga-ocr/package_data.patch
new file mode 100644
index 0000000000000..6c643f669d3c8
--- /dev/null
+++ b/pkgs/development/python-modules/manga-ocr/package_data.patch
@@ -0,0 +1,12 @@
+diff --git a/setup.py b/setup.py
+--- a/setup.py
++++ b/setup.py
+@@ -18,6 +18,9 @@ setup(
+     ],
+     packages=['manga_ocr'],
+     include_package_data=True,
++    package_data={
++        'manga_ocr': ['assets/example.jpg'],
++    },
+     install_requires=[
+         "fire",
\ No newline at end of file
diff --git a/pkgs/development/python-modules/mdformat-mkdocs/default.nix b/pkgs/development/python-modules/mdformat-mkdocs/default.nix
index 8bca9230d9144..f4f421399850a 100644
--- a/pkgs/development/python-modules/mdformat-mkdocs/default.nix
+++ b/pkgs/development/python-modules/mdformat-mkdocs/default.nix
@@ -14,7 +14,7 @@
 
 buildPythonPackage rec {
   pname = "mdformat-mkdocs";
-  version = "2.0.8";
+  version = "2.0.9";
   pyproject = true;
 
   disabled = pythonOlder "3.8";
@@ -23,7 +23,7 @@ buildPythonPackage rec {
     owner = "KyleKing";
     repo = "mdformat-mkdocs";
     rev = "refs/tags/v${version}";
-    hash = "sha256-HBRhmCqi13D+y+Vp2F27twU2eaRmJTcAzGOPCWMDtZU=";
+    hash = "sha256-50LHGQSR6foL3SqOK/pGQqOcuUgOE9bI1rt/RoIrVsA=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/numba/default.nix b/pkgs/development/python-modules/numba/default.nix
index 2df58149ba4ac..c0b63c71e8a8b 100644
--- a/pkgs/development/python-modules/numba/default.nix
+++ b/pkgs/development/python-modules/numba/default.nix
@@ -20,7 +20,7 @@
 
 # CUDA-only dependencies:
 , addDriverRunpath
-, autoAddDriverRunpath ? cudaPackages.autoAddDriverRunpathHook or cudaPackages.autoAddOpenGLRunpathHook
+, autoAddDriverRunpath
 , cudaPackages
 
 # CUDA flags:
diff --git a/pkgs/development/python-modules/ocrmypdf/default.nix b/pkgs/development/python-modules/ocrmypdf/default.nix
index 3f880f9d5f903..eb5cf1ecfed2c 100644
--- a/pkgs/development/python-modules/ocrmypdf/default.nix
+++ b/pkgs/development/python-modules/ocrmypdf/default.nix
@@ -9,6 +9,7 @@
 , jbig2enc
 , packaging
 , pdfminer-six
+, pillow-heif
 , pikepdf
 , pillow
 , pluggy
@@ -18,19 +19,17 @@
 , pythonOlder
 , rich
 , reportlab
-, setuptools
 , setuptools-scm
 , substituteAll
 , tesseract
 , tqdm
-, typing-extensions
 , unpaper
 , installShellFiles
 }:
 
 buildPythonPackage rec {
   pname = "ocrmypdf";
-  version = "16.1.2";
+  version = "16.2.0";
 
   disabled = pythonOlder "3.10";
 
@@ -46,10 +45,11 @@ buildPythonPackage rec {
     postFetch = ''
       rm "$out/.git_archival.txt"
     '';
-    hash = "sha256-nZvfkfO5u3iuN0g/KITWbhYCRAJngEOKCW48z6IEPMI=";
+    hash = "sha256-sqhuQ+no6UymxbVtDtWiYQK8kKpO1y37NxLDmRT1LEQ=";
   };
 
   patches = [
+    ./use-pillow-heif.patch
     (substituteAll {
       src = ./paths.patch;
       gs = lib.getExe ghostscript;
@@ -60,30 +60,31 @@ buildPythonPackage rec {
     })
   ];
 
-  nativeBuildInputs = [
-    setuptools
+  build-system = [
     setuptools-scm
+  ];
+
+  nativeBuildInputs = [
     installShellFiles
   ];
 
-  propagatedBuildInputs = [
+  dependencies = [
     deprecation
     img2pdf
     packaging
     pdfminer-six
+    pillow-heif
     pikepdf
     pillow
     pluggy
-    reportlab
     rich
-  ] ++ lib.optionals (pythonOlder "3.10") [
-    typing-extensions
   ];
 
   nativeCheckInputs = [
     hypothesis
     pytest-xdist
     pytestCheckHook
+    reportlab
   ];
 
   pythonImportsCheck = [
diff --git a/pkgs/development/python-modules/ocrmypdf/use-pillow-heif.patch b/pkgs/development/python-modules/ocrmypdf/use-pillow-heif.patch
new file mode 100644
index 0000000000000..fc464cf71b665
--- /dev/null
+++ b/pkgs/development/python-modules/ocrmypdf/use-pillow-heif.patch
@@ -0,0 +1,26 @@
+diff --git a/pyproject.toml b/pyproject.toml
+index d045458f..efa9161d 100644
+--- a/pyproject.toml
++++ b/pyproject.toml
+@@ -16,7 +16,7 @@ dependencies = [
+   "img2pdf>=0.5",
+   "packaging>=20",
+   "pdfminer.six>=20220319",
+-  "pi-heif",                # Heif image format - maintainers: if this is removed, it will NOT break
++  "pillow-heif",                # Heif image format - maintainers: if this is removed, it will NOT break
+   "pikepdf>=8.10.1",
+   "Pillow>=10.0.1",
+   "pluggy>=1",
+diff --git a/src/ocrmypdf/_pipeline.py b/src/ocrmypdf/_pipeline.py
+index 043a78a0..522197b1 100644
+--- a/src/ocrmypdf/_pipeline.py
++++ b/src/ocrmypdf/_pipeline.py
+@@ -42,7 +42,7 @@ from ocrmypdf.pdfinfo import Colorspace, Encoding, PageInfo, PdfInfo
+ from ocrmypdf.pluginspec import OrientationConfidence
+ 
+ try:
+-    from pi_heif import register_heif_opener
++    from pillow_heif import register_heif_opener
+ except ImportError:
+ 
+     def register_heif_opener():
diff --git a/pkgs/development/python-modules/onetimepass/default.nix b/pkgs/development/python-modules/onetimepass/default.nix
index 3bea443a36f23..dde4983c2afea 100644
--- a/pkgs/development/python-modules/onetimepass/default.nix
+++ b/pkgs/development/python-modules/onetimepass/default.nix
@@ -1,23 +1,35 @@
-{ lib, buildPythonPackage, fetchFromGitHub, six, timecop }:
+{
+  lib,
+  buildPythonPackage,
+  fetchFromGitHub,
+  pythonOlder,
+  setuptools,
+  six,
+  timecop,
+  unittestCheckHook,
+}:
 
 buildPythonPackage rec {
   pname = "onetimepass";
   version = "1.0.1";
-  format = "setuptools";
+  pyproject = true;
+
+  disabled = pythonOlder "3.7";
 
   src = fetchFromGitHub {
     owner = "tadeck";
-    repo = pname;
-    rev = "v${version}";
-    sha256 = "0wmv62l3r8r4428gdzyj80lhgadfqvj220khz1wnm9alyzg60wkh";
+    repo = "onetimepass";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-cHJg3vdUpWp5+HACIeTGrqkHKUDS//aQICSjPKgwu3I=";
   };
 
-  propagatedBuildInputs = [
-    six
-  ];
+  build-system = [ setuptools ];
+
+  dependencies = [ six ];
 
   nativeCheckInputs = [
     timecop
+    unittestCheckHook
   ];
 
   pythonImportsCheck = [ "onetimepass" ];
@@ -25,6 +37,7 @@ buildPythonPackage rec {
   meta = with lib; {
     description = "One-time password library for HMAC-based (HOTP) and time-based (TOTP) passwords";
     homepage = "https://github.com/tadeck/onetimepass";
+    changelog = "https://github.com/tadeck/onetimepass/releases/tag/v${version}";
     license = licenses.mit;
     maintainers = with maintainers; [ zakame ];
   };
diff --git a/pkgs/development/python-modules/openai-whisper/default.nix b/pkgs/development/python-modules/openai-whisper/default.nix
index 26c2bbb0a3127..0038098e586ab 100644
--- a/pkgs/development/python-modules/openai-whisper/default.nix
+++ b/pkgs/development/python-modules/openai-whisper/default.nix
@@ -14,14 +14,13 @@
 , numba
 , numpy
 , openai-triton
-, scipy
 , tiktoken
 , torch
 , tqdm
-, transformers
 
 # tests
 , pytestCheckHook
+, scipy
 }:
 
 buildPythonPackage rec {
@@ -45,6 +44,7 @@ buildPythonPackage rec {
 
   nativeBuildInputs = [
     setuptools
+    scipy
   ];
 
   propagatedBuildInputs = [
@@ -52,11 +52,9 @@ buildPythonPackage rec {
     numba
     numpy
     openai-triton
-    scipy
     tiktoken
     torch
     tqdm
-    transformers
   ];
 
   preCheck = ''
diff --git a/pkgs/development/python-modules/pillow-heif/default.nix b/pkgs/development/python-modules/pillow-heif/default.nix
index 6560c63ac2832..d91408fc864d2 100644
--- a/pkgs/development/python-modules/pillow-heif/default.nix
+++ b/pkgs/development/python-modules/pillow-heif/default.nix
@@ -57,8 +57,12 @@ buildPythonPackage rec {
     x265
   ];
 
-  # clang-16: error: argument unused during compilation: '-fno-strict-overflow' [-Werror,-Wunused-command-line-argument]
-  env.NIX_CFLAGS_COMPILE = lib.optionalString stdenv.cc.isClang "-Wno-unused-command-line-argument";
+  env = {
+    # clang-16: error: argument unused during compilation: '-fno-strict-overflow'
+    NIX_CFLAGS_COMPILE = lib.optionalString stdenv.cc.isClang "-Wno-unused-command-line-argument";
+
+    RELEASE_FULL_FLAG = 1;
+  };
 
   propagatedBuildInputs = [
     pillow
diff --git a/pkgs/development/python-modules/pip-system-certs/default.nix b/pkgs/development/python-modules/pip-system-certs/default.nix
new file mode 100644
index 0000000000000..5325550ee04e6
--- /dev/null
+++ b/pkgs/development/python-modules/pip-system-certs/default.nix
@@ -0,0 +1,43 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, setuptools-scm
+, wheel
+, git-versioner
+, wrapt
+}:
+
+buildPythonPackage rec {
+  pname = "pip-system-certs";
+  version = "4.0";
+  pyproject = true;
+
+  src = fetchPypi {
+    inherit version;
+    pname = "pip_system_certs";
+    hash = "sha256-245qMTiNl5XskTmVffGon6UnT7ZhZEVv0JGl0+lMNQw=";
+  };
+
+  nativeBuildInputs = [
+    setuptools-scm
+    wheel
+    git-versioner
+  ];
+
+  propagatedBuildInputs = [
+    wrapt
+  ];
+
+  pythonImportsCheck = [
+    "pip_system_certs.wrapt_requests"
+    "pip_system_certs.bootstrap"
+  ];
+
+  meta = with lib; {
+    description = "Live patches pip and requests to use system certs by default";
+    homepage = "https://gitlab.com/alelec/pip-system-certs";
+    license = licenses.bsd2;
+    maintainers = with maintainers; [ slotThe ];
+  };
+
+}
diff --git a/pkgs/development/python-modules/pip-tools/default.nix b/pkgs/development/python-modules/pip-tools/default.nix
index 8052c574d336f..ba8747cbe2050 100644
--- a/pkgs/development/python-modules/pip-tools/default.nix
+++ b/pkgs/development/python-modules/pip-tools/default.nix
@@ -68,6 +68,9 @@ buildPythonPackage rec {
     "test_compile_recursive_extras"
     "test_combine_different_extras_of_the_same_package"
     "test_diff_should_not_uninstall"
+    "test_cli_compile_all_extras_with_multiple_packages"
+    # Deprecations
+    "test_error_in_pyproject_toml"
   ];
 
   pythonImportsCheck = [
diff --git a/pkgs/development/python-modules/pip-tools/fix-setup-py-bad-syntax-detection.patch b/pkgs/development/python-modules/pip-tools/fix-setup-py-bad-syntax-detection.patch
index 6a88222139e1b..6183ba5f42708 100644
--- a/pkgs/development/python-modules/pip-tools/fix-setup-py-bad-syntax-detection.patch
+++ b/pkgs/development/python-modules/pip-tools/fix-setup-py-bad-syntax-detection.patch
@@ -1,21 +1,22 @@
-diff --color -ru a/piptools/scripts/compile.py b/piptools/scripts/compile.py
---- a/piptools/scripts/compile.py	2022-06-30 11:24:26.000000000 +0200
-+++ b/piptools/scripts/compile.py	2022-08-01 13:40:58.392515765 +0200
-@@ -6,7 +6,7 @@
- from typing import IO, Any, BinaryIO, List, Optional, Tuple, Union, cast
- 
+diff --git a/piptools/scripts/compile.py b/piptools/scripts/compile.py
+index 195faa7..3e69437 100755
+--- a/piptools/scripts/compile.py
++++ b/piptools/scripts/compile.py
+@@ -9,7 +9,7 @@ from pathlib import Path
+ from typing import IO, Any, BinaryIO, cast
+
  import click
 -from build import BuildBackendException
 +from build import BuildException
- from build.util import project_wheel_metadata
  from click.utils import LazyFile, safecall
- from pip._internal.commands import create_command
-@@ -421,7 +421,7 @@
-                 metadata = project_wheel_metadata(
-                     os.path.dirname(os.path.abspath(src_file))
+ from pip._internal.req import InstallRequirement
+ from pip._internal.req.constructors import install_req_from_line
+@@ -369,6 +369,6 @@ def cli(
+                     isolated=build_isolation,
+                     quiet=log.verbosity <= 0,
                  )
 -            except BuildBackendException as e:
-+            except (BuildException,StopIteration) as e:
++            except (BuildException, StopIteration) as e:
                  log.error(str(e))
                  log.error(f"Failed to parse {os.path.abspath(src_file)}")
                  sys.exit(2)
diff --git a/pkgs/development/python-modules/plantuml-markdown/default.nix b/pkgs/development/python-modules/plantuml-markdown/default.nix
index 50e6bb2cf9418..8013e90e71f82 100644
--- a/pkgs/development/python-modules/plantuml-markdown/default.nix
+++ b/pkgs/development/python-modules/plantuml-markdown/default.nix
@@ -13,7 +13,7 @@
 
 buildPythonPackage rec {
   pname = "plantuml-markdown";
-  version = "3.9.4";
+  version = "3.9.5";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -22,7 +22,7 @@ buildPythonPackage rec {
     owner = "mikitex70";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-DSR4/PEs1uzGHgtw5p3HMlquOIYHPWbTHrw6QGx7t4o=";
+    hash = "sha256-bfbji517y0/PXMfLg2gGWlogg7IPhXvQ5vekLzc4/ow=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/pyaml/default.nix b/pkgs/development/python-modules/pyaml/default.nix
index 7a52c601ef35f..f9b70e83157e6 100644
--- a/pkgs/development/python-modules/pyaml/default.nix
+++ b/pkgs/development/python-modules/pyaml/default.nix
@@ -8,12 +8,12 @@
 
 buildPythonPackage rec {
   pname = "pyaml";
-  version = "23.12.0";
+  version = "24.4.0";
   pyproject = true;
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-zm9kjv37GzpVefjO2wT6zw+h6PZIRrY5MJtYW7MitOU=";
+    hash = "sha256-Dkg9kokBDnR6Ml3EMXG8w51lYt0d1HGejMfnyWyZ/OY=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/pydrawise/default.nix b/pkgs/development/python-modules/pydrawise/default.nix
index 2d3d12ca87494..18752af1e057a 100644
--- a/pkgs/development/python-modules/pydrawise/default.nix
+++ b/pkgs/development/python-modules/pydrawise/default.nix
@@ -1,24 +1,25 @@
-{ lib
-, aiohttp
-, aioresponses
-, apischema
-, buildPythonPackage
-, fetchFromGitHub
-, freezegun
-, gql
-, graphql-core
-, pytest-asyncio
-, pytestCheckHook
-, pythonOlder
-, requests
-, setuptools
-, setuptools-scm
+{
+  lib,
+  aiohttp,
+  aioresponses,
+  apischema,
+  buildPythonPackage,
+  fetchFromGitHub,
+  freezegun,
+  gql,
+  graphql-core,
+  pytest-asyncio,
+  pytestCheckHook,
+  pythonOlder,
+  requests,
+  setuptools,
+  setuptools-scm,
 }:
 
 buildPythonPackage rec {
   pname = "pydrawise";
-  version = "2024.3.0";
-  format = "pyproject";
+  version = "2024.4.0";
+  pyproject = true;
 
   disabled = pythonOlder "3.10";
 
@@ -26,15 +27,15 @@ buildPythonPackage rec {
     owner = "dknowles2";
     repo = "pydrawise";
     rev = "refs/tags/${version}";
-    hash = "sha256-sL0/LZ7ggUg2OGkIauNLHR7i3l3k4NGvyY2ea1O1m3E=";
+    hash = "sha256-krePSrMMrMgKDHQSjzH7hSNnRmwyRe0qTDXc0r0+CPU=";
   };
 
-  nativeBuildInputs = [
+  build-system = [
     setuptools
     setuptools-scm
   ];
 
-  propagatedBuildInputs = [
+  dependencies = [
     aiohttp
     apischema
     gql
@@ -49,9 +50,7 @@ buildPythonPackage rec {
     pytestCheckHook
   ];
 
-  pythonImportsCheck = [
-    "pydrawise"
-  ];
+  pythonImportsCheck = [ "pydrawise" ];
 
   meta = with lib; {
     description = "Library for interacting with Hydrawise sprinkler controllers through the GraphQL API";
diff --git a/pkgs/development/python-modules/spacy/default.nix b/pkgs/development/python-modules/spacy/default.nix
index 8e2bd3cb48707..31fc7e658b170 100644
--- a/pkgs/development/python-modules/spacy/default.nix
+++ b/pkgs/development/python-modules/spacy/default.nix
@@ -135,5 +135,7 @@ buildPythonPackage rec {
     changelog = "https://github.com/explosion/spaCy/releases/tag/v${version}";
     license = licenses.mit;
     maintainers = with maintainers; [ ];
+    # Cython.Compiler.Errors.CompileError: spacy/ml/parser_model.pyx
+    broken = true;
   };
 }
diff --git a/pkgs/development/python-modules/testcontainers/default.nix b/pkgs/development/python-modules/testcontainers/default.nix
index 8b7ceb416b4b3..66607ed06fff1 100644
--- a/pkgs/development/python-modules/testcontainers/default.nix
+++ b/pkgs/development/python-modules/testcontainers/default.nix
@@ -11,7 +11,7 @@
 
 buildPythonPackage rec {
   pname = "testcontainers";
-  version = "4.3.3";
+  version = "4.4.0";
   disabled = pythonOlder "3.9";
 
   pyproject = true;
@@ -20,7 +20,7 @@ buildPythonPackage rec {
     owner = "testcontainers";
     repo = "testcontainers-python";
     rev = "refs/tags/testcontainers-v${version}";
-    hash = "sha256-qb7mOtL+YJI24DOBgrqxc817k4fD2kTOtUNF2X0qEIc=";
+    hash = "sha256-1iwbfArEjYxpEpMlmJ8rzVLXA8OSNT7ozkpTVTIL91U=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/timecop/default.nix b/pkgs/development/python-modules/timecop/default.nix
index fb455d079b0e4..443b609fb4c4f 100644
--- a/pkgs/development/python-modules/timecop/default.nix
+++ b/pkgs/development/python-modules/timecop/default.nix
@@ -1,20 +1,35 @@
-{ lib, buildPythonPackage, fetchPypi }:
+{
+  lib,
+  buildPythonPackage,
+  fetchPypi,
+  pythonOlder,
+  setuptools,
+  unittestCheckHook,
+}:
 
 buildPythonPackage rec {
   pname = "timecop";
   version = "0.5.0dev";
-  format = "setuptools";
+  pyproject = true;
+
+  disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0zbi58sw2yp1qchzfhyi7bsrwxajiypphg65fir98kvj03g011wd";
+    hash = "sha256-jYcA3gByT5RydMU8eK+PUnWe9TrRQ/chw+F6wTUqcX0=";
   };
 
+  build-system = [ setuptools ];
+
+  nativeCheckInputs = [ unittestCheckHook ];
+
   # test_epoch fails, see https://github.com/bluekelp/pytimecop/issues/4
   preCheck = ''
     sed -i 's/test_epoch/_test_epoch/' timecop/tests/test_freeze.py
   '';
 
+  pythonImportsCheck = [ "timecop" ];
+
   meta = with lib; {
     description = "A port of the most excellent TimeCop Ruby Gem for Python";
     homepage = "https://github.com/bluekelp/pytimecop";
diff --git a/pkgs/development/python-modules/transformers/default.nix b/pkgs/development/python-modules/transformers/default.nix
index d261337be26d0..5bcbeb035f673 100644
--- a/pkgs/development/python-modules/transformers/default.nix
+++ b/pkgs/development/python-modules/transformers/default.nix
@@ -54,7 +54,7 @@
 
 buildPythonPackage rec {
   pname = "transformers";
-  version = "4.40.0";
+  version = "4.40.1";
   pyproject = true;
 
   disabled = pythonOlder "3.8";
@@ -63,7 +63,7 @@ buildPythonPackage rec {
     owner = "huggingface";
     repo = "transformers";
     rev = "refs/tags/v${version}";
-    hash = "sha256-k0AloOG7fRQhTW8IF6uQSfav8p1KC5633SaLNYZrZ2M=";
+    hash = "sha256-w9BVJwYS2QV58UTOpcoQwdC+dxZuhLS2h8PqN5W2Yjc=";
   };
 
   build-system = [
diff --git a/pkgs/development/python-modules/units/default.nix b/pkgs/development/python-modules/units/default.nix
deleted file mode 100644
index 90e7c73b56a51..0000000000000
--- a/pkgs/development/python-modules/units/default.nix
+++ /dev/null
@@ -1,22 +0,0 @@
-{ lib
-, buildPythonPackage
-, fetchPypi
-}:
-
-buildPythonPackage rec {
-  pname = "units";
-  version = "0.07";
-  format = "setuptools";
-
-  src = fetchPypi {
-    inherit pname version;
-    sha256 = "43eb3e073e1b11289df7b1c3f184b5b917ccad178b717b03933298716f200e14";
-  };
-
-  meta = with lib; {
-    description = "Python support for quantities with units";
-    homepage = "https://bitbucket.org/adonohue/units/";
-    license = licenses.psfl;
-    maintainers = [ ];
-  };
-}
diff --git a/pkgs/development/python-modules/zha/default.nix b/pkgs/development/python-modules/zha/default.nix
index 6e749edb9f257..d6d23f46611a4 100644
--- a/pkgs/development/python-modules/zha/default.nix
+++ b/pkgs/development/python-modules/zha/default.nix
@@ -26,7 +26,7 @@
 
 buildPythonPackage rec {
   pname = "zha";
-  version = "0.0.5";
+  version = "0.0.8";
   pyproject = true;
 
   disabled = pythonOlder "3.12";
@@ -35,7 +35,7 @@ buildPythonPackage rec {
     owner = "zigpy";
     repo = "zha";
     rev = "refs/tags/${version}";
-    hash = "sha256-47dlWMzY1vPmHIDCy8a0xzk2G+OPq6vEK5OpP1c8vw4=";
+    hash = "sha256-xOaqwgL8NqB3pHNa6U/wextntI5aMivHLaIhSRqvgRU=";
   };
 
   postPatch = ''
@@ -49,8 +49,6 @@ buildPythonPackage rec {
     "zha-quirks"
   ];
 
-
-
   nativeBuildInputs = [
     pythonRelaxDepsHook
   ];
@@ -94,6 +92,7 @@ buildPythonPackage rec {
     "test_check_available_unsuccessful"
     "test_device_counter_sensors"
     "test_device_tracker"
+    "test_device_unavailable_skips_entity_polling"
     "test_elec_measurement_sensor_polling"
     "test_electrical_measurement_init"
     "test_group_member_assume_state"