diff options
Diffstat (limited to 'pkgs/development/python-modules')
16 files changed, 247 insertions, 189 deletions
diff --git a/pkgs/development/python-modules/app-model/default.nix b/pkgs/development/python-modules/app-model/default.nix index 7dc1c65349eaf..bf2130e224176 100644 --- a/pkgs/development/python-modules/app-model/default.nix +++ b/pkgs/development/python-modules/app-model/default.nix @@ -1,20 +1,21 @@ -{ lib -, buildPythonPackage -, fetchFromGitHub -, hatch-vcs -, hatchling -, in-n-out -, psygnal -, pydantic -, pydantic-compat -, pytestCheckHook -, pythonOlder -, typing-extensions +{ + lib, + buildPythonPackage, + fetchFromGitHub, + hatch-vcs, + hatchling, + in-n-out, + psygnal, + pydantic, + pydantic-compat, + pytestCheckHook, + pythonOlder, + typing-extensions, }: buildPythonPackage rec { pname = "app-model"; - version = "0.2.6"; + version = "0.2.7"; pyproject = true; disabled = pythonOlder "3.8"; @@ -23,15 +24,15 @@ buildPythonPackage rec { owner = "pyapp-kit"; repo = "app-model"; rev = "refs/tags/v${version}"; - hash = "sha256-EMlxY9Xna9e3kWJ7X8oRuLHEmivwVFcEXRDvZfN2rNY="; + hash = "sha256-ISMSt7c8CoxffMhg7XC/ebKkgXFTBihDr1fGkqMCBoc="; }; - nativeBuildInputs = [ + build-system = [ hatch-vcs hatchling ]; - propagatedBuildInputs = [ + dependencies = [ psygnal pydantic pydantic-compat @@ -39,13 +40,9 @@ buildPythonPackage rec { typing-extensions ]; - nativeCheckInputs = [ - pytestCheckHook - ]; + nativeCheckInputs = [ pytestCheckHook ]; - pythonImportsCheck = [ - "app_model" - ]; + pythonImportsCheck = [ "app_model" ]; meta = with lib; { description = "Module to implement generic application schema"; diff --git a/pkgs/development/python-modules/chromadb/default.nix b/pkgs/development/python-modules/chromadb/default.nix index 2042758efd8af..471b6111a93d3 100644 --- a/pkgs/development/python-modules/chromadb/default.nix +++ b/pkgs/development/python-modules/chromadb/default.nix @@ -132,6 +132,7 @@ buildPythonPackage rec { pytestFlagsArray = [ "-x" ]; preCheck = '' + (($(ulimit -n) < 1024)) && ulimit -n 1024 export HOME=$(mktemp -d) ''; diff --git a/pkgs/development/python-modules/dissect-executable/default.nix b/pkgs/development/python-modules/dissect-executable/default.nix index c6abdd5ee6f66..c8d9c456fa990 100644 --- a/pkgs/development/python-modules/dissect-executable/default.nix +++ b/pkgs/development/python-modules/dissect-executable/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "dissect-executable"; - version = "1.5"; + version = "1.6"; pyproject = true; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "fox-it"; repo = "dissect.executable"; rev = "refs/tags/${version}"; - hash = "sha256-aAalU0TUqXc13WnxJvirG3QzQyMstecOfnXMdFT8IzU="; + hash = "sha256-b8xPOIUMn6JdYlvuoV5UeBdyISh6CC2Gh6E6U5ZZ7qY="; }; build-system = [ diff --git a/pkgs/development/python-modules/duckduckgo-search/default.nix b/pkgs/development/python-modules/duckduckgo-search/default.nix index 708762bb2622f..a06c16586b0a3 100644 --- a/pkgs/development/python-modules/duckduckgo-search/default.nix +++ b/pkgs/development/python-modules/duckduckgo-search/default.nix @@ -1,20 +1,52 @@ -{ lib -, aiofiles -, buildPythonPackage -, click -, fetchFromGitHub -, h2 -, httpx -, lxml -, pythonOlder -, requests -, setuptools -, socksio +{ + lib, + buildPythonPackage, + click, + fetchFromGitHub, + pythonOlder, + setuptools, + orjson, + curl-cffi, + + # To build orjson + rustPlatform, + + # Optional dependencies + lxml, }: +let + curl-cffi_0_7_0 = curl-cffi.overrideAttrs ( + final: old: { + version = "0.7.0b4"; + src = fetchFromGitHub { + owner = "yifeikong"; + repo = "curl_cffi"; + rev = "v${final.version}"; + hash = "sha256-txrJNUzswAPeH4Iazn0iKJI0Rqk0HHRoDrtTfDHKMoo="; + }; + } + ); + orjson_3_10_3 = orjson.overrideAttrs ( + final: old: { + version = "3.10.3"; + src = fetchFromGitHub { + owner = "ijl"; + repo = "orjson"; + rev = "refs/tags/${final.version}"; + hash = "sha256-bK6wA8P/IXEbiuJAx7psd0nUUKjR1jX4scFfJr1MBAk="; + }; + cargoDeps = rustPlatform.fetchCargoTarball { + inherit (final) src; + name = "${old.pname}-${final.version}"; + hash = "sha256-ilGq+/gPSuNwURUWy2ZxInzmUv+PxYMxd8esxrMpr2o="; + }; + } + ); +in buildPythonPackage rec { pname = "duckduckgo-search"; - version = "5.0"; + version = "v5.3.1"; pyproject = true; disabled = pythonOlder "3.8"; @@ -22,36 +54,32 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "deedy5"; repo = "duckduckgo_search"; - rev = "refs/tags/v${version}"; - hash = "sha256-OZFkSFyXC2MFP2MbKwF/qR8zvCFzPKgLmX+nuIztOpw="; + rev = version; + hash = "sha256-T7rlB3dU7y+HbHr1Ss9KkejlXFORhnv9Va7cFTRtfQU="; }; - nativeBuildInputs = [ - setuptools - ]; + nativeBuildInputs = [ setuptools ]; propagatedBuildInputs = [ - aiofiles click - h2 - httpx - lxml - requests - socksio - ] ++ httpx.optional-dependencies.brotli - ++ httpx.optional-dependencies.http2 - ++ httpx.optional-dependencies.socks; - - pythonImportsCheck = [ - "duckduckgo_search" + orjson_3_10_3 + curl-cffi_0_7_0 ]; - meta = with lib; { + passthru.optional-dependencies = { + lxml = [ lxml ]; + }; + + doCheck = false; # tests require network access + + pythonImportsCheck = [ "duckduckgo_search" ]; + + meta = { description = "Python CLI and library for searching for words, documents, images, videos, news, maps and text translation using the DuckDuckGo.com search engine"; mainProgram = "ddgs"; homepage = "https://github.com/deedy5/duckduckgo_search"; - changelog = "https://github.com/deedy5/duckduckgo_search/releases/tag/v${version}"; - license = licenses.mit; - maintainers = with maintainers; [ ]; + changelog = "https://github.com/deedy5/duckduckgo_search/releases/tag/${version}"; + license = lib.licenses.mit; + maintainers = with lib.maintainers; [ drawbu ]; }; } diff --git a/pkgs/development/python-modules/napari-console/default.nix b/pkgs/development/python-modules/napari-console/default.nix index 9072ada93f420..07b8d735736a1 100644 --- a/pkgs/development/python-modules/napari-console/default.nix +++ b/pkgs/development/python-modules/napari-console/default.nix @@ -1,47 +1,44 @@ -{ lib -, buildPythonPackage -, fetchFromGitHub -, imageio -, ipykernel -, ipython -, napari-plugin-engine -, pythonOlder -, qtconsole -, setuptools-scm +{ + lib, + buildPythonPackage, + fetchFromGitHub, + imageio, + ipykernel, + ipython, + napari-plugin-engine, + pythonOlder, + qtconsole, + qtpy, + setuptools-scm, }: buildPythonPackage rec { pname = "napari-console"; - version = "0.0.7"; - format = "pyproject"; + version = "0.0.9"; + pyproject = true; disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "napari"; - repo = pname; + repo = "napari-console"; rev = "refs/tags/v${version}"; - hash = "sha256-vHLCVMgrcs54pGb48wQpc0h7QBIfE6r7hCSoDNI3QvA="; + hash = "sha256-3gOfiPx06G5c4eaLQ5kP45hUr6yw91esznJFacpO66Q="; }; - nativeBuildInputs = [ - setuptools-scm - ]; + build-system = [ setuptools-scm ]; - propagatedBuildInputs = [ - imageio + dependencies = [ ipykernel ipython - napari-plugin-engine qtconsole + qtpy ]; # Circular dependency: napari doCheck = false; - pythonImportsCheck = [ - "napari_console" - ]; + pythonImportsCheck = [ "napari_console" ]; meta = with lib; { description = "A plugin that adds a console to napari"; diff --git a/pkgs/development/python-modules/napari/default.nix b/pkgs/development/python-modules/napari/default.nix index 0bccb016570ca..b5baed96a4417 100644 --- a/pkgs/development/python-modules/napari/default.nix +++ b/pkgs/development/python-modules/napari/default.nix @@ -1,67 +1,69 @@ -{ lib -, mkDerivationWith -, appdirs -, app-model -, buildPythonPackage -, cachey -, certifi -, dask -, docstring-parser -, fetchFromGitHub -, imageio -, jsonschema -, magicgui -, napari-console -, napari-npe2 -, napari-svg -, numpydoc -, pint -, psutil -, pydantic -, pyopengl -, pillow -, pythonOlder -, pyyaml -, scikit-image -, scipy -, setuptools-scm -, sphinx -, superqt -, tifffile -, toolz -, tqdm -, typing-extensions -, vispy -, wrapQtAppsHook -, wrapt +{ + lib, + app-model, + appdirs, + buildPythonPackage, + cachey, + certifi, + dask, + docstring-parser, + fetchFromGitHub, + imageio, + jsonschema, + magicgui, + mkDerivationWith, + napari-console, + napari-npe2, + napari-svg, + numpydoc, + pandas, + pillow, + pint, + psutil, + pydantic, + pyopengl, + pythonOlder, + pyyaml, + scikit-image, + scipy, + setuptools, + setuptools-scm, + superqt, + tifffile, + toolz, + tqdm, + typing-extensions, + vispy, + wrapQtAppsHook, + wrapt, }: mkDerivationWith buildPythonPackage rec { pname = "napari"; version = "0.4.19.post1"; - format = "pyproject"; + pyproject = true; - disabled = pythonOlder "3.8"; + disabled = pythonOlder "3.9"; src = fetchFromGitHub { owner = "napari"; - repo = pname; + repo = "napari"; rev = "refs/tags/v${version}"; hash = "sha256-qw5WdFPySNkmm+dNu+hqsmr+csBpHnSl9bMpb4nKEqI="; }; postPatch = '' substituteInPlace setup.cfg \ - --replace "scikit-image>=0.19.1" "scikit-image" \ - --replace "sphinx<5" "sphinx" \ - --replace "vispy>=0.11.0,<0.12" "vispy" + --replace-fail "scikit-image[data]>=0.19.1" "scikit-image" ''; - nativeBuildInputs = [ + build-system = [ + setuptools setuptools-scm - wrapQtAppsHook ]; + nativeBuildInputs = [ wrapQtAppsHook ]; + propagatedBuildInputs = [ app-model appdirs @@ -76,15 +78,15 @@ mkDerivationWith buildPythonPackage rec { napari-npe2 napari-svg numpydoc - pint + pandas pillow + pint psutil pydantic pyopengl pyyaml scikit-image scipy - sphinx superqt tifffile toolz diff --git a/pkgs/development/python-modules/pubnub/default.nix b/pkgs/development/python-modules/pubnub/default.nix index 58b6bd159d508..868926ba95f13 100644 --- a/pkgs/development/python-modules/pubnub/default.nix +++ b/pkgs/development/python-modules/pubnub/default.nix @@ -16,7 +16,7 @@ buildPythonPackage rec { pname = "pubnub"; - version = "7.4.4"; + version = "8.0.0"; pyproject = true; disabled = pythonOlder "3.7"; @@ -25,7 +25,7 @@ buildPythonPackage rec { owner = "pubnub"; repo = "python"; rev = "refs/tags/v${version}"; - hash = "sha256-4Paodw3t2RvAKrDMcWHIGLs5JNtH/9sP+BTyAm/hj4E="; + hash = "sha256-GKJv/GJ/h/LVbEa8Wz7iXc8J38UTTlNa0/08+p5sYCA="; }; build-system = [ setuptools ]; diff --git a/pkgs/development/python-modules/pyslurm/default.nix b/pkgs/development/python-modules/pyslurm/default.nix index b910da5b69e26..f65aae69cded6 100644 --- a/pkgs/development/python-modules/pyslurm/default.nix +++ b/pkgs/development/python-modules/pyslurm/default.nix @@ -1,8 +1,8 @@ { lib , pythonOlder , fetchFromGitHub -, fetchpatch , buildPythonPackage +, setuptools , cython , slurm }: @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "pyslurm"; version = "23.11.0"; - format = "setuptools"; + pyproject = true; disabled = pythonOlder "3.6"; @@ -21,15 +21,16 @@ buildPythonPackage rec { hash = "sha256-Qi0XftneKj7hdDiLY2hoRONRrPv49mfQlvlNkudH54Y="; }; - patches = [ (fetchpatch { - name = "remove-undeclared-KILL_JOB_ARRAY"; - url = "https://github.com/PySlurm/pyslurm/commit/f7a7d8beb8ceb4e4c1b248bab2ebb995dcae77e2.patch"; - hash = "sha256-kQLGiGzAhqP8Z6pObz9vdTRdITd12w7KuUDXsfyLIU8="; - })]; + nativeBuildInputs = [ + setuptools + ]; buildInputs = [ cython slurm ]; - setupPyBuildFlags = [ "--slurm-lib=${lib.getLib slurm}/lib" "--slurm-inc=${lib.getDev slurm}/include" ]; + env = { + SLURM_LIB_DIR = "${lib.getLib slurm}/lib"; + SLURM_INCLUDE_DIR = "${lib.getDev slurm}/include"; + }; # Test cases need /etc/slurm/slurm.conf and require a working slurm installation doCheck = false; diff --git a/pkgs/development/python-modules/python3-gnutls/default.nix b/pkgs/development/python-modules/python3-gnutls/default.nix index 72f695326d758..6adaf3c033933 100644 --- a/pkgs/development/python-modules/python3-gnutls/default.nix +++ b/pkgs/development/python-modules/python3-gnutls/default.nix @@ -1,20 +1,22 @@ { lib, fetchFromGitHub, substituteAll, buildPythonPackage, isPy3k, gnutls -, twisted, pyopenssl, service-identity }: +, twisted, pyopenssl, service-identity, setuptools }: buildPythonPackage rec { pname = "python3-gnutls"; - version = "3.1.9"; - format = "setuptools"; + version = "3.1.10"; + pyproject = true; disabled = !isPy3k; src = fetchFromGitHub { owner = "AGProjects"; repo = "python3-gnutls"; - rev = "324b78f7cd3d9fe58c89c7f0b2bf94199bd6a6e5"; # version not tagged - hash = "sha256-18T8bAHlNERHobsspUFvSC6ulN55nrFFb5aqNwU8T00="; + rev = "refs/tags/release-${version}"; + hash = "sha256-AdFRF3ZlkkAoSm5rvf/09FSYIo7SsZ38sD2joOLyukA="; }; + nativeBuildInputs = [ setuptools ]; + propagatedBuildInputs = [ twisted pyopenssl service-identity ]; patches = [ diff --git a/pkgs/development/python-modules/scikit-posthocs/default.nix b/pkgs/development/python-modules/scikit-posthocs/default.nix index e8f3933299a74..1aba1d935c4e9 100644 --- a/pkgs/development/python-modules/scikit-posthocs/default.nix +++ b/pkgs/development/python-modules/scikit-posthocs/default.nix @@ -16,7 +16,7 @@ buildPythonPackage rec { pname = "scikit-posthocs"; version = "0.9.0"; - format = "pyproject"; + pyproject = true; src = fetchFromGitHub { owner = "maximtrp"; @@ -25,13 +25,6 @@ buildPythonPackage rec { hash = "sha256-sRop5DKakrZEBswzTvumn68wKqU15zM5aCLfZ/PdsFg="; }; - patches = [ - # Fixed on master: https://github.com/maximtrp/scikit-posthocs/commit/02266a00ce0eb6a089e7efe07816da1aa5152fc9 - ./0001-increased-abs-tolerance-for-wilcoxon-test.patch - # Fixed on master: https://github.com/maximtrp/scikit-posthocs/commit/5416ffba3ab01aebab3909400b5a9e847022898e - ./0002-Update-test_posthocs.py.patch - ]; - nativeBuildInputs = [ setuptools wheel diff --git a/pkgs/development/python-modules/setuptools-gettext/default.nix b/pkgs/development/python-modules/setuptools-gettext/default.nix index 394f4c4693fad..ab9961af33958 100644 --- a/pkgs/development/python-modules/setuptools-gettext/default.nix +++ b/pkgs/development/python-modules/setuptools-gettext/default.nix @@ -1,16 +1,22 @@ -{ lib -, buildPythonPackage -, fetchFromGitHub -, pythonOlder -, setuptools +{ + lib, + buildPythonPackage, + fetchFromGitHub, + pythonOlder, + pythonAtLeast, + setuptools, + tomli, + pytestCheckHook, + gettext, }: buildPythonPackage rec { pname = "setuptools-gettext"; version = "0.1.11"; - format = "setuptools"; + pyproject = true; - disabled = pythonOlder "3.7"; + # >=3.12 doesn't work because the package depends on `distutils` + disabled = pythonOlder "3.7" || pythonAtLeast "3.12"; src = fetchFromGitHub { owner = "breezy-team"; @@ -19,19 +25,22 @@ buildPythonPackage rec { hash = "sha256-yLKn4wwGgRdlsISAT71lD2vkIefsTJRB+OEA030adZY="; }; - propagatedBuildInputs = [ - setuptools - ]; + build-system = [ setuptools ]; + + dependencies = [ setuptools ] ++ lib.optionals (pythonOlder "3.11") [ tomli ]; + + pythonImportsCheck = [ "setuptools_gettext" ]; - pythonImportsCheck = [ - "setuptools_gettext" + nativeCheckInputs = [ + pytestCheckHook + gettext ]; - meta = with lib; { + meta = { changelog = "https://github.com/breezy-team/setuptools-gettext/releases/tag/v${version}"; description = "setuptools plugin for building mo files"; homepage = "https://github.com/breezy-team/setuptools-gettext"; - license = licenses.gpl2Plus; - maintainers = with maintainers; [ ]; + license = lib.licenses.gpl2Plus; + maintainers = with lib.maintainers; [ tomasajt ]; }; } diff --git a/pkgs/development/python-modules/stim/default.nix b/pkgs/development/python-modules/stim/default.nix index 3e95b74ef9ef4..ca76e41880af0 100644 --- a/pkgs/development/python-modules/stim/default.nix +++ b/pkgs/development/python-modules/stim/default.nix @@ -32,7 +32,7 @@ buildPythonPackage rec { postPatch = '' # asked to relax this in https://github.com/quantumlib/Stim/issues/623 substituteInPlace pyproject.toml \ - --replace "pybind11==" "pybind11>=" + --replace-quiet "pybind11~=" "pybind11>=" ''; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/succulent/default.nix b/pkgs/development/python-modules/succulent/default.nix index 74d369acefc1b..f3d90ec52abfa 100644 --- a/pkgs/development/python-modules/succulent/default.nix +++ b/pkgs/development/python-modules/succulent/default.nix @@ -2,6 +2,7 @@ , buildPythonPackage , fetchFromGitHub , flask +, lxml , pandas , pyyaml , poetry-core @@ -9,14 +10,15 @@ , pythonRelaxDepsHook , pythonOlder , toml-adapt +, xmltodict }: buildPythonPackage rec { pname = "succulent"; version = "0.3.3"; - format = "pyproject"; + pyproject = true; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "firefly-cpp"; @@ -27,7 +29,6 @@ buildPythonPackage rec { pythonRelaxDeps = [ "flask" - "pandas" ]; nativeBuildInputs = [ @@ -37,8 +38,10 @@ buildPythonPackage rec { propagatedBuildInputs = [ flask + lxml pandas pyyaml + xmltodict ]; nativeCheckInputs = [ diff --git a/pkgs/development/python-modules/superqt/default.nix b/pkgs/development/python-modules/superqt/default.nix index e7c3aaa04589a..7012efc0e9065 100644 --- a/pkgs/development/python-modules/superqt/default.nix +++ b/pkgs/development/python-modules/superqt/default.nix @@ -1,44 +1,66 @@ -{ lib -, buildPythonPackage -, fetchFromGitHub -, setuptools-scm -, pyqt5 -, qtpy -, typing-extensions -, pytestCheckHook -, pygments +{ + lib, + buildPythonPackage, + fetchFromGitHub, + hatch-vcs, + hatchling, + pint, + pygments, + pyqt5, + pyqt6, + pyside2, + pyside6, + pytestCheckHook, + pythonOlder, + qtpy, + typing-extensions, }: buildPythonPackage rec { pname = "superqt"; - version = "0.3.8"; - format = "pyproject"; + version = "0.6.5"; + pyproject = true; + + disabled = pythonOlder "3.8"; src = fetchFromGitHub { - owner = "napari"; - repo = pname; + owner = "pyapp-kit"; + repo = "superqt"; rev = "refs/tags/v${version}"; hash = "sha256-zEMG2zscGDlRxtLn/lUTEjZBPabcwzMcj/kMcy3yOs8="; }; - nativeBuildInputs = [ setuptools-scm ]; + build-system = [ + hatch-vcs + hatchling + ]; - propagatedBuildInputs = [ + dependencies = [ + pygments pyqt5 qtpy typing-extensions - pygments ]; + passthru.optional-dependencies = { + quantity = [ pint ]; + pyside2 = [ pyside2 ]; + pyside6 = [ pyside6 ]; + pyqt6 = [ pyqt6 ]; + }; + nativeCheckInputs = [ pytestCheckHook ]; - doCheck = false; # Segfaults... + # Segmentation fault + doCheck = false; - pythonImportsCheck = [ "superqt" ]; + # Segmentation fault + # pythonImportsCheck = [ "superqt" ]; meta = with lib; { description = "Missing widgets and components for Qt-python (napari/superqt)"; homepage = "https://github.com/napari/superqt"; + changelog = "https://github.com/pyapp-kit/superqt/releases/tag/v${version}"; license = licenses.bsd3; maintainers = with maintainers; [ SomeoneSerge ]; }; diff --git a/pkgs/development/python-modules/types-beautifulsoup4/default.nix b/pkgs/development/python-modules/types-beautifulsoup4/default.nix index 24a48b3bdca9b..57c1f550b2e49 100644 --- a/pkgs/development/python-modules/types-beautifulsoup4/default.nix +++ b/pkgs/development/python-modules/types-beautifulsoup4/default.nix @@ -8,12 +8,12 @@ buildPythonPackage rec { pname = "types-beautifulsoup4"; - version = "4.12.0.20240504"; + version = "4.12.0.20240511"; pyproject = true; src = fetchPypi { inherit pname version; - hash = "sha256-17evTMxS/CJ4TTOlKWleNDKam91dtqZJybJcssOhSNU="; + hash = "sha256-AE9glv3YOxnNv2yxDk6uV7ECBezMNl0Kadd9qDYBLig="; }; build-system = [ setuptools ]; diff --git a/pkgs/development/python-modules/zigpy/default.nix b/pkgs/development/python-modules/zigpy/default.nix index 3cc9a89e70b3f..a52549728bb61 100644 --- a/pkgs/development/python-modules/zigpy/default.nix +++ b/pkgs/development/python-modules/zigpy/default.nix @@ -1,4 +1,5 @@ { lib +, stdenv , aiohttp , aioresponses , aiosqlite @@ -74,6 +75,8 @@ buildPythonPackage rec { disabledTests = [ # assert quirked.quirk_metadata.quirk_location.endswith("zigpy/tests/test_quirks_v2.py]-line:104") is False "test_quirks_v2" + ] ++ lib.optionals (stdenv.isLinux && stdenv.isx86_64) [ + "test_periodic_scan_priority" ]; disabledTestPaths = [ |