diff options
Diffstat (limited to 'pkgs/development/r-modules/default.nix')
| -rw-r--r-- | pkgs/development/r-modules/default.nix | 14 |
1 files changed, 12 insertions, 2 deletions
diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index 3aaffff2b41f1..e2b2e7feea004 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -343,6 +343,7 @@ let fftw = [ pkgs.fftw.dev ]; fftwtools = with pkgs; [ fftw.dev pkg-config ]; Formula = [ pkgs.gmp ]; + gdalraster = [ pkgs.pkg-config ]; gdtools = with pkgs; [ cairo.dev fontconfig.lib freetype.dev ]; GeneralizedWendland = [ pkgs.gsl ]; ggiraph = with pkgs; [ pkgs.libpng.dev ]; @@ -549,6 +550,7 @@ let coga = [ pkgs.gsl.dev ]; deepSNV = with pkgs; [ xz.dev bzip2.dev zlib.dev ]; epialleleR = with pkgs; [ xz.dev bzip2.dev zlib.dev ]; + gdalraster = with pkgs; [ gdal proj.dev sqlite.dev ]; gpg = [ pkgs.gpgme ]; webp = [ pkgs.libwebp ]; RMark = [ pkgs.which ]; @@ -583,6 +585,7 @@ let openssl = [ pkgs.pkg-config ]; pdftools = [ pkgs.pkg-config ]; qckitfastq = [ pkgs.zlib.dev ]; + raer = with pkgs; [ zlib.dev xz.dev bzip2.dev ]; RQuantLib = with pkgs; [ quantlib.dev boost.dev ]; sf = with pkgs; [ pkg-config sqlite.dev proj.dev ]; terra = with pkgs; [ pkg-config sqlite.dev proj.dev ]; @@ -595,6 +598,7 @@ let Cairo = [ pkgs.pkg-config ]; CLVTools = [ pkgs.gsl ]; excursions = [ pkgs.gsl ]; + gpuMagic = [ pkgs.ocl-icd ]; JMcmprsk = [ pkgs.gsl ]; KSgeneral = [ pkgs.fftw.dev ]; mashr = [ pkgs.gsl ]; @@ -639,7 +643,7 @@ let Rmmquant = [ pkgs.zlib.dev ]; SICtools = with pkgs; [ zlib.dev ncurses.dev ]; Signac = [ pkgs.zlib.dev ]; - TransView = [ pkgs.zlib.dev ]; + TransView = with pkgs; [ xz.dev bzip2.dev zlib.dev ]; bigsnpr = [ pkgs.zlib.dev ]; zlib = [ pkgs.zlib.dev ]; divest = [ pkgs.zlib.dev ]; @@ -651,7 +655,7 @@ let matchingMarkets = [ pkgs.zlib.dev ]; methylKit = with pkgs; [ zlib.dev bzip2.dev xz.dev ]; ndjson = [ pkgs.zlib.dev ]; - podkat = [ pkgs.zlib.dev ]; + podkat = with pkgs; [ zlib.dev xz.dev bzip2.dev ]; qrqc = [ pkgs.zlib.dev ]; rJPSGCS = [ pkgs.zlib.dev ]; rhdf5filters = with pkgs; [ zlib.dev bzip2.dev ]; @@ -678,6 +682,7 @@ let crandep = [ pkgs.gsl ]; catSurv = [ pkgs.gsl ]; ccfindR = [ pkgs.gsl ]; + screenCounter = [ pkgs.zlib.dev ]; SPARSEMODr = [ pkgs.gsl ]; RKHSMetaMod = [ pkgs.gsl ]; LCMCR = [ pkgs.gsl ]; @@ -913,6 +918,7 @@ let "MSnID" "OmnipathR" "precommit" + "protGear" "PSCBS" "iemisc" "repmis" @@ -957,12 +963,16 @@ let ]; packagesToSkipCheck = [ + "MsDataHub" # tries to connect to ExperimentHub "Rmpi" # tries to run MPI processes "ReactomeContentService4R" # tries to connect to Reactome "PhIPData" # tries to download something from a DB + "RBioFormats" # tries to download jar during load test "pbdMPI" # tries to run MPI processes "data_table" # fails to rename shared library before check + "coMethDMR" # tries to connect to ExperimentHub "multiMiR" # tries to connect to DB + "snapcount" # tries to connect to snaptron.cs.jhu.edu ]; # Packages which cannot be installed due to lack of dependencies or other reasons. |